BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009230
(539 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444145|ref|XP_002268852.1| PREDICTED: uncharacterized protein LOC100257655 [Vitis vinifera]
gi|297740887|emb|CBI31069.3| unnamed protein product [Vitis vinifera]
Length = 705
Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/538 (77%), Positives = 464/538 (86%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
MC R KCG +G+ A V+++ S L + +K+K REITE+SL L+PL +EL AYF ER+
Sbjct: 162 MCHRGKCGSRGNIRAFVNDSSSYGRLNQITKIKPKREITEESLGLKPLCSELVAYFGERM 221
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RN VMQK +G + +IAF Y RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI
Sbjct: 222 ISEKTLARNSVMQKSYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDI 281
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
+ SDIIIVEGE+DKLSMEEAGF NCVSVPDGAP SVS K S E+D KYQYLWNCK Y
Sbjct: 282 KEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVFESAEKDIKYQYLWNCKEY 341
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
L++ASRIILATDGD PG ALAEELARR+GRERCWRV+WPKKN+V+HFKDANEVLMYLGP
Sbjct: 342 LEKASRIILATDGDAPGLALAEELARRLGRERCWRVKWPKKNEVEHFKDANEVLMYLGPD 401
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT 300
LKEV+ENAE+YPI GLFNF YF+EID YYH T G E G+STGWR LN LYNV+PGELT
Sbjct: 402 VLKEVIENAEIYPIQGLFNFSHYFNEIDGYYHHTLGFELGVSTGWRGLNGLYNVVPGELT 461
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
+VTGVPNSGKSEWIDAL+CNIN GW F LCSMENKVREHARKLLEKHIKKPFF+A YG
Sbjct: 462 VVTGVPNSGKSEWIDALLCNINRSVGWSFALCSMENKVREHARKLLEKHIKKPFFKAGYG 521
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
S ERMTVEEFE GK WLS TF LIRCE DSLP+IKWVLDLAK+AVLRHGVRGLVIDPYN
Sbjct: 522 ESIERMTVEEFELGKKWLSETFYLIRCEKDSLPNIKWVLDLAKSAVLRHGVRGLVIDPYN 581
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
ELDHQRP QTETEYVSQMLTM+KRFAQHH+CHVWFVAHPRQLH W G PPN+YDISGSA
Sbjct: 582 ELDHQRPPGQTETEYVSQMLTMIKRFAQHHSCHVWFVAHPRQLHQWNGGPPNMYDISGSA 641
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
HFINKCDNGIVIHRNR+PEAGP+D+VQVCVRKVRNKVVGTIG+AFLSY+R++G Y DI
Sbjct: 642 HFINKCDNGIVIHRNRNPEAGPVDQVQVCVRKVRNKVVGTIGDAFLSYDRISGVYTDI 699
>gi|356555942|ref|XP_003546288.1| PREDICTED: uncharacterized protein LOC100779625 [Glycine max]
Length = 678
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/534 (79%), Positives = 469/534 (87%), Gaps = 3/534 (0%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR KCGWKGST A S S+ + +K IR+ITE+ LELEPL +EL YF+ERLI
Sbjct: 135 CFRGKCGWKGSTQAFAG---SSSARTQVDPVKKIRKITEEELELEPLCDELVVYFSERLI 191
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN V Q+++ ++VIAFPY RNG L++CKYRD NK FWQE +TEK+FYGLDDI
Sbjct: 192 SKQTLERNGVKQRKYDDQIVIAFPYRRNGGLISCKYRDINKMFWQEANTEKIFYGLDDIV 251
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
G SDIIIVEGEMDKL+MEEAGFLNCVSVPDGAP S+S K +P +++D KYQYLWNCK L
Sbjct: 252 GHSDIIIVEGEMDKLAMEEAGFLNCVSVPDGAPPSISSKELPPQDKDKKYQYLWNCKDEL 311
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
K+A+R+ILATDGDPPGQALAEELARR+G+E+CWRVRWP+K+ D+ KDANEVLMYLGP A
Sbjct: 312 KKATRVILATDGDPPGQALAEELARRIGKEKCWRVRWPRKSRSDNCKDANEVLMYLGPDA 371
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 301
LKEV+ENAELYPI GLFNFRDYFDEIDAYYHRT G + GISTGW LN+LYNV+PGELTI
Sbjct: 372 LKEVIENAELYPIRGLFNFRDYFDEIDAYYHRTLGYDIGISTGWNNLNDLYNVVPGELTI 431
Query: 302 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361
VTGVPNSGKSEWIDAL+CN+NE GWKF LCSMENKVREHARKLLEKH+KKPFF YG
Sbjct: 432 VTGVPNSGKSEWIDALLCNLNEIVGWKFALCSMENKVREHARKLLEKHLKKPFFNERYGE 491
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
S ERM+VEEFEQGK WLS+TFSLIRCE+DSLP+I WVLDLAKAAVLRHGVRGLVIDPYNE
Sbjct: 492 SVERMSVEEFEQGKLWLSDTFSLIRCEDDSLPNISWVLDLAKAAVLRHGVRGLVIDPYNE 551
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
LDHQRP +QTETEYVSQMLT++KRFAQHH CHVWFVAHPRQLHNWVG PPNLYDISGSAH
Sbjct: 552 LDHQRPPNQTETEYVSQMLTLIKRFAQHHGCHVWFVAHPRQLHNWVGGPPNLYDISGSAH 611
Query: 482 FINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
FINKCDNGIVIHRNRDPEAGPID+VQVCVRKVRNKV GTIGEA L YNRVTGEY
Sbjct: 612 FINKCDNGIVIHRNRDPEAGPIDQVQVCVRKVRNKVAGTIGEAILLYNRVTGEY 665
>gi|224056777|ref|XP_002299018.1| predicted protein [Populus trichocarpa]
gi|222846276|gb|EEE83823.1| predicted protein [Populus trichocarpa]
Length = 658
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/563 (73%), Positives = 469/563 (83%), Gaps = 26/563 (4%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRA------- 54
CFRAKCGW G T + + + K SK+K IREITE SLELEPL +E+ A
Sbjct: 80 CFRAKCGWNGGTKPFAGSKSTYGTSLKLSKVKEIREITEQSLELEPLCDEVVALSFYLCV 139
Query: 55 -----------------YFAERLISAETLRRNRVMQKRHGH--EVVIAFPYWRNGKLVNC 95
YF ERLISAETL RN+VMQK +G +V IAF Y RNG LV+C
Sbjct: 140 LILILSCMMLIWVMLVCYFKERLISAETLARNQVMQKGYGDRGQVAIAFTYRRNGVLVSC 199
Query: 96 KYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPS 155
KYRD NK+FWQEKDT+KVFYGLDDI+G +IIIVEGEMDKL+MEEAGF NCVSVPDGAP
Sbjct: 200 KYRDINKRFWQEKDTKKVFYGLDDIKGADEIIIVEGEMDKLAMEEAGFRNCVSVPDGAPP 259
Query: 156 SVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWR 215
SVS K +P ++DTKYQYLWNCK YL + SRIILATDGDPPGQALAEELARR+GRERCWR
Sbjct: 260 SVSPKELPPNQEDTKYQYLWNCKEYLDKVSRIILATDGDPPGQALAEELARRLGRERCWR 319
Query: 216 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTS 275
V+WPKKN +HFKDANEVLM+ GP AL++++ENAELYPI GLF F DYF EIDAYY+RT
Sbjct: 320 VKWPKKNTDEHFKDANEVLMFSGPLALRDIIENAELYPIRGLFQFSDYFPEIDAYYNRTL 379
Query: 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
G EFG STGW ALNE+YNV+PGELT+VTGVPNSGKSEWIDAL+CN+NE GWKF LCSME
Sbjct: 380 GYEFGASTGWTALNEIYNVMPGELTLVTGVPNSGKSEWIDALLCNLNESVGWKFALCSME 439
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
N VR+HARKLLEKH+KKPFF+A YG SAERM+ +E E+GK WLS+TF LIRCE+D+LP+I
Sbjct: 440 NNVRQHARKLLEKHMKKPFFDARYGESAERMSAKELEEGKQWLSDTFYLIRCEDDALPNI 499
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
KWVLDLA+AAVLRHGVRGLVIDPYNELDHQRP + TETEYVSQMLT++KRFAQHHACHVW
Sbjct: 500 KWVLDLARAAVLRHGVRGLVIDPYNELDHQRPPNMTETEYVSQMLTLIKRFAQHHACHVW 559
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
VAHPRQL NW G+PPNLYDISGSAHF+NKCDNGIVIHRNR+P AGPID+VQV VRKVRN
Sbjct: 560 LVAHPRQLQNWTGQPPNLYDISGSAHFVNKCDNGIVIHRNRNPNAGPIDQVQVLVRKVRN 619
Query: 516 KVVGTIGEAFLSYNRVTGEYMDI 538
KV GTIG+AFLSYNRVTGE+M++
Sbjct: 620 KVAGTIGDAFLSYNRVTGEFMNV 642
>gi|356532467|ref|XP_003534794.1| PREDICTED: uncharacterized protein LOC100804637 [Glycine max]
Length = 679
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/535 (78%), Positives = 474/535 (88%), Gaps = 4/535 (0%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR KCGWKGST A +N +++ L + +K IR+ITE+ LELEPL +EL YF+ERLI
Sbjct: 135 CFRGKCGWKGSTQAFAGSNSARTQL---APVKKIRKITEEELELEPLCDELVTYFSERLI 191
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN V Q+++ ++VIAFPY +NG L++CKYRD NK FWQE +TEK+FYGLDDI
Sbjct: 192 SKQTLERNGVKQRKYDDQIVIAFPYHQNGGLISCKYRDINKMFWQEANTEKIFYGLDDIV 251
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS-KKNVPSEEQDTKYQYLWNCKMY 180
G +DIIIVEGEMDKL+MEEAGF NCVSVPDGAP SVS K+ +P +++D KYQYLWNCK
Sbjct: 252 GHNDIIIVEGEMDKLAMEEAGFFNCVSVPDGAPPSVSSKEELPPQDKDKKYQYLWNCKDE 311
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
LK+A+R+ILATDGDPPGQALAEELARR+G+E+CWRVRWP+K+ D+ KDANEVLMYLGP
Sbjct: 312 LKKATRVILATDGDPPGQALAEELARRIGKEKCWRVRWPRKSRSDNCKDANEVLMYLGPD 371
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT 300
ALKEV+ENAELYPI GLFNFRDYFDEIDAYYHRT G + GISTGW LN+LYNV+PGELT
Sbjct: 372 ALKEVIENAELYPIRGLFNFRDYFDEIDAYYHRTLGYDIGISTGWNNLNDLYNVVPGELT 431
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
IVTGVPNSGKSEWIDAL+CN+NE AGWKF LCSMENKVREHARKLLEKH+KKPFF YG
Sbjct: 432 IVTGVPNSGKSEWIDALLCNLNEIAGWKFALCSMENKVREHARKLLEKHLKKPFFNERYG 491
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
S ERM+VEEFEQGK WLS+TFSLIRCE++SLP+I WVLDLAKAAVLRHGVRGLVIDPYN
Sbjct: 492 ESVERMSVEEFEQGKLWLSDTFSLIRCEDNSLPNISWVLDLAKAAVLRHGVRGLVIDPYN 551
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
ELDHQRP +QTETEYVSQMLT++KRFAQHH CHVWFVAHPRQLHNWVG+PPNLYDISGSA
Sbjct: 552 ELDHQRPPNQTETEYVSQMLTLIKRFAQHHGCHVWFVAHPRQLHNWVGDPPNLYDISGSA 611
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
HFINKCDNGIVIHRNRDPE+GPID+VQVCVRKVRNKV GTIGEA L YNRVTGEY
Sbjct: 612 HFINKCDNGIVIHRNRDPESGPIDQVQVCVRKVRNKVAGTIGEAMLLYNRVTGEY 666
>gi|255564299|ref|XP_002523146.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537553|gb|EEF39177.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 700
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/540 (74%), Positives = 461/540 (85%), Gaps = 12/540 (2%)
Query: 2 CFRAKCGWKGSTSALVDNNRS------QSSLKKFSKMKTIREITEDSLELEPLGNELRAY 55
CFR KCGW G T L+ + + +SS++ K+K R+IT + L L+PL E+ +
Sbjct: 155 CFRGKCGWNGGTKLLLVQSYAGRHSTYESSVQP-KKVKLTRKITVEGLGLQPLCTEILGF 213
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFY 115
FAERLISAETL RNRVMQ+ +G+++VIAF YWRNG+L +CKYRD NK FWQE DT+K+FY
Sbjct: 214 FAERLISAETLHRNRVMQRSYGNQIVIAFTYWRNGELTSCKYRDINKNFWQESDTDKIFY 273
Query: 116 GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
GLDDI+ DIIIVEGEMDKL+MEEAGF NCVSVPDGAP VS+K +PS+EQDTKYQYLW
Sbjct: 274 GLDDIKETDDIIIVEGEMDKLAMEEAGFRNCVSVPDGAPGQVSQKELPSKEQDTKYQYLW 333
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 235
NCK YL +ASRIILATDGDPPGQALAEE+ARR+GRERCWR+RWPKK+ HFKDANEVLM
Sbjct: 334 NCKEYLDKASRIILATDGDPPGQALAEEIARRIGRERCWRIRWPKKSKDTHFKDANEVLM 393
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
YLGP AL+EV++NAELYPI GLFNF +YFDEIDAYYHRT G E+G STGW +L+ LYNV+
Sbjct: 394 YLGPTALREVIDNAELYPISGLFNFMEYFDEIDAYYHRTLGLEYGASTGWSSLDGLYNVM 453
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
PGELTIVTGVPNSGKSEWIDAL+CN+N GWKF LCSMEN+VREHARKLLEK IKKPFF
Sbjct: 454 PGELTIVTGVPNSGKSEWIDALLCNLNRSVGWKFALCSMENRVREHARKLLEKRIKKPFF 513
Query: 356 EANY-----GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 410
+A Y G +RM VEEFE+GK WL++TF LIRCE+D LPS+ WVL LA+AAVLRHG
Sbjct: 514 DARYASDIDGQFVKRMNVEEFEEGKQWLADTFYLIRCEDDKLPSVDWVLKLARAAVLRHG 573
Query: 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 470
VRGLVIDPYNELDHQRP+S TETEYVS+MLT++KRFAQHH CHVWFVAHPRQL NW G P
Sbjct: 574 VRGLVIDPYNELDHQRPISMTETEYVSRMLTLIKRFAQHHLCHVWFVAHPRQLQNWTGSP 633
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
PNLYDISGSAHFINKCDNGIV+HRNRDPEAG ID+VQ+CVRKVRNKVVGTIG+AFLSYNR
Sbjct: 634 PNLYDISGSAHFINKCDNGIVVHRNRDPEAGAIDQVQICVRKVRNKVVGTIGDAFLSYNR 693
>gi|449488512|ref|XP_004158064.1| PREDICTED: twinkle protein, mitochondrial-like [Cucumis sativus]
Length = 679
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/523 (76%), Positives = 450/523 (86%)
Query: 15 ALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQK 74
A D S L + + + IR+IT +SL+LEPL ++L YFAERLIS +TL RN VMQK
Sbjct: 145 AFADGRSSYKHLGQVALKQNIRKITVESLQLEPLCDQLVDYFAERLISKQTLLRNSVMQK 204
Query: 75 RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMD 134
R +++ +AF Y+R G L++CKYRD NKKFWQE +TE++FYG+DDI+G SDIIIVEGEMD
Sbjct: 205 RSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDIDGASDIIIVEGEMD 264
Query: 135 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 194
KLSM EAG NCVSVPDGAP+SVS+K+VP ++D K+Q+LWNCK YL +ASRIILATDGD
Sbjct: 265 KLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYLNKASRIILATDGD 324
Query: 195 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPI 254
PGQALAEE+ARRVGRERCWRV+WPKKN+VDHFKDANEVLMYLGP ALKEVV+NAELYPI
Sbjct: 325 TPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVLMYLGPEALKEVVDNAELYPI 384
Query: 255 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWI 314
GLF F+DYF EIDAYYH+ G+EFG+ TGWR LN+LYNV+PGELTIVTGVPNSGKSEWI
Sbjct: 385 SGLFRFKDYFHEIDAYYHKKFGNEFGVPTGWRCLNDLYNVVPGELTIVTGVPNSGKSEWI 444
Query: 315 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374
DAL+CN+N AGWKF LCSMENKVREH RKLLEKHIKKPFF YGGS ER++ EE EQG
Sbjct: 445 DALLCNLNASAGWKFALCSMENKVREHGRKLLEKHIKKPFFVGRYGGSVERLSDEELEQG 504
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
K WL +TF L+R E DSLPSI WVLDLAKAAVLRHGV GLVIDPYNELDHQR +QTETE
Sbjct: 505 KQWLDDTFFLLRSEKDSLPSISWVLDLAKAAVLRHGVSGLVIDPYNELDHQRLPNQTETE 564
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
YVSQMLT VKRFAQHH CHVWFVAHPRQL NW G PPN+YDISGSAHFINKCDNGIVIHR
Sbjct: 565 YVSQMLTKVKRFAQHHGCHVWFVAHPRQLQNWSGSPPNMYDISGSAHFINKCDNGIVIHR 624
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
NRDPE+GPID VQVCVRKVRNKV GTIGEA+L YNRVTGE++D
Sbjct: 625 NRDPESGPIDLVQVCVRKVRNKVAGTIGEAYLEYNRVTGEFLD 667
>gi|413943393|gb|AFW76042.1| hypothetical protein ZEAMMB73_832314 [Zea mays]
Length = 736
Score = 818 bits (2113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/547 (70%), Positives = 449/547 (82%), Gaps = 12/547 (2%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSL-----------KKFSKMKTIREITEDSLELEPLGN 50
CFR+KCGW+G A N SQ K + K R+I+++ L LEPL +
Sbjct: 154 CFRSKCGWRGFVQADGVTNISQGKSGIESETDQEVEAKKAANKVYRKISDEDLNLEPLCD 213
Query: 51 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
EL YFA R+ISAETLRRN+VMQ+ +++ IAF Y R+G LV CKYR +K F QE +T
Sbjct: 214 ELVEYFATRMISAETLRRNKVMQRNWNNKISIAFTYRRDGALVGCKYRAVDKTFSQEANT 273
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTK 170
EK+FYGLDDI+ D+IIVEGE+DKLSM+EAG+ NCVSVPDGAP VS K +P +EQD K
Sbjct: 274 EKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSK-IPDQEQDKK 332
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
Y YLWNCK YL ASRIILATD D PGQALAEELARR+G+ERCWRV WPKKND D KDA
Sbjct: 333 YSYLWNCKDYLDSASRIILATDNDRPGQALAEELARRLGKERCWRVNWPKKNDTDTCKDA 392
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
NEVLM+LGP AL++V+E+AELYPI GLF+F +F EID Y+ GDE GI TGW+++++
Sbjct: 393 NEVLMFLGPQALRKVIEDAELYPIRGLFSFEQFFPEIDNYFLGIHGDELGIHTGWKSMDD 452
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
LY V+PGELT+VTGVPNSGKSEWIDAL+CNIN+ +GWKFVLCSMENKV+EHARKLLEKHI
Sbjct: 453 LYKVVPGELTVVTGVPNSGKSEWIDALLCNINKQSGWKFVLCSMENKVKEHARKLLEKHI 512
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 410
+KPFF A YGGSA+RMT +EFE GK WL+ TF LIRCE+DSLPSI WVLDLAKAAVLRHG
Sbjct: 513 QKPFFNARYGGSAQRMTPDEFEAGKQWLNKTFHLIRCEDDSLPSINWVLDLAKAAVLRHG 572
Query: 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 470
VRGLVIDPYNELDHQRP +QTETEYVSQ+LT +KRFAQHH+CHVWFVAHPRQL NW G P
Sbjct: 573 VRGLVIDPYNELDHQRPSNQTETEYVSQILTKIKRFAQHHSCHVWFVAHPRQLQNWNGGP 632
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
PN+YDISGSAHFINKCDNGIVIHRNRDP AGP+D VQVCVRKVRNKVVG IG+AFL+Y+R
Sbjct: 633 PNIYDISGSAHFINKCDNGIVIHRNRDPNAGPLDTVQVCVRKVRNKVVGQIGDAFLTYDR 692
Query: 531 VTGEYMD 537
VTGE+ D
Sbjct: 693 VTGEFKD 699
>gi|302141745|emb|CBI18948.3| unnamed protein product [Vitis vinifera]
Length = 696
Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/538 (71%), Positives = 439/538 (81%), Gaps = 10/538 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
C R KCGW+G T A + S L + +K+K REITE SL LEPL EL AYF ER+I
Sbjct: 162 CHRGKCGWRGDTRAFANGRSSYGRLNQITKIKPKREITEKSLGLEPLCRELIAYFGERMI 221
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN VMQK +G E +IAF Y RNG V+CKYRD NK FWQE+DTEK+FYG+DDI+
Sbjct: 222 SEKTLARNSVMQKTYGDEFIIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIK 281
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
SDIIIVEGE+DKLSMEEAGF NCVSVP+GAP+SVS K S+E+DTKYQYLWNCK YL
Sbjct: 282 AASDIIIVEGEIDKLSMEEAGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYL 341
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
++ASRIILATDGD PG ALAEELARR+GRERCWRV+WPKKN+VDHFKDANEVLMYLGP A
Sbjct: 342 EKASRIILATDGDSPGLALAEELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDA 401
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELT 300
LKEV+ENAELYPI GLFNF YFDEIDAYYH+ G E G++TGWR LN LYNV L
Sbjct: 402 LKEVIENAELYPIQGLFNFSHYFDEIDAYYHQALGFELGVATGWRGLNGLYNVSTIFHLL 461
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
+ T + SG + L+ I + + VREHARKLLEKHIKKPFF+A YG
Sbjct: 462 LFTMLVQSGAVDHWGILLERICQ---------KLSGLVREHARKLLEKHIKKPFFDAGYG 512
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
S ERM++EEFE GK WLS TF LIRCENDSLP+IKWVLDLAKAAVLRHGVRGLVIDPYN
Sbjct: 513 ESIERMSIEEFELGKKWLSETFYLIRCENDSLPNIKWVLDLAKAAVLRHGVRGLVIDPYN 572
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
ELDHQRP +QTETEYVSQMLT++KRFAQHH+CHVWFVAHPRQLH+W G PPN+YDISGSA
Sbjct: 573 ELDHQRPANQTETEYVSQMLTIIKRFAQHHSCHVWFVAHPRQLHHWDGGPPNMYDISGSA 632
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
HFINKCDNGIVIHRNR+P+AGP+D+VQVCVRKVRNKV+GT G+AFLSY+R+TG Y D+
Sbjct: 633 HFINKCDNGIVIHRNRNPDAGPVDQVQVCVRKVRNKVIGTTGDAFLSYDRITGVYTDV 690
>gi|242093886|ref|XP_002437433.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
gi|241915656|gb|EER88800.1| hypothetical protein SORBIDRAFT_10g026990 [Sorghum bicolor]
Length = 770
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/556 (69%), Positives = 447/556 (80%), Gaps = 21/556 (3%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSL-----------KKFSKMKTIREITEDSLELEPLGN 50
CFR+KCGW+G A N SQ K + K R++ E+ L LEPL +
Sbjct: 160 CFRSKCGWRGFIQADGVTNISQGKTDIESETDQEVESKKTANKVYRKVIEEDLNLEPLCD 219
Query: 51 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
EL YF+ R+ISAETLRRN+VMQ+ +++ IAF Y R+G LV CKYR +K F QE +T
Sbjct: 220 ELVEYFSTRMISAETLRRNKVMQRNWNNKISIAFTYRRDGVLVGCKYRAVDKTFSQEPNT 279
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTK 170
EK+FYGLDDI+ D+IIVEGE+DKLSM+EAG+ NCVSVPDGAP VS K +P +EQD K
Sbjct: 280 EKIFYGLDDIKRAHDVIIVEGEIDKLSMDEAGYRNCVSVPDGAPPKVSSK-IPDKEQDKK 338
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
Y YLWNCK YL ASRIILATD D PGQALAEELARR+G+ERCWRV+WPKKND D KDA
Sbjct: 339 YNYLWNCKDYLDSASRIILATDDDGPGQALAEELARRLGKERCWRVKWPKKNDTDTCKDA 398
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
NEVLM+LGP AL++V+E+AELYPI GLF+F+D+F EID Y+ GDE GI TGW++L++
Sbjct: 399 NEVLMFLGPQALRKVIEDAELYPIRGLFSFKDFFPEIDNYFLGIHGDELGIHTGWKSLDD 458
Query: 291 LYN---------VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
LY V+PGELT+VTGVPNSGKSEWIDAL+CNIN GWKFVLCSMENKV+EH
Sbjct: 459 LYKYHLNRLTWLVVPGELTVVTGVPNSGKSEWIDALLCNINTQCGWKFVLCSMENKVKEH 518
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
ARKLLEK I KPFF+A YGG A+RMT ++FE GK WL+ TF LIRCE+DSLPSI WVLDL
Sbjct: 519 ARKLLEKRIGKPFFDARYGGDAQRMTPDDFEAGKEWLNETFHLIRCEDDSLPSINWVLDL 578
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
AKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQ+LT VKRFAQHH+CHVWFVAHPR
Sbjct: 579 AKAAVLRHGVRGLVIDPYNELDHQRPSNQTETEYVSQILTKVKRFAQHHSCHVWFVAHPR 638
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521
QLHNW G PPN+YDISGSAHFINKCDNGIVIHRNRD AGP+D VQVCVRKVRNKV+G I
Sbjct: 639 QLHNWNGGPPNMYDISGSAHFINKCDNGIVIHRNRDQNAGPLDVVQVCVRKVRNKVIGQI 698
Query: 522 GEAFLSYNRVTGEYMD 537
G+AFL+Y+RVTG+Y D
Sbjct: 699 GDAFLTYDRVTGQYKD 714
>gi|27311757|gb|AAO00844.1| Unknown protein [Arabidopsis thaliana]
Length = 709
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/537 (67%), Positives = 445/537 (82%), Gaps = 8/537 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI-REITEDSLELEPLGNELRAYFAERL 60
CFR KCG KG R+ L ++ + R+IT + +ELEPL +E++ YFA R
Sbjct: 164 CFRGKCGLKGGV-------RADGGLASADPIEKVERKITVEGIELEPLCDEIQDYFAARA 216
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RNRVMQKR G E+VIAF YW+ G+LV+CKYR K F+QE+ T ++ YGLDDI
Sbjct: 217 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDI 276
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
E S++IIVEGE+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++DTKY++LWNC Y
Sbjct: 277 EKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDY 336
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
LK+ASRI++ATDGD PGQA+AEE+ARR+G+ERCWRV+WPKK++ +HFKDANEVLM GP
Sbjct: 337 LKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPH 396
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT 300
LKE + +AE YPI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT
Sbjct: 397 LLKEAILDAEPYPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELT 456
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
+VTG+PNSGKSEWIDA++CN+N GWKF LCSMENKVR+HARKLLEKHIKKPFF+A+YG
Sbjct: 457 VVTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYG 516
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
S +RM+VEE ++GK WL++TF IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYN
Sbjct: 517 RSVQRMSVEEKDEGKKWLNDTFYPIRCEMDSLPSINWVLERAKAAVLRYGIRGLVIDPYN 576
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
ELDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G PNLYDISGSA
Sbjct: 577 ELDHQRTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSA 636
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
HFINKCDNGI++HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 637 HFINKCDNGIIVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 693
>gi|30692010|ref|NP_849735.1| toprim domain-containing protein [Arabidopsis thaliana]
gi|209529811|gb|ACI49800.1| At1g30680 [Arabidopsis thaliana]
gi|332193138|gb|AEE31259.1| toprim domain-containing protein [Arabidopsis thaliana]
Length = 709
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/537 (67%), Positives = 445/537 (82%), Gaps = 8/537 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI-REITEDSLELEPLGNELRAYFAERL 60
CFR KCG KG R+ L ++ + R+IT + +ELEPL +E++ YFA R
Sbjct: 164 CFRGKCGLKGGV-------RADGGLASADPIEKVERKITVEGIELEPLCDEIQDYFAARA 216
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RNRVMQKR G E+VIAF YW+ G+LV+CKYR K F+QE+ T ++ YGLDDI
Sbjct: 217 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQERKTRRILYGLDDI 276
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
E S++IIVEGE+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++DTKY++LWNC Y
Sbjct: 277 EKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDKDTKYKFLWNCNDY 336
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
LK+ASRI++ATDGD PGQA+AEE+ARR+G+ERCWRV+WPKK++ +HFKDANEVLM GP
Sbjct: 337 LKKASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFKDANEVLMSKGPH 396
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT 300
LKE + +AE YPI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L+ LY+V+PGELT
Sbjct: 397 LLKEAILDAEPYPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNLDNLYSVVPGELT 456
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
+VTG+PNSGKSEWIDA++CN+N GWKF LCSMENKVR+HARKLLEKHIKKPFF+A+YG
Sbjct: 457 VVTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKVRDHARKLLEKHIKKPFFDADYG 516
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
S +RM+VEE ++GK WL++TF IRCE DSLPSI WVL+ AKAAVLR+G+RGLVIDPYN
Sbjct: 517 RSVQRMSVEEKDEGKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLRYGIRGLVIDPYN 576
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
ELDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G PNLYDISGSA
Sbjct: 577 ELDHQRTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDGGAPNLYDISGSA 636
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
HFINKCDNGI++HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y+R TG Y D
Sbjct: 637 HFINKCDNGIIVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCYDRTTGSYSD 693
>gi|218198730|gb|EEC81157.1| hypothetical protein OsI_24073 [Oryza sativa Indica Group]
gi|222636070|gb|EEE66202.1| hypothetical protein OsJ_22328 [Oryza sativa Japonica Group]
Length = 698
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/547 (68%), Positives = 440/547 (80%), Gaps = 25/547 (4%)
Query: 2 CFRAKCGWKGSTS-------ALVDNNR----SQSSLKKFSKMKTIREITEDSLELEPLGN 50
CFRA CGWKG + NN Q + K R+I E+ L LEPL +
Sbjct: 142 CFRANCGWKGFVEPDGVLKLSQAKNNTECETDQDGEANLAVNKVYRKICEEDLHLEPLCD 201
Query: 51 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
EL YF+ER+IS ETLRRN VMQ+ +++VIAF Y R+G LV CKYR+ +KKF QE +T
Sbjct: 202 ELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGVLVGCKYREVSKKFSQEANT 261
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTK 170
EK+ YGLDDI+ DIIIVEGE+DKLSMEEAG+ NCVSVPDGAP VS K +P ++QD K
Sbjct: 262 EKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPDGAPPKVSSK-LPDKDQDKK 320
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
YQYLWNCK YL ASRIILATD DPPGQALAEELARR+G+ERCWRV WPKKN+ + KDA
Sbjct: 321 YQYLWNCKEYLDPASRIILATDADPPGQALAEELARRLGKERCWRVNWPKKNENEICKDA 380
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
NEVLM+LGP AL++V+E+AELYPI GLF+F+D+F EID YY GDE G+ TGW++++E
Sbjct: 381 NEVLMFLGPQALRKVIEDAELYPIRGLFSFKDFFPEIDNYYLGIRGDELGVPTGWKSMDE 440
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
LY V+PGELT+VTGVPNSGKSEWIDAL+CNIN+ +VREHARKLLEK I
Sbjct: 441 LYKVVPGELTVVTGVPNSGKSEWIDALLCNIND-------------QVREHARKLLEKRI 487
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 410
KKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D LPS+ WVL+LAKAAVLR+G
Sbjct: 488 KKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDCLPSVNWVLELAKAAVLRYG 547
Query: 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 470
VRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+CHVWFVAHPRQLHNW G P
Sbjct: 548 VRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHSCHVWFVAHPRQLHNWNGGP 607
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
PN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVRKVRNKV+G IG+AFLSY R
Sbjct: 608 PNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVRKVRNKVIGQIGDAFLSYER 667
Query: 531 VTGEYMD 537
V+GE+ D
Sbjct: 668 VSGEFRD 674
>gi|52076993|dbj|BAD46002.1| unknown protein [Oryza sativa Japonica Group]
gi|52077236|dbj|BAD46279.1| unknown protein [Oryza sativa Japonica Group]
gi|300116969|dbj|BAJ10651.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 695
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/547 (68%), Positives = 439/547 (80%), Gaps = 28/547 (5%)
Query: 2 CFRAKCGWKGSTS-------ALVDNNR----SQSSLKKFSKMKTIREITEDSLELEPLGN 50
CFRA CGWKG + NN Q + K R+I E+ L LEPL +
Sbjct: 142 CFRANCGWKGFVEPDGVLKLSQAKNNTECETDQDGEANLAVNKVYRKICEEDLHLEPLCD 201
Query: 51 ELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
EL YF+ER+IS ETLRRN VMQ+ +++VIAF Y R+G LV CKYR+ +KKF QE +T
Sbjct: 202 ELVTYFSERMISPETLRRNSVMQRNWSNKIVIAFTYRRDGVLVGCKYREVSKKFSQEANT 261
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTK 170
EK+ YGLDDI+ DIIIVEGE+DKLSMEEAG+ NCVSVPDGAP VS K +P ++Q
Sbjct: 262 EKILYGLDDIKRARDIIIVEGEIDKLSMEEAGYRNCVSVPDGAPPKVSSK-LPDKDQ--- 317
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
ASRIILATD DPPGQALAEELARR+G+ERCWRV WPKKN+ + KDA
Sbjct: 318 -------------ASRIILATDADPPGQALAEELARRLGKERCWRVNWPKKNENEICKDA 364
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
NEVLM+LGP AL++V+E+AELYPI GLF+F+D+F EID YY GDE G+ TGW++++E
Sbjct: 365 NEVLMFLGPQALRKVIEDAELYPIRGLFSFKDFFPEIDNYYLGIRGDELGVPTGWKSMDE 424
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
LY V+PGELT+VTGVPNSGKSEWIDAL+CNIN+ GWKFVLCSMENKVREHARKLLEK I
Sbjct: 425 LYKVVPGELTVVTGVPNSGKSEWIDALLCNINDQVGWKFVLCSMENKVREHARKLLEKRI 484
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 410
KKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D LPS+ WVL+LAKAAVLR+G
Sbjct: 485 KKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDCLPSVNWVLELAKAAVLRYG 544
Query: 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP 470
VRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+CHVWFVAHPRQLHNW G P
Sbjct: 545 VRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHSCHVWFVAHPRQLHNWNGGP 604
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
PN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVRKVRNKV+G IG+AFLSY R
Sbjct: 605 PNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVRKVRNKVIGQIGDAFLSYER 664
Query: 531 VTGEYMD 537
V+GE+ D
Sbjct: 665 VSGEFRD 671
>gi|297846012|ref|XP_002890887.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297336729|gb|EFH67146.1| toprim domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 774
Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/558 (63%), Positives = 432/558 (77%), Gaps = 45/558 (8%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI-REITEDSLELEPLGNELRAYFAERL 60
CFR KCG KG R+ L ++ + R+IT + +ELEPL +E++ YFA R
Sbjct: 224 CFRGKCGLKGGV-------RADGRLASADPIEKVERKITVEGIELEPLCDEIQDYFAARA 276
Query: 61 ISAETLRRNRVMQKRHGHE---------------------VVIAFPYWRNGKLVNCKYRD 99
IS +TL RNRVMQKR G E +VIAF YW+ G+LV+CKYR
Sbjct: 277 ISRKTLERNRVMQKRIGDEFRNPDLSSYMIGSSPVCPTLLIVIAFTYWQRGELVSCKYRS 336
Query: 100 FNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK 159
K+F+QE++T ++ YGLDDIE S+IIIVEGE+DKL+MEEAGF NCVSVPDGAP+SVS
Sbjct: 337 LTKRFFQERNTRRILYGLDDIEKTSEIIIVEGEIDKLAMEEAGFRNCVSVPDGAPASVSS 396
Query: 160 KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 219
K PSE++ ASRI++ATDGD PGQALAEE+ARR+G+ERCWRV+WP
Sbjct: 397 KETPSEDK----------------ASRIVIATDGDGPGQALAEEIARRLGKERCWRVKWP 440
Query: 220 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
+K++ +HFKDANEVLM GP LKE + NAE YPI GLF F+D+FDEIDAYYHRT G E+
Sbjct: 441 EKSEDEHFKDANEVLMSKGPHLLKEAILNAEPYPIRGLFPFKDFFDEIDAYYHRTHGHEY 500
Query: 280 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
G+STGW+ L+ Y+V+PGELT+VTG+PNSGKSEWIDA++CN+N GWKF LCSMENKVR
Sbjct: 501 GVSTGWKNLDNFYSVVPGELTVVTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKVR 560
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
+H RKLLEKH+KKPFF+A+YG S +RM VEE ++GK WL++TFSLIRCE DSLPSI+WVL
Sbjct: 561 DHGRKLLEKHVKKPFFDADYGRSVQRMNVEELDEGKQWLNDTFSLIRCEMDSLPSIEWVL 620
Query: 400 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
+ AKAAVLR+G+RGLVIDPYNELDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAH
Sbjct: 621 ERAKAAVLRYGIRGLVIDPYNELDHQRTSRQTETEYVSQMLTKIKRFSQHHSCHVWFVAH 680
Query: 460 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVG 519
P+QL +W G PNLYDISGSAHFINKCDNGI++HRNRD +AGP+D VQ+ VRKVRNKV G
Sbjct: 681 PKQLQHWDGGAPNLYDISGSAHFINKCDNGIIVHRNRDEKAGPLDLVQIGVRKVRNKVAG 740
Query: 520 TIGEAFLSYNRVTGEYMD 537
IG+A+L Y+R TG Y D
Sbjct: 741 QIGDAYLCYDRATGLYSD 758
>gi|168040643|ref|XP_001772803.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675880|gb|EDQ62370.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 630
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/546 (63%), Positives = 422/546 (77%), Gaps = 8/546 (1%)
Query: 1 MCFRAKCGWKGS-------TSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELR 53
+C RAKCGWKGS +S V N + + K + ++ T +SL LE + +++
Sbjct: 83 ICHRAKCGWKGSAWAGPLASSVGVKGNGAFKAAKVTKRPVLKKDYTAESLGLEVVQDKVL 142
Query: 54 AYFAERLISAETLRRNRVMQK-RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 112
+YF +R +S ET+R+N V Q + ++ IAFPY ++G+++NCK+RD NK+FWQ K+ K
Sbjct: 143 SYFKKRGLSEETVRQNNVAQHWANTTDLAIAFPYVQDGEILNCKFRDGNKRFWQVKNAPK 202
Query: 113 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
V YGLD I+ +I+IVEGE DKL+M EAG +NCVSVPDGAP+ VS +P +D KY+
Sbjct: 203 VLYGLDHIKDSREIVIVEGEFDKLAMYEAGIVNCVSVPDGAPAKVSGDELPPPNEDKKYE 262
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YLWNCK Y K A+RIILATD D PGQALAEELARR+GRERCWRV WP+ KDANE
Sbjct: 263 YLWNCKDYFKNATRIILATDADEPGQALAEELARRLGRERCWRVTWPEDESGKQCKDANE 322
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
VLM LGP A+K+++++AELYPI GLFNF+ +F EID YY+ GDE G+STGWR L+E+Y
Sbjct: 323 VLMSLGPDAVKDLIKSAELYPIRGLFNFQQFFREIDDYYYLRLGDERGVSTGWRGLDEIY 382
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
V+PGELTIVTGVPNSGKSEWIDALICN+N W F LCSMENKVREHARKL+EK+I +
Sbjct: 383 RVVPGELTIVTGVPNSGKSEWIDALICNLNRSKKWTFGLCSMENKVREHARKLIEKYIHQ 442
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
PFF+A Y S RM E+ E+GK WL + F LIR E++ LPS+ WVL+LAKAAV+RHG+R
Sbjct: 443 PFFDAPYANSTPRMDKEDLEKGKKWLQDNFFLIRHEDEELPSVDWVLNLAKAAVMRHGIR 502
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 472
GLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH CHVWFVAHPRQL W GE P
Sbjct: 503 GLVIDPYNELDHQRPGNQTETEYVSQMLTKIKRFAQHHDCHVWFVAHPRQLQVWRGEAPG 562
Query: 473 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 532
LYDISGSAHFINKCDNGIVIHRNRD AGP+D+V+V VRKVRNK GTIGEA L YNRVT
Sbjct: 563 LYDISGSAHFINKCDNGIVIHRNRDETAGPLDQVKVLVRKVRNKAAGTIGEATLRYNRVT 622
Query: 533 GEYMDI 538
G+Y D+
Sbjct: 623 GDYEDV 628
>gi|4587524|gb|AAD25755.1|AC007060_13 T5I8.13 [Arabidopsis thaliana]
Length = 670
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/549 (61%), Positives = 412/549 (75%), Gaps = 49/549 (8%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI-REITEDSLELEPLGNELRAYFAERL 60
CFR KCG KG R+ L ++ + R+IT + +ELEPL +E++ YFA R
Sbjct: 142 CFRGKCGLKGGV-------RADGGLASADPIEKVERKITVEGIELEPLCDEIQDYFAARA 194
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ------------EK 108
IS +TL RNRVMQKR G E+VIAF YW+ G+LV+CKYR K F+Q E+
Sbjct: 195 ISRKTLERNRVMQKRIGDEIVIAFTYWQRGELVSCKYRSLTKMFFQVHIIQIPFSIADER 254
Query: 109 DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
T ++ YGLDDIE S++IIVEGE+DKL+MEEAGFLNCVSVPDGAP+ VS K +PSE++
Sbjct: 255 KTRRILYGLDDIEKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAPAKVSSKEIPSEDK- 313
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
ASRI++ATDGD PGQA+AEE+ARR+G+ERCWRV+WPKK++ +HFK
Sbjct: 314 ---------------ASRIVIATDGDGPGQAMAEEIARRLGKERCWRVKWPKKSEDEHFK 358
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANEVLM GP LKE + +AE YPI+GLF+F+D+FDEIDAYY RT G E+G+STGW+ L
Sbjct: 359 DANEVLMSKGPHLLKEAILDAEPYPILGLFSFKDFFDEIDAYYDRTHGHEYGVSTGWKNL 418
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ LY+V+PGELT+VTG+PNSGKSEWIDA++CN+N GWKF LCSMENK A +
Sbjct: 419 DNLYSVVPGELTVVTGIPNSGKSEWIDAMLCNLNHSVGWKFALCSMENKPIAGALVI--- 475
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
YG S +RM+VEE ++GK WL++TF IRCE DSLPSI WVL+ AKAAVLR
Sbjct: 476 ----------YGRSVQRMSVEEKDEGKKWLNDTFYPIRCEMDSLPSIDWVLERAKAAVLR 525
Query: 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG 468
+G+RGLVIDPYNELDHQR QTETEYVSQMLT +KRF+QHH+CHVWFVAHP+QL +W G
Sbjct: 526 YGIRGLVIDPYNELDHQRTPRQTETEYVSQMLTKIKRFSQHHSCHVWFVAHPKQLQHWDG 585
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 528
PNLYDISGSAHFINKCDNGI++HRNRD AGP+D VQ+ VRKVRNKV G IG+A+L Y
Sbjct: 586 GAPNLYDISGSAHFINKCDNGIIVHRNRDENAGPLDLVQIGVRKVRNKVAGQIGDAYLCY 645
Query: 529 NRVTGEYMD 537
+R TG Y D
Sbjct: 646 DRTTGSYSD 654
>gi|302757125|ref|XP_002961986.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
gi|300170645|gb|EFJ37246.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii]
Length = 618
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/543 (60%), Positives = 396/543 (72%), Gaps = 7/543 (1%)
Query: 2 CFRAKCGWKGSTSALVDN----NRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFA 57
C R+ CG+ G + +N + Q + + I E + SL L+PL +++ +FA
Sbjct: 41 CHRSTCGYHGKANVPHENGSALTKRQMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFA 100
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-NKKFWQEKDT-EKVFY 115
R IS + L+RNRV Q G E+ IAFPY++ K+++CKYR K+FW+ + + FY
Sbjct: 101 TRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFY 160
Query: 116 GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
GL+DI+G +++IVEGEMDKLSMEEAG +NCVSVPDGAP + P E+D K+ YLW
Sbjct: 161 GLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLW 220
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 235
+CK + +RI LATD D PG ALAEELARR GRERCWRV WP D KDANEVL+
Sbjct: 221 DCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVV-DGKQLKDANEVLL 279
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
LGP AL+EVV +ELYPI GLF F ++F EID YYH + G STGW+ L+E Y V+
Sbjct: 280 TLGPEALREVVAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDEYYTVV 339
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
PGELTIVTGVPNSGKSEWIDAL+CN+N GW F LCSMENKV +HARKL+EKH +KPFF
Sbjct: 340 PGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHYRKPFF 399
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
EA Y S R+T EEF G WL N F LIRCEN+ LPS WVLD AKAAV R+G+RGLV
Sbjct: 400 EAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYGIRGLV 459
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 475
IDPYNELDHQR SQTETEYVSQ+LT +KRFAQHH CHVWFVAHPRQ+ NW G+PPN+YD
Sbjct: 460 IDPYNELDHQRSSSQTETEYVSQILTKIKRFAQHHDCHVWFVAHPRQMLNWQGQPPNMYD 519
Query: 476 ISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
ISGSAHFINKCDNGIV+HRNRD E GP+D+VQ+ V+KVRNK+ G IGEA L Y+R+
Sbjct: 520 ISGSAHFINKCDNGIVVHRNRDAEKGPLDQVQILVKKVRNKIAGQIGEAVLKYDRLVFVS 579
Query: 536 MDI 538
D+
Sbjct: 580 CDV 582
>gi|302775366|ref|XP_002971100.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
gi|300161082|gb|EFJ27698.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii]
Length = 618
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/543 (60%), Positives = 396/543 (72%), Gaps = 7/543 (1%)
Query: 2 CFRAKCGWKGSTSALVDN----NRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFA 57
C R+ CG+ G + +N + Q + + I E + SL L+PL +++ +FA
Sbjct: 41 CHRSTCGYHGKANVPHENGSALTKRQMAAAYHWRNPKITEFSRTSLNLQPLSDDVIKWFA 100
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-NKKFWQEKDT-EKVFY 115
R IS + L+RNRV Q G E+ IAFPY++ K+++CKYR K+FW+ + + FY
Sbjct: 101 TRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGAARRTFY 160
Query: 116 GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
GL+DI+G +++IVEGEMDKLSMEEAG +NCVSVPDGAP + P E+D K+ YLW
Sbjct: 161 GLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDKKFSYLW 220
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 235
+CK + +RI LATD D PG ALAEELARR GRERCWRV WP D KDANEVL+
Sbjct: 221 DCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVV-DGKQLKDANEVLL 279
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
LGP AL+EV+ +ELYPI GLF F ++F EID YYH + G STGW+ L+E Y V+
Sbjct: 280 TLGPEALREVIAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDEYYTVV 339
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
PGELTIVTGVPNSGKSEWIDAL+CN+N GW F LCSMENKV +HARKL+EKH +KPFF
Sbjct: 340 PGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHYRKPFF 399
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
EA Y S R+T EEF G WL N F LIRCEN+ LPS WVLD AKAAV R+G+RGLV
Sbjct: 400 EAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYGIRGLV 459
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 475
IDPYNELDHQR SQTETEYVSQ+LT +KRFAQHH CHVWFVAHPRQ+ NW G+PPN+YD
Sbjct: 460 IDPYNELDHQRSSSQTETEYVSQILTKIKRFAQHHDCHVWFVAHPRQMLNWQGQPPNMYD 519
Query: 476 ISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
ISGSAHFINKCDNGIV+HRNRD E GP+D+VQ+ V+KVRNK+ G IGEA L Y+R+
Sbjct: 520 ISGSAHFINKCDNGIVVHRNRDAEKGPLDQVQILVKKVRNKIAGQIGEAVLKYDRLVFVS 579
Query: 536 MDI 538
D+
Sbjct: 580 CDV 582
>gi|384251819|gb|EIE25296.1| DNA primase core, partial [Coccomyxa subellipsoidea C-169]
Length = 599
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/556 (56%), Positives = 390/556 (70%), Gaps = 26/556 (4%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
+C R CGW G + + ++ ++ +K K D L+PL E+ YFA+R
Sbjct: 53 ICHRGTCGWAGGCNV---SGQTSTAERKVEAAKR-----PDCSRLQPLSREVVEYFAQRG 104
Query: 61 ISAETLRRNRVMQK---RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK--DTEKVFY 115
IS TL RN V Q+ +H IAFPY+R+G+++N KYR +KKFWQ ++ Y
Sbjct: 105 ISRATLERNGVQQEYSSKHNTNA-IAFPYYRDGEIINIKYRTLDKKFWQASIFTPIRILY 163
Query: 116 GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
GLDD++ ++IIIVEGEMDKL+++EAG N +SVPDGAP +V + ++P E DTK+QYLW
Sbjct: 164 GLDDVKSSAEIIIVEGEMDKLALDEAGIRNVISVPDGAPRAVKEGDLPPPEADTKFQYLW 223
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD---------- 225
NC+ L QA RI+LATD D PGQALAEELARR+GR+RCWRVRWP +
Sbjct: 224 NCRAVLDQAVRIVLATDSDAPGQALAEELARRLGRDRCWRVRWPSEPSSTPPDAGDQGAA 283
Query: 226 --HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
KDANEVL+ GP L+ ++ A+ YPI GLF F D+ DEI + Y G+ST
Sbjct: 284 SVARKDANEVLLKDGPEPLQALIRGADPYPIRGLFKFSDFLDEIWSMYDEQDAMGQGVST 343
Query: 284 GWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 343
GW L+ Y V+PGEL+IVTGVPNSGKSEWIDAL+CN+ GW F +CSME KV++HAR
Sbjct: 344 GWSGLDNYYRVVPGELSIVTGVPNSGKSEWIDALLCNLATQHGWSFAMCSMEKKVKDHAR 403
Query: 344 KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK 403
+LLEK+I KPF +A Y G A RM ++ E+G WL F ++RCE+D LPS+ WVL LA+
Sbjct: 404 QLLEKYIGKPFLDAKYAGKAARMEAQDVEEGLQWLEERFHVVRCEDDELPSVDWVLGLAR 463
Query: 404 AAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 463
AAVLR+G+RGLVIDPYNELDHQRPV ETEYVSQMLT +KRFAQH+ HVWFVAHPRQL
Sbjct: 464 AAVLRYGIRGLVIDPYNELDHQRPVHMNETEYVSQMLTKIKRFAQHNDVHVWFVAHPRQL 523
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
W GEPPNLYDISGSAHFINK DNGIVIHRNRDPE G ++ V+V VRKVRNK GTIG+
Sbjct: 524 QGWKGEPPNLYDISGSAHFINKADNGIVIHRNRDPEQGALNHVKVLVRKVRNKAAGTIGD 583
Query: 524 AFLSYNRVTGEYMDIV 539
L Y+R TG Y D++
Sbjct: 584 CILDYDRTTGRYKDVL 599
>gi|449435922|ref|XP_004135743.1| PREDICTED: uncharacterized protein LOC101219062 [Cucumis sativus]
Length = 512
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 319/536 (59%), Positives = 359/536 (66%), Gaps = 119/536 (22%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR KCGWKG T LVD YFAERLI
Sbjct: 84 CFRGKCGWKGHT-LLVD------------------------------------YFAERLI 106
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN VMQKR +++ +AF Y+R G L++CKYRD NKKFWQE +TE++FYG+DDI+
Sbjct: 107 SKQTLLRNSVMQKRSDNQIAVAFTYYRGGALISCKYRDANKKFWQEPNTERIFYGIDDID 166
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
G SDIIIVEGEMDKLSM EAG NCVSVPDGAP+SVS+K+VP ++D K+Q+LWNCK YL
Sbjct: 167 GASDIIIVEGEMDKLSMAEAGIHNCVSVPDGAPASVSEKDVPPADKDKKFQFLWNCKDYL 226
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+ASRIILATDGD PGQALAEE+ARRVGRERCWRV+WPKKN+VDHFKDANEV +
Sbjct: 227 NKASRIILATDGDTPGQALAEEIARRVGRERCWRVKWPKKNEVDHFKDANEVGIT----- 281
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 301
D++ Y D+ IS V+PGELTI
Sbjct: 282 -----------------------DQLSFCYLHFFLDDVIISL----------VVPGELTI 308
Query: 302 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361
VTGVPNSGKSEWIDAL+CN+N AGWKF LCSMENKVREH RKLLEKHIKKPFF YGG
Sbjct: 309 VTGVPNSGKSEWIDALLCNLNASAGWKFALCSMENKVREHGRKLLEKHIKKPFFVGRYGG 368
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
S ER++ EE EQGK WL +TF L+R
Sbjct: 369 SVERLSDEELEQGKQWLDDTFFLLR----------------------------------- 393
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
TETEYVSQMLT VKRFAQHH CHVWFVAHPRQL NW G PPN+YDISGSAH
Sbjct: 394 ---------TETEYVSQMLTKVKRFAQHHGCHVWFVAHPRQLQNWSGSPPNMYDISGSAH 444
Query: 482 FINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
FINKCDNGIVIHRNRDPE+GPID VQVCVRKVRNKV GTIGEA+L YNRVTGE++D
Sbjct: 445 FINKCDNGIVIHRNRDPESGPIDLVQVCVRKVRNKVAGTIGEAYLEYNRVTGEFLD 500
>gi|145347669|ref|XP_001418285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578514|gb|ABO96578.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 592
Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/553 (53%), Positives = 376/553 (67%), Gaps = 21/553 (3%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLG-NELRA----- 54
MC RA C W G T S+ + S + + +L+ +G E+ A
Sbjct: 46 MCHRANCEWSGGTGMDGRTRASKGADGATSNRRVAKPKLPAPEDLQRIGPGEMTAAATKW 105
Query: 55 --YFAERLISAETLRRNRVMQKR------HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ 106
R IS ET RN + + G+ + FPY R+G+L+N KYR +K FWQ
Sbjct: 106 AEMLKSRGISLETAERNGLAVQSVYSPIASGYVDALCFPYMRDGELINIKYRGPDKTFWQ 165
Query: 107 EKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
K EK+ YGLDD+ GE ++I+VEGEMDKL++EEAGF N VSVPDGAP V P+ E
Sbjct: 166 VKGAEKILYGLDDVTGEEEVILVEGEMDKLALEEAGFKNVVSVPDGAPGKVKDGPTPAPE 225
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
+D KY+YLWNC+ L SR ++ATD D PGQAL+EELARR+G+ERCWRV WP +
Sbjct: 226 EDKKYEYLWNCRAQLDTISRFVIATDSDGPGQALSEELARRLGKERCWRVTWP-----EG 280
Query: 227 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGW 285
KDANE L G ++E + AE +P+ GLF F ++ EI++Y++ T+ +E G+STGW
Sbjct: 281 CKDANEALQKEGADVVRECLTTAEGFPLRGLFRFSEFAPEIESYFNMTTANELRGVSTGW 340
Query: 286 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL 345
R ++ Y ++PGELT+VTGVPNSGKSEW+DAL+CN+ GW F LCS+ENKV EHARKL
Sbjct: 341 RNIDNNYRIVPGELTVVTGVPNSGKSEWVDALMCNLAVQHGWSFALCSLENKVHEHARKL 400
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
+EK++ +P+FE Y A RM + G WL+ F LIR E+D LPS+ W+L LA+AA
Sbjct: 401 VEKYVGEPWFEGKYS-KAPRMNPDTMRSGMKWLNEHFVLIRHEDDELPSVDWILGLARAA 459
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
VLRHG+RGL+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHN
Sbjct: 460 VLRHGIRGLLIDPYNELDHKRPTGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHN 519
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
W GE P LYDISGSAHFINKCDNGIV+HRNRD + G + V + V+KVRNKV G+IG+
Sbjct: 520 WKGEAPGLYDISGSAHFINKCDNGIVVHRNRDEKLGSLREVTINVQKVRNKVAGSIGDPK 579
Query: 526 LSYNRVTGEYMDI 538
L YN G Y+DI
Sbjct: 580 LEYNVSNGRYVDI 592
>gi|255081288|ref|XP_002507866.1| predicted protein [Micromonas sp. RCC299]
gi|226523142|gb|ACO69124.1| predicted protein [Micromonas sp. RCC299]
Length = 622
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/545 (53%), Positives = 365/545 (66%), Gaps = 17/545 (3%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
MC RA C W G K +++ + +L E + R
Sbjct: 87 MCHRATCEWTGGARR---RGSGAGGAPKLPAPESLERVGPGALTDN--AKEWADWLVSRG 141
Query: 61 ISAETLRRNRVMQKR------HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 114
IS E RN V +R H + FPY R+G+LVN KYR +K FWQ K EK+
Sbjct: 142 ISLEVAERNGVAAQRVFSPAAGEHVNALVFPYMRDGELVNIKYRGSDKSFWQIKGAEKIM 201
Query: 115 YGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 174
+GLDDI G S+I+IVEGEMDKL++E+AG N VSVPDGAP V ++P+ E+D K++YL
Sbjct: 202 FGLDDIAGSSEIVIVEGEMDKLALEQAGIKNVVSVPDGAPGKVRDGDLPAPEEDRKFEYL 261
Query: 175 WNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVL 234
WNC+ L SRI++A D D PG ALAEELARR+G+ERC+RV WP+ KDAN+VL
Sbjct: 262 WNCRAALDPVSRIVIAVDSDGPGLALAEELARRLGKERCYRVTWPEG-----CKDANDVL 316
Query: 235 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYN 293
G A++ ++NAE +P+ GLF F D+ D+I Y+ + E G+STGWR+++ Y
Sbjct: 317 QKEGDAAVRGSIDNAEGFPLRGLFRFSDFQDDISNYFGVSEASEMKGVSTGWRSIDGHYR 376
Query: 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353
+PGELT+VTGVPNSGKSEW+DAL+CN+ GW F LCS+ENKV EHARKL+EK+ +P
Sbjct: 377 PVPGELTVVTGVPNSGKSEWVDALMCNLAVQHGWTFALCSLENKVHEHARKLVEKYTGEP 436
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
+FE YGG RM E G WL N F LIR E+D LPS+ W++ LA+AAV+RHG+RG
Sbjct: 437 WFEGKYGGKKARMRPETMRAGLHWLDNQFVLIRHEDDELPSVDWIIGLARAAVMRHGIRG 496
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL 473
L+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW GE P L
Sbjct: 497 LLIDPYNELDHKRPQGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNWRGEAPGL 556
Query: 474 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTG 533
YDISGSAHFINKCDNGIV+HRNRD + G + V + V KVRNKV G IG+ L YN G
Sbjct: 557 YDISGSAHFINKCDNGIVVHRNRDEKLGSLREVTIHVAKVRNKVAGAIGDPKLEYNLTNG 616
Query: 534 EYMDI 538
Y D+
Sbjct: 617 RYEDL 621
>gi|308805352|ref|XP_003079988.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
gi|116058445|emb|CAL53634.1| toprim domain-containing protein (ISS) [Ostreococcus tauri]
Length = 699
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 297/553 (53%), Positives = 374/553 (67%), Gaps = 21/553 (3%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELE--------PLGNELR 53
C RA C W G TS S+ + S + + D +L+ P +
Sbjct: 153 CHRANCEWTGGTSKEGRQRASKGADGAASNRRVAKPKLPDPADLQRIGPGNMTPAATKWS 212
Query: 54 AYFAERLISAETLRRNRVMQKR------HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE 107
+ R IS E RN + + G+ + FPY R+G+L+N KYR +K FWQ
Sbjct: 213 EFLKSRGISLEVAERNGLAVQNVYSPPASGYVDALCFPYMRDGELINIKYRGPDKSFWQV 272
Query: 108 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
K EK+ YGLDD+ GE ++IIVEGEMDKL++E AGF N VSVPDGAP V +PS E
Sbjct: 273 KGAEKILYGLDDVAGEEEVIIVEGEMDKLALEMAGFRNVVSVPDGAPGKVKDGALPSPED 332
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
D KY+YLWNC+ L SR ++ATD D PG+AL+EELARR+G+ERCWRV WP +
Sbjct: 333 DRKYEYLWNCRAQLDTISRFVIATDSDGPGRALSEELARRLGKERCWRVTWP-----EGC 387
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWR 286
KDANE L G ++E + AE +P+ GLF F ++ EI++Y++ T+ +E G+STGWR
Sbjct: 388 KDANEALQKEGVETVRESLSTAEGFPLRGLFRFSEFAPEIESYFNMTTANELRGVSTGWR 447
Query: 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 346
++ Y V+PGELT+VTGVPNSGKSEW+DAL+CN+ GW F LCS+ENKV EHARKL+
Sbjct: 448 NIDNHYRVVPGELTVVTGVPNSGKSEWVDALMCNLAVQHGWSFALCSLENKVHEHARKLV 507
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
EK++ +P+FE Y A RM + G WL+ F LIR E+D LPS+ W+L LA+AAV
Sbjct: 508 EKYVGEPWFEGKYS-KAPRMNPDSMRTGMKWLNEHFVLIRHEDDELPSVDWILGLARAAV 566
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
LRHG+RGL+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW
Sbjct: 567 LRHGIRGLLIDPYNELDHKRPTGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNW 626
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
GE P LYDISGSAHFINKCDNGIV+HRNRD + G + V V V+KVRNKV G+IGE L
Sbjct: 627 KGECPGLYDISGSAHFINKCDNGIVVHRNRDEKLGSLREVTVNVQKVRNKVAGSIGEPKL 686
Query: 527 SYNRVTGEYMDIV 539
YN G Y+D+V
Sbjct: 687 EYNVANGRYVDVV 699
>gi|303285780|ref|XP_003062180.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456591|gb|EEH53892.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 597
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 296/558 (53%), Positives = 373/558 (66%), Gaps = 29/558 (5%)
Query: 1 MCFRAKCGWKGSTS-------ALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGN--- 50
MC RA C W G TS DN+ + + P GN
Sbjct: 40 MCHRATCEWTGGTSMDDTMSRPRRDNSDRNKGFDGAGGAGGGGLTNAAAFRIGPGGNLTD 99
Query: 51 ---ELRAYFAERLISAETLRRNRVMQKR----HGHEVV--IAFPYWRNGKLVNCKYRDFN 101
E + AER IS + RN + +R EVV + FPY R+G+LVN KYR +
Sbjct: 100 AAAEWGEFLAERGISLDVAERNGLAAQRVFSPAAGEVVDALVFPYMRDGELVNIKYRGPD 159
Query: 102 KKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161
K FWQ K EK+ +GLDD+ G+ ++IIVEGEMDKL++E+AG N VSVPDGAP V + +
Sbjct: 160 KTFWQVKGAEKIMFGLDDVVGQREMIIVEGEMDKLALEQAGIKNVVSVPDGAPGKVREGD 219
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
+P+ E+D K++YLWNC+ L SRI+LA D D PG ALAEELARR+G+ERC+RV +P+
Sbjct: 220 LPAPEEDRKFEYLWNCRAALDPVSRIVLAVDDDAPGIALAEELARRLGKERCYRVAFPEG 279
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 280
KDAN+ L G AL+ ++NAE +P+ GLF F D+ D+I +Y+ G E G
Sbjct: 280 -----CKDANDTLREHGEAALRGCIDNAEGFPLRGLFRFSDFDDDISSYFGVDEGSEMKG 334
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
+S+GW+++++ Y V+PGELT+VTGVPNSGKSEW+DAL+CN+ GW F LCSMENK
Sbjct: 335 VSSGWKSVDQHYRVVPGELTVVTGVPNSGKSEWVDALMCNLAVQHGWTFALCSMENK--- 391
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
HARKL+EK+ +P+FE Y A RM E G WL N F LIR E+D LPS+ W+L
Sbjct: 392 HARKLVEKYTGEPWFEGKYTNKA-RMRPETMRAGLHWLDNQFVLIRHEDDELPSVDWILG 450
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
LA+AAV+RHG+RGL+IDPYNELDH+RP QTETEYVSQMLT +K+FAQH+ HVWFVAHP
Sbjct: 451 LARAAVMRHGIRGLLIDPYNELDHKRPQGQTETEYVSQMLTRIKKFAQHYDVHVWFVAHP 510
Query: 461 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
RQLHNW GE P LYDISGSAHFINKCDNGIV+HRNRD + G + V V V KVRNKV G+
Sbjct: 511 RQLHNWRGEAPGLYDISGSAHFINKCDNGIVVHRNRDEKLGSLREVTVMVAKVRNKVAGS 570
Query: 521 IGEAFLSYNRVTGEYMDI 538
IG+ L YN G Y D+
Sbjct: 571 IGDPKLEYNLSNGRYEDL 588
>gi|412993299|emb|CCO16832.1| predicted protein [Bathycoccus prasinos]
Length = 934
Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/489 (57%), Positives = 350/489 (71%), Gaps = 13/489 (2%)
Query: 58 ERLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE 111
ER IS E RN V + H + FPY R+G++VN KYR NK FWQ K E
Sbjct: 436 ERGISLEVAERNGVAVQSVFSPIEGKHVDALVFPYVRDGQIVNAKYRGPNKSFWQVKGAE 495
Query: 112 KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
KV YGLDD +IIIVEGE DKL+ EEAG+ N VSVPDGAP V + +VP+ E D KY
Sbjct: 496 KVLYGLDDCIDCEEIIIVEGEFDKLAFEEAGYTNVVSVPDGAPGKVKEGDVPNPEDDKKY 555
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
+YLWNC+ L R ++ATD D PG+ALAEELARR+G+ERC+ V WP + KDAN
Sbjct: 556 EYLWNCRAQLDTVKRFVIATDSDGPGKALAEELARRLGKERCFTVNWP-----EGCKDAN 610
Query: 232 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNE 290
E L G +++ + +AE +P+ GLF F D+ +I+ Y++ +G E G+STGWR++++
Sbjct: 611 ETLQSGGVELIRDSISSAEGFPLRGLFKFADFSGDIEQYFNMDAGSELRGVSTGWRSVDK 670
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
Y V+PGELT+VTGVPNSGKSEW+DAL+ N+ GW F LCS+ENKV EHARKL+EK++
Sbjct: 671 HYRVVPGELTVVTGVPNSGKSEWVDALMSNLAVQHGWTFALCSLENKVHEHARKLVEKYV 730
Query: 351 KKPFFEAN-YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409
+P+F+ Y A+RM + ++G WL++ F LIR E+D LPS+ W+L LA+AAVLRH
Sbjct: 731 GEPWFDTTTYAKGAQRMNPQTMKRGMRWLNDHFVLIRHEDDELPSVDWILGLARAAVLRH 790
Query: 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 469
G+RGL+IDPYNELDH+RP QTETEYVSQMLT +KRFAQH+ HVWFVAHPRQLHNW GE
Sbjct: 791 GIRGLLIDPYNELDHKRPTGQTETEYVSQMLTRIKRFAQHYDVHVWFVAHPRQLHNWKGE 850
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
P LYDISGSAHFINKCDNGIVIHRNRD + G + V V + KVRNKV G+IG+ L YN
Sbjct: 851 MPGLYDISGSAHFINKCDNGIVIHRNRDEKMGSLREVTVNLAKVRNKVAGSIGDPKLEYN 910
Query: 530 RVTGEYMDI 538
G Y D+
Sbjct: 911 VRNGRYEDL 919
>gi|297740895|emb|CBI31077.3| unnamed protein product [Vitis vinifera]
Length = 460
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 206/293 (70%), Positives = 241/293 (82%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
+C + KCGW+G+ A V+++ S L + +K+K REITE SL L+PL +EL AYF ER+
Sbjct: 162 VCHQGKCGWRGNIRAFVNDSSSYGRLNQITKIKPKREITEKSLGLKPLCSELVAYFGERM 221
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RN VMQK +G + +IAF Y RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI
Sbjct: 222 ISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDI 281
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
+ SDIIIVEGE+DKLSMEEAGF NCVSVPDGAP SVS K SEE+D KYQYLWNCK Y
Sbjct: 282 KEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVFESEEKDIKYQYLWNCKEY 341
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
L++ASRIILATDGD PG ALAEELARR+GRERCW+V+WPKKN+V+HFKDANEVLMYLGP
Sbjct: 342 LEKASRIILATDGDAPGLALAEELARRLGRERCWQVKWPKKNEVEHFKDANEVLMYLGPD 401
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN 293
LK+V+ENAE+YPI GLFNF YF+EIDAYYH T G E G+STGWR LN LYN
Sbjct: 402 VLKKVIENAEVYPIQGLFNFSHYFNEIDAYYHHTLGFELGVSTGWRGLNGLYN 454
>gi|359483742|ref|XP_002268125.2| PREDICTED: uncharacterized protein LOC100247384 [Vitis vinifera]
Length = 519
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/287 (70%), Positives = 236/287 (82%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
+C + KCGW+G+ A V+++ S L + +K+K REITE SL L+PL +EL AYF ER+
Sbjct: 162 VCHQGKCGWRGNIRAFVNDSSSYGRLNQITKIKPKREITEKSLGLKPLCSELVAYFGERM 221
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RN VMQK +G + +IAF Y RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI
Sbjct: 222 ISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDI 281
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
+ SDIIIVEGE+DKLSMEEAGF NCVSVPDGAP SVS K SEE+D KYQYLWNCK Y
Sbjct: 282 KEASDIIIVEGEIDKLSMEEAGFYNCVSVPDGAPPSVSTKVFESEEKDIKYQYLWNCKEY 341
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
L++ASRIILATDGD PG ALAEELARR+GRERCW+V+WPKKN+V+HFKDANEVLMYLGP
Sbjct: 342 LEKASRIILATDGDAPGLALAEELARRLGRERCWQVKWPKKNEVEHFKDANEVLMYLGPD 401
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
LK+V+ENAE+YPI GLFNF YF+EIDAYYH T G E G+STGWR
Sbjct: 402 VLKKVIENAEVYPIQGLFNFSHYFNEIDAYYHHTLGFELGVSTGWRG 448
>gi|307106874|gb|EFN55118.1| hypothetical protein CHLNCDRAFT_31176, partial [Chlorella
variabilis]
Length = 596
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/310 (61%), Positives = 230/310 (74%)
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
KDANEVLM G L+ + NAE +PI GL F +Y+D+I YY D G STGW A
Sbjct: 287 KDANEVLMRDGAAMLRAFLLNAEPFPIRGLLRFHEYYDDIMKYYRLEHKDGQGRSTGWPA 346
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
L++LY V+PGELTIVTGVPNSGKSEWID+L+ N+ E W F LCSME K +HAR+L+E
Sbjct: 347 LDQLYKVVPGELTIVTGVPNSGKSEWIDSLLANLAEQHDWCFALCSMEKKATDHARQLVE 406
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K+I KPFF+ Y RM+ E ++G W+ + F L+R E+D+LP++ WVLD+A+AAV
Sbjct: 407 KYIGKPFFDLPYARGVRRMSERELDEGLDWIDDRFHLVRYEDDALPAVDWVLDVARAAVY 466
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
R+G+RGLVIDPYNELDHQRP S ETEYVSQMLT VKRFAQ HVWFVAHPRQL +W
Sbjct: 467 RYGIRGLVIDPYNELDHQRPASMNETEYVSQMLTKVKRFAQTTGVHVWFVAHPRQLRDWK 526
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
G+ PNLYDISGSAHFINK DNGIV+HR+RDPE+ +V + VRKVRNK GTIG+ L
Sbjct: 527 GQAPNLYDISGSAHFINKADNGIVVHRDRDPESTVQHKVNILVRKVRNKAAGTIGDCVLE 586
Query: 528 YNRVTGEYMD 537
Y RV G Y+D
Sbjct: 587 YERVNGRYID 596
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 154/227 (67%), Gaps = 15/227 (6%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFRAKCGW G N R +S K R+ T +S L E+ +FA R I
Sbjct: 4 CFRAKCGWTGRV-----NTRQGTS-------KAYRQYTNESGFDAELSPEVVNFFAGRGI 51
Query: 62 SAETLRRNRVMQKRHGH-EVVIAFPYWRNGKLVNCKYRDFN-KKFWQEKDTEKVFYGLDD 119
+A TL RNRV Q+ IAFPY+R+ +LVN KYR KKFWQ + EKV +GLDD
Sbjct: 52 TAATLVRNRVAQETLADGSTAIAFPYYRDSQLVNIKYRSVGEKKFWQVRGAEKVLFGLDD 111
Query: 120 IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKM 179
+ G+SDI++VEGEMDKL++EEAGF N VSVPDGAP+ V + VP +QDTK+ YLWNC+
Sbjct: 112 VVGQSDIVVVEGEMDKLALEEAGFTNVVSVPDGAPARVKEGEVPPADQDTKFSYLWNCRA 171
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
+L QA+++++ATD D PG ALAEELARR+GRERCWRVRWP N DH
Sbjct: 172 WLDQATKVVIATDNDAPGDALAEELARRLGRERCWRVRWP-LNKEDH 217
>gi|386393853|ref|ZP_10078634.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
gi|385734731|gb|EIG54929.1| hypothetical protein DesU5LDRAFT_3296 [Desulfovibrio sp. U5L]
Length = 568
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 221/544 (40%), Positives = 305/544 (56%), Gaps = 45/544 (8%)
Query: 7 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETL 66
CGW GS A + ++ K IR DSL L L + YF R ISAE L
Sbjct: 52 CGWTGSLKAGAEKAEARPK-------KPIRP-AWDSLRLT-LPANVTEYFQGRGISAEAL 102
Query: 67 RRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
N+V M + I FPY + G++VN KYRD +K F Q KD EK Y D I
Sbjct: 103 AANQVGYGPVWMPGPNAEVTCIQFPYLKGGEVVNVKYRDGHKNFRQAKDAEKCLYRFDAI 162
Query: 121 E----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
E + +I+ EGEMD LS+ G+ SVPDGAPS +K + K+ +L +
Sbjct: 163 EQRAGADRALIVTEGEMDALSLVTLGYQAVTSVPDGAPSPGTKN------YEKKFSFLES 216
Query: 177 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY 236
+ L + R+IL D D PGQ L ELARR+G E+CWRV +P+ KD NEVL
Sbjct: 217 AEGLLAKYGRVILCVDNDAPGQILERELARRIGFEKCWRVAYPEGT-----KDINEVLAK 271
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 296
LGP A ++V+E A PI GL+ D +++ Y G G+STGW ++E Y V P
Sbjct: 272 LGPEAARQVIEEARPMPIAGLYTASDIKGDVELLY--AEGFRRGLSTGWATVDEHYTVRP 329
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFF 355
GE+TI+TG+P SGKS W+DAL N+ + GW F CS EN V+ HA ++EK + K F
Sbjct: 330 GEMTIITGIPGSGKSNWLDALAVNLFKLHGWSFCFCSPENWPVQRHAAAIMEKIVGKSFA 389
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
+ G ERM +E + + F+ I ++ + ++ +L +AA+ RHGV+G+V
Sbjct: 390 PSR--GLVERMRADEMQYALGQMDGAFNFIMLGDEDM-ALDTILGKVRAAIFRHGVKGVV 446
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH--NWVGE--PP 471
+DP+NE +H RP +ETEY+S+ L+ V+RFA+ + HVW VAHP +L GE P
Sbjct: 447 LDPWNEFEHNRPTGLSETEYISKALSKVRRFARINDVHVWIVAHPTKLQKDKESGEYPVP 506
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531
LYDISGSAH+ NK DNGI ++R+ + D + V K+R + VG G+A L+Y R
Sbjct: 507 TLYDISGSAHWYNKADNGITVYRHME-----ADLTDIYVGKIRFREVGQRGKATLAYCRE 561
Query: 532 TGEY 535
+G Y
Sbjct: 562 SGTY 565
>gi|77163600|ref|YP_342125.1| TOPRIM domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|254435901|ref|ZP_05049408.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
gi|76881914|gb|ABA56595.1| toprim domain-containing protein [Nitrosococcus oceani ATCC 19707]
gi|207089012|gb|EDZ66284.1| hypothetical protein NOC27_2964 [Nitrosococcus oceani AFC27]
Length = 601
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 222/540 (41%), Positives = 321/540 (59%), Gaps = 41/540 (7%)
Query: 7 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETL 66
C W+G S R QS+ + + R+ S P +++ +FA+R I+ L
Sbjct: 53 CSWRGGLS-----QREQSNRTLYWRRPDYRQPAPFSPGALP--EDIQRWFAKRGITPAVL 105
Query: 67 RRNRVMQKRHGHEVV------IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
RN + K+ + IAFPY+R L+N KYRD K F E E++ YGL+D+
Sbjct: 106 ERNHIATKKVYMPQLERWVSAIAFPYYRGETLINAKYRDGRKHFRLEAGAERILYGLNDL 165
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
E + +IVEGEMDKL++E AGF N VSVPDGAP +K + K+++L +
Sbjct: 166 EQTT--LIVEGEMDKLALEVAGFRNVVSVPDGAPPPQAK------DYARKFEFLQADEEA 217
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
LK ++A D D PGQ LAEEL+RR GRE+C RV WP + KDANEVL+ GP
Sbjct: 218 LKTVKTWVIAVDNDAPGQYLAEELSRRFGREKCKRVLWP-----EACKDANEVLLKRGPE 272
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELT 300
L + ++NA+ YP+ G+ ++ID Y T G + G+STGW +++ Y V PGELT
Sbjct: 273 VLTDCIKNAQPYPLAGVLTVSHLSEDIDFLY--THGLKRGMSTGWPSVDICYTVKPGELT 330
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANY 359
+VTGVPNSGKS W+D L N+ + GW+F + S EN+ V H +++EK KPF +
Sbjct: 331 VVTGVPNSGKSNWLDCLALNLAQQ-GWRFGVFSPENQPVGHHMARMIEKWAGKPFNK--- 386
Query: 360 GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPY 419
GS R++ QGK W+ F I E+D +++ VLD A+A VLR+G++GL++DP+
Sbjct: 387 -GSIARLSRSTLAQGKDWVHEHFYWILPEDDQDWTVEHVLDRARALVLRYGIKGLLLDPW 445
Query: 420 NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP---PNLYDI 476
NE +H R + TETEY+S +L V++FA+++ HVW VAHP +L + P LYDI
Sbjct: 446 NEFEHLRAPNVTETEYISLVLKRVRQFARYYQVHVWIVAHPAKLFRGKNDQYPVPTLYDI 505
Query: 477 SGSAHFINKCDNGIVIHRNR-DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
SGSA++ NK DNG+VI R+ DP+ D V++ ++K+R + VG +G L ++ VT Y
Sbjct: 506 SGSANWRNKADNGLVIWRDLGDPKK---DLVEIHIQKIRFREVGRLGAVRLRFDPVTAVY 562
>gi|359492349|ref|XP_003634401.1| PREDICTED: uncharacterized protein LOC100264270 [Vitis vinifera]
Length = 302
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/201 (84%), Positives = 188/201 (93%)
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
VREHARKLLEKHIKKPFF+A YG S ERM++EEFE GK WLS TF LIRCENDSLP+IKW
Sbjct: 96 VREHARKLLEKHIKKPFFDAGYGESIERMSIEEFELGKKWLSETFYLIRCENDSLPNIKW 155
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
VLDLAKAAVLRHGVRGLVIDPYNELDHQRP +QTETEYVSQMLT++KRFAQHH+CHVWFV
Sbjct: 156 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPANQTETEYVSQMLTIIKRFAQHHSCHVWFV 215
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
AHPRQLH+W G PPN+YDISGSAHFINKCDNGIVIHRNR+P+AGP+D+VQVCVRKVRNKV
Sbjct: 216 AHPRQLHHWDGGPPNMYDISGSAHFINKCDNGIVIHRNRNPDAGPVDQVQVCVRKVRNKV 275
Query: 518 VGTIGEAFLSYNRVTGEYMDI 538
+GT G+AFLSY+R+TG Y D+
Sbjct: 276 IGTTGDAFLSYDRITGVYTDV 296
>gi|359492351|ref|XP_002284693.2| PREDICTED: uncharacterized protein LOC100247126 [Vitis vinifera]
Length = 928
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 167/213 (78%), Positives = 187/213 (87%)
Query: 81 VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
+IAF Y RNG V+CKYRD NK FWQE+DTEK+FYG+DDI+ SDIIIVEGE+DKLSMEE
Sbjct: 32 IIAFTYRRNGVFVSCKYRDVNKNFWQEEDTEKIFYGVDDIKAASDIIIVEGEIDKLSMEE 91
Query: 141 AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 200
AGF NCVSVP+GAP+SVS K S+E+DTKYQYLWNCK YL++ASRIILATDGD PG AL
Sbjct: 92 AGFYNCVSVPNGAPASVSTKVFKSDEEDTKYQYLWNCKEYLEKASRIILATDGDSPGLAL 151
Query: 201 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 260
AEELARR+GRERCWRV+WPKKN+VDHFKDANEVLMYLGP ALKEV+ENAELYPI GLFNF
Sbjct: 152 AEELARRLGRERCWRVKWPKKNEVDHFKDANEVLMYLGPDALKEVIENAELYPIQGLFNF 211
Query: 261 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN 293
YFDEIDAYYH+ G E G++TGWR LN LYN
Sbjct: 212 SHYFDEIDAYYHQALGFELGVATGWRGLNGLYN 244
>gi|115469466|ref|NP_001058332.1| Os06g0671700 [Oryza sativa Japonica Group]
gi|113596372|dbj|BAF20246.1| Os06g0671700, partial [Oryza sativa Japonica Group]
Length = 224
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 164/200 (82%), Positives = 184/200 (92%)
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
VREHARKLLEK IKKPFF+A YGGSAERM+++EFE+GK WL+ TF LIRCE+D LPS+ W
Sbjct: 1 VREHARKLLEKRIKKPFFDARYGGSAERMSLDEFEEGKQWLNETFHLIRCEDDCLPSVNW 60
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
VL+LAKAAVLR+GVRGLVIDPYNELDHQRP +QTETEYVSQMLT +KRFAQHH+CHVWFV
Sbjct: 61 VLELAKAAVLRYGVRGLVIDPYNELDHQRPSNQTETEYVSQMLTKIKRFAQHHSCHVWFV 120
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
AHPRQLHNW G PPN+YDISGSAHFINKCDNGIVIHRNRDP +GP+D VQVCVRKVRNKV
Sbjct: 121 AHPRQLHNWNGGPPNMYDISGSAHFINKCDNGIVIHRNRDPNSGPLDVVQVCVRKVRNKV 180
Query: 518 VGTIGEAFLSYNRVTGEYMD 537
+G IG+AFLSY RV+GE+ D
Sbjct: 181 IGQIGDAFLSYERVSGEFRD 200
>gi|240254185|ref|NP_174354.4| nucleic acid binding protein [Arabidopsis thaliana]
gi|332193136|gb|AEE31257.1| nucleic acid binding protein [Arabidopsis thaliana]
Length = 337
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 155/251 (61%), Positives = 191/251 (76%), Gaps = 6/251 (2%)
Query: 4 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISA 63
R KCG KG VD + K K R+IT +S++LEPL +E++ +FA R IS
Sbjct: 91 RRKCGLKGVLQ--VDGKL----VSKDPIGKVERKITVESIKLEPLCDEIQDFFAARAISG 144
Query: 64 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
+TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T K+ YGLDDIE
Sbjct: 145 KTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEET 204
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE +DT ++Y+WNC YLK+
Sbjct: 205 SEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSESKDTAFKYIWNCNDYLKK 264
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243
ASRI++ATDGD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDANEVLM GP LK
Sbjct: 265 ASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLK 324
Query: 244 EVVENAELYPI 254
E + NAE YP+
Sbjct: 325 EAILNAEPYPL 335
>gi|359483975|ref|XP_002270298.2| PREDICTED: uncharacterized protein LOC100263216 [Vitis vinifera]
Length = 380
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 158/253 (62%), Positives = 187/253 (73%), Gaps = 10/253 (3%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR+ CGW G S +S++ T +T DSL LEPLG++L AYF ER+I
Sbjct: 131 CFRSTCGWAGRVFP--------ESSAAYSEV-TNNWMTVDSLGLEPLGDKLIAYFGERMI 181
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN VMQ G++ VIA Y +NG+LV CKYR K+FWQEK TEK+ YGLDDI+
Sbjct: 182 SEKTLWRNAVMQ-LSGNQSVIALTYRQNGRLVGCKYRSMGKRFWQEKGTEKILYGLDDIQ 240
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
++IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K +PS ++DT Y YLWNCK YL
Sbjct: 241 EANEIIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKVSAKELPSLDKDTAYHYLWNCKEYL 300
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+ASRIILATDGD PGQALAEELARR+G+ERCWRV WPKK D FKDANEVL LG A
Sbjct: 301 DKASRIILATDGDSPGQALAEELARRLGKERCWRVSWPKKEDSSCFKDANEVLKNLGADA 360
Query: 242 LKEVVENAELYPI 254
L+EV+ENAELY +
Sbjct: 361 LREVIENAELYEV 373
>gi|296089225|emb|CBI38997.3| unnamed protein product [Vitis vinifera]
Length = 276
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/259 (61%), Positives = 187/259 (72%), Gaps = 15/259 (5%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR+ CGW G S +S++ T +T DSL LEPLG++L AYF ER+I
Sbjct: 20 CFRSTCGWAGRVFP--------ESSAAYSEV-TNNWMTVDSLGLEPLGDKLIAYFGERMI 70
Query: 62 SAETLRRNRVMQ---KRHGHEV---VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFY 115
S +TL RN VMQ + G + VIA Y +NG+LV CKYR K+FWQEK TEK+ Y
Sbjct: 71 SEKTLWRNAVMQLSGNQSGQLIIMSVIALTYRQNGRLVGCKYRSMGKRFWQEKGTEKILY 130
Query: 116 GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
GLDDI+ ++IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K +PS ++DT Y YLW
Sbjct: 131 GLDDIQEANEIIIVEGEVDKLSVEEAGFCNCVSVPGGAPQKVSAKELPSLDKDTAYHYLW 190
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 235
NCK YL +ASRIILATDGD PGQALAEELARR+G+ERCWRV WPKK D FKDANEVL
Sbjct: 191 NCKEYLDKASRIILATDGDSPGQALAEELARRLGKERCWRVSWPKKEDSSCFKDANEVLK 250
Query: 236 YLGPGALKEVVENAELYPI 254
LG AL+EV+ENAELY +
Sbjct: 251 NLGADALREVIENAELYEV 269
>gi|356533161|ref|XP_003535136.1| PREDICTED: uncharacterized protein LOC100814805 [Glycine max]
Length = 375
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/251 (61%), Positives = 186/251 (74%), Gaps = 5/251 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFRA+CGW G SA D+ S + + R++ E+SL LEPLG E+ AYF ERLI
Sbjct: 126 CFRAQCGWAGQVSA--DDKELYSGV--CTNANLYRQLAEESLGLEPLGPEVVAYFGERLI 181
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN V Q + ++ VIAF Y +NG LV CKYR K+FWQ K +K+ YG+DDI
Sbjct: 182 SEKTLSRNAVRQLSN-NKTVIAFTYKQNGLLVGCKYRTMEKRFWQGKGADKILYGIDDIS 240
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
S+IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K++P E+DT ++YLWNCK YL
Sbjct: 241 QASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPEKVSSKDLPPIEKDTAFRYLWNCKEYL 300
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+A RIILATD DPPGQALAEELARR+GRERCWRV WPKK++ FKDANEVL Y+G A
Sbjct: 301 DKAVRIILATDNDPPGQALAEELARRLGRERCWRVLWPKKDEFSSFKDANEVLKYMGADA 360
Query: 242 LKEVVENAELY 252
LK++VENAE Y
Sbjct: 361 LKKLVENAEPY 371
>gi|255564297|ref|XP_002523145.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223537552|gb|EEF39176.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 306
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 153/251 (60%), Positives = 178/251 (70%), Gaps = 3/251 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
C+R CGW G A D+ + + K+ T R+ T + + LEPLG +L AYF++R I
Sbjct: 50 CYRTCCGWAGQ--AFADDRATNEGMNIMLKVNTSRQTTSEGIALEPLGEKLIAYFSDRGI 107
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S ETLRRN VMQ +V IAF Y +N LV CKYR KKFWQ+K TEK YGLDDI
Sbjct: 108 SKETLRRNSVMQMAADQDV-IAFTYRQNRVLVGCKYRTTEKKFWQDKGTEKWLYGLDDIN 166
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
++IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K+VP E D YQYLWNC+ YL
Sbjct: 167 ETTEIIIVEGEIDKLSVEEAGFRNCVSVPGGAPQVVSTKDVPPLENDKAYQYLWNCRDYL 226
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+ SRIILATDGD GQALAEELARR+G+ERC VRWPKK+ FKDANEVL LGP A
Sbjct: 227 DKVSRIILATDGDVAGQALAEELARRLGKERCCIVRWPKKDHSRCFKDANEVLKCLGPIA 286
Query: 242 LKEVVENAELY 252
LKEV+E AELY
Sbjct: 287 LKEVIETAELY 297
>gi|388507530|gb|AFK41831.1| unknown [Lotus japonicus]
Length = 384
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 153/252 (60%), Positives = 177/252 (70%), Gaps = 5/252 (1%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR +CGW G A + + K + K + TE SL LEPLG +L AYF ERLI
Sbjct: 133 CFRPECGWAGRVFA----DDMELDGKVSANAKPYGQTTEKSLGLEPLGPQLLAYFKERLI 188
Query: 62 SAETLRRNRVMQKRHGHEV-VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
S +TL RN V Q + VIAF Y +NG LV CKYR K+FWQ K T+KV YG+DDI
Sbjct: 189 SEKTLSRNAVRQLSDSDDKKVIAFTYKQNGLLVGCKYRTVEKRFWQGKGTDKVLYGIDDI 248
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
S+IIIVEGE+DKLS+EEAGF NCVSVP GAP VS K++P E+DT YQYLWNCK Y
Sbjct: 249 SHASEIIIVEGEIDKLSLEEAGFQNCVSVPVGAPGKVSFKDLPPREKDTAYQYLWNCKEY 308
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
L + RIILATD D PGQALAEELARR+G ERCWRV WPKK++ FKDANEVL Y+G
Sbjct: 309 LDKVVRIILATDNDQPGQALAEELARRLGHERCWRVHWPKKDESSCFKDANEVLKYMGAD 368
Query: 241 ALKEVVENAELY 252
ALK +VENAE Y
Sbjct: 369 ALKRMVENAEPY 380
>gi|449435924|ref|XP_004135744.1| PREDICTED: uncharacterized protein LOC101219541 [Cucumis sativus]
Length = 329
Score = 288 bits (738), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/263 (55%), Positives = 185/263 (70%), Gaps = 15/263 (5%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNE---------- 51
CF+ +CGW G A D + + K +KM + +++SL LEPL +E
Sbjct: 53 CFQFECGWAGQIFA--DGKLAFNGFGKITKM--VGRSSKESLVLEPLCDEMFFRMVRSPQ 108
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE 111
L +YF+ R+IS ETL RN VMQ G +V IAF Y +NG+LV CKYR +K+FWQEK T
Sbjct: 109 LISYFSMRMISQETLERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTA 167
Query: 112 KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
K YG+DDI ++IIVEGEMDKLS+EEAGFLNC+SVP GAP+ VS VP E+DT Y
Sbjct: 168 KFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAY 227
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
QYLW+CK YL + SR+ILATD D PGQALAEELARR+G+ RCWRV WP K+ + FKDAN
Sbjct: 228 QYLWSCKDYLDKVSRVILATDSDVPGQALAEELARRLGKNRCWRVSWPYKDGFNRFKDAN 287
Query: 232 EVLMYLGPGALKEVVENAELYPI 254
EVL++LGP ALK+ +E+A+ Y +
Sbjct: 288 EVLVHLGPDALKKAIEDAKFYQL 310
>gi|357495669|ref|XP_003618123.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
gi|355519458|gb|AET01082.1| hypothetical protein MTR_5g099220 [Medicago truncatula]
Length = 331
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 176/251 (70%), Gaps = 15/251 (5%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CFR CGW G SA D+ + + E+SL LEPLG +L AYF ERLI
Sbjct: 92 CFRPICGWAGQVSA--DDKELDN------------KPDEESLGLEPLGPKLVAYFKERLI 137
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S +TL RN V Q + VIAF Y +NG +V CKYR K+FWQ K +KV YGLDDI
Sbjct: 138 SEKTLSRNSVRQ-LSDEKNVIAFTYKQNGLIVGCKYRTMEKRFWQGKVIDKVLYGLDDIS 196
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
++IIIVEGE+DKLS+EEAG+ NCVSVPDGAP VS K+ P E+DT YQYLWN K YL
Sbjct: 197 HATEIIIVEGEIDKLSLEEAGYQNCVSVPDGAPGKVSSKDPPPIEKDTAYQYLWNSKDYL 256
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+ RIILATD DPPGQALAEELARR+GRERCW+VRWPKK+++ FKDANEVL Y+G A
Sbjct: 257 DKVVRIILATDNDPPGQALAEELARRLGRERCWQVRWPKKDELSFFKDANEVLKYMGANA 316
Query: 242 LKEVVENAELY 252
LK +VE AE Y
Sbjct: 317 LKRIVEKAEPY 327
>gi|4587522|gb|AAD25753.1|AC007060_11 T5I8.11 [Arabidopsis thaliana]
Length = 314
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 146/251 (58%), Positives = 178/251 (70%), Gaps = 22/251 (8%)
Query: 4 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISA 63
R KCG KG VD + K K R+IT +S++LEPL +E++ +FA R IS
Sbjct: 84 RRKCGLKGVLQ--VDGKL----VSKDPIGKVERKITVESIKLEPLCDEIQDFFAARAISG 137
Query: 64 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
+TL RNRVMQKR E+VIAF YW+ G+LV+CKYR KKF QE++T K+ YGLDDIE
Sbjct: 138 KTLERNRVMQKRIDDEIVIAFTYWQRGELVSCKYRSLTKKFVQERNTRKILYGLDDIEET 197
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
S+IIIVEGE DKL+MEEAGF NCVSVPDGAP +VS K +PSE +
Sbjct: 198 SEIIIVEGEPDKLAMEEAGFFNCVSVPDGAPETVSSKEIPSE----------------SK 241
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243
ASRI++ATDGD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDANEVLM GP LK
Sbjct: 242 ASRIVIATDGDGPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPHLLK 301
Query: 244 EVVENAELYPI 254
E + NAE YP+
Sbjct: 302 EAILNAEPYPL 312
>gi|297846010|ref|XP_002890886.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336728|gb|EFH67145.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 314
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 143/251 (56%), Positives = 178/251 (70%), Gaps = 22/251 (8%)
Query: 4 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISA 63
R KCG KG VD + K K R+IT + ++L+PL +E++ +FA R IS
Sbjct: 84 RRKCGLKGVVQ--VDGKL----VSKDPMEKVERKITVEGIKLQPLCDEIQDFFAARAISV 137
Query: 64 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
+TL RNRVMQKR G E+++AF YW+ G+LV+CKYR KKF QE++T K+ YGLDDIE
Sbjct: 138 KTLERNRVMQKRIGDEIMLAFAYWQRGELVSCKYRSLTKKFSQERNTRKILYGLDDIEKA 197
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
S+IIIVEGE+DKL+MEEAGFLNCVSV DGAP +VS K +PSE +
Sbjct: 198 SEIIIVEGEIDKLAMEEAGFLNCVSVADGAPVTVSSKEIPSES----------------K 241
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243
SRI+LATDGD PGQALAEELARR+G+ERCW V+WPKK++ +HFKDANEVLM GP LK
Sbjct: 242 VSRIVLATDGDVPGQALAEELARRLGKERCWLVKWPKKSEDEHFKDANEVLMSKGPQLLK 301
Query: 244 EVVENAELYPI 254
E + NAE YP+
Sbjct: 302 EAILNAEPYPL 312
>gi|389696621|ref|ZP_10184263.1| replicative DNA helicase [Microvirga sp. WSM3557]
gi|388585427|gb|EIM25722.1| replicative DNA helicase [Microvirga sp. WSM3557]
Length = 488
Score = 274 bits (701), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 171/498 (34%), Positives = 256/498 (51%), Gaps = 41/498 (8%)
Query: 55 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 114
+ +R IS ET R + + + FP+ GK V K+R NKKFWQE ++ F
Sbjct: 9 WLEKRGISDETAVRFGICTV----DGALKFPFTEQGKEVGAKFRGANKKFWQESGGKRTF 64
Query: 115 YGLDDI------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV--PSEE 166
+ D + +G +II EGE+D L+ E GF VSVPDGAP +V + V P ++
Sbjct: 65 WNADALDDPALEQGSMPLIITEGEIDALTAIECGFPLTVSVPDGAPPAVGEPTVNNPLDD 124
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
Q K+Q+++N + LK+ R +LA D DPPG LA EL RR+G RC V +P +
Sbjct: 125 QTGKFQFMFNNRDRLKRIKRFVLAVDNDPPGIRLASELVRRLGASRCSFVTYP-----EG 179
Query: 227 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 286
KD NEVL GP + EV+ A+ YP+ GL+ DY A RT G TGW
Sbjct: 180 CKDLNEVLTQCGPEGVTEVLNGAKPYPVKGLYKLEDY---PPAEPIRTVG------TGWA 230
Query: 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR-KL 345
+++ + + PG T+VTG+P GK+ W + NI + GWK + S E H KL
Sbjct: 231 TVDKHFKLFPGAFTVVTGIPGHGKTTWTMGMSINIARNFGWKTAVFSPEMPTVPHLHNKL 290
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVLDL 401
P + +R + E +Q +L+ F + + D +++WV++
Sbjct: 291 RTIASGLPLYRV----LQDRQILRETDQ---FLNEAFVFLDADPEEGIDEDMTLEWVIER 343
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP- 460
A AV RHG++ L+IDP+NE++H +P + +Y+ + + M+KRFA+ V + HP
Sbjct: 344 AHDAVHRHGIKHLIIDPWNEVEHAKPAGEAMPDYIGRGIRMLKRFAKERQVAVTVIVHPT 403
Query: 461 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
+ + PNLYD GSAH+ NK D G+V+ RDPE + + KVR K G
Sbjct: 404 KAVAGDNPRMPNLYDCEGSAHWYNKPDLGVVV--GRDPENPESPHTVIRIAKVRFKGTGM 461
Query: 521 IGEAFLSYNRVTGEYMDI 538
G+ + Y T ++ +
Sbjct: 462 KGDVLMKYEEDTERFLQL 479
>gi|449515949|ref|XP_004165010.1| PREDICTED: uncharacterized protein LOC101227451, partial [Cucumis
sativus]
Length = 278
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 135/231 (58%), Positives = 166/231 (71%), Gaps = 5/231 (2%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CF+ +CGW G A D + + K +KM + +++SL LEPL +EL +YF+ R+I
Sbjct: 53 CFQFECGWAGQIFA--DGKLAFNGFGKITKM--VGRSSKESLVLEPLCDELISYFSMRMI 108
Query: 62 SAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
S E L RN VMQ G +V IAF Y +NG+LV CKYR +K+FWQEK T K YG+DDI
Sbjct: 109 SQEILERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDIN 167
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
++IIVEGEMDKLS+EEAGFLNC+SVP GAP+ VS VP E+DT YQYLW+CK YL
Sbjct: 168 DADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYL 227
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
+ SRIILATD D PGQALAEELARR+G+ RCWRV WP K+ + FKDANE
Sbjct: 228 DKVSRIILATDSDVPGQALAEELARRLGKNRCWRVYWPYKDGFNRFKDANE 278
>gi|189460531|ref|ZP_03009316.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
gi|189432775|gb|EDV01760.1| hypothetical protein BACCOP_01172 [Bacteroides coprocola DSM 17136]
Length = 607
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 183/495 (36%), Positives = 258/495 (52%), Gaps = 45/495 (9%)
Query: 55 YFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK 108
+F R IS +TL +V M +++G + F Y+ NG+LVN K+R +K F
Sbjct: 104 WFKGRGISEKTLTAMKVTEGLEWMPQKNGKANTVQFNYYHNGELVNTKFRTGDKCFKLCS 163
Query: 109 DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
E + YG+D+I+G + II EGEMD LS E G + VSVP+GA S++ + EE
Sbjct: 164 GAELLPYGIDNIKGTKECIITEGEMDALSFFECGRTDVVSVPNGANSNLDYLDDYLEE-- 221
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
Y I +A+D D G L EEL RR G ERC + + D K
Sbjct: 222 -----------YFDDKETIYIASDTDTKGVVLKEELIRRFGAERCRIIEYG-----DGCK 265
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE L G +L + + +A I G+F D+ +DA + G + G++ G
Sbjct: 266 DANEHLQKYGRESLLKCIADAPEIKIEGVFTLSDFEQSLDALFEH--GLQKGVTIGHDNF 323
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLLE 347
+ L + L I+TGVP+SGKSE+ID + +N GW+F S EN E HA KL+E
Sbjct: 324 DRLCSFETKRLCIITGVPSSGKSEFIDEIAERLNIRYGWRFAYFSPENAPLEYHASKLIE 383
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K K F E +T E++Q K L F I ++D + +L+ AK V
Sbjct: 384 KFTGKQF-------DKEHLTYGEYKQVKQHLETNFFFISPKSDF--RVDAILERAKFLVR 434
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NW 466
R G++ LVIDPYN L+ + + ET+Y+S++L + FAQ H V +AHP ++ N
Sbjct: 435 RKGIKVLVIDPYNRLEDESE-GKNETKYISRLLDKLTNFAQQHDVLVILMAHPTKMQKNK 493
Query: 467 VGEP--PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA 524
GEP P LYDISGSA+F NK D GIV+HRNR + V++ V+KV+ + +G G A
Sbjct: 494 DGEPEIPTLYDISGSANFYNKADFGIVVHRNRLE-----NTVEIYVKKVKFRHLGECGMA 548
Query: 525 FLSYNRVTGEYMDIV 539
YN G Y V
Sbjct: 549 LFKYNLNNGRYSPFV 563
>gi|365856514|ref|ZP_09396531.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
gi|363718050|gb|EHM01406.1| hypothetical protein HMPREF9946_02145 [Acetobacteraceae bacterium
AT-5844]
Length = 604
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 189/559 (33%), Positives = 280/559 (50%), Gaps = 46/559 (8%)
Query: 2 CFRAKCGWK-GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
C R CGW+ G+ D +RS + + + +T + E+ + E +F +R
Sbjct: 61 CHRGNCGWQDGARLPARDGSRSAPAARAAASFQTPQPHPEEQQDKTAWVYE---WFEKRG 117
Query: 61 ISAETLRRNRVMQKRH-----GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFY 115
ISAET+ H G++ I FPY+ KLVN KYR +K+ Q+K+ +
Sbjct: 118 ISAETVDAFGCYGAAHWFPAGGNQPAIVFPYFYERKLVNRKYRSLDKQLMQDKNPLPTLF 177
Query: 116 GLDDIE-----GESDIII-VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 169
+D IE E D++I VEGE D +++ EAGF V++ DGAP + ++ P+ + D
Sbjct: 178 NIDAIEVSEAAPEPDLVIWVEGEPDVMALHEAGFRQVVTLKDGAPDKIRAEDDPARQDDK 237
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
++ L L + ILA D D PG+ L EELARR+GR RCW V WP+ KD
Sbjct: 238 RFAALATHADLLGGVKKFILAGDMDEPGKILREELARRLGRHRCWLVTWPEG-----CKD 292
Query: 230 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 289
A + L G A+++ ++ A YPI G+ + R +STG A +
Sbjct: 293 AGDTLRLHGADAVRQAIDEAVAYPIEGM----QRLEPGTLLALRHGEPPPLLSTGAGATD 348
Query: 290 ELYNVLPGE--LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLL 346
+ LPGE L +VTG+PN GKS W+ + ++ +F++ S E + E + +
Sbjct: 349 RILK-LPGEGRLIVVTGIPNHGKSSWVMFVKVHLMREHRRRFLVFSPEMQPWESYVAQCA 407
Query: 347 EKHIKKPFFEANYGGSAE----RMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDL 401
KPF+ G MT EE ++ +AW L+ D PS+ W+L+
Sbjct: 408 AVRAGKPFWPMKDGQGRPLPGLSMTDEEIKEAEAWFRPRLVMLVSDAEDVAPSLDWILER 467
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
AKAAVLR G LVIDP+NE++HQR TETEYV + L ++ FA H C+VW VAHP
Sbjct: 468 AKAAVLRDGTTDLVIDPWNEVEHQR-GDMTETEYVGRSLQRLRSFANRHGCNVWIVAHPT 526
Query: 462 QLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
+L E P +YDI+G A++ NK D GI +H P ++ + K R +
Sbjct: 527 KLRPLKPGDKIERPVMYDINGGANWANKADLGIAVH-------SPDSVTEIHLLKSRYQR 579
Query: 518 VG-TIGEAFLSYNRVTGEY 535
G +A L +N+ G Y
Sbjct: 580 WGRRDSKAELEFNKQNGRY 598
>gi|116253685|ref|YP_769523.1| phage DNA primase/helicase [Rhizobium leguminosarum bv. viciae
3841]
gi|115258333|emb|CAK09435.1| putative phage DNA primase/helicase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 553
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 163/469 (34%), Positives = 239/469 (50%), Gaps = 49/469 (10%)
Query: 81 VIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI------EGESDIIIVEGEMD 134
++ FP+ G+ V KYR KKFWQ K K F+ D + EG +II EGE+D
Sbjct: 70 IVVFPFIDGGRPVGEKYRAPGKKFWQRKGGRKTFWNADCMDDPALEEGHKALIITEGEID 129
Query: 135 KLSMEEAGFLNCVSVPDGAPSSVSKKN-------VPSEEQDTKYQYLWNCKMYLKQASRI 187
L+ + GF VSVPDGAP ++ +P ++ K+++++N + +K+ R
Sbjct: 130 GLTAIDCGFHTTVSVPDGAPPVRDGEDPDQLDDAIPDDDSRGKFEFVYNNRHRIKRIKRF 189
Query: 188 ILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE 247
ILA D DPPG+ LA EL RR+G RC + +P+ KD N+V M GP A+ V+
Sbjct: 190 ILAVDNDPPGRRLAAELVRRLGAARCSFLTYPEG-----CKDLNDVKMRHGPDAVVRVIT 244
Query: 248 NAELYPIMGLFNFRDY--FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 305
A+ YP+ G++ DY DE Y STGW L+E V GEL +VTG+
Sbjct: 245 EAKPYPVKGIYLLSDYPELDEPATY-----------STGWPDLDEYLRVWLGELMVVTGI 293
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
P GKS W L N+ GW+ + S E R L A G ++
Sbjct: 294 PGHGKSTWTMNLCVNLARKHGWRVGVASFEIPTVPALRFKLRL--------AASGLGTKQ 345
Query: 366 MTVEEFEQGKAWLSNTFSLIRC----ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
T ++ + ++ F I E D +++W+LD A AV+RH ++ LVIDP+NE
Sbjct: 346 WTRDDVAEADVFIQQHFVFIDADPTGEADDDMTLEWLLDRAADAVMRHSIKVLVIDPWNE 405
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP--PNLYDISGS 479
++H RP ++ET+Y+++ L +++FA + VAHP + GE P LYDI GS
Sbjct: 406 VEHYRPKGESETQYINRALRQIRKFALRYGVLAIVVAHPTKELGKGGESRTPTLYDIEGS 465
Query: 480 AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 528
A + NK D+G+VI DP+ + V V+K R G G+ L Y
Sbjct: 466 AAWYNKPDHGVVIDVP-DPD---LHETVVWVKKARFSWSGRKGDVTLEY 510
>gi|147865110|emb|CAN79816.1| hypothetical protein VITISV_006608 [Vitis vinifera]
Length = 461
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 173/293 (59%), Gaps = 56/293 (19%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL 60
+C + KCGW+G+ IR L AYF ER+
Sbjct: 131 VCHQGKCGWRGN----------------------IR---------------LVAYFGERM 153
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI 120
IS +TL RN VMQK +G + +IAF Y RNG LV+CKYRD NK FWQEKDTEK+FYG+DDI
Sbjct: 154 ISEKTLARNSVMQKTYGDQFIIAFTYRRNGVLVSCKYRDVNKNFWQEKDTEKIFYGVDDI 213
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
+ SDIIIVEGE+DKLSMEEA F NCVSVPD AP SVS K SEE+ +K W+ K
Sbjct: 214 KEASDIIIVEGEIDKLSMEEAXFYNCVSVPDXAPPSVSTKVFESEEKMSKTTSFWSQK-- 271
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
+K+ R L G+ E+ ++ + EVLMYLGP
Sbjct: 272 IKKEVRASLCPLQPDAGEEEKEKKKKKKKEKE-----------------KKEVLMYLGPD 314
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN 293
LK+V+ENAE+YPI GLFNF YF+EIDAYYH T G E G+STGWR LN LYN
Sbjct: 315 VLKKVIENAEVYPIQGLFNFSHYFNEIDAYYHHTLGFELGVSTGWRGLNGLYN 367
>gi|354603971|ref|ZP_09021964.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
gi|353348403|gb|EHB92675.1| hypothetical protein HMPREF9450_00879 [Alistipes indistinctus YIT
12060]
Length = 589
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 254/493 (51%), Gaps = 47/493 (9%)
Query: 55 YFAERLISAETLRRNRVMQKR-----HGHEV-VIAFPYWRNGKLVNCKYRDFNKKFWQEK 108
+F R+IS TLR R+ + +G + VI FPY+ +LVN KYR K F K
Sbjct: 92 WFEGRMISQATLREMRIYSDKEWMPQYGRDTKVICFPYFVGDRLVNIKYRGPQKSFRMVK 151
Query: 109 DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
E +FY D I ++I+ EGEMD LS EAG+ N VSVP+GA +
Sbjct: 152 GAELIFYNFDCIAASKELIVCEGEMDALSFIEAGYKNVVSVPNGAGA------------- 198
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
T Y N L R +A D D G L EL RR+G E+C V + + K
Sbjct: 199 TDLTYFDNYVDNLGHIERFYIAADFDEAGLKLRNELVRRLGSEKCLIVTYKGR------K 252
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE+L+ G A++EV+E A+ PI G N + +D+I A Y G G TG +
Sbjct: 253 DANELLIAEGGLAVREVIEGAQEIPIQGYINLSERYDDIFAMYRH--GLPEGNRTGIAEI 310
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLE 347
+E+ +L + TG+P+ GKSE +D + + WK + S EN ++ H K+ E
Sbjct: 311 DEVIRWEVSQLAVWTGIPSHGKSEMLDMVTVLLAVCHDWKTLFFSPENYPIQSHYAKIAE 370
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K I K F +++ M+ EEF++ ++ + F + + P+++ +L AK V
Sbjct: 371 KLIGKSFKQSD-------MSREEFDRVFDYIGDHFFWLDPYEE--PTLENILGRAKQFVQ 421
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP---RQLH 464
R G++ LVIDP+N L+H+R ++T +EYV + L + RFA+ + V VAHP +L
Sbjct: 422 RRGIKQLVIDPFNSLEHKRDRNETGSEYVGRFLDELSRFAKRYGVLVHLVAHPTKLEKLS 481
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVG-TIGE 523
+ + PP LYDISGSA+F NK D G+ ++R+ R ++ KVR K G + E
Sbjct: 482 SGIYPPPTLYDISGSANFYNKADYGLTVYRDFVNH-----RTKLIPTKVRFKNFGHPVSE 536
Query: 524 A-FLSYNRVTGEY 535
L YN G Y
Sbjct: 537 GVLLQYNPRNGRY 549
>gi|424664314|ref|ZP_18101350.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
gi|404575896|gb|EKA80637.1| hypothetical protein HMPREF1205_00189 [Bacteroides fragilis HMW
616]
Length = 622
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/495 (33%), Positives = 259/495 (52%), Gaps = 53/495 (10%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR-DFNKKFWQEKDT 110
+ A+ AE+L +++ M + E + F Y G+LVN K+R +K F
Sbjct: 127 ISAHAAEQLHITSSVQ---YMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKHFKMLTGA 183
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQD 168
E + Y +D I+G + II EGE+D + AG + +SVP GA ++ + V S +D
Sbjct: 184 ELIPYNIDGIKGTPECIITEGELDAAAFVTAGRTDVISVPGGANRNLKWMDRFVDSHFED 243
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+ Y+ A D DP G+ L +EL RR+GRERC V + + K
Sbjct: 244 KRVIYI---------------AGDADPKGEELKQELLRRLGRERCRVVSYG-----EGCK 283
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE+L+ GP AL + + +A P+ G++ D +E+ + +G G TG + L
Sbjct: 284 DANELLVKAGPEALSQALADAPEMPLEGVYTAADVDEEMRILFE--NGLSRGAETGLKNL 341
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 347
++L G L ++TG P GKSE+ D L+ + + W+ S EN+ + H KL E
Sbjct: 342 DDLCTFETGRLCVITGHPGDGKSEFTDELVLRLCLNHQWRTAYFSPENQPLPYHLAKLTE 401
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K + F + MT +E+ + +L+ S I + D +++ +L+ A+ V
Sbjct: 402 KLTGQRFRKG-------LMTEMLYEKAQRYLAENISSILPKEDF--TVESILERARQLVR 452
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
R G+R LV+DP+N L+H+ P QTET+Y+S L ++ FAQ H C V VAHPR++
Sbjct: 453 RRGIRILVLDPFNRLEHRIPGGQTETQYISAFLDLLANFAQRHQCLVILVAHPRKMQT-- 510
Query: 468 GEP-------PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
+P P L DI+GSA F+NKCD G+V+ R+R +AG + RV V+KV+ + +G
Sbjct: 511 -DPLTKRLPVPTLQDINGSAAFVNKCDFGLVVERDR--QAG-VTRVH--VKKVKFRHLGN 564
Query: 521 IGEAFLSYNRVTGEY 535
IGE +N V G Y
Sbjct: 565 IGECSFVFNTVNGRY 579
>gi|423278354|ref|ZP_17257268.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
gi|404586364|gb|EKA90937.1| hypothetical protein HMPREF1203_01485 [Bacteroides fragilis HMW
610]
Length = 622
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 168/495 (33%), Positives = 259/495 (52%), Gaps = 53/495 (10%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR-DFNKKFWQEKDT 110
+ A+ AE+L +++ M + E + F Y G+LVN K+R +K F
Sbjct: 127 ISAHAAEQLHITSSVQ---YMPQSGLEEPCLCFNYLEEGRLVNIKFRATLHKHFKMLTGA 183
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQD 168
E + Y +D I+G + II EGE+D + AG + +SVP GA ++ + V S +D
Sbjct: 184 ELIPYNIDGIKGTPECIITEGELDAAAFVTAGRTDVISVPGGANRNLKWMDRFVDSHFED 243
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+ Y+ A D DP G+ L +EL RR+GRERC V + + K
Sbjct: 244 KRVIYI---------------AGDADPKGEELKQELLRRLGRERCRVVSYG-----EGCK 283
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE+L+ GP AL + + +A P+ G++ D +E+ + +G G TG + L
Sbjct: 284 DANELLVKAGPEALSQALADAPEMPLEGVYTAVDVDEEMRILFE--NGLSRGAETGLKNL 341
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 347
++L G L ++TG P GKSE+ D L+ + + W+ S EN+ + H KL E
Sbjct: 342 DDLCTFETGRLCVITGHPGDGKSEFTDELVLRLCLNHQWRTAYFSPENQPLPYHLAKLTE 401
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K + F + MT +E+ + +L+ S I + D +++ +L+ A+ V
Sbjct: 402 KLTGQRFRKG-------LMTEMLYEKAQRYLAENISSILPKEDF--TVESILERARQLVR 452
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
R G+R LV+DP+N L+H+ P QTET+Y+S L ++ FAQ H C V VAHPR++
Sbjct: 453 RRGIRILVLDPFNRLEHRIPGGQTETQYISAFLDLLANFAQRHQCLVILVAHPRKMQT-- 510
Query: 468 GEP-------PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
+P P L DI+GSA F+NKCD G+VI R+R +AG + RV V+KV+ + +G
Sbjct: 511 -DPLTKRLPVPTLQDINGSAAFVNKCDFGLVIERDR--QAG-VTRVH--VKKVKFRHLGN 564
Query: 521 IGEAFLSYNRVTGEY 535
IGE +N V G Y
Sbjct: 565 IGECSFVFNPVNGRY 579
>gi|260642353|ref|ZP_05415529.2| DNA primase/helicase [Bacteroides finegoldii DSM 17565]
gi|260622579|gb|EEX45450.1| hypothetical protein BACFIN_06917 [Bacteroides finegoldii DSM
17565]
Length = 613
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 165/474 (34%), Positives = 237/474 (50%), Gaps = 39/474 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIVE 130
M + E + F Y+ +G+LVN K+R + K F + E + Y +D + G++ II E
Sbjct: 141 MPQSGQKERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHE 200
Query: 131 GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
GE+D S AGF + +SVP GA S++S + E + + + +I+A
Sbjct: 201 GELDAASSLAAGFKSVISVPAGANSNLSWLDRFME-------------THFEDLTEVIIA 247
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D G L +EL R+G ERC V + KDANE L G +L+ +E A
Sbjct: 248 VDTDSAGLQLRDELINRLGAERCRVVAYGPG-----CKDANEHLCKYGVASLRVAIEQAA 302
Query: 251 LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK 310
P+ G+F D ++ A + G G TGW ++++ G L I+TGVP +GK
Sbjct: 303 EVPLEGVFTATDLHSDLLALFENGFGP--GAETGWEEMDKICTYERGRLIILTGVPGAGK 360
Query: 311 SEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
SEW+D L+ + WK S EN + H RKL+EK F + M E
Sbjct: 361 SEWLDELVLRLCLRHQWKIAFFSPENTPIVYHIRKLVEKLTGHRFQKGCGISEGLLMRSE 420
Query: 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
EF L++ S I + ++ P + VL A VLR G R LVIDP N LDH
Sbjct: 421 EF------LTDNVSHISLKGNATP--ERVLAKAHELVLRRGCRILVIDPLNRLDHTPQPG 472
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEPP---NLYDISGSAHFINK 485
QTET+Y+S L M+ FA H C V VAHPR+++ N V +YDI+GSA F NK
Sbjct: 473 QTETQYLSNFLNMITEFAVQHNCLVVLVAHPRKMNRNPVTNTTPRVEMYDINGSADFFNK 532
Query: 486 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 539
D GIV+ R++ + +V V KV+ K +G G +Y+ V+G Y+ V
Sbjct: 533 ADYGIVVERDKG-----VGVTRVYVDKVKFKHLGMGGMVTFAYDPVSGRYLPCV 581
>gi|423299669|ref|ZP_17277694.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
gi|408473478|gb|EKJ92000.1| hypothetical protein HMPREF1057_00835 [Bacteroides finegoldii
CL09T03C10]
Length = 600
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 164/474 (34%), Positives = 241/474 (50%), Gaps = 39/474 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIVE 130
M + E + F Y+ +G+LVN K+R + K F + E + Y +D + G++ II E
Sbjct: 128 MSQSGQKERCVCFNYFEDGQLVNTKFRSVDAKHFKMVQGAELIPYNIDSVLGQTSCIIHE 187
Query: 131 GEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
GE+D S AGF + +SVP GA S++S + E + + + +I+A
Sbjct: 188 GELDAASSLAAGFKSVISVPAGANSNLSWLDRFME-------------THFEDLTEVIIA 234
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D G L +EL R+G ERC V + KDANE L G +L+ +E A
Sbjct: 235 VDTDSAGLQLRDELINRLGAERCRVVTYGPG-----CKDANEHLCKYGVASLRVAIEQAA 289
Query: 251 LYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGK 310
P+ G+F D ++ A + G G TGW ++++ G L I+TGVP +GK
Sbjct: 290 EVPLEGVFTAADLHSDLLALFENGFGP--GAETGWEEMDKICTYERGRLVILTGVPGAGK 347
Query: 311 SEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
SEW+D L+ + WK S EN + H RKL+EK F + G +E + V
Sbjct: 348 SEWLDELVLRLCLRHQWKIAFFSPENTPIVYHIRKLVEKLTGHRFQKG--CGISEGLLVR 405
Query: 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
E +L++ S I + ++ P+ VL A V+R G R LVIDP N LDH
Sbjct: 406 SEE----FLTDNVSHISLKGNATPA--RVLAKAHELVVRRGCRILVIDPLNRLDHTPQPG 459
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEPP---NLYDISGSAHFINK 485
QTET+Y+S L M+ FA H C V VAHPR+++ N V +YDI+GSA F NK
Sbjct: 460 QTETQYLSNFLNMITEFAVQHNCLVVLVAHPRKMNRNPVTNTTPRVEMYDINGSADFFNK 519
Query: 486 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 539
D GIV+ R+++ + +V V KV+ K +G G +Y+ V+G Y+ V
Sbjct: 520 ADYGIVVERDKE-----VGVTRVYVDKVKFKHLGMGGMVTFAYDPVSGRYLPCV 568
>gi|159490076|ref|XP_001703015.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270922|gb|EDO96753.1| predicted protein [Chlamydomonas reinhardtii]
Length = 928
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 186/339 (54%), Gaps = 57/339 (16%)
Query: 223 DVDHFKDANEVLMYLGPGALKEVV-ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 281
D KDAN+VL+ GP L ++ E A + GL FR+Y + + +YY + G+
Sbjct: 371 DTGRRKDANDVLVLDGPERLARLLAEEARPAKLRGLATFREYEEALTSYYLQEDPLALGV 430
Query: 282 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
STGW +L++ Y V PGELTIVTG+PNSGKSE++DAL+ N+ E+ GW F +CS+E H
Sbjct: 431 STGWPSLDKYYRVAPGELTIVTGIPNSGKSEFLDALLVNLAENHGWAFAMCSLEKGPVPH 490
Query: 342 ARKLLEKHIKKPFFEANYGGS-AERMTVEEFEQGKAWLSNTFSLIR---CENDSLPSIKW 397
+ L+EK ++KPF + G M++ E G W+++ F LIR ++ PSI W
Sbjct: 491 LKALIEKRMRKPFKTTKHNGQWVPAMSMPELVSGFQWVADHFHLIRYDEADDTGSPSIDW 550
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
VL++A+ AV+R V++FA+ CHVWFV
Sbjct: 551 VLNMARIAVMRS---------------------------------VRKFARETDCHVWFV 577
Query: 458 AHPRQLH----------NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--- 504
AHPRQ H G P LYDISGSAH+ NK DNGIV+HR + A P+
Sbjct: 578 AHPRQQHAARTGGKGGGGAGGSSPGLYDISGSAHWFNKTDNGIVVHRRFEVRADPLSGKE 637
Query: 505 ------RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
V++ ++KVRNK VGT G+ +L Y+R TG Y D
Sbjct: 638 VRMALPEVEIKLQKVRNKDVGTQGQTYLLYDRPTGRYAD 676
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 100/204 (49%), Gaps = 46/204 (22%)
Query: 59 RLISAETLRRNRV--------MQKRHGHEV---VIAFPYWRNGKLVNCKYRDFNKKFWQ- 106
R IS + +R R+ + K G +V + FPY+ +G++VN K R F ++ Q
Sbjct: 99 RRISDDVIRAARLYVEPAPPLLDKASGRQVPRLALCFPYFVHGRIVNVKKRFFVPEWAQP 158
Query: 107 --EKD------TEKVFYGLDDI---------EGESDIIIVEGEMDKLSMEEAGFLNCVSV 149
+KD E V YG DD+ G +++VEGEMDKL++ G+ N VSV
Sbjct: 159 FSKKDFRLGYGCELVAYGHDDLMRHIAAAGGGGAVTVVVVEGEMDKLALNTVGYWNVVSV 218
Query: 150 PDGA---------PSSVSKKNVPSE------EQDTKYQYLWNCKMYLKQASR--IILATD 192
P+GA P + ++ SE E+ Y +L + L ++ +LATD
Sbjct: 219 PNGAALAKLNPANPDAPPRQQFSSEPDRAAAEEARYYSWLESLLRLLPDPAKAVFVLATD 278
Query: 193 GDPPGQALAEELARRVGRERCWRV 216
D G+ L EL RR+GRERCW V
Sbjct: 279 TDTAGRGLRAELMRRLGRERCWEV 302
>gi|427387567|ref|ZP_18883552.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
gi|425724966|gb|EKU87839.1| hypothetical protein HMPREF9447_04585 [Bacteroides oleiciplenus YIT
12058]
Length = 588
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 169/464 (36%), Positives = 235/464 (50%), Gaps = 41/464 (8%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E I F Y+ NG+LVN K+R K F KD E + Y +D I S+ I+ EGE+D S
Sbjct: 134 ENCICFNYFENGELVNTKFRSGQKHFKMVKDAELIPYNIDGILNTSECIVTEGELDAASF 193
Query: 139 EEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
G + VSVP GA S+++ + +P+ +D K Y+ A D D
Sbjct: 194 ITIGRKDTVSVPSGANSNLAWLDRFIPTHFEDKKTVYI---------------AVDEDSA 238
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 256
G L EEL RR+G ERC V + KD NE L+ G +L + AE P+ G
Sbjct: 239 GLKLREELVRRLGAERCRIVHFGPG-----CKDGNEHLVKYGADSLGICLAQAEEIPLEG 293
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 316
+F D E+ A Y +G G TGW ++ + L IV+G P GKSEW+D
Sbjct: 294 VFTADDVSKELRALYE--NGMAGGAETGWPNFDKYCTLELQRLMIVSGRPGDGKSEWVDE 351
Query: 317 LICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
L+ + WK S EN + H RKL+EK + F + G MT E +EQ
Sbjct: 352 LVIRLCLRHEWKIAYFSPENMPIIYHHRKLIEK-LTGLGFNPHIG-----MTEELYEQSV 405
Query: 376 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
+L++ I D SI +L A+ V+R G+R LVIDP N +D + P QTE +Y
Sbjct: 406 RFLTDNVCHI-LPGDEDYSIDTILSKARGLVVRRGIRILVIDPLNRIDQRLPQGQTELQY 464
Query: 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKCDNGIV 491
+S +L + RFA H+ C V VAHPR+++ G P +YDI GS+ F NK D GIV
Sbjct: 465 LSSLLNSLSRFATHYHCLVILVAHPRKMNRNPVTGITPCVEMYDIFGSSDFYNKADFGIV 524
Query: 492 IHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ RD + G V++ + KV+ K +G+ GEA YN + G Y
Sbjct: 525 V--ERDDKKG---MVRIHIDKVKFKHLGSPGEATFVYNVINGRY 563
>gi|298387690|ref|ZP_06997241.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
gi|298259546|gb|EFI02419.1| DNA primase/helicase [Bacteroides sp. 1_1_14]
Length = 599
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 235/470 (50%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGTKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S GF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLATGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLIEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEP---PNLYDISGSAHFINKC 486
+ET+Y+S L + FA + C V VAHPR+++ N V P++YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPDMYDVNGSADFFNKA 520
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D G+V+ R+++ + +V V KV+ K +GT G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGTGGVATFVYDPVSGRYL 565
>gi|29346582|ref|NP_810085.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29338478|gb|AAO76279.1| DNA primase/helicase [Bacteroides thetaiotaomicron VPI-5482]
Length = 599
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 235/470 (50%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGTKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S GF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLATGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLIEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEP---PNLYDISGSAHFINKC 486
+ET+Y+S L + FA + C V VAHPR+++ N V P++YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPDMYDVNGSADFFNKA 520
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D G+V+ R+++ + +V V KV+ K +GT G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGTGGVATFVYDPVSGRYL 565
>gi|380695157|ref|ZP_09860016.1| DNA primase/helicase [Bacteroides faecis MAJ27]
Length = 602
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 234/470 (49%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E + F Y+ +GKLVN K+R K F + E + Y +D + G+ II EG
Sbjct: 129 MSQSGAKERCVCFNYFEDGKLVNTKFRSGAKNFKMVQGAELIPYNIDSVLGQDTCIIHEG 188
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA +++S + E + + II+A
Sbjct: 189 ELDAASSLAAGFKSVISVPAGANANLSWLDRFMES-------------HFENLKDIIIAV 235
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L +EL R+G ERC + KDANE L+ G +L+ +E AE
Sbjct: 236 DTDSAGLKLRDELVNRLGAERCRVAVYGPG-----CKDANEHLVKYGIDSLRIAIEQAEE 290
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D +++ A + G G TGW ++++ L IVTG+P +GKS
Sbjct: 291 IPLEGIFTAADLHEDLRALFDNGFGP--GAETGWEEMDKICTYERRRLVIVTGIPGAGKS 348
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK + F N G E + +
Sbjct: 349 EWLDELVLRLCMRHQWKIAFFSPENNPIVYHLRKLVEKLTGRRF--QNGCGMTEGLLL-- 404
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ + +L+ I + + P + VL A+ VLR G R V DP N +H Q
Sbjct: 405 --RSEEFLAENVCHIALKGSATP--ERVLAKARELVLRRGCRIFVFDPVNRFEHTPAPGQ 460
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-NWVGEP---PNLYDISGSAHFINKC 486
+ET+Y+S L + FA + C V VAHPR+++ N V P +YD++GSA F NK
Sbjct: 461 SETQYLSNFLNLFTEFATQYNCLVILVAHPRKMNRNPVTNHTPRPEMYDVNGSADFFNKA 520
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D G+V+ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 521 DYGLVVERDKE-----VGVTRVYVEKVKFKHLGAGGVATFVYDPVSGRYL 565
>gi|270296576|ref|ZP_06202775.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272563|gb|EFA18426.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 604
Score = 224 bits (572), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 179/553 (32%), Positives = 255/553 (46%), Gaps = 52/553 (9%)
Query: 1 MCFRAKCGWK----GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYF 56
+C+ CG+K + R K + + R T D ++ N R +
Sbjct: 46 LCYCHHCGYKLYVPDDAEERLKQQRRDMHRKPTAPPQHFRRPTFDPARMQLSENLERYWT 105
Query: 57 AERLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
R + E LR R+ ++ E I F Y+ NG LVN KYR K F K
Sbjct: 106 TVRCLPQELLRTLRITEETVRLPESSQEENCICFNYFENGTLVNTKYRSALKHFMMVKGA 165
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQD 168
E + Y +D I G + II EGE D ++ AG + VSVP GA S+++ + V S +D
Sbjct: 166 ELIPYNVDSILGTPECIITEGEFDAAAIIAAGRKDVVSVPAGAQSNLTWLDRFVESHFED 225
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
KQA I +A D DP GQ+L +EL RR+G ERC V + + K
Sbjct: 226 -------------KQA--IYIAVDEDPAGQSLRQELTRRLGVERCRIVHFGEG-----CK 265
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE L+ G +L+ +E AE P+ G+F D D++ + Y +G + G TGW
Sbjct: 266 DANEHLVKYGAESLRICIEQAEEMPLEGIFTAEDCGDDLRSLYE--NGLQRGADTGWDNF 323
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLE 347
+E P L ++TG P GKSE+ D L+ + WK S EN + H KL E
Sbjct: 324 DEHCTFEPRRLLVMTGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLAE 383
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K F MT + Q WL S I ++ S I +L+ A+ V
Sbjct: 384 KLTGHRF------TPGPGMTEAVYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVVR 436
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH--- 464
R GVR LVIDP N L+ + QTE +Y++ L + RF + C V VAHPR+++
Sbjct: 437 RKGVRILVIDPMNRLEQRLEPGQTEMDYITDTLNKLGRFTTRNQCLVILVAHPRKVNRNE 496
Query: 465 -NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-G 522
+ + DI+GSA+F N D +V+ RN + I + KVR K +G+
Sbjct: 497 KDGTRRRVEMNDINGSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAHT 551
Query: 523 EAFLSYNRVTGEY 535
EA YN + G Y
Sbjct: 552 EAKFVYNHLNGRY 564
>gi|293372731|ref|ZP_06619112.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|336414701|ref|ZP_08595047.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|423298095|ref|ZP_17276154.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
gi|292632240|gb|EFF50837.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|335933813|gb|EGM95815.1| hypothetical protein HMPREF1017_02155 [Bacteroides ovatus
3_8_47FAA]
gi|392664037|gb|EIY57580.1| hypothetical protein HMPREF1070_04819 [Bacteroides ovatus
CL03T12C18]
Length = 599
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 231/461 (50%), Gaps = 43/461 (9%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEA 141
+ F ++ NG+LVN K+RD K F + + Y +D I + I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 142 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201
G + +SVP+GA S + + SE + +Q I L+ D D G+ L
Sbjct: 206 GRTDVISVPNGANSQLDWLDELSES-------------HFEQKQVIYLSVDTDRKGRELC 252
Query: 202 EELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFR 261
EL+RR+G +RC V + + +KDANE+L+ GP AL + +E+A + + G F
Sbjct: 253 RELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRLEGTFTAE 307
Query: 262 DYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 319
D + + + TSG E GI L+E+ + G + VTG+P GKS+++D ++
Sbjct: 308 DLRERLHQLFEEGYTSGVELGIPN----LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVL 363
Query: 320 NINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
+ W+ S EN + H KL EK + F + T EEF + +L
Sbjct: 364 RLCTRQDWRAGYFSPENTPIEYHHAKLAEKLLGHRF-------RKDFSTEEEFARVVDYL 416
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
S I + D ++ VL A+ V RHG+R VIDPYN ++HQ P TET Y+
Sbjct: 417 SQRVWHILPDGDF--TLGNVLSKARELVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGS 474
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 494
+ + RFA+ ++C V VAHPR+++ G E P +YDI+GSA+F N D GIV+ R
Sbjct: 475 FMNSLARFARLNSCLVILVAHPRKMNKQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDR 534
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ + V + V K R + GT G A Y+ G Y
Sbjct: 535 QDE-----MGIVYIHVEKTRFRNFGTKGNAAFCYDVTNGRY 570
>gi|317479937|ref|ZP_07939052.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|423307090|ref|ZP_17285089.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|423308327|ref|ZP_17286317.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
gi|316903882|gb|EFV25721.1| DNA primase/helicase [Bacteroides sp. 4_1_36]
gi|392676983|gb|EIY70403.1| hypothetical protein HMPREF1072_04029 [Bacteroides uniformis
CL03T00C23]
gi|392687563|gb|EIY80855.1| hypothetical protein HMPREF1073_01067 [Bacteroides uniformis
CL03T12C37]
Length = 604
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 181/554 (32%), Positives = 258/554 (46%), Gaps = 54/554 (9%)
Query: 1 MCFRAKCGWK----GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYF 56
+C+ CG+K + R K + + R T D ++ L L Y+
Sbjct: 46 LCYCHHCGYKLYVPDDAEERLKQQRRDMHRKPAAPPQHFRRPTFDPARMQ-LSESLERYW 104
Query: 57 AE-RLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD 109
R + E LR R+ ++ + E I F Y+ NG LVN KYR K F K
Sbjct: 105 TTVRCLPQELLRTLRITEETVRLPESNQEENCICFNYFENGTLVNTKYRSALKHFMMVKG 164
Query: 110 TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQ 167
E + Y +D I G + II EGE D ++ AG + VSVP GA S+++ + V S +
Sbjct: 165 AELIPYNVDSILGTPECIITEGEFDAAAVIAAGRKDVVSVPAGAQSNLTWLDRFVESHFE 224
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
D KQA I +A D DP GQ+L +EL RR+G ERC V + +
Sbjct: 225 D-------------KQA--IYIAVDEDPAGQSLRQELTRRLGVERCRIVHFGEG-----C 264
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
KDANE L+ G +L+ +E AE P+ G+F D D++ + Y +G + G TGW
Sbjct: 265 KDANEHLVKYGAESLRICIEQAEEVPLEGIFTAEDCRDDLRSLYE--NGLQRGADTGWDN 322
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLL 346
+E P L ++TG P GKSE+ D L+ + WK S EN + H KL
Sbjct: 323 FDEHCTFEPRRLLVMTGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLA 382
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
EK F MT + Q WL S I ++ S I +L+ A+ V
Sbjct: 383 EKLTGHRF------TPGPGMTEALYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVV 435
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH-- 464
R GVR LVIDP N L+ + QTE +Y++ L + RFA + C V VAHPR+++
Sbjct: 436 RRKGVRILVIDPMNRLEQRLEPGQTEMDYITDTLNKLGRFATRNQCLVILVAHPRKVNRN 495
Query: 465 --NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI- 521
+ + DI+GSA+F N D +V+ RN + I + KVR K +G+
Sbjct: 496 EKDGTLRRVEMNDINGSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAH 550
Query: 522 GEAFLSYNRVTGEY 535
EA YN + G Y
Sbjct: 551 TEAKFVYNHLNGRY 564
>gi|160889423|ref|ZP_02070426.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
gi|156860940|gb|EDO54371.1| hypothetical protein BACUNI_01847 [Bacteroides uniformis ATCC 8492]
Length = 604
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 176/553 (31%), Positives = 254/553 (45%), Gaps = 52/553 (9%)
Query: 1 MCFRAKCGWK----GSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYF 56
+C+ CG+K + R K + + R T + ++ N R +
Sbjct: 46 LCYCHHCGYKLYVPDDAEERLKQQRRDMHRKPTAPPQHFRRPTFNPARMQLSENLERYWT 105
Query: 57 AERLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
R + E LR R+ ++ E I F Y+ NG LVN KYR K F K
Sbjct: 106 TVRCLPQELLRTLRITEETVRLPESSQEENCICFNYFENGTLVNTKYRSALKHFMMVKGA 165
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQD 168
E + Y +D I G + II EGE D ++ AG + VSVP GA S+++ + V S +D
Sbjct: 166 ELIPYNVDSILGTPECIITEGEFDAAAVIAAGRKDVVSVPAGAQSNLTWLDRFVESHFED 225
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+ Y +A D DP GQ+L +EL RR+G ERC V + + K
Sbjct: 226 KQTIY---------------IAVDEDPAGQSLRQELTRRIGVERCRIVHFGEG-----CK 265
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DANE L+ G +L+ +E AE P+ G+F D D++ + Y +G + G TGW
Sbjct: 266 DANEHLVKYGAESLRICIEQAEEVPLEGIFTAEDCRDDLRSLYE--NGLQRGADTGWDNF 323
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLE 347
+E P L ++TG P GKSE+ D L+ + WK S EN + H KL E
Sbjct: 324 DEHCTFEPRRLLVMTGRPGDGKSEFTDELVLRLCLRHEWKIAFFSPENMPIAYHLHKLAE 383
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
K F MT + Q WL S I ++ S I +L+ A+ V
Sbjct: 384 KLTGHRF------TPGPGMTEAVYGQAVGWLDRNVSHILPDDGSY-GIDHILEKARQVVR 436
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH--- 464
R GVR LVIDP N L+ + QTE +Y++ L + RFA + C V VAHPR+++
Sbjct: 437 RKGVRILVIDPMNRLEQRLEPGQTEMDYITDTLNKLGRFATRNQCLVILVAHPRKVNRNE 496
Query: 465 -NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-G 522
+ + DI+GSA+F N D +V+ RN + I + KVR K +G+
Sbjct: 497 KDGTRRRVEMNDINGSANFANMSDFCLVVDRNDTKQIATI-----YIEKVRFKHLGSAHT 551
Query: 523 EAFLSYNRVTGEY 535
EA YN + G Y
Sbjct: 552 EAKFVYNHLNGRY 564
>gi|262409381|ref|ZP_06085924.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644921|ref|ZP_06722657.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294808819|ref|ZP_06767549.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|345509457|ref|ZP_08789055.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229446161|gb|EEO51952.1| DNA primase/helicase [Bacteroides sp. D1]
gi|262352833|gb|EEZ01930.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639734|gb|EFF58016.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443991|gb|EFG12728.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 599
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 231/461 (50%), Gaps = 43/461 (9%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEA 141
+ F ++ NG+LVN K+RD K F + + Y +D I + I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 142 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201
G + +SVP+GA S + + SE + +Q I L+ D D G+ L
Sbjct: 206 GRTDVISVPNGANSQLDWLDELSES-------------HFEQKQVIYLSVDTDRKGRELC 252
Query: 202 EELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFR 261
EL+RR+G +RC V + + +KDANE+L+ GP AL + +E+A + + G F
Sbjct: 253 RELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRLEGTFTAE 307
Query: 262 DYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 319
D + + + TSG E GI L+E+ + G + VTG+P GKS+++D ++
Sbjct: 308 DLREGLHQLFEEGYTSGVELGIPN----LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVL 363
Query: 320 NINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
+ W+ S EN + H KL EK + F + T EEF + +L
Sbjct: 364 RLCTRQDWRAGYFSPENTPIEYHHAKLAEKLLGHRF-------RKDFSTEEEFARVVDYL 416
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
S I + D ++ VL A+ V RHG+R VIDPYN ++HQ P TET Y+
Sbjct: 417 SQRVWHILPDGDF--TLGNVLSKARELVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGS 474
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 494
+ + RFA+ ++C V VAHPR+++ G E P +YDI+GSA+F N D GIV+ R
Sbjct: 475 FMNSLARFARLNSCLVILVAHPRKMNKQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDR 534
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ + V + V K R + GT G A Y+ G Y
Sbjct: 535 QDE-----MGIVYIHVEKTRFRNFGTKGNAAFCYDVTNGRY 570
>gi|336406254|ref|ZP_08586914.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
gi|335935282|gb|EGM97240.1| hypothetical protein HMPREF0127_04227 [Bacteroides sp. 1_1_30]
Length = 599
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 231/461 (50%), Gaps = 43/461 (9%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEA 141
+ F ++ NG+LVN K+RD K F + + Y +D I + I+VEGE D LS
Sbjct: 146 LCFNFFENGELVNTKFRDSQKHFKLLQGARTIPYNIDAIRDTPECILVEGEFDALSYMAV 205
Query: 142 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201
G + +SVP+GA S + + SE + +Q I L+ D D G+ L
Sbjct: 206 GRTDVISVPNGANSQLDWLDELSES-------------HFEQKQVIYLSVDTDRKGRELC 252
Query: 202 EELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFR 261
EL+RR+G +RC V + + +KDANE+L+ GP AL + +E+A + + G F
Sbjct: 253 RELSRRLGVDRCRIVTYGEA-----YKDANELLVAEGPDALLKALEDAPIPRLEGTFTAE 307
Query: 262 DYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 319
D + + + TSG E GI L+E+ + G + VTG+P GKS+++D ++
Sbjct: 308 DLREGLHQLFEEGYTSGVELGIPN----LDEIMRLETGRVLTVTGIPGHGKSDFVDEIVL 363
Query: 320 NINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
+ W+ S EN + H KL EK + F + T EEF + +L
Sbjct: 364 RLCTRQDWRAGYFSPENTPIEYHHAKLAEKLLGHRF-------RKDFSTEEEFARVVDYL 416
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
S I + D ++ VL A+ V RHG+R VIDPYN ++HQ P TET Y+
Sbjct: 417 SQRVWHILPDGDF--TLGNVLSKARELVHRHGIRVFVIDPYNYINHQIPAGMTETGYIGS 474
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 494
+ + RFA+ ++C V VAHPR+++ G E P +YDI+GSA+F N D GIV+ R
Sbjct: 475 FMNSLARFARLNSCLVILVAHPRKMNKQYGTQKTEVPTMYDINGSANFFNMTDYGIVVDR 534
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ + V + V K R + GT G A Y+ G Y
Sbjct: 535 QDE-----MGIVYIHVEKTRFRNFGTKGNAAFCYDVTNGRY 570
>gi|160885998|ref|ZP_02067001.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
gi|156108811|gb|EDO10556.1| hypothetical protein BACOVA_04004 [Bacteroides ovatus ATCC 8483]
Length = 612
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 227/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ G+L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 202
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 249
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVIRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|265751835|ref|ZP_06087628.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
gi|263236627|gb|EEZ22097.1| DNA primase/helicase [Bacteroides sp. 3_1_33FAA]
Length = 507
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 102
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 163 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 280
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 339
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 398
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 459 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
HP +L G P LYDI+GSA F NK D G+VI RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVIDRNDE-----LGQVLVRVAKVR 446
Query: 515 NKVVGTIGEAFLSYNRVTGEY 535
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|345513107|ref|ZP_08792630.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|345456297|gb|EEO44890.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 653
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 170/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 102
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 149 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLSQTGKEEACICFPYLEDGVMKNMKFRDAAK 208
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 209 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 262
Query: 163 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 263 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 313
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 280
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 314 ---EGCKDANEYLLKYDLSRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 367
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 339
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 368 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 427
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 398
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 428 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 477
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 478 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 537
Query: 459 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
HP +L G P LYDI+GSA F NK D G+VI RN + + +V V V KVR
Sbjct: 538 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVIDRNDE-----LGQVLVRVAKVR 592
Query: 515 NKVVGTIGEAFLSYNRVTGEY 535
+G G+AF +++ G Y
Sbjct: 593 FDHLGGPGDAFFAFSTYNGRY 613
>gi|294776206|ref|ZP_06741691.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|294449889|gb|EFG18404.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 507
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 102
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GKMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 163 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDKRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 280
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 339
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 398
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 459 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 515 NKVVGTIGEAFLSYNRVTGEY 535
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|423240299|ref|ZP_17221414.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
gi|392644400|gb|EIY38139.1| hypothetical protein HMPREF1065_02037 [Bacteroides dorei
CL03T12C01]
Length = 652
Score = 222 bits (565), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 165/465 (35%), Positives = 234/465 (50%), Gaps = 44/465 (9%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 184 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 243
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 197
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 244 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDKRG 290
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
L +EL RR+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 291 VELRDELVRRLGMDRCKVVAW-----GEGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 345
Query: 258 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 316
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 346 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 402
Query: 317 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 403 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 455
Query: 376 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 456 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 512
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 490
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 513 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 572
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
VI RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 573 VIDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 612
>gi|423229487|ref|ZP_17215892.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|423245329|ref|ZP_17226403.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
gi|392633700|gb|EIY27640.1| hypothetical protein HMPREF1063_01712 [Bacteroides dorei
CL02T00C15]
gi|392639436|gb|EIY33256.1| hypothetical protein HMPREF1064_02609 [Bacteroides dorei
CL02T12C06]
Length = 507
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 102
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GEMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 163 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGMDRCKVVAWG-- 167
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 280
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 339
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 398
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 459 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 515 NKVVGTIGEAFLSYNRVTGEY 535
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|150006399|ref|YP_001301143.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
gi|149934823|gb|ABR41521.1| DNA primase/helicase [Bacteroides vulgatus ATCC 8482]
Length = 507
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 169/501 (33%), Positives = 245/501 (48%), Gaps = 50/501 (9%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK 102
G + R I + L R ++ + + E I FPY +G + N K+RD K
Sbjct: 3 GKMMEYMVGRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDAAK 62
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 63 HFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA------ 116
Query: 163 PSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 117 -------NLQWLDRFVESHFDDKTEIILAMDTDRRGVELRDELVRRLGVDRCKVVAWG-- 167
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDEFG 280
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G G
Sbjct: 168 ---EGCKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMPEG 221
Query: 281 ISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR 339
TG L+ L G + VTGVP SGKSE++D + + WK S EN +
Sbjct: 222 ADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTPLA 281
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWV 398
H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S V
Sbjct: 282 YHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES---V 331
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H + VA
Sbjct: 332 LRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLILVA 391
Query: 459 HPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
HP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V KVR
Sbjct: 392 HPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAKVR 446
Query: 515 NKVVGTIGEAFLSYNRVTGEY 535
+G G+AF +++ G Y
Sbjct: 447 FDHLGGPGDAFFAFSTYNGRY 467
>gi|319643662|ref|ZP_07998279.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345521427|ref|ZP_08800753.1| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
gi|317384692|gb|EFV65654.1| DNA primase/helicase [Bacteroides sp. 3_1_40A]
gi|345456550|gb|EET14796.2| DNA primase/helicase [Bacteroides sp. 4_3_47FAA]
Length = 666
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 170/503 (33%), Positives = 248/503 (49%), Gaps = 51/503 (10%)
Query: 48 LGNELRAYFAERL-ISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKYRDF 100
+ E+ Y +R I + L R ++ + + E I FPY +G + N K+RD
Sbjct: 160 MNGEMMEYMVDRRGIPMDVLTRMKIEERLEFLPQTGKEEACICFPYLEDGVMKNMKFRDA 219
Query: 101 NKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
K F K E + + +D I+G+ I EGE+D LS+ AG VSVP+GA +
Sbjct: 220 AKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSLIAAGLEEVVSVPNGAGGA---- 275
Query: 161 NVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 219
Q+L + + + IILA D D G L +EL RR+G +RC V W
Sbjct: 276 ---------NLQWLDRFVESHFDDKAEIILAMDTDKRGVELRDELVRRLGVDRCKVVAWG 326
Query: 220 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI-DAYYHRTSGDE 278
+ KDANE L+ L++ VE A P+ G+F D +D + D YY +G
Sbjct: 327 EG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGVFCPMDEWDTLMDIYY---NGMP 378
Query: 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK- 337
G TG L+ L G + VTGVP SGKSE++D + + WK S EN
Sbjct: 379 EGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDEIAMRLLLRHDWKVGYFSPENTP 438
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIK 396
+ H RKL+ + + K F + M + E Q +L+ + FS++ E+ S+ S
Sbjct: 439 LAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAIRYLAQSVFSIMPKEDFSVES-- 489
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
VL +A V R GV+ LV+DP+N +HQ P +TET+Y+S++ FA H +
Sbjct: 490 -VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQYISRIFDEFSNFAVKHKVLLIL 548
Query: 457 VAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512
VAHP +L G P LYDI+GSA F NK D G+V+ RN + + +V V V K
Sbjct: 549 VAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGMVVDRNDE-----LGQVLVRVAK 603
Query: 513 VRNKVVGTIGEAFLSYNRVTGEY 535
VR +G G+AF +++ G Y
Sbjct: 604 VRFDHLGGPGDAFFAFSTYNGRY 626
>gi|262407888|ref|ZP_06084436.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|262354696|gb|EEZ03788.1| DNA primase/helicase [Bacteroides sp. 2_1_22]
gi|295084423|emb|CBK65946.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 612
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 202
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 249
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGATRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|299145381|ref|ZP_07038449.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
gi|298515872|gb|EFI39753.1| DNA primase/helicase [Bacteroides sp. 3_1_23]
Length = 612
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 202
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 249
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTATDLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|345511634|ref|ZP_08791174.1| DNA primase/helicase [Bacteroides sp. D1]
gi|229443930|gb|EEO49721.1| DNA primase/helicase [Bacteroides sp. D1]
Length = 597
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGATRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|423213312|ref|ZP_17199841.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
gi|423287009|ref|ZP_17265860.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392673841|gb|EIY67296.1| hypothetical protein HMPREF1069_00903 [Bacteroides ovatus
CL02T12C04]
gi|392693772|gb|EIY87002.1| hypothetical protein HMPREF1074_01373 [Bacteroides xylanisolvens
CL03T12C04]
Length = 597
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|336416370|ref|ZP_08596705.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
gi|335938787|gb|EGN00671.1| hypothetical protein HMPREF1017_03813 [Bacteroides ovatus
3_8_47FAA]
Length = 597
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|212691424|ref|ZP_03299552.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
gi|212666034|gb|EEB26606.1| hypothetical protein BACDOR_00916 [Bacteroides dorei DSM 17855]
Length = 705
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 234/465 (50%), Gaps = 44/465 (9%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 237 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 296
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 197
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 297 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDKRG 343
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
L +EL RR+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 344 VELRDELVRRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 398
Query: 258 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 316
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 399 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 455
Query: 317 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 456 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 508
Query: 376 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 509 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 565
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 490
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 566 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 625
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 626 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 665
>gi|423314135|ref|ZP_17292070.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
gi|392683733|gb|EIY77067.1| hypothetical protein HMPREF1058_02682 [Bacteroides vulgatus
CL09T03C04]
Length = 692
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 164/465 (35%), Positives = 234/465 (50%), Gaps = 44/465 (9%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 224 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 283
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 197
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 284 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDRRG 330
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
L +EL RR+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 331 VELRDELVRRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 385
Query: 258 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 316
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 386 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 442
Query: 317 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 443 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 495
Query: 376 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 496 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 552
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 490
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 553 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 612
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 613 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 652
>gi|423297971|ref|ZP_17276031.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
gi|392664608|gb|EIY58146.1| hypothetical protein HMPREF1070_04696 [Bacteroides ovatus
CL03T12C18]
Length = 597
Score = 219 bits (558), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 226/470 (48%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-------------THFEDLEEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 289
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEDMDKICTYERGRSVYVTGVPGAGKS 347
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|224539181|ref|ZP_03679720.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519196|gb|EEF88301.1| hypothetical protein BACCELL_04083 [Bacteroides cellulosilyticus
DSM 14838]
Length = 604
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 169/551 (30%), Positives = 254/551 (46%), Gaps = 48/551 (8%)
Query: 1 MCFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTI----REITEDSLELEPLGNELRAYF 56
+C+ CG K + Q +K+++ + R D+ + + N R +
Sbjct: 46 LCYCHHCGHKFYVPDDAEERERQQLKEKYNRTSKLPSHFRRPVFDAAKAKLSENLERYWT 105
Query: 57 AERLISAETLRRNRVMQK------RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT 110
ER ++ L R+ ++ H E + F Y+ NG L+N KYR K F K
Sbjct: 106 QERCLAQHLLAELRITEECIMLPESHELENCLCFNYFENGTLINTKYRSGRKHFMMVKGA 165
Query: 111 EKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTK 170
E + Y +D I + II EGE D + AG + +SVP GA ++++ + DT
Sbjct: 166 ELIPYNIDAILDTPECIITEGEFDAAAFMSAGRKDVISVPAGAQNNLTWMD---RFVDTH 222
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
++ I +ATD D G+ L EL RR+G ERC V + + KDA
Sbjct: 223 FE----------PKQLIYIATDEDNSGRLLQRELVRRLGTERCRLVHFGPE-----CKDA 267
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
NE L+ G +L + AE P+ G+F D D + +G + G TGW L+E
Sbjct: 268 NEHLIRYGAESLLITLAQAEEIPLEGVFTAEDRQDAFRTLFE--NGLQRGAETGWDNLDE 325
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLLEKH 349
G + +G P GKSE+ID L+ + GWK S EN E H KL EK
Sbjct: 326 NCTFETGRFVVTSGFPGDGKSEFIDELVLRLCLRHGWKIGYFSPENMPMEYHLAKLSEKL 385
Query: 350 IKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409
PF MT + + WL++ + I + S ++ +L+ A+ V R
Sbjct: 386 TGHPF------RPGAGMTETLYNRVVRWLTDNVTHILPDTGSY-TVDCILEKARQLVRRR 438
Query: 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----N 465
G+R VIDP N +D Q QTE +Y++ +L + RFAQ H C + VAHPR+++ N
Sbjct: 439 GMRIFVIDPLNRIDQQLEPGQTELQYITSLLNKLSRFAQQHKCLIILVAHPRKVNRNTTN 498
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI-GEA 524
+ DI+GSA+F N D +++ RN D E V + + KVR K +G+ A
Sbjct: 499 GERRRAEMNDINGSANFGNMADYCLIVDRNDDKEI-----VTIHIDKVRFKHLGSAHTNA 553
Query: 525 FLSYNRVTGEY 535
YNR+ G Y
Sbjct: 554 KFVYNRINGRY 564
>gi|92118809|ref|YP_578538.1| TOPRIM domain-containing protein [Nitrobacter hamburgensis X14]
gi|91801703|gb|ABE64078.1| toprim domain-containing protein [Nitrobacter hamburgensis X14]
Length = 515
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 161/485 (33%), Positives = 236/485 (48%), Gaps = 63/485 (12%)
Query: 81 VIAFPYWRNGKLVNCKYR-----DFNKKFWQEKDTEKVFYGLDDIE------GESDIIIV 129
++ FPY N + KYR D +K WQ + + FY D ++ G + ++I
Sbjct: 48 ILVFPYLENETEIAAKYRGKPRPDGSKVIWQRANGRRTFYNADVLDDPKLSDGSAALVIT 107
Query: 130 EGEMDKLSMEEAGFLNCVSVPDGAP---SSVSKKNVPSEE--------QDTKYQYLWNCK 178
EGE D L++ AG+ VSVPDGAP + K P E D KY++L N
Sbjct: 108 EGEPDCLAVLSAGYPFAVSVPDGAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNW 167
Query: 179 MYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLG 238
LK+ R IL TD D PG L +ELARR+GR RC V +P D DANEVL+ G
Sbjct: 168 ERLKKIKRFILMTDDDGPGHRLRDELARRLGRVRCSFVSYPDCGD--RKPDANEVLIRHG 225
Query: 239 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN----ELYNV 294
+ +++ NA YP+ G++ ++ D ++TGW L+ E
Sbjct: 226 ASTVVDMIANATPYPVKGIYRMSEFPDPPAMQ---------PVTTGWGRLDLPVQEGMAG 276
Query: 295 LPGELTI---VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK-HI 350
L EL + V G+P SGKS W L NI GW + + E KV+ + +KLL ++
Sbjct: 277 LMMELGLFMTVLGIPGSGKSTWTTQLAANIARVHGWNIGIATFEMKVKPYMQKLLRNAYL 336
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVL 407
+P E + + ++ F + CE D P+I WVLD A AV+
Sbjct: 337 GQPASEVH-------PLDPRLKAADQFIEQRFMFMSCEIDDDAEDPTIDWVLDRASDAVI 389
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
R G+ L+IDP+NEL+H R ++ TEYV + + +KRFA+ + V V HP +
Sbjct: 390 RFGLNVLIIDPWNELEHHRRRDESLTEYVGRAIKKLKRFARVNNVLVIVVIHPTKEGGLK 449
Query: 468 GEPP-NLYDISGSAHFINKCDNGIVI---HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
G +LYD + S+H++NK D GI I H+N+ ++ V V K+R++ G G
Sbjct: 450 GAGSLSLYDAADSSHWVNKADYGIKIESDHQNQ--------QLTVEVGKIRHRPTGRRGR 501
Query: 524 AFLSY 528
Y
Sbjct: 502 TIFQY 506
>gi|423276974|ref|ZP_17255888.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
gi|404587450|gb|EKA91989.1| hypothetical protein HMPREF1203_00105 [Bacteroides fragilis HMW
610]
Length = 606
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 164/466 (35%), Positives = 222/466 (47%), Gaps = 46/466 (9%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E + F Y+ +GKLVN K+R K F E + Y +D + G + I EGE+D S
Sbjct: 139 ERCLCFNYFEDGKLVNTKFRTLQKHFRMVSGAELIPYHIDALRGTPECIFTEGELDAASF 198
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 198
G + VSVP GA S++ + E +L+ I +A D D G
Sbjct: 199 MAIGRRDVVSVPSGANSNLQWMDRFVE-------------THLEDKRLIYIAVDTDEAGL 245
Query: 199 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 258
L EL RR+G ERC V + KDANE L G +L+ +E AE PI G+F
Sbjct: 246 GLRAELLRRLGVERCRVVVYGPG-----CKDANEHLCKYGAESLRIALEQAEEVPIEGVF 300
Query: 259 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
+E+ A Y R G G+ TGW + L L IVTG P GKSEW+D L+
Sbjct: 301 TAAGLEEELRALYER--GFTPGVETGWENFDALCTFELRRLMIVTGKPGDGKSEWVDELV 358
Query: 319 CNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 377
+ W S EN + H RKL EK + F+ G S +GK +
Sbjct: 359 LRLCLRHHWDIAFFSPENIPIVYHLRKLAEK-LTGCRFQPGCGMS----------EGK-Y 406
Query: 378 LSNTFSLIRCENDSLP----SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
L + L LP ++ VL+ + V R G+R LV+DP N L+H P QTET
Sbjct: 407 LCVSRYLTEHVCHILPRGECTLDAVLETGRRLVARRGIRILVVDPLNRLEHSIPPGQTET 466
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE--PPN--LYDISGSAHFINKCDNG 489
+Y+S +L + FA H C V VAHPR+++ G P +YDI+GSA F NK D G
Sbjct: 467 QYLSSVLNRLSAFAVRHQCLVILVAHPRKMNRLPGSGFTPRVEMYDINGSADFFNKADFG 526
Query: 490 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
IV+ R+ I ++ V KV+ K +G G A YN V+G Y
Sbjct: 527 IVVERD-----DTIGVARIHVDKVKFKHLGGKGMASFVYNPVSGRY 567
>gi|336405392|ref|ZP_08586071.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
gi|335937973|gb|EGM99867.1| hypothetical protein HMPREF0127_03384 [Bacteroides sp. 1_1_30]
Length = 597
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 157/470 (33%), Positives = 225/470 (47%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L +E A
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLCIAIEQAAE 289
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 290 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 347
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 348 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 401
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 402 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 459
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 460 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 519
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 520 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 564
>gi|427382316|ref|ZP_18879036.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
gi|425729561|gb|EKU92412.1| hypothetical protein HMPREF9447_00069 [Bacteroides oleiciplenus YIT
12058]
Length = 604
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 179/552 (32%), Positives = 258/552 (46%), Gaps = 50/552 (9%)
Query: 1 MCFRAKCGWK---GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYF 56
+C+ CG+K + + Q L+K S++ + R T D + + L +L Y+
Sbjct: 46 VCYCHHCGYKLYVPDDAEERQRKQRQEQLRKVSQLPSHFRRPTFDPAKAK-LSEKLEKYW 104
Query: 57 A-ERLISAETLRRNRVMQ---KRHGH---EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD 109
ER ++ L R+ + K G+ E + F Y+ NG L+N KYR K F
Sbjct: 105 TQERCLAQNLLAELRITEECTKLPGNNEIENCLCFNYFENGILINTKYRSALKHFKMVTG 164
Query: 110 TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 169
E + Y +D I + II EGE D + AG + +SVP GA S+++ + E
Sbjct: 165 AELIPYNIDAIADTPECIITEGEFDACAFMSAGRKDVISVPAGAQSNLTWMDRFVE---- 220
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
+ +Q I +A D D GQAL EL RR+G ERC V + KD
Sbjct: 221 ---------THFEQKKVIYIAADEDGAGQALRHELVRRLGAERCRLVHFGPG-----CKD 266
Query: 230 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 289
ANE L+ G +L + AE P+ G+F DY +++ A + +G G TGW +
Sbjct: 267 ANEHLIRYGAESLLITLAQAEEIPLEGVFTAEDYREDLRALFE--NGLCRGADTGWDNFD 324
Query: 290 ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEK 348
G + TG P GKSE+ID L+ + GWK S EN V H KL+EK
Sbjct: 325 ANCTFETGRSVVATGSPGHGKSEFIDELVLRLCLRHGWKIAYFSPENSPVNYHHAKLIEK 384
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
F G MT E + WL+ + I D+ +I +L+ A+ V R
Sbjct: 385 LTGLQF------GPVPGMTEELYNHSVNWLTANVTHILPGTDAC-TIDHILEKARQLVYR 437
Query: 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL--HNW 466
GVR LVIDP N LD Q QTE Y++ +L + RFA H C V VAHPR++ +
Sbjct: 438 RGVRILVIDPLNRLDQQLEPGQTELMYITSLLGKLNRFAVQHKCLVILVAHPRKMNRNTA 497
Query: 467 VGE--PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-E 523
GE + DI+GSA+F N D + + R+ + V V + KVR K +G+ +
Sbjct: 498 TGELRRVEMNDINGSANFGNMSDYCLCVSRDDAKQL-----VTVYIDKVRFKHLGSANTD 552
Query: 524 AFLSYNRVTGEY 535
A YNR+ G Y
Sbjct: 553 AKFVYNRLNGRY 564
>gi|293373001|ref|ZP_06619370.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292632069|gb|EFF50678.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 617
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 225/470 (47%), Gaps = 38/470 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ +L+N K+R K F + E + Y +D I G++ II E
Sbjct: 143 MPQSGKKERCICFNYFEGEQLINTKFRALPKLFKMVQGAELIPYNIDSILGQTSCIIHER 202
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 203 ELDAASSIAAGFKSAISVPAGANSNLSWIDRFME-------------THFEDLEEIIIAV 249
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D G L EL R+G ERC V + + KDANE L G +L+ +E A
Sbjct: 250 DADSAGIRLRNELINRLGAERCRVVTYGPE-----CKDANEHLCKYGIASLRIAIEQAAE 304
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
P+ G+F D D++ A + G G TGW ++++ G VTGVP +GKS
Sbjct: 305 VPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGVPGAGKS 362
Query: 312 EWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
EW+D L+ + WK S EN + H RKL+EK F N G E +
Sbjct: 363 EWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTEGL---- 416
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ +L+ S I + + P VL A V+R G R +V DP N DH Q
Sbjct: 417 LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDHNPQPGQ 474
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSAHFINKC 486
TET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA F NK
Sbjct: 475 TETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSADFYNKA 534
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
D GI++ R+++ + +V V KV+ K +G G A Y+ V+G Y+
Sbjct: 535 DYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMASFVYDPVSGRYL 579
>gi|237712140|ref|ZP_04542621.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
gi|229453461|gb|EEO59182.1| DNA primase/helicase [Bacteroides sp. 9_1_42FAA]
Length = 710
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 163/465 (35%), Positives = 233/465 (50%), Gaps = 44/465 (9%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E I FPY +G + N K+RD K F K E + + +D I+G+ I EGE+D LS+
Sbjct: 242 EACICFPYLEDGVMKNMKFRDAAKHFKMVKGAELIPWNIDAIKGKEKCYITEGEIDALSL 301
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN-CKMYLKQASRIILATDGDPPG 197
AG VSVP+GA + Q+L + + + IILA D D G
Sbjct: 302 IAAGLEEVVSVPNGAGGA-------------NLQWLDRFVESHFDDKTEIILAMDTDRRG 348
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
L +EL R+G +RC V W + KDANE L+ L++ VE A P+ G+
Sbjct: 349 VELRDELVCRLGVDRCKVVAWGEG-----CKDANEYLLKYDLPRLRQQVEQAAEIPLEGV 403
Query: 258 FNFRDYFDEI-DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDA 316
F D +D + D YY +G G TG L+ L G + VTGVP SGKSE++D
Sbjct: 404 FCPMDEWDTLMDIYY---NGMPEGADTGLENLDRLIKFERGFVLTVTGVPGSGKSEFVDE 460
Query: 317 LICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ + WK S EN + H RKL+ + + K F + M + E Q
Sbjct: 461 IAMRLLLRHDWKVGYFSPENTPLAYHYRKLIRRVVGKRF-------EHKGMPLPEAGQAI 513
Query: 376 AWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
+L+ + FS++ E+ S+ S VL +A V R GV+ LV+DP+N +HQ P +TET+
Sbjct: 514 RYLAQSVFSIMPKEDFSVES---VLRIAAQLVSRKGVKVLVVDPFNRFEHQIPDWETETQ 570
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGI 490
Y+S++ FA H + VAHP +L G P LYDI+GSA F NK D G+
Sbjct: 571 YISRIFDEFSNFAVKHKVLLILVAHPTKLRREPGSKRWPVPTLYDINGSAAFFNKTDYGM 630
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
V+ RN + + +V V V KVR +G G+AF +++ G Y
Sbjct: 631 VVDRNDE-----LGQVLVRVAKVRFDHLGGPGDAFFAFSTYNGRY 670
>gi|85716575|ref|ZP_01047545.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
gi|85696576|gb|EAQ34464.1| toprim domain-containing protein [Nitrobacter sp. Nb-311A]
Length = 515
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 167/528 (31%), Positives = 241/528 (45%), Gaps = 85/528 (16%)
Query: 55 YFAERLISAETLRRNRVMQKRH------------GHEVVIAFPYWRNGKLVNCKYR---- 98
+FA R I E + R + R ++ FPY N V KYR
Sbjct: 10 WFAARAIDLEIVSRMGIYSARRDDTGDSGAVIPDASGDILVFPYLENEAEVAAKYRGRPR 69
Query: 99 -DFNKKFWQEKDTEKVFYGLDDIE------GESDIIIVEGEMDKLSMEEAGFLNCVSVPD 151
D +K WQ + + FY D ++ G + ++I EGE D L++ AG+ VSVPD
Sbjct: 70 ADGSKVLWQRANGRRTFYNADVLDDPKLSDGSAALVITEGEPDCLAVLSAGYPFAVSVPD 129
Query: 152 GAP---SSVSKKNVPSEE--------QDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 200
GAP + K P E D KY++L N LK+ R IL TD D PG L
Sbjct: 130 GAPPDKDAHGNKLPPVPETADDVDPNNDDKYRFLVNNWERLKKIKRFILMTDDDGPGHRL 189
Query: 201 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF 260
+ELARR+GR RC V +P DANEVL+ G + +++ NA YP+ G++
Sbjct: 190 RDELARRLGRVRCSFVTYPDCGG--KKPDANEVLIRHGASTVVDMIANATPYPVKGIYRM 247
Query: 261 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP------------GELTIVTGVPNS 308
++ D ++TGW L+ LP G V G+P S
Sbjct: 248 SEFPDPPAMQ---------PVTTGWGRLD-----LPVQEGMAGLMMDLGLFMTVLGIPGS 293
Query: 309 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK-HIKKPFFEANYGGSAERMT 367
GKS W L N+ GW + + E KV+ + +KLL ++ +P S
Sbjct: 294 GKSTWTTQLAANLARAHGWNIGIATFEMKVKPYMQKLLRNAYLGEP-------ASGVHPF 346
Query: 368 VEEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424
++ F + CE D P+I WVLD A AV+R G+ L+IDP+NEL+H
Sbjct: 347 DPRLRAADQFIEQRFMFMSCEIDDDAEDPTIDWVLDRAGDAVVRFGLNVLIIDPWNELEH 406
Query: 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP-NLYDISGSAHFI 483
R ++ TEYV + + +KRFA+ + V V HP + G +LYD + S+H++
Sbjct: 407 HRRRDESLTEYVGRAIKKLKRFARVNNVLVIVVIHPTKEGGLKGAGSLSLYDAADSSHWV 466
Query: 484 NKCDNGIVI---HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 528
NK D GI I H+N+ ++ V V KVR++ G G Y
Sbjct: 467 NKADYGIKIESDHQNQ--------QLTVEVGKVRHRPTGRRGSTIFEY 506
>gi|302832832|ref|XP_002947980.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f. nagariensis]
gi|300266782|gb|EFJ50968.1| hypothetical protein VOLCADRAFT_88130 [Volvox carteri f. nagariensis]
Length = 1522
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 128/344 (37%), Positives = 170/344 (49%), Gaps = 82/344 (23%)
Query: 230 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 289
A +VL+ G AL+ +V+ A YP+ GL + + E+ +++ G+STGW L+
Sbjct: 1032 AGDVLLEDGREALRWLVDAARPYPVRGLVDVTGLWGELLQHWYGKEQTAAGVSTGWPGLD 1091
Query: 290 ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE-- 347
ELY V PGELT+VTGVPNSGKS W+DAL + AGW+ S E + HA+ L+E
Sbjct: 1092 ELYKVTPGELTVVTGVPNSGKSHWLDALAVQLASGAGWRIAFASFEKSITRHAQNLIELA 1151
Query: 348 -----------------------KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
H +KP F + M+ EF++ W++ F L
Sbjct: 1152 APRCFSPAPPGSLLMSMLAAGPIHHTQKPMFSSQ---GFPLMSPGEFQEALNWINEHFVL 1208
Query: 385 IR---------------------------CENDSLP----------------------SI 395
IR E D+ +I
Sbjct: 1209 IRHADMADEFTAVAAAGGRSGPAGREGIPAEGDAADEGDADVGVVEEEEEAGGPRQPCTI 1268
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM----VKRFAQHHA 451
WVL A AV R+G+RGLVIDPYNEL+ QR +QTETEYVS +L VKR+AQ H
Sbjct: 1269 DWVLARATQAVYRYGIRGLVIDPYNELE-QRRGAQTETEYVSALLGKGSGRVKRWAQRHL 1327
Query: 452 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
HVW VAHP+ + W G PP +YDISGSAH+ NK D GIV+H +
Sbjct: 1328 VHVWLVAHPKSMEEWDGGPPTMYDISGSAHWYNKADMGIVVHSS 1371
>gi|393783851|ref|ZP_10372022.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
gi|392668293|gb|EIY61794.1| hypothetical protein HMPREF1071_02890 [Bacteroides salyersiae
CL02T12C01]
Length = 605
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 159/476 (33%), Positives = 226/476 (47%), Gaps = 42/476 (8%)
Query: 68 RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDII 127
+ M + E + F Y+ G LVN KYR K F E + Y +D I + I
Sbjct: 127 QTETMPQTGQQENCLCFNYFEEGALVNVKYRSGAKHFKMVAGAELIPYNIDAIADTPECI 186
Query: 128 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQAS 185
+ EGE+D S G + +SVP GA +++ + V S ++ + Y+
Sbjct: 187 VTEGELDAASFLATGRADAISVPSGANGNLTWLDRFVESHFENKRLIYI----------- 235
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 245
A D D G L EL RR G ERC V + + KDANE L+ G +L+
Sbjct: 236 ----AVDTDAAGLKLRAELLRRFGPERCRIVTYGPE-----CKDANEHLVKYGVESLRIA 286
Query: 246 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 305
+ AE P+ G F D E+ A Y G G TGW + L + L IVTG
Sbjct: 287 LSQAEEVPLEGAFTADDLAVELRALYENGFGP--GAETGWENFDSLCTLELQRLLIVTGT 344
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAE 364
P SGKSEW+D L+ + W S EN + H RKL EK + F+ G
Sbjct: 345 PGSGKSEWVDELVLRLCLRHDWPAGFFSPENIPIVYHLRKLAEKLTAR-RFQPGLG---- 399
Query: 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424
MT +E+ +L+ I + D ++ +L + V R G+R VIDP N ++H
Sbjct: 400 -MTEGLYERITRYLAKHVCHILPKEDF--TVDAILSKGRELVARRGIRIFVIDPLNRIEH 456
Query: 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEP--PNLYDISGSA 480
QTET+Y+S +L + FA + C V VAHPR+++ G+ P +YDI+GSA
Sbjct: 457 DMRPGQTETQYLSTLLNRLSGFATRNHCLVVLVAHPRKMNRNAITGQTPRPEMYDINGSA 516
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
F NK D G+V+ RD AG V++ V KV+ K +G GEA Y+ V+G Y+
Sbjct: 517 DFYNKADFGVVV--ERDDAAG---VVRIHVEKVKFKHLGRPGEAQFVYDPVSGRYL 567
>gi|147864827|emb|CAN83644.1| hypothetical protein VITISV_004912 [Vitis vinifera]
Length = 198
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 103/108 (95%)
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
TETEYVSQMLTM+KRFAQHH+CHVWFVAHPRQLH W G PPN+YDISGSAHFINKCDNGI
Sbjct: 85 TETEYVSQMLTMIKRFAQHHSCHVWFVAHPRQLHQWNGGPPNMYDISGSAHFINKCDNGI 144
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
VIHRNR+PEAGP+D+VQVCVRKVRNKVVGTIG+AFLSY+R++G Y DI
Sbjct: 145 VIHRNRNPEAGPVDQVQVCVRKVRNKVVGTIGDAFLSYDRISGVYTDI 192
>gi|294010982|ref|YP_003544442.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
gi|292674312|dbj|BAI95830.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S]
Length = 482
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 234/468 (50%), Gaps = 41/468 (8%)
Query: 80 VVIAFPYWRNGKLVNCKYRDFNKKFWQEKD--TEKVFYGLDDIEGES----DIIIVEGEM 133
++++ PY G+ +N KYRD K Q D +D + ES +IIVEGE
Sbjct: 35 MILSVPYREGGRTLNHKYRDPLDKARQAMDQGAPLTLLNIDCLSDESLAGQPLIIVEGEW 94
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D L+ AG VSVP+GAP S + ++ +Y + W L + +ILA D
Sbjct: 95 DFLATLTAGKRRVVSVPNGAPKEASGDD--ELQEGARYAWFWRHYDALSRIKSVILAVDN 152
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ALA +L R G ERC V +P KD N+V+++ G L EV++ A+ YP
Sbjct: 153 DEPGKALAADLCRLFGPERCSFVEYPAG-----CKDPNDVVIHSGHQRLVEVLDAAKPYP 207
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 313
+ GL+ D F E +Y TG L+EL+ ++P T+ TG GK+ +
Sbjct: 208 VKGLYALDD-FPEQPSYQ--------AWPTGVGELDELFQIVPRTFTVATGYAGQGKTSF 258
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+ ++ N+ G S E ++ + + ++ E G + +E +
Sbjct: 259 LMWILANLIRR-GIHVTAASFETDIK----PIFHRKLRAAILET---GEFAQHEPKERDW 310
Query: 374 GKAWLSNTFSLIR---CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ ++I +++ S++ VLDL +A+V+R+G R L+IDP+NE+DH+R +
Sbjct: 311 ADGMIRRYLAIISHSPMDDEDALSVEDVLDLGRASVIRNGTRLLLIDPWNEIDHKRRGDE 370
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP--PNLYDISGSAHFINKCDN 488
+ET+Y + + ++KRFA+ + VW +AHP + G+P P LYDISGSA++ NK D
Sbjct: 371 SETDYTGRAIRLMKRFAKQNDVAVWVIAHPAKPSQLQGKPRMPGLYDISGSANWANKADY 430
Query: 489 GIVIH-RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
G+ ++R+ + V KVR + G +G + ++ Y
Sbjct: 431 GLCFQIKSREYWT-----TTIAVTKVRMGLPGKMGSVVIQFDPRRSSY 473
>gi|189464137|ref|ZP_03012922.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
gi|189437927|gb|EDV06912.1| hypothetical protein BACINT_00473 [Bacteroides intestinalis DSM
17393]
Length = 427
Score = 204 bits (519), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 216/435 (49%), Gaps = 41/435 (9%)
Query: 108 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS--KKNVPSE 165
KD E + Y +D I + II EGEMD S G + VSVP GA S+++ + +P+
Sbjct: 3 KDAELIPYNIDSILDTPECIITEGEMDAASFVTIGRRDVVSVPSGANSNLTWLDRFIPTH 62
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 225
+D K Y+ A D D G L +EL RR+G ERC V +
Sbjct: 63 FEDKKTIYI---------------AVDEDSAGLKLRDELLRRLGTERCRIVHFGPG---- 103
Query: 226 HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KDANE L G +L +E AE P+ G+F + E+ A Y +G G TGW
Sbjct: 104 -CKDANEHLAQFGAESLGICIEQAEEIPLEGVFTAEELAGELRALYE--NGMSSGAETGW 160
Query: 286 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARK 344
++ + L +++G P GKSEW+D L+ + WK S EN + H RK
Sbjct: 161 ENFDKYCTLELQRLLLISGRPGDGKSEWLDELVMRLCLRHQWKVAYFSPENMPIVYHHRK 220
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
L+EK + F + G MT E +++ +L+ I D SI +L A+
Sbjct: 221 LIEK-LTGFGFNPSVG-----MTEELYQKSVQFLTENVCHI-LPGDEDYSIDTILQKARG 273
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 464
V+R G+R LVIDP N +D + P QTE +Y+S +L + RFA H+ C V VAHPR+++
Sbjct: 274 LVVRKGIRILVIDPLNRIDQRLPPGQTELQYLSSLLNSLSRFATHYHCLVILVAHPRKMN 333
Query: 465 N--WVGEPP--NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
G P +YDI GS+ F NK D GI++ RD + G V + V KV+ K +GT
Sbjct: 334 RNPLTGVTPCVGMYDIFGSSDFYNKADFGIIVE--RDDQKG---LVTIHVEKVKFKHLGT 388
Query: 521 IGEAFLSYNRVTGEY 535
G A YN V G Y
Sbjct: 389 PGNATFVYNIVNGRY 403
>gi|294646762|ref|ZP_06724385.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294807707|ref|ZP_06766500.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|292637922|gb|EFF56317.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294445143|gb|EFG13817.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 436
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 146/434 (33%), Positives = 210/434 (48%), Gaps = 38/434 (8%)
Query: 108 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
+ E + Y +D I G++ II EGE+D S AGF + +SVP GA S++S + E
Sbjct: 3 QGAELIPYNIDSILGQTSCIIHEGELDAASSIAAGFKSAISVPAGANSNLSWLDRFME-- 60
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
+ + II+A D D G L EL R+G ERC V + +
Sbjct: 61 -----------THFEDLEEIIIAVDADSAGIRLRNELINRLGAERCRVVTYGPE-----C 104
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
KDANE L G +L+ +E A P+ G+F D D++ A + G G TGW
Sbjct: 105 KDANEHLCKYGIASLRIAIEQAAEVPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEE 162
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLL 346
++++ G VTGVP +GKSEW+D L+ + WK S EN + H RKL+
Sbjct: 163 MDKICTYERGRSVYVTGVPGAGKSEWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLI 222
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
EK F N G E + + +L+ S I + + P VL A V
Sbjct: 223 EKLTGHRF--QNGCGMTEGL----LANSEDFLTENVSHISLKGNVSPD--RVLAKAHELV 274
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN- 465
+R G R +V DP N DH QTET+Y+S +L FA H C + V HPR+++
Sbjct: 275 VRRGCRIIVFDPLNRFDHNPQPGQTETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRN 334
Query: 466 -WVGEPP--NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 522
G P +YDI+GSA F NK D GI++ R+++ + +V V KV+ K +G G
Sbjct: 335 PVTGITPRVEMYDINGSADFYNKADYGIIVERDKE-----VGATRVYVDKVKFKHLGVGG 389
Query: 523 EAFLSYNRVTGEYM 536
A Y+ V+G Y+
Sbjct: 390 MASFVYDPVSGRYL 403
>gi|189465512|ref|ZP_03014297.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
gi|189437786|gb|EDV06771.1| hypothetical protein BACINT_01870 [Bacteroides intestinalis DSM
17393]
Length = 604
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 219/463 (47%), Gaps = 38/463 (8%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
E + F Y+ NG L+N KYR K F E + Y +D I + II EGE D +
Sbjct: 134 ENYLCFNYFENGVLINTKYRSALKHFRMVTGAELIPYNIDAIADTPECIITEGEFDACAF 193
Query: 139 EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 198
AG + +SVP GA S+++ + E + + I +A D D GQ
Sbjct: 194 MTAGRKDVISVPAGAQSNLTWMDRFVES-------------HFEPKKVIYIAADEDGAGQ 240
Query: 199 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 258
AL EL RR+G ERC V + KDANE L+ G +L + AE P+ G+F
Sbjct: 241 ALRHELVRRLGAERCRLVHFGPG-----CKDANEHLILYGAQSLLITLAQAEEIPLEGVF 295
Query: 259 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
DY +++ A + +G G TGW + G +V+G+ GKSE++D L+
Sbjct: 296 TAEDYREDLRALFE--NGLCRGADTGWENFDANCTFETGRNVVVSGMAGHGKSEFVDELV 353
Query: 319 CNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 377
+ WK S EN V H KL+EK F G MT E + W
Sbjct: 354 LRLCLRHEWKIAYFSPENLPVNYHHAKLIEKLTGLQF------GPGPGMTEELYNHAVNW 407
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437
L+ + I ++ +I +L+ A+ V R GVR LVIDP N LD Q QTE Y++
Sbjct: 408 LTANVTHILPGTEAC-TIDHILEKARQLVYRRGVRILVIDPLNRLDQQLEPGQTELMYIT 466
Query: 438 QMLTMVKRFAQHHACHVWFVAHPRQL--HNWVGE--PPNLYDISGSAHFINKCDNGIVIH 493
+L + RFA H C V VAHPR++ + GE + DI+GSA+F N D + ++
Sbjct: 467 SLLGKLGRFAAQHKCLVILVAHPRKMNRNTATGELRRVEMNDINGSANFGNMSDYCLCVN 526
Query: 494 RNRDPEAGPIDRVQVCVRKVRNKVVGT-IGEAFLSYNRVTGEY 535
R+ + V V + KVR K +G+ A YNR+ G Y
Sbjct: 527 RDDAKQL-----VTVYIDKVRFKHLGSGYTHAKFVYNRINGRY 564
>gi|423225958|ref|ZP_17212425.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392631232|gb|EIY25208.1| hypothetical protein HMPREF1062_04611 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 604
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 230/487 (47%), Gaps = 39/487 (8%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 114
A+RL++ + RV + + E + F Y+ G L+N KYR K F K E +
Sbjct: 110 LAQRLLADLHITEERVRLPESCEEENCLCFNYFEGGTLINTKYRSGRKHFMMVKGAELIP 169
Query: 115 YGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 174
Y +D I + II EGE D + G + +SVP GA S+++ + E
Sbjct: 170 YNIDAILDTPECIITEGEFDAAAFMTVGRKDVISVPAGAQSNLNWMDRFVES-------- 221
Query: 175 WNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVL 234
+ + I +A D D G+ L++EL RR+G +RC V + + KDANE L
Sbjct: 222 -----HFEPKKLIYIAVDEDSSGRLLSQELVRRLGSDRCRLVHFGPE-----CKDANEHL 271
Query: 235 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV 294
+ G +L +E AE P+ G+F D + + + +G + G TGW L+E
Sbjct: 272 IKYGAESLLITLEQAEEIPLEGVFTAEDRQEPLRTLFE--NGLQRGAETGWDNLDENCTF 329
Query: 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE-HARKLLEKHIKKP 353
G L + TG GKSE+ID L+ + WK S EN E H KL EK P
Sbjct: 330 ETGRLAVWTGRTGEGKSEFIDELVLRLCLRHEWKIGFFSPENMPMEYHLAKLAEKLTGHP 389
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
F MT + + WL++ + I ++ + ++ +L+ A+ V R GVR
Sbjct: 390 F------RPGPGMTEALYNRTTRWLTDNVTHILPDSGNY-TVDCILEKARQLVRRRGVRI 442
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGE 469
LV+DP N +D Q QTE +Y++ +L + RFA H C V VAHPR+++ N
Sbjct: 443 LVVDPLNRIDQQLEPGQTELQYITSLLNKLSRFALQHKCLVILVAHPRKVNRNTTNGELR 502
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE-AFLSY 528
+ DI+GSA+F N D + RN E V + + KVR K +G+ A Y
Sbjct: 503 RVEMNDINGSANFGNMADFCFTVDRNDGKEI-----VTIYIDKVRFKHLGSANTCAKFVY 557
Query: 529 NRVTGEY 535
NR+ G Y
Sbjct: 558 NRINGRY 564
>gi|329958017|ref|ZP_08298419.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328522036|gb|EGF49157.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 603
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 161/499 (32%), Positives = 235/499 (47%), Gaps = 51/499 (10%)
Query: 53 RAYFAERLISAETLRRNRVMQKRH------GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ 106
R + ER + E L R+ ++R E + F Y+ LVN K+R K F
Sbjct: 102 RYWTEERCLRQELLDELRITEQREWMPQSEKEENCLCFNYFEGDTLVNTKFRSGQKHFKM 161
Query: 107 EKDTEKVFYGLDDIEGESDIIIVEGEMDKLS-MEEAGFLNCVSVPDGAPSSVS--KKNVP 163
KD E + Y ++ I G +I EGE D + M G + +SVP GA S+++ + V
Sbjct: 162 VKDAELIPYNINGILGTRQAVITEGEFDACALMTATGRRDIISVPAGAQSNLTWIDRFVE 221
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
S +D + Y+ A D D G+ L EL RR+G E C VR+
Sbjct: 222 SHFEDKETVYI---------------AVDEDAAGEVLRRELVRRLGAECCKIVRYGAG-- 264
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
KD+NE L+ G +L ++ AE PI G+ D +++ A Y +G + G T
Sbjct: 265 ---CKDSNEHLIRYGADSLAICLQQAEEIPIEGVATADDCSEQLRALYE--NGLQGGAET 319
Query: 284 GWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHA 342
GW L+ G L ++TG P GKSE+ D L+ + GWK S EN V H
Sbjct: 320 GWENLDAHCTFELGRLVVITGRPGDGKSEFTDELVLRLRLRHGWKTAYYSPENLPVEYHL 379
Query: 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 402
+K+ +K + + F YG MT E ++Q + WL+ + I D I +L A
Sbjct: 380 KKIADKLLGRN-FAPGYG-----MTEELYDQARQWLAANVTHI-LPGDGAYRIDDILLKA 432
Query: 403 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
+ V R GVR LVIDP N L+ TE +++ +L + RFAQ + C V VAHPR+
Sbjct: 433 RQLVRRRGVRTLVIDPMNRLEQD--SGMTERDFIRSVLNKLCRFAQRNRCLVILVAHPRK 490
Query: 463 L--HNWVGE--PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
+ + GE + DI+GSA F N D I + RN + V + + KVR K +
Sbjct: 491 VNRNEATGELRRVEMNDINGSADFGNMTDYCIDVDRNDKKQI-----VTIYIDKVRFKHL 545
Query: 519 GTIGE-AFLSYNRVTGEYM 536
G+ G A YN ++G Y
Sbjct: 546 GSAGTCAKFVYNFISGRYF 564
>gi|294675400|ref|YP_003576016.1| Toprim domain-containing protein [Prevotella ruminicola 23]
gi|294473238|gb|ADE82627.1| Toprim domain protein [Prevotella ruminicola 23]
Length = 610
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 154/544 (28%), Positives = 253/544 (46%), Gaps = 57/544 (10%)
Query: 7 CGWKGSTSALV-DNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAET 65
CG+K S+ V D N+ + KK K+ D+ +L P+ Y +R I +T
Sbjct: 62 CGFKFVISSKVPDYNKKRGYQKKKFKLP-------DTSKLRPIDGIGINYLLDRKIQPQT 114
Query: 66 LRRNRVMQKRHGHEVV----IAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIE 121
+ V + + +AF Y K+VN +Y+ +K F E D E + + +D
Sbjct: 115 AAKAGVRSATRTFDGIERSCLAFTYREGSKVVNIQYKTTSKDFAVESDCELIPWNIDAAI 174
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
G+ +I+ EG MD L++ E GF N +SV +GA S V + +++Y +L
Sbjct: 175 GQDTLIVTEGMMDALALMECGFDNVISVSNGAESDVRTFD--------RFRY-----SHL 221
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
LA D D PG L ++LA G RC V W +D KDANE+LM G A
Sbjct: 222 DGIRTFYLAGDMDEPGVELRQKLALYFGEARCRIVEWRVGDDA--AKDANEMLMEHGVDA 279
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTS-----GDEFGISTGWRALNELYNVLP 296
+ + + +A+L PI+G+ + ID Y RT G G + GW ++ P
Sbjct: 280 VLQCINHAQLCPIVGV-------ETIDDYRERTKYIWEHGIAPGKTVGWGEFDDHVQFEP 332
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----MENKVREHARKLLEKHIK 351
G I+ G PN+GKS + D L+ N+ GWK L S E + A + + +
Sbjct: 333 GRTVIIVGEPNTGKSTFADDLVLNLALQHGWKAALYSPEMFPPERHIERMATTIAGRKFR 392
Query: 352 KPFFEANYGGSAERMTVEEFEQGKA--WL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
K + G + + E + WL SN F + S +I +L A+ R
Sbjct: 393 KELVQTERGVDYRKPLIPERMADRILDWLCSNVFFITET---SGRTIHKLLHRAEQLQHR 449
Query: 409 HGVRGLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
+G++ L++DP+N + Q P ++++T + +L ++ FA ++ V HP +
Sbjct: 450 YGIQQLLLDPFNYI--QLPEGAKSDTMKIGDVLAEIELFAHRTGLLIFVVVHPSKPQK-- 505
Query: 468 GEP-PNLYDISGSAHFINKCDNGIV-IHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
GE +LY+ SGSA F N+ D G+V ++ ++ +++ V KVR+ +G G
Sbjct: 506 GEQIDSLYNASGSAEFRNRADYGLVLVNDDKQCARNGYHLLKIIVDKVRDDAMGHKGTCH 565
Query: 526 LSYN 529
+S++
Sbjct: 566 VSFD 569
>gi|217978903|ref|YP_002363050.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
gi|217504279|gb|ACK51688.1| hypothetical protein Msil_2768 [Methylocella silvestris BL2]
Length = 531
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/450 (29%), Positives = 214/450 (47%), Gaps = 47/450 (10%)
Query: 101 NKKFWQEKDTEKVFYGLDDI--EGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSS 156
+K F K + F+ +D + S I + EGE D L++ EAG +SVP+GA
Sbjct: 109 DKAFVAGKGFKLSFWNIDRVLAAAPSRIYLTEGEFDALALVEAGVSADAVLSVPNGAKER 168
Query: 157 VSKKNVPSEEQDTKYQYLWNCKMY-LKQASRIILATDGDPPGQALAEELARRVGRERCWR 215
+ + P+E++ Y+++ + L + + DGD PG +L ++ + +G R
Sbjct: 169 AA--DAPAEQKG--YEFVDEALLAGLSGTKQFVWCGDGDGPGLSLRADMVKLLGAARFHF 224
Query: 216 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL-YPIMGLFNFRDYFDEIDAYYHRT 274
V WP D KDAN++L+ GP AL+ +VEN L +P+ GL+ R+ + R
Sbjct: 225 VDWP-----DGCKDANDLLVTDGPEALRALVENGALPWPVAGLYRMRELPEPAPLTLWRP 279
Query: 275 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334
E+ + P L++VTG P GK+ L N+ + S
Sbjct: 280 GFPEW---------ESKVMLAPRTLSVVTGHPGHGKTALWSQLWFNVVRAYDVGICVASF 330
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 394
E + + H R+ L GG + +T E AW+ + L + P+
Sbjct: 331 ETRPKPHLRRQLRTLFA--------GGLEKDLTEGEIAAADAWIDERY-LFVVHPEQKPT 381
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
++W LD+A+ AV+RHG R + +DP+N L+ R +++ET+Y+ + L + FA CHV
Sbjct: 382 LEWFLDMAEVAVIRHGARIVQVDPWNRLEGARERNESETDYIGRCLRTIHAFAHDLNCHV 441
Query: 455 WFVAHPRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHR-------NRDPEAGPIDRV 506
+AHP ++ + G PP+L DISGS H+ N D G V+HR NR EA
Sbjct: 442 QVLAHPAKMDSARRGSPPSLEDISGSKHWDNMVDQGFVVHRPEIFDGSNRKTEAA----- 496
Query: 507 QVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
+ RK R + +G + L Y+ G Y+
Sbjct: 497 -LYHRKARFEELGFPCKLNLDYSLAKGRYV 525
>gi|159465173|ref|XP_001690797.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279483|gb|EDP05243.1| predicted protein [Chlamydomonas reinhardtii]
Length = 720
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 98/176 (55%), Gaps = 33/176 (18%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
+I WVL A AV RHG+RGLVIDPYNEL+ QR SQ+ETEY+S ML+ VKR+AQ H H
Sbjct: 540 TIDWVLGKATQAVYRHGIRGLVIDPYNELEQQR-GSQSETEYISAMLSKVKRWAQRHMVH 598
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR------------------- 494
VW VAHP+ W G PP++YDISGSAH+ NK D G+V+HR
Sbjct: 599 VWLVAHPKSFEEWDGSPPSMYDISGSAHWYNKADMGVVVHRYTRVAMDAALKKYQAAAAS 658
Query: 495 -----------NRDPEAGPIDRVQVCVR--KVRNKVVGTIGEAFLSYNRVTGEYMD 537
R P A + ++ K RNK G G+ L+Y++ ++D
Sbjct: 659 SAELQSKLERLKRKPVALTFSETETLIKVVKARNKTSGAQGDYVLNYSKEQCRFLD 714
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 81/150 (54%), Gaps = 4/150 (2%)
Query: 238 GPGALKEVVE-NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 296
GP AL +VE A YP+ GL + +DEI +++ +STGW L+E+Y V P
Sbjct: 329 GPEALTWLVEQGARPYPVKGLMHVGGLWDEIIRHWYGKEATAAAVSTGWPGLDEVYRVTP 388
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GELTIVTGVPNSGKS W+DAL + W+ S E V +H + L+E + F
Sbjct: 389 GELTIVTGVPNSGKSHWLDALAVQLANVHEWRVGFASFEKSVVKHGQNLIELAARTSMFT 448
Query: 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
+ + MT ++F W++ F LIR
Sbjct: 449 PD---GRQNMTPDQFHTALDWVNTHFFLIR 475
>gi|383112843|ref|ZP_09933629.1| hypothetical protein BSGG_0300, partial [Bacteroides sp. D2]
gi|313692765|gb|EFS29600.1| hypothetical protein BSGG_0300, partial [Bacteroides sp. D2]
Length = 315
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 144/296 (48%), Gaps = 20/296 (6%)
Query: 246 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 305
+E A P+ G+F D D++ A + G G TGW ++++ G VTGV
Sbjct: 2 IEQAAEVPLEGIFTAADLHDDLRALFDNGFGP--GAETGWEEMDKICTYERGRSVYVTGV 59
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAE 364
P +GKSEW+D L+ + WK S EN + H RKL+EK F N G E
Sbjct: 60 PGAGKSEWVDELVLRLCLRHQWKIGFFSPENTPIVYHLRKLIEKLTGHRF--QNGCGMTE 117
Query: 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424
+ + +L+ S I + + P VL A V+R G R +V DP N DH
Sbjct: 118 GL----LANSENFLTENVSHISLKGNVSPD--RVLAKAHELVVRRGCRIIVFDPLNRFDH 171
Query: 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN--WVGEPP--NLYDISGSA 480
QTET+Y+S +L FA H C + V HPR+++ G P +YDI+GSA
Sbjct: 172 NPQPGQTETQYISNLLNKFTEFAVQHNCLLVVVVHPRKMNRNPVTGITPRVEMYDINGSA 231
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
F NK D GI++ R+++ + +V V KV+ K +G G Y+ V+G Y+
Sbjct: 232 DFYNKADYGIIVERDKE-----VGVTRVYVDKVKFKHLGVGGMVSFIYDPVSGRYL 282
>gi|386811700|ref|ZP_10098925.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386403970|dbj|GAB61806.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 592
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 208/464 (44%), Gaps = 61/464 (13%)
Query: 45 LEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK-- 102
L P G + YF +R IS +TL R V + IAF Y GKLV KYR K
Sbjct: 98 LTPFGQTIGEYFKKRGISQQTLERREVSECNGA----IAFLYREEGKLVLVKYRTPQKEP 153
Query: 103 KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
K W+E+ + VF+G+D + + ++IVEGE D L+++E N +SVP GA
Sbjct: 154 KHWREEGGKPVFWGMDLCDPQYPLVIVEGEPDALALDECNIKNAISVPSGAED------- 206
Query: 163 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 222
+ NC +L Q +I + D D G+ + ++L R+G+ RC+ V P
Sbjct: 207 --------LSCIENCWEWLNQFKKIKIWGDNDEAGKKMVDKLILRLGQFRCFIVNSP--- 255
Query: 223 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 282
+KDANE LM G ++++ VE A P+ G+ D T D I
Sbjct: 256 ----YKDANEHLMKEGTESVRKAVETAREVPVAGIKRLADV----------TKLDYSQIE 301
Query: 283 TGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
+ +L +L GELT+ TG +SGKS + ++ E F + + ++
Sbjct: 302 RVQSNIKKLDMILGGFRMGELTVWTGFNSSGKSTLLGQMLV---ESIDQDFPVFAYSGEL 358
Query: 339 REHA-RKLLEKHIKKP-----FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSL 392
H ++ + + P F++ ++ E + + W + F + +
Sbjct: 359 TLHLFKEWIHLQMVGPENLDFFYDYVENHDIAKVKAEVISKLENWYKDMFYVYDSYTTNE 418
Query: 393 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK--RFAQHH 450
P +LDL + A R+ + +ID N + +++ Y SQ + + K F + +
Sbjct: 419 PMK--ILDLCEIAARRYDCKVFLID--NLMTTGCDGIKSDNYYQSQSIFVGKLVEFTKRY 474
Query: 451 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
HV VAHPR+ + N DI+GS + ++ DN I IHR
Sbjct: 475 NVHVHLVAHPRKTVGML----NKMDIAGSGNITDRADNVIGIHR 514
>gi|451941130|ref|YP_007461768.1| phage related protein [Bartonella australis Aust/NH1]
gi|451900517|gb|AGF74980.1| phage related protein [Bartonella australis Aust/NH1]
Length = 613
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 58/466 (12%)
Query: 47 PLGNE----LRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDF 100
P G+E ++ Y ER I E L+R R+ +K G+ ++ FP+++ +G L K R
Sbjct: 113 PTGDEPHNLVKTYLHKERHIPLEILKRYRIKEK--GNSII--FPFYKPDGTLALVKER-L 167
Query: 101 NKKFWQEKDT----EKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPS 155
+ + K T E + +G + + +++I EGE+D LS+ G+ VS+P G S
Sbjct: 168 AEAGAKAKPTASQCEPILFGWQALSSKDRELVITEGEIDALSLAAYGY-AAVSIPFGGGS 226
Query: 156 SVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWR 215
K+N E D +L+ +I LATD D PG+ A E+A R+GR RC+R
Sbjct: 227 G-GKQNWIENEFD-----------HLEAFEKIFLATDMDTPGELAAIEIANRLGRHRCYR 274
Query: 216 VRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRT 274
VR P +KDAN+ L L L E A+ + GL DY D++ + +
Sbjct: 275 VRLP-------YKDANDCLKAGLEDSVLSEAFSQAKSFAPEGLHKASDYRDKVISLFWPA 327
Query: 275 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCS 333
G + + LN P ELT+ +G +GKS+ + I + I + + + L S
Sbjct: 328 PEQHLGYTVPYSKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLAS 385
Query: 334 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 393
+E K + R+L+++ G E+ T E + +L N L+ E+
Sbjct: 386 LEMKGEQSLRRLIKQT-----------GGREQPTQEMINRVLDFLDN--GLLLYEHVGTS 432
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
++ +LD+ ++G +ID L + + V +M+ +A +A H
Sbjct: 433 NVDTLLDVFDYCRAKYGCDQFIIDSLMRLGIASDDYTGQEQAVYKMVD----WAVLNAVH 488
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ VAH R+ N E P DI G++ N I I RNR E
Sbjct: 489 IHLVAHARK-SNLDKEVPGTEDIKGTSEIGANAFNIITIWRNRSLE 533
>gi|420137468|ref|ZP_14645449.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
gi|403249775|gb|EJY63250.1| hypothetical protein PACIG1_0948 [Pseudomonas aeruginosa CIG1]
Length = 603
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 215/502 (42%), Gaps = 66/502 (13%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-----NKKFWQEK 108
AY R ++ ET++ ++ + G +V FPY RNG L++ K KK
Sbjct: 128 AYLKGRGLTEETIKAFKIAE--DGQNIV--FPYLRNGSLIHWKKLGVERPGGKKKITTSS 183
Query: 109 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
DTE +G I +G ++ I EGE+D ++ + G +SVP G ++ + E
Sbjct: 184 DTEPCLFGWQAIPDGIREVTITEGEIDAMTAWQYG-RPALSVPFGGGKDGKQRWIEYEFD 242
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
+ L++ I L D D PG EE+ RR+GR+RC V+
Sbjct: 243 N------------LQRFDVIYLCLDDDEPGHQATEEIVRRLGRDRCRLVKL-------GC 283
Query: 228 KDANEVL--MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KD NE L +Y + E A+ + L + Y +E+ A ++ + + G+ W
Sbjct: 284 KDFNEALDALYYSADDIAECYAKAKNFDPERLKSVSSYSEEVKAEFYDQNPETIGMELPW 343
Query: 286 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW--KFVLCSMENKVREHAR 343
A P E+TI TG GKS+ ++ L + G +F + SME AR
Sbjct: 344 SAYANKIRFRPSEVTIWTGWSGHGKSQLLNYLAFHGMNRKGSQDRFCIASMEMP----AR 399
Query: 344 KLLEKHIKKPFFEANYGGSAERMTVE---EFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
+ L++ ++ +A+ R ++ ++ GK W+ + + +L+
Sbjct: 400 RTLQRMVR----QASGMSCPSRGYIDAILDWLDGKLWIYDQLGTAKTGE--------MLE 447
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVA 458
+ A R+GV ++D +L E +Y Q M + FA HV VA
Sbjct: 448 DFRYAARRYGVNHFIVDSLAKL------GMAEDDYNGQKQAMEALVGFAHEMNVHVHLVA 501
Query: 459 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--RVQVCVRKV--R 514
HPR+ + G+PP D+ G A + DN + RN+ E D + Q VR + +
Sbjct: 502 HPRKADD-EGKPPGKLDVRGGAILTDLADNVCTVWRNKRKEMAKGDDYKDQSDVRLIISK 560
Query: 515 NKVVGTIGEAFLSYNRVTGEYM 536
++ G G L +++ + +Y
Sbjct: 561 QRLTGDEGILDLWFDKASNQYF 582
>gi|431810342|ref|YP_007237227.1| putative DNA primase\helicase [Pseudomonas phage AF]
gi|409994719|gb|AFV50665.1| putative DNA primase\helicase [Pseudomonas phage AF]
Length = 599
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/500 (23%), Positives = 218/500 (43%), Gaps = 61/500 (12%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 108
AY R ++ ET++ ++ ++ I FP+ R+G+L++ K +D KK K
Sbjct: 126 AYLKGRGLTEETIKAFKIGEQGRN----ILFPFLRDGQLIHWKTLGVDRQDGKKKIMAAK 181
Query: 109 DTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
D+E +G I ++ ++ I EGE+D +S + G +SVP G + + + E +
Sbjct: 182 DSEPCLFGWQAIPSDAREVTITEGEIDAMSAWQYG-RPALSVPMGGGTGAKQNWIEHEYK 240
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
+ L++ I L D D PGQ +E+ +R+GRERC V+ K+ F
Sbjct: 241 N------------LERFDVIYLCLDDDAPGQEATDEIIKRLGRERCRVVKLGCKDFNTTF 288
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+Y + + E A+ L ++ D++ A + + + G+ W
Sbjct: 289 S------LYYDKDDIDQCYEKAKSQDPELLLGVTEFRDQVMAEFFEKNPIQLGMPNPWDK 342
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
++ E+TI TG GKS+ + + +G KF + SME AR+ L+
Sbjct: 343 AKDMIKFRSAEVTIWTGFSGHGKSQML-GYVAYRGMLSGSKFCVASMEMP----ARRTLQ 397
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
+ I++ A+ R V+ Q G+ W+ + +N +L+
Sbjct: 398 RMIRQAAGMAH----PSRGYVDAILQSMAGQLWIYDRLGAADIDN--------MLETFTY 445
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 464
A R+GV ++D +L V++ + +++ + FA HV VAHP++L
Sbjct: 446 AARRYGVDQFIVDSLAKLG----VAEDDYNGQKKLIEKLVAFAHETGAHVHLVAHPKKLE 501
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-------GPIDRVQVCVRKVRNKV 517
+ + P +D+ G + DN I + RN+ EA G + V + ++
Sbjct: 502 D-ESKAPGKHDVRGGVVITDLVDNVISVWRNKRKEARAEAGDDGIENEADVHAIISKQRL 560
Query: 518 VGTIGEAFLSYNRVTGEYMD 537
G G+ L ++ +G+Y++
Sbjct: 561 TGVEGKIALWFDPASGQYLE 580
>gi|329954623|ref|ZP_08295683.1| toprim domain protein [Bacteroides clarus YIT 12056]
gi|328527164|gb|EGF54168.1| toprim domain protein [Bacteroides clarus YIT 12056]
Length = 684
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/441 (26%), Positives = 197/441 (44%), Gaps = 54/441 (12%)
Query: 82 IAFPYWRNGKLVNCKYRD-------FNKKFWQEKDTEKVF-YGLDDI-------EGESDI 126
IA+ + NG+ VN KYR + K + QE T Y +D I E +
Sbjct: 212 IAYVNYINGQPVNVKYRSCDVSASGYTKCWSQESPTTPCPPYNIDCINPLRIAEENVPRL 271
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
I+ EGE D L++ EAG+ +SVP+GA S +SK + +L +
Sbjct: 272 IVTEGERDVLTLHEAGYPYVISVPNGAASDLSKG-------------FEAFRPWLDRVRE 318
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
+++ D D PG+ L + LA G RC P KD ++VL+ G G ++E++
Sbjct: 319 LVICGDCDLPGRTLVKHLADYFG-TRCLFTVLPGG-----CKDISDVLVMYGAGVVREII 372
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGD-EFGISTGWRALNE--LYNVLPGELTIVT 303
++A + + + DEI + SG+ + G G+ L + + G L I T
Sbjct: 373 DSACPHHTSDIITVSERADEI---MNVLSGNYDHGYDVGYGPLTDHVFHPTDQGGLIIAT 429
Query: 304 GVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR-EHARKLLEKHIKKPFFEANYGGS 362
G PNSGK+++++ L C + G S E + +H L+ + K A
Sbjct: 430 GKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHMANLIRLMLGKVNTAA----- 484
Query: 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422
T E+ + ++L + + S P+ +++ A+ ++ L+IDPY +
Sbjct: 485 ---YTREQLQPIVSFLDGHMAHLDLHEVS-PTPANIIERAERVKRAVPLKYLIIDPYLFM 540
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISG 478
+ + TET+ + MLT ++ + + + V VAHPR L G E ++Y ISG
Sbjct: 541 EVETGRYNTETQAIKAMLTQMQAWGRTNGIWVIIVAHPRSLKKLNGKNELEEIDMYTISG 600
Query: 479 SAHFINKCDNGIVIHRNRDPE 499
SA++ N D I R P+
Sbjct: 601 SANWANLADFIFSISRIEQPD 621
>gi|420255615|ref|ZP_14758497.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
gi|398044866|gb|EJL37661.1| hypothetical protein PMI06_08962 [Burkholderia sp. BT03]
Length = 595
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 127/474 (26%), Positives = 203/474 (42%), Gaps = 77/474 (16%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY----RDFN--KKFW 105
+R + R ++ ET+ RV R V+ FP+ R+G+LVN K+ RD N K W
Sbjct: 120 VRDWLLSRGLTDETITSFRVASSREDDAVI--FPFIRDGELVNVKHLLLKRDVNGKKNTW 177
Query: 106 QEKDTEKVFYGLDDIEGESDII-IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
Q + E +G I +I I EGE+D +S+ +AG + +SV GA
Sbjct: 178 QAEGAEPCLFGWHMINPAQRVIAITEGEIDAMSLHQAG-IPALSVNAGA----------- 225
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
+Q++ + L++ S I L D D PGQ A+E+A R+G +RC V +PK
Sbjct: 226 ----GNHQWIDSDWSKLERFSEIYLCYDNDEPGQNGAKEVANRLGLDRCKIVTFPKA--- 278
Query: 225 DHFKDANEVLMYLGPG-------ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 277
KDANE L A ++ EL P+ D++DE+ A +H
Sbjct: 279 ---KDANEYLQASASADDFRRCMAEARTLDPEELRPMT------DFWDEVKALFHPAHDQ 329
Query: 278 EFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
+ + + P ELT+ TG GKS + ++ + E G + + S E
Sbjct: 330 IANPVLSFCGEKQFWFEFRPAELTVWTGYSGHGKSLMLSQILIGVMEQ-GERVCVFSGEM 388
Query: 337 KVREHARKLLEK--HIKKP---FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 391
+ ++ + + +P F +A Y ER+ WL F+L+
Sbjct: 389 TPKRQGTRMARQLGGVGRPTIAFLDAMYDWLLERI----------WL---FNLV-----G 430
Query: 392 LPSIKWVLDLAKAAVLRHGVRGLVIDPY---NELDHQRPVSQTETEYVSQMLTMVKRFAQ 448
SI +L + R+G+R VID + L+ ++ E V ++ FA+
Sbjct: 431 TASIDRLLTVFTYGYKRYGIRHFVIDSLMMTDVLEDGAGAMTSQKEAVRKLAA----FAR 486
Query: 449 HHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 502
+ HV VAHPR+ + P D+SGS+ + DN I I + + P
Sbjct: 487 MNGVHVHLVAHPRKGQD-ERRAPGKMDVSGSSKLTDAADNVIAIWSAQKQDGDP 539
>gi|317474283|ref|ZP_07933559.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
gi|316909593|gb|EFV31271.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii
1_2_48FAA]
Length = 659
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 137/555 (24%), Positives = 231/555 (41%), Gaps = 95/555 (17%)
Query: 3 FRAKCGWKGSTSALVDNNRSQSSL-----------KKFSK--MKTIREITEDSLELEPLG 49
F A G K ++AL N + K S + I+ +T++ +P
Sbjct: 76 FPASAGRKNGSAALAGNVGGGETFVSEVSMIPDDYKHLSPDVLARIKPLTDEPETADPDQ 135
Query: 50 NELRAYFAERLISAET-------LRRNRVMQKRHGHEV---------VIAFPYWRNGKLV 93
R Y A++ IS +T +R + G + IA+ + NG+ V
Sbjct: 136 LAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAAGTMYHCIAYVNYVNGQPV 195
Query: 94 NCKYRDFN------KKFWQEKD--TEKVFYGLDDI-------EGESDIIIVEGEMDKLSM 138
N KYR + K W + T Y +D I E + +I+ EG D L++
Sbjct: 196 NVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISEESVARLIVTEGGRDVLTL 255
Query: 139 EEAGFLNCVSVPDGAPSSVSKKN---VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
EAG+ +SVP+GA S + K VP +L Q +++ D D
Sbjct: 256 YEAGYPYVISVPNGAASDLRKSFEAFVP----------------WLDQVRELVICGDCDL 299
Query: 196 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
PG+ L + LA G RC P KD ++VL+ G G ++E++++A
Sbjct: 300 PGRTLVKHLADYFG-SRCLFTTLPGG-----CKDISDVLVAYGSGVVREIIDSARPRHTA 353
Query: 256 GLFNFRDYFDEIDAYYHRTSGD-EFGISTGWRALNE--LYNVLPGELTIVTGVPNSGKSE 312
+ + DE+ + G+ + G G+ L + + G L IVTG PNSGK++
Sbjct: 354 DIITVGERTDEV---LNVLRGEYDHGYDVGYGPLTDQVFHPTDQGGLIIVTGKPNSGKTD 410
Query: 313 WIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPFFEANYGGSAERMTV 368
+++ L C++ G S E NK H +L+ + + T
Sbjct: 411 FLNDLTCHLMAKTGRYVCFLSFEVPDKNKHIAHLIRLMLGKVNMTAY-----------TR 459
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
E+ + ++L+ + S P+ +++ A+ ++ L+IDPY ++ +
Sbjct: 460 EQLQPIVSFLNAHMVHLDLHEIS-PTPTNIIERAERVKRAVPLKYLIIDPYLFMEMESGR 518
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFIN 484
TET+ + MLT ++ + + + V VAHPR L G E ++Y ISGSA++ N
Sbjct: 519 YNTETQAIKAMLTQMQAWGRSNGIWVIIVAHPRSLKKQSGKDELEEIDMYTISGSANWAN 578
Query: 485 KCDNGIVIHRNRDPE 499
D I R P+
Sbjct: 579 LADFIFSISRINQPD 593
>gi|218130758|ref|ZP_03459562.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
gi|217987102|gb|EEC53433.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697]
Length = 659
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 125/510 (24%), Positives = 213/510 (41%), Gaps = 76/510 (14%)
Query: 32 MKTIREITEDSLELEPLGNELRAYFAERLISAET-------LRRNRVMQKRHGHEV---- 80
+ I+ +T++ +P R Y A++ IS +T +R + G +
Sbjct: 118 LARIKPLTDEPETADPDQLAARRYLADQGISLKTAVSAHLGCLTHRCFGGKDGKDEKNAA 177
Query: 81 -----VIAFPYWRNGKLVNCKYRDFN------KKFWQEKD--TEKVFYGLDDI------- 120
IA+ + NG+ VN KYR + K W + T Y +D I
Sbjct: 178 GTMYHCIAYVNYVNGQPVNVKYRSCDPSSSGYTKCWSQDSPTTPCPPYNIDCINPLRISE 237
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN---VPSEEQDTKYQYLWNC 177
E + +I+ EG D L++ EAG+ +SVP+GA S + K VP
Sbjct: 238 ESVARLIVTEGGRDVLTLYEAGYPYVISVPNGAASDLRKSFEAFVP-------------- 283
Query: 178 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 237
+L Q +++ D D PG+ L + LA G RC P KD ++VL+
Sbjct: 284 --WLDQVRELVICGDCDLPGRTLVKHLADYFG-SRCLFTTLPGG-----CKDISDVLVAY 335
Query: 238 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 297
G G ++E++++A + + DE+ + + G + G
Sbjct: 336 GSGVVREIIDSARPRHTADIITVGERTDEVLNVLRGEYDHGYDVGYGPLTDQVFHPTDQG 395
Query: 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKP 353
L IVTG PNSGK+++++ L C++ G S E NK H +L+ +
Sbjct: 396 GLIIVTGKPNSGKTDFLNDLTCHLMAKTGRYVCFLSFEVPDKNKHIAHLIRLMLGKVNMT 455
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
+ T E+ + ++L+ + S P+ +++ A+ ++
Sbjct: 456 AY-----------TREQLQPIVSFLNAHMVHLDLHEIS-PTPTNIIERAERVKRAVPLKY 503
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----E 469
L+IDPY ++ + TET+ + MLT ++ + + + V VAHPR L G E
Sbjct: 504 LIIDPYLFMEMESGRYNTETQAIKAMLTQMQAWGRSNGIWVIIVAHPRSLKKQSGKDELE 563
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
++Y ISGSA++ N D I R P+
Sbjct: 564 EIDMYTISGSANWANLADFIFSISRINQPD 593
>gi|218891257|ref|YP_002440123.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
gi|218771482|emb|CAW27249.1| hypothetical protein PLES_25231 [Pseudomonas aeruginosa LESB58]
Length = 609
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 194/459 (42%), Gaps = 51/459 (11%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 108
AY A R + ET+ ++ +K G ++V FP+ R+G L++ K + KK + K
Sbjct: 125 AYLAGRGLKPETIAAFKIGEK--GRDIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 109 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
D+E +G I EG ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
L + I LA D D G+ EEL +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDNDEAGKQATEELIKRLGRERCRILDLGCKD----F 283
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAETFADDVCAEFFERNPVVMGMATPWEK 342
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SHDTIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ +++ N + EF G+ W+ N ++D + A
Sbjct: 398 RMVRQA-AGLNLPSRGYIHAILEFLGGRLWIYNQMGSANTAE--------MIDTFRYAAR 448
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 465
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADD 502
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
P L D+ G A + DN I + RN+ E D
Sbjct: 503 ETKLPGKL-DVRGGAILTDLADNVITVWRNKKKEVAMKD 540
>gi|451942529|ref|YP_007463166.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
gi|451901916|gb|AGF76378.1| phage related protein [Bartonella vinsonii subsp. berkhoffii str.
Winnie]
Length = 637
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 207/478 (43%), Gaps = 73/478 (15%)
Query: 50 NELRAYFA-ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 107
N ++ Y ER I E L+R R+ ++ G +++ FP+++ +G L K R + +
Sbjct: 120 NLVKTYLTKERCIPLEILKRYRIEEE--GEKII--FPFYKPDGTLALVKER-LAQAGAKP 174
Query: 108 KDTE----------KVFYGLDDIEGESD--------------IIIVEGEMDKLSMEEAGF 143
K T + F+ D ++ I+I EGE+D LS+ G+
Sbjct: 175 KPTAAHCEPILFGWQAFFSTDHTPTATNHTPLTQALSSTKRTIVITEGEIDALSLAAYGY 234
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 203
VSVP G S K+ ++ N +L+ I LATD D PG+ A E
Sbjct: 235 -PAVSVPFGGGSG------------GKHNWIENEFDHLESFETIFLATDMDKPGEEAARE 281
Query: 204 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRD 262
+A R+GR RC+RVR P+ KDAN+ L + +K +A+ + GL + D
Sbjct: 282 IANRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKAAFSSAKNFAPEGLHHASD 334
Query: 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-I 321
Y D+I + T G + + LN P ELT+ +G +GKS+ + I + I
Sbjct: 335 YKDKIIGLFWPTPEQHLGYTVPYSKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWI 394
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
++ + + L S+E K + R+L ++ G E+ T E E+ +L +
Sbjct: 395 SQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGIEQPTREMIERILHFLDD- 440
Query: 382 FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441
LI E+ S+ +LD+ R+G +ID L + + Q +
Sbjct: 441 -GLILYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG----ICSDDYAGQEQAVY 495
Query: 442 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ +A +A H+ VAH R+ + P DI G++ N I I RNR E
Sbjct: 496 KMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 552
>gi|423228471|ref|ZP_17214877.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|423243734|ref|ZP_17224810.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
gi|392636217|gb|EIY30101.1| hypothetical protein HMPREF1063_00697 [Bacteroides dorei
CL02T00C15]
gi|392644624|gb|EIY38362.1| hypothetical protein HMPREF1064_01016 [Bacteroides dorei
CL02T12C06]
Length = 635
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 127/479 (26%), Positives = 208/479 (43%), Gaps = 68/479 (14%)
Query: 82 IAFPYWRNGKLVNCKYRDFN---------------KKFWQEKD--TEKVFYGLDDI---- 120
IA+ + +G+ VN KYR + KFW + T Y +D I
Sbjct: 174 IAYVNYVDGRPVNAKYRSCSPIQSPKPEEGQPLTYSKFWSQDSPTTPCAPYNIDCINPLL 233
Query: 121 ---EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK---KNVPSEEQDTKYQYL 174
E +IIVEG D L++ EAG+ + +SVP GA S ++K +P
Sbjct: 234 VEEEIIPRLIIVEGGKDALTLMEAGYRHVISVPSGAASDLAKCFEAFIP----------- 282
Query: 175 WNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVL 234
+L Q I++ D D PG+ L + L+ G RC P KD +V+
Sbjct: 283 -----WLDQVQDIVICGDSDLPGRILVKHLSDYFG-ARCLFTILPGG-----CKDIGDVM 331
Query: 235 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE--LY 292
G ++ V+++A + +E+ H + G S G+ L + +
Sbjct: 332 KLYGTEVVRNVIDDACACQTTDIITVEQRREEVINVLHGKY--DHGYSVGYGPLTDRVFH 389
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
G L I+TG+PNSGK+++++ L I +FV C + +V + +KHI
Sbjct: 390 PTDIGGLIIMTGMPNSGKTDFLNDLTSRIMRDT-ERFV-CYLSFEVPDK-----DKHIAH 442
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
+ T E+ +L NT + ++ P+ +L A RH ++
Sbjct: 443 LVHLLLGKANTTAYTDEQLTPYIDFL-NTHMIHLDMHEVPPTPGNILHRADLIRRRHPLK 501
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG---- 468
LVIDPY ++ Q ++TET+ + MLT + + + + V VAHPR L G
Sbjct: 502 YLVIDPYLFVEAQSGKNETETQSIKSMLTRFQSWGRDNHIWVIIVAHPRSLKKIDGKNEM 561
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
E N+Y ISGSA++ N D + I R +P+ ++ V KVR++ + G + +
Sbjct: 562 EDINMYTISGSANWANLADFILSITRINEPDRA---FTRLDVLKVRDQELCRTGTVYYT 617
>gi|167763642|ref|ZP_02435769.1| hypothetical protein BACSTE_02017 [Bacteroides stercoris ATCC
43183]
gi|167698936|gb|EDS15515.1| toprim domain protein [Bacteroides stercoris ATCC 43183]
Length = 659
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 191/439 (43%), Gaps = 50/439 (11%)
Query: 82 IAFPYWRNGKLVNCKYRDFN------KKFWQEKDTEKVF---YGLDDI-------EGESD 125
IA+ + NG+ VN KYR + K W + D+ + Y +D I E
Sbjct: 187 IAYVNYINGQPVNVKYRSCDATASGYTKCWSQ-DSPTIPCPPYNIDCINPLLIAEENIPR 245
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
+I+ EGE D L++ EAG+ +SVP+GA S +SK + +L +
Sbjct: 246 LIVTEGERDVLTLREAGYPYVISVPNGAASDLSKG-------------FEAFRPWLDRVQ 292
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 245
+++ D D PG+ L + LA G RC P KD ++VL+ G ++E+
Sbjct: 293 ELVICGDSDLPGRTLVKHLADYFG-TRCLFTVLPGG-----CKDISDVLVAYGADVVREI 346
Query: 246 VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGV 305
+ +A + + + DEI + + + G + G L I TG
Sbjct: 347 IGSACPHRTSDIITVSERADEIMNVLNGNYDHGYDVGYGPLTDRVFHPTDQGGLIIATGK 406
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVR-EHARKLLEKHIKKPFFEANYGGSAE 364
PNSGK+++++ L C + G S E + +H L+ + K A
Sbjct: 407 PNSGKTDFLNDLTCRLMAKTGRNVCYLSFEVPDKNKHMANLIRLMLGKVNTAA------- 459
Query: 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424
T E+ + ++L + S P+ +++ A+ ++ L+IDPY ++
Sbjct: 460 -YTREQLQPIVSFLDGHMVHLDLHEVS-PTPANIIERAERVKRAMPLKYLIIDPYLFMEM 517
Query: 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSA 480
+ TET+ + MLT ++ + +++ V VAHPR L G E ++Y ISGSA
Sbjct: 518 ETGRYNTETQAIKGMLTQMQAWGRNNGVWVIIVAHPRSLKKLNGKNELEEIDMYTISGSA 577
Query: 481 HFINKCDNGIVIHRNRDPE 499
++ N D I R +P+
Sbjct: 578 NWANLADFIFSISRIEEPD 596
>gi|334124584|ref|ZP_08498585.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
gi|333388417|gb|EGK59595.1| gp61 family protein [Enterobacter hormaechei ATCC 49162]
Length = 623
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 118/458 (25%), Positives = 197/458 (43%), Gaps = 63/458 (13%)
Query: 55 YFAERLISAETLRRNRVMQK-----RHGHEV-VIAFPYWRNGKLVNCKY----RDFNKKF 104
Y A R I+ ET R +V EV +AFPY RNG+L+ K R KK
Sbjct: 122 YLASRGITRETADRFKVTDAVVWYHDESREVPAVAFPYIRNGELLQVKRIGTERPNGKKL 181
Query: 105 -WQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
E D E +G ++ + ++++ EGE+D ++ + G+ + +SVP G ++ +
Sbjct: 182 IMAEADCEPCLFGWQALDKNTRLVVLCEGEIDCMTFTQLGY-DALSVPFGGGKGAKQQWI 240
Query: 163 PSEEQD-TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
E + ++Q +W C D D G+ A+E+ARR+G RC V P
Sbjct: 241 EYEYHNLDRFQEIWLC-------------LDNDNVGREAAKEIARRLGEHRCRMVELPH- 286
Query: 222 NDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDEF 279
KD N+ LM + ++ E +E A+ + L + D E I+A+ HR +G
Sbjct: 287 ------KDINDCLMNGMDSDSILEYMERAKFFDPDELCSAGDLLQETIEAFEHRDTG--- 337
Query: 280 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
++ W +LN + GELT+V GV GK+E + + + G + + S+E K
Sbjct: 338 LFTSPWASLNNNFKFRAGELTLVNGVNGHGKTELVGHIAIDAMSQ-GVRTCIASLELKPG 396
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
+ +L + I S +R EE W S+ + + + +L
Sbjct: 397 KMLARLTRQTI--------CTSSPKR---EEIIMTNEWFSDRLWVFKLTGTA--KADRLL 443
Query: 400 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFV 457
++ A R+G+ VID + E +Y Q + + F H CHV V
Sbjct: 444 EIFAYARRRYGIELFVIDNLAK------CGLDEEDYTGQKDFIDTLCDFKNEHNCHVLLV 497
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
H R+ ++ P D+ G+ + DN + + RN
Sbjct: 498 THARKTND--SAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|386065838|ref|YP_005981142.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
gi|348034397|dbj|BAK89757.1| hypothetical protein NCGM2_2906 [Pseudomonas aeruginosa NCGM2.S1]
Length = 609
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 119/459 (25%), Positives = 194/459 (42%), Gaps = 51/459 (11%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 108
AY A R + ET+ ++ +K G ++V FP+ R+G L++ K + KK + K
Sbjct: 125 AYLAGRGLKPETIAAFKIGEK--GRDIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 109 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
D+E +G I EG ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
L + I LA D D G+ EEL +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDNDEAGKQATEELIKRLGRERCRILDLGCKD----F 283
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYTRYD-IDDCYAKAKTLDPEKLVGAETFADDVCAEFFERNPVVMGMATPWEK 342
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SHDTIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ +++ N + EF G+ W+ N ++D + A
Sbjct: 398 RMVRQA-AGLNLPSRGYIHAILEFLGGRLWIYNQMGSANTAE--------MIDTFRYAAR 448
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 465
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADD 502
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
P L D+ G A + DN I + RN+ E D
Sbjct: 503 ETKLPGKL-DVRGGAILTDLADNVITVWRNKKKEVAMKD 540
>gi|212694044|ref|ZP_03302172.1| hypothetical protein BACDOR_03570 [Bacteroides dorei DSM 17855]
gi|345514899|ref|ZP_08794405.1| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
gi|212663576|gb|EEB24150.1| toprim domain protein [Bacteroides dorei DSM 17855]
gi|345455804|gb|EEO44743.2| DNA primase/helicase [Bacteroides dorei 5_1_36/D4]
Length = 668
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 122/440 (27%), Positives = 194/440 (44%), Gaps = 47/440 (10%)
Query: 103 KFWQEKDTEK--VFYGLDDI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGA 153
KFW + K Y +D I E +IIVEGE D L + EAG+ + +SVP GA
Sbjct: 240 KFWSQDSPTKPCAPYNIDCINPLLVEEETIPRLIIVEGEKDALVLMEAGYRHVISVPSGA 299
Query: 154 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 213
S ++K S E T + L Q I++ D D PG+ L + L+ G RC
Sbjct: 300 ASDLAK----SFEAFTSW---------LDQVQDIVICGDTDLPGRTLVKHLSDYFG-ARC 345
Query: 214 WRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 273
P KD +V+ G ++ V+E+A + +E+ H
Sbjct: 346 LFTTLPGG-----CKDIGDVMNLYGTEVVQSVIEDACACHTTDIITVEQRREEVMNVLHG 400
Query: 274 TSGDEFGISTGWRALNE--LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G S G+ L + + G L I+TG+PNSGK+++++ L I +FV
Sbjct: 401 KY--DHGYSVGYGPLTDRVFHPTDTGGLIIMTGMPNSGKTDFLNDLTSRIMRDT-ERFV- 456
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS 391
C + +V + +KHI + T E+ +L NT + ++
Sbjct: 457 CYLSFEVPDK-----DKHIAHLIHLLLGKANTTAYTDEQLTPYIDFL-NTHMIHLDMHEV 510
Query: 392 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 451
P+ +L A R ++ LVIDPY ++ Q +TET+ + MLT + + + +
Sbjct: 511 PPTPGNILHRADLVRRRQPLKYLVIDPYLFVEAQSGKGETETQSIKSMLTRFQSWGRENH 570
Query: 452 CHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
V VAHPR L G E N+Y ISGSA++ N D + I R +P+ +
Sbjct: 571 IWVIIVAHPRSLKKIDGKNAMEDINMYTISGSANWANLADFILSITRINEPDRA---FTR 627
Query: 508 VCVRKVRNKVVGTIGEAFLS 527
+ V KVR++ + G + +
Sbjct: 628 LDVLKVRDQELCRTGTVYYT 647
>gi|421161235|ref|ZP_15620196.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
gi|404540402|gb|EKA49812.1| hypothetical protein PABE173_3776 [Pseudomonas aeruginosa ATCC
25324]
Length = 609
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 118/459 (25%), Positives = 194/459 (42%), Gaps = 51/459 (11%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY-----RDFNKKFWQEK 108
AY A R + ET+ ++ +K G ++V FP+ R+G L++ K + KK + K
Sbjct: 125 AYLAGRGLKPETIAAFKIGEK--GRDIV--FPFLRDGTLIHWKTLCIDRENGKKKIFASK 180
Query: 109 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
D+E +G I EG ++ I EGE+D ++ + G +SVP G + + E
Sbjct: 181 DSEPCLFGWQAIPEGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKGEKQAWIEHEYS 239
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
L + I LA D D G+ EEL +R+GRERC + K+ F
Sbjct: 240 ------------RLSRFDVIYLAMDNDEAGKQATEELIKRLGRERCRILDLGCKD----F 283
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAETFADDVCAEFFERNPVVMGMATPWEK 342
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SHDTIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ +++ N + +F G+ W+ N ++D + A
Sbjct: 398 RMVRQA-AGLNLPSRGYIHAILDFLGGRLWIYNQMGSANTAE--------MIDTFRYAAR 448
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 465
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMEAIVGFAHEMGVHVHLVAHPRKADD 502
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
P L D+ G A + DN I + RN+ E D
Sbjct: 503 ETKLPGKL-DVRGGAILTDLADNVITVWRNKKKEVAMKD 540
>gi|269122498|ref|YP_003310675.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
gi|268616376|gb|ACZ10744.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386]
Length = 607
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 134/535 (25%), Positives = 232/535 (43%), Gaps = 89/535 (16%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKF----SKMKTIREITEDSLELEPLG-------- 49
CF CG KG+ L+ + +KK S+++ +I + +G
Sbjct: 47 CFSGSCGEKGTIETLMKHLGINQKVKKKPVEKSEIRNTEKIELNRENYSSIGVLKENKII 106
Query: 50 NELRAYFAE-RLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK 108
++ +A F E R IS ET V +R + + F Y +++ KYRD NKK ++
Sbjct: 107 SKKQAEFLENRGISWETAAEMDVWVRRS--DGWLTFIYRNKKRVLAVKYRDINKKDFRLT 164
Query: 109 DTEKV--FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLN-CVSVPDGAPSSVSKKNVPSE 165
+E + + + + GES +II EGEMD L+ E G + VSVP+G +
Sbjct: 165 KSEDINPLFNIHRVTGES-VIICEGEMDVLACAEVGMKDKAVSVPNGTNNL--------- 214
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 225
+Y W+ +L+ IILA D D G+ +E+ +R+ +C + D+
Sbjct: 215 ---GWIEYNWD---FLESKKEIILAFDNDTAGEKAIKEVLKRLDITKCRYL------DMK 262
Query: 226 HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KD N++L+ LG L ++ N + I GL +D +E +G I
Sbjct: 263 GEKDLNDILINLGKVELLNILNNPLEFEIEGL---QDITNE-----KMDTGSTEAIFFEM 314
Query: 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN-INE------HAG---------WK 328
+L++ + GELTIV+G P +GKS ++ +IC+ +N+ ++G W
Sbjct: 315 ESLDKQFGGCRFGELTIVSGQPGAGKSTILNQIICDFVNQDEKVFYYSGEFPKAKAKRWL 374
Query: 329 FVLCSMENKVRE----HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
+ + + + + E H R+ K++ KP E Q W N +
Sbjct: 375 YTVFAGADSLTEEYDKHKRR--NKYVLKPGIE---------------RQIDNWAKNKIFI 417
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+ + + + K +HG+R +D + V+ + E LT +
Sbjct: 418 Y--DKGTEAKQNELFTIMKYGYKKHGIRLFFLDNLMTIGLD-EVNDDKYENQKNFLTELH 474
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
FA + HV+ VAHP++ N + + YDI+GS++ N DN + + R + E
Sbjct: 475 DFAIEYNVHVFLVAHPKKTENKKIQDLSFYDIAGSSNIPNLADNILFMKRLNEKE 529
>gi|319406226|emb|CBI79863.1| hypothetical protein BAR15_180096 [Bartonella sp. AR 15-3]
Length = 655
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 119/454 (26%), Positives = 199/454 (43%), Gaps = 56/454 (12%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYR---DFNKKFWQEKDTEKV 113
ER I E L+R R+ ++ G++++ FP+++ +G L K R D E +
Sbjct: 129 ERRIPLEILQRYRIGEE--GNKII--FPFYKPDGTLALVKERLAEDGATAKPTASQCEPI 184
Query: 114 FYG------LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
+G D + ++I EGE+D LS+ G+ VSVP G +
Sbjct: 185 LFGWQALSFKDCASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG------------GK 231
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
K ++ N +L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 232 GGKQNWIENEFDHLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPG------- 284
Query: 228 KDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 286
KDAN L + + E A+ + GL + DY +++ ++ + G + +
Sbjct: 285 KDANACLQAGIDASVIHEAFLQAQSFTPKGLRHVLDYKEQVVNLFYPPAKQHLGYTVPYS 344
Query: 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKL 345
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+L
Sbjct: 345 KLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRL 402
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 403 TKQ-----------TGGTDQPTKEMIERVLRFLDT--GLILYEHVGKSSVDALLDIFDYC 449
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
++G +ID L +S + Q + + +A +A H+ VAH R+ +
Sbjct: 450 RAKYGCDQFIIDSLMRLG----ISSDDYAKQEQAVYRIVDWAVLNAVHIHLVAHTRK-SS 504
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ P+ DI G++ N I I RNR E
Sbjct: 505 LEKDVPSTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|395783865|ref|ZP_10463713.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
gi|395425133|gb|EJF91303.1| hypothetical protein ME3_00369 [Bartonella melophagi K-2C]
Length = 645
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/456 (25%), Positives = 198/456 (43%), Gaps = 48/456 (10%)
Query: 50 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR---DFNKKFW 105
+E++ Y +R I + L+R R+ + G++++ F Y +G+L K R D K
Sbjct: 120 HEVKNYLHTKRHIPLDILKRYRIQED--GNQIIFPF-YKPDGRLALVKVRAAQDGAKAKP 176
Query: 106 QEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
E + +G + + ++I EGE+D LS+ G+ +SVP G
Sbjct: 177 TASHCEPILFGWQALCPTQRTLVITEGEIDALSLAAYGY-PALSVPFGG----------- 224
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
+ K+ ++ N +L+ +I LATD D PG+ A E+A R+GR RC+RV P K+
Sbjct: 225 -GKGGKHAWIENEFDHLEPFEKIFLATDMDKPGEEAALEIAHRLGRHRCYRVHLPCKDAN 283
Query: 225 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 284
D K E +K A+ + GL DY +++ + T G +
Sbjct: 284 DCLKAGVET------STIKAAFSKAQSFAPEGLKRASDYHNQVIELFWPTPKQHLGYTLP 337
Query: 285 WRALNELYNVLPGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHAR 343
+ LN P ELT+ +G +GKS+ + D ++ I + + + L S+E K + R
Sbjct: 338 YPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIVHWIAQKS--RLCLASLEMKGEQSLR 395
Query: 344 KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK 403
+L+ + G + T EQ +L + LI E+ I+ +LD+
Sbjct: 396 RLIRQ-----------TGGEHQPTKTMIEQILHFLDD--GLILYEHVGKSGIQTLLDVFD 442
Query: 404 AAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 463
++G +ID L ++ + Q + + +A +A HV VAH R+
Sbjct: 443 YCRAKYGCDQFIIDSLMRLG----IAADDYTGQEQAVYKIVDWAILNAVHVHLVAHARK- 497
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ P DI G++ N I I RNR E
Sbjct: 498 SGIEKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 533
>gi|423713555|ref|ZP_17687815.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395422271|gb|EJF88476.1| hypothetical protein ME1_00561 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 686
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 169/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 266 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 312
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 313 TIFLATDMDKPGEEAAREIANRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKA 365
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL + DY D+I + T G + + LN P ELT+ +G
Sbjct: 366 AFSSAKSFAPEGLHHASDYRDKIIGLFWPTPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 425
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 426 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGI 472
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ ++L + L+ E+ S+ +LD+ R+G +ID L
Sbjct: 473 EQPTREMIERILSFLDD--GLLLYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG 530
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 531 ----ICSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 585
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 586 ANAFNIITIWRNRSLE 601
>gi|54298060|ref|YP_124429.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
gi|53751845|emb|CAH13269.1| hypothetical protein lpp2117 [Legionella pneumophila str. Paris]
Length = 610
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 114/486 (23%), Positives = 201/486 (41%), Gaps = 54/486 (11%)
Query: 25 SLKKFSKMKTIREITEDSLELEPL---GNELRAYFA-ERLISAETLRRNRVMQKRHGHEV 80
S+ KF K ++ + L PL + + +Y ER ++AET+ ++ +
Sbjct: 95 SIPKFEGHKPLKFVRPVLKNLSPLLQKTSPIMSYLINERRLTAETIEAYKIGSQNSK--- 151
Query: 81 VIAFPYWRNGKLVNCKYRDF-----NKKFWQEKDTEKVFYGLDDIEGES-DIIIVEGEMD 134
I FPYWR+G+L+ K D K+ E + E +G I + + I EGE+D
Sbjct: 152 -IIFPYWRDGELIFVKQLDLERVNGKKQIAVEPNCEPCLFGWHLIPANARKVTICEGEID 210
Query: 135 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 194
+S+ + GF +SVP G +K + E + L I L D D
Sbjct: 211 AMSLYQYGF-PALSVPFGGGGGNKQKWLEYEFER------------LAVFDEIYLCFDND 257
Query: 195 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYP 253
G EL R+GR RC V+ P KDANE L + + + A +
Sbjct: 258 KEGDIATLELVERLGRHRCRIVKLP-------CKDANECLQAKITQEVIAQCFHTASMLD 310
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 313
L + +++ ++ G G + W P EL++ TG+ GKS++
Sbjct: 311 PEELKPAHQFVEQVIDVFYPPVGSHQGYNPPWEKTKGKILFRPTELSLWTGINGHGKSQF 370
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+ ++ + + G + + S+E ++LL + ++ G+ E ++E
Sbjct: 371 LGQVVLHAMKE-GARVCIASLEI----MPKRLLMRLTRQ-------AGALESPSIEYIHA 418
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
+W + + ++ K +LD+ A R+G+ VID + +LD + +
Sbjct: 419 IHSWYEDKLWIFDLVGNA--KSKRILDVFLYARQRYGINVFVIDSFMKLDIAEDDYKAQK 476
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
++ Q+ F H CH+ + HPR+ + +PP D G+ + DN I
Sbjct: 477 NFMEQLCD----FKNQHNCHIHIIVHPRKGTD-ESQPPGKLDNKGTGAISDLADNCFTIW 531
Query: 494 RNRDPE 499
RN+ E
Sbjct: 532 RNKHRE 537
>gi|189466689|ref|ZP_03015474.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
gi|189434953|gb|EDV03938.1| hypothetical protein BACINT_03064 [Bacteroides intestinalis DSM
17393]
Length = 673
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 187/451 (41%), Gaps = 69/451 (15%)
Query: 82 IAFPYWRNGKLVNCKYRDFN---------------------KKFWQEKD--TEKVFYGLD 118
IA+ + NG+ VN KYR + KFW + T Y +D
Sbjct: 186 IAYVNYVNGQPVNAKYRSCDPSTIKTTSDGNAVGTENPVCYTKFWSQDSPTTPCAPYNID 245
Query: 119 DI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
I E +I+ EGE D L++ E G+ +SVP+GA S ++K E
Sbjct: 246 CINPLRVSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLAKTFEAFEP----- 300
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
+L Q I++ D D PG+ L + L G R P KD +
Sbjct: 301 --------WLDQVRDIVICGDRDLPGRTLIKHLTDYFG-ARSLLTTLPGD-----CKDIS 346
Query: 232 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 291
+VL G ++E++E+AE + + +EI H + + G
Sbjct: 347 DVLATYGSNVVREIIESAEAQHTSDIITVSERTNEILDALHGEYDHGYDVGYGPLTDRIF 406
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLE 347
+ G L I TG PNSGK+++++ L C + G S E NK H +L+
Sbjct: 407 HPTDQGGLIITTGKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHIAHLIQLML 466
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ ANY T E+ + ++L NT + ++ P+ ++ A
Sbjct: 467 GKVNT----ANY-------TREQLQPIVSFL-NTHMVHLDLHEVSPTPTNIIARADRVRR 514
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
++ L+IDPY ++ + TET+ + MLT ++ + +++ V VAHPR L
Sbjct: 515 TAPLKYLIIDPYLFMEMETGRYSTETQAIKAMLTQMQAWGRNNNIWVIIVAHPRSLKKQN 574
Query: 468 G----EPPNLYDISGSAHFINKCDNGIVIHR 494
G E ++Y ISGSA++ N D I R
Sbjct: 575 GKNELEDIDMYTISGSANWANLADFIFSISR 605
>gi|427386673|ref|ZP_18882870.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
gi|425726163|gb|EKU89029.1| hypothetical protein HMPREF9447_03903 [Bacteroides oleiciplenus YIT
12058]
Length = 677
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 117/451 (25%), Positives = 188/451 (41%), Gaps = 69/451 (15%)
Query: 82 IAFPYWRNGKLVNCKYRDFN---------------------KKFWQEKD--TEKVFYGLD 118
IA+ + NG+ VN KYR + KFW + T Y +D
Sbjct: 185 IAYVNYVNGQPVNAKYRSCDPSTVKTTSDGNAIGTENPVCYTKFWSQDSPTTPCAPYNID 244
Query: 119 DI-------EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
I E +I+ EGE D L++ E G+ +SVP+GA S ++K E
Sbjct: 245 CINPLRVSEEHIPRLIVTEGEKDVLTLLETGYPYAISVPNGAASDLAKTFEAFEP----- 299
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
+L Q I++ D D PG+ L + L G R P KD +
Sbjct: 300 --------WLDQVRDIVICGDRDLPGRTLIKHLTDYFG-ARGLLTTLPGD-----CKDIS 345
Query: 232 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 291
+VL G ++E++E+AE + + +EI H + + G +
Sbjct: 346 DVLATYGSNVVREIIESAEAQHTSDIITVSERTNEILDALHGEYDHGYDVGYGPLTDHIF 405
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLE 347
+ G L I TG PNSGK+++++ L C + G S E NK H +L+
Sbjct: 406 HPTDQGGLIITTGKPNSGKTDFLNDLTCRLMAKTGRYVCYLSFEVPDKNKHIAHLIQLML 465
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ ANY T E+ + ++L NT + ++ P+ ++ A
Sbjct: 466 GKVNT----ANY-------TREQLQPIVSFL-NTHMVHLDLHEVSPTPTNIIARADRVRR 513
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
++ L+IDPY ++ + TET+ + MLT ++ + +++ V VAHPR L
Sbjct: 514 TAPLKYLIIDPYLFMEMETGRYSTETQAIKAMLTQMQAWGRNNNIWVIIVAHPRSLKKQN 573
Query: 468 G----EPPNLYDISGSAHFINKCDNGIVIHR 494
G E ++Y ISGSA++ N D I R
Sbjct: 574 GKNELEDIDMYTISGSANWANLADFIFSISR 604
>gi|395792906|ref|ZP_10472327.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432034|gb|EJF98026.1| hypothetical protein MEI_00948 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 672
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/404 (27%), Positives = 179/404 (44%), Gaps = 47/404 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 252 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 298
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RV P+ KDAN+ L + +K
Sbjct: 299 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVCLPR-------KDANDCLTSGIDAATIKA 351
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL + DY D+I + T G + + LN P ELT+ +G
Sbjct: 352 AFSSAKSFAPEGLHHASDYKDKIIGLFWPTPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 411
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 412 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGV 458
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ ++L + L+ E+ S+ +LD+ R+G +ID L
Sbjct: 459 EQPTREMIERILSFLDD--GLLLYEHVGKSSVDRLLDVFDYCRARYGCDQFIIDSLMRLG 516
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 517 ----ICSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 571
Query: 484 NKCDNGIVIHRNRDPE----AGPIDRVQVCVRKVRNKVVGTIGE 523
N I I RNR E A P + +RK R V+ I +
Sbjct: 572 ANAFNIITIWRNRSLEDKIFAAPRQEEKAELRK-RPSVIMNIAK 614
>gi|262044714|ref|ZP_06017765.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037936|gb|EEW39156.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 117/460 (25%), Positives = 195/460 (42%), Gaps = 57/460 (12%)
Query: 50 NELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKY----RD 99
N Y A R I+ ET + RV + +AFPY RNG+L+ K R
Sbjct: 117 NHCYDYLASRGITRETADQFRVSDAVVWYHDENREVAAVAFPYIRNGELLQVKRIGTERP 176
Query: 100 FNKKF-WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
KK E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 177 GGKKLIMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLG-ISALSVPFGGGKG- 234
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V
Sbjct: 235 ------AKQQWIEYEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLVE 283
Query: 218 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTS 275
P KD N+ LM + + + + A+ + L + D E IDA+ HR
Sbjct: 284 LP-------HKDINDCLMAGMSEDDVWQCLGTAKFFDPDELCSAGDLLQETIDAFEHRDV 336
Query: 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
G ++ W +LN + GELT+V GV GK+E + + + G + + S+E
Sbjct: 337 G---LFTSPWASLNSNFKFRAGELTLVNGVNGHGKTELVGHIAVDAMSQ-GVRVCIASLE 392
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
K + +L + I + E AE + E+ + W+ F L
Sbjct: 393 LKPGKMLARLTRQTICRKSPE-----RAEIIMTNEWFSDRLWV---FKLT-----GTAKA 439
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+L++ A R+G+ VID + + E++ + F H CHV
Sbjct: 440 GRLLEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCHVL 495
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
V H R+ + P D+ G+ + DN + + RN
Sbjct: 496 LVTHARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|395779241|ref|ZP_10459736.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
gi|395416083|gb|EJF82487.1| hypothetical protein MCU_01437, partial [Bartonella elizabethae
Re6043vi]
Length = 431
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 35 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 81
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDANE L + +K
Sbjct: 82 TIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANECLTAGIDAATIKA 134
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 135 AFTSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 194
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 195 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 241
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 242 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 299
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 300 ----IASDDYAGQEQAVYKMVDWAVLNTVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 354
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 355 ANAFNIITIWRNRSLE 370
>gi|423716067|ref|ZP_17690284.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
gi|395427387|gb|EJF93483.1| hypothetical protein MEE_01476, partial [Bartonella elizabethae
F9251]
Length = 450
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 54 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 100
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDANE L + +K
Sbjct: 101 TIFLATDMDQPGEEAAHEIANRLGRHRCYRVRLPR-------KDANECLTAGIDAATIKA 153
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 154 AFTSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 213
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 214 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 260
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 261 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 318
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 319 ----IASDDYAGQEQAVYKMVDWAVLNTVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 373
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 374 ANAFNIITIWRNRSLE 389
>gi|224540163|ref|ZP_03680702.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518197|gb|EEF87302.1| hypothetical protein BACCELL_05076 [Bacteroides cellulosilyticus
DSM 14838]
Length = 656
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 144/581 (24%), Positives = 243/581 (41%), Gaps = 89/581 (15%)
Query: 6 KCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAET 65
+ G S ++ + + + + FSK I+ +T+D + R Y A++ IS +T
Sbjct: 83 RTGKTTSEVPMIPEDYKKLTPEVFSK---IKPLTDDPETTDRDQLTARRYLADQGISLKT 139
Query: 66 LRRNRVMQKRH-------------GHEVVIAFPYWRNGKLVNCKYRDFN----------- 101
R+ H +A+ + NG+ VN KYR +
Sbjct: 140 AIEARIGCLTHRCFGKDEDSKNTGTMHHCVAYVNYLNGQPVNAKYRSCDPSTVKPTDERE 199
Query: 102 ----------KKFWQEKD--TEKVFYGLDDIE----GESDI---IIVEGEMDKLSMEEAG 142
KFW + T Y +D I E+ I II EGE D L++ EAG
Sbjct: 200 TTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEATIPRLIITEGEKDVLTLNEAG 259
Query: 143 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202
+ +SVP+GA S +SK E +++Q I++ D D PG+ L +
Sbjct: 260 YPYAISVPNGAASDLSKSFEAFEP-------------WMEQVRDIVICGDSDLPGRTLVK 306
Query: 203 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 262
L G RC P KD ++VL G + E++E A + +
Sbjct: 307 HLTDYFG-ARCLLTTLPGD-----CKDISDVLATYGIEVVCEIIEAARPQHTADIVTVSE 360
Query: 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 322
+ I H + + G + + G L I TGVPNSGK+++++ L C +
Sbjct: 361 RTNGILNVLHGEYDHGYDVGYGPLTDHVFHPTDQGGLIIETGVPNSGKTDFLNDLTCRLM 420
Query: 323 EHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
G S E ++ H L++ + K NY T E+ + ++L++
Sbjct: 421 AKTGRYVCYLSFEVPDKDKHIAHLVQLMLGK-MNTVNY-------TQEQLKPIVSFLNSH 472
Query: 382 FSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQM 439
+ S P+ + +A+A ++R ++ L+IDPY ++ + TET+ + M
Sbjct: 473 MVHLDLHEVS-PTPNNI--IARADMVRRTLPLKYLIIDPYLFMEVETNRYNTETQAIKAM 529
Query: 440 LTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR- 494
LT ++ + + + V VAHPR+L G E ++Y I+GSA++ N D I R
Sbjct: 530 LTQMQAWGRTNNIWVIIVAHPRKLTKLNGKNELEEIDMYTIAGSANWANLADFIFSISRI 589
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
NR + G R+ + KVR++ + G + L + G Y
Sbjct: 590 NR--QDGNYTRLDML--KVRDQDLCQTG-SVLYVRQACGRY 625
>gi|329963105|ref|ZP_08300885.1| conserved domain protein [Bacteroides fluxus YIT 12057]
gi|328529146|gb|EGF56076.1| conserved domain protein [Bacteroides fluxus YIT 12057]
Length = 656
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 110/436 (25%), Positives = 189/436 (43%), Gaps = 57/436 (13%)
Query: 82 IAFPYWRNGKLVNCKYRDFN-----------------KKFWQEKD--TEKVFYGLDDI-- 120
IA+ + NG+ VN KYR + KFW + T + +D +
Sbjct: 173 IAYVNYVNGQPVNVKYRSCDPTSTAKADSNDVQSVEYTKFWYQDSPTTPCAPFNIDCLNP 232
Query: 121 -----EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
E +II EG D L++ +AG+ +SVP+GA S +SK E
Sbjct: 233 LLVAEENIRKLIITEGGKDVLTISQAGYPFVISVPNGAASDLSKSFEAFEP--------- 283
Query: 176 NCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLM 235
+L+Q I++ D D PG+ L + L G RC P KD ++VL
Sbjct: 284 ----WLEQVQDIVICGDTDLPGRTLTKHLTDYFGN-RCLLTTLPGD-----CKDISDVLT 333
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
G + E++E+A+ + + DE+ + + + G + +
Sbjct: 334 KYGVEIVHEIIESAKPRHTADIITVNERTDEVLSVLRGEYDHGYSVGHGPLTDHIFHPDD 393
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
G L I TG PNSGK+++++ L C + G ++V C + +V + KHI +
Sbjct: 394 QGGLIIETGQPNSGKTDFLNDLTCRLMAKTG-RYV-CYLSFEVPDK-----NKHIAQLIH 446
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
+ T + + +L NT + ++ P+ + +LD A ++ L+
Sbjct: 447 LMLGKVNTTAYTQIQLQSIIDYL-NTHMVHLDLHEVSPTPEHILDRADIVRRTSPLKYLI 505
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPP 471
IDPY ++ + + TET+ + MLT ++ + + + V VAHPR+L G E
Sbjct: 506 IDPYLFMEVETGQNSTETQAIKNMLTQLQSWGRSNKIWVIIVAHPRKLQKLNGKNELEDI 565
Query: 472 NLYDISGSAHFINKCD 487
++Y I+GSA++ N D
Sbjct: 566 DMYTIAGSANWANLAD 581
>gi|240851150|ref|YP_002972553.1| phage related helicase [Bartonella grahamii as4aup]
gi|240268273|gb|ACS51861.1| phage related helicase [Bartonella grahamii as4aup]
Length = 627
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 231 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 277
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P KDAN+ L + +K
Sbjct: 278 TIFLATDMDQPGEEAAREIASRLGRHRCYRVRLPH-------KDANDCLTAGIDRATIKA 330
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 331 AFSSAQSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 390
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 391 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 437
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 438 EKPTKETIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 495
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A ++ H+ VAH R+ + P+ DI G++
Sbjct: 496 ----IASDDYAKQEQAVYKMVDWAVLNSVHIHLVAHARK-GGLDKDIPSTEDIKGASEIG 550
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 551 ANAFNIITIWRNRSLE 566
>gi|423224621|ref|ZP_17211089.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635061|gb|EIY28967.1| hypothetical protein HMPREF1062_03275 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 656
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 133/539 (24%), Positives = 225/539 (41%), Gaps = 83/539 (15%)
Query: 6 KCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAET 65
+ G S ++ + + + + FSK I+ +T+D + R Y A++ IS +T
Sbjct: 83 RTGKTTSEVPMIPEDYKKLTPEVFSK---IKPLTDDPETTDRDQLTARRYLADQGISLKT 139
Query: 66 LRRNRVMQKRH-------------GHEVVIAFPYWRNGKLVNCKYRDFN----------- 101
R+ H +A+ + NG+ VN KYR +
Sbjct: 140 AIEARIGCLTHRCFGKDEDSKNTGTMHHCVAYVNYLNGQPVNAKYRSCDPSTVKPTDERE 199
Query: 102 ----------KKFWQEKD--TEKVFYGLDDIE----GESDI---IIVEGEMDKLSMEEAG 142
KFW + T Y +D I E+ I II EGE D L++ EAG
Sbjct: 200 TTGMEKAAGYTKFWSQDSPTTPCPPYHIDCINPLKVSEATIPRLIITEGEKDVLTLNEAG 259
Query: 143 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202
+ +SVP+GA S +SK E +++Q I++ D D PG+ L +
Sbjct: 260 YPYAISVPNGAASDLSKSFEAFEP-------------WMEQVRDIVICGDSDLPGRTLIK 306
Query: 203 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 262
L+ G RC P KD ++VL G + E++E A + +
Sbjct: 307 HLSDYFG-ARCLLTTLPGD-----CKDISDVLATYGIEVVCEIIEAARPQHTADIVTVSE 360
Query: 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 322
+ I H + + G + + G L I TGVPNSGK+++++ L C +
Sbjct: 361 RTNGILNVLHGEYDHGYDVGYGPLTDHVFHPTDQGGLIIETGVPNSGKTDFLNDLTCRLM 420
Query: 323 EHAGWKFVLCSMENKVRE-HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
G S E ++ H L++ + K NY T E+ + ++L++
Sbjct: 421 AKTGRYVCYLSFEVPDKDKHIAHLVQLMLGK-MNTVNY-------TQEQLKPIVSFLNSH 472
Query: 382 FSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQM 439
+ S P+ + +A+A ++R ++ L+IDPY ++ + TET+ + M
Sbjct: 473 MVHLDLHEVS-PTPNNI--IARADMVRRTLPLKYLIIDPYLFMEVETNRYNTETQAIKAM 529
Query: 440 LTMVKRFAQHHACHVWFVAHPRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 494
LT ++ + + + V VAHPR+L G E ++Y I+GSA++ N D I R
Sbjct: 530 LTQMQAWGRTNNIWVIIVAHPRKLTKLNGKNELEEIDMYTIAGSANWANLADFIFSISR 588
>gi|313111265|ref|ZP_07797083.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
gi|310883585|gb|EFQ42179.1| hypothetical protein PA39016_003090035 [Pseudomonas aeruginosa
39016]
Length = 609
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 113/455 (24%), Positives = 190/455 (41%), Gaps = 51/455 (11%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-----KKFWQEK 108
AY R + ET+ ++ + G ++V FPY R+G L+ K + K+
Sbjct: 125 AYLVGRGLKPETIAEFKIGES--GRDIV--FPYLRDGALIFWKKLGVDRPNGKKRISASA 180
Query: 109 DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
D E +G I +G ++ I EGE+D ++ + G +SVP G
Sbjct: 181 DAEPCLFGWQAIPDGAREVTITEGEIDAMTAWQYG-RPALSVPFGGGKG----------- 228
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
K ++ + L + I LA D D PG+ EE+ +R+GRERC + K+ F
Sbjct: 229 -EKQAWIEHEYSRLSRFDVIYLAMDDDEPGKQATEEIIKRLGRERCRILDLGCKD----F 283
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+A + L Y + + A+ L + D++ A + + G++T W
Sbjct: 284 NEALDALFYT-RDDIDDCYAKAKTLDPEKLVGAESFVDDVCAEFFERNPAVMGMATPWEK 342
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
++ E+TI TG GKS+ ++ L + G KF + SME A++ L+
Sbjct: 343 SRDMIRFRDSEVTIWTGWSGHGKSQLLNYLAFH-GMRQGEKFCIASMEMP----AKRTLQ 397
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ +++ N + EF G+ W+ N +++ + A
Sbjct: 398 RMVRQA-AGLNQPSRGYIHAILEFLGGRLWIYNQMGSANTAE--------MIETFRYAAR 448
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHACHVWFVAHPRQLHN 465
R+GV+ V+D +L E +Y Q M + FA HV VAHPR+ +
Sbjct: 449 RYGVKQFVVDSLAKL------GMAEDDYNGQKQAMESIVGFAHEMGVHVHLVAHPRKADD 502
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 500
P L D+ G A + DN I + RN+ E+
Sbjct: 503 ESKMPGKL-DVRGGAILTDLADNVITVWRNKKKES 536
>gi|319409296|emb|CBI82940.1| hypothetical protein BARSC_190213 [Bartonella schoenbuchensis R1]
Length = 653
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 127/501 (25%), Positives = 213/501 (42%), Gaps = 60/501 (11%)
Query: 12 STSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLG------NELRAYF-AERLISAE 64
S S +D RS +L + R S L P+ +E++ Y +R I +
Sbjct: 80 SLSQALDEARSYLNLSRPKPFMAPRH----SYRLPPVPKGGEPRHEVKNYLHTKRHIPLD 135
Query: 65 TLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR---DFNKKFWQEKDTEKVFYGLDDI- 120
L+R R+ + G++++ F Y +G L K R + K E + +G +
Sbjct: 136 ILKRYRIQED--GNQIIFPF-YKPDGTLALVKARAAQEGAKAKPTASHCEPILFGWQALC 192
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
+ ++I EGE+D LS+ G+ +SVP G + K+ ++ N +
Sbjct: 193 PTQRTLVITEGEIDALSLAAYGY-PALSVPFGG------------GKGGKHAWIENEFDH 239
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGP 239
L+ +I LATD D PG+ A E+A R+GR RC+RV P KDAN+ L +
Sbjct: 240 LEPFEKIFLATDMDKPGEEAALEIAHRLGRHRCYRVHLP-------CKDANDCLKAGVKA 292
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGEL 299
+K A+ + GL DY +++ + T G + + LN P EL
Sbjct: 293 STIKAAFSKAQSFAPEGLRRASDYHNQVIELFWPTPKQHLGYTLPYPKLNGKLYFRPAEL 352
Query: 300 TIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358
T+ +G +GKS+ + D ++ I + + + L S+E K + R+L+ +
Sbjct: 353 TLWSGASGAGKSQLLSDCIVHWIAQKS--RLCLASLEMKGEQSLRRLIRQ---------- 400
Query: 359 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418
G + T EQ +L + LI E+ I+ +LD+ ++G +ID
Sbjct: 401 -TGGDNQPTKTMIEQILHFLDD--GLILYEHVGKSDIQTLLDVFDYCRAKYGCDQFIIDS 457
Query: 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISG 478
L ++ + Q + + +A +A HV VAH R+ + P DI G
Sbjct: 458 LMRLG----IAADDYTGQEQAVYKIVDWAILNAVHVHLVAHARK-SGIEKDIPGTEDIKG 512
Query: 479 SAHFINKCDNGIVIHRNRDPE 499
++ N I I RNR E
Sbjct: 513 ASEIGANAFNIITIWRNRSLE 533
>gi|410658448|ref|YP_006910819.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|410661435|ref|YP_006913806.1| DNA primase/helicase [Dehalobacter sp. CF]
gi|409020803|gb|AFV02834.1| DNA primase/helicase [Dehalobacter sp. DCA]
gi|409023791|gb|AFV05821.1| DNA primase/helicase [Dehalobacter sp. CF]
Length = 607
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 124/479 (25%), Positives = 209/479 (43%), Gaps = 61/479 (12%)
Query: 35 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVN 94
+RE+++ +++L A R I+ +TL RV + V F Y+++ L +
Sbjct: 108 MRELSKAAIDL----------MAVRKITKQTLDAWRVKESTWNGVNVYVFQYFQDNTLKH 157
Query: 95 CKYRDFNK---KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 151
YR+ + K EK+TE + +G+ +E ++I EG+ D +++ ++G+ N SVP
Sbjct: 158 VTYREIKQGGLKGGCEKNTEPILWGMWHVEDGKPLVITEGQPDAMAIWQSGYKNVASVPS 217
Query: 152 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 211
GA S ++ C +LK +IL D D G +A+ ++RR+
Sbjct: 218 GANS---------------LTWIDTCWDWLK-GREVILWADNDKAGINMADNISRRLDN- 260
Query: 212 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
K + KDANEVL GP + E++E+A GL + ++
Sbjct: 261 -------VKVVHAEDLKDANEVLYKYGPEKVLEIIESASKQIPNGLLDL--------SHV 305
Query: 272 HRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330
+E GI TG+ + + + GELTIV G GK+ +I +I + E F+
Sbjct: 306 EYKIANESGIETGFFEYDSHVEDWKEGELTIVFGRNGEGKTTFISQIIAHCLEKKVKTFL 365
Query: 331 LCS--MENKVREHARKLL----EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
E K+++ K + + H+++ +A Y E + E +Q K W L
Sbjct: 366 YSGEMSEFKIQDWLYKQIVGNKQAHMQET--QAKYRIKRE-IKPEIVKQIKQWHEGILYL 422
Query: 385 I-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
R E + +L A R+GV+ +ID N + + + + +
Sbjct: 423 FDRKEEKIAKDLDKFFELMALAAKRYGVKLFIID--NLMSKLEENADSLYSDQANFVQRC 480
Query: 444 KRFAQHHACHVWFVAHPRQLHNWV-GEPPNL--YDISGSAHFINKCDNGIVIHRNRDPE 499
K FA + HV VAHP + + + NL DISGS + NK DN I + R P+
Sbjct: 481 KDFAGNGRAHVVLVAHPNKEKCEIKKDEGNLTKTDISGSNNIPNKADNIIAVERVWSPD 539
>gi|300918426|ref|ZP_07135024.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300414401|gb|EFJ97711.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 623
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 116/457 (25%), Positives = 194/457 (42%), Gaps = 61/457 (13%)
Query: 55 YFAERLISAETLRRNRVMQK-----RHGHEV-VIAFPYWRNGKLVNCKY----RDFNKKF 104
Y + R I+ ET + RV E+ +AFPY RNG+L+ K R KK
Sbjct: 122 YLSSRGITRETADQFRVSDAVVWYHDENREIPAVAFPYLRNGELLQVKRIGTERPNGKKL 181
Query: 105 -WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 182 IMAEADCEPCLFGWQAMDAKARAVVLCEGEIDCMTYSQFG-ISALSVPFGGGKG------ 234
Query: 163 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 222
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V P K+
Sbjct: 235 -AKQQWIEYEY-----HNLDRFEEIWLSLDNDDVGREAAKEIARRLGEHRCRLVELPHKD 288
Query: 223 DVDHFKDA---NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDE 278
+ +E+ YLG A+ + L + D E +DA+ HR G
Sbjct: 289 INECLTSGMSEDEIWHYLG---------TAKFFDPDELCSAGDLLQETLDAFEHRDVG-- 337
Query: 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
S+ W +LN + GELT+V GV GK+E + + N G + + S+E K
Sbjct: 338 -LFSSPWDSLNSNFKFRAGELTLVNGVNGHGKTELVGHIAVNAMSQ-GVRVCIASLELK- 394
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 398
K+L + ++ N + MT E F + W+ + + +
Sbjct: 395 ---PGKMLARLTRQTICRKNPERTEIIMTNEWFSD-RLWVFKLTGTAKADR--------L 442
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
L++ A R+G+ VID + + E++ + F H CHV V
Sbjct: 443 LEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCHVLLVT 498
Query: 459 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
H R+ + P D+ G+ + DN + + RN
Sbjct: 499 HARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|422321729|ref|ZP_16402774.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
gi|317403363|gb|EFV83876.1| hypothetical protein HMPREF0005_02002 [Achromobacter xylosoxidans
C54]
Length = 605
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 121/493 (24%), Positives = 205/493 (41%), Gaps = 46/493 (9%)
Query: 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYR--DFNKKFWQE 107
+ +R + R ++ ET+ R+ ++ G +V FPY R+G+LVN K R D K Q
Sbjct: 133 SRVREWLMGRGLTEETITAFRIGEQERGAKVYAIFPYLRDGELVNTKSRNPDEKKDMLQA 192
Query: 108 KDTEKVFYGLDDIEGESDII-IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
E +G I+ + ++ I EGE+D ++ + G + +SV GA
Sbjct: 193 AGAEPCLFGWHLIDPNARMVAIFEGEIDAMTGHQVG-IPSLSVNAGA------------- 238
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
+Q++ + L+Q S I+L D D G E+A R+G ERC + K
Sbjct: 239 --GNHQWIESDWERLQQFSDIVLCYDNDDAGHKGVREVATRLGLERCRIATFGKA----- 291
Query: 227 FKDANEVLM-YLGPGA-LKEVVENAELYPIMGLFNFRDYFDEIDAYY--HRTSGDEFGIS 282
KDANE L Y G + ++ A L D+ A + + +S
Sbjct: 292 -KDANEYLTEYQASGEDFEHCIKQARGLDPDELQQLADFMPATQAMFWPAHDAPAYPQLS 350
Query: 283 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342
RA++ + LP +++ TG+ GKS + + + + +C ++ A
Sbjct: 351 FCGRAMD-WWEWLPARVSVWTGINGHGKSLMLSQALIPVMQS---DVPVCMFSGELTP-A 405
Query: 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 402
++L K + K + A V+ + QG+ W+ N + + +L++
Sbjct: 406 QQL--KRLAKQITGIDRPTPAYLSAVQNWLQGRMWIFNVVGIAGLDR--------LLEVF 455
Query: 403 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
A R+G VID LD + T + M +V FA HV VAHPR+
Sbjct: 456 AYAASRYGCGHFVIDSLMMLDVPEDGPGSMTAQKTAMRKIVS-FAHATQSHVHLVAHPRK 514
Query: 463 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 522
+ P L D++GS H N DN + + P D + ++++
Sbjct: 515 ASDETKAPGKL-DVAGSGHITNGADNVFSVWSAQKPPGEDTDTPDARLEVLKDRDDVGRR 573
Query: 523 EAFLSYNRVTGEY 535
+ L +NR TG+Y
Sbjct: 574 KISLYFNRSTGQY 586
>gi|319899348|ref|YP_004159445.1| hypothetical protein BARCL_1203 [Bartonella clarridgeiae 73]
gi|319403316|emb|CBI76875.1| protein of unknown function [Bartonella clarridgeiae 73]
Length = 666
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 118/463 (25%), Positives = 203/463 (43%), Gaps = 57/463 (12%)
Query: 50 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 107
++++ Y ER I E L+R ++ ++ G++++ FP+++ +G L K R + +
Sbjct: 120 HQVKTYLHKERHIPLEILQRYQIGEE--GNKII--FPFYKPDGTLALVKER-LAENGAKA 174
Query: 108 KDT----EKVFYGLDDIEG------ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
K T E + +G + + ++I EGE+D LS+ G+ VSVP G
Sbjct: 175 KPTLSQCEPILFGWQALSSKERASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG---- 229
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+ K ++ N +L+ I LATD D PG+ A E+A R+GR RC+RVR
Sbjct: 230 --------GKGGKQNWIENEFDHLESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVR 281
Query: 218 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSG 276
P KDAN L + + E A+ + GL + DY +++ ++ +
Sbjct: 282 LPD-------KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHALDYKEQVVNLFYPPAK 334
Query: 277 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
G + + LN P ELT+ +G +GKS+ + I + E + L S+E
Sbjct: 335 QHLGYTVPYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIEQKS-RLCLASLEM 393
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
K + R+L ++ G ++ T E E+ +L LI E+ ++
Sbjct: 394 KGEQSLRRLTKQ-----------TGGTDQPTKEMIERVLHFLDA--GLILYEHVGKSNVD 440
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
+LD+ ++G +ID L +S + Q + + +A +A H+
Sbjct: 441 ALLDVFDYCRAKYGCDQFIIDSLMRLG----ISSDDYAGQEQAVYKIVDWAVLNAVHIHL 496
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
VAH R+ + P DI G++ N I I RNR E
Sbjct: 497 VAHARK-SGLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|262040832|ref|ZP_06014059.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041815|gb|EEW42859.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 623
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 116/462 (25%), Positives = 199/462 (43%), Gaps = 59/462 (12%)
Query: 49 GNELRAYFAERLISAETLRRNRV------MQKRHGHEVVIAFPYWRNGKLVNCKY----R 98
N Y A R I+ ET + RV + +A+PY RNG+L+ K R
Sbjct: 116 ANHCYDYLASRGITRETADQFRVSDAVVWYHDENREVAAVAYPYIRNGELLQVKRISTER 175
Query: 99 DFNKKF-WQEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 156
KK E D E +G ++ ++ +++ EGE+D ++ + G ++ +SVP G
Sbjct: 176 PGGKKLIMAEADCEPSLFGWQAMDAKARAVVLCEGEIDCMTYSQLG-ISALSVPFGGGKG 234
Query: 157 VSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRV 216
+++Q +Y+Y L + I L+ D D G+ A+E+ARR+G RC V
Sbjct: 235 -------AKQQWVEYEY-----HNLDRFDEIWLSLDNDEVGREAAKEIARRLGEHRCRLV 282
Query: 217 RWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDE-IDAYYHRT 274
P +KD NE L+ + + + + A+ + L + D E IDA+ HR
Sbjct: 283 ELP-------YKDINECLIAGVSEDDIWQCLGTAKFFDPDELCSAGDLLQETIDAFEHRD 335
Query: 275 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDAL-ICNINEHAGWKFVLCS 333
G ++ W +LN + GELT+V GV GK+E + + I +++ + + S
Sbjct: 336 VG---LFTSPWESLNSNFKFRAGELTLVNGVNGHGKTELVGHIAIAAMSQEV--RTCIAS 390
Query: 334 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 393
+E K K+L + ++ A S +R EE W S+ + + +
Sbjct: 391 LELK----PGKMLARLTRQTICTA----SPKR---EEIIMTNEWFSDRLWVFKLTGTAKA 439
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
+L++ A R+G+ VID + + E++ + F H CH
Sbjct: 440 GR--LLEIFAYARRRYGIDLFVIDNLAKCGLDEEDYGGQKEFIDTLCD----FKNEHNCH 493
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
V V H R+ + P D+ G+ + DN + + RN
Sbjct: 494 VLLVTHARKTNE--AAPTGKMDVKGTGALTDMPDNVMAVWRN 533
>gi|395788798|ref|ZP_10468339.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
gi|395431868|gb|EJF97875.1| hypothetical protein ME9_00056 [Bartonella taylorii 8TBB]
Length = 611
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 124/473 (26%), Positives = 203/473 (42%), Gaps = 68/473 (14%)
Query: 50 NELRAYF-AERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQE 107
N ++ Y ER I E L+R R+ + G +++ FP+++ +G L K R + +
Sbjct: 120 NLVKTYLHKERHIPLEILKRYRIGED--GEKII--FPFYKPDGTLALVKER-LAQAGAKP 174
Query: 108 KDT----EKVFYGLDDI---------------EGESDIIIVEGEMDKLSMEEAGFLNCVS 148
K T E + +G + I+I EGE+D LS+ G+ +S
Sbjct: 175 KPTAAQCEPILFGWQALCPTNHAPTTAQHAFSSTNRTIVITEGEIDALSLAAYGY-PALS 233
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
VP G S K+ ++ N +L+ I LATD D PG+ A E+A R+
Sbjct: 234 VPFGGGSG------------GKHNWIENEFDHLEPFETIFLATDMDKPGEEAAREIASRL 281
Query: 209 GRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEI 267
GR RC+RV P+ KDAN+ L + +K +A+ + GL + DY D++
Sbjct: 282 GRHRCYRVHLPR-------KDANDCLTAGIDTDTIKAAFLSAKSFTPEGLRHASDYKDQV 334
Query: 268 DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAG 326
+ G + + LN P ELT+ +G +GKS+ + I + I++ +
Sbjct: 335 IRLFWPEPEQHLGYTVPYPKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWISQKS- 393
Query: 327 WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
+ L S+E K + R+L ++ G E T E E+ +L + LI
Sbjct: 394 -RLCLASLEMKGEQSLRRLTKQT-----------GGLEHPTREMIERILHFLDD--GLIL 439
Query: 387 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
E+ S+ +LD+ R+G +ID L +S + Q + + +
Sbjct: 440 YEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG----ISSDDYAGQEQAVYKMVDW 495
Query: 447 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
A +A H+ VAH R+ + P DI G++ N I I RNR E
Sbjct: 496 AVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNRSLE 547
>gi|395780749|ref|ZP_10461204.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
gi|395417404|gb|EJF83742.1| hypothetical protein MCW_01291 [Bartonella washoensis 085-0475]
Length = 641
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 122/472 (25%), Positives = 198/472 (41%), Gaps = 80/472 (16%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDTE----- 111
ER I E L+R ++ + G++++ FP+++ +G L K R + + K T
Sbjct: 129 ERCIPLEILKRYQI--REEGNKII--FPFYKPDGTLALVKER-LAQAGAKAKPTAAQCEP 183
Query: 112 -----KVFYGLDDIEGESD------------------IIIVEGEMDKLSMEEAGFLNCVS 148
+ Y D +D ++I EGE+D LS+ G+ VS
Sbjct: 184 ILFGWQALYPADHTRAPADHAPALALIKQDFCSKNRTLVITEGEIDALSLAAYGY-PAVS 242
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
VP G K+ ++ N +L+ I LATD D PG+ A E+A R+
Sbjct: 243 VPFGGGVG------------GKHNWIENEFDHLEPFETIFLATDMDNPGEEAAHEIASRL 290
Query: 209 GRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEI 267
GR RC+RVR P+ KDAN+ L + +K +A+ + GL DY D++
Sbjct: 291 GRHRCYRVRLPR-------KDANDCLTAGVDTATIKAAFSSAKSFAPKGLRRASDYKDQV 343
Query: 268 DAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAG 326
+ G + + LN P ELT+ +G +GKS+ + I + I++ +
Sbjct: 344 IGLFWPAPEQHLGYTVPYPKLNGKLIFRPAELTLWSGASGAGKSQLLSDCIPHWISQKS- 402
Query: 327 WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
+ L S+E K + R+L ++ G E+ T E E+ +L L+
Sbjct: 403 -RLCLASLEMKGEQSLRRLTKQT-----------GGVEQPTREMIERILHFLDE--GLLL 448
Query: 387 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR- 445
E+ S+ +LD+ R+G +ID L T +Y Q + K
Sbjct: 449 YEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL------GITSDDYAGQEQAVYKMV 502
Query: 446 -FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496
+A +A H+ VAH R+ + P DI G++ N I I RNR
Sbjct: 503 DWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASEIGANAFNIITIWRNR 553
>gi|302832674|ref|XP_002947901.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
gi|300266703|gb|EFJ50889.1| hypothetical protein VOLCADRAFT_116604 [Volvox carteri f.
nagariensis]
Length = 1167
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 30/141 (21%)
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
V G+RGL+IDPYNELD +RP +ET+++ ++LT
Sbjct: 650 VCEFGIRGLLIDPYNELDSRRPRDTSETDFIRELLTK---------------------KV 688
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG-----PIDRVQVCVRKVRNK 516
G+ P LYDISGSAH+ NK DNGIV+HR P+ G + V + ++KVRNK
Sbjct: 689 LTGQAPGLYDISGSAHWFNKTDNGIVVHRRFQERTHPDTGKRYRVALPEVDIKLQKVRNK 748
Query: 517 VVGTIGEAFLSYNRVTGEYMD 537
+GT GEA+L Y++ TG Y D
Sbjct: 749 DIGTQGEAYLLYDKATGRYED 769
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 219 PKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE 278
P++ KDANEVLM GP L V+E+A+ + GL FR++ EI AY+ R +
Sbjct: 549 PRRGRGGFRKDANEVLMLDGPEQLVAVLESAQPAKVSGLATFREFEMEIAAYFQRQDPLQ 608
Query: 279 FGISTGWRALNELYNVLPGELTIV 302
G+STGWR L+ Y V PGELTIV
Sbjct: 609 LGVSTGWRCLDPFYRVAPGELTIV 632
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 130 EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ---------------DTKYQYL 174
+GEMDKL++ AGF N VSVP+GAP++ S EQ Y YL
Sbjct: 385 QGEMDKLALNAAGFWNVVSVPNGAPAATSASPSSPPEQLFVRPGERDQLRARVKLHYSYL 444
Query: 175 WNCKMYLKQ---ASRIILATDGDPPGQALAEELARRVGRERCWRV 216
+ M L R LATD DP G AL EL RR+GRERCW V
Sbjct: 445 DSFLMALPADVGRCRFTLATDNDPAGGALRRELLRRLGRERCWEV 489
>gi|423711659|ref|ZP_17685964.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
gi|395413520|gb|EJF79985.1| hypothetical protein MCQ_00528 [Bartonella washoensis Sb944nv]
Length = 648
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 164/375 (43%), Gaps = 46/375 (12%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
++I EGE+D LS+ G+ VSVP G K+ ++ N +L+
Sbjct: 228 LVITEGEIDALSLAAYGY-PAVSVPFGGGVG------------GKHNWIENEFDHLEPFE 274
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 275 TIFLATDMDNPGEEAAHEIASRLGRHRCYRVRLPR-------KDANDCLTAGVDTATIKA 327
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 328 AFSSAKSFAPKGLRRASDYKDQVIGLFWPAPEQHLGYTVPYPKLNGKLIFRPAELTLWSG 387
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 388 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGV 434
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L L+ E+ S+ +LD+ R+G +ID L
Sbjct: 435 EQPTREMIERILHFLDE--GLLLYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL- 491
Query: 424 HQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
T +Y Q + K +A +A H+ VAH R+ + P DI G++
Sbjct: 492 -----GITSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASE 545
Query: 482 FINKCDNGIVIHRNR 496
N I I RNR
Sbjct: 546 IGANAFNIITIWRNR 560
>gi|319404739|emb|CBI78341.1| hypothetical protein BARRO_120115 [Bartonella rochalimae ATCC
BAA-1498]
Length = 679
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 198/455 (43%), Gaps = 58/455 (12%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDT----EK 112
ER I E L++ R+ ++ G++++ FP+++ +G L K R + K T E
Sbjct: 129 ERCIPLEILQQYRIGEE--GNKII--FPFYKPDGTLALVKER-LAENGATAKPTASQCEP 183
Query: 113 VFYG------LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
+ +G D + ++I EGE+D LS+ G+ VSVP G K+N E
Sbjct: 184 ILFGWQALSFKDCASTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG-GKGGKQNWIENE 241
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
D L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 242 FDR-----------LESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPG------ 284
Query: 227 FKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KDAN L + + E A+ + GL + DY +++ ++ ++ G + +
Sbjct: 285 -KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHVLDYKEQVINLFYPSAKQHLGYTVPY 343
Query: 286 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARK 344
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+
Sbjct: 344 SKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRR 401
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
L ++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 402 LTKQT-----------GGTDQPTKEMIERVLHFLDA--GLILYEHVGKSSVDALLDIFDY 448
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 464
++G +ID L ++ + Q + + +A +A H+ V H R+
Sbjct: 449 CRAKYGCDQFIIDSLMRLG----IASDDYARQEQAVYKIVDWAVLNAVHIHLVTHTRK-S 503
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ P DI G++ N I I RNR E
Sbjct: 504 GLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 538
>gi|319407703|emb|CBI81351.1| hypothetical protein B11C_190057 [Bartonella sp. 1-1C]
Length = 681
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 119/455 (26%), Positives = 197/455 (43%), Gaps = 58/455 (12%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDT----EK 112
ER I E L++ R+ ++ G++++ FP+++ +G L K R K K T E
Sbjct: 131 ERCIPLEILQQYRIGEE--GNKII--FPFYKPDGTLALVKER-LAKNGATAKPTASQCEP 185
Query: 113 VFYGLDDIE------GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
+ +G + + ++I EGE+D LS+ G+ VSVP G K+N E
Sbjct: 186 ILFGWQALSFKDCDSTDRTLVITEGEIDALSLAAYGY-PAVSVPFGG-GKGGKQNWIENE 243
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
D L+ I LATD D PG+ A E+A R+GR RC+RVR P
Sbjct: 244 FDR-----------LESFETIFLATDMDTPGEEAAFEIAHRLGRHRCYRVRLPS------ 286
Query: 227 FKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KDAN L + + E A+ + GL + DY +++ ++ + G + +
Sbjct: 287 -KDANACLQAGVDASIIHEAFLQAQSFTPKGLRHVLDYKEQVINLFYPPAKQHLGYTVPY 345
Query: 286 RALNELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARK 344
LN P ELT+ +G +GKS+ + I + I + + + L S+E K + R+
Sbjct: 346 PKLNGKLYFRPAELTLWSGASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRR 403
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
L ++ G ++ T E E+ +L LI E+ S+ +LD+
Sbjct: 404 LTKQT-----------GGTDQPTKEMIERVLHFLDA--GLILYEHVGKSSVDALLDIFDY 450
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 464
++G +ID L ++ + Q + + +A +A H+ V H R+
Sbjct: 451 CRAKYGCDQFIIDSLMRLG----IASDDYARQEQAVYKIVDWAVLNAVHIHLVTHTRK-S 505
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ P DI G++ N I I RNR E
Sbjct: 506 GLEKDVPGTEDIKGASEIGANAFNIITIWRNRSLE 540
>gi|168006500|ref|XP_001755947.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692877|gb|EDQ79232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 131
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/144 (42%), Positives = 76/144 (52%), Gaps = 44/144 (30%)
Query: 334 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP 393
MENKVR+HA KL+EKH +++ L
Sbjct: 1 MENKVRKHAMKLIEKH--------------------------------------KDEELL 22
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
S+ WVLDLAKA V+RHG+ GLVIDPYN+L + S +S +KRFAQHH C
Sbjct: 23 SVDWVLDLAKADVMRHGICGLVIDPYNKLGIKPRRS------MSVKCLQIKRFAQHHDCQ 76
Query: 454 VWFVAHPRQLHNWVGEPPNLYDIS 477
VWFVAHPRQ+ W GE +LY I+
Sbjct: 77 VWFVAHPRQVQVWSGEARSLYAIN 100
>gi|395781233|ref|ZP_10461656.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
gi|395421610|gb|EJF87850.1| hypothetical protein MCY_00053 [Bartonella rattimassiliensis 15908]
Length = 641
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 165/376 (43%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
++I EGE+D LS+ G+ VSVP G S +K+ ++ N +L+
Sbjct: 236 LVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------SKHNWIENEFDHLETFE 282
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RV P KDAN+ L + ++
Sbjct: 283 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVLLP-------LKDANDCLTAGIDRATIQS 335
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + LN + P ELT+ +G
Sbjct: 336 AFSSAKSFAPEGLRRASDYKDKVMKLFWPEPEQHIGYTVPYPKLNGKLHFRPAELTLWSG 395
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 396 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 442
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E EQ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 443 EQPTREMIEQILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 500
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 501 ----IASDDYAKQEQAVYKMVDWAVLNGVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 555
Query: 484 NKCDNGIVIHRNRDPE 499
N I + RNR E
Sbjct: 556 ANAFNIITVWRNRSLE 571
>gi|395765343|ref|ZP_10445950.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
gi|395412373|gb|EJF78881.1| hypothetical protein MCO_00582, partial [Bartonella sp. DB5-6]
Length = 455
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 167/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ +SVP G K+ ++ N +L+
Sbjct: 36 IVITEGEIDALSLAAYGY-PALSVPFGGGVG------------GKHNWIENEFDHLEPFE 82
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 83 TIFLATDMDKPGEEAACEIASRLGRHRCYRVRLPR-------KDANDCLTAGIDADTIKA 135
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L+ P ELT+ +G
Sbjct: 136 AFLSAKSFAPEGLRRASDYKDQVIGLFWPEPEQHLGYTVPYPKLHGKLYFRPAELTLWSG 195
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 196 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 242
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 243 EQPTREMIERILHFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 300
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+S + Q + + +A +A H+ VAH R+ + P+ DI G++
Sbjct: 301 ----ISSDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPSTEDIKGASEIG 355
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 356 ANAFNIITIWRNRSLE 371
>gi|241665023|ref|YP_002983383.1| hypothetical protein Rpic12D_3447 [Ralstonia pickettii 12D]
gi|240867050|gb|ACS64711.1| conserved hypothetical protein [Ralstonia pickettii 12D]
Length = 597
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 195/465 (41%), Gaps = 56/465 (12%)
Query: 45 LEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKY----RDF 100
+ P G L+ ER +S ET+R +V + +V FPY R+ +L+N K+ RD
Sbjct: 114 VSPAGRVLKYLTEERKLSLETIRAFKVAASKEDDAIV--FPYLRDAELINLKHLALERDS 171
Query: 101 N--KKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
K+ WQ E +G D + + ++IVEGE+D +S+ E G + +SV GA +
Sbjct: 172 KGKKRTWQSAGAEPCLFGWDLVPDSAKAVLIVEGELDAMSLYEYG-IAALSVNQGAGN-- 228
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+Q++ + L++ I L D D GQ E+A+R+G +RC V+
Sbjct: 229 -------------HQWIDSDFDRLERFPEIFLWFDNDEAGQKGVREVAQRLGLDRCRIVK 275
Query: 218 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSG 276
+ KDANE L + + E ++ AE L Y D++ A +
Sbjct: 276 F-------RLKDANEALQQGVTAEEIGEALDAAERIEPTDLRTPAAYLDDVLAMFRDGPV 328
Query: 277 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
+ G + W A ++ + P EL++ TG+ GKS+ + + ++ G + + S E
Sbjct: 329 NTVGGALPWPAWSDKVRLRPAELSVRTGINGHGKSDLLGQVCVDLIRQ-GERVCIFSGEM 387
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
K R L + + +A ++ G WL I DSL
Sbjct: 388 KPANVLRHLTIQACATSTPTERFVRAA-----NDWMCGALWLYAHVGTI--SQDSL---- 436
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHV 454
L+ + A R+ V V+D + E +Y +Q L + F HV
Sbjct: 437 --LEAFRYAAKRYRVTHFVVDSLLK------CGIAEDDYKAQKAFLDRLCDFKNEFNAHV 488
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
VAH R+ + + P D+ G+ + DN + RN+ E
Sbjct: 489 HLVAHARKGES-EDKAPGKLDVRGAGAITDLADNVFTVWRNKRKE 532
>gi|395787910|ref|ZP_10467489.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
gi|395410045|gb|EJF76622.1| hypothetical protein ME7_00824 [Bartonella birtlesii LL-WM9]
Length = 706
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 102/376 (27%), Positives = 165/376 (43%), Gaps = 44/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ +SVP G K+ ++ N +L+
Sbjct: 292 IVITEGEIDALSLATYGY-PALSVPFGGGVG------------GKHNWIENEFDHLEAFE 338
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+A A E+A R+GR RC+RV P KDANE L + +K
Sbjct: 339 TIFLATDMDKPGEAAAHEIASRLGRHRCYRVHLP-------LKDANECLTAGIDAPTMKA 391
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L+ + P ELT+ +G
Sbjct: 392 AFSSAKSFAPAGLRRASDYKDKVIGLFWPEPEQHVGYTLPYPKLHGKLHFRPAELTLWSG 451
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 452 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 498
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E EQ +L LI E+ +++ +LD+ R+G +ID L
Sbjct: 499 EQPTKEMIEQILHFLDE--GLILYEHVGKSNVESLLDIFDYCRARYGCDQFIIDSLMRLG 556
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 557 ----IASDDYAGQEQAVYKMVDWAILNNVHIHLVAHARKGGLDI---PGTEDIKGASEIG 609
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 610 ANAFNIITIWRNRSLE 625
>gi|395791877|ref|ZP_10471327.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
gi|395407645|gb|EJF74290.1| hypothetical protein MEC_01318 [Bartonella alsatica IBS 382]
Length = 676
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 100/376 (26%), Positives = 166/376 (44%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VS+P G K+ ++ N +L+
Sbjct: 256 IVITEGEIDALSLAAYGY-PAVSLPFGGGVG------------GKHNWIENEFDHLESFE 302
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RV P+ KDAN+ L + +K
Sbjct: 303 TIFLATDMDKPGEEAAHEIASRLGRHRCYRVYLPR-------KDANDCLTAGIDAETIKA 355
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 356 AFSSAKSFAPEGLRRASDYKDQVIGLFWPEPEQHLGYTVPYPKLNGKLYFRPAELTLWSG 415
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 416 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 462
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L + LI E+ +++ +LD+ R+G +ID L
Sbjct: 463 EQPTKEMIERILHFLDD--GLILYEHVGKSNVETLLDVFDYCRARYGCDQFIIDSLMRLG 520
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A ++ H+ VAH R+ + P DI G++
Sbjct: 521 ----IASDDYAGQEQAVYKMVDWAVLNSVHIHLVAHARK-GGLDKDIPGTEDIKGASEIG 575
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 576 ANAFNIITIWRNRSLE 591
>gi|428164842|gb|EKX33854.1| hypothetical protein GUITHDRAFT_98228 [Guillardia theta CCMP2712]
Length = 440
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 117/473 (24%), Positives = 192/473 (40%), Gaps = 73/473 (15%)
Query: 82 IAFPYWR--NGKLVNCKYRDFNKKFWQEKDTEK---VFYGLDDI-EGESDIIIVEGEMDK 135
+ FP++ +LV K R K + D F+G + E ++I++ EGE+D
Sbjct: 3 VTFPWFSPTESELVRVKVRAIEDKKCMKLDPSGNIWGFFGWTTVSEDTTEIVLTEGEIDA 62
Query: 136 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
+++ + L +S+P+GA S +P E L++ I L D D
Sbjct: 63 MTVYQETGLPSLSLPNGASS------LPVE-----------LIAMLERFQTIYLWMDDDV 105
Query: 196 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
PG+ A +++GR RC +V W + KDAN+ L + ++ A++ P
Sbjct: 106 PGREGARMCLKKLGRHRC-KVVWCRDGGNSGPKDANDALQKY---EISTILSKAQIVPHD 161
Query: 256 GLFNFRDYFDEID---AYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNS 308
+ F D EI Y+ SG FG AL L +L PGE TIVTG
Sbjct: 162 HILRFEDIRREIQEQLTSYNSISGISFG-----SALPTLTKILKGHRPGEFTIVTGRTGQ 216
Query: 309 GKSEWIDAL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
GK+ + L +C H W S E K K+L++H KK + G ++R
Sbjct: 217 GKTTMLSQLSIDLCEQGVHTLWG----SFEIKNARLGAKMLQQHSKK-----SLRGCSDR 267
Query: 366 M---TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422
+ F Q W + + ++ VLD + AV V+ +V+D +
Sbjct: 268 EFNDAADAFSQLPLWFLSYYGTTDIDD--------VLDAMEFAVYSKDVKHVVLDNLQFM 319
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHF 482
+ + Q + ++ FA H+ V HPR+ + L I G+A
Sbjct: 320 TSGAYRESDTFKILDQAIHKLRLFATDFNVHISLVIHPRKDDE--SQLLTLSSIFGTAKA 377
Query: 483 INKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ DN I++ N G I + + +N+ G++G +N T Y
Sbjct: 378 TQESDNVIILQTN-----GAIKYLDI----RKNRFDGSLGCVPFKFNEKTLRY 421
>gi|386742315|ref|YP_006215494.1| gp61 [Providencia stuartii MRSN 2154]
gi|384479008|gb|AFH92803.1| gp61 [Providencia stuartii MRSN 2154]
Length = 630
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 106/432 (24%), Positives = 186/432 (43%), Gaps = 60/432 (13%)
Query: 81 VIAFPYWRNGKLVNCKY----RDFNKK-FWQEKDTEKVFYGLDDIEGESDIIIV-EGEMD 134
IAFPY R+G+L+ K R KK E + E +G + + ++I+ EGE+D
Sbjct: 161 AIAFPYKRDGELLQVKRIGIERPNGKKVIMAEANCEPCLFGWQAMPNNARVLILCEGEID 220
Query: 135 KLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGD 194
+S + G L +SVP G ++ + E + L + + I L+ D D
Sbjct: 221 CMSYHQYG-LPALSVPFGGGKGAKQQWIEFEYHN------------LDRFTEIWLSLDND 267
Query: 195 PPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYP 253
GQ A+E+A R+G RC ++ PK KD NE L + L +E A +
Sbjct: 268 EVGQIAAKEIASRLGEHRCRMLKLPK-------KDINECLQAGMTEDELFRYIETAAYFD 320
Query: 254 IMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 312
L++ R+++ D +DA+Y + +++ T W LN ++ ELT++ GV GK+E
Sbjct: 321 PEELYSAREFYQDAVDAFYGK---EQYLFRTPWEPLNYNFSFREAELTVINGVNGHGKTE 377
Query: 313 WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFE--ANYGGSAERMT 367
+ ++ + + S+E K + ++L+ + K P E A++G
Sbjct: 378 VVGHIMLEAMRQQT-RVCVASLELKPGQLLKRLIRQTTCSEKPPIMEIDASFG------- 429
Query: 368 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
F + W+ + E +L++ + A R+GV+ VID +
Sbjct: 430 ---FYDDRLWVFGLTGTAKAER--------LLEIFEYAHRRYGVKLFVIDSLMKCGIGEE 478
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487
+ +V + F HV V H R+ + +P D+ G+ + D
Sbjct: 479 DYNGQKAFVDALCD----FKNKTNSHVILVTHSRK-SDSEEKPTGKMDVKGTGAITDLTD 533
Query: 488 NGIVIHRNRDPE 499
N ++I RN+ E
Sbjct: 534 NLMIIWRNKARE 545
>gi|224143098|ref|XP_002335987.1| predicted protein [Populus trichocarpa]
gi|222837877|gb|EEE76242.1| predicted protein [Populus trichocarpa]
Length = 947
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 115/462 (24%), Positives = 197/462 (42%), Gaps = 63/462 (13%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 109
++ + R I+ ET+ RV ++ G + FPY R G+LVN KYR+ +K QE
Sbjct: 468 VKEWLNGRGITDETIAAFRVAEQIRGGKTYAVFPYLRAGELVNVKYRNIAEKRDMRQEGG 527
Query: 110 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
E +G I+ ++ + I EGE+D +++ + G + +SV GA +
Sbjct: 528 AEPCLFGWHLIDPKARTVAITEGEIDAMTLHQVG-IPALSVNAGAGN------------- 573
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+Q+L N L S I++ D D G+A A+E+ RR+G ERC V P+ K
Sbjct: 574 --HQWLENDWERLDCFSEILIFFDSDEAGKAGAQEIVRRLGLERCKLVTLPE-------K 624
Query: 229 DANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYY---HRTSGDEFGI 281
DANE +L GA E + A+ + D+ + + + + H +GD
Sbjct: 625 DANE---FLQKGACGEDFWHATKEAKTLDPEEMRQASDFINRVKSMFYPAHDDAGDPV-- 679
Query: 282 STGWRALNEL--YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
R +L + GE+T+ TG GKS + ++ + + V R
Sbjct: 680 ---LRLDKDLDWFEFRSGEVTVWTGYNGHGKSLMLSQVLLGLMQQGDRVMVFSGEMTPER 736
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
+ L++ +K+ +R ++ + AWL + + I +L
Sbjct: 737 Q-----LKRTVKQ-------AAGLDRPSMPYIDAIGAWLHDKQWFFNVVGSA--GIDRLL 782
Query: 400 DLAKAAVLRHGVRGLVIDP--YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
+ R+G+R VID ++ P S T + + + + FA+ + HV V
Sbjct: 783 AVFLYGSKRYGMRHFVIDSLMMTDVPEDGPGSMTAQK---EAVRKICDFARRNGVHVHLV 839
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
AHPR+ + P L D++GS+ + DN + R E
Sbjct: 840 AHPRKGADESKGPGKL-DVAGSSKITDGADNVFTVWSARKDE 880
>gi|317491569|ref|ZP_07950005.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316921116|gb|EFV42439.1| hypothetical protein HMPREF0864_00768 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 626
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 122/498 (24%), Positives = 206/498 (41%), Gaps = 65/498 (13%)
Query: 18 DNNRSQSSLKKFSKMK--TIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQK- 74
D++ + KKFSK K IR+ + ++ AY R IS ET +V
Sbjct: 95 DHHFAAKQQKKFSKPKPENIRKFLRKT-------DDCFAYLETRGISRETAEAYKVSSAV 147
Query: 75 --RHGHE---VVIAFPYWRNGKLVNCKY----RDFNKK-FWQEKDTEKVFYGLDDIEGES 124
H + IAFPY R+ +L+ K R KK E D E +G +
Sbjct: 148 VWSHDEQRELPAIAFPYKRDDQLLQVKRISTERPNGKKVIMAEGDCEPCLFGWQAMPKNI 207
Query: 125 DIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
I+++ EGE+D +S + G L +SVP G ++ + E + L +
Sbjct: 208 RIVVLCEGEIDCMSYHQYG-LPALSVPFGGGKGAKQQWIEFEYHN------------LDR 254
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGAL 242
I ++ DGD GQA A+E+A R+G RC V+ P KD NE L + +
Sbjct: 255 FDEIWISMDGDEVGQAAAKEIASRLGEHRCRLVKLPH-------KDINECLQAGISSDEI 307
Query: 243 KEVVENAELYPIMGLFNFRDYFDE-IDAYYHRTSGDEFGISTGWRALNELYNVLPGELTI 301
++E AE + L++ R+++ E + A+Y + ++ + W LN + ELT+
Sbjct: 308 IGLLEKAEYFDPEELYSAREFYQETVKAFYGK---EQSMFYSPWEPLNHNFAFRESELTL 364
Query: 302 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361
V GV GK+E + ++ G + + S+E K +L K + + A
Sbjct: 365 VNGVNGHGKTEVVGHMVLQAMRQ-GVRTCVASLELKP-----AILLKRLTRQATCAKLPP 418
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
E + +F + WL + + ++++ + A R+G+ VID +
Sbjct: 419 EIEIESAFKFYDDRLWLFGLTGTAKADR--------LIEIFQYARRRYGIELFVIDSLMK 470
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
+ + + + F CHV V H R+ + +P D+ GS
Sbjct: 471 CG----IGDDDYNGQKAFIDALCDFKNKTNCHVILVTHSRK-GDSEEKPTGKMDVKGSGS 525
Query: 482 FINKCDNGIVIHRNRDPE 499
+ DN +I RN+ E
Sbjct: 526 ITDLTDNLFIIWRNKPRE 543
>gi|163869018|ref|YP_001610249.1| hypothetical protein Btr_2129 [Bartonella tribocorum CIP 105476]
gi|161018696|emb|CAK02254.1| phage-related protein [Bartonella tribocorum CIP 105476]
Length = 1136
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 740 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GKGGKHNWIENEFDHLEAFE 786
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RVR P+ KDAN+ L + +K
Sbjct: 787 TIFLATDMDQPGEEAAHEIASRLGRHRCYRVRLPR-------KDANDCLTAGIDAATIKA 839
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + L + + P ELT+ +G
Sbjct: 840 AFSSAKSFAPEGLRRASDYKDQVIGLFWPEPEKHLGYTVPYPKLKDKLHFRPAELTLWSG 899
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I +++ + L S+E K + R+L ++ G
Sbjct: 900 ASGAGKSQLLSDCIPHWIAQNS--RLCLASLEMKGEQSLRRLTKQ-----------TGGL 946
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T E E+ +L N LI E+ S+ +LD+ R+G +ID L
Sbjct: 947 EKPTKETIERILHFLDN--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 1004
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A ++ H+ VAH R+ + P DI G++
Sbjct: 1005 ----IASDDYGGQEQAVYKMVDWAVLNSVHIHLVAHARKG-GLDKDIPGTEDIKGASEIG 1059
Query: 484 NKCDNGIVIHRNRD 497
N I I RNR
Sbjct: 1060 ANAFNIITIWRNRS 1073
>gi|121602385|ref|YP_988524.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|421760337|ref|ZP_16197156.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
gi|120614562|gb|ABM45163.1| putative DNA primase/helicase [Bartonella bacilliformis KC583]
gi|411176054|gb|EKS46075.1| putative DNA primase/helicase [Bartonella bacilliformis INS]
Length = 788
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/389 (25%), Positives = 171/389 (43%), Gaps = 42/389 (10%)
Query: 110 TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 169
+++ F + + D++I EGE+D LS+ G+ +S+P G +
Sbjct: 361 SDRAFPPTQNAKQARDLVITEGEIDALSLAAYGY-PALSLPFGG------------GKGG 407
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
K+ ++ +L+ +I LATD DPPG+ A +A R+GR RC+RV P +KD
Sbjct: 408 KHAWIEQEFDHLEIFEKIYLATDMDPPGEEAALAIANRLGRHRCYRVCLP-------YKD 460
Query: 230 ANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
AN+ L L + + A+ + GL DY +++ + G S + L
Sbjct: 461 ANDCLTAGLDAATIAQAFAKAKSFAPEGLHRASDYKEKVLELFWPNPEQHVGYSVPYPKL 520
Query: 289 NELYNVLPGELTIVTGVPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLE 347
+ P ELT+ +G +GKS+ + I + I + + + L S+E K + R+L++
Sbjct: 521 EGKLSFRPAELTLWSGASGAGKSQLLSDCIPHWIAQES--RLCLASLEMKGEQSLRRLIK 578
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ G T E+ EQ +L + LI E+ +++ +LD+
Sbjct: 579 QT-----------GGTSHPTKEKIEQILHFLDH--GLILYEHVGKSNVETLLDVFDYCRA 625
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
++G +ID L ++ + Q + + +A +A HV VAH R+
Sbjct: 626 KYGCDQFIIDSLMRLG----IAADDYTGQEQAVYKIVDWAVLNAVHVHLVAHARK-SGVD 680
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNR 496
+ P DI G++ N I I RNR
Sbjct: 681 KDIPGTEDIKGASEIGANAFNIITIWRNR 709
>gi|300724256|ref|YP_003713574.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
gi|297630791|emb|CBJ91460.1| hypothetical protein XNC1_3413 [Xenorhabdus nematophila ATCC 19061]
Length = 631
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 190/471 (40%), Gaps = 70/471 (14%)
Query: 50 NELRAYFAERLISAETLRR------NRVMQKRHGHEVVIAFPYWRNGKLVNCK-----YR 98
++ AY A R IS +T N + IAFPY RNG+L+ K
Sbjct: 122 DQCYAYLASRGISRQTAEAFEIEDANVWFPAENRTLPAIAFPYKRNGELLQVKRISTELP 181
Query: 99 DFNKKFWQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
+ K E E +G I ++I+ EGE+D +S + G L +SVP G
Sbjct: 182 NGKKVIMAESQCEPCLFGWQAIPNHVRLVILCEGEIDCMSYHQYG-LPALSVPFGGGKGA 240
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
++ + E + L + I ++ D D GQ A+E+A R+G RC VR
Sbjct: 241 KQQWIEFEYHN------------LDRFEEIWISMDNDDVGQEAAKEIANRLGAHRCRLVR 288
Query: 218 WPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTS 275
P KD NE L + + +E A + L + R+++ D IDA+Y
Sbjct: 289 LPH-------KDINECLQAGMTQDDVIRCLETAAFFDPEELCSAREFYQDTIDAFY---- 337
Query: 276 GDEFGI-STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334
G E + T W+ L+ ++ ELT++ GV GKSE + L+C G + + S
Sbjct: 338 GQEHCLFKTPWKMLDPHFSFRESELTVLNGVNGHGKSEMVGHLLCEAMGQ-GIRACVASF 396
Query: 335 ENKVREHARKLLEKHI---KKPFFEANYGGSAERMTVEEFEQGKAW---LSNTFSLIRCE 388
E K + ++L ++ + P E + +F + W L+ T R
Sbjct: 397 ELKPGQLLKRLTQQVACSERPPVIEID--------AAFQFYDDRLWVFGLTGTAKAAR-- 446
Query: 389 NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 448
V+D+ A R+G++ VID + + +V + F
Sbjct: 447 ---------VIDIFNYAQRRYGIQLFVIDSLMKCGIGEDDYNGQKAFVDALCD----FKN 493
Query: 449 HHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
HV V H R+ + P D+ G+ + DN ++I RN+ E
Sbjct: 494 RTRSHVILVTHSRK-GDSEERPTGKMDVKGTGAITDLTDNLMIIWRNKARE 543
>gi|373117031|ref|ZP_09531182.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371669107|gb|EHO34211.1| hypothetical protein HMPREF0995_02018 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 568
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 113/447 (25%), Positives = 192/447 (42%), Gaps = 70/447 (15%)
Query: 47 PLGNE--LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK-- 102
P+G++ + YF +R IS TL V Q G+ ++ Y N L KYR K
Sbjct: 38 PIGDKSKIYGYFKKRCISPSTLDYADVRQDEEGN--IVWNYYDTNDVLTMVKYRPSRKVR 95
Query: 103 ----KFWQEK--DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 156
K W +K DT + + ++ + S ++I EGE D LS EAGF N VSVP G+
Sbjct: 96 KGENKCWCQKGADTCNLLFNMNRVNVNSPLLICEGEPDCLSAIEAGFSNAVSVPLGS--- 152
Query: 157 VSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRV 216
T + ++ +L+Q II+ +D D G + +E+ R+G R V
Sbjct: 153 ------------TNFHWIEENWDWLEQFDNIIICSDNDEAGYKMQKEVVYRLGSWRTRVV 200
Query: 217 RWPKKNDVDH-----FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
P+ + D D NE L Y G + +++ NA+ P+ G+ +F
Sbjct: 201 EVPQIFETDDGRKFPVNDLNEALYYFGKERVLDLILNAKDSPVPGVIDFS-------DIQ 253
Query: 272 HRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330
GI TG + L+ L + G L I+TG+ +GKS +I+ LI E F+
Sbjct: 254 DIDIDQIDGIRTGIKTLDRYLMKIFLGTLNIITGINGAGKSSFINQLIIQSLEEEKNVFL 313
Query: 331 LC---------SMENKVREHARKLLEKHIKKPFFEANYGGSAE-RMTVEEFEQGKAWLSN 380
+ N V R + EKH + + Y E + +++ F +G+
Sbjct: 314 FSGELPNFQTKNWLNSVIAGQRYIDEKHSGEAVY---YKVQPEAKRSIDNFYRGR----- 365
Query: 381 TFSLIRCENDSLPSIKWVL-DLAKAAVLRHGVRGLVIDPYNELDHQRPVS---QTETEYV 436
+ D P+ K L + AV ++GV+ +++D ++ + ++E+V
Sbjct: 366 ----LHIYEDGQPNTKTALMTTIEDAVRKYGVKLVILDNLTAINLECSDDNKYNKQSEFV 421
Query: 437 SQMLTMVKRFAQHHACHVWFVAHPRQL 463
+++ K+F + V HP ++
Sbjct: 422 MELIAFAKKF----NVAIVLVVHPHKI 444
>gi|395767793|ref|ZP_10448325.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
gi|395413600|gb|EJF80063.1| hypothetical protein MCS_01258 [Bartonella doshiae NCTC 12862]
Length = 649
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 166/378 (43%), Gaps = 46/378 (12%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VS+P G + K+ ++ N +L+
Sbjct: 245 IVITEGEIDALSLAAYGY-PAVSLPFGGGTG------------GKHNWIENEFDHLEIFE 291
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RV P+ KDANE L + ++
Sbjct: 292 TIFLATDMDKPGEEAAHEIANRLGRHRCYRVHLPR-------KDANECLTAGVDAASIAA 344
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL +Y D++ + T G + + LN P ELT+ +G
Sbjct: 345 AFSSAKSFAPKGLRRASEYKDQVIGLFWPTPEKHLGYTVPYPKLNGKLYFRPAELTLWSG 404
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 405 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQ-----------TGGI 451
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ T + E+ +L N LI E+ S+ +LD+ R+G +ID L
Sbjct: 452 EQPTKDMIERVLYFLDN--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRL- 508
Query: 424 HQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
T +Y Q + K +A +A H+ VAH R+ + P DI G++
Sbjct: 509 -----GITSDDYAGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDIPGTEDIKGASE 562
Query: 482 FINKCDNGIVIHRNRDPE 499
N I I RN+ E
Sbjct: 563 IGANAFNIITIWRNKSLE 580
>gi|49476113|ref|YP_034154.1| phage-like protein [Bartonella henselae str. Houston-1]
gi|49238921|emb|CAF28216.1| phage related protein [Bartonella henselae str. Houston-1]
Length = 919
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 162/376 (43%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
++I EGE+D LS+ G+ VSVP G K ++ N +L+
Sbjct: 498 LVITEGEIDALSLAAYGY-PAVSVPFGG------------GVGGKQNWIENEFDHLESFE 544
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+GR RC+RV+ P KDAN+ L + +K
Sbjct: 545 IIFLATDMDKPGEEAAHEIANRLGRHRCYRVQLP-------CKDANDCLTAGIDAATIKA 597
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL DY D++ + G + + LN P ELT+ +G
Sbjct: 598 AFSSAKSFAPKGLRRASDYKDQVIGLFWPEPKQHLGYTVPYPKLNGKLYFRPAELTLWSG 657
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I++ + + L S+E K + R+L ++ G
Sbjct: 658 ASGAGKSQLLSDCIPHWISQKS--RLCLASLEMKGAQSLRRLTKQ-----------TGGL 704
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E T E E+ +L + LI E+ S+ +LD+ R+G +ID L
Sbjct: 705 EHPTREMIERILQFLDD--GLILYEHVGKSSVDTLLDVFDYCRARYGCDQFIIDSLMRLG 762
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A + H+ VAH R+ + P DI G++
Sbjct: 763 ----IASDDYTGQEQAVYKMVDWAILNNVHIHLVAHARK-SGLDKDIPGTEDIKGASEIG 817
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 818 ANAFNIITIWRNRSLE 833
>gi|224056775|ref|XP_002299017.1| predicted protein [Populus trichocarpa]
gi|222846275|gb|EEE83822.1| predicted protein [Populus trichocarpa]
Length = 68
Score = 94.7 bits (234), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 16/84 (19%)
Query: 129 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
VEGE+DKLS+EEAGF NCVSVP GAP VS K++PS +++ SRI+
Sbjct: 1 VEGEIDKLSVEEAGFRNCVSVPGGAPQIVSAKDLPS----------------IQKLSRIV 44
Query: 189 LATDGDPPGQALAEELARRVGRER 212
LATDGD G++LAEELARR+G+ER
Sbjct: 45 LATDGDTSGRSLAEELARRLGKER 68
>gi|254501077|ref|ZP_05113228.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222437148|gb|EEE43827.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 494
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 211/489 (43%), Gaps = 74/489 (15%)
Query: 75 RHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEK--VFYGLDDIEGESDIIIVEG 131
+ G + +A PY NG+ V K R +KKF+ D K +F +G +++ EG
Sbjct: 41 KTGDTIQVA-PYKDANGRTVAQKVRGKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEG 99
Query: 132 EMDKLSMEEA-GFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
E+D +S+ +A VS+P+GA S+ + K+N+ +L+ +I+
Sbjct: 100 EIDAMSVHQALKTWPAVSIPNGAQSAAAAVKENLE----------------FLESYEKIV 143
Query: 189 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE- 247
DGD PGQ A+E AR + + P KDANE+L G +E+V+
Sbjct: 144 FMFDGDEPGQKAAQECARVLSPGKACIATLP-------LKDANEMLK---EGRTQELVQA 193
Query: 248 --NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTG 304
A Y G+ + +D +++ E GIS W ++N + Y GELT T
Sbjct: 194 FWEASEYRPDGIVSGKDVWEQA------VKQTEQGISYPWPSMNGITYGQRKGELTTWTA 247
Query: 305 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 364
GKS ++ + ++ + G+K +E V A+ L+ H+ KP S E
Sbjct: 248 GSGMGKSAFVREIEYDLLKQ-GYKVASIRLEENVGRTAKGLMGIHLNKPIHLPGQEVSEE 306
Query: 365 RMTVEEFEQ----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
M + FE G+ WL + F + E+D+L S +R+ +GL +D +
Sbjct: 307 DMRI-AFEATVGCGRFWLLDHFGSL--EDDNLMS-----------KMRYLAKGLGVD-FI 351
Query: 421 ELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---GEPP 471
LDH V E + ++T ++ + + ++H ++ G
Sbjct: 352 ILDHISIVVSGMDTGSDERRVIDNLMTQLRSLVEESGVGMHLISHLKRADKKGHEDGAQI 411
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNR 530
+L + GS D I + RN+ ++ R VR ++N+ G G A++ Y++
Sbjct: 412 SLSQLRGSGAIAQLSDMVIGLERNQQAKSEDA-RNLTKVRVLKNRFSGETGIAAYVRYDK 470
Query: 531 VTGEYMDIV 539
TG ++
Sbjct: 471 DTGRLNEVA 479
>gi|254505329|ref|ZP_05117477.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
gi|222436173|gb|EEE42855.1| Toprim domain protein [Labrenzia alexandrii DFL-11]
Length = 539
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 212/489 (43%), Gaps = 74/489 (15%)
Query: 75 RHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEK--VFYGLDDIEGESDIIIVEG 131
+ G + +A PY NG+ V K R +KKF+ D K +F +G +++ EG
Sbjct: 86 KTGDTIQVA-PYKDANGRTVAQKVRGKSKKFYTLGDFSKAGLFGQHLARKGGKRLVVTEG 144
Query: 132 EMDKLSMEEA-GFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
E+D +S+ +A VS+P+GA S+ + K+N+ +L+ +I+
Sbjct: 145 EIDAMSVHQALKTWPAVSIPNGAQSAAAAVKENLE----------------FLESYEKIV 188
Query: 189 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE- 247
DGD PGQ A+E AR + + P KDANE+L G +E+V+
Sbjct: 189 FMFDGDEPGQKAAQECARVLSPGKACIATLP-------LKDANEMLK---EGRTQELVQA 238
Query: 248 --NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTG 304
A Y G+ + +D +++ E GIS W ++N + Y GELT T
Sbjct: 239 FWEASEYRPDGIVSGKDVWEQA------VKQTEQGISYPWPSMNGITYGQRKGELTTWTA 292
Query: 305 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 364
GKS ++ + ++ + G+K +E V A+ L+ H+ KP S E
Sbjct: 293 GSGMGKSAFVREIEYDLLKQ-GYKVASIRLEENVGRTAKGLMGIHLNKPIHLPGQEVSEE 351
Query: 365 RMTVEEFEQ----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
M + FE G+ WL + F + E+D+L S +R+ +GL +D +
Sbjct: 352 DMRI-AFEATVGCGRFWLLDHFGSL--EDDNLMS-----------KMRYLAKGLGVD-FI 396
Query: 421 ELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH---NWVGEPP 471
LDH V E + ++T ++ + + ++H ++ + G
Sbjct: 397 ILDHISIVVSGMDTGSDERRVIDNLMTQLRSLVEESGVGMHLISHLKRADKKGHEDGAQI 456
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNR 530
+L + GS D I + RN+ ++ R VR ++N+ G G A++ Y++
Sbjct: 457 SLSQLRGSGAIAQLSDMVIGLERNQQAKSEDA-RNLTKVRVLKNRFSGETGIAAYVRYDK 515
Query: 531 VTGEYMDIV 539
TG ++
Sbjct: 516 DTGRLNEVA 524
>gi|403530941|ref|YP_006665470.1| phage-like protein [Bartonella quintana RM-11]
gi|403233012|gb|AFR26755.1| phage related protein [Bartonella quintana RM-11]
Length = 850
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 162/376 (43%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G + K+ ++ N +L+
Sbjct: 430 IVITEGEIDALSLAAYGY-PAVSVPFGG------------GRGGKHNWIENEFDHLESFE 476
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A E+A R+G RC RVR P+ KDAN+ L + +
Sbjct: 477 TIFLATDMDKPGEEAAREIANRLGLHRCHRVRLPR-------KDANDCLTAGVDAATIAA 529
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL +Y D++ + G + + LN P ELT+ +G
Sbjct: 530 AFSSAKSFAPEGLRRASEYKDQVTGLFWPEPEQHVGYTVPYPKLNGKLYFRPAELTLWSG 589
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 590 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 636
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ E E+ +L + LI E+ S+ +L++ R+G +ID L
Sbjct: 637 EQPKREMIERILDFLDD--GLILYEHVGKSSVDTLLNVFDYCRARYGCDQFIIDSLMRLG 694
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 695 ----IASDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDVPGTEDIKGASEIG 749
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 750 ANAFNIITIWRNRSLE 765
>gi|219125812|ref|XP_002183166.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405441|gb|EEC45384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 646
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 194/454 (42%), Gaps = 55/454 (12%)
Query: 96 KYRDFNKKFWQEKDTEKV---FYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPD 151
K R KK WQ D +G + E ++II+ EGE D +++ +A VS+P+
Sbjct: 232 KVRAVAKKSWQRLDPPGGGWGLFGFHTVPPEATEIILTEGEYDAMAVWQATGRPAVSLPN 291
Query: 152 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 211
G +++P E L+ ++IIL D D PGQ AE+ A+++G E
Sbjct: 292 GC------RSLPPE-----------VLPLLENFAKIILWMDNDGPGQEGAEQFAKKIGLE 334
Query: 212 RCWRVRWPKKN---DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 268
R + V+ K++ D KDAN+ L L L+ +V +A+ P + FRD +
Sbjct: 335 RTYIVKPGKQHVPEDAPLPKDANDAL--LQGLDLEAMVRDAQPVPHERILTFRDLRSSV- 391
Query: 269 AYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEH 324
H + + +L L N++ GE+T++TG SGK+ ++ + ++ E
Sbjct: 392 --LHEIIHPDKYVGVPMTSLPALTNIIKGFRRGEMTVLTGPTGSGKTTFLGQMSLDLAEQ 449
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G + S E K KL+++ ++P G A +E L F
Sbjct: 450 -GINMLWGSFEIKNTRLIHKLMQQFSREPL---PTGEQAVESKLEALADRFERLPFYFMK 505
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMV 443
+D + VLD AV + V +++D + + + T ++ Q + +
Sbjct: 506 FHGGSD----VDDVLDAMDYAVYVNDVEHIILDNMQFMISRNKNKTSTFDKFDVQDVAIE 561
Query: 444 K--RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAG 501
K +FA HV V HPR+ + ++ I GSA + D +++
Sbjct: 562 KFRKFATDKNVHVTLVVHPRKEQEDMKL--SMASIYGSAKATQEADTVLILQ-------- 611
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + + +N+ G +G L ++R+TG Y
Sbjct: 612 -TDGRRKYIEVKKNRFNGNLGHTPLHFDRLTGRY 644
>gi|224015275|ref|XP_002297295.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968040|gb|EED86397.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 729
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 120/483 (24%), Positives = 202/483 (41%), Gaps = 68/483 (14%)
Query: 80 VVIAFPYWRNGKLV--NCKYRDFNKKFWQEKDTEKVFYGLDD----IEGESDIIIVEGEM 133
+ + FP +G + K R KK WQ D +GL ++III EGE
Sbjct: 245 MCVTFPCSTHGPYIPRRIKVRSIEKKAWQRLDPPGGGFGLFGWHTVPHNATEIIITEGEF 304
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +++ +A VS+P+G +++P E + L+ + L D
Sbjct: 305 DAMAVYQATGRPAVSLPNGC------RSLPME-----------VLLLLENFDTVYLWMDN 347
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDV--DHFKDANEVLMYLGPGALKEVVENAEL 251
D PG+ AE AR++G ERC V+ K + KDANE L L + E++E A
Sbjct: 348 DGPGREGAEMFARKLGVERCLLVQPSGKRGAPPEPPKDANEAL--LTGWDINELLEEASE 405
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPN 307
P + F D D++ H E T +L +++ GELT++TG
Sbjct: 406 LPHERILKFSDLRDQV---IHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTG 462
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMT 367
SGK+ ++ ++ E G + S E K KLL++++K G + + ++
Sbjct: 463 SGKTTFLGQTSLDLVEQ-GINVLWGSFEIKNTRLMHKLLQQYMKDVL---PVGLAEKDLS 518
Query: 368 VEEFEQGKAWLSNTFSLIRCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVID 417
VEE + L++ + + +SLP + VLD + A H V +++D
Sbjct: 519 VEERQNAMTALTS----LADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILD 574
Query: 418 PYNELDHQRPVSQTETEY-----VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 472
+ ++ V + + + ++FA + HV V HPR+ G
Sbjct: 575 NMQFMISRQSVEGKGSSFDKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDE--GAKLG 632
Query: 473 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 532
+ GSA + D +++ + R V V+K N+ GTIG + L + R +
Sbjct: 633 MSSFYGSAKATQEADTVLILQSDG-------KRKFVDVKK--NRFDGTIGHSPLYFQRKS 683
Query: 533 GEY 535
G Y
Sbjct: 684 GRY 686
>gi|347736360|ref|ZP_08869021.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
gi|346920183|gb|EGY01393.1| replication protein / DNA helicase [Azospirillum amazonense Y2]
Length = 613
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 112/452 (24%), Positives = 184/452 (40%), Gaps = 54/452 (11%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVI--AFPYWRNGKLVNCKYRDFN------KKFWQEKD 109
ERLISA+ +R R+ ++ G +V+ P +G L KY + K E
Sbjct: 129 ERLISADAIRAFRIGEQ--GRTIVLPSVLP---DGALAGVKYLGVDRSTEGRKVIRVEGG 183
Query: 110 TEKVFYGLDDIEGES--DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
E V +G + + + I EGE+D ++ + G +SVP G +
Sbjct: 184 CEPVLFGWQAVSNANLRECTITEGEIDAMTAWDYGLPTPLSVPFGGG------------K 231
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
K Q+L L Q I LA D D G A A E+ARR+G RC RV P K D++
Sbjct: 232 GAKQQWLEAEYDRLAQFEVIYLALDCDSEGDAAAAEIARRLGEHRCRRVLLPHK-DLNAC 290
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
+ AN + ++ ++A L D++ + TS G WR
Sbjct: 291 RQAN-----VSAEDIRRHFDSARTADPEELIRAGALADDVVDLFWPTSESRQGYRLPWRK 345
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
+ PGELTI TG GKS+ + + ++ G + + S+E LL+
Sbjct: 346 AGDKLRFRPGELTIWTGGTGEGKSQVLSHAVVDMASQ-GARACIASLEMA----PAMLLK 400
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ +K+ G+ +R T + WL L + + ++++ + A
Sbjct: 401 RAVKQ-------AGNNDRPTEARIREVMMWLDTWLLLFGQVGKA--GVTRLIEVFEYARR 451
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ---LH 464
R+G V+D L + + V +++T +A HV VAH R+ +
Sbjct: 452 RYGCDVFVVDSLMRLGVGSEDYEGQERAVFELVT----WAVAKGVHVHLVAHARKSDRSN 507
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496
G+ P D+ G++ + N I + RNR
Sbjct: 508 GQAGQVPGSEDVKGTSEIASNAANIIGVWRNR 539
>gi|440794402|gb|ELR15563.1| mitochondrial helicase twinkle, putative [Acanthamoeba castellanii
str. Neff]
Length = 766
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 214/505 (42%), Gaps = 67/505 (13%)
Query: 58 ERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 113
+R +S E +R+ +V ++ E + FP+ R + + K +++
Sbjct: 262 QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNSIRRLKIRSIKNKANQRL 321
Query: 114 --------FYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
F+G + ++ +I+I EGE D +++ +A L +S+P+GA S+ + +P
Sbjct: 322 TPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA-HSLPVELLPR 380
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
E+ K YLW D D PGQ A + A+++G +RC VR K+ D
Sbjct: 381 LERFEKI-YLW---------------MDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDP 423
Query: 225 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GIST 283
+ KDAN+ L L +++ A P + +F+D DE+ Y + S DE G+ +
Sbjct: 424 EGPKDANDALR--AGKDLNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPS 479
Query: 284 GWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ L +L GELT+ TG GK+ + L + G + + + E K
Sbjct: 480 --KMFPSLTKILKGHRKGELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNT 536
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
A+K+L ++ K E +R + E +A+ +R + S+ VL
Sbjct: 537 YLAQKMLLQYAGKNLAELQ-----DRAQWD--EASRAFSDLPLYWMRFHGST--SVDQVL 587
Query: 400 DLAKAAVLRHGVRGLVIDPYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
D AV H V +V+D + + + + + + L +RFA H
Sbjct: 588 DAMDYAVYVHDVEHVVLDNLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVH 647
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513
+ V HPR+ + P N+ + GS + DN +++ N+ + +
Sbjct: 648 ITLVIHPRKTED--DRPLNVASVFGSVKATQEADNVLILQYNKGED-------WKWLEVA 698
Query: 514 RNKVVGTIGEAFLSYNRVTGEYMDI 538
+N+ G +G L +N+ Y ++
Sbjct: 699 KNRFDGELGPIALQFNKRNKSYREM 723
>gi|70672402|gb|AAZ06404.1| mitochondrial helicase twinkle [Acanthamoeba castellanii]
Length = 765
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 214/505 (42%), Gaps = 67/505 (13%)
Query: 58 ERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 113
+R +S E +R+ +V ++ E + FP+ R + + K +++
Sbjct: 262 QRHLSEEVIRKYKVGATKYAFGGDSEQCVTFPWIDADAEGRNSIRRLKIRSIKNKANQRL 321
Query: 114 --------FYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
F+G + ++ +I+I EGE D +++ +A L +S+P+GA S+ + +P
Sbjct: 322 TPAGGQWGFFGWHTVPADAKEIVITEGEFDAMAVYQATGLPAISLPNGA-HSLPVELLPR 380
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
E+ K YLW D D PGQ A + A+++G +RC VR K+ D
Sbjct: 381 LERFEKI-YLW---------------MDDDIPGQEGAAKFAQKLGIKRCLLVR-TKQGDP 423
Query: 225 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GIST 283
+ KDAN+ L L +++ A P + +F+D DE+ Y + S DE G+ +
Sbjct: 424 EGPKDANDALR--AGKDLNAILKKAGRTPHQQVISFQDIADEV--YRNICSPDELAGVPS 479
Query: 284 GWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ L +L GELT+ TG GK+ + L + G + + + E K
Sbjct: 480 --KMFPSLTKILKGHRKGELTVFTGPTGVGKTTLLSQLSLDFAMQ-GVRTLWGNFEIKNT 536
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
A+K+L ++ K E +R + E +A+ +R + S+ VL
Sbjct: 537 YLAQKMLLQYAGKNLAELQ-----DRAQWD--EASRAFSDLPLYWMRFHGST--SVDQVL 587
Query: 400 DLAKAAVLRHGVRGLVIDPYNEL------DHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
D AV H V +V+D + + + + + + L +RFA H
Sbjct: 588 DAMDYAVYVHDVEHVVLDNLQFMLSGQAWGQEGVAAGNKFDIQDRALEEFRRFASTKNVH 647
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513
+ V HPR+ + P N+ + GS + DN +++ N+ + +
Sbjct: 648 ITLVIHPRKTED--DRPLNVASVFGSVKATQEADNVLILQYNKGED-------WKWLEVA 698
Query: 514 RNKVVGTIGEAFLSYNRVTGEYMDI 538
+N+ G +G L +N+ Y ++
Sbjct: 699 KNRFDGELGPIALQFNKRNKSYREM 723
>gi|221328670|ref|YP_002533512.1| DNA replication protein [Salmonella phage epsilon34]
gi|193244738|gb|ACF16677.1| DNA replication protein [Salmonella phage epsilon34]
Length = 626
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 201/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|381167564|ref|ZP_09876771.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
gi|380683318|emb|CCG41583.1| Phage related helicase [Phaeospirillum molischianum DSM 120]
Length = 611
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 195/464 (42%), Gaps = 55/464 (11%)
Query: 47 PLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFP-YWRNGKLVNCKYRDFNKKFW 105
P + L ER +S + +R RV ++ I FP +G L K+ ++
Sbjct: 118 PKSDVLAYLTGERGLSEDAVRAYRVGEQGR----TIVFPSLLPDGTLAFVKFLGIDRSPE 173
Query: 106 QEKDT------EKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 158
+K T E V +G I+ + +I+I EGE+D L+ + G + +SVP G
Sbjct: 174 GKKITRVEAGCEPVLFGWQAIDRNAREIVITEGEIDALTAWDFG-IPALSVPFGGGIGAK 232
Query: 159 KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW 218
+ + SE + L Q I LA D D G+ A E+A R+GR RC RV
Sbjct: 233 QAWIESEFE------------RLGQFEVIYLALDNDREGELAAGEIANRLGRHRCRRVIL 280
Query: 219 PKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE 278
P+K D++ + A L ++E A L ++ +++ + T E
Sbjct: 281 PRK-DLNECRKAG-----LSAEEIRECFAAARTLDPPELRRAGEFTEDVLRLFWPTDDQE 334
Query: 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G + + + PGEL+I TG +GKS+ + + + + G + L S+E
Sbjct: 335 PGYRLPFAKIGDKLVFRPGELSIWTGPSGAGKSQVLSHALVAMGDQ-GARVCLASLEMAP 393
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSI 395
R+ ++++++ G+ +R T WL F+L+ S+
Sbjct: 394 RQSLKRMVKQ-----------AGNVDRPTEPFLRVVMDWLDGWCWVFALV-----GKVSV 437
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+L++ + A R+G VID L + + + V +++T +A A HV
Sbjct: 438 AKLLEIFEYARARYGCDVFVIDSLMRLGIGSEDYEGQEKAVFEIVT----WAVEKAVHVH 493
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
VAH R+ G P L D+ G++ N + + RNR E
Sbjct: 494 LVAHARKADRASGGVPELEDVKGASEIGANAFNILGVWRNRKLE 537
>gi|255252730|ref|YP_003090265.1| DNA primase [Salmonella phage c341]
gi|223697703|gb|ACN18327.1| DNA primase [Salmonella phage g341c]
Length = 626
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 201/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|49474650|ref|YP_032692.1| phage related protein [Bartonella quintana str. Toulouse]
gi|49240154|emb|CAF26610.1| phage related protein [Bartonella quintana str. Toulouse]
Length = 786
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 161/376 (42%), Gaps = 42/376 (11%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
I+I EGE+D LS+ G+ VSVP G S K+ ++ N +L+
Sbjct: 366 IVITEGEIDALSLAAYGY-PAVSVPFGGGSG------------GKHNWIENEFDHLESFE 412
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKE 244
I LATD D PG+ A +A R+G RC RVR P+ KDAN+ L + +
Sbjct: 413 TIFLATDMDKPGEEAARAIANRLGLHRCHRVRLPR-------KDANDCLTAGVDAATIAA 465
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+A+ + GL +Y D++ + G + + LN P ELT+ +G
Sbjct: 466 AFSSAKSFAPEGLRRASEYKDQVIGLFWPEPEQHVGYTVPYPKLNGKLYFRPAELTLWSG 525
Query: 305 VPNSGKSEWIDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
+GKS+ + I + I + + + L S+E K + R+L ++ G
Sbjct: 526 ASGAGKSQLLSDCIPHWIAQKS--RLCLASLEMKGEQSLRRLTKQT-----------GGL 572
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
E+ E E+ +L + LI E+ S+ +L++ R+G +ID L
Sbjct: 573 EQPKREMIERILDFLDD--GLILYEHVGKSSVDTLLNVFDYCRARYGCDQFIIDSLMRLG 630
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
++ + Q + + +A +A H+ VAH R+ + P DI G++
Sbjct: 631 ----IASDDYTGQEQAVYKMVDWAVLNAVHIHLVAHARK-GGLDKDVPGTEDIKGASEIG 685
Query: 484 NKCDNGIVIHRNRDPE 499
N I I RNR E
Sbjct: 686 ANAFNIITIWRNRSLE 701
>gi|300919987|ref|ZP_07136446.1| conserved hypothetical protein [Escherichia coli MS 115-1]
gi|300412934|gb|EFJ96244.1| conserved hypothetical protein [Escherichia coli MS 115-1]
Length = 626
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/499 (23%), Positives = 205/499 (41%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + H G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRH-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|224005435|ref|XP_002291678.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972197|gb|EED90529.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 610
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/465 (25%), Positives = 195/465 (41%), Gaps = 66/465 (14%)
Query: 96 KYRDFNKKFWQEKDTEKVFYGLDD----IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD 151
K R KK WQ D +GL ++III EGE D +++ +A VS+P+
Sbjct: 166 KVRSIEKKAWQRLDPPGGGFGLFGWHTVPHDATEIIITEGEFDAMAVYQATGRPAVSLPN 225
Query: 152 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 211
G +++P E + L+ + L D D PG+ AE AR++G E
Sbjct: 226 GC------RSLPME-----------VLLLLENFDTVYLWMDNDGPGREGAEMFARKLGVE 268
Query: 212 RCWRVRWPKKNDV--DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDA 269
RC V+ K + KDANE L L + E++E A P + F D D++
Sbjct: 269 RCLLVQPSGKRGAPPEPPKDANEAL--LTGWDINELLEEASELPHERILKFSDLRDQV-- 324
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEHA 325
H E T +L +++ GELT++TG SGK+ ++ ++ E
Sbjct: 325 -IHEIINPEKYRGTPIPSLPGFTSLIKGFRRGELTVLTGPTGSGKTTFLGQTSLDLVEQ- 382
Query: 326 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 385
G + S E K KLL++++K G + + ++VEE + L++ +
Sbjct: 383 GINVLWGSFEIKNTRLMHKLLQQYMKDVL---PVGLAEKDLSVEERQNAMTALTS----L 435
Query: 386 RCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
+ +SLP + VLD + A H V +++D + ++ V + +
Sbjct: 436 ADKFESLPMYFMKFHGGSDVDDVLDAMEYAAYVHDVEHIILDNMQFMISRQSVEGKGSSF 495
Query: 436 -----VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ ++FA + HV V HPR+ G + GSA + D +
Sbjct: 496 DKFDMQDIAIEKFRKFATEYNVHVTLVVHPRKEDE--GAKLGMSSFYGSAKATQEADTVL 553
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
++ + R V V+K N+ GTIG + L + R +G Y
Sbjct: 554 ILQSDG-------KRKFVDVKK--NRFDGTIGHSPLYFQRKSGRY 589
>gi|407894501|ref|ZP_11153531.1| hypothetical protein Dmas2_11064 [Diplorickettsia massiliensis 20B]
Length = 621
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 189/451 (41%), Gaps = 54/451 (11%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-----KKFWQEKDTEK 112
ER ++ +T+ ++ +K G +V FPYWR+ ++V KY + K+ EKD E
Sbjct: 135 ERKLTEKTIEDFKIKEK--GRNIV--FPYWRDNEIVFVKYLSIDRVNGKKQISVEKDCEP 190
Query: 113 VFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
+G I + + + EGE+D +++ + G + +SVP G + K+
Sbjct: 191 CLFGWHLIPNNARSVTLCEGEIDAMTLHQYG-IAVLSVPFGGGTG------------NKH 237
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
++L L +I L D D G++ A +L R+G RC V P KDAN
Sbjct: 238 RWLDYEFDRLSVFDKIYLCFDNDEEGKSAATDLIARLGAHRCRLVNLPH-------KDAN 290
Query: 232 EVLMY-LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
L + P ++ + ++ L + DE+ ++ GI W+ +
Sbjct: 291 ACLQAEMTPLTMRSLFNESKTLDPQELKQASSFVDEVINEFYPPDNQPLGIYPPWQKAKD 350
Query: 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
EL+I TG GKS+++ +I + + + + S+E K ++LL +
Sbjct: 351 KILFRQEELSIWTGTNGHGKSQFLGHIILSAMKQDA-RVCIASLELK----PKRLLYRLT 405
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLR 408
++ E+ T W + + D L + K +L++ A R
Sbjct: 406 RQ-------AAGLEKPTEGYIRAIHEWYDDRLLIF----DLLGTAKADRLLEVFLYAWKR 454
Query: 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG 468
+ + VID + +LD +S+ + + + + F + CH+ V HPR+ +
Sbjct: 455 YRINMFVIDSFLKLD----ISEDDYTAQKRFIEKLCDFKNQYPCHIHLVVHPRKNADEHY 510
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+P L D G+ + DN + RN+ E
Sbjct: 511 QPGKL-DNKGTGAISDLADNCFTVWRNKKKE 540
>gi|416596989|ref|ZP_11781804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322678748|gb|EFY74804.1| hypothetical protein SEEM867_09762 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
Length = 626
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|386623412|ref|YP_006143140.1| gp61 [Escherichia coli O7:K1 str. CE10]
gi|349737149|gb|AEQ11855.1| gp61 [Escherichia coli O7:K1 str. CE10]
Length = 610
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 205/499 (41%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G ++++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVREVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|417754549|ref|ZP_12402644.1| DNA replication protein [Escherichia coli DEC2B]
gi|419000946|ref|ZP_13548502.1| DNA replication protein [Escherichia coli DEC1B]
gi|419006467|ref|ZP_13553921.1| DNA replication protein [Escherichia coli DEC1C]
gi|419022410|ref|ZP_13569657.1| DNA replication protein [Escherichia coli DEC2A]
gi|419027743|ref|ZP_13574938.1| DNA replication protein [Escherichia coli DEC2C]
gi|419033501|ref|ZP_13580599.1| DNA replication protein [Escherichia coli DEC2D]
gi|377850349|gb|EHU15314.1| DNA replication protein [Escherichia coli DEC1C]
gi|377853082|gb|EHU17988.1| DNA replication protein [Escherichia coli DEC1B]
gi|377868729|gb|EHU33460.1| DNA replication protein [Escherichia coli DEC2A]
gi|377879495|gb|EHU44068.1| DNA replication protein [Escherichia coli DEC2B]
gi|377883920|gb|EHU48438.1| DNA replication protein [Escherichia coli DEC2D]
gi|377884517|gb|EHU49027.1| DNA replication protein [Escherichia coli DEC2C]
Length = 561
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 307
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 308 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 358
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 359 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 410
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 411 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 465
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 466 LFIIWRNKARERA-LQRVQ 483
>gi|418997890|ref|ZP_13545482.1| DNA replication protein [Escherichia coli DEC1A]
gi|419038543|ref|ZP_13585600.1| DNA replication protein [Escherichia coli DEC2E]
gi|377842929|gb|EHU07976.1| DNA replication protein [Escherichia coli DEC1A]
gi|377897872|gb|EHU62243.1| DNA replication protein [Escherichia coli DEC2E]
Length = 610
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|238912290|ref|ZP_04656127.1| hypothetical protein SentesTe_14311 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 626
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 115/497 (23%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T L+ Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLD--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ DG
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDG 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GIKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|416898467|ref|ZP_11928013.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|417629649|ref|ZP_12279886.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
gi|424816777|ref|ZP_18241928.1| prophage protein [Escherichia fergusonii ECD227]
gi|325497797|gb|EGC95656.1| prophage protein [Escherichia fergusonii ECD227]
gi|327251981|gb|EGE63653.1| hypothetical protein ECSTEC7V_2822 [Escherichia coli STEC_7v]
gi|345372396|gb|EGX04360.1| hypothetical protein ECSTECMHI813_2572 [Escherichia coli
STEC_MHI813]
Length = 610
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|237704866|ref|ZP_04535347.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|419950691|ref|ZP_14466901.1| putative replication protein [Escherichia coli CUMT8]
gi|422357968|ref|ZP_16438629.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|422837566|ref|ZP_16885539.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|428781787|ref|YP_007111555.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|432755197|ref|ZP_19989746.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|432788267|ref|ZP_20022398.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|432821716|ref|ZP_20055407.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|432827853|ref|ZP_20061503.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
gi|226901232|gb|EEH87491.1| prophage protein [Escherichia sp. 3_2_53FAA]
gi|315288260|gb|EFU47659.1| conserved hypothetical protein [Escherichia coli MS 110-3]
gi|371610475|gb|EHN99003.1| hypothetical protein ESPG_00225 [Escherichia coli H397]
gi|388416406|gb|EIL76296.1| putative replication protein [Escherichia coli CUMT8]
gi|392506175|gb|AFM76466.1| hypothetical protein mEp043_055 [Enterobacteria phage mEp043 c-1]
gi|431301926|gb|ELF91123.1| hypothetical protein WEA_02182 [Escherichia coli KTE22]
gi|431336834|gb|ELG23935.1| hypothetical protein A1U3_02388 [Escherichia coli KTE65]
gi|431367368|gb|ELG53845.1| hypothetical protein A1Y5_03321 [Escherichia coli KTE118]
gi|431371746|gb|ELG57451.1| hypothetical protein A1YA_04578 [Escherichia coli KTE123]
Length = 626
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|422352041|ref|ZP_16432842.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
gi|324019905|gb|EGB89124.1| hypothetical protein HMPREF9542_01385 [Escherichia coli MS 117-3]
Length = 626
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|215485814|ref|YP_002328245.1| replication protein [Escherichia coli O127:H6 str. E2348/69]
gi|215263886|emb|CAS08224.1| predicted replication protein [Escherichia coli O127:H6 str.
E2348/69]
Length = 626
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|421834245|ref|ZP_16269323.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
gi|409744322|gb|EKN42936.1| TOPRIM domain protein [Clostridium botulinum CFSAN001627]
Length = 618
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 132/581 (22%), Positives = 229/581 (39%), Gaps = 93/581 (16%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSS-----LKKFSK-MKTIREITEDSLELEPLGNELRAY 55
C R KCG G+ L + Q+ LK+ +K K + ++ ++ L +++ Y
Sbjct: 55 CLRGKCGESGTFKELAEKYGEQAQYYLDWLKENNKEYKQTAQYSQPKYKINSLSDKVVQY 114
Query: 56 FAERLISAETLRRNRVMQ---KRHGHEVVIAFPYWRNGKLVNCKYRDFNK---------- 102
F +R IS +TL + V K+ E + F ++ N KLV K R K
Sbjct: 115 FNKRGISKKTLEKVGVKSFYFKKINEEFAV-FQFFENEKLVMNKMRLLRKPQIKKDGKKE 173
Query: 103 -KFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161
K W+E + V + + +I+ +I+ EG +D LS+ E N S+P G
Sbjct: 174 LKEWKESGGKHVLWNMQNIDKNKPVILCEGMVDGLSVIECEVENVTSIPSGTRDLT---- 229
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
++ NC ++++ I+ D D G L L + G +C V+
Sbjct: 230 -----------WIDNCYDWIQEIKEWIIYVDNDVAGDELKNNLLMKFGYSKCRVVK---- 274
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 281
KDAN+ L LG + + ++NA+ + GL + + D ID
Sbjct: 275 ---HELKDANDELNVLGKEYIIDAIKNAKYEDVKGLVDISN-VDIIDLSKLERC------ 324
Query: 282 STGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
S+ RA+++ L LT+ TG SGKS I + FV
Sbjct: 325 SSSIRAIDKYCGGLTFPNLTVWTGKRGSGKSTVASQCITAAVDQGYNAFVYTG--ELAAG 382
Query: 341 HARKLLEKHIKKP---------FFEANYGGSAERMTVEEF-EQGKAWLSNTFSLIRCEND 390
H + L + P + + + E + +E +Q W+S L +++
Sbjct: 383 HFKLWLYSQMAGPENIDTVTYRYEQTDMERPDEYIPKKEIVQQIDNWISGKLKLY--DDN 440
Query: 391 SLPSIKWVLDLAKAAVLRHGVRGLVID-----PYNELDHQRPVSQTETEYVSQMLTMVKR 445
+ ++ L + + R+ R +ID +N + R ++Q S + +++
Sbjct: 441 NTNKEDEIIKLMEESYKRYNTRVFLIDNLMTVKFNSNSNGRFIAQ------SDFIDRLRQ 494
Query: 446 FAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD----PEAG 501
FA + +V V HPR+ G+ + D+ GS N N I R ++
Sbjct: 495 FALQYRVNVNVVVHPRKTQ--AGKEVDSDDVGGSGDITNAAFNVYWISRIKNDDDLDFDD 552
Query: 502 PIDRVQV-CVRKV---RNKVVGTIGEAFLSYNRVTGEYMDI 538
PI+R V C K+ +N+ + N+V G DI
Sbjct: 553 PIERQLVGCQSKIDILKNRYYSVV-------NKVGGMKFDI 586
>gi|298381536|ref|ZP_06991135.1| conserved hypothetical protein [Escherichia coli FVEC1302]
gi|298278978|gb|EFI20492.1| conserved hypothetical protein [Escherichia coli FVEC1302]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|191165477|ref|ZP_03027318.1| gp61 [Escherichia coli B7A]
gi|190904400|gb|EDV64108.1| gp61 [Escherichia coli B7A]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/499 (22%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|432386191|ref|ZP_19629087.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
gi|430909112|gb|ELC30497.1| hypothetical protein WCY_01439 [Escherichia coli KTE16]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|301019525|ref|ZP_07183691.1| conserved hypothetical protein [Escherichia coli MS 196-1]
gi|299882176|gb|EFI90387.1| conserved hypothetical protein [Escherichia coli MS 196-1]
Length = 610
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|293446711|ref|ZP_06663133.1| replication protein [Escherichia coli B088]
gi|291323541|gb|EFE62969.1| replication protein [Escherichia coli B088]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|293410741|ref|ZP_06654317.1| conserved hypothetical protein [Escherichia coli B354]
gi|291471209|gb|EFF13693.1| conserved hypothetical protein [Escherichia coli B354]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/496 (22%), Positives = 203/496 (40%), Gaps = 66/496 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKP-----GILLKRLTRQATCCKIPPVLEIDSAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ W+ + + ++++ A R+G++ +ID +
Sbjct: 427 YDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F HV V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQ 507
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQ 548
>gi|417537395|ref|ZP_12190297.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
gi|353668512|gb|EHD05676.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Wandsworth str. A4-580]
Length = 626
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 113/504 (22%), Positives = 203/504 (40%), Gaps = 69/504 (13%)
Query: 19 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 76
+ R + + + K R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARREKRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 77 GHEVVIA--FPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 128
G + A FPY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELSALVFPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 129 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 189 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 247
++ D D G+ A E+A R+G RC V P +KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIG 310
Query: 248 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 306
A + L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV
Sbjct: 311 TASYFDPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVN 367
Query: 307 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 363
GK+E + + G K + S+E K ++L + P E +
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID----- 421
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
+ +F + W+ + + ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCG 470
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+ +V + F HV V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 484 NKCDNGIVIHRNRDPEAGPIDRVQ 507
+ DN +I RN+ E + RVQ
Sbjct: 526 DLTDNLFIIWRNKARERA-LQRVQ 548
>gi|419260312|ref|ZP_13802747.1| DNA replication protein [Escherichia coli DEC10B]
gi|378110998|gb|EHW72588.1| DNA replication protein [Escherichia coli DEC10B]
Length = 610
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWRALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 357 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 407
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 408 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 459
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 460 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 514
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 515 LFIIWRNKARERA-LQRVQ 532
>gi|419924549|ref|ZP_14442437.1| putative replication protein [Escherichia coli 541-15]
gi|388389923|gb|EIL51432.1| putative replication protein [Escherichia coli 541-15]
Length = 630
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/496 (23%), Positives = 203/496 (40%), Gaps = 66/496 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 108 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 159
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 160 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 219
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 220 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 266
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 267 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 319
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 320 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 376
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 377 EVVGHMALEAMRQ-GVKTCIASLELKP-----GILLKRLTRQATCCKIPPVLEIDSAFKF 430
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ W+ + + ++++ A R+G++ +ID +
Sbjct: 431 YDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDDYNG 482
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F HV V H R+ + +P D+ GS + DN +
Sbjct: 483 QKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 537
Query: 492 IHRNRDPEAGPIDRVQ 507
I RN+ E + RVQ
Sbjct: 538 IWRNKARERA-LQRVQ 552
>gi|300898217|ref|ZP_07116573.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|422805050|ref|ZP_16853482.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
gi|300358094|gb|EFJ73964.1| conserved hypothetical protein [Escherichia coli MS 198-1]
gi|324114078|gb|EGC08051.1| hypothetical protein ERIG_01192 [Escherichia fergusonii B253]
Length = 626
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|432415722|ref|ZP_19658347.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
gi|430943046|gb|ELC63175.1| hypothetical protein WGI_01230 [Escherichia coli KTE44]
Length = 626
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 204/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|399528819|ref|YP_006560867.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
gi|392293168|gb|AFM54449.1| DNA primase/helicase [Salmonella phage vB_SosS_Oslo]
Length = 626
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVAEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D ++A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTVNAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 373 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 426
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 427 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 478
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 479 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 533
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 534 IWRNKARERA-LQRVQA 549
>gi|417516209|ref|ZP_12179150.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353654777|gb|EHC95968.1| DNA primase/helicase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 561
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 114/497 (22%), Positives = 200/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K +R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 250
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D ++A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTVNAFYGK---QQYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 307
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 308 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 361
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 362 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 413
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 414 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 468
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 469 IWRNKARERA-LQRVQA 484
>gi|194738223|ref|YP_002113588.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
gi|194713725|gb|ACF92946.1| gp61 [Salmonella enterica subsp. enterica serovar Schwarzengrund
str. CVM19633]
Length = 610
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 116/497 (23%), Positives = 199/497 (40%), Gaps = 66/497 (13%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
K+FS+ K R +T LE Y R IS E +R V+ + +G +
Sbjct: 88 KRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWNGEREL 139
Query: 82 IA--FPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A FPY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 SALVFPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G + +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-IQALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W L + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYHDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVNGHGKT 356
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
E + + G K + S+E K +L K + + E + +F
Sbjct: 357 EVVGHMALEAMRQ-GVKTCVASLELKP-----GILLKRLTRQSTCCKMPPVLEIESAFKF 410
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ WL + E ++++ A R+G++ +ID +
Sbjct: 411 YDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCGIGDDDYNG 462
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +V + F H+ V H R+ + +P D+ GS + DN +
Sbjct: 463 QKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDNLFI 517
Query: 492 IHRNRDPEAGPIDRVQV 508
I RN+ E + RVQ
Sbjct: 518 IWRNKARERA-LQRVQA 533
>gi|224583090|ref|YP_002636888.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467617|gb|ACN45447.1| hypothetical protein SPC_1284 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 626
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 106/466 (22%), Positives = 189/466 (40%), Gaps = 55/466 (11%)
Query: 55 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFW 105
Y R IS E ++R V+ + +G + + PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIM 186
Query: 106 QEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
E D E +G ++ G +++ EGE+D +S + G + +SVP G ++ +
Sbjct: 187 AEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEF 245
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
E + L + + ++ DGD G+ A E+A R+G RC V P
Sbjct: 246 EYHN------------LDRFEEVFISMDGDDVGREAAREIASRLGEHRCRLVTLPH---- 289
Query: 225 DHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGIS 282
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++ +
Sbjct: 290 ---KDINECLMNGVTEDEIWQYIGTAAYFDPEELYSAREFYHDTINAFYGKQ---QYLFN 343
Query: 283 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342
W L + ELT+V GV GK+E + + G K + S+E K
Sbjct: 344 PPWETLAYNFQFREAELTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCVASLELKP---- 398
Query: 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 402
+L K + + E + +F + WL + E ++++
Sbjct: 399 -GILLKRLTRQSTCCKMPPVLEIESAFKFYDDRLWLFGLTGTAKAER--------LIEIF 449
Query: 403 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
A R+G++ +ID + + +V + F H+ V H R+
Sbjct: 450 TYARRRYGIQLFIIDSLMKCGIGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSRK 505
Query: 463 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 508
+ +P D+ GS + DN +I RN+ E + RVQ
Sbjct: 506 -GDSEEKPTGKMDVKGSGAITDLTDNLFIIWRNKARERA-LQRVQA 549
>gi|62362274|ref|YP_224199.1| gp61 [Enterobacteria phage ES18]
gi|58339117|gb|AAW70532.1| gp61 [Enterobacteria phage ES18]
Length = 626
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 112/505 (22%), Positives = 199/505 (39%), Gaps = 69/505 (13%)
Query: 19 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 76
+ R + + + K +R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARREKRFSRPDRKKIVRYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 77 GHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 128
G + + PY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELNALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 129 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 189 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 247
++ D D G+ A E+A R+G RC V P KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIG 310
Query: 248 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 306
A + L++ R+++ D I+A+Y + ++ + W L + ELT+V GV
Sbjct: 311 TASYFDPEELYSAREFYQDTINAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVN 367
Query: 307 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 363
GK+E + + G K + S+E K ++L + P E
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCVASLELKPGVLLKRLTRQSTCCKTPPVLEIE----- 421
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
+ +F + WL + E ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCG 470
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+ +V + F H+ V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDSLCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 484 NKCDNGIVIHRNRDPEAGPIDRVQV 508
+ DN +I RN+ E + RVQ
Sbjct: 526 DLTDNLFIIWRNKARERA-LQRVQA 549
>gi|300936072|ref|ZP_07151016.1| conserved hypothetical protein [Escherichia coli MS 21-1]
gi|300458765|gb|EFK22258.1| conserved hypothetical protein [Escherichia coli MS 21-1]
Length = 626
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 115/499 (23%), Positives = 203/499 (40%), Gaps = 72/499 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 82 IAF--PYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
A PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------CKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 423
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 424 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 475
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 476 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 530
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 531 LFIIWRNKARERA-LQRVQ 548
>gi|451988633|gb|AGF91110.1| primase/helicase [Synechococcus phage S-CBP2]
Length = 528
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 197/474 (41%), Gaps = 61/474 (12%)
Query: 81 VIAFPYW-RNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
V+ FPY ++G++V K RD K F W K+ EK +G + G ++I EGEMD LS+
Sbjct: 86 VLRFPYTDQSGRVVGAKERDKEKNFRWIGKNVEKRLFGQNLFGGGKRLVITEGEMDALSV 145
Query: 139 EEAGFL-NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPG 197
EA VS+ GA + Y+ L N + I+L D D PG
Sbjct: 146 WEAQPKWPVVSIYSGAAGA--------------YKDLQNQLSFCLSFDEIVLLFDNDEPG 191
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
Q + + A+ ++ K + +KDA+E L A+++ + NA Y +
Sbjct: 192 QEASVKCAQLFPPDKV------KIGSMGAYKDASEALQAGDGEAIRQAIWNAAPYSPKTI 245
Query: 258 FNFRDYFDEIDAYYHRTSGDEFGISTGW--RALNELYNVLP-GELTIVTGVPNSGKSEWI 314
+ R FD + G W LN + L GEL VT GKS +
Sbjct: 246 IDGRSLFDLLRRPM-------VGRDADWPYDGLNSVTGGLRLGELCTVTAGSGVGKSTFC 298
Query: 315 -DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+A +N+ G+ ++E ++ +L+ KP N E + F++
Sbjct: 299 GEAAQALVNQ--GFSVGYIALEESIQRTGLRLMTVEANKPLHLDNT--VDEDVFRSAFQK 354
Query: 374 ----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
G+ +L + F + P + +L+ + V V+ +++D + L S
Sbjct: 355 SVGSGRVFLRDGFGSVD------PDV--ILNDIRFMVKARDVKFVILDHLSIL-LSGNAS 405
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINK 485
E + + +T ++ F + + ++H R+LHN G +L + GS +
Sbjct: 406 DDERKMIDVTMTKLRSFVEETRVGLILISHLRRLHNDKGHEDGGQVSLSHLRGSHSIVQL 465
Query: 486 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYMDI 538
D + I RN D + +R ++N+ G GEA L YN+ TG ++
Sbjct: 466 SDLVVSIERN----LASGDNTSL-LRVLKNRFNGQTGEAGVLQYNKETGRMREL 514
>gi|225574757|ref|ZP_03783367.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
gi|225038028|gb|EEG48274.1| hypothetical protein RUMHYD_02834 [Blautia hydrogenotrophica DSM
10507]
Length = 606
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 125/548 (22%), Positives = 237/548 (43%), Gaps = 79/548 (14%)
Query: 2 CFRAKCGWKGSTSALV-DNNRSQSSL--KKFSKMKTIREI-TEDSLELEPLGNELRAYFA 57
C RA C G+ L D N S + + +S K R I ++ + +P + Y
Sbjct: 60 CLRASCDAHGNMITLARDFNFSLGTEVDEYYSPKKRFRNIHRKEKPQTKPAAVK---YLE 116
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYR--DFNK-----KFWQEKD 109
R IS ET +R + ++ +E ++ FP++ N L KYR DF+K K W E++
Sbjct: 117 SRGISEETAKRYNITTQKD-NENILVFPFYDENNILQFVKYRKTDFDKDRDKNKEWCERN 175
Query: 110 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
+ + +G++ + E +++ EG++D LS EAG N VSVP+GA
Sbjct: 176 CKPILFGMNHCDPEQPTLVLTEGQIDSLSCAEAGIKNAVSVPNGAKG------------- 222
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+ ++ C +L + + +++ D + +L E+ +R V+ +++D K
Sbjct: 223 --FTWIPYCWDFLSRFANLVIFGDFEHEAISLLPEMQKRFH----GTVKHIREDDYKDCK 276
Query: 229 DANEVLMYLGPGALKEVVENA------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 282
DANE+L GP L++ VENA ++ P+ + +++A I
Sbjct: 277 DANEILQKYGPEYLQKCVENAVPVSNPKIKPLEEVKRM-----DLNAMEK--------IR 323
Query: 283 TGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
+G L++L G++ +VTG GKS + AG+ S E + +
Sbjct: 324 SGIYGLDKLTGGFYFGQVILVTGERGFGKSTLVSQFGTQAIA-AGYPTFFYSGE-LMDWY 381
Query: 342 ARKLLEKHIKKP----FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
+ +E I ++YG + + ++ +Q + W + + +N +
Sbjct: 382 FKAWIEYQIAGARNINALISDYGYKSYSIQADKLQQIENWYAGKAYIY--DNGIVTEDTE 439
Query: 398 VLDLAKA---AVLRHGVRGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHA 451
L + A+ ++G R LVID D + + +T++V + + KR+
Sbjct: 440 EETLLETLENAIKQYGCRVLVIDNLMTAISDDLSSDLYRMQTKFVKALTVLAKRY----D 495
Query: 452 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 511
V+ + HPR+ G + D++GS++ N D +VI + + D + +
Sbjct: 496 VLVFLIVHPRKS---TGVAFDNDDVAGSSNITNLVD--VVIRYGKPKDNDKKDSTERILS 550
Query: 512 KVRNKVVG 519
+N++ G
Sbjct: 551 VYKNRLNG 558
>gi|424836483|ref|ZP_18261130.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
gi|365977009|gb|EHN13113.1| TOPRIM domain protein [Clostridium sporogenes PA 3679]
Length = 609
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 127/524 (24%), Positives = 206/524 (39%), Gaps = 65/524 (12%)
Query: 4 RAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRA--------- 54
R KC G T + D+ + + +++I + ++ EP +E RA
Sbjct: 56 RFKCFSCGKTYDIFDHYQQYKHMNFIQAIESIIKDYSLYIDYEPFKSERRAIKKATEYKQ 115
Query: 55 -------YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNK----- 102
Y R IS +T + V K H + +V + + N KYR
Sbjct: 116 NINAILPYLELRKISKDTAKY--VGLKAHDNNIVFEYKNELGEHIAN-KYRKAGNATKGC 172
Query: 103 KFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161
K W E T + +D ++ ++I EGE+D L++ E+G N VSVP GA S
Sbjct: 173 KMWFEAGTNINTLFNMDKVDMTKPLVITEGELDCLALIESGHKNSVSVPTGANS------ 226
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
Y+++ +L+Q +IL D D G +A R+ + V K
Sbjct: 227 ---------YEWVEVNYSWLEQFKEVILWFDNDKAGIEGMSVIAPRIPADIVKTVNSNKA 277
Query: 222 NDVDHFKDANEVLMYLGP-GALKEV--VENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE 278
KD NE+L G LKE+ + A++ I + N D FD +A RT E
Sbjct: 278 ------KDINEILYKFGKQTVLKELKKAKEADIENIEDIGNIPD-FDINEAEKIRTGIKE 330
Query: 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
F ++ + G + ++TG +GKS I+ + G+K + S E
Sbjct: 331 FD--------KVMHGFVLGSVNVLTGYNGAGKSTIINQMCIAEPIRQGFKTFIFSGELTR 382
Query: 339 REHARKLLEKHIKKP---FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
L + + K + G + + + E + +L+N L ND S
Sbjct: 383 PNLIYWLTQTMVIKDQMISLKNKEGREYSKASDKAKEMIRNYLNN--KLFIYSNDFDTSK 440
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+L+ R V+ V+D +D + S+ E Q + +K+FA + +
Sbjct: 441 TTILETMNKLAKRKNVKCFVLDNLMTIDLECKESE-ELNAQKQFIRDLKKFAIKYNAVIH 499
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
VAHPR+ N YD+ GS N D I +HR D +
Sbjct: 500 IVAHPRK-PNEKNAIVTKYDVCGSGDITNLSDYVIAMHRYTDEQ 542
>gi|62178911|ref|YP_215328.1| hypothetical protein SC0341 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|375113221|ref|ZP_09758391.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62126544|gb|AAX64247.1| orf, partial conserved hypothetical protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|322713367|gb|EFZ04938.1| hypothetical protein SCA50_0364 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 626
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 103/458 (22%), Positives = 184/458 (40%), Gaps = 56/458 (12%)
Query: 55 YFAERLISAETLRRNRVMQKR-----HGHEVVIAFPYWRNGKLVNCKY-----RDFNKKF 104
Y R IS E ++R V+ + G + ++ PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERGLDALV-LPYKRDGELLQVKRISTERPDGKKVI 185
Query: 105 WQEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 163
E D E +G ++ G +++ EGE+D +S + G + +SVP G ++ +
Sbjct: 186 MAEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIE 244
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
E + L + I ++ D D G+ A E+A R+G RC V P
Sbjct: 245 FEYHN------------LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLPH--- 289
Query: 224 VDHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGI 281
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++
Sbjct: 290 ----KDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYHDTINAFYGKQ---QYLF 342
Query: 282 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
+ W L + ELT+V GV GK+E + + G K + S+E K
Sbjct: 343 NPPWETLAYNFQFREAELTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCVASLELKP--- 398
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
+L K + + E + +F + WL + E ++++
Sbjct: 399 --GILLKRLTRQSTCCKMPPVLEIESAFKFYDDRLWLFGLTGTAKAER--------LIEI 448
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
A R+G++ +ID + + +V + F H+ V H R
Sbjct: 449 FTYARRRYGIQLFIIDSLMKCGIGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSR 504
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ + +P D+ GS + DN +I RN+ E
Sbjct: 505 K-GDSEEKPTGKMDVKGSGAITDLTDNLFIIWRNKARE 541
>gi|429106174|ref|ZP_19168043.1| DNA primase/helicase [Cronobacter malonaticus 681]
gi|426292897|emb|CCJ94156.1| DNA primase/helicase [Cronobacter malonaticus 681]
Length = 498
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 162/376 (43%), Gaps = 51/376 (13%)
Query: 55 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY----RDFNKK-FW 105
Y R IS ET + V+ + +G + + FPY R+G+L+ K R KK
Sbjct: 106 YLQSRGISPETAKAYEVVSGKVWNGERELDALVFPYKRDGELIQVKRISTERPNGKKVIM 165
Query: 106 QEKDTEKVFYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
E D E +G ++ + +++ EGE+D +S + G +N +SVP G ++ +
Sbjct: 166 AEGDCEPCLFGWQALDSKVRSVVLCEGEIDCMSYSQYG-INALSVPFGGGKGAKQQWIEF 224
Query: 165 EEQDT-KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
E + +++ +W ++ D D GQ A E+A R+G RC VR P+
Sbjct: 225 EFHNLDRFEEIW-------------ISMDNDEVGQEAAREIASRLGEHRCRMVRLPR--- 268
Query: 224 VDHFKDANEVLM-YLGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGI 281
KD NE LM + + + + A + L++ R+++ D I+A+Y + ++
Sbjct: 269 ----KDINECLMDGISEDEIWQCLGGAAFFDPEELYSAREFYQDTINAFYGKQ---QYLF 321
Query: 282 STGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
+ W +L + ELT+V GV GK+E + + G K + S+E K
Sbjct: 322 NPPWESLAYNFQFREAELTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCVASLELKP--- 377
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
+L K + + E + F + WL + E ++++
Sbjct: 378 --GILLKRLTRQATCCKMPPVLEIESAFNFYDDRLWLFGLTGTAKAER--------LIEI 427
Query: 402 AKAAVLRHGVRGLVID 417
A R+G+R +ID
Sbjct: 428 FTYARRRYGIRLFIID 443
>gi|416570385|ref|ZP_11766046.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|363575669|gb|EHL59519.1| hypothetical protein SEEM41H_03152 [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
Length = 626
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 108/496 (21%), Positives = 194/496 (39%), Gaps = 68/496 (13%)
Query: 19 NNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--H 76
+ R + + + K R +T LE Y R IS E +R V+ + +
Sbjct: 99 DARCEKRFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVAKRYEVVSGKVWN 150
Query: 77 GHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIII 128
G + + PY R+G+L+ K D K E D E +G ++ G +++
Sbjct: 151 GERELNALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVL 210
Query: 129 VEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII 188
EGE+D +S + G + +SVP G ++ + E + L + I
Sbjct: 211 CEGEIDCMSYAQYG-IPALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIF 257
Query: 189 LATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVE 247
++ D D G+ A E+A R+G RC V P KD NE LM + + + +
Sbjct: 258 ISMDVDDVGREAAREIASRLGEHRCRLVTLPH-------KDINECLMNGVTEDEIWQYIG 310
Query: 248 NAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVP 306
A + L++ R+++ D ++A+Y + ++ + W L + ELT+V GV
Sbjct: 311 AASYFDPEELYSAREFYQDTVNAFYGKQ---QYLFNPPWETLAYNFQFREAELTLVNGVN 367
Query: 307 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSA 363
GK+E + + G K + S+E K ++L + P E
Sbjct: 368 GHGKTEVVGHMALEAMRQ-GVKTCVASLELKPGVLLKRLTRQSTCCKTPPVLEIE----- 421
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
+ +F + WL + E ++++ A R+G++ +ID +
Sbjct: 422 ---SAFKFYDDRLWLFGLTGTAKAER--------LIEIFTYARRRYGIQLFIIDSLMKCG 470
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+ +V + F H+ V H R+ + +P D+ GS
Sbjct: 471 IGDDDYNGQKAFVDALCD----FKNKTNSHIILVTHSRK-GDSEEKPTGKMDVKGSGAIT 525
Query: 484 NKCDNGIVIHRNRDPE 499
+ DN +I RN+ E
Sbjct: 526 DLTDNLFIIWRNKARE 541
>gi|281208797|gb|EFA82972.1| T7-like mitochondrial DNA helicase [Polysphondylium pallidum PN500]
Length = 710
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 107/425 (25%), Positives = 182/425 (42%), Gaps = 63/425 (14%)
Query: 82 IAFPYWRN----GKLVN--CKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEG 131
I FP W N G ++ CK R K Q K + F+G + ++ +I++ EG
Sbjct: 315 ITFP-WTNLDKKGNVITHRCKLRALESKALQRIEPKGGKWGFFGWHTVPLDAKEIVLTEG 373
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E D +++ ++ +S+P+GA +S+ +P E+ K YLW
Sbjct: 374 EYDAMAVYQSTGKPTISLPNGA-NSLPIALLPLLERFEKI-YLW---------------M 416
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D PGQ A + A ++G +R + VR K+ + + KDAN+ L L L +++E+A
Sbjct: 417 DDDIPGQEGAAKFAEKLGIQRTFIVR-TKQGEDNGPKDANDAL--LQGRDLNKILESASN 473
Query: 252 YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW-RALNELYNV-LPGELTIVTGVPNSG 309
P + +F D I + R G+ + W N+L GELTI +G G
Sbjct: 474 IPHDQICDFSDVRASIHSEL-RNPSSVNGVKSQWFPTFNKLLKGHRKGELTIFSGPTGIG 532
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--------LEKHIKKPFFEANYGG 361
K+ + L + + G + + S E KV A+K+ LE+H+ NY
Sbjct: 533 KTTLLSQLSLDFSTQ-GTRTLWGSFEIKVSRLAKKMMGQYAGVDLEQHVD------NYNK 585
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
A ++F + F + + VLD + AV H V +++D
Sbjct: 586 IA-----DDFAALPMYFMRFFGSTQVDK--------VLDAMEYAVYVHDVEHIILDNLQF 632
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH 481
+ + + E + + + +++FA H+ V HPR+ + P N+ DI G+A
Sbjct: 633 MLSGQTKAIERFETMDESIEKLRKFATQKNVHITLVIHPRKQLD-ADTPLNISDIFGTAK 691
Query: 482 FINKC 486
C
Sbjct: 692 ATQVC 696
>gi|281416177|ref|YP_003347912.1| DNA primase/helicase [Vibrio phage N4]
gi|237701484|gb|ACR16477.1| DNA primase/helicase [Vibrio phage N4]
Length = 568
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 117/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ E D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGE----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 531 VTG 533
TG
Sbjct: 537 QTG 539
>gi|168051585|ref|XP_001778234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670331|gb|EDQ56901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 44/53 (83%)
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437
R E++ LPS+ WVL+L KAAV+RHG+ LVIDPYNELDHQRP +QTE EY++
Sbjct: 39 TRHEDEELPSVDWVLNLVKAAVMRHGIHELVIDPYNELDHQRPENQTEMEYMA 91
>gi|66806239|ref|XP_636842.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
gi|60465241|gb|EAL63335.1| T7-like mitochondrial DNA helicase [Dictyostelium discoideum AX4]
Length = 772
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 111/470 (23%), Positives = 195/470 (41%), Gaps = 64/470 (13%)
Query: 82 IAFPYWR-----NGKLVNCKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEGE 132
I FP+ N ++ CK R +K Q K + F+G I ++ +II+ EGE
Sbjct: 325 ITFPWTTLDKKGNIQVHRCKLRSTKEKSLQRIEPKGGKWGFFGWHTIPSDAKEIILTEGE 384
Query: 133 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 192
D +++ + + +S+P+GA +S+ +P E+ K YLW D
Sbjct: 385 YDAMAVYQETGIPTISLPNGA-NSLPIALLPLLERFEKI-YLW---------------MD 427
Query: 193 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
D PG A + + ++G +R + V K+ND + KDAN+ L L LK ++ A
Sbjct: 428 DDVPGMEGAAKFSEKLGIQRTFIVS-TKQNDPNGPKDANDAL--LAGKDLKAILSTAANI 484
Query: 253 PIMGLFNFRDYFDEIDAYYHRTSGDEFGI----STGWRALNE-LYNVLPGELTIVTGVPN 307
P + +F D + + H D + S + + N+ L GELTI +G
Sbjct: 485 PHDQICDFSD----VRSIIHNELKDPLSVIGKQSKWFPSFNKVLKGHRKGELTIFSGPTG 540
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--R 365
GK+ + L + G + + S E KV ARK+L + F N E +
Sbjct: 541 IGKTSVLSQLSLDFCSQ-GTRTLWGSFELKVPRLARKMLSQ-----FSNCNLDKHVENYQ 594
Query: 366 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425
+ F + F + + V+D + AV V +V+D +
Sbjct: 595 EIADNFSNMPMYFLRFFGSTQVDK--------VIDAMEYAVYVQDVEHIVLDNLQFMLGS 646
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 485
+ E + + +++FA H+ V HPR+ + + N+ DI G+A +
Sbjct: 647 QAKGIERFEIMDDSIEKLRKFASQKNVHITLVIHPRKQD--IDQVLNINDIFGTAKATQE 704
Query: 486 CDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
DN I++ +++ Q + +N+ G +G LS+ + T +
Sbjct: 705 ADNVIILQNSKNN--------QRYLDIKKNRFSGDLGIIPLSFEKETNRF 746
>gi|326424980|ref|YP_004286202.1| putative DNA primase/helicase [Pseudomonas phage phi15]
gi|325048384|emb|CBZ41997.1| putative DNA primase/helicase [Pseudomonas phage phi15]
Length = 571
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 105/473 (22%), Positives = 198/473 (41%), Gaps = 55/473 (11%)
Query: 76 HGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMD 134
+G +A Y +G +V K RD NK+F+ K +G G +++ EGE+D
Sbjct: 101 NGETKQVANYYGDDGSIVAQKVRDRNKEFFIAGSMPKDALFGKHLWSGGKKVVVTEGEID 160
Query: 135 KLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 192
L++ + G VS+P GA +D K N K + IIL D
Sbjct: 161 CLTVAQLQGGKYPVVSIPRGA-------------KDAKKTIAAN-KDWFSGFQEIILMFD 206
Query: 193 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
D G+ A E A + R + + P KDANE ++ A+ + + NAE Y
Sbjct: 207 MDEDGRKAALEAAEVLPAGRVFIAKLP-------LKDANECILNGHAKAVMDQIWNAEKY 259
Query: 253 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSE 312
G+ + + + I A S + ++ ++ GE+ ++T SGKS
Sbjct: 260 VPDGVVSAKSLKERIKAKKLAAS---LPLVAPYKLKKMTKDMREGEVILITSGSGSGKST 316
Query: 313 WIDALICNINEHAGWKFVLCSMENKVREHARKL----LEKHIKK---PFFEANYGGSAER 365
++ + N+ ++G + +E V E + + + K I++ + E + + +R
Sbjct: 317 FVRQNVHNLFSNSGIPVGVAMLEESVEETVQDIVGLEMGKRIRQEPDSYTEEQFDETFDR 376
Query: 366 MTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425
+ FE L ++F+ E+ + +++++D+ G + +V+D + +
Sbjct: 377 I----FESDLLHLYDSFAE-SAEDRLMARLEYMVDV-------EGCKVIVLDHVSIVISA 424
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAH 481
E + + +++T +K FA+ + V+ + H + G P D+ GS
Sbjct: 425 MDGDTDERKMIDRLMTKLKSFAKSKSVCVFVICHLKNPDKGKPHEEGRPVMATDLRGSGG 484
Query: 482 FINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ A P + R ++ + G G A ++ YN+ TG
Sbjct: 485 LRQLSDTIIAVERNQQG-ANP---NLILFRVLKCRFTGETGPAGYMEYNKFTG 533
>gi|404369188|ref|ZP_10974532.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
gi|313688474|gb|EFS25309.1| hypothetical protein FUAG_00824 [Fusobacterium ulcerans ATCC 49185]
Length = 770
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 32/227 (14%)
Query: 48 LGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE 107
LG + +Y R IS + L R R G + P K+V KYR +KK E
Sbjct: 88 LGGDWLSYLKGRSISEKGLNRFC----RLGKNNTMMIPITDGEKVVAIKYRTIDKKLSCE 143
Query: 108 K-DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
+ F ++E +S +IIVEGE+D LS E+G+ N VS+P G KN+
Sbjct: 144 TGSSSDYFVNWQNVENKSYLIIVEGEIDLLSAVESGYDNVVSIPFGC------KNLKC-- 195
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVG--RERCWRVRWPKKNDV 224
+ N K +++ S+IILA D D PG ++ ++ + + + V K
Sbjct: 196 -------IDNQKKWIESFSKIILAVDNDVPGIECKNQIIDKLSSIKSKLYTVEMGK---- 244
Query: 225 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
+KD NE+LM G + +V++ A+ F F ++ E D YY
Sbjct: 245 --YKDFNEILMAEGTDGIIKVIQAADRVG----FGFTPFYQEADGYY 285
>gi|323512045|gb|ADX87506.1| DNA primase/helicase [Vibrio phage ICP3_2009_B]
gi|323512093|gb|ADX87553.1| DNA primase/helicase [Vibrio phage ICP3_2009_A]
Length = 568
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDANSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 531 VTG 533
TG
Sbjct: 537 QTG 539
>gi|66473270|gb|AAY46279.1| DNA primase/helicase [Vibriophage VP4]
Length = 504
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 44 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 101
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 102 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 147
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 148 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 197
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 198 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 256
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 257 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 314
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 315 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 356
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 357 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 416
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 417 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 472
Query: 531 VTG 533
TG
Sbjct: 473 QTG 475
>gi|383389399|gb|AFH14415.1| DNA primase/helicase [Vibrio phage VP3]
Length = 574
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 114 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 171
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 172 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 217
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 218 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 267
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 268 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 326
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 327 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 384
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 385 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 426
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 427 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 486
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 487 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 542
Query: 531 VTG 533
TG
Sbjct: 543 QTG 545
>gi|418253124|ref|ZP_12878414.1| putative replication protein P [Shigella flexneri 6603-63]
gi|397901644|gb|EJL17986.1| putative replication protein P [Shigella flexneri 6603-63]
Length = 509
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 144/326 (44%), Gaps = 47/326 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 372
Query: 312 EWIDALICNINEHAGWKFVLCSMENK 337
E + + G K + S+E K
Sbjct: 373 EVVGHMALEAMRQ-GVKTCIASLELK 397
>gi|82793115|ref|YP_249580.2| Primase/Helicase [Vibriophage VP4]
Length = 569
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 116/483 (24%), Positives = 196/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 109 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 166
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 167 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 212
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+A A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 213 GRAAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 262
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 263 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 321
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 322 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 379
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 380 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 421
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 422 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 481
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 482 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 537
Query: 531 VTG 533
TG
Sbjct: 538 QTG 540
>gi|18640487|ref|NP_570328.1| RP primase/helicase [Synechococcus phage P60]
gi|18478717|gb|AAL73266.1| primase/helicase [Synechococcus phage P60]
Length = 531
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 121/472 (25%), Positives = 197/472 (41%), Gaps = 57/472 (12%)
Query: 82 IAFPYWRNGK-LVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME 139
I FPY+ N + LV K+R K F WQ K+ + +G I++ EGE D LS+
Sbjct: 87 IQFPYYDNSRQLVGYKHRGKEKDFRWQGKNPDNQLFGQQLWGKGKAIVVTEGEFDALSVF 146
Query: 140 EA-GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ 198
+A VSVP+GA S+ KK + ++ YL N + IIL D D G
Sbjct: 147 QARKNWPVVSVPNGAQSA--KKALAAQ-----LTYLLNFE-------EIILMFDNDDAGI 192
Query: 199 ALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLF 258
AEE +R + +D +KDA+E + A+ + + N Y +
Sbjct: 193 QAAEECVSLFPADRVFTAF------IDGYKDASEAVSAKDYDAVTQAIWNKSTYTPKSII 246
Query: 259 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEW---I 314
+ R FD + H + + ALN L GEL +T +GKS I
Sbjct: 247 DGRTLFDVVTTPLHGRDAE-----YPFAALNSTTGGLRLGELVTITAGSGTGKSTLCGEI 301
Query: 315 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV--EEFE 372
+ N ++ G+ ++E V+ +L+ KP N + E T
Sbjct: 302 AVSLINQDQRVGY----IALEESVKRTGLRLMTVAANKPLHLNNELPTDELRTAFDSTLG 357
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432
G+ +L + F + + DSL + + L KA H V+ +V+D + L S E
Sbjct: 358 TGRVFLRDGFGSV--DPDSL--LNDIRFLTKA----HEVQWIVLDHLSILLSGNE-STDE 408
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINKCDN 488
+ + ++T ++ F + + ++H R+ G +L + GS D
Sbjct: 409 RKMIDIVMTKLRSFVEETGIGMILISHLRRNQGDKGHEDGAQVSLSQLRGSHSIAQLSD- 467
Query: 489 GIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYMDIV 539
+VI RD G +R Q +R ++N+ G G A LSY+ TG ++ +
Sbjct: 468 -LVIALERDISKGD-NRSQ--LRVLKNRFNGQTGPAGGLSYSVETGRMIEAL 515
>gi|224153845|ref|XP_002337405.1| predicted protein [Populus trichocarpa]
gi|222838982|gb|EEE77333.1| predicted protein [Populus trichocarpa]
Length = 415
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 130/286 (45%), Gaps = 43/286 (15%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 109
++ + R I+ ET+ RV ++ G + FPY R G+LVN KYR+ +K QE
Sbjct: 111 VKEWLNGRGITDETIAAFRVAEQIRGGKTYAVFPYLRAGELVNVKYRNIAEKRDMRQEGG 170
Query: 110 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
E +G I+ ++ + I EGE+D +++ + G + +SV GA +
Sbjct: 171 AEPCLFGWHLIDPKARTVAITEGEIDAMTLHQVG-IPALSVNAGAGN------------- 216
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+Q+L N L S I++ D D G+A A+E+ RR+G ERC V P+ K
Sbjct: 217 --HQWLENDWERLDCFSEILIFFDSDEAGKAGAQEIVRRLGLERCKLVTLPE-------K 267
Query: 229 DANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYY---HRTSGDEFGI 281
DANE +L GA E + A+ + D+ + + + + H +GD
Sbjct: 268 DANE---FLQKGACGEDFWHATKEAKTLDPEEMRQASDFINRVKSMFYPAHDDAGDPV-- 322
Query: 282 STGWRALNEL--YNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 325
R +L + GE+T+ TG GKS + ++ + +
Sbjct: 323 ---LRLDKDLDWFEFRSGEVTVWTGYNGHGKSLMLSQVLLGLMQQG 365
>gi|171912822|ref|ZP_02928292.1| hypothetical protein VspiD_16620 [Verrucomicrobium spinosum DSM
4136]
Length = 630
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 185/448 (41%), Gaps = 83/448 (18%)
Query: 81 VIAFP-YWRNGKLVNCKYRDF----------NKKFWQEKDTEKVFYGLDDIEGES----D 125
+ FP + +G LVN YR K+ WQ+ +G + +
Sbjct: 189 ALVFPCHAPDGTLVNRSYRTVPGPGESGLGARKRVWQDAGCAPSLFGWQALPKSAWEKRT 248
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
+++ EG++D ++ + G + +SVP+G ++ + W+ L+
Sbjct: 249 VLLCEGQIDAMTWTQWG-VPALSVPNGTGAAW-------------IDHEWD---QLELFD 291
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 245
I L+ D D G A + +R+GR RC V+ P K DANE L+ G +
Sbjct: 292 HIYLSFDMDGAGAENANRVMQRLGRHRCLLVKLPHK-------DANECLLE---GCTADD 341
Query: 246 VEN--AELYP------IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 297
E+ A+ P ++G + E++ + D ++ W ++ + P
Sbjct: 342 AEHWIAQARPPQIHKLLLGQELHQRLMSELEPKPEPFTLDFLRVA--WP--HQGFYFRPH 397
Query: 298 ELTIVTGVPNSGKSEWIDALICNINE---HAGWKFVLCSMENKVREHARKLLEKHIKKPF 354
ELT+ TG GKS +++ + N+ H G + SME + R+L + ++P
Sbjct: 398 ELTVWTGAYGQGKSTFLNFVALNLLSQLSHTG--VFMASMEMRAESTLRRLTTTYFQEPA 455
Query: 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 414
+N MT E + ++ I S +L++ + RHGV+
Sbjct: 456 TPSNA------MTFLEKFGTRLVFADVVGYI--------SQDLLLEMMMFSFQRHGVQHF 501
Query: 415 VIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 472
++D +D E E+ Q + ++ FA+ H+ VAHPR+ + G+ +
Sbjct: 502 IVDSLMRVDG------LEEEFAEQGRFMNRLQEFAKETGAHIHLVAHPRKSPS--GQRQD 553
Query: 473 LYDISGSAHFINKCDNGIVIHRNRDPEA 500
+I GS+ N DN + I RN + +A
Sbjct: 554 RLEIKGSSLIANNADNIVAISRNPEKDA 581
>gi|424526998|ref|ZP_17970725.1| putative replication protein P [Escherichia coli EC4421]
gi|424533151|ref|ZP_17976512.1| putative replication protein P [Escherichia coli EC4422]
gi|425168992|ref|ZP_18567480.1| putative replication protein P [Escherichia coli FDA507]
gi|428996727|ref|ZP_19065342.1| AAA domain protein [Escherichia coli 94.0618]
gi|390850528|gb|EIP13896.1| putative replication protein P [Escherichia coli EC4421]
gi|390861259|gb|EIP23528.1| putative replication protein P [Escherichia coli EC4422]
gi|408082888|gb|EKH16838.1| putative replication protein P [Escherichia coli FDA507]
gi|427245964|gb|EKW13229.1| AAA domain protein [Escherichia coli 94.0618]
Length = 903
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 139/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVIPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W++L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWKSLADKFQFREAELTLVNGVNGHGKA 307
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 308 -------CPLNE 312
>gi|323512142|gb|ADX87601.1| DNA primase/helicase [Vibrio phage ICP3_2008_A]
gi|323512190|gb|ADX87648.1| DNA primase/helicase [Vibrio phage ICP3_2007_A]
Length = 568
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 531 VTG 533
TG
Sbjct: 537 QTG 539
>gi|194100328|ref|YP_002003758.1| gp4 [Enterobacteria phage EcoDS1]
gi|193201323|gb|ACF15802.1| gp4 [Enterobacteria phage EcoDS1]
Length = 562
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 121/483 (25%), Positives = 192/483 (39%), Gaps = 70/483 (14%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDK 135
G V +A Y R+G V K RD K F + + +G G I+I EGE+D
Sbjct: 104 GKMVQVADYYDRSGAKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDA 163
Query: 136 LSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
LS+ + G VS+P G+ S+ KK + + + YL Q IIL D
Sbjct: 164 LSVAQVQDGKYPVVSLPLGSKSA--KKAMAANLE------------YLDQFEEIILMFDM 209
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ E+ A + R K ++ +KDAN L A+ + + NA+ +
Sbjct: 210 DEPGRQAIEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFV 263
Query: 254 IMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
G+ + D + T G F T A+ GEL +VT GKS
Sbjct: 264 PAGVVSAASLKDRTREAMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKS 321
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGG 361
++ L+ G + + +E V E + L+ K +K+ E G
Sbjct: 322 TFVRQLLLEWG-RGGKRVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DG 377
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
+ + F K L ++F+ E D+L AK A + G+ VI
Sbjct: 378 RFDEWYDKLFGDDKFHLYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----L 423
Query: 422 LDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
LDH V + E + + +++T +K+FA+ V + H + G P
Sbjct: 424 LDHISIVVSGMEDNSDERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPV 483
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNR 530
++ D+ GS D I + RN+ + I V +R ++ + G G A L YN+
Sbjct: 484 SITDLRGSGALRQLSDTIIALERNQQGDTPNI----VQLRLLKCRFTGDTGVAGQLEYNK 539
Query: 531 VTG 533
TG
Sbjct: 540 TTG 542
>gi|325171290|ref|YP_004251261.1| DNA primase/helicase [Vibrio phage ICP3]
gi|323511996|gb|ADX87458.1| DNA primase/helicase [Vibrio phage ICP3]
Length = 568
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 195/483 (40%), Gaps = 82/483 (16%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEE 140
IA Y G LV K RD +K F + K ++ + +G + G +II EGE+D L++
Sbjct: 108 IANYYDETGTLVFQKLRDKDKNFKTRGKSSDSLMFGKNLWNGGRKLIITEGEIDCLTV-- 165
Query: 141 AGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
A C VS+P GA ++ + Y +Q IIL D D
Sbjct: 166 AQIQGCKYPVVSIPLGAKAAKKCIAANLD--------------YFEQFEEIILMFDQDDA 211
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE---NAELYP 253
G+ A+E A + + P KDANE L+ G KEV++ NA +
Sbjct: 212 GRTAAQECAEIMPMGKTKIAVLP-------LKDANECLL---AGKTKEVIDAIWNAAPFV 261
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSE 312
G+ N + + D F + ++ LN++ GE+ ++T GKS
Sbjct: 262 PDGVVNAASMKTRVKEFLKNMETDGF-LFGNFKRLNDMTLGARGGEVVMITSGSGMGKST 320
Query: 313 WIDALICNINEHAGWKFVLCSMENKVRE---------------HARKLLEKHIKKPFFEA 357
+ L + A +C++E V E +++L + I+ F+
Sbjct: 321 FARQLF--LQWQANMPVGICALEEAVEETVLDMLGLANSVRLRQSKELQAQWIEDGTFDK 378
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV--RGLV 415
NY F+ G L ++F+ E+D L L+K A + G+ R ++
Sbjct: 379 NYDAL--------FDSGNLNLYDSFA--ESESDRL--------LSKMAYMVDGLGCRAIL 420
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
+D + + + E + + +++T +K FA+ V + H + G P
Sbjct: 421 LDHISIVVSAMDDNSDERKIIDRLMTKLKAFAKSKGVVVAVICHLKNPEKGKPHEEGRPV 480
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
+ D+ GS D I + RN+ + D V VR ++ + G G A +L ++R
Sbjct: 481 TITDLRGSGALRQLSDTIIALERNQQGD----DPNMVRVRILKCRFTGETGVACYLKFDR 536
Query: 531 VTG 533
TG
Sbjct: 537 QTG 539
>gi|415814992|ref|ZP_11506590.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
gi|323170918|gb|EFZ56568.1| hypothetical protein ECLT68_4996 [Escherichia coli LT-68]
Length = 578
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 141/312 (45%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y S ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFY---SKQQYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 373 -------CPLNE 377
>gi|419350455|ref|ZP_13891792.1| putative replication protein P [Escherichia coli DEC13B]
gi|378199716|gb|EHX60175.1| putative replication protein P [Escherichia coli DEC13B]
Length = 629
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 138/311 (44%), Gaps = 46/311 (14%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 312 EWIDALICNIN 322
+D I N
Sbjct: 373 CPLDEPILLAN 383
>gi|383112841|ref|ZP_09933628.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
gi|382948959|gb|EIC71887.1| hypothetical protein BSGG_5269, partial [Bacteroides sp. D2]
Length = 266
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 72 MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEG 131
M + E I F Y+ G+L+N K+R K F + E + Y +D I G++ II EG
Sbjct: 128 MPQSGKKERCICFNYFEGGQLINTKFRALPKLFKMVQGAELIPYNIDSIVGQTSCIIHEG 187
Query: 132 EMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILAT 191
E+D S AGF + +SVP GA S++S + E + + II+A
Sbjct: 188 ELDAASSIAAGFQSVISVPAGANSNLSWLDRFME-------------THFEDLKEIIIAV 234
Query: 192 DGDPPGQALAEELARRVGRERCWRVRW 218
D D G L EL R+G ERC V +
Sbjct: 235 DADSAGIRLRNELINRLGAERCRVVTY 261
>gi|419043141|ref|ZP_13590120.1| putative replication protein P [Escherichia coli DEC3A]
gi|419061530|ref|ZP_13608299.1| putative replication protein P [Escherichia coli DEC3D]
gi|419298444|ref|ZP_13840467.1| putative replication protein P [Escherichia coli DEC11C]
gi|377901378|gb|EHU65697.1| putative replication protein P [Escherichia coli DEC3A]
gi|377916111|gb|EHU80205.1| putative replication protein P [Escherichia coli DEC3D]
gi|378157382|gb|EHX18416.1| putative replication protein P [Escherichia coli DEC11C]
Length = 903
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 90
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 150
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 307
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 308 -------CPLNE 312
>gi|419055997|ref|ZP_13602843.1| putative replication protein P [Escherichia coli DEC3C]
gi|420287693|ref|ZP_14789881.1| putative replication protein P [Escherichia coli TW10246]
gi|425412044|ref|ZP_18793820.1| putative replication protein P [Escherichia coli NE098]
gi|377911700|gb|EHU75868.1| putative replication protein P [Escherichia coli DEC3C]
gi|390789779|gb|EIO57222.1| putative replication protein P [Escherichia coli TW10246]
gi|408326309|gb|EKJ42130.1| putative replication protein P [Escherichia coli NE098]
Length = 952
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 139
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 356
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 357 -------CPLNE 361
>gi|298713554|emb|CBJ27082.1| mitochondrial helicase twinkle [Ectocarpus siliculosus]
Length = 634
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 192/456 (42%), Gaps = 64/456 (14%)
Query: 93 VNCKYRDFNKKFWQEKDTEKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNCVS 148
V K R K WQ D +G+ + +G +++++ EGE D +++ +A VS
Sbjct: 210 VRVKARAVRNKQWQRLDPAGGRWGIFGLHTVPDGATEVVLTEGEYDAMAVYQATGKPAVS 269
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
+P+GA SS+ + +P E+ K YLW D D GQA ++ ++
Sbjct: 270 LPNGA-SSLPLEVLPLLERFNKI-YLW---------------MDHDGAGQAGVDKFVLKL 312
Query: 209 GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 268
G RC VR P ++D + KDANE L L L++ ++ A + F+D ++
Sbjct: 313 GTRRCLVVR-PLEDDPNPPKDANEAL--LAGRNLQDFLDGASSTKHDDIQTFQDLRQKV- 368
Query: 269 AYYHRTSGDEFGISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDALICNINEH 324
H TG ++ ++ GELT++TG SGK+ + L ++
Sbjct: 369 --IHELQNPLEYSGTGLQSFPRFTRIIKGLRRGELTVLTGPTGSGKTTILSQLSLDLAA- 425
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--RMTVEEFEQGKAWLSNTF 382
G + S E K +K+L + +P A+ GS + R + F+ +
Sbjct: 426 GGLSTLWGSFEIKNTRLMQKMLHQFAGRPV--ADLAGSPDSLRAVADRFQ------ALPL 477
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL---------DHQRPVSQTET 433
S +R + ++ V+D AV + V+ +++D + +RP +
Sbjct: 478 SFLRFHGGT--NVDEVIDAMDYAVYANDVQHIILDNLQFMLTRNSREGHGGKRPGPFDKF 535
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
+ L ++FA H H+ V HPR+ G I GSA + D +++
Sbjct: 536 DAQDLALDKFRKFATEHNVHITLVIHPRKEDE--GYKLTTSSIFGSAKATQEADLVVILQ 593
Query: 494 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
+ ++ + V+K N+ G +GE L ++
Sbjct: 594 NQKGNKS-------LEVKK--NRFDGDLGEVHLVFD 620
>gi|70672400|gb|AAZ06403.1| mitochondrial helicase twinkle [Vermamoeba vermiformis]
Length = 724
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 198/464 (42%), Gaps = 72/464 (15%)
Query: 92 LVNCKYRDFNKKFWQEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 148
LV KYR K+ Q + +G + I E+ +II EGE D +++ +A L +S
Sbjct: 287 LVRYKYRALGGKWLQRLEPIGGGWCVFGWNLIAPETSVIITEGEFDAMAVYQATGLPAIS 346
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
+P GA +P E L++ +I L D D GQ A++ A ++
Sbjct: 347 LPCGANC------LPVE-----------VITMLERFDKIYLWLDDDVVGQQAAQKYALKL 389
Query: 209 GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 268
GRERC+ V K KDAN+ L L +++ A P + NF + E+
Sbjct: 390 GRERCYLVS-TKLGATTGPKDANDALRQ--GHDLGTILKAARRLPHKQILNFNEIRSEV- 445
Query: 269 AYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDAL---ICNI 321
+ + + R+ L +L G EL+I+TG GK+ I + +C+
Sbjct: 446 --FRELANPDQVAGRQMRSFPTLNKLLKGHRKGELSILTGPTGIGKTTIISQISMDLCSQ 503
Query: 322 NEHAGW-KFVLCSM---ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 377
+ W F L ++ + + + A+K LEKH+ + F+ + ++F Q +
Sbjct: 504 GVNTLWGSFELNNVRLAKKMLNQFAQKNLEKHLAE--FD---------LWADKFSQVPLY 552
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN---ELDHQRPVSQTETE 434
+R + ++ VLD AV + V +V+D ++ H + + +
Sbjct: 553 F------MRFHGGT--EVEAVLDAMDYAVYVYDVEHIVLDNLQFMMQVGHFKGYERFDQ- 603
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+ +++ ++FA H+ + HPR+ + G+ ++ + G+A + DN I++ +
Sbjct: 604 -LDSAISLFRKFATEKNVHITLIIHPRKEDD--GQALSINSVFGTAKATQEADNVIIVQK 660
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
+ + +N+ G +G Y++ + +Y ++
Sbjct: 661 G---------KYYRYLEVTKNRFSGDLGIVPYKYDKESHKYFEL 695
>gi|419049965|ref|ZP_13596875.1| putative replication protein P [Escherichia coli DEC3B]
gi|377900239|gb|EHU64574.1| putative replication protein P [Escherichia coli DEC3B]
Length = 887
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 23 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 74
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 75 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 134
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 135 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 181
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 182 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 234
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 235 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 291
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 292 -------CPLNE 296
>gi|118399623|ref|XP_001032136.1| Toprim domain containing protein [Tetrahymena thermophila]
gi|89286474|gb|EAR84473.1| Toprim domain containing protein [Tetrahymena thermophila SB210]
Length = 1088
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/468 (22%), Positives = 207/468 (44%), Gaps = 80/468 (17%)
Query: 91 KLVNCKYRDF---NKKFWQEK--DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFL 144
KL+ CK R NKK+ + K ++ +GL+ + + +++I EGE D +++ +A L
Sbjct: 312 KLIKCKIRGIGSENKKYMRVKPSGSKSGIFGLNTVPQNAKELVITEGEYDAMAVNQATGL 371
Query: 145 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 204
VS+P+GA N+P E + C L++ +I L D D G+ ++L
Sbjct: 372 PAVSLPNGAS------NLPLE--------VIEC---LEKIEKIYLWLDNDEVGRNNRQKL 414
Query: 205 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 264
A ++G R + V + KDAN++L P + + ++ + P + F D
Sbjct: 415 AEKLGVHRTYIVNTLGE------KDANDILRQ-DPSRIIKYIQESATIPDQNILMFSDLK 467
Query: 265 DEIDAYYHRTSGDEFGISTGWRALN-ELYN-----VLPGELTIVTGVPNSGKSEWIDAL- 317
D + HR +F S G+R+ E +N + GE+T++TG SGK+ ++ L
Sbjct: 468 DLV---LHRLL--KFEHSQGYRSRRFEFFNETIKGLRRGEMTVLTGPTGSGKTTFLSQLS 522
Query: 318 --ICNINEHAGW-----KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370
C W K + + ++ + L + H K P++ A+R
Sbjct: 523 LDFCTQQVPTLWGSFEIKNEVLATNMIMQMSGQDLFKNHNKFPYW-------AQR----- 570
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F+ + N + ++ ++ + ++ ++ ++ +VID L +
Sbjct: 571 FDMIPMYFMNFY--------GSTNLDQIISTIEYSIYKYDIQHVVIDNLQFLLGTQAKGF 622
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
++ + + + ++ A H+ V HP+++ E N+ + GSA + DN +
Sbjct: 623 SKFDLQERAIEAFRQLATKKDIHLTLVIHPKKVDE--NEDLNISSVFGSAKATQEADN-V 679
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
+I +NRD RV + ++K N+ G IG+ + +++ + ++
Sbjct: 680 IIMQNRDKY-----RV-IDIKK--NRFNGDIGKKAIIFDKSNKNFYEM 719
>gi|387881710|ref|YP_006312012.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|419886627|ref|ZP_14407262.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
gi|307604107|gb|ADN68417.1| P [Stx2 converting phage vB_EcoP_24B]
gi|386795168|gb|AFJ28202.1| putative replication protein P [Escherichia coli Xuzhou21]
gi|388364972|gb|EIL28785.1| bacteriophage protein [Escherichia coli O111:H8 str. CVM9570]
Length = 968
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 138/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEIVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 373 -------CPLNE 377
>gi|420344960|ref|ZP_14846408.1| putative replication protein P [Shigella boydii 965-58]
gi|391277769|gb|EIQ36499.1| putative replication protein P [Shigella boydii 965-58]
Length = 968
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 127/281 (45%), Gaps = 42/281 (14%)
Query: 55 YFAERLISAETLRRNRVMQKR--HGHEVV--IAFPYWRNGKLVNCKY-----RDFNKKFW 105
Y R IS E ++R V+ + +G + + PY R+G+L+ K D K
Sbjct: 127 YLQSRGISPEVVKRYEVVSGKVWNGERELDALVLPYKRDGELLQVKRISTERPDGKKVIM 186
Query: 106 QEKDTEKVFYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
E D E +G ++ G +++ EGE+D +S + G ++ +SVP G ++ +
Sbjct: 187 AEGDCEPCLFGWQALDAGVRAVVLCEGEIDCMSYAQYG-ISALSVPFGGGKGAKQQWIEF 245
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
E + L + I ++ D D G+ A E+A R+G RC V P
Sbjct: 246 EYHN------------LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP----- 288
Query: 225 DHFKDANEVLMY-LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGIS 282
+KD NE LM + + + + A + L++ R+++ D I+A+Y S ++ +
Sbjct: 289 --YKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAFY---SKQQYLFN 343
Query: 283 TGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE 323
W +L + + ELT+V GV GK+ C +NE
Sbjct: 344 PPWESLADKFQFREAELTLVNGVNGHGKA-------CPLNE 377
>gi|110806565|ref|YP_690085.1| bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|424838955|ref|ZP_18263592.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
gi|110616113|gb|ABF04780.1| putative bacteriophage protein [Shigella flexneri 5 str. 8401]
gi|383468007|gb|EID63028.1| putative bacteriophage protein [Shigella flexneri 5a str. M90T]
Length = 968
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 373 -------CPLNE 377
>gi|170783639|ref|YP_001648921.1| putative replication protein P [Enterobacteria phage Min27]
gi|163955733|gb|ABY49883.1| putative replication protein P [Enterobacteria phage Min27]
Length = 860
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRAVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKK---QYLFNPPWESLADKFQFREAELTLVNGVNGHGKA 372
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 373 -------CPLNE 377
>gi|290995598|ref|XP_002680370.1| predicted protein [Naegleria gruberi]
gi|284093990|gb|EFC47626.1| predicted protein [Naegleria gruberi]
Length = 813
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 180/431 (41%), Gaps = 68/431 (15%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
III EGE D +++ + + VS+P+G +++P + +L+
Sbjct: 406 IIITEGEFDAMAVYQKTGIPAVSLPNGC------RSLPVD-----------VVQWLEDFD 448
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF------------KDANEV 233
+I L D D PGQ AE ++++G RC+ V K VD + KDANE
Sbjct: 449 KIYLWMDDDVPGQQGAELFSKKLGVGRCYIVHSNYKEVVDEYGDPIEQTNEKKIKDANEA 508
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA-----L 288
L L ++E A + F + ++ +R D+ + G ++ L
Sbjct: 509 L--LAGLDFHRLIEEAAPIQHERILTFNTFKQQV----YRELFDKSEVVNGVQSHFFPGL 562
Query: 289 NE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
N+ L GELTI+TG GK+ + L + ++ + S E +R H +L++
Sbjct: 563 NKILKGHRRGELTIITGATGIGKTTVLSQLSLDYCKYGNVPTLWGSFE--IRNH--RLIK 618
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLAKA 404
K + + +A + + EE ++ +S FS + I +LD
Sbjct: 619 KMMCQL--------AARQYSPEELKRDFEIISEQFSELPMYFLNFYGSTDIDELLDAMDY 670
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTET-EYVSQMLTMVKRFAQHHACHVWFVAHPRQL 463
AV + V +VID + S T E + + +++FA + HV V HP+++
Sbjct: 671 AVYVYDVAHIVIDNLQFMMSTSDASYTNRFELQDKAIEKLRKFATTRSVHVTLVVHPKKI 730
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
E + + GSA + DN I+I RN+ +QV +N+ GT+G
Sbjct: 731 DE--KEQLQISSVFGSAKATQEADNIIMIQRNKH-----YKYLQV----KKNRFDGTLGI 779
Query: 524 AFLSYNRVTGE 534
+ R GE
Sbjct: 780 VPYRFERNRGE 790
>gi|316934314|ref|YP_004109296.1| DNA primase [Rhodopseudomonas palustris DX-1]
gi|315602028|gb|ADU44563.1| DNA primase [Rhodopseudomonas palustris DX-1]
Length = 541
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/462 (24%), Positives = 191/462 (41%), Gaps = 56/462 (12%)
Query: 90 GKLVNCKYRDFNKKFWQEKDTEKV-FYGLDDIEGESDIIIVEGEMDKLSMEEA--GFLNC 146
G LV K R KKF ++ + YG+ G+ ++I EGE+D LS+ +A
Sbjct: 108 GALVAQKIRRAGKKFQCINGSKDMPLYGMWMAGGDLSVVITEGELDALSVSQAFKHKYAV 167
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY---LKQASRIILATDGDPPGQALAEE 203
VS+P+GA +D Y NC+ Y L + +I+L D D PG+ AEE
Sbjct: 168 VSLPNGA-------------KDAAY----NCERYYEWLDRFKKIVLMFDQDDPGRQAAEE 210
Query: 204 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 263
A + + + P+K D NEVL+ G AL + A+ + G+ + ++
Sbjct: 211 AAAVLPVGKVFIAVLPRK-------DPNEVLVEDGAAALVDAFWKAKPWRPDGIVSGTEF 263
Query: 264 FDEIDAYYHRTSGDEFGIST-GWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
+D T E G + G LNE L + GELT++T GKS W L +
Sbjct: 264 --SVDDLMQAT---EPGYAIEGCPELNEKLLGLRKGELTLLTAGSGIGKSTWARQLAYML 318
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPF--FEANYGGSAE---RMTVEEFEQGKA 376
++ G K +E + ++ A+ + H P AN + E +
Sbjct: 319 HQTHGLKIGNVFLEEQNKKTAQAYVALHNSVPLGKLRANPNIISRDQWETAAREVVHQRM 378
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QRPVSQTETEY 435
N F + N L ++++ + K +++D + + S+ E +
Sbjct: 379 CFYNHFGSLEQAN-LLSKLRYMATVEKCDF-------IILDHISIVTSGMESSSEGERKD 430
Query: 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---GEPPNLYDISGSAHFINKCDNGIVI 492
+ ++T + Q + + H ++ + G+ +L D+ GSA N I +
Sbjct: 431 IDILMTKLASLVQETGVGIIAIVHLKRAKDKSFNEGDQISLSDLRGSAALEQLSFNVIAL 490
Query: 493 HRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
R++ E R Q VR ++ + G G A L YNR TG
Sbjct: 491 ERDQQAEEDDA-RDQSTVRVLKCRETGDTGTADTLVYNRSTG 531
>gi|417722282|ref|ZP_12371112.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
gi|333019692|gb|EGK38967.1| hypothetical protein SFK304_1434 [Shigella flexneri K-304]
Length = 603
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 88 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 139
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 140 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 199
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 200 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 246
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 247 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 299
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 300 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 356
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 357 -------CPLNE 361
>gi|415855881|ref|ZP_11531005.1| gp61 [Shigella flexneri 2a str. 2457T]
gi|313649566|gb|EFS13995.1| gp61 [Shigella flexneri 2a str. 2457T]
Length = 554
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 137/312 (43%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 39 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 90
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 91 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 150
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G ++ + E + L + I ++ D
Sbjct: 151 DCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEEIFISMDV 197
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 198 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 250
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 251 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 307
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 308 -------CPLNE 312
>gi|24112100|ref|NP_706610.1| bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30062219|ref|NP_836390.1| bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|384542280|ref|YP_005726342.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|417727131|ref|ZP_12375874.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
gi|24050930|gb|AAN42317.1| putative bacteriophage protein [Shigella flexneri 2a str. 301]
gi|30040464|gb|AAP16196.1| putative bacteriophage protein [Shigella flexneri 2a str. 2457T]
gi|281600065|gb|ADA73049.1| putative bacteriophage protein [Shigella flexneri 2002017]
gi|332763407|gb|EGJ93647.1| hypothetical protein SFK671_0806 [Shigella flexneri K-671]
Length = 619
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 140/312 (44%), Gaps = 53/312 (16%)
Query: 27 KKFSK---MKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR--HGHEVV 81
KKFS+ K R +T LE Y R IS E ++R V+ + +G +
Sbjct: 104 KKFSRPDRKKIARYVTRTESHLE--------YLQSRGISPEVVKRYEVVSGKVWNGEREL 155
Query: 82 --IAFPYWRNGKLVNCKY-----RDFNKKFWQEKDTEKVFYGLDDIE-GESDIIIVEGEM 133
+ PY R+G+L+ K D K E D E +G ++ G +++ EGE+
Sbjct: 156 DALVLPYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEI 215
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +S + G ++ +SVP G +++Q +++Y L + I ++ D
Sbjct: 216 DCMSYAQYG-ISALSVPFGGGKG-------AKQQWIEFEY-----HNLDRFEEIFISMDV 262
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+ R+G RC V P +KD NE LM + + + + A +
Sbjct: 263 DDVGREAAREIVSRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 315
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 316 DPEELYSAREFYQDTINAFYGKQ---QYLFNPPWESLADKFQFREAELTLVNGVHGHGKA 372
Query: 312 EWIDALICNINE 323
C +NE
Sbjct: 373 -------CPLNE 377
>gi|317487302|ref|ZP_07946097.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316921492|gb|EFV42783.1| toprim domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 598
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 211/516 (40%), Gaps = 59/516 (11%)
Query: 40 EDSLELEPLGNELRAYFAERLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYR 98
+D + +P+ + R I+ ET + K G IA Y G LV R
Sbjct: 71 KDPVPFDPVPVDAFMALKARGITQETCEHFGYGIGKAGGKYCHIAPLYDHEGILVAQHLR 130
Query: 99 DFNKKF-WQEKDTEKVFYGLDD-IEGESDIIIVEGEMDKLSMEE--AGFLNCVSVPDGAP 154
K+F W+ +E V +G G +I+ EGE+D LS+ + VS+P+G+
Sbjct: 131 FEGKEFRWRGSASEAVLFGQTLWRRGGRKVIVTEGEIDCLSISQLQGNKWPVVSLPNGSS 190
Query: 155 SSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCW 214
S +Y+ +L+ ++ A D D PGQ A+E A + +
Sbjct: 191 SGA--------------KYIRASLEWLESFDEVVFAFDMDEPGQKAAKECALLLSPGKAK 236
Query: 215 RVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRT 274
R P KDANE L+ L + + A Y G+ + + +++I
Sbjct: 237 IARLP-------MKDANECLVAGKGKELIDALWGAVPYRPDGIRSGAELWEDI------K 283
Query: 275 SGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333
G + LN +L V GEL + T GKS ++ + ++ G + +
Sbjct: 284 KPPPAGYEIPYPGLNGKLGGVRLGELVLFTAGSGIGKSTIVNEIAYHLMMAHGLTLGVMA 343
Query: 334 MENKVREHARKLLEKHIKKPF-FEANYGGSAERMTVEEFE----QGKAWLSNTFSLIRCE 388
+E +AR+ L H+ KP A + E F+ GK ++ + F +
Sbjct: 344 LEENPARNARRYLGIHLNKPLHLPAAHASVPEADLKAAFDAVMGNGKWYIYDHFG--SSD 401
Query: 389 NDSLPSIKWVLDLA---KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 445
D+L S L + KA VL H +V+ +E + ++E + + +++T ++
Sbjct: 402 IDTLLSKLRYLAVGLGCKAIVLDH--ISIVVSGLDESE-----GESERKIIDKLMTRLRS 454
Query: 446 FAQHHACHVWFVAH---PRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAG 501
+ V V H P + ++ G P +L D+ GS D +V+ RD +
Sbjct: 455 LIEETGILVLAVVHLKRPDKGKSYNEGRPVSLTDLRGSGSLEQVSD--VVVSLERDQQGD 512
Query: 502 PIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEYM 536
D + +R ++N+ +G G A + Y+R TG +
Sbjct: 513 EPD--EATIRVLKNRPLGITGLAGTVRYDRETGRLL 546
>gi|148724467|ref|YP_001285433.1| primase/helicase [Cyanophage Syn5]
gi|145588112|gb|ABP87931.1| primase/helicase [Synechococcus phage Syn5]
Length = 534
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 113/465 (24%), Positives = 198/465 (42%), Gaps = 53/465 (11%)
Query: 81 VIAFPYWRN-GKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSM 138
VI FPY+ + G++ + K R K+F W K+ +K +G I+I EGE D L++
Sbjct: 88 VIRFPYYSSAGRVCSYKERPQAKEFHWVGKNEDKQLFGQQLFGKGKSIVITEGEFDALAV 147
Query: 139 EEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
+A + C SVP+GA + KK++ S + D YL + IIL D D
Sbjct: 148 WQARPNWPVC-SVPNGAQGA--KKSL-SLQLD-----------YLLKFDEIILMFDNDEA 192
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 256
G A AEE + ++ + + +KDA E L A+++ V N Y
Sbjct: 193 GIAAAEECVQLFPADKVFLA------PLSQYKDACEALQAGDTDAIRQAVWNKRTYSPKS 246
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWID 315
+ + R+ FD + H D + LN++ L GEL +T +GKS
Sbjct: 247 IIDGRELFDLVSTPLHGRDAD-----YPYSDLNKVTGGLRLGELVTITAGSGTGKSTLCG 301
Query: 316 ALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE--RMTVEEFEQ 373
+ ++ G ++E V+ +L+ KP N + R +
Sbjct: 302 EIAVSLISQ-GESVGYIALEESVKRTGLRLMTVEANKPLHLDNKINETDFKRAFDQTLGS 360
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
G+ +L + F + + +L+ + V + V+ +V+D + L S E
Sbjct: 361 GRVYLRDGFGSVDPDQ--------LLNDVRYLVKTNEVKWIVLDHLSILLSGNE-SNDER 411
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLH----NWVGEPPNLYDISGSAHFINKCDNG 489
+ + +T ++ F + + ++H R++ + G +L + GS H I + +
Sbjct: 412 KMIDITMTKLRSFVEETGIGMILISHLRRVQGDKGHEDGASVSLGQLRGS-HAIAQLSD- 469
Query: 490 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTG 533
+V+ RD AG +R ++ V ++N+ G G A LSY TG
Sbjct: 470 LVVALQRDISAGD-NRSELVV--LKNRFNGQTGPAGKLSYGLETG 511
>gi|83308133|emb|CAJ29366.1| gp4B protein [Enterobacteria phage K1F]
Length = 516
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 188/483 (38%), Gaps = 70/483 (14%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDK 135
G V +A Y R+G V K RD K F + + +G G I+I EGE+D
Sbjct: 54 GKMVQVADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDA 113
Query: 136 LSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
LS+ + G VS+P GA S+ E YL Q IIL D
Sbjct: 114 LSVAQVQDGKYPVVSLPLGAKSAKKAMAANLE--------------YLDQFEEIILMFDM 159
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ E+ A + R K ++ +KDAN L A+ + + NA+ +
Sbjct: 160 DEPGRQAIEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFV 213
Query: 254 IMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
G+ + D + T G F T A+ GEL +VT GKS
Sbjct: 214 PAGVVSAASLKDRTREAMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKS 271
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGG 361
++ L+ G + + +E V E + L+ K +K+ E G
Sbjct: 272 TFVRQLLLEWG-RGGKRVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DG 327
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
+ + F K L ++F+ E D+L AK A + G+ VI
Sbjct: 328 RFDEWYDKLFGDDKFHLYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----L 373
Query: 422 LDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
LDH V + E + + +++T +K+FA+ V + H + G P
Sbjct: 374 LDHISIVVSGMEDNSDERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPV 433
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
++ D+ GS D + + RN+ + + V +R ++ + G G A L YN+
Sbjct: 434 SITDLRGSGALRQLSDTILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNK 489
Query: 531 VTG 533
TG
Sbjct: 490 TTG 492
>gi|317059597|ref|ZP_07924082.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685273|gb|EFS22108.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 769
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 34/228 (14%)
Query: 48 LGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE 107
LG + Y R IS + L R R G + P +V+ KYR +KK E
Sbjct: 87 LGEDWLTYLKGRGISEKGLGR----LVRLGRNNTMMIPVTDGEHVVSIKYRTMDKKMSSE 142
Query: 108 KDTEKVFY-GLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
K ++ + +I+ +S +IIVEGE+D LS EAG+ N VS+P GA KN+ + E
Sbjct: 143 KGSQSNYLVNWQNIKNKSYLIIVEGEIDLLSAIEAGYDNVVSLPFGA------KNLKAIE 196
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA---RRVGRERCWRVRWPKKND 223
K +++ S+I +A D D PG+ +E+ RRV + + V +
Sbjct: 197 HQ---------KTWIESFSKITIAVDNDIPGEECKKEIIEILRRV-KNKVHEVNFGT--- 243
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
+KD NEVL G A++ +++ A + FR ++ E + YY
Sbjct: 244 ---YKDLNEVLQDKGVEAIEAIIKAASKVEHI----FRPFYKEENGYY 284
>gi|83308132|emb|CAJ29365.1| gp4A protein [Enterobacteria phage K1F]
Length = 566
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 188/483 (38%), Gaps = 70/483 (14%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDK 135
G V +A Y R+G V K RD K F + + +G G I+I EGE+D
Sbjct: 104 GKMVQVADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDA 163
Query: 136 LSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
LS+ + G VS+P GA S+ E YL Q IIL D
Sbjct: 164 LSVAQVQDGKYPVVSLPLGAKSAKKAMAANLE--------------YLDQFEEIILMFDM 209
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ E+ A + R K ++ +KDAN L A+ + + NA+ +
Sbjct: 210 DEPGRQAIEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFV 263
Query: 254 IMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
G+ + D + T G F T A+ GEL +VT GKS
Sbjct: 264 PAGVVSAASLKDRTREAMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKS 321
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGG 361
++ L+ G + + +E V E + L+ K +K+ E G
Sbjct: 322 TFVRQLLLEWG-RGGKRVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DG 377
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
+ + F K L ++F+ E D+L AK A + G+ VI
Sbjct: 378 RFDEWYDKLFGDDKFHLYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----L 423
Query: 422 LDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
LDH V + E + + +++T +K+FA+ V + H + G P
Sbjct: 424 LDHISIVVSGMEDNSDERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPV 483
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
++ D+ GS D + + RN+ + + V +R ++ + G G A L YN+
Sbjct: 484 SITDLRGSGALRQLSDTILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNK 539
Query: 531 VTG 533
TG
Sbjct: 540 TTG 542
>gi|194473820|ref|YP_002048644.1| DNA primase/helicase [Morganella phage MmP1]
gi|194307041|gb|ACF42023.1| DNA primase/helicase [Morganella phage MmP1]
Length = 575
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 117/485 (24%), Positives = 191/485 (39%), Gaps = 68/485 (14%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G V IA +NG++++ K R NK+F K Y G I+I EGE
Sbjct: 107 KLNGETVQIANYRDQNGEIISQKIRAANKEFATRGKHKSDSLYLKHLWSGGKRIVITEGE 166
Query: 133 MDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATD 192
+D LS+ + V G+ + V+KK + + + YL Q IIL D
Sbjct: 167 IDALSVMQVQGGKWPVVSLGSGAQVAKKTLSANYE------------YLDQFEEIILMFD 214
Query: 193 GDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
D G+ EE A + + P +KDANE L+ A+ + NA +
Sbjct: 215 MDEAGRKAVEEAAPVLPAGKVKVAVLP-------YKDANECLVNGDTEAIINQIFNANPW 267
Query: 253 PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGK 310
G+ + + + H + + G+ G LNE GE+ +VT GK
Sbjct: 268 VPDGVVSAASMKERVQQ--HLETAESVGLLFDGCEGLNERTLGTRGGEVVMVTSGSGMGK 325
Query: 311 SEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKH-----------IKKPFFEANY 359
S ++ G + + +E E +L H K+ F +
Sbjct: 326 STFVRQQALAWGNKHGKRVGMAMLEESAEETVEDILGLHCGFRLRQSPLEFKREFVTS-- 383
Query: 360 GGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPY 419
GS + E F + L ++F+ E + L LAK A +R G+ VI
Sbjct: 384 -GSYDLAFSEVFGSDRFHLYDSFA--EAETERL--------LAKLAYMRMGLDCDVII-- 430
Query: 420 NELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGE 469
LDH V E + + +++T +K FA+ + V H + + H G
Sbjct: 431 --LDHISIVVSASEESDERKMIDRLMTKLKSFAKSSGVILVVVCHLKNPTKGKAHEE-GR 487
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSY 528
P ++ D+ GS D I + RN+ + + V +R ++ + G G A ++ Y
Sbjct: 488 PVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLIRLLKCRFTGDTGVAGYMEY 543
Query: 529 NRVTG 533
N+ TG
Sbjct: 544 NKQTG 548
>gi|37956818|gb|AAP34085.1| gene 4A [Enterobacteria phage T7]
gi|37956872|gb|AAP34138.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 121/500 (24%), Positives = 203/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKIRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEY-----VSQMLTMVKRFAQHHACHVWFVAH 459
A +R G+ VI LDH + E+ + ++T +K FA+ + + H
Sbjct: 410 AYMRSGLGCDVI----ILDHISIIVSASGEFDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMKYNKETG 540
>gi|37956820|gb|AAP34087.1| gene 4B [Enterobacteria phage T7]
gi|37956874|gb|AAP34140.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 114/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKIRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 379
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 380 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F S E D L LAK A +R G+ VI LDH +
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIIVS 368
Query: 431 TETEY-----VSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 480
E+ + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGEFDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMKYNKETG 477
>gi|77118185|ref|YP_338107.1| primase/helicase [Enterobacteria phage K1F]
gi|72527929|gb|AAZ72981.1| primase/helicase [Enterobacteria phage K1F]
Length = 586
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 119/483 (24%), Positives = 188/483 (38%), Gaps = 70/483 (14%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDK 135
G V +A Y R+G V K RD K F + + +G G I+I EGE+D
Sbjct: 104 GKMVQVADYYDRSGTKVGQKVRDAEKNFTAIGSVKSDMLFGSQLWNGGKKIVITEGEIDA 163
Query: 136 LSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
LS+ + G VS+P GA S+ E YL Q IIL D
Sbjct: 164 LSVAQVQDGKYPVVSLPLGAKSAKKAMAANLE--------------YLDQFEEIILMFDM 209
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ E+ A + R K ++ +KDAN L A+ + + NA+ +
Sbjct: 210 DEPGRQAIEDAAPVLPAGRV------KVAFINGYKDANAALQAKDFKAITDAIWNAKPFV 263
Query: 254 IMGLFNFRDYFDEIDAYYHR--TSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
G+ + D + T G F T A+ GEL +VT GKS
Sbjct: 264 PAGVVSAASLKDRTREAMLKAETEGLMFSSCTTLNAMT--LGARAGELIMVTSGSGMGKS 321
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGG 361
++ L+ G + + +E V E + L+ K +K+ E G
Sbjct: 322 TFVRQLLLEWG-RGGKRVGMAMLEEAVEETVQDLMGLDNNVRLRQSKELKQAILE---DG 377
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
+ + F K L ++F+ E D+L AK A + G+ VI
Sbjct: 378 RFDEWYDKLFGDDKFHLYDSFA--ESEEDTL--------FAKLAYMVDGLDCDVI----L 423
Query: 422 LDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPP 471
LDH V + E + + +++T +K+FA+ V + H + G P
Sbjct: 424 LDHISIVVSGMEDNSDERKTIDRIMTRLKKFAKTKGVVVVVICHLKNPEKGKSHEEGRPV 483
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNR 530
++ D+ GS D + + RN+ + + V +R ++ + G G A L YN+
Sbjct: 484 SITDLRGSGALRQLSDTILALERNQQGDTPNV----VQLRLLKCRFTGDTGVAGHLEYNK 539
Query: 531 VTG 533
TG
Sbjct: 540 TTG 542
>gi|119637760|ref|YP_918996.1| DNA primase/helicase [Yersinia phage Berlin]
gi|194100483|ref|YP_002003328.1| gp4A [Yersinia phage Yepe2]
gi|119391791|emb|CAJ70664.1| hypothetical protein [Yersinia phage Berlin]
gi|193201216|gb|ACF15697.1| gp4A [Yersinia phage Yepe2]
gi|387941877|gb|AFK13457.1| T7-like phage primase/helicase protein [Yersinia phage YpP-G]
Length = 570
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 131/544 (24%), Positives = 211/544 (38%), Gaps = 73/544 (13%)
Query: 17 VDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH 76
D R Q+S K+ T + + L A L+ A + + K +
Sbjct: 46 TDETREQASTKRRRSYNTGGDKMSNLLNFGDSDGRYANLKARGLMEAICRKYGYWVAKVN 105
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGEMDK 135
G + +A Y G LV K RD NK+F + K + +G G I++ EGE+D
Sbjct: 106 GEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGEIDC 165
Query: 136 LSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
L++ + G VS+P GA ++ KK + + Y Q IIL D
Sbjct: 166 LTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILMFDM 211
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+ EE A + + P KDANE L+ A+ + + NA+ +
Sbjct: 212 DEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQPWV 264
Query: 254 IMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGK 310
G+ + D + T+G F TG LN++ GE+ +VT GK
Sbjct: 265 PDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSGMGK 321
Query: 311 SEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEANYG 360
S ++ + + G K L +E V E H R +K +K E
Sbjct: 322 STFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED--- 377
Query: 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
G + E F L ++F+ + D L AK A + G+ VI
Sbjct: 378 GRFDEWYGELFNTDMFHLYDSFA--ESQEDRL--------FAKLAYMVDGLDCNVI---- 423
Query: 421 ELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEP 470
LDH V + E + + +++T +K FA+ V + H + G P
Sbjct: 424 LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEEGRP 483
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYN 529
++ D+ GS D I + RN+ + + V +R ++ + G G A ++YN
Sbjct: 484 VSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHMAYN 539
Query: 530 RVTG 533
+ TG
Sbjct: 540 KETG 543
>gi|29366716|ref|NP_813761.1| putative primase/helicase [Pseudomonas phage gh-1]
gi|29243575|gb|AAO73154.1|AF493143_15 putative primase/helicase [Pseudomonas phage gh-1]
Length = 562
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 193/485 (39%), Gaps = 66/485 (13%)
Query: 66 LRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGES 124
++R VM + +A Y G L + K RD K+F+ +K +G G
Sbjct: 98 IKREMVMAQ-------VANYYDAQGNLTSQKVRDATKEFFTAGAHDKDALFGRQLWSGGR 150
Query: 125 DIIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
I++ EGE+D L++ + G VS+ G S +KK S + Y
Sbjct: 151 KIVVTEGEIDCLTVAQLQGGKYPVVSIGHG--SKAAKKTCASNYE------------YFD 196
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 242
IIL D D G+A ++E A + + P FKDANE + A+
Sbjct: 197 TFDEIILMFDMDDAGRAASQEAAEVLPPGKVKIAVLP-------FKDANECVKQGNAKAV 249
Query: 243 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP----GE 298
+ + NA+ + G+ + + + R + S A +EL + GE
Sbjct: 250 TDAIWNAQPFVPDGVVSAK-------SLKARLKEKKVIPSLPLVAPHELKKMTKDCRGGE 302
Query: 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358
+ +VT SGKS ++ + N+ + + +E V E + ++ HI +
Sbjct: 303 VILVTSGSGSGKSTFVRQNVYNLFHNESIPCGVAMLEEAVEETVQDIVGLHIGARVRQNP 362
Query: 359 YGGSAE---RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA--VLRHGVRG 413
+ E R E FE K +L + F+ D L LAK A V G R
Sbjct: 363 DETTEEVFDRAFDEIFESDKLFLYDAFA--EAAEDRL--------LAKLAYMVEAEGCRV 412
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GE 469
+V+D + + Q E + + +++T +K FA+ V+ + H + G
Sbjct: 413 IVLDHISIVVSAMDGDQDERKTIDRLMTKIKAFAKTKNVAVFVICHLKNPDKGKPHEEGR 472
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSY 528
P + D+ GS D I + RN + G + + R ++ + G G A F+ Y
Sbjct: 473 PIVVTDLRGSGGLRQLSDTIIALERN---QQGAFPHI-ILFRVLKCRFTGETGVAGFMRY 528
Query: 529 NRVTG 533
++ TG
Sbjct: 529 DKATG 533
>gi|9627447|ref|NP_041975.1| DNA primase/helicase [Enterobacteria phage T7]
gi|130907|sp|P03692.1|PRIM_BPT7 RecName: Full=DNA primase/helicase
gi|15584|emb|CAA24405.1| unnamed protein product [Enterobacteria phage T7]
gi|37956659|gb|AAP33929.1| gene 4A [Enterobacteria phage T7]
gi|265524986|gb|ACY75849.1| DNA primase/helicase [Enterobacteria phage T7]
Length = 566
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 122/500 (24%), Positives = 203/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
A +R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMEYNKETG 540
>gi|30387470|ref|NP_848279.1| primase/helicase protein [Yersinia phage phiA1122]
gi|30314107|gb|AAP20515.1| primase/helicase protein [Yersinia phage phiA1122]
gi|387941777|gb|AFK13359.1| T7-like phage primase/helicase protein [Yersinia phage YpP-Y]
gi|387941831|gb|AFK13412.1| T7-like phage primase/helicase protein [Yersinia phage YpP-R]
gi|387941928|gb|AFK13507.1| T7-like phage primase/helicase protein [Yersinia phage YpsP-G]
gi|432142762|gb|AGB07340.1| DNA primase/helicase [Yersinia phage R]
Length = 566
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 122/500 (24%), Positives = 203/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAH 459
A +R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGYTGIAGYMEYNKETG 540
>gi|9627449|ref|NP_041977.1| helicase [Enterobacteria phage T7]
gi|15586|emb|CAA24407.1| unnamed protein product [Enterobacteria phage T7]
gi|37956661|gb|AAP33931.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 379
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 380 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 431 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 480
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|282857715|ref|ZP_06266924.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
gi|282584385|gb|EFB89744.1| DNA primase/helicase [Pyramidobacter piscolens W5455]
Length = 537
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 112/483 (23%), Positives = 196/483 (40%), Gaps = 75/483 (15%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESDIIIV-EGEMDKLSME 139
+A Y +NG+ V R +K F W+ YG ++IV EGE+D LS+
Sbjct: 41 VATYYDQNGEPVAQHLRGKDKTFRWRGSPQNVKLYGQQLWNDHGKMVIVTEGEIDCLSVS 100
Query: 140 --EAGFLNCVSVPDGAPSSVS--KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
+ VSVP+G S+V K N+ +L+ ++++ D D
Sbjct: 101 QVQGNRWPVVSVPNGVTSAVRAFKDNLE----------------WLESFEKVVICFDMDE 144
Query: 196 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
PG+ A E A+ + + + + P KD N++L L + +A Y
Sbjct: 145 PGRKAANEAAQVLSPGKAFIMYLP-------LKDPNDMLKAGKTAELISAIWSAAPYRPD 197
Query: 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWI 314
G+ + + +DE+ T E G +T + LN + + + EL + T GKS +
Sbjct: 198 GIVSGIELWDEL------TKAPEKGYATPFPKLNTMTDGIRKKELWLFTAGSGIGKSTVV 251
Query: 315 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM------TV 368
+ + + ++E R A + L ++ KP G S E + T+
Sbjct: 252 HEIAYHFMTQHKLTIGVMALEESKRRAAERYLSIYLNKPLHLTREGVSEEALKDAYDHTI 311
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH---- 424
++G+ +L + F + D+L S +R+ ID + LDH
Sbjct: 312 G--QEGRFYLYDHFG--STDIDTLMS-----------RIRYMAVSCAID-FLVLDHISIV 355
Query: 425 ---QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH---PRQLHNWV-GEPPNLYDIS 477
R ++E + + ++T ++ + V V H P Q +W G+ P L D+
Sbjct: 356 VSGLRDAGESERKQIDMLMTALRSLVEDTGIGVLGVVHLKRPAQGASWNDGKKPALTDLR 415
Query: 478 GSAHFINKCDNGIVIHRN-RDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTGEY 535
GS D + + RN +D E G R+ V ++N+ G +G A L Y+ TG
Sbjct: 416 GSGGLEQLSDMVVSLSRNQQDEETGNYSRLNV----LKNRFTGVVGTADTLLYDNRTGRL 471
Query: 536 MDI 538
+ +
Sbjct: 472 LAV 474
>gi|194100378|ref|YP_002003952.1| gp4A [Enterobacteria phage 13a]
gi|193201425|gb|ACF15902.1| gp4A [Enterobacteria phage 13a]
Length = 564
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 114/467 (24%), Positives = 191/467 (40%), Gaps = 61/467 (13%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 112 QNGTIVSQKIRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 171
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 172 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 219
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 220 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 272
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 273 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 327
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQ--GKAW 377
G K L +E V E A L+ H + +++ S +R +E +F+Q + +
Sbjct: 328 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQWFDELF 384
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----E 432
++TF L DS + LAK A +R G+ VI LDH V E
Sbjct: 385 GNDTFHLY----DSFAEAETDRLLAKLAYMRSGLGCDVI----ILDHISIVVSASGESDE 436
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCD 487
+ + ++T +K FA+ + + H + + H G P ++ D+ GS D
Sbjct: 437 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSD 495
Query: 488 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 496 TIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 538
>gi|194100379|ref|YP_002003953.1| gp4B [Enterobacteria phage 13a]
gi|193201426|gb|ACF15903.1| gp4B [Enterobacteria phage 13a]
Length = 503
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 115/474 (24%), Positives = 187/474 (39%), Gaps = 75/474 (15%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGTIVSQKIRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 379
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 380 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 431 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 480
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|119637761|ref|YP_918997.1| Helicase [Yersinia phage Berlin]
gi|194100484|ref|YP_002003329.1| 4B [Yersinia phage Yepe2]
gi|119391792|emb|CAJ70665.1| hypothetical protein [Yersinia phage Berlin]
gi|193201217|gb|ACF15698.1| 4B [Yersinia phage Yepe2]
Length = 503
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 121/487 (24%), Positives = 194/487 (39%), Gaps = 73/487 (14%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 36 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 95
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 96 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 141
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 142 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
Query: 251 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 195 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 251
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 357
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 252 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 310
Query: 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417
G + E F L ++F+ + D L AK A + G+ VI
Sbjct: 311 ---GRFDEWYGELFNTDMFHLYDSFA--ESQEDRL--------FAKLAYMVDGLDCNVI- 356
Query: 418 PYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 467
LDH V + E + + +++T +K FA+ V + H +
Sbjct: 357 ---LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEE 413
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FL 526
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A +
Sbjct: 414 GRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHM 469
Query: 527 SYNRVTG 533
+YN+ TG
Sbjct: 470 AYNKETG 476
>gi|148747808|ref|YP_001285774.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
gi|146230041|gb|ABQ12449.1| DNA primase/helicase [Phormidium phage Pf-WMP3]
Length = 682
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 147/361 (40%), Gaps = 56/361 (15%)
Query: 77 GHEVV---IAFPYW--RNGKLVNCKYRDFNKKFWQEKDTEKVFY-----GLDDIEGESD- 125
G EV+ + FPY+ KLV K RD + + KV Y GL I+ +SD
Sbjct: 38 GSEVIREALVFPYYDLSTSKLVGFKLRDLEA---ESRRGTKVCYTTGKLGLFAIKRKSDT 94
Query: 126 IIIVEGEMDKLSMEEA-GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 184
++I EGE D L++ V +P + + + ++N+ +L+Q
Sbjct: 95 VVITEGEPDALTLASVYRKYTVVGLPGSSTTKLVRENL----------------TWLRQH 138
Query: 185 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244
I L D D PGQ EEL + + ++V + KDANE L+ +L++
Sbjct: 139 KHIYLCLDSDEPGQLATEELISMLPGYKTYKVNLAR-------KDANEYLVAGDVLSLQK 191
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIV 302
+AE + L D+ +A + DE TG+ +LN + + EL +
Sbjct: 192 AFSSAERVGVSVL------TDDNEATVNENEVDEVSYDTGFASLNSMLGGGLHVTELCGL 245
Query: 303 TGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361
G GKS++ + N+ EH K + E R+ R+ + H+ + F
Sbjct: 246 VGHTGRGKSQFAAQVAYNLAEHNEDLKMLYICTEMTHRQMVRRFSQIHLGRRFNGNVPVT 305
Query: 362 SAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421
AER +A S + IR L D A+L GVR + ID N+
Sbjct: 306 KAER---------QAANSYIYRRIRFNRFELTDTNEFYDACVQAILEDGVRVIFIDVVND 356
Query: 422 L 422
L
Sbjct: 357 L 357
>gi|312436362|gb|ADQ83171.1| DNA helicase [Yersinia phage Yep-phi]
Length = 503
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 36 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 95
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 96 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 141
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 142 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 194
Query: 251 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 195 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPTLNDMTLGARGGEVIMVTSGSG 251
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 357
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 252 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 310
Query: 358 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
F++ L NT F L DS + AK A + G+ V
Sbjct: 311 G-----------RFDEWYGALFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 355
Query: 416 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 467
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 356 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 411
Query: 468 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 524
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 412 EEGRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 467
Query: 525 FLSYNRVTG 533
++YN+ TG
Sbjct: 468 HMAYNKETG 476
>gi|312436361|gb|ADQ83170.1| DNA primase/helicase [Yersinia phage Yep-phi]
Length = 569
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 102 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 161
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 162 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCSANYE------------YFDQFDEIILM 207
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 208 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 260
Query: 251 LYPIMGLFNFRDYFDEIDAYY--HRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 261 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPTLNDMTLGARGGEVIMVTSGSG 317
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 357
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 318 MGKSTFVRQQMLQWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMKILED 376
Query: 358 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
F++ L NT F L DS + AK A + G+ V
Sbjct: 377 G-----------RFDEWYGALFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 421
Query: 416 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 467
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 422 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 477
Query: 468 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 524
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 478 EEGRPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 533
Query: 525 FLSYNRVTG 533
++YN+ TG
Sbjct: 534 HMAYNKETG 542
>gi|403330901|gb|EJY64364.1| putative hydrolases or acyltransferases (alpha/beta hydrolase
superfamily) [Oxytricha trifallax]
Length = 1556
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/441 (20%), Positives = 191/441 (43%), Gaps = 47/441 (10%)
Query: 103 KFWQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161
KF K +GL I+ E I+I EGE D +++ + + VS+P+GA + + +
Sbjct: 243 KFMPAGSDLKGLFGLTTIKPEHKAIVITEGEYDAMAVYQETGIPAVSLPNGA-NHLPVQV 301
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
+P + ++ RI L D D G+ AE+ A+++G +R + +
Sbjct: 302 LP----------------FFERFERIYLWLDADEVGRNSAEKFAQKLGVKRTIIID-SRF 344
Query: 222 NDVDHFKDANEVL-MYLG-PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
D + KDAN+ L M L K+ ++ + + +D + Y +G
Sbjct: 345 EDENGPKDANDALRMKLDFANIFKKYSRQLGDQNLLTISDMKDSVMKRLLNYTELTGVPS 404
Query: 280 GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
T + L + GELT++TG SGK+ ++ L + G + S E K
Sbjct: 405 NCFTFFNRT--LKGLRKGELTVLTGATGSGKTTFLSQLSIDFVAQ-GIPTLWGSFEIKNT 461
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
A +L+++ + + + ER+ +E+FEQ + N + + +
Sbjct: 462 ILASSMLQQYSRIKLTSS----TPERIGTELEKFEQHPLYFLNFYGSTQ--------VDL 509
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
+ + A+ + ++ + +D + + ++ ++++M+++ A H+ V
Sbjct: 510 LFETLDYAIYAYDIQYICLDNLQFMLSGQSTGFQRFDFQDKVISMLRQLATEKNVHIALV 569
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
HP+++ + N+ + GSA + DN +++ + + P + +Q+ +N+
Sbjct: 570 VHPKKVED--DNNLNVGSVFGSAKTTQEADNVMILQKFQTPN---LRNIQIK----KNRF 620
Query: 518 VGTIGEAFLSYNRVTGEYMDI 538
G +GEA L +N Y++I
Sbjct: 621 DGEVGEAQLIFNVENKRYVEI 641
>gi|302800874|ref|XP_002982194.1| hypothetical protein SELMODRAFT_421553 [Selaginella moellendorffii]
gi|300150210|gb|EFJ16862.1| hypothetical protein SELMODRAFT_421553 [Selaginella moellendorffii]
Length = 287
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHAR 343
+T+VTGVPNSGKSEWID L+CN+N W F LCSMENKV R H +
Sbjct: 50 ITVVTGVPNSGKSEWIDDLVCNLNHSKNWIFALCSMENKVWRIHTK 95
>gi|325185979|emb|CCA20483.1| twinkle protein putative [Albugo laibachii Nc14]
Length = 776
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 100/438 (22%), Positives = 178/438 (40%), Gaps = 74/438 (16%)
Query: 114 FYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+G + + ++D I++ EGE D +++ +A VS+P+G S+ +P E+ K
Sbjct: 310 LFGWNTVPADADEIVLTEGEFDAMTVYQATGKPAVSLPNGC-QSLPPSILPLLERFKKI- 367
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW-----PKKNDVDHF 227
YLW D D GQA + ++G+ RC VR PK ++
Sbjct: 368 YLW---------------MDNDAQGQANVSKFTIKLGQSRCHIVRMASAALPKSCNI--- 409
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNF----RDYFDEI-DAYYHRTSGDEFGIS 282
KDANE Y L +++ AE P + F + F+EI + R G+
Sbjct: 410 KDANEA--YREKIDLAKLLAQAERIPHAQIATFEHLRQQVFEEILNPIRLR------GVQ 461
Query: 283 TGWRALNELYNVLP----GELTIVTGVPNSGKSEWIDAL---ICNINEHAGWKFVLCSME 335
+ R+L L +L GE+TI+TG GK+ + L +C W
Sbjct: 462 S--RSLPSLNRLLKGHRLGEVTILTGPTGCGKTTLLSQLSLDLCGQGVSTLWGSFEIQNT 519
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
+ + +L K ++ +A + + FE + F +
Sbjct: 520 RLIHKMMTQLAGKSLQG-------DPAAFEIAADSFEDLPMYFLRFFGTT--------DV 564
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
++D + AV + V+ +++D + + + E L +RFA H+
Sbjct: 565 DELMDAVEYAVYAYDVQHILLDNVQFMMAGQGRGFDKFERQDAALDKFRRFATQKNVHIT 624
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
V HPR+ G+ +L + G+A + DN +++ R R + ++ VRK N
Sbjct: 625 LVIHPRK--EAEGQDLSLSSVFGTAKATQEADNVLILQRIR-------GQSRLDVRK--N 673
Query: 516 KVVGTIGEAFLSYNRVTG 533
+ G++G L Y+ +G
Sbjct: 674 RFDGSLGSVPLQYDSESG 691
>gi|255519165|ref|ZP_05386841.1| replicative DNA helicase [Clostridium difficile QCD-97b34]
Length = 443
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 116/261 (44%), Gaps = 22/261 (8%)
Query: 273 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV- 330
R G I TG+ LN + + G LTI+TG P SGKS ++ I + F+
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITNGEKAFLY 216
Query: 331 ------LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SM+ + A + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 217 SGELPSFMSMDWFRKTVAN---DYHIKE--YKSVYGGTYTDIPDYAVELISDWIEDKFFL 271
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K
Sbjct: 272 --YDEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLK 327
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 328 NLAKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDD 385
Query: 505 RVQVCVRKVRNKVVGTIGEAF 525
+ ++N++ G +F
Sbjct: 386 TYLLI---LKNRITGKQNISF 403
>gi|422935540|ref|YP_007005441.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
gi|339507924|gb|AEJ81485.1| DNA primase/helicase [Erwinia phage vB_EamP-L1]
Length = 572
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 195/496 (39%), Gaps = 55/496 (11%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKV 113
+R IS ET R+ + +++ Y +NG +V+ K RD +K F K +
Sbjct: 88 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 147
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+ G I++ EGE+D L++ E V G S +KK + +
Sbjct: 148 LFLKHLWNGGKKIVVTEGEIDALTVMELQDCKYPVVSIGHGSKAAKKTLAANFD------ 201
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q IIL D D PG+ EE A + + P KDANE
Sbjct: 202 ------YFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KDANEC 248
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNEL- 291
++ AL E + NA + G+ + D + S E G+ TG ALN+L
Sbjct: 249 MLNGNQKALMEQIWNASPWVPDGVVSAISLKDRVREAMQ--SAKEVGLLFTGNPALNDLT 306
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKH 349
GE+ ++T GKS + + G K LC++E V E L L+ +
Sbjct: 307 LGARLGEVIMITSGSGMGKSTFARQQMLQWGRE-GIKVGLCALEESVEETVEDLMGLDNN 365
Query: 350 IKKPFFEANYGGSAERMTVEEFEQGKAWL--SNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
++ N + + F+ L S+ F L DS + AK A +
Sbjct: 366 VR---LRQNKEMREQILADGRFDSWYDALFDSDMFHLY----DSFAESQEDRLFAKMAYM 418
Query: 408 RHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
G+ VI LDH V E + + +++T +K FA+ C V + H +
Sbjct: 419 VDGLGCKVI----LLDHISIVVSGSEESDERKMIDRLMTKLKSFAKSKGCVVVVICHLKN 474
Query: 463 LHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
G P ++ D+ GS D I + R++ + + V +R ++ +
Sbjct: 475 PEKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERDQQGDNPNV----VQLRLLKCRFT 530
Query: 519 GTIGEA-FLSYNRVTG 533
G G A + Y+++TG
Sbjct: 531 GDTGIAGHMEYDKLTG 546
>gi|37956715|gb|AAP33984.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 121/500 (24%), Positives = 202/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCVANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKRKIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
A + G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMEYNKETG 540
>gi|422935541|ref|YP_007005442.1| DNA helicase [Erwinia phage vB_EamP-L1]
gi|339507925|gb|AEJ81486.1| DNA helicase [Erwinia phage vB_EamP-L1]
Length = 506
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 120/496 (24%), Positives = 195/496 (39%), Gaps = 55/496 (11%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKV 113
+R IS ET R+ + +++ Y +NG +V+ K RD +K F K +
Sbjct: 22 LTKRGISEETCRKAGYWIAKVNNQMYQVADYRDQNGSIVSQKIRDKDKNFKTTGKHSPDA 81
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+ G I++ EGE+D L++ E V G S +KK + +
Sbjct: 82 LFLKHLWNGGKKIVVTEGEIDALTVMELQDCKYPVVSIGHGSKAAKKTLAANFD------ 135
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q IIL D D PG+ EE A + + P KDANE
Sbjct: 136 ------YFDQFDEIILMFDMDEPGRIAIEECAPVLPSGKVRVAVLPD-------KDANEC 182
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNEL- 291
++ AL E + NA + G+ + D + S E G+ TG ALN+L
Sbjct: 183 MLNGNQKALMEQIWNASPWVPDGVVSAISLKDRVREAMQ--SAKEVGLLFTGNPALNDLT 240
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKH 349
GE+ ++T GKS + + G K LC++E V E L L+ +
Sbjct: 241 LGARLGEVIMITSGSGMGKSTFARQQMLQWGRE-GIKVGLCALEESVEETVEDLMGLDNN 299
Query: 350 IKKPFFEANYGGSAERMTVEEFEQGKAWL--SNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
++ N + + F+ L S+ F L DS + AK A +
Sbjct: 300 VR---LRQNKEMREQILADGRFDSWYDALFDSDMFHLY----DSFAESQEDRLFAKMAYM 352
Query: 408 RHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
G+ VI LDH V E + + +++T +K FA+ C V + H +
Sbjct: 353 VDGLGCKVI----LLDHISIVVSGSEESDERKMIDRLMTKLKSFAKSKGCVVVVICHLKN 408
Query: 463 LHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
G P ++ D+ GS D I + R++ + + V +R ++ +
Sbjct: 409 PEKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERDQQGDNPNV----VQLRLLKCRFT 464
Query: 519 GTIGEA-FLSYNRVTG 533
G G A + Y+++TG
Sbjct: 465 GDTGIAGHMEYDKLTG 480
>gi|456738218|gb|EMF62895.1| DNA primase/helicase [Stenotrophomonas maltophilia EPM1]
Length = 488
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 172/416 (41%), Gaps = 55/416 (13%)
Query: 56 FAERLISAETLRRNR--VMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV 113
A+R I+ E R+ + + +HG V IA Y R+G +V K R +KKF D++
Sbjct: 12 LAKRGITEEACRKYGYWIGKDKHGKTVQIA-NYKRDGGIVAQKLRYPDKKFSFIGDSKAC 70
Query: 114 -FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVSKKNVPSEEQDTK 170
+G E ++I EGE+D LS+ +A L VSVP+GA + K++ E +
Sbjct: 71 GLFGQHLYEPGRRLVITEGEIDALSVAQALGLRWPVVSVPNGAQGAA--KSIKRELE--- 125
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
++ ++L D D PGQA A+E+A + + + P KD
Sbjct: 126 ---------WVNGFDEVVLMFDMDEPGQAAAQEVALLLTPGKAKIAQLPA-------KDP 169
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW---RA 287
NE+L A+ + A+ G+ F + + W R
Sbjct: 170 NELLQRGDAEAITRAIYEAQTKRPDGVVTF--------GSLKEKALKPVSMGMPWHDPRL 221
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
Y GE+ GK++W+ I + G + L +E + E A+++
Sbjct: 222 TALTYGKRYGEVYTFGAGTGIGKTDWLMEEAAFIAQETGDRVGLFFLEQQPVETAKRMAG 281
Query: 348 KHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
K + F + + E + E ++G+ ++ + F S +W + AK A
Sbjct: 282 KVAGRRFHVPDGSWTQEELEAAFEILDKGQVFIYDHFG----------SSEWDVIEAKMA 331
Query: 406 --VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
V+ GV+ +V+D L ++ E + + + + +FAQ H ++ V+H
Sbjct: 332 HMVVAEGVKHIVLD---NLTSFAAGAEDERKMLEDTMAKIAQFAQRHLICIYLVSH 384
>gi|326536927|ref|YP_004306334.1| putative primase/helicase [Pseudomonas phage phiIBB-PF7A]
gi|318054503|gb|ADV35679.1| putative primase/helicase [Pseudomonas phage phiIBB-PF7A]
Length = 563
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 107/470 (22%), Positives = 186/470 (39%), Gaps = 51/470 (10%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFW-QEKDTEKVFYGLDDIEGESDIIIVEGEMDK 135
G +A Y + LV K RD +K+F+ K + +G G I++ EGE+D
Sbjct: 101 GESKQVANYYDMDRNLVAQKVRDRHKEFFIAGKMPKDGLFGKHLWTGGKKIVVTEGEIDC 160
Query: 136 LSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
L++ + G VS+P GA +D K N + Y Q +IIL D
Sbjct: 161 LTVAQIQGGKYPVVSIPRGA-------------EDAKKVCAANFE-YFNQFEQIILMFDM 206
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D PG+A + E A + + P KD NE L+ A+ + + NA Y
Sbjct: 207 DAPGRAASLEAADVLPAGKVHIAVLP-------LKDPNECLLAGNSKAVIDQIWNAPKYV 259
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEW 313
G+ + + I A S G E+ GE+ +VT SGKS +
Sbjct: 260 PDGVVSALSLKERIKAKKVVASMPLVGPEELREMTKEIRG---GEVILVTSGSGSGKSTY 316
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+ N+ ++ + +E V E + ++ H+ + N + E M F++
Sbjct: 317 VRQNTYNLFHYSKIAVGVAMLEESVEETVQDIVGLHMGCRVRQ-NPDETTEEMFDRAFDE 375
Query: 374 GKAWLSNTFSLI-----RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+ SN L E+ L + +++D+ G R +V+D + +
Sbjct: 376 --IFASNMLHLYDAFAESAEDRLLARLNYMVDV-------EGCRVIVLDHVSIVVSAMDG 426
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFIN 484
E + + +++T +K FA+ V+ + H + G P D+ GS
Sbjct: 427 ETDERKMIDRLMTKLKTFAKTKDVAVFVICHLKNPDKGKPHEEGRPVTATDLRGSGGLRQ 486
Query: 485 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + R R ++ + G G A ++ Y+++TG
Sbjct: 487 LSDTIIAVERNQQGSNPNLIR----FRLLKCRFTGETGIAGYMEYDKLTG 532
>gi|326536124|ref|YP_004300553.1| gp4a [Enterobacteria phage 285P]
gi|256861513|gb|ACV32469.1| gp4a [Enterobacteria phage 285P]
Length = 570
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 197/486 (40%), Gaps = 71/486 (14%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANFE------------YFDQFDEIILM 208
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 251 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFFEANYGGSAER 365
GKS ++ + + G K L +E V E + L L H++ +
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLR--------QDKE 369
Query: 366 MTVEEFEQGK--AW---LSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418
+ ++ E G+ W L NT F L DS + AK A + G+ VI
Sbjct: 370 LKMQILEDGRFDEWYDVLFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNVI-- 423
Query: 419 YNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----G 468
LDH V + E + + +++T +K FA+ V + H + G
Sbjct: 424 --LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAHEEG 481
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLS 527
P ++ D+ GS D I + RN+ + + V +R ++ + G G A ++
Sbjct: 482 RPVSITDLRGSGALRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAGHMA 537
Query: 528 YNRVTG 533
YN+ TG
Sbjct: 538 YNKETG 543
>gi|37956717|gb|AAP33986.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 113/467 (24%), Positives = 190/467 (40%), Gaps = 61/467 (13%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCVANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQ--GKAW 377
G K L +E V E A L+ H + +++ S +R +E +F+Q + +
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKRKIIENGKFDQWFDELF 323
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----E 432
++TF L DS + LAK A + G+ VI LDH V E
Sbjct: 324 GNDTFHLY----DSFAEAETDRLLAKLAYMCSGLGCDVI----ILDHISIVVSASGESDE 375
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCD 487
+ + ++T +K FA+ + + H + + H G P ++ D+ GS D
Sbjct: 376 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSD 434
Query: 488 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 435 TIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|451989081|gb|AGF91554.1| hypothetical protein PRRG_00045 [Prochlorococcus phage P-RSP2]
Length = 533
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 118/519 (22%), Positives = 211/519 (40%), Gaps = 62/519 (11%)
Query: 38 ITEDSLELEP-LGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGK-LVNC 95
+T E+EP +GN + R IS +T + + HG E + + N + L
Sbjct: 44 MTSSIKEIEPVIGNYVP--IKNRSISVDTCKFFGYQKGMHGGEPAYYWAIYDNQRRLTGY 101
Query: 96 KYRDFNKKF-WQEKDTEKVFYGLDD-IEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPD 151
K R NK+F Q + + F G + G ++I EGE D LS EA + CVS+P+
Sbjct: 102 KIRKPNKQFLMQGSNPDSRFLGQEKWGSGGKLLVIFEGEYDALSYAEARNRSWACVSLPN 161
Query: 152 GAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRE 211
G V S + K Q W + IIL D D G+ A+ + +
Sbjct: 162 G---------VESGNKTLKAQLPW-----VLTFETIILCYDNDEHGKKAAQRDIQLLPPR 207
Query: 212 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI--DA 269
R K V+ +KDA+E L A+ +V +A Y G+ N D++ D
Sbjct: 208 R------GKIGTVEGYKDASEALTANDNKAIMRMVYDAVEYEPDGIVNASKLLDKVLEDP 261
Query: 270 YYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
H + LN+ L + GEL +V GKS +++ + ++ G
Sbjct: 262 EVHS-------YEYPYSFLNDKLKGIRLGELVLVCSGTGIGKSTFVNEIAYDLLVRQGQT 314
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ----GKAWLSNTFSL 384
+ ++E R A++ + ++ P + G + F + G+ +L + F
Sbjct: 315 VGVIALEENNRRTAQRFISINLNYP-IHIHRGDITDEEIKNAFSKTLGSGRLYLYDHFGS 373
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+ + +L+ + ++ G R ++ D + L S E + + + +T ++
Sbjct: 374 L--------DVNTMLNRIRHLIVSMGCRFIIFDHLSILVSGLDESD-ERKAIDKCVTKLR 424
Query: 445 RFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRN-RDPE 499
+ C + V+H R+ G+ +L I GS+ D I + R+ +D E
Sbjct: 425 SLVEETGCSMILVSHLRRPQGNKGYEDGQQTSLSGIRGSSAIACLSDICIGLERDQQDTE 484
Query: 500 AGPIDRVQVCVRKVRNKVVGTIG-EAFLSYNRVTGEYMD 537
+G VR ++N+ G G ++Y+ TG ++
Sbjct: 485 SGE----GTVVRTLKNRFTGWTGVTGKVNYDEHTGRMLE 519
>gi|194100271|ref|YP_002003469.1| gp4A [Enterobacteria phage BA14]
gi|193201266|gb|ACF15746.1| gp4A [Enterobacteria phage BA14]
Length = 570
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/489 (24%), Positives = 193/489 (39%), Gaps = 77/489 (15%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANYE------------YFDQFDEIILM 208
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 251 LYPIMGLFNFRDYFDEIDAYY--HRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVRE----------HARKLLEKHIKKPFFEA 357
GKS ++ + + G K L +E V E H R +K +K E
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLRQDKELKMRILED 377
Query: 358 NYGGSAERMTVEEFEQGKAWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
F++ L NT F L DS + AK A + G+ V
Sbjct: 378 G-----------RFDEWYDVLFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNV 422
Query: 416 IDPYNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV-- 467
I LDH V + E + + +++T +K FA+ V + H +
Sbjct: 423 I----LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKAH 478
Query: 468 --GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA- 524
G P ++ D+ GS D I + RN+ + + V +R ++ + G G A
Sbjct: 479 EEGRPVSITDLRGSGALRQLSDTIIALERNQQGDYPNL----VQLRVLKCRFTGDTGVAG 534
Query: 525 FLSYNRVTG 533
++YN+ TG
Sbjct: 535 HMAYNKETG 543
>gi|448937001|gb|AGE60545.1| DNA primase [Pelagibacter phage HTVC011P]
Length = 534
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 123/494 (24%), Positives = 209/494 (42%), Gaps = 61/494 (12%)
Query: 59 RLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGL 117
R I++ET ++ N G V IA Y ++ V K R +K+F D +K+
Sbjct: 74 RKINSETCKKFNYETGTYKGEPVHIANYYDKDYNKVAQKLRFADKRFIWLGDPDKITLFG 133
Query: 118 DDI--EG--ESDIIIVEGEMDKLSME--EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
+ EG +S II+ EGE+D LS+ + S+P G+ S +KK + E Q
Sbjct: 134 QQVWREGGEKSKIILTEGELDCLSVSAVQGNKYPVCSIPSGSAS--AKKFIKKELQ---- 187
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
+L + S IIL D D G + E+A + + R P KD +
Sbjct: 188 --------FLSKFSSIILMFDTDEAGVKASVEVANLLPVRKVKIARLPA-------KDPS 232
Query: 232 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNE 290
E+L + + + A+ Y G+ D D + + +E I W LNE
Sbjct: 233 ELLQKGQGSKIIDAMWEAKAYTPQGIIQGSDTKDLL------LNDEEVETIPYLWNGLNE 286
Query: 291 -LYNVLPGELTIVTGVPNSGKSEWID--ALICNINEH-AGWKFVLCSMENKVREHARKLL 346
L + GEL ++ G +GKS+ A C + H G+ + S++ +R L
Sbjct: 287 KLQGIRFGELNLLCGGSGTGKSQMCREIAYDCILKGHKVGYIALEESVKRSIRGIVSVGL 346
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKA 404
I P + S E++ +EEF++ K ++ + F E D + I++++
Sbjct: 347 NAQIHNPEVRKKF--SNEKL-LEEFDKVKDNIAFYDHFGSSDSE-DLMNRIRYMVQSLDC 402
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ-- 462
V+ +VI ++ D +R + T TE +++ + C ++ V+H ++
Sbjct: 403 KVIILDHISIVISGLHDGDERRLIDNTMTE--------LRKLVEEVKCAMFVVSHLKRPS 454
Query: 463 --LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
L + G +L + GS D I RN+ E + + VR ++N+ G
Sbjct: 455 GNLGHEEGVQTSLSHLRGSHALAQLSDAVIGFERNQQHET---ESNIMIVRVLKNRFSGE 511
Query: 521 IGEAF-LSYNRVTG 533
G A L YN+VTG
Sbjct: 512 TGVATSLIYNKVTG 525
>gi|255313150|ref|ZP_05354733.1| replicative DNA helicase [Clostridium difficile QCD-76w55]
gi|384359021|ref|YP_006196876.1| replicative DNA helicase [Clostridium difficile BI1]
Length = 443
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 16/258 (6%)
Query: 273 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN--INEHAGWKF 329
R G I TG+ LN + + G LTI+TG P SGKS ++ I +N+ + +
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAEAIVNKEKAFLY 216
Query: 330 VLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 387
E RK + + HIK+ +++ YGG+ + E W+ + L
Sbjct: 217 SGELPAFMAMEWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIED--KLFLY 272
Query: 388 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K A
Sbjct: 273 DEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLKNLA 330
Query: 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 331 KKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDDTYL 388
Query: 508 VCVRKVRNKVVGTIGEAF 525
+ ++N++ G +F
Sbjct: 389 LI---LKNRITGKQNISF 403
>gi|212671399|ref|YP_002308398.1| DNA primase/helicase [Kluyvera phage Kvp1]
gi|211997243|gb|ACJ14560.1| DNA primase/helicase [Kluyvera phage Kvp1]
Length = 569
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 122/486 (25%), Positives = 196/486 (40%), Gaps = 71/486 (14%)
Query: 74 KRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIVEGE 132
K +G + +A Y G LV K RD NK+F + K + +G G I++ EGE
Sbjct: 103 KVNGEMLQVANYYDVEGNLVGQKVRDKNKEFSAKGKLKADLLFGKQLWNGGKKIVVTEGE 162
Query: 133 MDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILA 190
+D L++ + G VS+P GA ++ KK + + Y Q IIL
Sbjct: 163 IDCLTVAQLQEGKYPVVSLPMGAQAA--KKTCAANYE------------YFDQFDEIILM 208
Query: 191 TDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
D D PG+ EE A + + P KDANE L+ A+ + + NA+
Sbjct: 209 FDMDEPGRKAIEECAPVLPSGKVRVAVLP-------LKDANECLLNGQAKAVTDQIWNAQ 261
Query: 251 LYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPN 307
+ G+ + D + T+G F TG LN++ GE+ +VT
Sbjct: 262 PWVPDGVVSAVSLKDRVREAMVKEETTGLLF---TGQPKLNDMTLGARGGEVIMVTSGSG 318
Query: 308 SGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFFEANYGGSAER 365
GKS ++ + + G K L +E V E + L L H++ +
Sbjct: 319 MGKSTFVRQQMLMWGK-GGAKVGLAMLEEAVEETVQDLMGLNNHVRLR--------QDKE 369
Query: 366 MTVEEFEQGK--AW---LSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418
+ ++ E G+ W L NT F L DS + AK A + G+ VI
Sbjct: 370 LKMQILEDGRFDEWYDVLFNTDMFHLY----DSFAESQEDRLFAKLAYMVDGLDCNVI-- 423
Query: 419 YNELDHQRPV------SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----G 468
LDH V + E + + +++T +K FA+ V + H + G
Sbjct: 424 --LLDHISIVVSGMEDNSDERKTIDRLMTKLKAFAKTKGVVVVVICHLKNPEKGKSHEEG 481
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLS 527
P ++ D+ GS D I + RN+ + + V +R ++ + G G A +
Sbjct: 482 RPVSITDLRGSGSLRQLSDTIIALERNQQGDYPNL----VQLRILKCRFTGDTGIAGHMV 537
Query: 528 YNRVTG 533
YN+ TG
Sbjct: 538 YNKETG 543
>gi|26988994|ref|NP_744419.1| DNA primase/helicase [Pseudomonas putida KT2440]
gi|24983814|gb|AAN67883.1|AE016420_5 DNA primase/helicase [Pseudomonas putida KT2440]
Length = 544
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 204/508 (40%), Gaps = 90/508 (17%)
Query: 58 ERLISAETLRR-NRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQEKDTEKV-F 114
+R ++ ET R+ + + G V +A PY+ N G +V K RD +K F D K+
Sbjct: 75 KRKLTLETCRKFGYFVSEVRGRLVQVA-PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTL 133
Query: 115 YGLDD-IEGESDIIIVEGEMDKLSMEEA--GFLNCVSVPDGAPSS--VSKKNVPSEEQDT 169
+G + G I++ EGE+D +S+ + VS+P+GAP++ ++N+
Sbjct: 134 FGQNLWASGGKKIVVTEGELDAMSVSQVQNNKWPVVSLPNGAPAARKAIQRNIE------ 187
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
YL+ +IL D D PG+ A+E A +C K KD
Sbjct: 188 ----------YLESFEEVILMFDMDEPGREAAQECAELFSPGKC-------KIATLSMKD 230
Query: 230 ANEVLMYLGPGALKEVVE---NAELYPIMGLFNFRDYFDEI------------DAYYHRT 274
ANE+L+ G +E+V NA+LY G+ N RD +EI D T
Sbjct: 231 ANELLV---AGREQEIVTAIWNAKLYRPDGVVNVRDLLEEIRKALVMGLPWFLDPLTQLT 287
Query: 275 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334
G +G E+Y + G TGV GK++++ I + G + +
Sbjct: 288 YGRRYG---------EVYGLGAG-----TGV---GKTDFLTQQIAYDIQVLGERVGTIFL 330
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 394
E K E A+++ K K F T EE + L + D+
Sbjct: 331 EQKPTETAKRVAGKIAGKRFHVPK---DTAGWTDEELDAAVDALGENLVMY----DAFGE 383
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS--QMLTMVKRFAQHHAC 452
+W D+ K V V + Y +DH ++ T E S Q++ + A
Sbjct: 384 TEW--DIVKRKVRYMAVSEGIKLIY--IDHLTAMADTADEKGSLEQIMKEMAGLANELGI 439
Query: 453 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG----IVIHRNRDPEA-GPIDRVQ 507
+ F++H L G+P HF G + RD +A P+ R
Sbjct: 440 IITFISH---LTTPEGKPHEEGGRVTIRHFKGSRAIGFWSYFMFGLERDQQAEDPVVRQT 496
Query: 508 VCVRKVRNKVVG-TIGEA-FLSYNRVTG 533
R ++++ G GE +L+Y+R TG
Sbjct: 497 TTFRILKDRYTGQATGEVLYLAYDRDTG 524
>gi|423080703|ref|ZP_17069321.1| replicative DNA helicase [Clostridium difficile 002-P50-2011]
gi|357552553|gb|EHJ34324.1| replicative DNA helicase [Clostridium difficile 002-P50-2011]
Length = 442
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 273 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
R G I TG+ LN + + G LTI+TG P SGKS ++ I + G K L
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITN-GEKAFL 215
Query: 332 CSME---NKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
S E + RK + + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 216 YSGELPSFMAMDWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIKDKFFL-- 271
Query: 387 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+ D++ +L+ + L+ GVR V+D L + + E Q+++ +K
Sbjct: 272 YDEDAISDEVNLLNTIEHLYLKKGVRFFVLD---NLMTIKTGKADKYERQEQIVSNLKNL 328
Query: 447 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 506
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 329 AKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVVDEEEETDDTY 386
Query: 507 QVCVRKVRNKVVGTIGEAF 525
+ ++N++ G +F
Sbjct: 387 LLI---LKNRITGKQNISF 402
>gi|423084778|ref|ZP_17073275.1| replicative DNA helicase [Clostridium difficile 050-P50-2011]
gi|357551591|gb|EHJ33378.1| replicative DNA helicase [Clostridium difficile 050-P50-2011]
Length = 442
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 118/259 (45%), Gaps = 19/259 (7%)
Query: 273 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
R G I TG+ LN + + G LTI+TG P SGKS ++ I + G K L
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAQAITN-GEKAFL 215
Query: 332 CSME---NKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
S E + RK + + HIK+ +++ YGG+ + E W+ + F L
Sbjct: 216 YSGELPSFMAMDWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIKDKFFL-- 271
Query: 387 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+ D++ +L+ + L+ GVR V+D L + + E Q+++ +K
Sbjct: 272 YDEDAISDEVNLLNTIEHLYLKKGVRFFVLD---NLMTIKTGKADKYERQEQIVSNLKNL 328
Query: 447 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 506
A+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 329 AKKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVIDEEEETDDTY 386
Query: 507 QVCVRKVRNKVVGTIGEAF 525
+ ++N++ G +F
Sbjct: 387 LLI---LKNRITGKQNISF 402
>gi|255103064|ref|ZP_05332041.1| replicative DNA helicase [Clostridium difficile QCD-63q42]
Length = 443
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 16/258 (6%)
Query: 273 RTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN--INEHAGWKF 329
R G I TG+ LN + + G LTI+TG P SGKS ++ I +N+ + +
Sbjct: 157 REKGVHKSIDTGFNKLNNMLDGFRYGTLTILTGKPASGKSTIVNQFIAEAIVNKEKAFLY 216
Query: 330 VLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 387
E RK + + HIK+ +++ YGG+ + E W+ + L
Sbjct: 217 SGELPAFMAMEWFRKTVANDYHIKE--YKSVYGGTYTDIPDYASELISDWIED--KLFLY 272
Query: 388 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447
+ D++ +L+ + L+ GVR V+D + + E + Q+++ +K A
Sbjct: 273 DEDAISDEVNLLNTIEHLYLKKGVRFFVLDNLMTIKTGNKADKYERQ--EQIVSNLKNLA 330
Query: 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
+ + + VAHPR+ N P +YD+SG++ +N D + +R D E D
Sbjct: 331 KKYNLVIVLVAHPRK--NMGDMKPTMYDVSGASEIVNYADYILSTYRVIDEEEEADDTYL 388
Query: 508 VCVRKVRNKVVGTIGEAF 525
+ ++N++ G +F
Sbjct: 389 LI---LKNRITGKQNISF 403
>gi|388549268|gb|AFK66467.1| primase/helicase [Synechococcus phage S-CBP3]
Length = 535
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 111/474 (23%), Positives = 188/474 (39%), Gaps = 62/474 (13%)
Query: 81 VIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSM 138
V+ F Y+ +G L CK + NK F E + +G ++I EGE+D S
Sbjct: 95 VLRFHYFDSSGILKGCKVKTKNKVFSYEGEVPGTLFGQHLFPSSGKRVVITEGELDAASC 154
Query: 139 EE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
+E +G+ VS+P GA +KK+V + Y W L+ I+L D D
Sbjct: 155 QEVMSGW-PMVSLPGGA--GTAKKSV-------QRAYEW-----LQGYEEIVLFFDNDEA 199
Query: 197 GQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMG 256
G+ EE A + +C +KDA++ L P A++ + +A+ Y G
Sbjct: 200 GRKATEEAASVLPPGKCKIASLQGD-----YKDASDALSANDPEAVRRAIWDAKPYRPDG 254
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWID 315
+ + + + + T + L ++L+ + GEL +T GKS +
Sbjct: 255 IVDGKSLLELV-----TTPSPPADFDYPFSGLQDKLHGIRMGELVTITAGSGIGKSSFCR 309
Query: 316 AL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372
L + N E G+ ++E R A L+ + K + G ER T+ E
Sbjct: 310 ELATTLLNKGERVGY----LALEESNRRTALGLMSAAVGKSL----HLGEHERSTLTEAY 361
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH----QRPV 428
Q N F D S + + L G+ VI LDH +
Sbjct: 362 QATLANWNLFLF-----DGFGSFDPDIIYNRIEYLAAGLDTRVI----FLDHLSILLSGL 412
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL----HNWVGEPPNLYDISGSAHFIN 484
E + + Q +T ++ + ++ V+H R+ ++ G L + GSA
Sbjct: 413 DGDERKMIDQTMTRLRSLVERTGIALFLVSHLRRTTSDQNHEEGARVTLGQLRGSAAIAQ 472
Query: 485 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTGEYMD 537
D I + RN+ + D VR ++N+ G +G A LSY+ T ++ +
Sbjct: 473 LSDGVIALERNQQSTSTGSD---TTVRVLKNRYSGEVGVACRLSYDLSTCKFYE 523
>gi|410895163|ref|XP_003961069.1| PREDICTED: twinkle protein, mitochondrial-like [Takifugu rubripes]
Length = 715
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 111/487 (22%), Positives = 192/487 (39%), Gaps = 86/487 (17%)
Query: 37 EITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG------ 90
++ ED +L ++ F IS TL+R V R +V+ W G
Sbjct: 194 DLPEDEAQL------VKTMFQISKISNATLKRFGVRLFRPTKSLVLP---WFGGPDSSLK 244
Query: 91 --KLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSMEEAG 142
KL++ + D + E K +GL + ++D+++ E+D +++ +A
Sbjct: 245 GVKLLSAQSTDSGSVAYNEATVPKSNSYYNLFGLHLVGRKDTDVVLTGHELDTMAVSQAT 304
Query: 143 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202
L V++P G S + +P YL+Q R+ L GD ++
Sbjct: 305 GLPSVALPRGV-SCLPPILLP----------------YLEQFKRVTLWLGGDIRSWEASK 347
Query: 203 ELARRVGRERCWRVRWP---KKNDVDHF---KDANEVLMYLGPGALKEVVENAELYPIMG 256
+R++G RC VR P + ++ F K+ ++ P A K +V +L
Sbjct: 348 IFSRKLGLRRCSLVR-PGEYRPCPLEAFAMGKNFGHIIKSSIPAAHKSIVSFKQL----- 401
Query: 257 LFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSE 312
RD D Y + D+ W EL +L G ELT+ TG SGK+
Sbjct: 402 ----RD-----DVYGELMNTDQVA-GVKWMRFPELTRILKGHRKGELTVFTGPTGSGKTT 451
Query: 313 WIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
+I + ++ G + S E N VR L K + F + +R+ +
Sbjct: 452 FISEVALDLCMQ-GVNTLWGSFEINNVR------LAKIMLTQF-------AMQRLE-DNL 496
Query: 372 EQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
EQ W N L +IK VLD + AV + + ++ID + Q +S
Sbjct: 497 EQYDFWADNFEELPLYFMTFHGQQNIKAVLDTMQHAVYMYDINHVIIDNLQFMMGQENLS 556
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
+ ++ ++FA +CHV + HPR+ + + I GSA + DN
Sbjct: 557 VDKFAVQDHIIGAFRKFATSSSCHVTLIIHPRKEED--DRELQMASIFGSAKASQEADNV 614
Query: 490 IVIHRNR 496
+++ +
Sbjct: 615 LILQEKK 621
>gi|210621023|ref|ZP_03292408.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
gi|210155007|gb|EEA86013.1| hypothetical protein CLOHIR_00351 [Clostridium hiranonis DSM 13275]
Length = 448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 115/245 (46%), Gaps = 15/245 (6%)
Query: 281 ISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---N 336
I TG+R L+ + + G LT+++G P +GKS I+ + + + G K +L S E
Sbjct: 170 IPTGFRKLDGVMDGFRYGTLTVLSGKPGAGKSTIINQFLASAID-VGQKAMLYSGELPSK 228
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
V + RK + ++ YG + + E + W+ L D + + K
Sbjct: 229 TVMDWFRKCVVSECDIKKYQTMYGAKFNAPSEQARELIREWIRG--KLFIYSEDVIANEK 286
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
+ + + L+HGVR VID L V + E++ + ++ +K A+ + +
Sbjct: 287 NMCGVIEHLWLKHGVRMFVIDNLMTLSMDNQVDKYESQKL--LVRDLKNLAKKYGLVIIL 344
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNK 516
VAHP++ +++D+SG++ +N CD + ++R D E G D + V ++N+
Sbjct: 345 VAHPKKTKE---RNIDMFDVSGASEIVNLCDYELFLNRVVDDERGT-DETFLTV--LKNR 398
Query: 517 VVGTI 521
V G +
Sbjct: 399 VTGKV 403
>gi|432924944|ref|XP_004080672.1| PREDICTED: twinkle protein, mitochondrial-like [Oryzias latipes]
Length = 724
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 112/480 (23%), Positives = 194/480 (40%), Gaps = 96/480 (20%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG--------KLVNCKYRDFNKK 103
++ F IS TL+R V + +V FP W G KL++ + D +K
Sbjct: 206 IKTMFQITKISNATLKRFGVKLFKPTKSLV--FP-WVGGPDSSLKGIKLLSAQRTDGDKV 262
Query: 104 FWQEKDTEKV-----FYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
+ E K +GL I +S++++ E+D L++ +A L V++P G S +
Sbjct: 263 TYNEATFPKFSSYYCLFGLTLISRMDSEVVLTGHELDCLAVSQATGLPSVALPRGV-SCL 321
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+P YL+Q R+ L GD ++ +R++ +RC VR
Sbjct: 322 PPILLP----------------YLEQFKRVTLWLGGDIRSWEASKIFSRKLAMKRCSLVR 365
Query: 218 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM---------GLFNFRDYFDEID 268
P + P L+ +V+N L I+ + +F+ + D
Sbjct: 366 -PGEYQ---------------PQPLEALVQNKNLSRIIKGSIPASHKSIVSFKQLRE--D 407
Query: 269 AYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEH 324
Y + D+ W EL +L G ELT+ TG SGK+ +I L ++
Sbjct: 408 VYGELLNTDQVA-GVKWTRFPELNRILKGHRKGELTVFTGPTGSGKTTFISELALDLCMQ 466
Query: 325 AGWKFVLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
G + S E N VR + A + LE +++K F A ++FEQ
Sbjct: 467 -GVNTLWGSFEINNVRLAKIMLTQFAMERLEDNLEKYDFWA-----------DKFEQ--- 511
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436
L F + + IK VLD + AV + + ++ID + Q +S +
Sbjct: 512 -LPLYFMTFHGQQN----IKTVLDTMEHAVYLYDINHIIIDNLQFMMGQENLSIDKFAVQ 566
Query: 437 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496
++ + ++FA + +CHV + HPR+ + I GSA + DN +++ +
Sbjct: 567 DHIIGVFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKASQEADNVLILQEKK 624
>gi|313892493|ref|ZP_07826082.1| DNA primase/helicase [Dialister microaerophilus UPII 345-E]
gi|313119072|gb|EFR42275.1| DNA primase/helicase [Dialister microaerophilus UPII 345-E]
Length = 537
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 127/556 (22%), Positives = 224/556 (40%), Gaps = 70/556 (12%)
Query: 7 CGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETL 66
C GS AL S S FS I++ D++ + P + + + +R I+ T
Sbjct: 11 CNTCGSHDALC--TYSDGSTYCFSCNTCIQKGNNDTVTI-PQDSLVISSLKKRGITKATC 67
Query: 67 RR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYG--LDDIEGE 123
+ + K + +A Y NG+ + K R +K F E F+G L
Sbjct: 68 HKYGYYISKNAKTPMQVACYYDDNGECIGKKIRYPDKHFAVEGTISHRFFGQHLWANGHM 127
Query: 124 SDIIIVEGEMDKLSMEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
++I EGE+D L++ + CVS+P+GA S+ K V E + +L
Sbjct: 128 KKLVITEGEIDCLTVSQLQENKYPCVSIPNGAASA---KKVFKENME-----------WL 173
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
+I+ D D G+ E++ + + P KD NE L+ G
Sbjct: 174 NTFEEVIVMFDMDEAGRKAVEDVQGLLKPRKLKIANLP-------LKDPNECLI---AGR 223
Query: 242 LKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPG 297
+EV+ NA+ Y G+ N +D ++ I T EF T LN++ + G
Sbjct: 224 GQEVILAIWNAKAYKPDGIINGKDTWELISKAEEETKCYEFPWET--LPLNKMTLGMRKG 281
Query: 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357
EL I+T GK+ +I + ++ K + +E ++ + L+ K +
Sbjct: 282 ELLILTAGTGVGKTTFIRQIAYDLGVKKKLKIGMLMLEENIKRTIKGLMSVASGKRLYIN 341
Query: 358 NYGGSA---ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRH-- 409
G S +R E G L F + EN + I++ + LA+ +L H
Sbjct: 342 RQGLSDKEYKRCFDEVMGNGNYILYEHFGSLSGEN-LMDKIRY-MTLAEQCDFIILDHIS 399
Query: 410 -GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV- 467
+ GL E D++R + + ++T ++ + + ++H R+L N
Sbjct: 400 IAISGL------EGDNERKL-------IDILMTQMRSLVEETGVGMLVISHLRRLSNEST 446
Query: 468 ----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
G +L + GS D I + RN+ +A + R V +R ++N+ G G
Sbjct: 447 SHEEGGATSLSQLRGSGAIAQLADTVIGLERNQ--QAQGMQRNMVRIRVLKNRYTGETGI 504
Query: 524 A-FLSYNRVTGEYMDI 538
A +L Y++ T ++
Sbjct: 505 AGYLQYSKETDRLTEV 520
>gi|39654615|pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654616|pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654617|pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654618|pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654619|pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654620|pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
gi|39654621|pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 185/474 (39%), Gaps = 75/474 (15%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT S ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 379
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 380 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 431 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 480
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|325272848|ref|ZP_08139185.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
gi|324102053|gb|EGB99562.1| DNA primase/helicase [Pseudomonas sp. TJI-51]
Length = 483
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 127/508 (25%), Positives = 205/508 (40%), Gaps = 90/508 (17%)
Query: 58 ERLISAETLRR-NRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQEKDTEKV-F 114
+R ++ ET R+ + + G V +A PY+ N G +V K RD +K F D K+
Sbjct: 14 KRKLTLETCRKFGYFVSEVRGRLVQVA-PYFDNSGVMVAQKLRDQDKGFAILGDGAKLTL 72
Query: 115 YGLDD-IEGESDIIIVEGEMDKLSMEEA--GFLNCVSVPDGAPSS--VSKKNVPSEEQDT 169
+G + G I++ EGE+D +S+ + VS+P+GAP++ ++N+
Sbjct: 73 FGQNLWASGGKKIVVTEGELDAMSVSQVQNNKWPVVSLPNGAPAARKAIQRNIE------ 126
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
YL+ +IL D D PG+ A+E A +C K KD
Sbjct: 127 ----------YLESFEEVILMFDMDEPGREAAQECAELFSPGKC-------KIATLSMKD 169
Query: 230 ANEVLMYLGPGALKEVVE---NAELYPIMGLFNFRDYFDEI------------DAYYHRT 274
ANE+L+ G +E+V NA+LY G+ N RD +EI D T
Sbjct: 170 ANELLV---AGREQEIVTAIWNAKLYRPDGVVNVRDLREEIRKALVMGLPWFLDPLTQLT 226
Query: 275 SGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334
G +G E+Y + G TGV GK++++ I + G + +
Sbjct: 227 YGRRYG---------EVYGLGAG-----TGV---GKTDFLTQQIAYDIQVLGERVGTIFL 269
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 394
E K E A+++ K K F + T EE + L + D+
Sbjct: 270 EQKPTETAKRVAGKIAGKRF---HVPKETAGWTDEELDAAVDALGENLVMY----DAFGE 322
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS--QMLTMVKRFAQHHAC 452
+W D+ K V V + Y +DH ++ T E S Q++ + A
Sbjct: 323 TEW--DIVKRKVRYMAVSEGIKLIY--IDHLTAMADTADEKGSLEQIMKEMAGLANELGI 378
Query: 453 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG----IVIHRNRDPEA-GPIDRVQ 507
+ F++H L G+P HF G + RD +A P+ R
Sbjct: 379 IITFISH---LTTPEGKPHEEGGRVTIRHFKGSRAIGFWSYFMFGLERDQQAEDPVVRQT 435
Query: 508 VCVRKVRNKVVG-TIGEA-FLSYNRVTG 533
R ++++ G GE +L+Y+R TG
Sbjct: 436 TTFRILKDRYTGQATGEVLYLAYDRDTG 463
>gi|429328448|gb|AFZ80208.1| DNA polymerase I family member protein [Babesia equi]
Length = 1713
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 107/430 (24%), Positives = 171/430 (39%), Gaps = 71/430 (16%)
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
+ +++ EGE D +S+ + +S+P+G+ +S+ +P E + + YLW
Sbjct: 435 SQKTVVLAEGEFDAMSIYQETGQPSLSLPNGS-NSLPVALLPRLE-NLDHIYLW------ 486
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVR------WPKKNDVDHFKDANEVLM 235
D D GQ+ A ++G +R VR P+ KDANE L
Sbjct: 487 ---------MDFDAAGQSGITHFANKLGMQRTKIVRDISEKVNPEDEQERGAKDANECL- 536
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNEL 291
L + +ENA + NF D FDE+ + TSG E G L L
Sbjct: 537 -LKGLKIAPYLENASPLVHSQILNFNDIRQSVFDEL-SNPKATSGVESLTLPGLSQL--L 592
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHI 350
GEL++ TG SGK+ + L + G + S E N VR A+ +L +
Sbjct: 593 KGHRRGELSVWTGSTGSGKTTLLSQLSLDYCVQ-GVSTLWGSFEINNVR-LAKTMLRQ-- 648
Query: 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLAKAAVL 407
+ G ++EEF + ++ FS L + SI V+D AV
Sbjct: 649 --------FSGKNLETSIEEFN----YYADKFSELPLRFMKFHGSTSIDQVIDAMDYAVY 696
Query: 408 RHGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+ VR ++ID L Q + + + +RFA H HV V HPR+ +
Sbjct: 697 VYDVRHIIIDNLQFMLSGQNSKPGELWDLQNSAIEKFRRFATHKNVHVSLVVHPRKEAD- 755
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIH----RNRDPEAGPIDRVQVCVRKVRNKVVGTIG 522
G P L + GS + DN +++ NR C+ +N+ G +G
Sbjct: 756 -GIPLGLSSVFGSVKSTQEADNVLILQNVVGENR------------CIDVKKNRFAGRLG 802
Query: 523 EAFLSYNRVT 532
++ V+
Sbjct: 803 RVTFLFDPVS 812
>gi|9634013|ref|NP_052087.1| DNA primase/helicase [Yersinia phage phiYeO3-12]
gi|6599004|emb|CAB63608.1| DNA primase/helicase [Yersinia phage phiYeO3-12]
Length = 566
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 109/463 (23%), Positives = 187/463 (40%), Gaps = 53/463 (11%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
+ + P +KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------YKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 267 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE--FEQ--GKAWLSN 380
G + L +E V + + ++ + K +++ ++ E+ F++ + + +
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSD---EVKKAIAEDGRFDEWYDELFGDD 388
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-----SQTETEY 435
TF L DS + LAK A +R G+ VI LDH V E +
Sbjct: 389 TFHLY----DSFAEAEADRLLAKLAYMRTGLGCDVI----VLDHISIVVSASEESDERKM 440
Query: 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIV 491
+ +++T +K FA+ + + H + G ++ D+ GS D I
Sbjct: 441 IDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIA 500
Query: 492 IHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
+ RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 501 LERNQQGDMPHL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>gi|9634014|ref|NP_052088.1| helicase [Yersinia phage phiYeO3-12]
gi|6599005|emb|CAB63609.1| helicase [Yersinia phage phiYeO3-12]
Length = 504
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 184/470 (39%), Gaps = 67/470 (14%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 51 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
+ + P +KDANE + A+ E V NA + G+ + D
Sbjct: 159 VLPAGKVRVAVLP-------YKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 211
Query: 267 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 212 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQALAWGKR 269
Query: 325 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 374
G + L +E V + + ++ +KK E G + E F
Sbjct: 270 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAE---DGRFDEWYDELFGDD 326
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-----S 429
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 327 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 372
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 484
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 373 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 431
Query: 485 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 432 LSDTIIALERNQQGDMPHL----VLVRLLKCRFTGDTGIAGYMEYNRETG 477
>gi|242037151|ref|XP_002465970.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
gi|241919824|gb|EER92968.1| hypothetical protein SORBIDRAFT_01g049170 [Sorghum bicolor]
Length = 156
Score = 66.2 bits (160), Expect = 4e-08, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 11/92 (11%)
Query: 183 QASRIILATDGDPPGQALAEEL---------ARRVGRERCWRVRWPKK-NDVDHFKDANE 232
+ASRIILATD D PGQAL+ EL G+ R ++ + + + F D +
Sbjct: 62 KASRIILATDNDGPGQALSGELLLNLVKKDVGESSGQRRMIQILVKTQMSSCNTFFDL-Q 120
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYF 264
VLM+LG AL++V+E+ ELYPI G F+ +D+F
Sbjct: 121 VLMFLGRQALRKVIEDGELYPIRGSFSLKDFF 152
>gi|37956767|gb|AAP34035.1| gene 4A [Enterobacteria phage T7]
Length = 566
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 120/500 (24%), Positives = 201/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVXSLGHGASAAKKTCVANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKXRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTCGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKRKIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
A + G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMCSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMEYNKETG 540
>gi|421487428|ref|ZP_15934859.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
gi|400194318|gb|EJO27423.1| hypothetical protein QWC_31919, partial [Achromobacter piechaudii
HLE]
Length = 238
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK--FWQEKD 109
+R + R ++ ET+ ++ ++ + FPY R G+ +N KYR + K QE
Sbjct: 12 VRDWLMSRGLTEETIAAFQIAEQERNGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGG 71
Query: 110 TEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
E +G I+ ++ + I EGE+D ++ + G + +SV GA
Sbjct: 72 AEPCLFGWQLIDPKTRTVAIFEGEIDAMTGHQMG-IPSLSVNAGA--------------- 115
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+Q+L N L++ S I L D D GQ A E+A R+G ERC V + D K
Sbjct: 116 GNHQWLDNDWERLQRFSEIYLCYDNDEAGQKGAREVANRLGLERCKVVLF------DKAK 169
Query: 229 DANEVLM 235
DAN+ ++
Sbjct: 170 DANDYML 176
>gi|37956769|gb|AAP34037.1| gene 4B [Enterobacteria phage T7]
Length = 503
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 112/467 (23%), Positives = 189/467 (40%), Gaps = 61/467 (13%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVXSLGHGASAAKKTCVANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKXRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTCGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQ--GKAW 377
G K L +E V E A L+ H + +++ S +R +E +F+Q + +
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKRKIIENGKFDQWFDELF 323
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT-----E 432
++TF L DS + LAK A + G+ VI LDH V E
Sbjct: 324 GNDTFHLY----DSFAEAETDRLLAKLAYMCSGLGCDVI----ILDHISIVVSASGESDE 375
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFINKCD 487
+ + ++T +K FA+ + + H + + H G P ++ D+ GS D
Sbjct: 376 RKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSGALRQLSD 434
Query: 488 NGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 435 TIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>gi|189427214|ref|YP_001949764.1| gp4A [Salmonella phage phiSG-JL2]
gi|189085867|gb|ACD75682.1| gp4A [Salmonella phage phiSG-JL2]
Length = 566
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 116/494 (23%), Positives = 196/494 (39%), Gaps = 50/494 (10%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 114
R IS ET ++ + K +A+ +NG +V+ K RD +K F +
Sbjct: 80 LTARGISKETCQKAGYWLAKVDNRMYQVAYYRDQNGSIVSQKVRDKDKNFKTTGSHKSDA 139
Query: 115 YGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
L + G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 140 LFLKHLWSGGKKIVVTEGEIDALTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 193
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 194 ------YFDQFEQIILMFDMDDAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 240
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-L 291
+ A+ E + NA + G+ + D + TS D G+ G + LN+
Sbjct: 241 HIMGEDKAILEQIWNANPWVPDGVVSALSLKDRVKEAM--TSEDAVGLLFDGCQGLNDRT 298
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIK 351
GE+ +VT GKS ++ + G + L +E V + + ++ + K
Sbjct: 299 LGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTIQDMMGLNNK 358
Query: 352 KPFFEAN--YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409
+++ AE +E+ + + +TF L DS + LAK A +R
Sbjct: 359 VRLRQSDEVKKAIAEDGRFDEWYD-ELFGDDTFHLY----DSFAEAEADRLLAKLAYMRT 413
Query: 410 GVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLH 464
G+ VI LDH V E + + +++T +K FA+ + + H +
Sbjct: 414 GLGCDVI----VLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPE 469
Query: 465 NWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
G ++ D+ GS D I + RN+ + + V VR ++ + G
Sbjct: 470 KGKPHEEGRAVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRLLKCRFTGD 525
Query: 521 IGEA-FLSYNRVTG 533
G A ++ YNR TG
Sbjct: 526 TGIAGYMEYNRETG 539
>gi|189427215|ref|YP_001949765.1| gp4B [Salmonella phage phiSG-JL2]
gi|189085868|gb|ACD75683.1| gp4B [Salmonella phage phiSG-JL2]
Length = 504
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 118/502 (23%), Positives = 193/502 (38%), Gaps = 66/502 (13%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF 114
R IS ET ++ + K +A+ +NG +V+ K RD +K F +
Sbjct: 18 LTARGISKETCQKAGYWLAKVDNRMYQVAYYRDQNGSIVSQKVRDKDKNFKTTGSHKSDA 77
Query: 115 YGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
L + G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 78 LFLKHLWSGGKKIVVTEGEIDALTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 131
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 132 ------YFDQFEQIILMFDMDDAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 178
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-L 291
+ A+ E + NA + G+ + D + TS D G+ G + LN+
Sbjct: 179 HIMGEDKAILEQIWNANPWVPDGVVSALSLKDRVKEAM--TSEDAVGLLFDGCQGLNDRT 236
Query: 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL----- 346
GE+ +VT GKS ++ + G + L +E V + + ++
Sbjct: 237 LGARGGEVVMVTSGSGMGKSTFVRQQALAWGKRMGKRVGLAMLEESVEDTIQDMMGLNNK 296
Query: 347 -----EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
+KK E G + E F L ++F+ E D L L
Sbjct: 297 VRLRQSDEVKKAIAE---DGRFDEWYDELFGDDTFHLYDSFA--EAEADRL--------L 343
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWF 456
AK A +R G+ VI LDH V E + + +++T +K FA+ +
Sbjct: 344 AKLAYMRTGLGCDVI----VLDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLVV 399
Query: 457 VAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512
+ H + G ++ D+ GS D I + RN+ + + V VR
Sbjct: 400 ICHLKNPEKGKPHEEGRAVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRL 455
Query: 513 VRNKVVGTIGEA-FLSYNRVTG 533
++ + G G A ++ YNR TG
Sbjct: 456 LKCRFTGDTGIAGYMEYNRETG 477
>gi|17570807|ref|NP_523316.1| helicase [Enterobacteria phage T3]
gi|15698|emb|CAA35136.1| 4B [Enterobacteria phage T3]
gi|17384291|emb|CAC86279.1| helicase [Enterobacteria phage T3]
Length = 504
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 113/470 (24%), Positives = 183/470 (38%), Gaps = 67/470 (14%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 51 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 211
Query: 267 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 212 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 269
Query: 325 AGWKFVLCSMENKVREHARKLL----------EKHIKKPFFEANYGGSAERMTVEEFEQG 374
G + L +E V + + ++ +KK E G + E F
Sbjct: 270 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAE---DGRFDEWYDELFGDD 326
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT--- 431
L ++F+ E D L LAK A +R G+ VI LDH V
Sbjct: 327 TFHLYDSFA--EAEADRL--------LAKLAYMRTGLGCDVI----VLDHISIVVSASEE 372
Query: 432 --ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSAHFIN 484
E + + +++T +K FA+ + + H + + H G ++ D+ GS
Sbjct: 373 SDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHE-EGRAVSITDLRGSGALRQ 431
Query: 485 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 432 LSDTIIALERNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 477
>gi|17570806|ref|NP_523315.1| DNA primase/helicase [Enterobacteria phage T3]
gi|130906|sp|P20315.1|PRIM_BPT3 RecName: Full=DNA primase/helicase
gi|15697|emb|CAA35135.1| 4A [Enterobacteria phage T3]
gi|17384290|emb|CAC86278.1| DNA primase/helicase [Enterobacteria phage T3]
Length = 566
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 184/461 (39%), Gaps = 49/461 (10%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 267 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSNTF 382
G + L +E V + + ++ + K +++ AE +E+ + + +TF
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAEDGRFDEWYD-ELFGDDTF 390
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVS 437
L DS + LAK A +R G+ VI LDH V E + +
Sbjct: 391 HLY----DSFAEAEADRLLAKLAYMRTGLGCDVI----VLDHISIVVSASEESDERKMID 442
Query: 438 QMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIH 493
+++T +K FA+ + + H + G ++ D+ GS D I +
Sbjct: 443 RLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALE 502
Query: 494 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 503 RNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>gi|403259693|ref|XP_003922337.1| PREDICTED: twinkle protein, mitochondrial [Saimiri boliviensis
boliviensis]
Length = 690
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 112/495 (22%), Positives = 194/495 (39%), Gaps = 71/495 (14%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKF 104
F I+ +TL+R V R +V FP++ G KL+ K R + +
Sbjct: 186 FGLTKITDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCRGDGVSYEETT 243
Query: 105 WQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 163
+ +GL I ++++++ E+D L++ ++ L +++P G S + +P
Sbjct: 244 IPQPSAYHNLFGLPLISRRDTEVVLTSRELDSLALSQSTGLPTLTLPQGT-SCLPPALLP 302
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 303 ----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQ 345
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
+ N L L ++ A + +FR +E+ S E
Sbjct: 346 PHPLEALNRGL------NLSRIIRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGL 396
Query: 284 GWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 397 RWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNV 455
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF---SLIRCENDSLPSIK 396
AR +L + AER +E ++ W +N F L I+
Sbjct: 456 RLARVMLTQF-------------AERRLEDELDKYDHW-ANRFEDLPLYFMTFHGQQGIR 501
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
V+D + AV + + +VID + +S ++ + ++FA + CHV
Sbjct: 502 TVVDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTL 561
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRN 515
V HPR+ + + I GSA + DN ++I ++R GP R +QV +N
Sbjct: 562 VIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KN 614
Query: 516 KVVGTIGEAFLSYNR 530
+ G +G L +N+
Sbjct: 615 RFDGDVGVFPLEFNK 629
>gi|301103400|ref|XP_002900786.1| twinkle protein, putative [Phytophthora infestans T30-4]
gi|262101541|gb|EEY59593.1| twinkle protein, putative [Phytophthora infestans T30-4]
Length = 666
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 125 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 184
++++ EGE D +++ +A + VS+P+G S+ +P L++
Sbjct: 240 ELVLTEGEFDAMAVHQATGMAAVSLPNGC-QSLPPSVLP----------------LLERF 282
Query: 185 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244
RI L D D GQ+ E+ A ++G RC+ VR P KDAN+ L L
Sbjct: 283 KRIYLWMDNDASGQSNVEKFAAKLGMARCYIVRMPANAASSSIKDANDALR--ADLDLTA 340
Query: 245 VVENAELYPIMGLFNF----RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV-LPGEL 299
+V AE+ P + F RD ++EI + G + S + +LN L GE+
Sbjct: 341 IVNAAEIMPHTQITTFEELRRDVYEEI-VNPLKACGVQ---SRAFPSLNRLMKGHRMGEV 396
Query: 300 TIVTGVPNSGKSEWIDALICNI 321
T++TG GK+ ++ L ++
Sbjct: 397 TVLTGPTGCGKTTFLSQLSLDL 418
>gi|145527666|ref|XP_001449633.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417221|emb|CAK82236.1| unnamed protein product [Paramecium tetraurelia]
Length = 992
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 100/478 (20%), Positives = 192/478 (40%), Gaps = 51/478 (10%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTE---- 111
AE+++S ET + R F Y +LV+CK R K + E
Sbjct: 247 LAEKVLSEETKQNIRSQLDNQFDN----FQY----ELVSCKIRAAGKDLKHIQKIEPMNA 298
Query: 112 -KVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDT 169
K +G+ ++ +S +I+ EGE D ++ + + +S+P G ++P+
Sbjct: 299 AKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNIPAISLPYGI------NHIPA----- 347
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKD 229
YL ++ + II+ D D PG+ ++++AR++G R V+ N D+ KD
Sbjct: 348 ---YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKIARKLGNARTRVVQPSLINPHDYPKD 404
Query: 230 ANEVLMYLGPGALKEVVENAELYP--IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
AN+ L + + + ++ L I +F+ + + G + T +
Sbjct: 405 ANDCLRFYADKVMTYIDQSKCLLKKNITQFTDFKQLTKNRILNFELSKGTQSQTFTTYN- 463
Query: 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
N + GE TI+TG SGK+ ++ L + + G + S E K A L
Sbjct: 464 -NTTKGLRTGEFTILTGPTGSGKTTFLSQLSLDFCKE-GITTLWGSFEIKTDRLAEHQLL 521
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL 407
+ K + + +++FE N + + ++D + A+
Sbjct: 522 QAYKTDLIKQ---KDLVDIAIQKFE-------NEIPIYYMNFYGSTDLDQIIDTIEYAIY 571
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV 467
+ V + +D + + + ++ +++ +R ++ H+ V HPR++
Sbjct: 572 EYNVTHVCLDNLQFMMGTQVGGNRKFDFQDEIIEKFRRLTSNNDIHLTLVIHPRKVDE-- 629
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
E + I GSA + DN +I +NR P RV + + VG +G F
Sbjct: 630 NEDLTIASIFGSAKATQEADNVFII-QNR-----PRYRVFEIKKNRYDGEVGRVGLGF 681
>gi|149926830|ref|ZP_01915089.1| replicative DNA helicase [Limnobacter sp. MED105]
gi|149824382|gb|EDM83600.1| replicative DNA helicase [Limnobacter sp. MED105]
Length = 461
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 119/282 (42%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D GISTG+ L+ + + PG+L IV G P+ GK+ A NI
Sbjct: 181 ERIDELYHRDSTSDITGISTGFVDLDGKTSGLQPGDLIIVAGRPSMGKT----AFSLNIG 236
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A +LL GS R+ G+
Sbjct: 237 EHVAVEEGHAVAVFSMEMGATQLAMRLL--------------GSVGRLDQHRLRTGRLTD 282
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRP 427
W T+++ + +N D P++ + A+ L G GLVI Y +L
Sbjct: 283 EDWPRLTYAVEKMQNAQLFIDETPALSSMEVRARCRRLARQCGQLGLVIIDYLQLMGSSS 342
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 343 PGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 402
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 403 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRVTFL 444
>gi|307243368|ref|ZP_07525528.1| putative replicative DNA helicase [Peptostreptococcus stomatis DSM
17678]
gi|306493260|gb|EFM65253.1| putative replicative DNA helicase [Peptostreptococcus stomatis DSM
17678]
Length = 461
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 39/295 (13%)
Query: 246 VENAELYPIMGLFNFRDYFDEI--DAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIV 302
+EN E+ I +F+ + D++ DA D G+ TG++ L+++ N L G LTI+
Sbjct: 132 IEN-EVKSISDIFSEKGTVDDLILDASEIDLIDDRDGLKTGFKNLDKVLNGLKFGTLTIL 190
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVR------EHARKLLE-KHIK 351
TG P+SGKS ++ +I N +G K + S E N +R + L E K +
Sbjct: 191 TGEPSSGKSTLLNQIIAE-NISSGNKAFIYSGELTGSNVLRWFIDTVANVNDLQEYKSMG 249
Query: 352 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV 411
++ AN G + ++E+ + + ++ N EN S PSI + + V
Sbjct: 250 GTYYSANNHG---QYAIKEWIKDRLFIFN-------ENKS-PSISNIGMTIEYLARVKNV 298
Query: 412 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG--- 468
+ +ID +D + E E ++ ++K A+ + V VAHPR+ + +
Sbjct: 299 KLFIIDNLMMIDRGQF---EEFEKQKELAKILKNLAKKYKISVILVAHPRKKQSNLSLKN 355
Query: 469 --EPPNLYDISGSAHFINKCDNGIVIHRN--RDPEAGPIDRVQVCVRKVRNKVVG 519
E +++D+SG++ +N D I+I R+ D D ++ V ++N++ G
Sbjct: 356 TKESYHMHDVSGASEVVNLADYEILISRDIGEDKNGNKYDTTKIIV--LKNRITG 408
>gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo]
gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis]
Length = 1613
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 110/431 (25%), Positives = 178/431 (41%), Gaps = 66/431 (15%)
Query: 118 DDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNC 177
++ G I+I EGE D + + + VS+P+G+ +S+ +P E ++ YLW
Sbjct: 383 ENASGPKSIVITEGEFDAMIVNQVTGRVAVSLPNGS-NSLPVALLPRLEH-LEHIYLW-- 438
Query: 178 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR----WPKKNDVDHF-KDANE 232
D D GQ E A ++G +R VR PK +D KDAN+
Sbjct: 439 -------------MDFDSAGQGGVEHFANKLGIQRTRVVRDIHERPKGSDSRGIPKDAND 485
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRD----YFDEIDAYYHRTSGDEFGI-STGWRA 287
V YL + +++A + NF D F+E+ G GI S
Sbjct: 486 V--YLRGLDISAYIDSATPMSHSQILNFNDIRQNVFEELS-----NPGATSGIASITMPG 538
Query: 288 LNELYNV-LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKL 345
L++L GEL++ TG SGK+ + L + G + S E N VR A+ +
Sbjct: 539 LSQLLKGHRRGELSVWTGATGSGKTTILSQLSLDYCMQ-GVSTLWGSFEINNVR-LAKTM 596
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKWVLDLA 402
L + + G ++E+F + ++ F+ L + SI V+D
Sbjct: 597 LRQ----------FSGRNLESSLEDFN----YYADKFAELPLRFMKFHGSTSIDQVIDAM 642
Query: 403 KAAVLRHGVRGLVIDPYNELDHQRPVSQTET-EYVSQMLTMVKRFAQHHACHVWFVAHPR 461
AV H VR ++ID + + E E ++ + +RFA HV V HPR
Sbjct: 643 DYAVYVHDVRHIIIDNLQFMLSGQNTRAGEVWEIQNKAIEKFRRFATQKNVHVSLVVHPR 702
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521
+ + G L + GS + DN ++I ++ E ID VRK N+ G +
Sbjct: 703 KEAD--GTALGLSSVFGSVKSTQEADN-VLILQSVLGENRSID-----VRK--NRFAGNL 752
Query: 522 GEAFLSYNRVT 532
G ++ V+
Sbjct: 753 GRVTFRFDPVS 763
>gi|348686575|gb|EGZ26390.1| hypothetical protein PHYSODRAFT_479432 [Phytophthora sojae]
Length = 673
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 28/203 (13%)
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
+++++ EGE D +++ +A + VS+P+G S+ +P L++
Sbjct: 238 NELVLTEGEFDAMAVHQATGMPAVSLPNGC-QSLPPSVLP----------------LLER 280
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243
RI L D D GQ+ E+ A ++G RC+ VR P KDAN+ L L
Sbjct: 281 FKRIYLWMDNDASGQSNVEKFASKLGMTRCYIVRLPANASSSPVKDANDALR--AGLDLT 338
Query: 244 EVVENAELYPIMGLFNF----RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV-LPGE 298
+V++AE P + F RD ++EI R G + S + +LN L GE
Sbjct: 339 AIVKSAERMPHSQITTFEELRRDVYEEI-VNPLRACGVQ---SRAFPSLNRLMKGHRMGE 394
Query: 299 LTIVTGVPNSGKSEWIDALICNI 321
+T++TG GK+ + L ++
Sbjct: 395 VTVLTGSTGCGKTTLLSQLSLDL 417
>gi|423635713|ref|ZP_17611366.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
gi|401276903|gb|EJR82848.1| hypothetical protein IK7_02122 [Bacillus cereus VD156]
Length = 338
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 91/204 (44%), Gaps = 34/204 (16%)
Query: 55 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKV 113
Y +R IS E R+ ++ R VVI + + NG+LVN KYR + K FW EKD + +
Sbjct: 137 YLGQRGISEEVQRQMKIGYDRFRQAVVIPW-FDTNGRLVNIKYRKISSKVFWYEKDGKPI 195
Query: 114 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
YGL + + +I + E E+D +S AG G + S N EQ
Sbjct: 196 GDLIYGLH-LAYKRNIKRAVYCEAEIDAMSFMTAGVF-------GLANGGSSFNQRKAEQ 247
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKKNDVDH 226
K +++ D DP G+ L +EL + + G+ R V
Sbjct: 248 ILK-----------SPIEELVIVADNDPAGEKLRKELEKYLNGKIRL------TNGYVRR 290
Query: 227 FKDANEVLMYLGPGALKEVVENAE 250
FKDANE L+ G +L VV+N E
Sbjct: 291 FKDANEALIKEGASSLISVVDNVE 314
>gi|47220632|emb|CAG06554.1| unnamed protein product [Tetraodon nigroviridis]
Length = 609
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 109/494 (22%), Positives = 192/494 (38%), Gaps = 86/494 (17%)
Query: 30 SKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 89
S + ++ ED ++L ++ F IS TL+R V + +V+ W
Sbjct: 127 SSSEAFTDLPEDEVQL------IKTMFQISKISNATLKRFGVRLFKPTKSLVLP---WFG 177
Query: 90 G--------KLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDK 135
G KL++ + D + E K +GL + ++++++ E+D
Sbjct: 178 GPESSLKGVKLISAQSADSGSITYNEATVPKSHSYYNLFGLHLVGRKDTEVVLTGHELDT 237
Query: 136 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
+++ +A L V++P G S + +P YL+Q R+ L GD
Sbjct: 238 MAVSQASGLPSVALPRGL-SCLPPILLP----------------YLEQFKRVTLWLGGDI 280
Query: 196 PGQALAEELARRVGRERCWRVRWPKK------NDVDHFKDANEVLMYLGPGALKEVVENA 249
++ +R++G RC VR P + + K+ ++ P A K +V
Sbjct: 281 RSWEASKIFSRKLGLRRCSLVR-PGEYRPCPLEALAAGKNLGHIIKSSIPAAHKSIVSFK 339
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGV 305
+L RD D Y + D+ W EL +L GELT+ TG
Sbjct: 340 QL---------RD-----DVYGELVNTDQVA-GVRWVRFPELTRILKGHRKGELTVFTGP 384
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFEANYGGSAE 364
SGK+ +I + ++ G + S E N VR L K + F + +
Sbjct: 385 TGSGKTTFISEVALDLCMQ-GVNTLWGSFEINNVR------LAKIMLTQF-------AVQ 430
Query: 365 RMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422
R+ E EQ W L +IK VLD + AV + + ++ID +
Sbjct: 431 RLE-ENLEQYDFWADKFEELPLYFMTFHGQQNIKTVLDTMQHAVYMYDINHVIIDNLQFM 489
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHF 482
Q +S + ++ ++FA +CHV + HPR+ + + I GSA
Sbjct: 490 MGQENLSVDKFAVQDHIIGAFRKFATSSSCHVTLIIHPRKEED--DRELQMASIFGSAKA 547
Query: 483 INKCDNGIVIHRNR 496
+ DN +++ +
Sbjct: 548 SQEADNVLILQEKK 561
>gi|301618744|ref|XP_002938766.1| PREDICTED: twinkle protein, mitochondrial-like [Xenopus (Silurana)
tropicalis]
Length = 677
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/426 (23%), Positives = 177/426 (41%), Gaps = 77/426 (18%)
Query: 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
E++++I GE+D L++ ++ + +++P GA S + +P YL+
Sbjct: 273 ETEVVITNGEVDCLAIHQSTGVTTLALPRGA-SCLPPVLLP----------------YLE 315
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 242
Q RIIL D ++ AR++ +RC +R P + N+ L +
Sbjct: 316 QFKRIILWLGDDLRSWEASKLFARKLNMKRCSLIR-PGDKQPSPLQALNDGL------NI 368
Query: 243 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----E 298
++++ + + +FR +E+ + + D+ W EL +L G E
Sbjct: 369 TKILKASLPASHKSIISFRQLREEV--FGQLENADQVA-GVKWARFPELNKLLKGHRKGE 425
Query: 299 LTIVTGVPNSGKSEWI-----DALICNINEHAGWKFVLCSME-NKVR-------EHARKL 345
LT+ TG SGK+ +I D I +N G S E N VR + A +
Sbjct: 426 LTVFTGPTGSGKTTFISEYALDLCIQGVNTLWG------SFEINNVRLAKIMLTQFALQR 479
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
LE+ + K Y A+R FE L F + + IK V+D + A
Sbjct: 480 LEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQN----IKSVIDTMQHA 520
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
V + + ++ID + Q + M+ ++FA + CHV V HPR+ +
Sbjct: 521 VYMYDITHVIIDNLQFMMGQENLYTDRFAAQDYMVGAFRKFATDNNCHVTVVIHPRKEDD 580
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEA 524
+ I GSA + DN ++I ++R GP R +QV +N+ G +G
Sbjct: 581 --DKELQTSSIFGSAKASQEADN-VLILQDRKLVTGPGKRHLQV----AKNRFDGDVGVF 633
Query: 525 FLSYNR 530
L +N+
Sbjct: 634 SLEFNK 639
>gi|194015768|ref|ZP_03054384.1| DNA primase [Bacillus pumilus ATCC 7061]
gi|194013172|gb|EDW22738.1| DNA primase [Bacillus pumilus ATCC 7061]
Length = 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 97/219 (44%), Gaps = 36/219 (16%)
Query: 54 AYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWR--NGKLVNCKYRDF-NKKFWQEKD- 109
AY R IS + R V G VI WR N +L N KYR NK FW K
Sbjct: 136 AYLTNRGISEDVQREAGVGL--IGKTAVIP---WRLPNKRLANVKYRSTRNKAFWYAKGG 190
Query: 110 --TEKVFYGLDDIEGE--SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 165
++ YG++ + + ++ E E+D LS AG+ C G+ S K ++ ++
Sbjct: 191 LPIRELIYGIETVYADRAKTAVLAEAEIDALSWRTAGY--CGIATGGSKFSAEKADIIAQ 248
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 225
+ +YL I+ TD D G+ L +E+ ++ +VR +
Sbjct: 249 ---SSIEYL-------------IVITDNDEAGKKLRKEVELKM----RGKVRLAHGYITE 288
Query: 226 HFKDANEVLMYLGPGALKEVVENAELYPIMGLF-NFRDY 263
+KDANE+LM G GALK VV AE I F N R +
Sbjct: 289 GYKDANELLMAKGEGALKRVVSRAEAVSINVRFGNIRTF 327
>gi|443726544|gb|ELU13663.1| hypothetical protein CAPTEDRAFT_220406 [Capitella teleta]
Length = 730
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 106/496 (21%), Positives = 199/496 (40%), Gaps = 76/496 (15%)
Query: 61 ISAETLR--RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKV----- 113
+S ETL R RV+ G+ +++ R+ +V K K QE +V
Sbjct: 265 LSMETLNTFRIRVINSDQGYSLLVPLYDLRDA-IVGMKIHTVTKFTVQEMQRNRVVSKII 323
Query: 114 -------FYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 165
+G ++ + +++ E D +++ + + +++P G+ + +S+K +P+
Sbjct: 324 PKLEFGSLFGWHLMKPKHKSVVLTASEWDAMAIYQVTGVPALALPRGS-AFLSQKVLPA- 381
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 225
L+Q S I L D D A+ L++++ RC V+ P +N
Sbjct: 382 ---------------LEQFSSITLWLDSDVKSWEAAKILSKKLNESRCSLVK-PAENQ-- 423
Query: 226 HFKDANEVLMYLGPG-ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 284
L L G + +++ A + +FR E+ + S +
Sbjct: 424 -----PSPLTALKEGYNISSILKAARPIKHQSITSFRSLRQEV---FSTLSESDVVAGVK 475
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVR 339
W+ L +L G ELT+ TG SGK+ +I ++ G + S E N V+
Sbjct: 476 WKRYPHLNKLLKGHRRGELTVFTGPTGSGKTTFISDYSLDLAMQ-GVNTLWGSFEINNVK 534
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
L K + F + N + + T + FE L F + D+ K
Sbjct: 535 ------LMKTMLTQFAQMNLVKNIDLFDETADAFES----LPLFFMTFHGQEDT----KK 580
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV---SQMLTMVKRFAQHHACHV 454
V++ AV H ++ +++D + ++ T+ ++++ +RFA H CHV
Sbjct: 581 VIETMSHAVYIHDIQHVIVDNLQFMMGSSSFHRSSTDRFLIQDEIISAFRRFATHMNCHV 640
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
V HPR+ + E ++ I GSA + DN +++ R +QV +
Sbjct: 641 TLVIHPRKEKD--SEDLSMSSIFGSAKATQEADNVLILQDKRLVSPRGKKYIQVA----K 694
Query: 515 NKVVGTIGEAFLSYNR 530
N+ G +G L Y++
Sbjct: 695 NRFDGELGVMLLKYDK 710
>gi|348531915|ref|XP_003453453.1| PREDICTED: twinkle protein, mitochondrial-like [Oreochromis
niloticus]
Length = 699
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 108/493 (21%), Positives = 199/493 (40%), Gaps = 94/493 (19%)
Query: 35 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW------- 87
+ ++ ED +L ++ F IS TL++ V + +V FP++
Sbjct: 170 LTDLPEDEAQL------IKTMFQITKISNATLKKFGVRLFKPTKSLV--FPWFGGPDSSL 221
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKV-----FYGLDDI-EGESDIIIVEGEMDKLSMEEA 141
+ KL++ + + +K + E K +GL + +S++++ E D +++ +A
Sbjct: 222 KGVKLLSAQRTETDKVTYNEATVPKSNSYYNLFGLPLVGRLDSEVVVTGHEFDTMAVSQA 281
Query: 142 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201
L V++P G S + +P YL+Q R+ L GD +
Sbjct: 282 TGLPSVALPRGV-SCLPPILLP----------------YLEQFKRVTLWLGGDIRSWEAS 324
Query: 202 EELARRVGRERCWRVRWPKK------NDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
+ +R++G RC VR P + + K+ + ++ P A K +V +L
Sbjct: 325 KSFSRKLGIRRCSLVR-PGEYRPCAVEALARGKNLSNIIKASIPAAHKSIVSFKQLRE-- 381
Query: 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKS 311
D Y + D+ W EL +L GELT+ TG SGK+
Sbjct: 382 ------------DVYGELVNTDQVA-GVKWTRFPELNRILKGHRKGELTVFTGPTGSGKT 428
Query: 312 EWIDALICNINEHAGWKFVLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSA 363
+I L ++ G + S E N VR + A + LE++++ F A
Sbjct: 429 TFISELALDLCMQ-GVNTLWGSFEINNVRLAKIMLTQFAMQRLEENLEHYDFWA------ 481
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
++FE+ L F + + IK VLD + AV + + +VID +
Sbjct: 482 -----DKFEE----LPLYFMTFHGQQN----IKTVLDTMQHAVYLYDINHVVIDNLQFMM 528
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
Q +S + ++ + ++FA + +CHV + HPR+ + I GSA
Sbjct: 529 GQENLSVDKFAVQDHIIGVFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKAS 586
Query: 484 NKCDNGIVIHRNR 496
+ DN +++ +
Sbjct: 587 QEADNVLILQEKK 599
>gi|351715591|gb|EHB18510.1| Twinkle protein, mitochondrial [Heterocephalus glaber]
Length = 959
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 115/496 (23%), Positives = 191/496 (38%), Gaps = 68/496 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG------KLVNCKYRDFNKKFWQ 106
R F ++ +TLRR RV R +V FP++ G KL+ + + +
Sbjct: 177 RVMFGLTKVTDDTLRRFRVQYLRPARSLV--FPWFSQGSGLRGLKLLGAEGHGDGVHYME 234
Query: 107 EKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161
Y GL I + ++++ E+D L++ +A L +++P G S+
Sbjct: 235 TTIPRPGAYHNLFGLPLISRRDVEVVLTSRELDSLALSQATGLPTLALPRGT-LSLPPAL 293
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK 221
+P YL+Q RIIL D A+ AR++ +RC VR P
Sbjct: 294 LP----------------YLEQFRRIILWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGD 336
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 281
+ N L L ++ A + +FR +E+ + E
Sbjct: 337 QQPRPLEALNRGL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELTDVEQAA 387
Query: 282 STGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 388 GIRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEIS 446
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSI 395
AR +L + G E E+ ++ W L SI
Sbjct: 447 NVRLARVMLTQFAV---------GQLE----EQLDKYDVWADRFEDLPLYVMTFHGQQSI 493
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
++V+D + AV + V +VID + +S ++ ++FA + CHV
Sbjct: 494 RFVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATENNCHVT 553
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVR 514
V HPR+ + + I GSA + DN I+I ++R GP R +QV +
Sbjct: 554 LVIHPRKEDD--DKELQTASIFGSAKASQEADN-ILILQDRKLVTGPGKRYLQVS----K 606
Query: 515 NKVVGTIGEAFLSYNR 530
N+ G +G L +N+
Sbjct: 607 NRFDGDVGVFPLEFNK 622
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 97/237 (40%), Gaps = 24/237 (10%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 683 GELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF------- 734
Query: 357 ANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 414
+ R+ E+ ++ W L SI+ V+D + AV + V +
Sbjct: 735 -----AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRSVIDTMQHAVYVYDVCHV 788
Query: 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 474
VID + +S ++ ++FA + CHV V HPR+ + +
Sbjct: 789 VIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATENNCHVTLVIHPRKEDD--DKELQTA 846
Query: 475 DISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
I GSA + DN I+I ++R GP R +QV +N+ G +G L +N+
Sbjct: 847 SIFGSAKASQEADN-ILILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 898
>gi|338826825|ref|YP_004678739.1| DNA primase/helicase [Enterobacteria phage K30]
gi|335335288|gb|AEH41032.1| DNA primase/helicase [Enterobacteria phage K30]
Length = 576
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 183/486 (37%), Gaps = 97/486 (19%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 122 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 181
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 182 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDEPGRAAVEEAA- 228
Query: 207 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 258
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 229 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 277
Query: 259 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 316
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 278 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 332
Query: 317 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 356
G K + +E V RE +KL+E +F+
Sbjct: 333 QALGFARGQGLKVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDKWFD 392
Query: 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 393 ELYG-------TDQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 430
Query: 417 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 467
LDH V E + + +++T +K FA+ + + H +
Sbjct: 431 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 486
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 487 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 544
Query: 528 YNRVTG 533
YN TG
Sbjct: 545 YNEKTG 550
>gi|340507023|gb|EGR33048.1| hypothetical protein IMG5_063030 [Ichthyophthirius multifiliis]
Length = 422
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 89/412 (21%), Positives = 176/412 (42%), Gaps = 64/412 (15%)
Query: 93 VNCKYRDF---NKKFWQEKDTEKV--FYGLDDIE-GESDIIIVEGEMDKLSMEEAGFLNC 146
V CK R NK+F + K + + +GL+ + +I+I EGE D +++ + +
Sbjct: 15 VKCKIRGVGKENKQFMRMKPSGQSSGLFGLNTVPINAKEIVITEGEYDAMAVFQETGIPS 74
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
+S+P+GA N+P + + NC L+Q +I L D D GQ ++A
Sbjct: 75 ISLPNGAC------NLPCQ--------VINC---LEQFEKIYLWMDNDQAGQNNYPKIAE 117
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
++G R + V KDAN+VL P + + ++ A + F D ++
Sbjct: 118 KLGLNRSFIVLTKNGE-----KDANDVLRK-NPHKMIQYIKEARTIHDKNILKFEDIKEQ 171
Query: 267 IDAYYHRTSGDEFGISTGWRALN-ELYN-----VLPGELTIVTGVPNSGKSEWIDAL--- 317
+ Y+R +F ++ G + + + YN + GE+T++TG SGK+ ++ L
Sbjct: 172 V---YNRIF--KFDLNQGVKCSSFQFYNEKIKGLRKGEMTVLTGPTGSGKTTFLSQLSLD 226
Query: 318 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV--EEFEQGK 375
C+ W S E K A ++ ++ + F+ S E+ E+F+
Sbjct: 227 FCSKQVPTLWG----SFEIKNEILATNMVLQYSNENLFK-----SPEKFIYWSEQFQNIP 277
Query: 376 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
+ + F N +L+ + ++ + ++ ++ID L + + +
Sbjct: 278 MYFMSFFGSTNINN--------ILETIEYSIYAYNIQHVIIDNLQFLLGTQGKGFDKFDL 329
Query: 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487
+ + ++ A H+ V HP+++ + E N+ + GSA + D
Sbjct: 330 QDKAIENFRKLATEKNIHLTLVIHPKKVDDR--EDLNISSVFGSAKATQEAD 379
>gi|345893813|ref|ZP_08844605.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
gi|345045849|gb|EGW49748.1| hypothetical protein HMPREF1022_03265 [Desulfovibrio sp.
6_1_46AFAA]
Length = 563
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 114/511 (22%), Positives = 203/511 (39%), Gaps = 65/511 (12%)
Query: 47 PLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ 106
PL ++A L + + G +A Y + G+L R K F
Sbjct: 71 PLETSIKALKVRGLTAETCAHFGYGIGNHRGKPCHVAPLYDKEGRLCAQHLRLEGKDFKW 130
Query: 107 EKDTEKV-FYGLDDIEGESD-IIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNV 162
DTE V +G + +++ EGE+D +S+ + VS+P+GA S+V
Sbjct: 131 LGDTEAVGLFGWNVWRNSGRRVVVTEGEIDCMSVSQLQGNKWPVVSLPNGAQSAV----- 185
Query: 163 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 222
+++ +L+ ++LA D D PGQA A E A +C R P
Sbjct: 186 ---------KFIRRALEWLEGFDEVVLAFDMDEPGQAAARECALLFSPGKCKIARLPD-- 234
Query: 223 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 282
KDAN L+ L + + A Y G+ + D +D++ + G
Sbjct: 235 -----KDANACLLAGKGKELLDSLWGAVPYRPDGIRSGADLWDDL------LKPPQPGYD 283
Query: 283 TGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341
+ LN +L + EL + T GKS ++ + ++ + ++E +
Sbjct: 284 IPYPGLNAKLRGLRLRELYLFTAGSGIGKSTLVNEIAYHLKMVHHLPLGVMALEESPARN 343
Query: 342 ARKLLEKHIKKPFF--EANYG-GSAERMTVEEFEQGKA-WLSNTFSLIRCENDSLPSIKW 397
AR+ L H+ KP EA+ A+ + E GK W+ + F I
Sbjct: 344 ARRYLGIHLNKPLHLPEAHAAVPEADLKSAFEAVMGKDWWIYDHF--------GSSDIDT 395
Query: 398 VLDLAKAAVLRHGVRGLVID----PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
+L + + G + LV+D + LD ++E + + +++T +++ +
Sbjct: 396 LLAKIRYMAVGLGCKVLVLDHISIVVSGLDES--AGESERKVIDKLMTKLRQLVEETNVM 453
Query: 454 VWFVAH---PRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRV 506
+ V H P + ++ G +L D+ GS D I + R++ DP A
Sbjct: 454 LLAVVHLKRPDKGKSYNEGRQVSLTDMRGSGGLEQMSDAVISLERDQQGDDPNA------ 507
Query: 507 QVCVRKVRNKVVGTIGEA-FLSYNRVTGEYM 536
VR ++N+ +G GEA ++ Y TG +
Sbjct: 508 -ALVRVLKNRPIGDCGEAGYVRYVPETGRLL 537
>gi|281416294|ref|YP_003347534.1| DNA primase/helicase [Klebsiella phage KP32]
gi|262410413|gb|ACY66678.1| DNA primase/helicase [Klebsiella phage KP32]
Length = 582
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 117/486 (24%), Positives = 183/486 (37%), Gaps = 97/486 (19%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 129 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 188
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 189 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 235
Query: 207 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 258
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 236 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 284
Query: 259 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 316
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 285 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 339
Query: 317 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 356
G K + +E V RE +KL+E +F+
Sbjct: 340 QALGFARGQGLKVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGAYDKWFD 399
Query: 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 400 ELYG-------TDQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 437
Query: 417 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 467
LDH V E + + +++T +K FA+ + + H +
Sbjct: 438 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 493
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 494 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 551
Query: 528 YNRVTG 533
YN TG
Sbjct: 552 YNERTG 557
>gi|145497867|ref|XP_001434922.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402050|emb|CAK67525.1| unnamed protein product [Paramecium tetraurelia]
Length = 990
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 94/449 (20%), Positives = 183/449 (40%), Gaps = 51/449 (11%)
Query: 91 KLVNCKYRDFNKKFWQEKDTE-----KVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFL 144
+LV+CK R K + E K +G+ ++ +S +I+ EGE D ++ + +
Sbjct: 272 ELVSCKIRAAGKDLKHIQKIEPMNAAKGIFGMHLLKQDSTQVILTEGEFDAMAAYQMTNI 331
Query: 145 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 204
+S+P G ++P+ YL ++ + II+ D D PG+ ++++
Sbjct: 332 PAISLPYGI------NHIPA--------YLIEWLDQFEKLNDIIIWVDDDNPGRINSQKI 377
Query: 205 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 264
AR++G R V+ + D+ KDAN+ L + P + ++ ++ + F D+
Sbjct: 378 ARKLGNARTRVVQPSLLDPHDYPKDANDCLRFY-PDKVMTYIDQSKCLLKKNITQFTDF- 435
Query: 265 DEIDAYYHRTSGDEFGISTGWRAL------NELYNVLPGELTIVTGVPNSGKSEWIDALI 318
+ F +S G ++ N + GE TI+TG SGK+ ++ L
Sbjct: 436 ----KQLTKNRILNFELSKGTQSQTFTTYNNTTKGLRTGEFTILTGPTGSGKTTFLSQLS 491
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
+ + G + S E K A L + K + + V++FE
Sbjct: 492 LDFCKE-GITTLWGSFEIKTDRLAEHQLLQAYKTDLIKQ---KDLIDVAVQKFE------ 541
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
N + + ++D + A+ + V + +D + + + ++ +
Sbjct: 542 -NEMPIYYMNFYGSTDLDQIIDTIEYAIYEYNVTHVCLDNLQFMMGTQVGGNRKFDFQDE 600
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 498
++ +R ++ H+ V HPR++ E + I GSA + DN +I +NR
Sbjct: 601 IIEKFRRLTSNNDIHLTLVIHPRKVDE--NEDLTIASIFGSAKATQEADNVFII-QNR-- 655
Query: 499 EAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
P RV + + VG +G F S
Sbjct: 656 ---PRYRVFEIKKNRYDGEVGRVGLGFDS 681
>gi|312965232|ref|ZP_07779468.1| gp61 [Escherichia coli 2362-75]
gi|419017225|ref|ZP_13564549.1| DNA replication protein [Escherichia coli DEC1E]
gi|312290116|gb|EFR18000.1| gp61 [Escherichia coli 2362-75]
gi|377866340|gb|EHU31113.1| DNA replication protein [Escherichia coli DEC1E]
Length = 409
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 135/332 (40%), Gaps = 38/332 (11%)
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGP 239
L + I ++ D D G+ A E+A R+G RC V P +KD NE LM +
Sbjct: 33 LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTE 85
Query: 240 GALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE 298
+ + + A + L++ R+++ D I+A+Y + ++ + W +L + + E
Sbjct: 86 DEIWQYIGTASYFDPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAE 142
Query: 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFF 355
LT+V GV GK+E + + G K + S+E K ++L + P
Sbjct: 143 LTLVNGVNGHGKTEVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVL 201
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
E + + +F + W+ + + ++++ A R+G++ +
Sbjct: 202 EID--------SAFKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFI 245
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYD 475
ID + + +V + F HV V H R+ + +P D
Sbjct: 246 IDSLMKCGIGDDDYNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMD 300
Query: 476 ISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
+ GS + DN +I RN+ E + RVQ
Sbjct: 301 VKGSGAITDLTDNLFIIWRNKARERA-LQRVQ 331
>gi|315518940|dbj|BAJ51817.1| DNA primase/helicase-like protein [Ralstonia phage RSB2]
Length = 562
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 112/497 (22%), Positives = 195/497 (39%), Gaps = 58/497 (11%)
Query: 59 RLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYG 116
R +S ET R+ + K G V +A G L+ K R+ +K+F K + +G
Sbjct: 83 RGLSEETCRKFGYWVGKVKGELVQVADYRDTTGALLGQKLRNKDKEFSCLGKVSRDHLWG 142
Query: 117 LDDIEGESD-IIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+ G+ I+I EGE+D +S+ + VS+P GA ++ E
Sbjct: 143 SNLWSGKGKMIVITEGEIDAMSVSQLQGNKWPVVSLPTGAKAAAKTLAANYE-------- 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
YL +I+L D D PGQ +E + + + + P KDAN
Sbjct: 195 ------YLDGYDKIVLMFDNDEPGQQAVQESCEVLPAGKVFIAKLP-------LKDANAC 241
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-Y 292
L+ A+ + + NA Y G+ RD D I G +F + LN++
Sbjct: 242 LIDGQGAAVMDAIWNASPYRPDGVVAARDLIDRI-KQRAVVKGIDFPMGV---VLNQMTL 297
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
V GE+ ++T GKS + G++ + +E V E + H+ K
Sbjct: 298 GVREGEVVMLTSGSGMGKSSFARECAYGWGRSMGYRIGMAFIEESVEETCLDIAGLHLNK 357
Query: 353 PFFEANYGGSAERMTVEE------FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
+ A +TV + FE L + F DSL L+ + V
Sbjct: 358 RIRQYP---DAVSVTVRDEALHDLFENDSYHLYDHFG--SAGEDSL------LNKLRFMV 406
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-----PR 461
G + +++D + + ++ E + + +++T +K A+ ++H +
Sbjct: 407 TVLGCQFIILDHLSIVVSGMDEAEDERKTIDRLMTKLKTLAKTTGGRFVVISHLKRKDSK 466
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521
+ G +L ++ GS D I R++ E D V +R ++ + G
Sbjct: 467 STSHEEGGQISLSELRGSGAIAQLSDTVIGFERDQQGE----DPNLVTIRILKCRFTGDT 522
Query: 522 GEA-FLSYNRVTGEYMD 537
G A FL +N+ TG +D
Sbjct: 523 GVAGFLRFNKETGRLVD 539
>gi|317058121|ref|ZP_07922606.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
gi|313683797|gb|EFS20632.1| hypothetical protein FSBG_00129 [Fusobacterium sp. 3_1_5R]
Length = 304
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 46 EPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFW 105
+ E+ Y A R IS ETL +++ R+G G + KYR +KK
Sbjct: 88 QDFTQEMLDYMAGRGISKETLINSKIFN-RNGRFCFFYVGEDEAGTCIGVKYRTIDKKIS 146
Query: 106 QEKDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPS 164
K + + +S ++ IVEGE+D LS+ E G N VSVP+GA S
Sbjct: 147 AAKGSVMNLLNWRLVPKDSKELYIVEGEVDLLSLLEIGIKNVVSVPNGAGS--------- 197
Query: 165 EEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV 224
Y Y W L++ +IIL D D G+ + + R+ KK ++
Sbjct: 198 -HDWIDYHYEW-----LEKFKKIILIMDNDEAGKKGIKAIYDRLKHSEI----EIKKINL 247
Query: 225 DHFKDANEVLM-YLGPGALKEVVENAE 250
+KD NE+LM G LK+++E E
Sbjct: 248 LFYKDPNEILMDESGRMKLKKILETGE 274
>gi|24962647|ref|NP_722491.2| twinkle protein, mitochondrial [Mus musculus]
gi|78099072|sp|Q8CIW5.1|PEO1_MOUSE RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein
homolog; AltName: Full=T7 gp4-like protein with
intramitochondrial nucleoid localization; AltName:
Full=T7-like mitochondrial DNA helicase; Flags:
Precursor
gi|24473770|gb|AAL27647.1| Twinkle [Mus musculus]
gi|48734593|gb|AAH71195.1| Progressive external ophthalmoplegia 1 (human) [Mus musculus]
gi|74226718|dbj|BAE27008.1| unnamed protein product [Mus musculus]
gi|148709998|gb|EDL41944.1| progressive external ophthalmoplegia 1 (human) [Mus musculus]
Length = 685
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFSVRYLRSARSLV--FPWFTPGSSGLRGLKLLGAEGQENGVQYV 235
Query: 106 QEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQA 388
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 513
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 514 RNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>gi|320158401|ref|YP_004190779.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
gi|319933713|gb|ADV88576.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
Length = 552
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 104/436 (23%), Positives = 176/436 (40%), Gaps = 63/436 (14%)
Query: 44 ELEPLGNELRAYFAERLISAETLRR--NRVMQKRHGHEVVIAFPY-----WRNGKLVNCK 96
+ +PL E RA +R +S ET +R RV + H + + +GKLV K
Sbjct: 62 DFKPLRGEFRA-LPKRGLSEETAKRFSYRVGEAWHPENKRLEMAHICDVKTEDGKLVAQK 120
Query: 97 YRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEE--AGFLNCVSVPDGA 153
R +K F K G+ G +++ EGE+D LS+ + VS+P+G
Sbjct: 121 CRFADKAFSVNGKIPKGTLIGMHLFSGGRRLVVSEGEVDMLSVSQMQGNKYPVVSLPNGV 180
Query: 154 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 213
S+ S +L C YLK+ ++LA D D GQ A++ A +
Sbjct: 181 QSAKS--------------HLLACIDYLKKFDEVVLAFDMDDVGQDSAQKAAEALA--GV 224
Query: 214 WRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 273
V+ K KDAN++L + + + NAE+Y GL + D + +
Sbjct: 225 VNVKIAKYE----LKDANDMLRAGKTSEMVQALWNAEVYTPDGLLDVDDVLESL-----F 275
Query: 274 TSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKS----EWIDALICNINEHAGWK 328
DE G+ +N+ N GE+ + GK+ E D + + + G
Sbjct: 276 EGDDESGLPWKHEGMNKTSNGRFYGEVHTLGAGTGLGKTTLLLEQADYDVTVLKQKVG-- 333
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGG----SAERMTVEEFEQGKAWLSNTFSL 384
L +EN +E R + KH + + N A R T + + +G ++ + + L
Sbjct: 334 --LFMVENDPKEVLRSICGKHDGRLYHVRNTDDYMMQDAIRQTAQLY-RGNLYIYDNWGL 390
Query: 385 IRCENDSLPS-IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
CE DS+ + I +++ L G R +D L + E + +++ +
Sbjct: 391 --CEWDSIKAKIVYLVSL--------GFRVFYVDHLTAL--ATGSDKDEKAEIERIMADI 438
Query: 444 KRFAQHHACHVWFVAH 459
AQ H + V+H
Sbjct: 439 ASLAQRHQILIHLVSH 454
>gi|194100433|ref|YP_002003806.1| gp4A [Klebsiella phage K11]
gi|193201372|gb|ACF15850.1| gp4A [Klebsiella phage K11]
Length = 576
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 179/486 (36%), Gaps = 97/486 (19%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 122 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 181
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 182 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 228
Query: 207 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 258
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 229 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 277
Query: 259 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 316
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 278 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 332
Query: 317 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 356
G + + +E V RE +KL+E +F+
Sbjct: 333 QALGFARGQGLRVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDEWFD 392
Query: 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416
YG S+ F L DS + LAK +R G+ VI
Sbjct: 393 ELYG------------------SDQFHLY----DSFAEAEVDRLLAKLHYMRTGLNCDVI 430
Query: 417 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 467
LDH V E + + +++T +K FA+ + + H +
Sbjct: 431 I----LDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 486
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 487 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 544
Query: 528 YNRVTG 533
YN TG
Sbjct: 545 YNEKTG 550
>gi|383397786|gb|AFH22563.1| hypothetical protein OSG_eHP30_00030 [Environmental Halophage
eHP-30]
Length = 616
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 282 STGWRALNELYNVLPGELTIVTGVPNSGKS-EWIDALICNINEHAGWKFVLCSMENKVRE 340
STG+ ++++LY V PG T + G SGKS W+D + N++ G K + S E +
Sbjct: 318 STGYPSVDQLYKVFPGYFTTIYGSSFSGKSLLWLD-FLKNMSYRHGLKHCIFSPETGAYD 376
Query: 341 HAR-KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
KL E +K F++ RM+ EE + K ++ F ++ SL ++ L
Sbjct: 377 DVFIKLCEMVAEKDFYDT----YNNRMSEEELRRAKEFVDKHFIVVDPGEHSL-DLETAL 431
Query: 400 DLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQT---ETEYVSQMLTMVKRFAQHHACHV 454
+ + + V+ L +DP+N+LDH P+ + E +Y+ + + V+ A + H+
Sbjct: 432 EYLQIIERYYSVKVNTLTLDPWNDLDH--PIDEADGREDKYLEKAIKKVRLSAYLNDWHI 489
Query: 455 WFVAHPR 461
+ H R
Sbjct: 490 CIITHAR 496
>gi|194100434|ref|YP_002003807.1| gp4B [Klebsiella phage K11]
gi|193201373|gb|ACF15851.1| gp4B [Klebsiella phage K11]
Length = 508
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 116/486 (23%), Positives = 183/486 (37%), Gaps = 97/486 (19%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTE-KVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD K F + +G G I+I EGE+D L++ +
Sbjct: 54 QNGSIVSQKLRDKEKNFSTRGSHKGDALFGKHLWNGGKKIVITEGEIDMLTVMQLQDCKW 113
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y +IIL D D PG+A EE A
Sbjct: 114 PVVSLGHGASAAKKTCSANYE------------YFDSFDQIILMFDMDDPGRAAVEEAA- 160
Query: 207 RVGRERCWRVRWPKKNDVDHF--KDANEVLMYLGPGALKEVVEN----AELYP--IMGLF 258
+V P K V KDANE L+ G KEV++ A P ++G
Sbjct: 161 --------QVLPPGKVHVAVLTEKDANECLL---KGKGKEVLDQIWNAAPWVPDGVIGAM 209
Query: 259 NFRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 316
+ +D E TS G + +G LN+ GE+ +VT GKS ++
Sbjct: 210 SMKDRVREA-----MTSEQSVGYLFSGCPGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQ 264
Query: 317 LICNINEHAGWKFVLCSMENKV--------------------REHARKLLEKHIKKPFFE 356
G + + +E V RE +KL+E +F+
Sbjct: 265 QALGFARGQGLRVGMAMLEESVEETMEDVLGIANGIRLRQQPREFKQKLIEDGTYDEWFD 324
Query: 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416
YG ++F L ++F+ E D L LAK +R G+ VI
Sbjct: 325 ELYGS-------DQFH-----LYDSFA--EAEVDRL--------LAKLHYMRTGLNCDVI 362
Query: 417 DPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV---- 467
LDH V E + + +++T +K FA+ + + H +
Sbjct: 363 ----ILDHISIVVSASEESDERKMIDRLMTKLKGFAKSTGVVLIVICHLKNPEKGKAHEE 418
Query: 468 GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
G ++ D+ GS D I + RN+ + + V + + K R +G ++
Sbjct: 419 GRAVSITDLRGSGSLRQLSDTIIALERNQQGDMPNL--VLLRILKCRFNGIGVGIAGYME 476
Query: 528 YNRVTG 533
YN TG
Sbjct: 477 YNEKTG 482
>gi|414090100|ref|YP_006990218.1| primase/helicase protein [Stenotrophomonas phage IME15]
gi|409995522|gb|AFV51455.1| primase/helicase protein [Stenotrophomonas phage IME15]
Length = 503
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 113/475 (23%), Positives = 186/475 (39%), Gaps = 77/475 (16%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +++ K RD +K F + +G G I++ EGE+D L++ E +C
Sbjct: 50 QNGSIISQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVME--LQDC 107
Query: 147 ----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202
VS+ GA ++ E Y Q +IIL D D G+ E
Sbjct: 108 KYPVVSLGHGAAAAKKTCAANYE--------------YFDQFEQIILMFDMDEAGRKAVE 153
Query: 203 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFN 259
E A+ + + P KDANE + + E + NA + ++ +
Sbjct: 154 EAAQVLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQIWNAGPWIPDGVVSALS 206
Query: 260 FRDYFDEIDAYYHRTSGDEFG-ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDAL 317
R+ E H S D G + +G LN+ GE+ +VT GKS ++
Sbjct: 207 LRERIRE-----HLGSEDAVGMLFSGCSGLNDRTLGARGGEVIMVTSGSGMGKSTFVRQQ 261
Query: 318 ICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ G + L +E V E A L L H++ ++ + E G+
Sbjct: 262 ALMWGKAMGKRVGLAMLEESVEETAEDLIGLNNHVRLR--------QSDDLKNAIIEDGR 313
Query: 376 --AWL-----SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
W ++TF L DS + LAK A +R G+ VI LDH V
Sbjct: 314 FDKWFDELFGNDTFHLY----DSFAEAEADRLLAKLAYMRTGLACDVI----VLDHISIV 365
Query: 429 SQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGS 479
E + + +++T +K FA+ + + H + G P ++ D+ GS
Sbjct: 366 VSASEESDERKMIDRLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRPVSITDLRGS 425
Query: 480 AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ +A + V VR ++ + G G A ++ YN+ TG
Sbjct: 426 GALRQLSDTIIALERNQQGDAPNL----VLVRVLKCRFTGDTGIAGYMEYNKKTG 476
>gi|451989254|gb|AGF91724.1| DNA primase/helicase [Synechococcus phage S-CBP4]
Length = 533
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 109/470 (23%), Positives = 190/470 (40%), Gaps = 58/470 (12%)
Query: 81 VIAFPYW-RNGKLVNCKYRDFNKKFWQEKDTEKVFYG--LDDIEGESDIIIVEGEMDKLS 137
V+ F Y+ +G L+ CK + +K F E +G L G+ ++I EGE+D S
Sbjct: 91 VLRFHYYDESGILIGCKTKTKDKDFRYEGQPATCLFGQHLFPATGKR-VVITEGELDAAS 149
Query: 138 MEEA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
EA G+ VS+P G S+ +KK++ + W L+ I+L D D
Sbjct: 150 CSEAMPGW-PMVSIPSG--SAAAKKSI-------QRAIPW-----LQGYEEIVLFFDNDE 194
Query: 196 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
G+ EE A + +C +KDA++ L A++E + NA+ Y
Sbjct: 195 AGRKATEEAASVLPPGKCKIASLQGD-----YKDASDALSTNDSQAIREAIWNAKPYRPD 249
Query: 256 GLFNFRDYFDEIDAYYHRTSGD-EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWI 314
G+ + + + + ++ D F G +A +L+ + GEL +T GKS +
Sbjct: 250 GIVDGKSLLELVTTPSPPSNHDYPF---QGLQA--KLHGIRYGELVTITAGSGIGKSSFC 304
Query: 315 DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374
L ++ G + ++E R A L+ + K + G +R ++ E Q
Sbjct: 305 RELATDL-LRKGERVGYLALEESNRRTALGLMSAAVGKSL----HIGEHDRSSLTEAYQA 359
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH----QRPVSQ 430
N F D S L + L G+ VI LDH +
Sbjct: 360 TLANWNLFLF-----DGFGSFDPDLIYNRIEYLAAGLDTRVI----FLDHLSILLSGLDG 410
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL----HNWVGEPPNLYDISGSAHFINKC 486
E + +T ++ + ++ V+H R+ ++ G L + GSA
Sbjct: 411 DERRMIDTTMTRLRSLVERTGIAMFLVSHLRRTTQDKNHEEGARVTLGQLRGSAAIAQLS 470
Query: 487 DNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNRVTGEY 535
D+ I + R++ + D VR ++N+ G +G A LSY+ T ++
Sbjct: 471 DSVIALERDQQSASKQSD---TTVRVLKNRYSGEVGVACRLSYDLTTCKF 517
>gi|449019985|dbj|BAM83387.1| mitochondrial DNA helicase Twinkle [Cyanidioschyzon merolae strain
10D]
Length = 822
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/388 (23%), Positives = 152/388 (39%), Gaps = 44/388 (11%)
Query: 114 FYGLDDIEGESD-IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+G+ + +++ +++ EGE D +++ ++ L+ VS+P+GA +++P
Sbjct: 425 LFGMHLVPADAECLVVTEGEFDAMAVHQSTGLSAVSLPNGA------RSLPPA------- 471
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
+L++ RI L D D PG A + A ++G +RC+ V + KDANE
Sbjct: 472 ----LLTWLERFKRIYLWLDDDIPGHDGARQFAHKLGLQRCFLV---GSGNGSGPKDANE 524
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L L ++E A P + F D ++ S LN L
Sbjct: 525 AL--LQQRDLFAMIERARPVPHERIVTFADLRADVQRELANPVQVRGLQSQTLPGLNRLL 582
Query: 293 NV-LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHI 350
GELTI +G GK+ + L + G + S E N VR + K +
Sbjct: 583 KGHRRGELTIFSGPTGVGKTTVLSQLSLDYCMQ-GANTLWGSFELNNVR------MAKVM 635
Query: 351 KKPFFEANYGGSAERM--TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
F ER ++FEQ + F +D + V+ + A
Sbjct: 636 LSQFAGIGLDAMGERFDQVADQFEQLPLYFLRFFG----SSD----VDQVIHAMEYAAYV 687
Query: 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVG 468
+ V +V+D + + E + + + + FA H HV V HPR+
Sbjct: 688 YDVAHVVLDNLQFMTSGQGRGYERFEIMDRAIEKFRAFATEHNVHVSVVIHPRKEDE--D 745
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNR 496
+ + GSA + DN I+I R
Sbjct: 746 QLLKTASVFGSAKATQEADNVIIIQNGR 773
>gi|317419622|emb|CBN81659.1| Twinkle protein, mitochondrial [Dicentrarchus labrax]
Length = 721
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 101/475 (21%), Positives = 190/475 (40%), Gaps = 86/475 (18%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKF 104
++ F IS TL++ V + +V FP++ + K+++ + D K
Sbjct: 207 IKTMFQITKISDATLKKFGVRVFKPTKSLV--FPWFGGPDSTLKGMKILSAQSTDTEKVT 264
Query: 105 WQEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 158
+ E K +GL + +S++++ E+D L++ +A L V++P G S +
Sbjct: 265 YNEATLPKYNSYYNLFGLPLVGSIDSEVVLTGHELDTLAVSQATGLPSVALPRGV-SCLP 323
Query: 159 KKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRW 218
+P YL+Q R+ L GD ++ +R++G RC VR
Sbjct: 324 PILLP----------------YLEQFKRVTLWLGGDIRSWEASKIFSRKLGLRRCSLVRP 367
Query: 219 PKKND-----VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHR 273
+ + K+ ++ P A K +V +L D Y
Sbjct: 368 GEARPCPVEALAQGKNFVPIIKSSIPAAHKSIVSFKQLRE--------------DVYGEL 413
Query: 274 TSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF 329
+ D+ W+ EL +L GELT+ TG SGK+ I + ++ G
Sbjct: 414 VNTDQVA-GVKWKRFQELTRILKGHRKGELTVFTGPTGSGKTTLISEVALDLCMQ-GVNT 471
Query: 330 VLCSME-NKVR-------EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
+ S E N VR + A + LE+++++ F A+ +FE+ L
Sbjct: 472 LWGSFEINNVRLAKIMLTQFAMQRLEENLEQYDFWAD-----------KFEE----LPLY 516
Query: 382 FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441
F + + +K VLD + AV + + ++ID + Q ++ + ++
Sbjct: 517 FMTFHGQQN----LKTVLDTMQHAVYLYDINHVIIDNLQFMMGQEHLTVDKFAVQDHIIG 572
Query: 442 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496
++FA + +CHV + HPR+ + I GSA + DN +++ +
Sbjct: 573 AFRKFATNSSCHVTLIIHPRKEED--DRELQTASIFGSAKASQEADNVLILQEKK 625
>gi|296221032|ref|XP_002756579.1| PREDICTED: twinkle protein, mitochondrial [Callithrix jacchus]
Length = 684
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/489 (21%), Positives = 190/489 (38%), Gaps = 69/489 (14%)
Query: 61 ISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKD 109
I+ +TL+R V R +V FP++ G KL+ K + + + +
Sbjct: 185 ITDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLQAKCQGDGVSYEETTIPQPS 242
Query: 110 TEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
+GL I ++++++ E+D L++ ++ L +++P G S + +P
Sbjct: 243 AYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPQGT-SCLPPALLP----- 296
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
YL+Q RI+ D A+ AR++ +RC VR P +
Sbjct: 297 -----------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLE 344
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
N L L ++ A + +FR +E+ S E W
Sbjct: 345 ALNRGL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLPWSRF 395
Query: 289 NELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 344
+L +L G ELT+ TG SGK+ +I ++ G + S E AR
Sbjct: 396 PDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARV 454
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLA 402
+L + AER ++ ++ W L I+ V+D
Sbjct: 455 MLTQF-------------AERRLEDQLDKYDHWADRFEDLPLYFMTFHGQQGIRTVVDTM 501
Query: 403 KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
+ AV + + +VID + +S ++ + ++FA + CHV V HPR+
Sbjct: 502 QHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLVIHPRK 561
Query: 463 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTI 521
+ + I GSA + DN ++I ++R GP R +QV +N+ G +
Sbjct: 562 EDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDV 614
Query: 522 GEAFLSYNR 530
G L +N+
Sbjct: 615 GIFPLEFNK 623
>gi|147907413|ref|NP_001084540.1| uncharacterized protein LOC414487 [Xenopus laevis]
gi|46250208|gb|AAH68751.1| MGC81247 protein [Xenopus laevis]
Length = 679
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/425 (23%), Positives = 174/425 (40%), Gaps = 75/425 (17%)
Query: 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
E++++I E+D L++ ++ + +++P GA S + +P YL+
Sbjct: 275 ETEVVITSREVDCLAIHQSTGVTTIALPRGA-SCLPPVLLP----------------YLE 317
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK--NDVDHFKDA---NEVLMYL 237
Q RI+L D ++ AR++ +RC +R K + + F D ++L
Sbjct: 318 QFKRIVLWLGDDLRSWEASKLFARKLNMKRCSLIRPGDKQPSPLHAFNDGLNIGKILKAS 377
Query: 238 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 297
P + K ++ +FR +E+ + + D+ W EL +L G
Sbjct: 378 LPASHKSII------------SFRQLREEV--FGQLENADQVA-GVKWNRFPELNKLLKG 422
Query: 298 ----ELTIVTGVPNSGKSEWI-----DALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
ELT+ TG SGK+ +I D I IN G F L N VR L K
Sbjct: 423 HRRGELTVFTGPTGSGKTTFISEYALDLCIQGINTLWG-SFEL----NNVR------LAK 471
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC--ENDSLPSIKWVLDLAKAAV 406
+ F + +R+ E+ ++ W L C +IK V+D + AV
Sbjct: 472 IMLTQF-------ALQRLE-EQLDKYDEWADKFEDLPLCFMTFHGQQNIKAVMDTMQHAV 523
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+ + ++ID + Q + M+ ++FA + CHV V HPR+ +
Sbjct: 524 YMYDITHVIIDNLQFMMGQENIYSDRFAAQDYMVGAFRKFATVNNCHVTVVIHPRKEDD- 582
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAF 525
+ I GSA + DN ++I ++R G R +QV +N+ G +G
Sbjct: 583 -DKELQTSSIFGSAKASQEADN-VLILQDRKLVTGQGKRHLQV----AKNRFDGEVGVFS 636
Query: 526 LSYNR 530
L +N+
Sbjct: 637 LEFNK 641
>gi|313227700|emb|CBY22848.1| unnamed protein product [Oikopleura dioica]
Length = 582
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 36/276 (13%)
Query: 273 RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+T+ D S + LNE L GELT+ +G GK+ ++ ++ + G K +
Sbjct: 269 QTAADSIKFSR-FSMLNECMGGLRKGELTLFSGHTGKGKTTFLSEYSIDLALN-GAKTLW 326
Query: 332 CSMENKVRE----HARKLLEKHIKKPFFEANYGGSAERMTVE-EFEQGKAWLSNTFSLIR 386
CS E K+ A +L +K S+E +E EF Q K L N L
Sbjct: 327 CSFEMKLEALQNMQAMQLCQK-------------SSEDCQMEYEFVQEK--LGNLGILAL 371
Query: 387 CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVK 444
++D K + HG+ ++ID L S + Y+SQ + M++
Sbjct: 372 NSEPGSMDPNELIDKLKELIENHGIDHIIIDNMQFLIFG---SSADDAYMSQDNTIRMLR 428
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPP----NLYDISGSAHFINKCDNGIVIHRNRDPEA 500
A H+ + HPR+ N + YD+SG A + + DN I++ ++D E+
Sbjct: 429 ELATFTDVHITVICHPRKTSNVSKKDGYAFLTEYDLSGRARSVQESDNVIILQTSQDIES 488
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
G + + + + K R+ +G IG + YNR T Y+
Sbjct: 489 G-VRKDWIQIHKCRHGELGKIG---VKYNRDTKTYL 520
>gi|270003724|gb|EFA00172.1| hypothetical protein TcasGA2_TC002994 [Tribolium castaneum]
Length = 403
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 59/401 (14%)
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 203
LN V +P+G +S+S+ +P+ L++ ++IL D A
Sbjct: 36 LNVVCLPNGV-NSLSQYVLPT----------------LERFQKLILWFGNDLKSWDSARH 78
Query: 204 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 263
A+++G RC+ VR +K + H + + K +V +A+ + NF +
Sbjct: 79 FAKKLGERRCFFVRPNEKQLLPHLVEGQD---------FKSIVNSAQPIWHKSITNFANL 129
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALIC 319
++ + E W+ L +L G ELT++TG GK+ +I
Sbjct: 130 RKDVFSDLQNIDKIE---GVKWKRFPALNKILRGHRRGELTVITGPTGCGKTTFISEYSL 186
Query: 320 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 379
++ G + S E + AR +L++ P E + +F+ L+
Sbjct: 187 DL-AMQGVNTLWGSFEIRNVRLARTMLQQFAGFPLDE----------NLSQFDS----LA 231
Query: 380 NTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436
+ F L+ + +IK V+D + A H + ++ID + S+ +
Sbjct: 232 DKFELLPIYFMTFHGQQTIKVVMDAVEHATYVHDIAHVIIDNVQFMMGITEDSRHMDRFW 291
Query: 437 SQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+Q ++ + FA CHV V HPR+ + N I G A + DN +I
Sbjct: 292 TQDVIIAAFRSFATRKNCHVTLVIHPRKERDEENLTTN--SIFGGAKASQEADNVFIIQD 349
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
R +Q+C +N+ G +G L +++ Y
Sbjct: 350 KRLTSTRGKKYLQIC----KNRYSGDLGVMPLDFDKAGLSY 386
>gi|157821325|ref|NP_001101069.1| twinkle protein, mitochondrial [Rattus norvegicus]
gi|149040260|gb|EDL94298.1| progressive external ophthalmoplegia 1 homolog (human) (predicted)
[Rattus norvegicus]
Length = 683
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 109/497 (21%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFNVRYLRSTRSLV--FPWFTPGSSGLRGLKLLGVEGQENGVQYV 235
Query: 106 QEKDTEKVFY----GLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLIGRRDTEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N+ L +L ++ A + +FR +E+ S +
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVDQA 388
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 513
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 514 RNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>gi|417706326|ref|ZP_12355385.1| gp61 domain protein [Shigella flexneri VA-6]
gi|333007159|gb|EGK26650.1| gp61 domain protein [Shigella flexneri VA-6]
Length = 760
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 92/199 (46%), Gaps = 32/199 (16%)
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ EGE+D +S + G ++ +SVP G ++ + E + L +
Sbjct: 1 MLCEGEIDCMSYAQYG-ISALSVPFGGGKGAKQQWIEFEYHN------------LDRFEE 47
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEV 245
I ++ D D G+ A E+A R+G RC V P +KD NE LM + + +
Sbjct: 48 IFISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQY 100
Query: 246 VENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTG 304
+ A + L++ R+++ D I+A+Y + ++ + W +L + + ELT+V G
Sbjct: 101 IGTASYFDPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNG 157
Query: 305 VPNSGKSEWIDALICNINE 323
V GK+ C +NE
Sbjct: 158 VNGHGKA-------CPLNE 169
>gi|189235245|ref|XP_970366.2| PREDICTED: similar to pom1 [Tribolium castaneum]
Length = 491
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 59/401 (14%)
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 203
LN V +P+G +S+S+ +P+ L++ ++IL D A
Sbjct: 124 LNVVCLPNGV-NSLSQYVLPT----------------LERFQKLILWFGNDLKSWDSARH 166
Query: 204 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 263
A+++G RC+ VR +K + H + + K +V +A+ + NF +
Sbjct: 167 FAKKLGERRCFFVRPNEKQLLPHLVEGQD---------FKSIVNSAQPIWHKSITNFANL 217
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALIC 319
++ + E W+ L +L G ELT++TG GK+ +I
Sbjct: 218 RKDVFSDLQNIDKIE---GVKWKRFPALNKILRGHRRGELTVITGPTGCGKTTFISEYSL 274
Query: 320 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 379
++ G + S E + AR +L++ P E + +F+ L+
Sbjct: 275 DL-AMQGVNTLWGSFEIRNVRLARTMLQQFAGFPLDE----------NLSQFDS----LA 319
Query: 380 NTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436
+ F L+ + +IK V+D + A H + ++ID + S+ +
Sbjct: 320 DKFELLPIYFMTFHGQQTIKVVMDAVEHATYVHDIAHVIIDNVQFMMGITEDSRHMDRFW 379
Query: 437 SQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+Q ++ + FA CHV V HPR+ + N I G A + DN +I
Sbjct: 380 TQDVIIAAFRSFATRKNCHVTLVIHPRKERDEENLTTN--SIFGGAKASQEADNVFIIQD 437
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
R +Q+C +N+ G +G L +++ Y
Sbjct: 438 KRLTSTRGKKYLQIC----KNRYSGDLGVMPLDFDKAGLSY 474
>gi|71897049|ref|NP_001026515.1| twinkle protein, mitochondrial precursor [Gallus gallus]
gi|78099071|sp|Q5ZIW1.1|PEO1_CHICK RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein
homolog; Flags: Precursor
gi|53134446|emb|CAG32332.1| hypothetical protein RCJMB04_23c24 [Gallus gallus]
Length = 669
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 198/499 (39%), Gaps = 69/499 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKFW 105
+A F ++ TL+R V R +V FP++ R KL+ + R +
Sbjct: 183 KAAFGIAPLADGTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQRGDAVSYT 240
Query: 106 QEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+E D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 241 EETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLALPRGA-TILPPA 299
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q R+ L D ++ AR++ +RC V+ P
Sbjct: 300 LLP----------------YLEQFRRVTLWLGDDLRSWEASKLFARKLNPKRCSLVQ-PG 342
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N L L +++ A + +FR +E+ + + E
Sbjct: 343 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLREEV---FGELANSEQV 393
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W EL +L G ELT+ TG SGK+ +I ++ +C++
Sbjct: 394 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFISEYALDLCTQG-----VCTLWG 448
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
+ +L + + + A R ++ E W L +
Sbjct: 449 SFEINNIRLAKIMLTQ---------FATRRLEDQLELYDEWADRFEDLPLYFMTFHGQQN 499
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
IK VLD + AV + + +V+D + +S ++ ++FA + CH+
Sbjct: 500 IKTVLDTMQHAVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKFATDNTCHI 559
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 513
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 560 TLVIHPRKEDD--EKELQTASIFGSAKASQEADN-VLILQDRKLTTGPGKRYLQVS---- 612
Query: 514 RNKVVGTIGEAFLSYNRVT 532
+N+ G +G L +++ +
Sbjct: 613 KNRFDGDVGVFPLEFSKAS 631
>gi|433610185|ref|YP_007042554.1| Replicative DNA helicase [Saccharothrix espanaensis DSM 44229]
gi|407888038|emb|CCH35681.1| Replicative DNA helicase [Saccharothrix espanaensis DSM 44229]
Length = 464
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 135/322 (41%), Gaps = 34/322 (10%)
Query: 223 DVDHFKDANEVLMYLGPGALKEVVE--NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
DVD D + +Y EV E E Y ++ + DEIDA R G G
Sbjct: 156 DVDEVVDRAQAAIY-------EVTERRTTEDYVVLEEL-LQPTMDEIDAIASR-GGSSLG 206
Query: 281 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 337
I TG+ L+EL N L PG++ IV P GKS +D A C++ G + S+E
Sbjct: 207 IPTGFADLDELTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSVKH--GLTSAIFSLEMS 264
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E ++L K + G RM+ +++ + +S +DS P++
Sbjct: 265 KTEIVMRMLSAEAKIRLGDMRGG----RMSDDDWTRLARRMSEISEAPMFVDDS-PNLTM 319
Query: 398 VLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA L RH +R +++D Y +L S++ + VS+ +K A+ V
Sbjct: 320 MEIRAKARRLKQRHDLRLVIVD-YLQLMSSGKRSESRQQEVSEFSRNLKLIAKELEVPVI 378
Query: 456 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 509
++ R + P L D+ S D I+I+R DP AG D +
Sbjct: 379 AISQLNRGPEQRTDKRPQLSDLRESGSLEQDADMVILINRPDAWERDDPRAGEAD---LI 435
Query: 510 VRKVRNKVVGTIGEAF-LSYNR 530
+ K R TI A L Y+R
Sbjct: 436 IAKHRAGPTATITVAHQLHYSR 457
>gi|410975924|ref|XP_003994377.1| PREDICTED: twinkle protein, mitochondrial isoform 1 [Felis catus]
Length = 684
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 173/430 (40%), Gaps = 66/430 (15%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 247 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 296
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q RI+L D A+ AR++ +RC VR P + N
Sbjct: 297 -------YLEQFRRIVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDRQPRPLEALNR 348
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L +L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------SLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGIRWNRFPDLN 399
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 459
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 460 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 500
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + + +VID + P+S ++ ++FA ++CHV V HPR
Sbjct: 501 MQHAVYVYDICHVVIDNLQFMMGHEPLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPR 560
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 561 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 613
Query: 521 IGEAFLSYNR 530
+G L +N+
Sbjct: 614 VGVFPLEFNK 623
>gi|422023029|ref|ZP_16369535.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
gi|414094759|gb|EKT56423.1| hypothetical protein OO7_10807 [Providencia sneebia DSM 19967]
Length = 368
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN----EVLMY 236
L + + I L+ D D G+ A+E+A R+G RC V PKK D++ A E++ Y
Sbjct: 29 LDRFTEIWLSLDADEVGREAAKEIANRLGEYRCRLVSLPKK-DINECLQAGITQEEIIKY 87
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
L E A + L + R++ D I A+Y + +++ + W LN ++
Sbjct: 88 L---------ETATYFDPDELCSAREFMQDTIQAFYGK---EQYLFRSPWETLNHQFSFR 135
Query: 296 PGELTIVTGVPNSGKSEWIDALIC 319
ELTI+ GV GKSE + ++C
Sbjct: 136 ESELTILNGVNGHGKSEILGHMLC 159
>gi|397510280|ref|XP_003825527.1| PREDICTED: twinkle protein, mitochondrial [Pan paniscus]
Length = 684
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 206/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTRVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|354505234|ref|XP_003514676.1| PREDICTED: LOW QUALITY PROTEIN: twinkle protein, mitochondrial-like
[Cricetulus griseus]
Length = 686
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 196/498 (39%), Gaps = 71/498 (14%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + + N+ +
Sbjct: 178 RVMFGLSKVTDDTLRRFSVRYLRSTRSLV--FPWFTPGGSGLRGLKLLGAEGQG-NEVQY 234
Query: 106 QEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK 159
E + +GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 235 VETTIPRPGAYHNLFGLPLISRRDAEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPP 293
Query: 160 KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 219
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 294 ALLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-P 336
Query: 220 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 337 GNQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQ 387
Query: 280 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 388 AAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFE 446
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLP 393
AR +L + + R+ E+ ++ + W L
Sbjct: 447 ISNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQ 493
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + V +VID + S ++ ++FA ++CH
Sbjct: 494 SIRSVVDTMQHAVYVYDVCHVVIDNLQFMMGHEQFSTDRIAAQDYIVGAFRKFATDNSCH 553
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 554 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 607
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 608 -KNRFDGDVGVFPLEFNK 624
>gi|344256942|gb|EGW13046.1| Twinkle protein, mitochondrial [Cricetulus griseus]
Length = 690
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 111/498 (22%), Positives = 196/498 (39%), Gaps = 71/498 (14%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + + N+ +
Sbjct: 178 RVMFGLSKVTDDTLRRFSVRYLRSTRSLV--FPWFTPGGSGLRGLKLLGAEGQG-NEVQY 234
Query: 106 QEKDTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSK 159
E + +GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 235 VETTIPRPGAYHNLFGLPLISRRDAEVVLTSRELDSLALSQSTGLPTLSLPRGT-VCLPP 293
Query: 160 KNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWP 219
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 294 ALLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-P 336
Query: 220 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 337 GNQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQ 387
Query: 280 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 388 AAGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFE 446
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLP 393
AR +L + + R+ E+ ++ + W L
Sbjct: 447 ISNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQ 493
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + V +VID + S ++ ++FA ++CH
Sbjct: 494 SIRSVVDTMQHAVYVYDVCHVVIDNLQFMMGHEQFSTDRIAAQDYIVGAFRKFATDNSCH 553
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 554 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 607
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 608 -KNRFDGDVGVFPLEFNK 624
>gi|39725942|ref|NP_068602.2| twinkle protein, mitochondrial isoform A [Homo sapiens]
gi|74752111|sp|Q96RR1.1|PEO1_HUMAN RecName: Full=Twinkle protein, mitochondrial; AltName:
Full=Progressive external ophthalmoplegia 1 protein;
AltName: Full=T7 gp4-like protein with
intramitochondrial nucleoid localization; AltName:
Full=T7-like mitochondrial DNA helicase; Flags:
Precursor
gi|14582616|gb|AAK69558.1|AF292004_1 putative T7-like mitochondrial DNA helicase [Homo sapiens]
gi|119570179|gb|EAW49794.1| progressive external ophthalmoplegia 1, isoform CRA_b [Homo
sapiens]
gi|170560895|gb|ACB21043.1| chromosome 10 open reading frame 2 [Homo sapiens]
gi|311349658|gb|ADP92014.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349660|gb|ADP92015.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349662|gb|ADP92016.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349664|gb|ADP92017.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349666|gb|ADP92018.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349668|gb|ADP92019.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349670|gb|ADP92020.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349672|gb|ADP92021.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349674|gb|ADP92022.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349676|gb|ADP92023.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349678|gb|ADP92024.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349680|gb|ADP92025.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349682|gb|ADP92026.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349684|gb|ADP92027.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349686|gb|ADP92028.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349688|gb|ADP92029.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349690|gb|ADP92030.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349692|gb|ADP92031.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349694|gb|ADP92032.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349696|gb|ADP92033.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349698|gb|ADP92034.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349700|gb|ADP92035.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349702|gb|ADP92036.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349704|gb|ADP92037.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349706|gb|ADP92038.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349708|gb|ADP92039.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349710|gb|ADP92040.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349712|gb|ADP92041.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349714|gb|ADP92042.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349716|gb|ADP92043.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349718|gb|ADP92044.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349720|gb|ADP92045.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349722|gb|ADP92046.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349724|gb|ADP92047.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349726|gb|ADP92048.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349728|gb|ADP92049.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349730|gb|ADP92050.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349732|gb|ADP92051.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349734|gb|ADP92052.1| mitochondrial twinkle protein [Homo sapiens]
gi|311349736|gb|ADP92053.1| mitochondrial twinkle protein [Homo sapiens]
Length = 684
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 206/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|443670600|ref|ZP_21135733.1| Replicative DNA helicase [Rhodococcus sp. AW25M09]
gi|443416825|emb|CCQ14070.1| Replicative DNA helicase [Rhodococcus sp. AW25M09]
Length = 464
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 19/267 (7%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 191 MDEIDSIASR-GGISLGVPTGFAELDEITNGLHPGQMIIVAARPGVGKSTLSMDFMRSCS 249
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 250 IKHGMPSVIFSLEMSRTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 305
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L R+G++ +V+D + + V + E VS
Sbjct: 306 EAPLFVDDS-PNLTMMEIRAKARRLKQRNGLKLIVVDYLQLMSSGKKVESRQQE-VSDFS 363
Query: 441 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----- 494
+K A+ C V V R + P + D+ S D I++HR
Sbjct: 364 RQLKLLAKELECPVVAVCQLNRGPEQRTDKKPMVSDLRESGSLEQDADMVILLHRPDAIE 423
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 424 RDDPRGGEAD---LILGKHRNGPTATI 447
>gi|419011917|ref|ZP_13559284.1| hypothetical protein ECDEC1D_0750 [Escherichia coli DEC1D]
gi|377863851|gb|EHU28653.1| hypothetical protein ECDEC1D_0750 [Escherichia coli DEC1D]
Length = 375
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 129/319 (40%), Gaps = 38/319 (11%)
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGPGALKEVVENAELY 252
D G+ A E+A R+G RC V P +KD NE LM + + + + A +
Sbjct: 12 DDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTEDEIWQYIGTASYF 64
Query: 253 PIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKS 311
L++ R+++ D I+A+Y + ++ + W +L + + ELT+V GV GK+
Sbjct: 65 DPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAELTLVNGVNGHGKT 121
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI---KKPFFEANYGGSAERMTV 368
E + + G K + S+E K ++L + P E + +
Sbjct: 122 EVVGHMALEAMRQ-GVKTCIASLELKPGILLKRLTRQATCCKMPPVLEID--------SA 172
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+F + W+ + + ++++ A R+G++ +ID +
Sbjct: 173 FKFYDERLWVFGLTGTAKADR--------LIEIFDYARRRYGIQLFIIDSLMKCGIGDDD 224
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +V + F HV V H R+ + +P D+ GS + DN
Sbjct: 225 YNGQKAFVDSICD----FKNKTNSHVILVTHSRK-GDSEEKPTGKMDVKGSGAITDLTDN 279
Query: 489 GIVIHRNRDPEAGPIDRVQ 507
+I RN+ E + RVQ
Sbjct: 280 LFIIWRNKARERA-LQRVQ 297
>gi|426365910|ref|XP_004050009.1| PREDICTED: twinkle protein, mitochondrial isoform 1 [Gorilla
gorilla gorilla]
Length = 684
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 206/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEIQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|348578625|ref|XP_003475083.1| PREDICTED: twinkle protein, mitochondrial-like [Cavia porcellus]
Length = 670
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 161/413 (38%), Gaps = 55/413 (13%)
Query: 125 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 184
++++ E+D L++ +A L +++P G S+ +P YL+Q
Sbjct: 259 EVVLTSRELDSLALSQATGLPTLALPRGT-LSLPPALLP----------------YLEQF 301
Query: 185 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244
RIIL D A+ AR++ +RC+ VR P + N+ L L
Sbjct: 302 RRIILWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALNQGL------NLSR 354
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELT 300
++ A + +FR +E+ S E W +L +L G ELT
Sbjct: 355 ILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGIRWSRFPDLNRLLKGHRKGELT 411
Query: 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 412 VFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF----------- 459
Query: 361 GSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418
+ R+ E+ ++ W L SI+ V+D AV + V +VID
Sbjct: 460 -AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRSVIDTMHHAVYVYDVCHVVIDN 517
Query: 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISG 478
+ +S ++ ++FA CHV V HPR+ + + I G
Sbjct: 518 LQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSNCHVTLVIHPRKEDD--DKELQTASIFG 575
Query: 479 SAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
SA + DN ++I ++R GP R +QV +N+ G IG L +N+
Sbjct: 576 SAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDIGVFPLEFNK 623
>gi|242007891|ref|XP_002424751.1| twinkle protein, putative [Pediculus humanus corporis]
gi|212508254|gb|EEB12013.1| twinkle protein, putative [Pediculus humanus corporis]
Length = 691
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 155/378 (41%), Gaps = 48/378 (12%)
Query: 171 YQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDA 230
Y YL + + + I+ GD + A+++G +RC+ V+ +D A
Sbjct: 262 YSYLPQSSLPVFEKYENIILWLGDAKAIDASSSFAKKLGEKRCFIVK-----PIDKQISA 316
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE 290
+ V+ G + +++NA+ + +F D +EI + D+F W
Sbjct: 317 SSVVS--KGGQILPILKNAKSAWHESIISFCDLREEILSEIQNV--DQFS-GIKWNRFPT 371
Query: 291 LYNVLPG----ELTIVTGVPNSGKSEWI-----DALICNINEHAGWKFVLCSMENKVREH 341
L +L G ELT++TG SGK+ +I D I +N G S E K
Sbjct: 372 LNKILKGHRRGELTVLTGPTGSGKTTFISEYSLDLAIQGVNTLWG------SFEIKNVRL 425
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVL 399
A+K+L+++ + P E V++F W T + S++ V+
Sbjct: 426 AKKMLQQYSRIPLEE----------NVDKFNY---WADKFETLPIYFMTFHGQQSLRAVM 472
Query: 400 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFV 457
D + H + +VID + S + + Q ++ + FA CHV V
Sbjct: 473 DAVEHCSYVHDIAHVVIDNVQFMIDVSGDSGSIDRFWKQDVLIQSFRSFASKFNCHVTLV 532
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
HP++ + + N I G A + DN ++I +N D ++ + ++ +N+
Sbjct: 533 MHPKKGMDGINLSIN--SIFGGAKAAQEADNVMII-QNYDTDSFVKKKY---LQISKNRF 586
Query: 518 VGTIGEAFLSYNRVTGEY 535
G +G L +N+ + EY
Sbjct: 587 SGDLGRMSLHFNKSSFEY 604
>gi|395741924|ref|XP_002821139.2| PREDICTED: twinkle protein, mitochondrial [Pongo abelii]
Length = 506
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 107/495 (21%), Positives = 193/495 (38%), Gaps = 71/495 (14%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFWQEK 108
F ++ +TL+R V R +V FP++ G KL+ K + N ++E
Sbjct: 2 FGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCQG-NGVSYEET 58
Query: 109 DTEKV-----FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
+ +GL I ++++++ E+D L++ ++ L +++P G + + +
Sbjct: 59 TIPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALL 117
Query: 163 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 222
P YL+Q RI+ D A+ AR++ +RC+ VR P
Sbjct: 118 P----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQ 160
Query: 223 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIS 282
+ N G L ++ A + +FR +E+ S E
Sbjct: 161 HPRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAG 211
Query: 283 TGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 212 VRWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISN 270
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIK 396
AR +L + AE ++ ++ W L SI+
Sbjct: 271 VRLARVMLTQF-------------AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIR 317
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
V+D + A+ + + +VID + +S ++ + ++FA + CHV
Sbjct: 318 TVIDTMQHAIYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTL 377
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRN 515
V HPR+ + I GSA + DN ++I ++R GP R +QV +N
Sbjct: 378 VIHPRKEDE--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KN 430
Query: 516 KVVGTIGEAFLSYNR 530
+ G +G L +N+
Sbjct: 431 RFDGDVGVFPLEFNK 445
>gi|383766387|ref|YP_005445368.1| replicative DNA helicase [Phycisphaera mikurensis NBRC 102666]
gi|381386655|dbj|BAM03471.1| replicative DNA helicase [Phycisphaera mikurensis NBRC 102666]
Length = 493
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 117/283 (41%), Gaps = 34/283 (12%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
++ FD+++A + G+ TG++ L+E+ N L PGEL IV P+ GK+ A
Sbjct: 209 LQETFDKLEAQDGQVI---TGVETGFKDLDEMTNGLQPGELIIVAARPSMGKT----AFA 261
Query: 319 CNINEH----AGWKFVLCSMENKVREHARKLL------EKHIKKPFFEANYGGSAERMTV 368
N++EH AG + S+E ++ A++LL H + + S V
Sbjct: 262 LNVSEHIGAVAGRPVGVFSLEMSKQQLAQRLLCSRSQVNSHRLRRNMLSREDFSKLSHAV 321
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
E + ++ +T L ++ + A+ R+G+ L++D Y +L
Sbjct: 322 GELSEAPIYIDDTAGL---------TLMGLRAKARRMKQRYGIEALMVD-YLQLMSNPST 371
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
VS + VK A+ C + ++ R G P + D+ S D
Sbjct: 372 KDGRQNEVSAISRGVKALARELECPIICLSQLNRAAEQREGHRPRMSDLRESGSIEQDAD 431
Query: 488 NGIVIHRNR-----DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+++HR DPE + +V V K RN GT+ F
Sbjct: 432 VIMMLHREDYYHRGDPEHVDNNEAEVIVTKQRNGPTGTVKLMF 474
>gi|291297673|ref|YP_003508951.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
gi|290566893|gb|ADD39858.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728]
Length = 474
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 111/275 (40%), Gaps = 35/275 (12%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEI+A ++G G+ TG+ L+ L N L PG+L IV G P +GKS I +
Sbjct: 202 LDEIEAV-GESAGAMTGVPTGFADLDRLLNGLQPGQLIIVAGRPGAGKSTAAMDFIRHAA 260
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG--------SAERMTVEEFEQG 374
H + S+E E ++L + P G A RM E +
Sbjct: 261 LHHQQAAAMFSLEMSKVEIVMRVLSAETRVPLHVLRSGQLSDDDWTRLARRMG--EISEA 318
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTE 432
++ +T PS+ + AKA L RH ++ +V+D + + V +
Sbjct: 319 PMFVDDT-----------PSMTLMEIRAKARRLKQRHNLKLIVVDYLQLMSSPKRVESRQ 367
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
E VS++ +K A+ C V VA R + P L D+ S D I+
Sbjct: 368 QE-VSEISRGMKLLAKEVECPVIAVAQLNRGPEQRTDKRPQLSDLRESGSLEQDADVVIL 426
Query: 492 IHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 521
+HR+ P AG D + V K RN TI
Sbjct: 427 LHRDDYYDKESPRAGEADMI---VAKHRNGATDTI 458
>gi|421745200|ref|ZP_16183058.1| replicative DNA helicase [Cupriavidus necator HPC(L)]
gi|409776222|gb|EKN57641.1| replicative DNA helicase [Cupriavidus necator HPC(L)]
Length = 463
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR T+ D G+ TG+ L+ + + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDTTTDVTGVPTGFIDLDRMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|10438015|dbj|BAB15148.1| unnamed protein product [Homo sapiens]
gi|21707100|gb|AAH33762.1| C10orf2 protein [Homo sapiens]
Length = 506
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 105/494 (21%), Positives = 191/494 (38%), Gaps = 69/494 (13%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKF 104
F ++ +TL+R V R +V FP++ G KL+ K + + +
Sbjct: 2 FGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETT 59
Query: 105 WQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 163
+GL I ++++++ E+D L++ ++ L +++P G + + +P
Sbjct: 60 IPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP 118
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
YL+Q RI+ D A+ AR++ +RC+ VR P
Sbjct: 119 ----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQ 161
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
+ N G L ++ A + +FR +E+ S E
Sbjct: 162 PRPLEALN------GGFNLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGL 212
Query: 284 GWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 213 RWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNV 271
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKW 397
AR +L + AE ++ ++ W L SI+
Sbjct: 272 RLARVMLTQF-------------AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRT 318
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
V+D + AV + + ++ID + +S ++ + ++FA + CHV V
Sbjct: 319 VIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLV 378
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNK 516
HPR+ + + I GSA + DN ++I ++R GP R +QV +N+
Sbjct: 379 IHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNR 431
Query: 517 VVGTIGEAFLSYNR 530
G +G L +N+
Sbjct: 432 FDGDVGVFPLEFNK 445
>gi|126273497|ref|XP_001379462.1| PREDICTED: twinkle protein, mitochondrial-like [Monodelphis
domestica]
Length = 987
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 196/498 (39%), Gaps = 67/498 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRD----FN 101
RA F +S TL+R +V R +V FP++ G KL+ + + +
Sbjct: 180 RAMFNLAKVSDATLKRFQVRYLRAARSLV--FPWFSPGGLSLRGLKLLKAEGKGDGVCYL 237
Query: 102 KKFWQEKDTEKVFYGLDDIEGESDIIIVEG-EMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+ +GL I +++ G E+D L++ +A L +++P G + +
Sbjct: 238 ETTLPRPSAYHNLFGLPLISRRDVEVVLTGRELDSLALHQATGLPTLALPRGL-ACLPPT 296
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q RI+L D A+ AR++ +RC VR
Sbjct: 297 LLP----------------YLEQFRRIVLWLGDDLRAWEAAKLFARKLNPKRCSLVR--- 337
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
H + + L L+++++ A + +FR +E+ S E
Sbjct: 338 -PGDQHPRPLEALTQGLN---LQKILKGALPAGHKSIVSFRQLREEV---LGELSNVEQV 390
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 391 AGVRWGRYPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 449
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
AR +L + + G E E+ E+ W +L +
Sbjct: 450 SNVRLARIMLTQFVM---------GRLE----EKLEEYDKWADRFEDLALYFMTFHGQQN 496
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
I+ V+D K AV + + ++ID + Q +S ++ ++FA ++CHV
Sbjct: 497 IRTVIDTMKHAVYVYDICHVIIDNLQFMMGQEQLSSDRIAVQDYIVGAFRKFATDNSCHV 556
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
V HPR+ + I GSA + DN ++I +++ GP R ++ +
Sbjct: 557 TLVIHPRKEDG--DKELQTASIFGSAKASQEADN-VLILQDKKLATGPGKRY---LQVAK 610
Query: 515 NKVVGTIGEAFLSYNRVT 532
N+ G +G L +N+ +
Sbjct: 611 NRFDGDVGVFPLEFNKSS 628
>gi|383783254|ref|YP_005467821.1| putative replicative DNA helicase [Actinoplanes missouriensis 431]
gi|381376487|dbj|BAL93305.1| putative replicative DNA helicase [Actinoplanes missouriensis 431]
Length = 484
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 110/275 (40%), Gaps = 35/275 (12%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEI+A G G+ TG++ L+ L N L G+L IV G P GKS N
Sbjct: 212 LDEIEAV-GAAGGVMTGVPTGFQDLDRLLNGLHAGQLIIVAGRPGLGKSTVSMDFARNAA 270
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG--------GSAERMTVEEFEQG 374
+G + S+E E +LL + P G A RM E Q
Sbjct: 271 IQSGHASAIFSLEMSKIEMVMRLLSAEARVPLHTLRSGQLSDDDWTKLARRMG--EISQA 328
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTE 432
++ +T P++ + AKA L RH +R LVID Y +L +++
Sbjct: 329 PIFVDDT-----------PNMNLMEIRAKARRLKQRHNLRLLVID-YLQLMSSPKKTESR 376
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ VS++ +K A+ C V V+ R + P L D+ S D I+
Sbjct: 377 QQEVSELSRGLKLLAKEIECPVIAVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVIL 436
Query: 492 IHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 521
+HR+ P AG D + V K RN T+
Sbjct: 437 LHRDDYYDKESPRAGEADFI---VAKHRNGPTDTV 468
>gi|395828255|ref|XP_003787301.1| PREDICTED: twinkle protein, mitochondrial [Otolemur garnettii]
Length = 684
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 118/502 (23%), Positives = 197/502 (39%), Gaps = 79/502 (15%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + + +
Sbjct: 177 RTMFGLNKVTDDTLRRFSVRYLRSARSLV--FPWFYPGSWGLRGLKLLGAEGQGDGVHYI 234
Query: 106 QEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
Q Y GL I + ++++ E+D L+++++ L +++P G S +
Sbjct: 235 QTTIPRPGAYHNLFGLPLISHRDVEVVLTSRELDSLALKQSTGLPTLALPRGT-SCLPPA 293
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 294 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 336
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N L L ++ +A + +FR +E+ S E
Sbjct: 337 DQQPCPLEALNRGL------NLSRILRSALPAWHKSIVSFRQLREEV---LGELSNVEQV 387
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCS 333
W +L +L G ELT+ TG SGK+ +I AL +C+ + W S
Sbjct: 388 AGVRWSRFPDLSRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQGVNTLWGSFEIS 447
Query: 334 MENKVR----EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 389
R + A LE+ + K Y A+R FE L F +
Sbjct: 448 NVRLARVMLTQFAMGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ 492
Query: 390 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449
SI+ V+D + AV + + +VID + +S ++ ++FA
Sbjct: 493 ----SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATD 548
Query: 450 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQV 508
+CHV V HPR+ + + I GSA + DN I+I ++R GP R +QV
Sbjct: 549 TSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-ILILQDRKLVTGPGKRYLQV 605
Query: 509 CVRKVRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 606 S----KNRFDGDVGVFPLEFNK 623
>gi|423413993|ref|ZP_17391113.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|423430223|ref|ZP_17407227.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
gi|401098660|gb|EJQ06671.1| hypothetical protein IE1_03297 [Bacillus cereus BAG3O-2]
gi|401120132|gb|EJQ27930.1| hypothetical protein IE7_02039 [Bacillus cereus BAG4O-1]
Length = 338
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 88/204 (43%), Gaps = 34/204 (16%)
Query: 55 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEKV 113
Y +R IS E + ++ R VVI + + NG+LVN KYR + K FW EKD + +
Sbjct: 137 YLGQRGISEEVQWQMKIGYDRFRQAVVIPW-FDTNGRLVNIKYRKVSSKVFWYEKDGKPI 195
Query: 114 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
YGL + +I + E E+D +S AG G + S N EQ
Sbjct: 196 GDLIYGLH-LAYRRNIKRAVYCEAEIDAMSFMTAGVF-------GLANGGSSFNERKAEQ 247
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKKNDVDH 226
K +++ D DP G+ L +EL + + G+ R V
Sbjct: 248 ILK-----------SPIEELVIVADNDPAGEKLRKELEKYLKGKIRL------TNGYVRR 290
Query: 227 FKDANEVLMYLGPGALKEVVENAE 250
FKDAN L+ G +L VV+N E
Sbjct: 291 FKDANVALIKEGASSLVSVVDNVE 314
>gi|336120758|ref|YP_004575544.1| replicative DNA helicase [Microlunatus phosphovorus NM-1]
gi|334688556|dbj|BAK38141.1| replicative DNA helicase [Microlunatus phosphovorus NM-1]
Length = 471
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 80/310 (25%), Positives = 127/310 (40%), Gaps = 25/310 (8%)
Query: 234 LMYLGPGALKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGI 281
+ Y G G + E+V+ AE+Y + DY DE++A R G G+
Sbjct: 157 MSYSGEGEVDEIVDRAQAEVYAVTERRATEDYKPLSELMQPTLDEMEAISSR-DGSFGGV 215
Query: 282 STGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
TG+ L+EL N L PG++ IV P GKS L + + G V+ S+E E
Sbjct: 216 PTGFSELDELTNGLHPGQMVIVAARPGCGKSTLALDLARSASIKNGLTSVIFSLEMSQIE 275
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
+LL + P G RM+ +++ + A + +DS P++ +
Sbjct: 276 ITMRLLSAEAQIPLGHIRGG----RMSDDDWSRVAAKMGQVSEAPLYIDDS-PNLTMMEI 330
Query: 401 LAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
AKA L RH ++ +VID + + V + E VS+ +K A+ V ++
Sbjct: 331 RAKARRLKQRHDLKLVVIDYIQLMTSGKRVESRQLE-VSEFSRQIKLLAKELEVPVVALS 389
Query: 459 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRN 515
R + P L D+ S D I+++R D E+ V K RN
Sbjct: 390 QLNRGPEQRTDKRPMLSDLRESGSLEQDADMVILLNRPDLYDKESDRAGEADFDVAKHRN 449
Query: 516 KVVGTIGEAF 525
+I AF
Sbjct: 450 GPTKSITVAF 459
>gi|302343159|ref|YP_003807688.1| replicative DNA helicase [Desulfarculus baarsii DSM 2075]
gi|301639772|gb|ADK85094.1| replicative DNA helicase [Desulfarculus baarsii DSM 2075]
Length = 463
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 38/279 (13%)
Query: 273 RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G G++TG++AL+ L L PG+L I+ G P+ GK+ + + N G +
Sbjct: 181 KNKGQVLGVTTGFKALDRLTTGLQPGDLIIIAGRPSMGKTAFALNIAANAALRGGVPTAV 240
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-- 389
S+E + +LL EA GS R Q + W + T + R
Sbjct: 241 FSLEMSAEQLGLRLLAS-------EARVSGSKIRSGF--LNQNQDWPNLTEAADRLSQAP 291
Query: 390 ---DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
D P+I + +KA L+ H + GLV+ Y +L R S + + +S + +K
Sbjct: 292 IFIDDTPAITVLEMRSKARRLKSEHNL-GLVLVDYLQLMRGRANSDSREQEISDISRSLK 350
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHRNR---- 496
A+ V ++ QL+ V E PN L D+ S D I+R++
Sbjct: 351 ALAKELDLPVVALS---QLNRKVEERPNKRPILSDLRESGAIEQDADVIAFIYRDKVYRQ 407
Query: 497 --------DPEAGPIDRV-QVCVRKVRNKVVGTIGEAFL 526
D P D + ++ + K RN GT+ AFL
Sbjct: 408 KSNKEDGDDAPVMPDDNIAEIIIGKQRNGPTGTVKLAFL 446
>gi|408384981|gb|AFU62414.1| replicative DNA helicase [Escherichia phage EC6]
Length = 661
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 197/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 123 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 182
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 183 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 236
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 237 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 295
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 296 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 348
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + + +E+ E L H+ K
Sbjct: 349 GL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEELMEMLCAIHLSK 406
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E ++ A LS + ++ +L+ V +
Sbjct: 407 QISEIPY----DERDWDELKEAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 462
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 463 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 520
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 521 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 577
Query: 528 YNRVTG 533
YN TG
Sbjct: 578 YNPDTG 583
>gi|410582462|ref|ZP_11319568.1| replicative DNA helicase [Thermaerobacter subterraneus DSM 13965]
gi|410505282|gb|EKP94791.1| replicative DNA helicase [Thermaerobacter subterraneus DSM 13965]
Length = 444
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 22/273 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 320
D F+ I+ Y G+ G+ TG+R L+ + L P EL I+ P+ GK+ ++ +
Sbjct: 169 DTFEHIERLYLH-QGETIGVPTGFRDLDSMLAGLHPSELIILAARPSQGKTTLALNMVAH 227
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQG 374
H G+ + S+E + A +LL + G AE R+T + +
Sbjct: 228 AAAH-GYPVGVFSLEMSRDQLAMRLLAAEARLNQQRLRTGMLAEDDWPRLTDAIGRLSEL 286
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
++ +T +L SI V A+ H + LV+D Y +L H R +++ +
Sbjct: 287 PVFIDDTPNL---------SIMEVRARARRMKAEHDIGLLVLD-YLQLMHTRGRAESRQQ 336
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
+S++ +K A+ V ++ R + P L D+ S D + I+
Sbjct: 337 EISEISRSLKALARELKVPVLALSQLSRAVEQRQDRRPQLSDLRESGAIEQDADVVLFIY 396
Query: 494 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
N PE + V++ V K RN G++ FL
Sbjct: 397 HN--PEDAAENVVEIIVAKQRNGPTGSVKLYFL 427
>gi|262067762|ref|ZP_06027374.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
gi|291378488|gb|EFE86006.1| DNA primase [Fusobacterium periodonticum ATCC 33693]
Length = 761
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 75 RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEM 133
R G + P +V KYR +KK W EK + +I ++IVEGE+
Sbjct: 109 RMGTHESMMIPVTNGETVVGIKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEI 168
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D LS EAG N VS+P GA T + + K +L + +II+ATD
Sbjct: 169 DLLSALEAGVENTVSLPSGA---------------TNIKCIKTQKNWLSKFQKIIIATDD 213
Query: 194 DPPGQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLG 238
D G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 214 DEAGV----EARKRIVHELRDLLIPLYKTYFYKK------KDVNEVLVKNG 254
>gi|117929290|ref|YP_873841.1| primary replicative DNA helicase [Acidothermus cellulolyticus 11B]
gi|117649753|gb|ABK53855.1| primary replicative DNA helicase [Acidothermus cellulolyticus 11B]
Length = 452
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 131/316 (41%), Gaps = 31/316 (9%)
Query: 222 NDVDHFKDANEVLMYLGPGALKEVV--ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
+DVD DA + ++ +V ++E Y ++ + DEI+A HR G
Sbjct: 142 SDVDEVVDAAQAAIF-------DVTTRRDSEDYVVLEAL-LQPTLDEIEASGHRGIG-LT 192
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSMENK 337
G+ TG+ L+ L N L PG+L +V P GKS +D C H VL S+E
Sbjct: 193 GVPTGFADLDALTNGLHPGQLIVVAARPAMGKSTLALDVARCAAIRHQ-LTTVLFSLEMS 251
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E +LL + P G ++ +++ + L S +DS P++
Sbjct: 252 KHEITMRLLSAESRVPLQALRTG----QLRDDDWMKLTRRLGELASAPLYIDDS-PNLSM 306
Query: 398 VLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA L RH +R +++D Y +L + + VSQ+ +K A+ V
Sbjct: 307 MEIRAKARRLRQRHDLRLVIVD-YLQLMTSHTRVENRQQEVSQISRSLKLLAKELGVPVV 365
Query: 456 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 509
++ R + P L D+ S D I++HR P AG D +
Sbjct: 366 ALSQLNRGPEQRTDKRPQLADLRESGAIEQDADVVILLHREDMYEKESPRAGEAD---LI 422
Query: 510 VRKVRNKVVGTIGEAF 525
V K RN T+ AF
Sbjct: 423 VAKHRNGPTATLTVAF 438
>gi|448937050|gb|AGE60593.1| DNA primase [Pelagibacter phage HTVC019P]
Length = 532
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 108/470 (22%), Positives = 195/470 (41%), Gaps = 61/470 (12%)
Query: 82 IAFPYWRNGKLVNCKYRDFNKKF-WQEKDTEKVFYGLDDIEGESD-IIIVEGEMDKLSME 139
IA Y + +LV K R +K F W E +G + G+ I + EGE+D LS+
Sbjct: 93 IANYYNDSKELVAQKLRYPSKDFQWLGNPKEAGLFGQETCRGKGKYITVTEGEIDCLSIS 152
Query: 140 EA--GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPG 197
+A + VS+ GA + KK++ + +L+ +I D D G
Sbjct: 153 QAFGNDFDFVSIKTGAAGA--KKDIQKSLE------------FLEGYENVIFMYDQDVHG 198
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
A E A+ + + P KDANE+L+ LK+ + NA+ Y G+
Sbjct: 199 VEAAVECAKLLTPNKAKIASLP-------LKDANEMLLAGKTDELKKAMWNAKPYRPDGI 251
Query: 258 FNFRDYFDEI---DAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEW 313
+ FD+I D Y +++LN+ + + GELT +T GKS +
Sbjct: 252 VLGSEIFDDIMKEDKY--------VTAQYPFKSLNDKTHGLRKGELTTITAGTGVGKSSF 303
Query: 314 IDALICN-INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372
+ + + + G ++ ++E ++ A ++ H+KKP G S ++ E F+
Sbjct: 304 CRHVALDLLKQDFGVGYI--ALEESIKRSALGIMGVHLKKPLHLTREGISETQLQ-ETFK 360
Query: 373 Q----GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
G +L N F DSL + + LAK+ + V + + L +
Sbjct: 361 STIGNGNFYLYNHFG--NTVADSL--LNKIRYLAKSCEVDFVVLDHLHMALSALGDEH-- 414
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN----WVGEPPNLYDISGSAHFIN 484
+ E + + ++ ++ + V ++H R+ G+ + + GSA
Sbjct: 415 TSDERKLIDYFVSKLRTLVEETGIGVILISHLRRSEGDKGFEDGKEVTMNSLRGSASIGQ 474
Query: 485 KCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D ++I NRD ++ D+ + ++N+ G G+A L Y+ TG
Sbjct: 475 LSD--LIIGINRDIKS---DKKLANLTILKNRFSGETGKACTLLYDLDTG 519
>gi|194289919|ref|YP_002005826.1| replicative DNA helicase [Cupriavidus taiwanensis LMG 19424]
gi|193223754|emb|CAQ69761.1| replicative DNA helicase [Cupriavidus taiwanensis LMG 19424]
Length = 463
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR T+ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDTTTDVTGVPTGFIDLDKMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLYIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|397571773|gb|EJK47953.1| hypothetical protein THAOC_33293 [Thalassiosira oceanica]
Length = 545
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 121/292 (41%), Gaps = 55/292 (18%)
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ 183
+ +++ EGE D +++ +A VS+P+G +++P + L++
Sbjct: 211 TSVVLTEGEFDAMAVCQATGRPAVSLPNGC------RSLPVQ-----------AVQMLER 253
Query: 184 ASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND-------------VDHFKDA 230
I+L D D PG+ AE AR++G ERC VR K + KDA
Sbjct: 254 FDTIVLWMDSDGPGREGAEMFARKLGVERCLVVRPSGKRGRREGEEGAGSGPAAEVPKDA 313
Query: 231 NEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI---DAYYHRTSGDEFGISTGWRA 287
NE L LG L E++E A P + F D D++ + + G G+ +
Sbjct: 314 NEAL--LGGWDLDELIEEATNLPHERILRFADVRDQVLHEIVHPDKYRGTPMTSLPGFTS 371
Query: 288 LNELYNVLPGELTIVTG-----------------VPNSGKSEWIDALICNINEHAGWKFV 330
L + + GELT++TG SGK+ ++ ++ E G +
Sbjct: 372 LIKGFRR--GELTVLTGENFGPDGSETCAATRESPTGSGKTTFLGQTSLDLVEQ-GVNVL 428
Query: 331 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
S E K +KLL+++++ A++G EE + L++ F
Sbjct: 429 WGSFEIKNTRLMKKLLQQYMRDVLPMADHGAEMTERQREEAMTSLSALADRF 480
>gi|355783033|gb|EHH64954.1| hypothetical protein EGM_18288 [Macaca fascicularis]
Length = 684
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 205/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPSLLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPHPLEALNRGF------NLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + +VID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVVIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|302565066|ref|NP_001181370.1| twinkle protein, mitochondrial [Macaca mulatta]
gi|383412383|gb|AFH29405.1| twinkle protein, mitochondrial isoform A [Macaca mulatta]
gi|387540958|gb|AFJ71106.1| twinkle protein, mitochondrial isoform A [Macaca mulatta]
Length = 684
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 205/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPSLLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALNRGF------NLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + +VID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYIYDICHVVIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|380019396|ref|XP_003693593.1| PREDICTED: twinkle protein, mitochondrial-like [Apis florea]
Length = 447
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 146/369 (39%), Gaps = 48/369 (13%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
Y++ ++IL D D A A+++ +RC+ +R D+ + Y
Sbjct: 102 YMESFKKLILWFDNDEVSWYTARHFAKKLNEKRCYLIR---PTDLQPRPKLAAEMNY--- 155
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP--- 296
+++NA+ + F+D +EI + W+ L +L
Sbjct: 156 -NFNSILKNAQPLWHKSIITFQDLKEEILIDLQNNDKVQ---GVKWKRYTTLNRILKGHR 211
Query: 297 -GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
GE TI+TG GK+ ++ ++ G + S E + R +L++ + P
Sbjct: 212 RGEFTILTGPTGCGKTTFMSEYSLDL-AMQGINTLWGSFEIRNVRLVRTMLQQMVGVPLS 270
Query: 356 E--ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
E N+ A FE+ + TF SIK V+D + A H +
Sbjct: 271 ENLENFDTYA-----NAFEKLPIYFM-TFH-------GQQSIKIVMDAVEHATYVHDIAH 317
Query: 414 LVIDPYNELDHQRPVSQT-ETEYVSQ------MLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+VID + Q + T +++YV + ++ + FA + CHV + HPR+ +
Sbjct: 318 VVID-----NVQFMMGMTNDSKYVDRFWKQDDIIAKFRNFATVYNCHVTMIIHPRKERS- 371
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
E I GSA + DN ++I NR +QV +N+ G +G L
Sbjct: 372 -SEELTTSSIFGSAKASQEADNVLIIQDNRLTSIRGKKYLQVA----KNRYSGDLGIMVL 426
Query: 527 SYNRVTGEY 535
+++ + Y
Sbjct: 427 DFDKSSLSY 435
>gi|386853269|ref|YP_006271282.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
gi|359840773|gb|AEV89214.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
Length = 427
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 109/279 (39%), Gaps = 37/279 (13%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEI+A + G G+ TG++ L+ L N L PG+L IV G P GKS N
Sbjct: 155 LDEIEAV-GASGGVMQGVPTGFQDLDRLLNGLHPGQLIIVAGRPGLGKSTASMDFARNAA 213
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G + S+E E +LL + P G+ +
Sbjct: 214 IRHGCASAIFSLEMSKIEMVMRLLSAEARVPL--------------HTLRSGQLSDDDWT 259
Query: 383 SLIRCEN---------DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQT 431
L RC D P++ + AKA L RH ++ LVID Y +L +++
Sbjct: 260 KLARCMGEISEAPIFVDDTPNMNLMEIRAKARRLKQRHNLKLLVID-YLQLMSSPKKTES 318
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ VS++ +K A+ C V V+ R + P L D+ S D I
Sbjct: 319 RQQEVSELSRGLKLLAKEVECPVIGVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVI 378
Query: 491 VIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTIGEA 524
++HR+ P AG D + V K RN TI A
Sbjct: 379 LLHRDDYYDKESPRAGEADFI---VAKHRNGPTDTITVA 414
>gi|402881238|ref|XP_003904182.1| PREDICTED: twinkle protein, mitochondrial [Papio anubis]
Length = 684
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 105/494 (21%), Positives = 190/494 (38%), Gaps = 69/494 (13%)
Query: 56 FAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYR----DFNKKF 104
F ++ +TL+R V R +V FP++ G KL+ K + + +
Sbjct: 180 FGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETT 237
Query: 105 WQEKDTEKVFYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVP 163
+GL I ++++++ E+D L++ ++ L +++P G + + +P
Sbjct: 238 IPRPSAYHNLFGLPLISRRDAEVVLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPSLLP 296
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
YL+Q RI+ D A+ AR++ +RC+ VR P
Sbjct: 297 ----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQ 339
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
+ N L ++ A + +FR +E+ S E
Sbjct: 340 PRPLEALNRGF------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGL 390
Query: 284 GWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 391 RWSRFPDLNRILKGHRKGELTVFTGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNV 449
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKW 397
AR +L + AE ++ ++ W L SI+
Sbjct: 450 RLARVMLTQF-------------AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRT 496
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
V+D + AV + + +VID + +S ++ + ++FA + CHV V
Sbjct: 497 VIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLV 556
Query: 458 AHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNK 516
HPR+ + + I GSA + DN ++I ++R GP R +QV +N+
Sbjct: 557 IHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNR 609
Query: 517 VVGTIGEAFLSYNR 530
G +G L +N+
Sbjct: 610 FDGDVGVFPLEFNK 623
>gi|332668584|ref|YP_004451591.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
gi|332337621|gb|AEE44204.1| replicative DNA helicase [Cellulomonas fimi ATCC 484]
Length = 459
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 126/307 (41%), Gaps = 31/307 (10%)
Query: 240 GALKEVVENA--ELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGISTGWRA 287
G + E+V NA E+Y + DY DEI+A HR G G+ TG+
Sbjct: 151 GDVDEIVNNAQAEVYAVTERRASEDYLPLGEIIGGTVDEIEAAGHRGEG-MIGVPTGFSD 209
Query: 288 LNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 346
L+ L N L PG++ +V P GKS ++ + + G V+ S+E E +LL
Sbjct: 210 LDRLTNGLHPGQMIVVAARPAIGKSTLGIDIVRSASIKHGMTSVVFSLEMSRNEITMRLL 269
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
+ + G +M +++ + A + +DS P++ + AK+
Sbjct: 270 SAEARVHLQKMRTG----QMGEDDWAKVAATMGKISEAPLFIDDS-PNMSLMEIRAKSRR 324
Query: 407 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
L RH ++ ++ID + + V + E VS+ +K A+ V ++ R
Sbjct: 325 LKQRHDLKLVIIDYLQLMTSGKRVESRQQE-VSEFSRALKLLAKELEVPVIAISQLNRGP 383
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 518
+ P + D+ S D I++HR P AG D + V K RN
Sbjct: 384 EQRTDKKPQMSDLRESGSIEQDADMVILLHREDAYEKESPRAGEAD---LIVAKHRNGPT 440
Query: 519 GTIGEAF 525
TI AF
Sbjct: 441 DTITVAF 447
>gi|317058120|ref|ZP_07922605.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313683796|gb|EFS20631.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 285
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 113/258 (43%), Gaps = 28/258 (10%)
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR-----KLLEK-- 348
PGE+ I TG P SGKS +++ L+ N+ E F +M+ + R+ K+L +
Sbjct: 7 PGEVIIFTGNPGSGKSTFVNNLMANLVEQGIKVF---TMQGEFRKEVFKTNICKILSRPG 63
Query: 349 ---HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
K P + YG +++ E+ ++ WL I + P+ +++ + A
Sbjct: 64 QIETFKHPLKDKLYG----KISYEQEKKINTWLKGK---ITIHTEQTPTKADLIETMEQA 116
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
++GV+ VID ++ S + E + ++ F + + + VAHP++
Sbjct: 117 YKKNGVKVFVIDNLMTINID---SADKYEAQKNLFIELQEFVKKYNVCLMIVAHPKKNIV 173
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID----RVQVCVRKVRNKVVGTI 521
+ + + ISG++ +N + + + R + E + V +++ G I
Sbjct: 174 KALDEVDDFIISGASEIVNLANAVVFLKRLSEDEVKKLQEQGFEASVGAILTKDRKYGDI 233
Query: 522 -GEAFLSYNRVTGEYMDI 538
+ F +Y TG ++DI
Sbjct: 234 RSKGFWNYEIKTGRFLDI 251
>gi|426252951|ref|XP_004020166.1| PREDICTED: LOW QUALITY PROTEIN: twinkle protein, mitochondrial
[Ovis aries]
Length = 690
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++I+ E+D L++ ++ L +++P G + + +P
Sbjct: 253 LFGLPLISRRDVEVILTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 302
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 303 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQ 354
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 355 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 405
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 406 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 465
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 466 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 506
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 507 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 566
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 567 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 619
Query: 521 IGEAFLSYNR 530
+G L +N+
Sbjct: 620 VGVFPLEFNK 629
>gi|294782201|ref|ZP_06747527.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
gi|294480842|gb|EFG28617.1| toprim domain-containing protein [Fusobacterium sp. 1_1_41FAA]
Length = 760
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 32/171 (18%)
Query: 75 RHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEM 133
R G + P +V KYR +KK W EK + +I ++IVEGE+
Sbjct: 108 RMGTHESMIIPVTNGETVVGIKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEI 167
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D LS EAG N VS+P GA T + + K +L + +II+ATD
Sbjct: 168 DLLSALEAGVENTVSLPSGA---------------TNIKCIKMQKNWLSKFQKIIIATDD 212
Query: 194 DPPGQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLG 238
D G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 213 DEAGV----EARKRIVHELRDLLIPLYKTYFYKK------KDVNEVLVKNG 253
>gi|386850774|ref|YP_006268787.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
gi|359838278|gb|AEV86719.1| replicative DNA helicase [Actinoplanes sp. SE50/110]
Length = 351
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 35/279 (12%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
F+ D+I++ R G G+ TG++ L+ L N L PG++ IV G P GKS +
Sbjct: 75 FQPVMDDIESAGSR-DGSMLGVPTGFKDLDRLLNGLQPGQVIIVAGRPGLGKS----TVG 129
Query: 319 CNINEHAGWKFVLCS----MENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--V 368
+I HA + + S +E E +LL + P G ++ RM +
Sbjct: 130 LDIARHAAIRAGMPSGFFTLEMSKVEMVTRLLSAEARVPLHVLRSGQLSDDDWARMARCM 189
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
+ ++ +T S+ E + A++ +H +R LVID Y +L
Sbjct: 190 GQIADAPIFVDDTPSMGMSE---------IRSKARSLKKKHNLRLLVID-YLQLMSSPKK 239
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFIN 484
+++ + VS++ +K ++ C + ++ P Q + + P L D+ S
Sbjct: 240 TESRQQEVSELSRGLKLLSKEIGCPIIVISQLNRGPEQRQD---KRPQLSDLRESGSIEQ 296
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 521
D I++HR+ D E+ V K RN TI
Sbjct: 297 DADVVILLHRDDYYDKESARAGEADFIVAKHRNGPTDTI 335
>gi|238801841|ref|YP_002922891.1| putative phage DNA primase/helicase [Escherichia phage wV8]
gi|216263054|gb|ACJ71922.1| putative phage DNA primase/helicase [Escherichia phage wV8]
Length = 661
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 196/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 123 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 182
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 183 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 236
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 237 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 295
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 296 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 348
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + +E+ E L H+ K
Sbjct: 349 GL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEELMEMLCAIHLSK 406
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E ++ A LS + ++ +L+ V +
Sbjct: 407 QISEIPY----DERDWDELKEAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 462
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 463 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 520
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 521 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 577
Query: 528 YNRVTG 533
YN TG
Sbjct: 578 YNPDTG 583
>gi|269975276|gb|ACZ55500.1| putative phage DNA primase/helicase [Staphylococcus phage SA1]
Length = 661
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 196/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 123 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 182
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 183 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 236
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 237 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 295
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 296 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 348
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + + +E+ E L H+ K
Sbjct: 349 GL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEELMEMLCAIHLSK 406
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E + A LS + ++ +L+ V +
Sbjct: 407 QISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 462
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 463 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 520
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 521 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 577
Query: 528 YNRVTG 533
YN TG
Sbjct: 578 YNPDTG 583
>gi|57107533|ref|XP_543974.1| PREDICTED: twinkle protein, mitochondrial isoform 2 [Canis lupus
familiaris]
Length = 684
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/425 (22%), Positives = 167/425 (39%), Gaps = 56/425 (13%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ +A L +++P G + + +P
Sbjct: 247 LFGLPLISRRDVEVVLTSRELDSLALNQATGLPTLALPRGI-ACLPPALLP--------- 296
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q RI+L D A+ AR++ +RC VR P + N
Sbjct: 297 -------YLEQFRRIVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLEALNR 348
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGIRWNRFPDLN 399
Query: 293 NVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+L G ELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQ 458
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAV 406
+ R+ E+ ++ W L SI+ V+D + AV
Sbjct: 459 F------------AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAV 505
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+ + +VID + +S ++ ++FA ++CHV V HPR+ +
Sbjct: 506 YVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD- 564
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAF 525
+ I GSA + DN ++I ++R GP R +QV +N+ G +G
Sbjct: 565 -DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFP 618
Query: 526 LSYNR 530
L +N+
Sbjct: 619 LEFNK 623
>gi|385651587|ref|ZP_10046140.1| replicative DNA helicase [Leucobacter chromiiresistens JG 31]
Length = 457
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 121/299 (40%), Gaps = 29/299 (9%)
Query: 246 VENAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALNELYNVL 295
V +E+Y + G DY +EI+ G G+ TG+ L+ + N
Sbjct: 156 VAQSEIYGVTGESQGEDYVPLHLAVDAALEEINKANGAADG-MLGVPTGFSELDAMTNGF 214
Query: 296 PG-ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354
G ++ I+ P GKS + N + HA V S+E E A +LL P
Sbjct: 215 AGGQMIIIAARPAMGKSTLAMDVARNASVHANAPTVFFSLEMGRAEIAMRLLAAEASIPM 274
Query: 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVR 412
G R +F++ A + +DS P++ V AK L+ HG+R
Sbjct: 275 QTLRKGALDNR----DFQKLAATQARVAEAPLYIDDS-PNLTLVEIRAKCRRLKQQHGLR 329
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
+VID Y +L S++ + VS+ +K ++ V ++ R + P
Sbjct: 330 MVVID-YLQLLSSGKKSESRQQEVSEFSRALKLLSKELDVPVIALSQLNRASEQRADKMP 388
Query: 472 NLYDISGSAHFINKCDNGIVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ D+ S D I++HR +RD P AG D + + K RN GT+ AF
Sbjct: 389 AISDLRESGSLEQDADMVILLHREAVGDRDSPRAGEADFI---LAKQRNGPTGTVTVAF 444
>gi|322795386|gb|EFZ18165.1| hypothetical protein SINV_00308 [Solenopsis invicta]
Length = 542
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 85/389 (21%), Positives = 146/389 (37%), Gaps = 56/389 (14%)
Query: 162 VPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR---- 217
+P Q+ Q L N + + ++IL D P A + A+++ +RC+ VR
Sbjct: 173 LPYNLQNLPQQLLPNFENF----KKLILWFGNDEPSWYTARQFAKKLNEKRCYFVRPIDT 228
Query: 218 WPK-KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI--DAYYHRT 274
P+ K D D +LM P K + FD++ D
Sbjct: 229 QPRPKLAADRGYDLKSILMNAQPIWHKSIT----------------IFDDLRQDVLCDLQ 272
Query: 275 SGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330
+ D W+ L +L G ELTI+TG SGK+ ++ ++ G +
Sbjct: 273 NIDRVQ-GVKWKRYPALNRILKGHRRGELTILTGPTGSGKTTFMSEYSLDL-AMQGVNTL 330
Query: 331 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCE 388
S E + AR +L++ AE E ++ ++ N +
Sbjct: 331 WGSFEIRNARLARTMLQQM-------------AEVSLEENLDKFNSYADAFNKLPIYFMT 377
Query: 389 NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFA 447
+IK V+D + A H + ++ID + ++ +++ + FA
Sbjct: 378 FHGQQNIKVVMDAVEHATYVHDIAHVIIDNVQFMMGMSEDITSDRFWKQDKIIAEFRNFA 437
Query: 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
H CHV V HPR+ N E I GSA + DN ++I R +Q
Sbjct: 438 TKHNCHVTLVIHPRKERN---EELTTLSIFGSAKASQEADNVLIIQDKRLTSIKGKKYLQ 494
Query: 508 VCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
V +N+ G +G L +++ Y+
Sbjct: 495 VA----KNRYSGDLGIMILEFDKTKLSYV 519
>gi|339326303|ref|YP_004685996.1| replicative DNA helicase DnaB [Cupriavidus necator N-1]
gi|338166460|gb|AEI77515.1| replicative DNA helicase DnaB [Cupriavidus necator N-1]
Length = 463
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLVIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|388841111|gb|AFK79160.1| replicative DNA helicase [uncultured bacterium F25-01]
Length = 449
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 120/280 (42%), Gaps = 28/280 (10%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
R+YFD I+ Y H+ G+ G+ +G+R L+++ L P +L I+ G P GK+ + +++
Sbjct: 168 LREYFDTIE-YLHQHKGEVVGVPSGFRDLDQITGGLHPSDLIIIAGRPGVGKTGFALSIV 226
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
N+ L S+E + ++LL E + + Y ++EFE
Sbjct: 227 RNVASRFQAPAALFSLEMSTEQLVQRLLCMEAAVDSQRVRSGY--------IDEFE---- 274
Query: 377 W--LSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
W +S F + I ++ + S + A+ H ++ +V+D Y +L R +
Sbjct: 275 WRRISEAFGVLSDAPIFIDDSAGISTAELRMKARRLKTEHDLKLIVVD-YLQLMQGRGL- 332
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ + VS++ +K A+ V ++ R + + P L D+ S D
Sbjct: 333 ENRVQEVSEISRALKVLARELDVPVIALSQLSRAVESRQDHRPMLSDLRESGSIEQDADI 392
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ IHR P+ + + + K RN VG I F
Sbjct: 393 VMFIHREELYKPDTDKKNIADIIIAKHRNGPVGQIPVRFF 432
>gi|294083963|ref|YP_003550720.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663535|gb|ADE38636.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322]
Length = 566
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 109/508 (21%), Positives = 202/508 (39%), Gaps = 74/508 (14%)
Query: 50 NELRAYFAERLISAETLRR-NRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEK 108
NE+++ R ++ ET R+ N +G V +A NG+ V K R +KKF
Sbjct: 77 NEIKS----RGLTEETCRKFNYTTAIHNGEPVQVATYLDENGRPVAQKVRTKSKKFTMLG 132
Query: 109 DTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVSKKNVPSE 165
D + YG + ++I EGE+D +++ + VS+ G S+V
Sbjct: 133 DAKAATLYGSHLYKTGKKLVICEGEIDAMTVSQVQGHKWATVSLTQGCSSAV-------- 184
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVD 225
+ + N ++ + +IL D D GQ A+E A + + P
Sbjct: 185 ------KTMKNNWEFITKFEEVILMFDMDSVGQKAAQEAAATLPVGKAKIAYLP------ 232
Query: 226 HFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGW 285
KDANE L+ + + + A Y G+ DY D I +S ++ +
Sbjct: 233 -CKDANECLLQGKSAEIIQAIYQAREYRPDGIVVATDYRDVISEDDQASS-----VTYPY 286
Query: 286 RALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 344
LNE++ L E+ +V +GK+ ++ + ++++ G + L +E +
Sbjct: 287 SNLNEIFRGLRLKEILLVAAGSGTGKTTFVKEIAYHLHQQ-GERVGLIMLEESNKRSLLS 345
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFE----QGKA-------WLSNTFSLIRCENDSLP 393
L+ H+ K + + +E F+ +G+ W S+ LI C+
Sbjct: 346 LVGTHMNKNVL-VDRSEVTDDEIIEAFDDLFGEGRNPVYLYDHWGSSDVDLI-CQR---- 399
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ---TETEYVSQMLTMVKRFAQHH 450
I ++ A VL G++ + +D + L Q S +E + +T ++ Q
Sbjct: 400 -ITYM-----AKVL--GIKWVFLDHISMLCTQMGGSSGFGSERLIIDYAMTKLRTMVQEL 451
Query: 451 ACHVWFVAHPRQL-----HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR 505
+ V+H ++ H G+P L + GS+ D I ++ + D I
Sbjct: 452 DIGLILVSHVKRPDGNSGHESGGQPVRLNHLRGSSSLGQLSDGVIALNVDSDEPDSDIRH 511
Query: 506 VQVCVRKVRNKVVGTIG-EAFLSYNRVT 532
+ + ++N+ G G L Y+R T
Sbjct: 512 LHI----LKNRFCGATGYSGTLRYDRDT 535
>gi|440912429|gb|ELR61999.1| Twinkle protein, mitochondrial [Bos grunniens mutus]
Length = 683
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 246 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 295
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 296 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDKQPSPLEALNQ 347
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 348 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 398
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 399 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 458
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 459 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 499
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 500 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 559
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 560 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 612
Query: 521 IGEAFLSYNR 530
+G L +N+
Sbjct: 613 VGVFPLEFNK 622
>gi|402760907|gb|AFQ96134.1| putative phage DNA primase/helicase [Enterobacteriaphage UAB_Phi87]
Length = 661
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 196/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 123 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 182
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 183 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 236
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 237 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 295
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 296 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 348
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + + +E+ E L H+ K
Sbjct: 349 GL--GEITTIAAPSSVGKSAYTREMIYSAWKETDYNIGVIPVEDTYEELMEMLCAIHLSK 406
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E + A LS + ++ +L+ V +
Sbjct: 407 QISEIPY----DERDWDELKVAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 462
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 463 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 520
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 521 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 577
Query: 528 YNRVTG 533
YN TG
Sbjct: 578 YNPDTG 583
>gi|113868251|ref|YP_726740.1| replicative DNA helicase [Ralstonia eutropha H16]
gi|113527027|emb|CAJ93372.1| Replicative DNA helicase [Ralstonia eutropha H16]
Length = 463
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDTQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ A D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNADSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|327267466|ref|XP_003218523.1| PREDICTED: twinkle protein, mitochondrial-like [Anolis
carolinensis]
Length = 666
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 111/503 (22%), Positives = 192/503 (38%), Gaps = 71/503 (14%)
Query: 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--RNGKLVNCKYRDFNKKFWQE 107
E +A F IS TL+R V R +V FP++ R L K ++
Sbjct: 158 QEAKAKFGISSISNATLKRFGVRYLRTAQALV--FPWFSPRGTSLKGLKLLGVERQGETA 215
Query: 108 KDTEKVF---------YGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
E +GL I ++++++ E+D L++ +A L +++P G S +
Sbjct: 216 NYVENTLPRPSAYHNLFGLPLIGRRDTEVVLTGRELDTLALHQATGLPILALPRGI-SCL 274
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+P YL+Q RI L D A+ AR++ +RC V+
Sbjct: 275 PPGLLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLNPKRCSLVQ 318
Query: 218 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 277
P + + L L +++ +A + +FR +E+ +
Sbjct: 319 -PSDQQLQPLEAFTRGL------NLTKILRSALPAGHKAIISFRQLREEV---LGELANV 368
Query: 278 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333
E W EL +L G ELT+ TG SGK+ +I ++ G + S
Sbjct: 369 EQVAGVKWARFPELNKLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCMQ-GVNTLWGS 427
Query: 334 ME-NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCEND 390
E N VR + K G E E+ ++ W L
Sbjct: 428 FEINNVR----------LAKIMLTQFAMGRLE----EQLDKFDEWADRFEDLPLYFMTFH 473
Query: 391 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 450
+IK V+D K AV + + ++ID + Q ++ ++ ++FA +
Sbjct: 474 GHQNIKTVMDTMKHAVYMYDITHIIIDNLQFMMGQEQLTVDRLAVQDYIVGTFRKFATEN 533
Query: 451 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVC 509
+CHV V HPR+ I GSA + DN ++I ++R GP R +Q+
Sbjct: 534 SCHVTLVIHPRKEDE--ERELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQIS 590
Query: 510 VRKVRNKVVGTIGEAFLSYNRVT 532
+N+ G +G L +++ +
Sbjct: 591 ----KNRFDGDVGIFPLEFSKTS 609
>gi|350592990|ref|XP_003483588.1| PREDICTED: twinkle protein, mitochondrial-like [Sus scrofa]
Length = 571
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 97/418 (23%), Positives = 166/418 (39%), Gaps = 65/418 (15%)
Query: 125 DIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA 184
++++ E+D L++ ++ L +++P G + + +P YL+Q
Sbjct: 146 ELVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP----------------YLEQF 188
Query: 185 SRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244
R++L D A+ AR++ +RC VR P + N+ L L
Sbjct: 189 RRVVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQGL------NLSR 241
Query: 245 VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELT 300
++ A + +FR +E+ S E W +L +L G ELT
Sbjct: 242 ILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLNRLLKGHRKGELT 298
Query: 301 IVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EHARKLLEKHIKKP 353
+ TG SGK+ +I AL +C + W S R + A LE+ + K
Sbjct: 299 VFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQFAVGRLEEQLDK- 357
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
Y A+R FE L F + SI+ V+D + AV + +
Sbjct: 358 -----YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDTMQHAVYVYDICH 399
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL 473
+VID + +S ++ ++FA +CHV V HPR+ + +
Sbjct: 400 VVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPRKEDD--DKELQT 457
Query: 474 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
I GSA + DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 458 ASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 510
>gi|331700353|ref|YP_004336592.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
gi|326955042|gb|AEA28739.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190]
Length = 469
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 138/326 (42%), Gaps = 36/326 (11%)
Query: 222 NDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGI 281
+DVD D + +Y + E + + P+ L + DEIDA R G G+
Sbjct: 160 SDVDEVVDRAQAAIY----EVTERTTSEDYTPLEELL--QPTMDEIDAIASR-GGVALGV 212
Query: 282 STGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKV 338
TG+ L+ + N L PG++ +V P GKS +D A C++ G + S+E
Sbjct: 213 PTGFADLDAVTNGLHPGQMVVVAARPGLGKSTLGLDFARSCSVRH--GMTSAVFSLEMSK 270
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 398
E +LL + + G RM+ E++ + +S +DS P++ +
Sbjct: 271 SEIVMRLLSAEARIRLADMRAG----RMSDEDWTRMARRMSEISEAPLFIDDS-PNLTLM 325
Query: 399 LDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
AKA L R+ ++ +++D + R V + E VS+ +K A+ V
Sbjct: 326 EIRAKARRLKQRNDLKLIILDYLQLMTSGRKVESRQQE-VSEFSRQIKLLAKELEVPVVA 384
Query: 457 VAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQ 507
++ P Q ++ + P L D+ S D I++HR DP AG D
Sbjct: 385 MSQLNRGPEQRND---KRPMLSDLRESGSIEQDADMVILLHRPDAFERDDPRAGEAD--- 438
Query: 508 VCVRKVRNKVVGTIGEAF-LSYNRVT 532
+ + K RN TI A L Y+R T
Sbjct: 439 LILAKHRNGPTSTITVAHQLHYSRFT 464
>gi|359797792|ref|ZP_09300372.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
gi|359364260|gb|EHK65977.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
Length = 462
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 43/289 (14%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALI 318
R+ ++++A R G G++TG+ L+E G+L I+ G P+ GK+ + +
Sbjct: 164 LRNVLEQLEARGEREGGVS-GLATGFADLDEKTSGCQDGDLIIIAGRPSMGKTTFAINIA 222
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAW 377
N+ E G V+ S+E A +L E+ I A YG +R+ + QG W
Sbjct: 223 ENVTEDDGVALVV-SLEMA----AAQLAERSI------ARYGAIDTQRLRTGKLHQGD-W 270
Query: 378 LSNTFSLIRCENDSL-----PSIKWVLDL---AKAAVLRHGVRGLVIDPYNELDHQRPVS 429
T ++ + EN L PS+ V + A+ R G L++ Y +L +
Sbjct: 271 PRLTHAIQQLENQRLIIADDPSLANVARIRLAARKVKQRQGRLDLIVVDYLQL--MQGEG 328
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINK 485
T E + + +K A+ C + ++ QL V E PN L D+ S
Sbjct: 329 STRNEDLGGITRAIKLLARELGCPIIVLS---QLSRKVEERPNKRPILSDLRESGAIEQD 385
Query: 486 CDNGIVIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
D ++++R+ P G ++ +RK R +G +GE FL++
Sbjct: 386 ADVVMMVYRDDYYHEDSPYKG---LAEILIRKQR---MGPLGEVFLTFQ 428
>gi|148540314|ref|NP_001091933.1| twinkle protein, mitochondrial [Bos taurus]
gi|146327380|gb|AAI40488.1| C26H10ORF2 protein [Bos taurus]
gi|296472706|tpg|DAA14821.1| TPA: twinkle [Bos taurus]
Length = 683
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 246 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 295
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q R++L D A+ AR++ +RC VR P + N+
Sbjct: 296 -------YLEQFRRVVLWLGNDLRSWEAAKLFARKLNPKRCSLVR-PGDKQPSPLEALNQ 347
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 348 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 398
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 399 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 458
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 459 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 499
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + + +VID + +S ++ ++FA +CHV V HPR
Sbjct: 500 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPR 559
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 560 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 612
Query: 521 IGEAFLSYNR 530
+G L +N+
Sbjct: 613 VGVFPLEFNK 622
>gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herbaspirillum seropedicae SmR1]
gi|300074179|gb|ADJ63578.1| replicative DNA helicase protein [Herbaspirillum seropedicae SmR1]
Length = 478
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 40/284 (14%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R +S D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 193 ERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 248
Query: 323 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH +G + SME + A ++L GS R+ G+
Sbjct: 249 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 294
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 295 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 354
Query: 428 VSQTETEY--VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 355 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 414
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 415 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 458
>gi|409405889|ref|ZP_11254351.1| replicative DNA helicase [Herbaspirillum sp. GW103]
gi|386434438|gb|EIJ47263.1| replicative DNA helicase [Herbaspirillum sp. GW103]
Length = 481
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 122/284 (42%), Gaps = 40/284 (14%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R +S D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 196 ERIDELYNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 251
Query: 323 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH +G + SME + A ++L GS R+ G+
Sbjct: 252 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 297
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 298 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 357
Query: 428 VSQTETEY--VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 358 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 417
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 418 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 461
>gi|355562713|gb|EHH19307.1| hypothetical protein EGK_19987 [Macaca mulatta]
Length = 684
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 204/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAVPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDI-EGESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLITRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPSLLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC VR P + N L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCCLVR-PGDQQPRPLEALNRGF------NLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + +VID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYIYDICHVVIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIVGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>gi|289765792|ref|ZP_06525170.1| predicted protein [Fusobacterium sp. D11]
gi|289717347|gb|EFD81359.1| predicted protein [Fusobacterium sp. D11]
Length = 652
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 78 HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-EKVFYGLDDIEGESDIIIVEGEMDKL 136
HE ++ P +V KYR +KK W EK + +I ++IVEGE+D L
Sbjct: 4 HESMM-IPVTNGETVVGVKYRSLDKKLWSEKGSCLDYLLNWQNITDFDYLVIVEGEIDLL 62
Query: 137 SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
S EAG N VS+P GA T + + K +L + +II+ATD D
Sbjct: 63 SALEAGVENTVSLPSGA---------------TNIKCIKTQKNWLSKFQKIIIATDDDEA 107
Query: 197 GQALAEELARRVGRER------CWRVRWPKKNDVDHFKDANEVLMYLG 238
G E +R+ E ++ + KK KD NEVL+ G
Sbjct: 108 GI----EARKRIVYELRDLLIPLYKTYFYKK------KDINEVLVKSG 145
>gi|431838895|gb|ELK00824.1| Twinkle protein, mitochondrial [Pteropus alecto]
Length = 656
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 204/524 (38%), Gaps = 82/524 (15%)
Query: 35 IREITEDSLEL----EPLGNEL-RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN 89
IR I + ++ L EP +L R F ++ +TL+R V R +V FP++
Sbjct: 133 IRRIWDRAIPLWELPEPKEAQLARVMFGLTKVTDDTLKRFSVRYLRPARSLV--FPWFSP 190
Query: 90 GKLVNCKYRDFNKKFWQEKDTEKVFY---------------GLDDI-EGESDIIIVEGEM 133
G L + R K E + V Y GL I + ++++ E+
Sbjct: 191 GSL---RLRGL-KLLQAEGQGDGVHYVETTVPRPGAYHNLFGLPLINRRDVEVVLTSREL 246
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D L++ ++ L +++P G + + +P YL+Q RI+L
Sbjct: 247 DSLALNQSTGLPTLALPRGI-ACLPPALLP----------------YLEQFRRIVLWLGD 289
Query: 194 DPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
D A+ AR++ +RC VR P + N L L ++ +A
Sbjct: 290 DLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLEALNRGL------NLSRILRSALPAW 342
Query: 254 IMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSG 309
+ +FR +E+ S E W +L +L G ELT+ TG SG
Sbjct: 343 HKSIVSFRQLREEV---LGELSNVEQVAGVRWSRFPDLSRLLKGHRKGELTVFTGPTGSG 399
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
K+ +I ++ G + S E AR +L + + ER+ E
Sbjct: 400 KTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARIMLTQF------------AVERLE-E 445
Query: 370 EFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
+ ++ W L +I+ V+D + AV + + +VID +
Sbjct: 446 QLDKYDEWADRFEDLPLYFMTFHGQQNIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQ 505
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487
+S ++ ++FA +CHV V HPR+ + + I GSA + D
Sbjct: 506 LSTDRIAAQDYIVGAFRKFATDSSCHVTLVIHPRKEDD--DKELQTASIFGSAKASQEAD 563
Query: 488 NGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
N ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 564 N-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 602
>gi|171463207|ref|YP_001797320.1| replicative DNA helicase [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192745|gb|ACB43706.1| replicative DNA helicase [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 479
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 114/274 (41%), Gaps = 35/274 (12%)
Query: 267 IDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 324
ID Y+R G + GI+TG+ L++ + L G+L IV G P+ GK+ + + N+
Sbjct: 193 IDELYNRQGGSDITGIATGFLDLDKQTSGLQKGDLVIVAGRPSMGKTAFALNIAENVALA 252
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK--------- 375
G V+ SME + A +LL GS R+ GK
Sbjct: 253 EGLPVVVFSMEMSGEQLAARLL--------------GSVGRVDQGRMRTGKLQDDEWPRV 298
Query: 376 ----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
A LSNT LI E SL S++ + A G GLV+ Y +L
Sbjct: 299 TDAIARLSNTQILID-ETGSLSSLELRARARRIARNFGGTLGLVVIDYLQLMSGSGSENR 357
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
TE +S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 358 ATE-ISEISRSLKSLAKELQCPVVALSQLNRGLEQRPNKRPIMSDLRESGAIEQDADLIM 416
Query: 491 VIHRNR--DPEAGPIDRV-QVCVRKVRNKVVGTI 521
I+R+ P+ V ++ + K RN +GT+
Sbjct: 417 FIYRDEVYHPDTTTDKGVAEIIIGKQRNGPIGTV 450
>gi|158267603|ref|NP_944967.2| Putative phage DNA primase/helicase [Salmonella phage FelixO1]
gi|347466985|gb|AEO97518.1| DNA primase/helicase [Salmonella phage FO1a]
gi|408386478|gb|AFU63495.1| DNA primase/helicase [Salmonella phage SBA-1781]
gi|408386514|gb|AFU63526.1| DNA primase/helicase [Salmonella phage SPT-1]
Length = 661
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 195/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 123 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 182
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 183 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 236
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 237 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 295
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 296 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 348
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + +E+ E L H+ K
Sbjct: 349 GL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEELMEMLCAIHLSK 406
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E + A LS + ++ +L+ V +
Sbjct: 407 QISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 462
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 463 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 520
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 521 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 577
Query: 528 YNRVTG 533
YN TG
Sbjct: 578 YNPDTG 583
>gi|301756128|ref|XP_002913911.1| PREDICTED: twinkle protein, mitochondrial-like [Ailuropoda
melanoleuca]
gi|281352044|gb|EFB27628.1| hypothetical protein PANDA_001746 [Ailuropoda melanoleuca]
Length = 684
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 94/425 (22%), Positives = 167/425 (39%), Gaps = 56/425 (13%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 247 LFGLPLISRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 296
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q RI+L D A+ AR++ +RC VR P + N
Sbjct: 297 -------YLEQFRRIVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLEALNR 348
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGIRWNRFPDLN 399
Query: 293 NVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+L G ELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQ 458
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAV 406
+ R+ E+ ++ W L SI+ V+D + AV
Sbjct: 459 F------------AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAV 505
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+ + +VID + +S ++ ++FA ++CHV V HPR+ +
Sbjct: 506 YVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD- 564
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAF 525
+ I GSA + DN ++I ++R GP R +QV +N+ G +G
Sbjct: 565 -DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGEVGVFP 618
Query: 526 LSYNR 530
L +N+
Sbjct: 619 LEFNK 623
>gi|33340470|gb|AAQ14821.1| putative DNA primase/helicase [Salmonella phage FelixO1]
Length = 663
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 107/486 (22%), Positives = 195/486 (40%), Gaps = 42/486 (8%)
Query: 65 TLRRNRVMQKRH-GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGE 123
T +RN + H G+ V +P + + K +DF+ K +F EG
Sbjct: 125 TYKRNEDGKLEHVGYRVRHRYPEDHPKEHLRGKLKDFSGGVGDIKGELAMFGSWIAPEGG 184
Query: 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAP-SSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+ + I EGEM+ + A ++ +++ D + + +VPS + + + Y+
Sbjct: 185 NRLFIWEGEMECAT---AIYMTSLAIKDKSRRKNYCHVSVPS---GANIKSIKDNYQYIT 238
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK-NDVDH-----FKDANEVLMY 236
I L D D G +E A + E+ ++P+ D++ +K+ + VL
Sbjct: 239 SFDEIYLCFDNDEAGAKATKEAAGILPIEKVRLFQYPEGVKDLNEWWTKFYKEKDTVLE- 297
Query: 237 LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL----Y 292
K+ + NA Y G+ NF D F+ A +R + LN L Y
Sbjct: 298 ----GFKQRIYNAPRYCPAGIKNFADGFE---AMKNRGQIPLIPFPESFGDLNRLTYGGY 350
Query: 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+ GE+T + + GKS + +I + + + +E+ E L H+ K
Sbjct: 351 GL--GEITTLAAPSSVGKSAYTREMIYTAWKDTDYNIGVIPVEDTYEELMEMLCAIHLSK 408
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
E Y + +E + A LS + ++ +L+ V +
Sbjct: 409 QISEIPY----DERDWDELKGAHAELSKGRRIHIVDHQGAIDQDNLLEFVDYLVNSLDCK 464
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQLHNWVGEP 470
+++DP L R + E E +S++L KR +AQ + CHV A ++ ++ G+
Sbjct: 465 IIILDPIT-LALSRSDTD-EEEVLSELLRRCKRYQYAQVNVCHVRKSAGGQKANSEGGDI 522
Query: 471 PNLYDISGSAHFINKCDNGIVIHRNR---DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DI GS + N I++ RN+ DP + ++++ + K G G +
Sbjct: 523 SE-EDIKGSGAYFQISMNNILLMRNKVDPDPVKKNLTKIKLTKCRRHGKSTGIAGHTW-- 579
Query: 528 YNRVTG 533
YN TG
Sbjct: 580 YNPDTG 585
>gi|395502295|ref|XP_003755517.1| PREDICTED: twinkle protein, mitochondrial [Sarcophilus harrisii]
Length = 676
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 174/426 (40%), Gaps = 58/426 (13%)
Query: 114 FYGLDDIEGESDI--IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKY 171
+GL I G+ D+ ++ E+D L++ +A L +++P G + + +P
Sbjct: 250 LFGLPLI-GQRDVEMVLTSRELDSLALHQATGLPTLALPRGL-ACLPPTLLP-------- 299
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231
YL+Q RI+L D A+ AR++ +RC VR P + +
Sbjct: 300 --------YLEQFRRIVLWLGDDLRAWEAAKLFARKLNPKRCSLVR-PGEQYPRPLEALT 350
Query: 232 EVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL 291
+ L L++++ +A + +FR +E+ S E W +L
Sbjct: 351 KGL------NLQKILRSALPAGHKSIVSFRQLREEV---LGELSNVEQVAGVRWGRFPDL 401
Query: 292 YNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLE 347
+L G ELT+ TG SGK+ +I ++ G + S E AR +L
Sbjct: 402 NRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARIMLT 460
Query: 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAA 405
+ G ER+ EE+++ W +L SI+ V+D + A
Sbjct: 461 QFA--------MGRLEERL--EEYDE---WADRFEDLALYFMTFHGQQSIRTVMDTMQHA 507
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHN 465
V + + ++ID + Q +S ++ ++FA + CHV V HPR+
Sbjct: 508 VYVYDICHVIIDNLQFMMGQEQLSSDRIAAQDYIVGAFRKFATDNNCHVTLVIHPRKEDG 567
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEA 524
+ I GSA + DN ++I +++ GP R +QV +N+ G +G
Sbjct: 568 --DKELQTASIFGSAKASQEADN-VLILQDKKLVTGPGKRYLQVS----KNRFDGDVGIF 620
Query: 525 FLSYNR 530
L +N+
Sbjct: 621 PLEFNK 626
>gi|384495121|gb|EIE85612.1| hypothetical protein RO3G_10322 [Rhizopus delemar RA 99-880]
Length = 340
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 78/189 (41%), Gaps = 23/189 (12%)
Query: 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLP----------SIKWVLDLAKA 404
FE A++M + E+ A F + E + LP IK VLD+ K
Sbjct: 136 FEILNKRLAKKMLSQFAEKDLAQFPEEFDRVADEFEKLPMYFLKFHSSTPIKKVLDVCKE 195
Query: 405 AVLRHGVRGLVIDPYN-ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQL 463
AV +GV+ +VID L Q + E + ++ FA H+ V HPR+
Sbjct: 196 AVDVYGVQHIVIDNLQFMLSQQARAGLDKWELQEDAIAKIRSFATSEDVHITLVVHPRK- 254
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
GE ++ I GSA + DN I++ R + A I +N+ GT+G
Sbjct: 255 --ETGEELDINSIFGSAKVTQEADNVIILQRRFNTRAIDIK---------KNRYDGTLGV 303
Query: 524 AFLSYNRVT 532
+N+ T
Sbjct: 304 IKYKFNKNT 312
>gi|430809616|ref|ZP_19436731.1| replicative DNA helicase [Cupriavidus sp. HMR-1]
gi|429497977|gb|EKZ96494.1| replicative DNA helicase [Cupriavidus sp. HMR-1]
Length = 463
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTSDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGVQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T S+ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHSIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|445498524|ref|ZP_21465379.1| replicative DNA helicase DnaB [Janthinobacterium sp. HH01]
gi|444788519|gb|ELX10067.1| replicative DNA helicase DnaB [Janthinobacterium sp. HH01]
Length = 461
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 30/274 (10%)
Query: 264 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 321
+ ID Y R S E G+ TGW L+ + + L PG++ +V G P+ GK+ + + N+
Sbjct: 178 VERIDELYSRESQSEITGVPTGWIDLDRMTSGLQPGDMVVVAGRPSMGKTAFSMNIAENV 237
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W 377
G + SME + A ++L GS ++ GK W
Sbjct: 238 AVEEGLPVAVFSMEMGGVQLAMRML--------------GSVGQLDQHRLRTGKLNDEDW 283
Query: 378 LSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQ 430
T ++ + + D P++ + A+A L G GL++ Y +L
Sbjct: 284 PRLTHAIQKMNDAQVYIDETPALNPIEMRARARRLSRQCGKLGLIVVDYLQLMTGSTQGD 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
+S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 344 NRASEISEISRSLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVI 403
Query: 490 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 521
I ++R+ +P++ ++ + K RN +G++
Sbjct: 404 IFLYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSV 437
>gi|452124394|ref|ZP_21936978.1| replicative DNA helicase [Bordetella holmesii F627]
gi|452127788|ref|ZP_21940368.1| replicative DNA helicase [Bordetella holmesii H558]
gi|451923624|gb|EMD73765.1| replicative DNA helicase [Bordetella holmesii F627]
gi|451926657|gb|EMD76790.1| replicative DNA helicase [Bordetella holmesii H558]
Length = 457
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 115/277 (41%), Gaps = 28/277 (10%)
Query: 264 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 321
+ ID YHR S D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRDSESDVTGVPTGFTDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 322 NEHA----GWKFVLCSMENKVREHARK------LLEKHIKKPFFEANYGGSAERMTVEEF 371
EH G + SME + A + +L++H + V+
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRMLGSVGMLDQHRMRTGKLVAEDWPRVTHAVQLM 293
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
++ + ++ T +L E V A+ + G GL+I Y +L +
Sbjct: 294 QEAQVYIDETPALSAME---------VRARARRLARQCGQLGLIIIDYIQLMSASSAGEN 344
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
VS++ +K A+ C + ++ R L + P + D+ S D +
Sbjct: 345 RATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 404
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 405 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|407715969|ref|YP_006837249.1| Replicative helicase dnaB2 [Cycloclasticus sp. P1]
gi|407256305|gb|AFT66746.1| Replicative helicase dnaB2 [Cycloclasticus sp. P1]
Length = 465
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 24/264 (9%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G STG+ L+E+ + L P +L IV G P+ GK+ + L NI +G + SME
Sbjct: 199 GASTGFSDLDEMTSGLQPADLIIVAGRPSMGKTSFAMNLAENIGIQSGLPIAVFSMEMPG 258
Query: 339 REHARKLLEKHIKKPFFEANYGGSAE----RM--TVEEFEQGKAWLSNTFSLIRCENDSL 392
A +++ + + G + RM ++ + K ++ +T +L E
Sbjct: 259 DSLAMRMMSSLGRIDQHKVRTGQLDDDEWPRMQSSINLLAEAKIFIDDTGALSPIE---- 314
Query: 393 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
V A+ + HG GL++ Y +L S++ +S + +K A+
Sbjct: 315 -----VRARARRLMKEHGQLGLIVLDYLQLMQSPSKSESRVAEISDISRSLKALAKELNV 369
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 507
V ++ R L + P + D+ S D I I+R N D +A + +
Sbjct: 370 PVIALSQLNRNLEQRPNKRPVMSDLRESGSIEQDADVIIFIYRDEVYNEDSDAKGV--AE 427
Query: 508 VCVRKVRNKVVGTIGEAFL-SYNR 530
+ + K RN +GT FL Y R
Sbjct: 428 IIIGKQRNGPIGTCRLTFLGQYTR 451
>gi|291404668|ref|XP_002718708.1| PREDICTED: twinkle-like [Oryctolagus cuniculus]
Length = 684
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 170/430 (39%), Gaps = 66/430 (15%)
Query: 114 FYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ +A L +++P G + + +P
Sbjct: 247 LFGLPLITRRDVEVVLTSRELDSLALNQATGLPTLTLPRGT-ACLPPALLP--------- 296
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q R++ D A+ AR++ +RC VR P N+
Sbjct: 297 -------YLEQFRRVVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPRPLDALNQ 348
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L ++ A + +FR +E+ S E W +L
Sbjct: 349 GL------NLSRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGVRWSRFPDLN 399
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 459
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE+ + K Y A+R FE L F + SI+ V+D
Sbjct: 460 AVGRLEEQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 500
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + V +VID + +S ++ ++FA ++CHV V HPR
Sbjct: 501 MQHAVYVYDVCHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPR 560
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 561 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 613
Query: 521 IGEAFLSYNR 530
+G L +N+
Sbjct: 614 VGVFPLEFNK 623
>gi|94310913|ref|YP_584123.1| replicative DNA helicase [Cupriavidus metallidurans CH34]
gi|93354765|gb|ABF08854.1| replicative DNA helicase [Cupriavidus metallidurans CH34]
Length = 463
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGVQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T S+ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHSIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|187478660|ref|YP_786684.1| replicative DNA helicase [Bordetella avium 197N]
gi|115423246|emb|CAJ49779.1| replicative DNA helicase [Bordetella avium 197N]
Length = 457
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/282 (23%), Positives = 114/282 (40%), Gaps = 38/282 (13%)
Query: 264 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 321
+ ID YHR S D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHRESESDVTGVPTGFTDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 322 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 376
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLI 279
Query: 377 ---WLSNTFSLIRCEN-----DSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQR 426
W T ++ + D P++ V A+ + G GL+I Y +L
Sbjct: 280 AEDWPRVTHAVQLMQEAQVYIDETPALSAMEVRARARRLARQCGQLGLIIIDYIQLMSAS 339
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 SAGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 400 ADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|346465805|gb|AEO32747.1| hypothetical protein [Amblyomma maculatum]
Length = 540
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 135/347 (38%), Gaps = 62/347 (17%)
Query: 204 LARRVGRERCWRVRWPKKN------DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
AR++G +RC+ +R PK+ +VL P + + + L +
Sbjct: 202 FARKLGEKRCYYIR-PKEGYPLAALQAKPRSQLPDVLKRCQPVSHRAITTFHSLRAAVA- 259
Query: 258 FNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIVTGVPNSGKSEW 313
D +D + + T W+ L +L GELT+ TG SGK+ +
Sbjct: 260 ----DLLQNMDTF----------VGTRWQRFPGLVRLLKGFRTGELTVFTGPTGSGKTTF 305
Query: 314 -----IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 368
+D + +N G S E + E K++ K E N +
Sbjct: 306 MCEYSLDLCMQGVNTLWG------SFEIQ-NEKLAKIMLTQFSKISLENN---------M 349
Query: 369 EEFEQGKAWLSNTFSLIRCENDSL---PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425
EEF+ +W ++ F L+ + ++K V+D AV H ++ +V+D +
Sbjct: 350 EEFD---SW-ADKFELLPLYFMTFHGEETMKNVMDAMSHAVYVHDIQHVVVDNVQFMMGV 405
Query: 426 RPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
S + Q ++ +RFA H CHV V HPR+ + E + I G A
Sbjct: 406 GMDSSNVDRFWRQDLLVAAFRRFATQHNCHVTLVMHPRKERD--AEELSTSSIFGGAKAS 463
Query: 484 NKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN +++ R +QV +N+ G IG L +N+
Sbjct: 464 QEADNVLILQDRRLSSQQGCKHLQV----TKNRFDGDIGSVPLEFNK 506
>gi|73541690|ref|YP_296210.1| replicative DNA helicase [Ralstonia eutropha JMP134]
gi|72119103|gb|AAZ61366.1| primary replicative DNA helicase [Ralstonia eutropha JMP134]
Length = 463
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + PG+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSTTDVTGVPTGFIDLDKMTSGMQPGDLVIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ D+ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNQDSQDKGTAEIIIGKQRNGPIGTVRLTFL 443
>gi|195997685|ref|XP_002108711.1| hypothetical protein TRIADDRAFT_18685 [Trichoplax adhaerens]
gi|190589487|gb|EDV29509.1| hypothetical protein TRIADDRAFT_18685, partial [Trichoplax
adhaerens]
Length = 438
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/382 (21%), Positives = 149/382 (39%), Gaps = 55/382 (14%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDG---APSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+++ E D +++ + + VS+P+G P + VP +
Sbjct: 1 VVLTANEFDAMAINQGTGVPAVSLPNGNVLLPVDL----VP----------------LFE 40
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA- 241
Q RI + + + + A ++ RERC+ + K + F A E L G
Sbjct: 41 QFKRITIWLGNSVKDKRMELQFANKLQRERCYFLPSTLKGE---FPTALEAL---NRGVD 94
Query: 242 LKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG---- 297
LK+V+ +A + + F D ++ Y+ + E I W+ EL +L G
Sbjct: 95 LKKVLNSAHVVAHNRIVTFTDLRQDV---YNEFANREQIIGVPWQRHPELTKILKGHRRG 151
Query: 298 ELTIVTGVPNSGKSEWIDAL---ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354
E+TI TG SGK+ +I + +CN G + S E + + ++ + F
Sbjct: 152 EMTIFTGPTGSGKTTFISEISIDLCN----QGVNTLFGSFEIRNVRIMKTMMRQFSGINF 207
Query: 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 414
E N G E+ + FE+ + + + IK V+ + A + +
Sbjct: 208 EEKNKLGKFEKYATQ-FEKLPLYFMHFYGS--------QDIKRVIQTMEHAAYIFDIEHI 258
Query: 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 474
++D L + + L++ +RFA HV V HPR+ ++ +
Sbjct: 259 IVDNLQFLLNVDTRDDFAFRQQNLALSLFRRFASEKNVHVTLVVHPRKEND--DTDLQMA 316
Query: 475 DISGSAHFINKCDNGIVIHRNR 496
I GSA + DN +++ R
Sbjct: 317 SIGGSAKASQEADNVMILQNIR 338
>gi|148274143|ref|YP_001223704.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170783383|ref|YP_001711717.1| replicative DNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
gi|147832073|emb|CAN03046.1| putative replicative DNA helicase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169157953|emb|CAQ03163.1| replicative DNA helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 459
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/318 (25%), Positives = 128/318 (40%), Gaps = 45/318 (14%)
Query: 236 YLGPGALKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGIST 283
Y G + ++V NA E+Y + G DY DEI+A + G G+ T
Sbjct: 145 YASEGEVVDLVNNAQAEIYGVTGGVEAEDYVPLTDAVTVAIDEIEAAKGK-DGQMTGVPT 203
Query: 284 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF----VLCSMENKV 338
G+ L+ L N L PG+L IV P GKS L + A K+ + S+E
Sbjct: 204 GFADLDALTNGLHPGQLIIVAARPALGKS----TLALDFARAASIKYDMPSIFFSLEMGR 259
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 398
E A +LL P ++ G+ + Q + +++ I D P++ V
Sbjct: 260 SEIAMRLLSAEASVP-LQSMRKGTVDARDWTTIAQTRGRINDAPLYI----DDSPNMTLV 314
Query: 399 LDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
AK L+ G++ +VID + + V + E VS+ +K A+ V
Sbjct: 315 EIRAKCRRLKQKVGLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLMAKELQVPVIA 373
Query: 457 VAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-----DPEAGPIDRVQ 507
++ P Q + + P + D+ S D I++HR +P AG D +
Sbjct: 374 LSQLNRGPEQRADKM---PAISDLRESGSLEQDADMVILLHRESAYEKDNPRAGEADFI- 429
Query: 508 VCVRKVRNKVVGTIGEAF 525
V K RN GTI F
Sbjct: 430 --VAKHRNGPTGTITVGF 445
>gi|378824245|ref|ZP_09846769.1| replicative DNA helicase [Sutterella parvirubra YIT 11816]
gi|378596931|gb|EHY30295.1| replicative DNA helicase [Sutterella parvirubra YIT 11816]
Length = 460
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 31/288 (10%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 325
ID Y +R S + G+STG++ L+ + L G+L I+ G P+ GK+ +L NI EH
Sbjct: 179 IDLYNNRNSSEITGVSTGYKNLDNVTAGLQRGDLIILAGRPSMGKT----SLALNIAEHV 234
Query: 326 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG----KAWLSNT 381
G L + A +L ++ I + ++ ++ +G + W T
Sbjct: 235 GIHLELPVAVFSMEMGADQLTQRLIS----------AVGKIDAQKLRKGMLDDEDWDRFT 284
Query: 382 FSLIRCENDSL-------PSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVSQTE 432
++ + EN + +I + + V + G GLV+ Y +L R S
Sbjct: 285 AAMHKLENKPIYIEETPALTINELASRTRRLVNQVGPLGLVVVDYIQLMQGSGRSNSDNR 344
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
++ +S++ +K A+ + ++ R + + P + D+ S D +
Sbjct: 345 SQELSEISRGLKSLARELQVPIICLSQLNRSVDSRTNRRPMMSDLRESGAIEQDADIIMF 404
Query: 492 IHRN--RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
I+R+ +PE + +V + K RN +GT+ FL N Y D
Sbjct: 405 IYRDVVYNPETPEKNLAEVIIAKQRNGPIGTLRMTFLGGNTRFEPYAD 452
>gi|226940658|ref|YP_002795732.1| DnaB [Laribacter hongkongensis HLHK9]
gi|226715585|gb|ACO74723.1| DnaB [Laribacter hongkongensis HLHK9]
Length = 471
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 117/285 (41%), Gaps = 41/285 (14%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
D+ID Y R + DE G+ TG+ L+E + L PG+L IV G P+ GK+ + L N+
Sbjct: 186 DKIDLLYSRDNPDEVTGVPTGFIDLDEKTSGLQPGDLIIVAGRPSMGKTAFSMNLAENVA 245
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK------- 375
H G + SME + A ++L GS R+ + G+
Sbjct: 246 IHTGLPVAVFSMEMPAAQLATRML--------------GSVGRLDQHKLRTGRFNDDDWD 291
Query: 376 ------AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRP 427
L+ T I E L +++ + A G GLV+ Y +L
Sbjct: 292 RFGKAVGVLAETKIHID-ETPGLTALELRARTRRLARQYGGKLGLVVIDYLQLMSGSAHA 350
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFI 483
Q T +S++ +K A+ + V ++ QL+ V + PN + D+ S
Sbjct: 351 TQQNRTAEISEISRSLKSLARELSVPVIALS---QLNRSVEQRPNKRPMMSDLRESGAIE 407
Query: 484 NKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D I ++R+ +P++ +V + K RN G + F+
Sbjct: 408 QDADLIIFMYRDEYYNPDSPDKGLAEVIIGKHRNGPTGIVRLTFM 452
>gi|451936466|ref|YP_007460320.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777389|gb|AGF48364.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 453
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 122/298 (40%), Gaps = 48/298 (16%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 307
E+ P++ + ID YHR D G+ TG+ L+++ + L PGEL IV G P+
Sbjct: 168 EIQPLLA-----QVVERIDELYHREGDTDITGVPTGFIDLDKMTSGLQPGELIIVAGRPS 222
Query: 308 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAVFSMEMGASQLAMRML--------------GSI 264
Query: 364 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 412
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEEDWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 472 NLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ D+ S D + I+R N+D + I ++ + K RN VGT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGI--AEIIIGKQRNGPVGTVKLTF 439
>gi|415905339|ref|ZP_11552510.1| Replicative DNA helicase [Herbaspirillum frisingense GSF30]
gi|407763362|gb|EKF72040.1| Replicative DNA helicase [Herbaspirillum frisingense GSF30]
Length = 451
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 40/284 (14%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R + D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 166 ERIDELYNRDNTSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 221
Query: 323 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH +G + SME + A ++L GS R+ G+
Sbjct: 222 EHVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLLD 267
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 268 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 327
Query: 428 VSQTETEY--VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 328 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQ 387
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 388 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 431
>gi|357285465|gb|AET72551.1| primase/helicase [Synechococcus phage S-CBP42]
Length = 352
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 144/361 (39%), Gaps = 45/361 (12%)
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
+IL D D G A E + +R + + +KDA+E L P A+ + +
Sbjct: 1 MILMFDNDDAGNQAARECVQLFPPDRVFLAP------IAGYKDASEALQAQDPDAIMQAI 54
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 305
N + Y + + + FD + H D + LN + L GEL +T
Sbjct: 55 WNKKPYSPKSIIDGKSLFDLLSTPLHGKDAD-----YPYADLNRVTGGLRLGELVTITAG 109
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
+GKS IC + G ++E ++ +L+ KP N E
Sbjct: 110 SGTGKSTLCGE-ICQHLINQGQTVGYIALEESIKRTGLRLMTVVANKPLHLNN-----ES 163
Query: 366 MTVEEFE--------QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417
++ EEF G +L + F + ++ +L+ + V GV+ +++D
Sbjct: 164 ISTEEFRSAFDRSVGSGHVFLRDGFGSVDPDS--------ILNDIRYMVKADGVQWIILD 215
Query: 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP----NL 473
+ L + E + + +T ++ F + + ++H R+ H G +L
Sbjct: 216 HLSIL-LSGNATDDERKMIDVTMTKLRSFVEETGIGMVLISHLRRAHQDKGHEDGAQVSL 274
Query: 474 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR-NKVVGTIGEAFLSYNRVT 532
+ GS H I + + +V+ R+ AG +R Q+ V K R N G GE LS++ T
Sbjct: 275 GQLRGS-HSIAQLSD-LVVALQRNITAGE-NRSQLVVLKNRFNGQTGPAGE--LSFSTET 329
Query: 533 G 533
G
Sbjct: 330 G 330
>gi|374371324|ref|ZP_09629292.1| replicative DNA helicase [Cupriavidus basilensis OR16]
gi|373097140|gb|EHP38293.1| replicative DNA helicase [Cupriavidus basilensis OR16]
Length = 463
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR +S D G+ TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDSSTDVTGVPTGFIDLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ R + D P++ + ++ + G GL++ Y +L
Sbjct: 282 EDWPRLTHAIQRMNDAQLFIDETPALTSMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 341
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 401
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 DVILFIYRDEVYNPDSQDKGTSEIIIGKQRNGPIGTVRLTFL 443
>gi|448260458|ref|YP_007348558.1| putative primase/helicase [Escherichia phage phAPEC8]
gi|408385330|gb|AFU62761.1| putative primase/helicase [Escherichia phage phAPEC8]
Length = 592
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 194/486 (39%), Gaps = 72/486 (14%)
Query: 70 RVMQKRHGHEVVIA---FPYWRNGKLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG 122
R ++ G ++V+ +P +LV K R DF+K Q +F + +
Sbjct: 117 RYEYRQEGDQMVVESCLYPTTIGKELVGFKRRIHPKDFSKPIGQVGKDVDLFGQIRFADR 176
Query: 123 ESDIIIVEGEMDKLS---MEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKM 179
++I GE D L+ M N +P + + ++ + Q +Y + K
Sbjct: 177 SHTVVITGGEHDALAAYQMLSENLDNKYELPAVVSGTTGETSMYKQVQ-AQYPFFEKFK- 234
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
+II+ D D G E + + + R + +R++ KDAN+ YL
Sbjct: 235 ------KIIVCMDNDKAGNEAFENIVKVLPRNKVYRMQM-------DLKDANQ---YLEE 278
Query: 240 GALKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 296
G K+ V+ +A LY G++ ++ E + T + N+L
Sbjct: 279 GRAKDFVKAFWSARLYTPAGVYASNVLYEAA------LECLESKMITLPPFMRVAANMLG 332
Query: 297 G-----ELTIVTGVPNSGKSEWIDALICNI-NEHAGWKFVLCSMENKVREHARKLLEKHI 350
G E+T++ + GK+ ++ + +I H + S+E ++++R LL +
Sbjct: 333 GGLVEEEITVILAKTSIGKTLMVNEITKHIIVAHPEHTLGILSLEATYKKYSRNLLSSFL 392
Query: 351 KKPFFEANYGGSAERMTVEE----FEQGKAWLSNTFS-------LIRCENDSLPSIKWVL 399
P R T EE E+ K + + + C +D ++ +
Sbjct: 393 HIPL---------HRKTPEEKFQILEENKEKILDFYEREDGSPRFYVC-DDRGADVESIK 442
Query: 400 DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
+ ++ GV LVIDPY++L +S + + ++ T +KR + +A + ++H
Sbjct: 443 EKVLEMIIYFGVTILVIDPYSDL-----LSGMDVQAQEELATWLKRIMKEYAITIIVISH 497
Query: 460 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDRVQVCVRKVRNKVV 518
++ N E D GS+ F+ K GI + RD A P++R ++N+
Sbjct: 498 VKKSANGGNEHLTEDDAMGSS-FLAK-GAGITLALERDKAAEDPVERNTTHCFILKNREF 555
Query: 519 GTIGEA 524
G A
Sbjct: 556 SETGPA 561
>gi|375098295|ref|ZP_09744560.1| replicative DNA helicase [Saccharomonospora marina XMU15]
gi|374659028|gb|EHR53861.1| replicative DNA helicase [Saccharomonospora marina XMU15]
Length = 460
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 36/315 (11%)
Query: 242 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ A+ +Y + DY DEIDA R G G+ TG+ L+
Sbjct: 153 INEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGTAQGVPTGFADLD 211
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARKLL 346
E+ N L PG++ IV P GKS +D A C+I G V+ S+E E ++L
Sbjct: 212 EVTNGLHPGQMIIVAARPGVGKSTLGLDFARSCSIRH--GLSSVIFSLEMSRTEIVMRML 269
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
+ + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 270 SAEARIRLADMRGG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNLTMMEIRAKARR 324
Query: 407 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 325 LKQRNDLKLIVVD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVVAISQLNRGP 383
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 518
+ P L D+ S D ++IHR DP AG D + + K R
Sbjct: 384 EQRTDKRPMLADLRESGSLEQDADMVMLIHRPDAWERDDPRAGEAD---LILAKHRAGPT 440
Query: 519 GTIGEAF-LSYNRVT 532
TI A L Y+R T
Sbjct: 441 STISVAHQLHYSRFT 455
>gi|396576970|emb|CBY99590.1| Phi92_gp161 [Enterobacteria phage phi92]
Length = 590
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 151/365 (41%), Gaps = 51/365 (13%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
+L Q +I+L D D G+A E+ + + R + + + DV KD N+ L+
Sbjct: 227 FLDQFKKIVLCMDNDEAGRAAVEKCVKILPRNKVYVMEL---TDV---KDPNQALV---E 277
Query: 240 GALKEVVE---NAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--V 294
G + ++ A+LY G++ ++ A + R + + +
Sbjct: 278 GKIDHFIDRFFKAKLYTPAGVYASNVLYE---AALECLEAKMITLPPFMRVASNMLGGGL 334
Query: 295 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMENKVREHARKLLEKHIKKP 353
+ E+T++ + GK+ ++ + +I H + S+E ++++R LL + P
Sbjct: 335 VEEEITVILAKTSIGKTLLVNEITKHIILAHPEHTLGILSLEATYKKYSRNLLSSFLHIP 394
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC---ENDSLPSIKWV------LDLAKA 404
R T EE E+ L + IR D P +D+ K
Sbjct: 395 L---------HRKTKEEKEK---ILKDNEEKIRDFYEREDGTPRFYVCDDRGANVDVIKE 442
Query: 405 AVLR----HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
VL GV LVIDPY++L VSQ E ++ T +KR + +A + ++H
Sbjct: 443 KVLEMIIYFGVTILVIDPYSDLLSGMDVSQQE-----ELATWLKRIMKEYAITIVVISHV 497
Query: 461 RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDRVQVCVRKVRNKVVG 519
++ N E D GS+ F+ K GI I RD +A P++R + ++N+
Sbjct: 498 KKSSNNSNEHIVEDDAMGSS-FLAK-GAGITIALERDKQAEDPMERNRTYCYILKNREFS 555
Query: 520 TIGEA 524
G A
Sbjct: 556 ETGAA 560
>gi|300691701|ref|YP_003752696.1| replicative DNA helicase [Ralstonia solanacearum PSI07]
gi|299078761|emb|CBJ51421.1| replicative DNA helicase [Ralstonia solanacearum PSI07]
gi|344170005|emb|CCA82379.1| replicative DNA helicase [blood disease bacterium R229]
gi|344171555|emb|CCA84170.1| replicative DNA helicase [Ralstonia syzygii R24]
Length = 472
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 119/291 (40%), Gaps = 44/291 (15%)
Query: 265 DEIDAYYHRTS-GDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR S D GI TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQSDITGIPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 410
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 455
>gi|302531306|ref|ZP_07283648.1| replicative DNA helicase [Streptomyces sp. AA4]
gi|302440201|gb|EFL12017.1| replicative DNA helicase [Streptomyces sp. AA4]
Length = 465
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 118/286 (41%), Gaps = 28/286 (9%)
Query: 242 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ A+ +Y + DY DEIDA R G GI TG+ +
Sbjct: 158 IDEVVDRAQAAIYDVTERRTSEDYVALEDLLQPTMDEIDAIASR-GGQSQGIPTGFADFD 216
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
EL N L PG++ IV P GKS + + + G V+ S+E E ++L
Sbjct: 217 ELTNGLHPGQMIIVAARPGVGKSTLGLDFVRSASIKHGLTSVIFSLEMSRTEIVMRMLSA 276
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
K + G +M+ +++ + +S +DS P++ + AKA L
Sbjct: 277 EAKIRLADMRGG----KMSDDDWTRLARRMSEVSEAPLFVDDS-PNMTMMEIRAKARRLK 331
Query: 408 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 465
RH +R +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 332 QRHDLRLVVVD-YLQLMTSGKRVESRQQEVSEFSRQLKLLAKEIEVPVIAISQLNRGPEQ 390
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 506
+ P L D+ S D I+I+R DP AG D +
Sbjct: 391 RTDKKPMLSDLRESGSLEQDADIVILINRPDAWERDDPRAGEADLI 436
>gi|302879165|ref|YP_003847729.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
gi|302581954|gb|ADL55965.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
Length = 465
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 116/280 (41%), Gaps = 34/280 (12%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ I+ Y R + E G STG+ L+++ + L PG+L IV G P+ GK+ + + NI
Sbjct: 181 ERIETLYGRDNASEVTGTSTGFADLDKMTSGLQPGDLVIVAGRPSMGKTAFSINVAENIA 240
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
+ + SME + A ++L GS ++ ++ GK W
Sbjct: 241 LDSKLPVAIFSMEMGAEQLAMRML--------------GSVGKLNQQDLRSGKLQDDDWG 286
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAK--------AAVLRHGVRGLVIDPYNEL--DHQRPV 428
T +L + ND+ I L+ ++G GL++ Y +L +
Sbjct: 287 RLTHALGKL-NDAPLFIDETAALSSLDLRARARRLHRQYGQLGLIVVDYLQLMSSNAGKA 345
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
S+ +S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 346 SENRATEISEISRGLKGLAKELQCPVMALSQLNRSLEQRPNKRPVMSDLRESGAIEQDAD 405
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ I+R+ + E ++ + K RN +GT+ AF
Sbjct: 406 LILFIYRDEVYNKETDDKGIAEIIIGKQRNGPIGTVALAF 445
>gi|444517523|gb|ELV11626.1| Twinkle protein, mitochondrial [Tupaia chinensis]
Length = 506
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 93/425 (21%), Positives = 166/425 (39%), Gaps = 56/425 (13%)
Query: 114 FYGLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ +++P G + + +P
Sbjct: 69 LFGLPLISRRDVEVVLTSRELDSLAVSQSTGQPTLALPRGT-ACLPPTLLP--------- 118
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q RI+ D A+ AR++ +RC VR P + N+
Sbjct: 119 -------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDQQPSPLEALNQ 170
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L L V+ A + +FR +E+ S E W +L
Sbjct: 171 GL------NLSRVLRTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGIHWSRFPDLN 221
Query: 293 NVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+L G ELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 222 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQ 280
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAV 406
+ R+ E+ ++ W L SI+ V+D + AV
Sbjct: 281 F------------AVGRLE-EQLDKYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAV 327
Query: 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+ + +VID + +S ++ ++FA ++CHV V HPR+ +
Sbjct: 328 YVYDISHVVIDNLQFMMGHEQLSTDRIAAQDYIIGAFRKFATDNSCHVTLVIHPRKEDD- 386
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAF 525
+ I GSA + DN ++I ++R GP R +QV +N+ G +G
Sbjct: 387 -DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVA----KNRFDGDVGVFP 440
Query: 526 LSYNR 530
L +N+
Sbjct: 441 LEFNK 445
>gi|111020417|ref|YP_703389.1| replicative DNA helicase [Rhodococcus jostii RHA1]
gi|110819947|gb|ABG95231.1| replicative DNA helicase [Rhodococcus jostii RHA1]
Length = 469
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 196 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 254
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 255 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 310
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 311 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 368
Query: 441 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 369 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 425
Query: 495 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 426 ATERDDPRGGEAD---LILGKHRNGPTATI 452
>gi|432340127|ref|ZP_19589619.1| replicative DNA helicase [Rhodococcus wratislaviensis IFP 2016]
gi|430774806|gb|ELB90377.1| replicative DNA helicase [Rhodococcus wratislaviensis IFP 2016]
Length = 432
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 159 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 217
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 218 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 273
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 274 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 331
Query: 441 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 332 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 388
Query: 495 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 389 ATERDDPRGGEAD---LILGKHRNGPTATI 415
>gi|329913485|ref|ZP_08275954.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327545343|gb|EGF30578.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 483
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 30/277 (10%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R D G+ TG+ L+++ + L PG+L IV G P+ GK+ + + N+
Sbjct: 201 ERIDELYNRDNQSDITGVPTGFADLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGENVA 260
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
G + SME + A ++L GS R+ GK W
Sbjct: 261 IDTGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGKLADEDWP 306
Query: 379 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
T ++ + + D P++ + ++ + G GL+I Y +L +
Sbjct: 307 RLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSGNSAGEN 366
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 367 RATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 426
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
I+R+ +P++ ++ + K RN +G+I F
Sbjct: 427 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLTF 463
>gi|340715527|ref|XP_003396263.1| PREDICTED: twinkle protein, mitochondrial-like [Bombus terrestris]
Length = 629
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 81/366 (22%), Positives = 145/366 (39%), Gaps = 41/366 (11%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
Y++ ++IL D A++ A++ +RC+ +R + K A E+
Sbjct: 265 YMESFKKLILWFGNDEISWYTAKQFAKKFNEKRCYFIR--PTDSQPRPKLAAEM-----N 317
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 297
L ++ENA+ + F+D +EI + + W+ L +L G
Sbjct: 318 YNLNHILENAQPLWHKSIITFQDLKEEILSDLQNNDKVQ---GVKWKRYPILNRILKGHR 374
Query: 298 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
E T++TG GK+ ++ ++ G + S E + AR +L++ P
Sbjct: 375 RGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLARTMLQQMAGVPLD 433
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
+ + E E GK L F + + IK V+D + A H + +V
Sbjct: 434 Q-----NLENFDSYANEFGK--LPIYFMTFHGQQN----IKVVMDAVEHATYIHDIAHVV 482
Query: 416 IDPYNELDHQRPVSQTETEYVS------QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 469
ID + S +YV +++ + FA + CHV + HPR+ + GE
Sbjct: 483 ID---NVQFMMGTSNDLNKYVDRFWKQDEIIAKFRNFATMYNCHVTIIIHPRKERS-DGE 538
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
I GSA + DN ++I NR +Q+ +N+ G +G L ++
Sbjct: 539 LTT-SSIFGSAKASQEADNVLIIQDNRLSSLRGKKYLQI----AKNRYSGDLGIMILDFD 593
Query: 530 RVTGEY 535
R+ Y
Sbjct: 594 RLKLSY 599
>gi|237749075|ref|ZP_04579555.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
gi|229380437|gb|EEO30528.1| replicative DNA helicase [Oxalobacter formigenes OXCC13]
Length = 463
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 126/294 (42%), Gaps = 33/294 (11%)
Query: 265 DEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R + D G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 182 ERIDELYNRDNRNDITGVPTGFMDLDRMTSGLQPGDLIIVAGRPSMGKTAFSVNIGENVA 241
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKA 376
+G + SME + A ++L + G A+ R+T +++ + +
Sbjct: 242 IESGLPVAIFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLADEDWPRLTYAIQKMNEAQL 301
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436
++ T +L C + + + +K GL+I Y +L + +
Sbjct: 302 YIDETPAL-SCTDLRARARRLARQCSKL--------GLIIIDYLQLMSPSSAGENRATEI 352
Query: 437 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVI 492
S++ +K A+ C V ++ QL+ V + PN + D+ S D + I
Sbjct: 353 SEISRGLKALAKELNCPVIALS---QLNRSVEQRPNKRPVMSDLRESGAIEQDADLILFI 409
Query: 493 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-------SYNRVTGEYMD 537
+R+ +P++ ++ V K RN +G + FL +Y +G Y D
Sbjct: 410 YRDEVYNPDSADKGTAEIIVGKQRNGPIGNVRLTFLGQFTKFDNYATGSGSYND 463
>gi|397733364|ref|ZP_10500081.1| replicative DNA helicase [Rhodococcus sp. JVH1]
gi|396930756|gb|EJI97948.1| replicative DNA helicase [Rhodococcus sp. JVH1]
Length = 426
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 25/270 (9%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 153 MDEIDSIASR-GGISLGVPTGFVELDEITNGLHPGQMIIVAARPGVGKSTLGMDFLRSCS 211
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G V+ S+E E +LL K + G +MT +++ + +S
Sbjct: 212 VKHGMASVMFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----KMTDDDWTKLARRMSEIS 267
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L +H ++ +VID + + V + E VS+
Sbjct: 268 EAPLFIDDS-PNLTMMEIRAKARRLKQKHDIKLIVIDYLQLMSSGKKVESRQQE-VSEFS 325
Query: 441 TMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
+K A+ V + P Q + + P + D+ S D I+++R
Sbjct: 326 RSLKLLAKELEVPVVAICQLNRGPEQRQD---KRPQVADLRESGSLEQDADMVILLYRPD 382
Query: 495 ---NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 383 ATERDDPRGGEAD---LILGKHRNGPTATI 409
>gi|386811301|ref|ZP_10098527.1| replicative DNA helicase [planctomycete KSU-1]
gi|386406025|dbj|GAB61408.1| replicative DNA helicase [planctomycete KSU-1]
Length = 444
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 117/264 (44%), Gaps = 33/264 (12%)
Query: 280 GISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 334
G+STG+ L+++ + EL IV P+ GK+ +L NI EH G V+ S+
Sbjct: 186 GLSTGFYDLDDITCGLQASELIIVAARPSMGKT----SLALNIIEHVGVVEKKPAVIFSL 241
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----- 389
E ++ A+ +L H + + G F K W + +F L
Sbjct: 242 EMSAQQVAQNMLCSHAQVDAHKLRMG----------FLDDKQWSNLSFGLGSLSEAPIFI 291
Query: 390 DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447
D P + + AKA L+ + ++ +V+D Y +L + P +++ + +S + +K +
Sbjct: 292 DDTPGLTVLEVRAKARRLKAQYDIQVVVVD-YLQL-MESPRAESRQQEISIISRGLKSLS 349
Query: 448 QHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPID 504
+ + V V+ R + G P + D+ S D I++HR+ DPE +
Sbjct: 350 RELSIPVIAVSQLNRSVEAREGHKPRMSDLRESGSIEQDADVIILLHRDSYYDPEKD--N 407
Query: 505 RVQVCVRKVRNKVVGTIGEAFLSY 528
++ + K RN GT+ AF S+
Sbjct: 408 TAELIIAKQRNGPTGTVKLAFRSH 431
>gi|153002957|ref|YP_001377282.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
gi|152026530|gb|ABS24298.1| replicative DNA helicase [Anaeromyxobacter sp. Fw109-5]
Length = 474
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 112/268 (41%), Gaps = 35/268 (13%)
Query: 280 GISTGWRALNELYNVL---PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
G+ TG ++L++ N L PG LT++ P+ GK+ + + + AG K S+E
Sbjct: 203 GVPTGIQSLDK--NTLGFQPGTLTVLAARPSVGKTAFALNIATHAATRAGKKVAFFSLEM 260
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCEND 390
+ A ++L + + + G + +++ + G A WL + F L E
Sbjct: 261 PSDQLALRMLASEARLDWRRLSAGQLSAYDWQKIATHADKLGAASIWLDDNFVLTPVELR 320
Query: 391 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVKRF 446
S K L+ +G LV+ Y +L H SQ+ + ++ + +K
Sbjct: 321 S-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRASQSREQEIATISRSLKSL 369
Query: 447 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG 501
A+ C + ++ R + GEPP L D+ S D + +HR N+D ++G
Sbjct: 370 AKELECPIVALSQLNRGVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRNDEDNKDVQSG 429
Query: 502 PID----RVQVCVRKVRNKVVGTIGEAF 525
VQ+ V K R GTI F
Sbjct: 430 TASGDTLEVQLVVAKQRQGPTGTIPLVF 457
>gi|423477637|ref|ZP_17454352.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
gi|402429717|gb|EJV61800.1| hypothetical protein IEO_03095 [Bacillus cereus BAG6X1-1]
Length = 338
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 55 YFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF-NKKFWQEKDTEKV 113
Y +R IS T ++ R VVI + + NG+L N KYR K FW EKD + +
Sbjct: 137 YLNDRGISEGTQCAMKIGYDRIRQAVVIPW-FDTNGRLANIKYRKTRGKAFWYEKDGKPI 195
Query: 114 ---FYGLDDIEGESDI---IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
YGL + +I + E E+D +S AG + +G S +K
Sbjct: 196 GDLIYGLH-LAYRRNIKRAVYCEAEIDAMSFMTAG---VFGLANGGSSFNQRK------- 244
Query: 168 DTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAEELARRV-GRERCWRVRWPKKNDVD 225
LK +++ D DP G+ L +EL + + G+ R +
Sbjct: 245 ---------ADQLLKSPIEELVIVADNDPAGEKLRKELEKYLNGKIRL------TNGYIQ 289
Query: 226 HFKDANEVLMYLGPGALKEVVENAE 250
KDANE L+ G G+L VV+NAE
Sbjct: 290 GHKDANEALVKEGKGSLISVVDNAE 314
>gi|237746921|ref|ZP_04577401.1| replicative DNA helicase [Oxalobacter formigenes HOxBLS]
gi|229378272|gb|EEO28363.1| replicative DNA helicase [Oxalobacter formigenes HOxBLS]
Length = 463
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 119/285 (41%), Gaps = 44/285 (15%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R + ++ G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 182 ERIDELYNRDNQNDITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKT----AFSVNIG 237
Query: 323 EH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH +G + SME + A ++L GS R+ G+
Sbjct: 238 EHVAIESGLPVAVFSMEMSGAQLAMRML--------------GSVGRLDQHRLRTGRLAD 283
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W TF++ + D P++ A+ + GL+I Y +L
Sbjct: 284 EDWPRLTFAIQKMNEAQLYIDETPALSCTELRARARRLARQCSKLGLIIVDYLQLMAPSS 343
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFI 483
+ +S++ +K A+ C V ++ QL+ V + PN + D+ S
Sbjct: 344 AGENRATEISEISRGLKALAKELNCPVIALS---QLNRSVEQRPNKRPVMSDLRESGAIE 400
Query: 484 NKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ V K RN +G++ FL
Sbjct: 401 QDADLILFIYRDEVYNPDSPDKGMAEIIVGKQRNGPIGSVRLTFL 445
>gi|254282000|ref|ZP_04956968.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
gi|219678203|gb|EED34552.1| replicative DNA helicase [gamma proteobacterium NOR51-B]
Length = 465
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 36/299 (12%)
Query: 238 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP- 296
GP +K ++E A L I LFN + GD G++TG+ LN + + L
Sbjct: 174 GPRGMKPLLEGA-LERIEDLFN--------------SGGDITGLTTGFIDLNRMTSGLQD 218
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
+L IV G P+ GK+ + LI N +H + SME + ++L K
Sbjct: 219 SDLVIVAGRPSMGKTSFAMNLIENAVDHTEKPLAVFSMEMPAEQLVIRMLSSVGKI---- 274
Query: 357 ANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLPSI--KWVLDLAKAAVLRH 409
+ R+ + EQ + W LS + ++ N D P++ + A+ H
Sbjct: 275 -----NQTRVRTGKLEQ-EDWPKLSAAMNRLKDANVHIDDTPALTPTELRSRARRIAREH 328
Query: 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVG 468
G G+++ Y +L ++ T +S++ +K A+ C V ++ R L
Sbjct: 329 GDLGMIMVDYLQLMRVAGAAEGRTAEISEISRSLKAIAKEFRCPVVALSQLNRSLEQRPN 388
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAF 525
+ P D+ S D + I+R+ DR ++ + K RN +GT AF
Sbjct: 389 KRPVNSDLRESGAIEQDADVIMFIYRDEVYHEDSPDRGVAEIIIGKQRNGPIGTCKLAF 447
>gi|393759222|ref|ZP_10348038.1| replicative DNA helicase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393162450|gb|EJC62508.1| replicative DNA helicase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 456
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 38/291 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR E G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 182 ERIDELYHREGDSEVTGVPTGFVDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNIG 237
Query: 323 EHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--VE 369
EH G + SME + A + LL++H ++ A+ R+T V+
Sbjct: 238 EHVAIAQGLPVAVFSMEMGAVQLAMRMVGSVGLLDQHRMRTGKLTAD---DWPRLTHAVQ 294
Query: 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
+ ++ + ++ T L E V A+ + G GL+I Y +L
Sbjct: 295 QVQEAQIYIDETPGLSSME---------VRARARRLARQCGQLGLIIIDYLQLMSSSGGE 345
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
TE +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 346 NRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 404
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
+ I+R+ +P++ ++ + K RN G IG L++ + ++D
Sbjct: 405 ILFIYRDEVYNPDSPDKGTAEIIIGKQRN---GPIGSVRLTFAGASTRFLD 452
>gi|303232314|ref|ZP_07319009.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
gi|302481571|gb|EFL44636.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4]
Length = 477
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 38/320 (11%)
Query: 234 LMYLGPGALKEVVENAE--LYPIMG---LFNFRDYFDEIDAYY-----HRTSGDEFGIST 283
L + P KEV+++AE L + N+ + + + Y + SG GI+T
Sbjct: 154 LAFDAPEDTKEVIDSAENMLLEVTNKEVASNYSPLSEVMSSLYTDLTEMQASGTPQGINT 213
Query: 284 GWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342
+ ++ L + PG++ +V P GK+ + L N + G L S+E E A
Sbjct: 214 DYPTVDRWLQGLRPGQMVVVGARPGVGKTSFALNLAVNFANN-GASVALFSLEMSKVEIA 272
Query: 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL--SNTFSLIRCENDSLPSIKWVLD 400
++LL K A GGS + +Q A L +N S + D P
Sbjct: 273 QRLLSAQ-AKINLSAIRGGSIQS------DQWPAILQATNDLSQLDIMIDDTPGTTVTEI 325
Query: 401 LAKAA-VLRHGVRGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
AKA +L RG+VI Y +L R + + VS+M +K A++ V
Sbjct: 326 RAKARRMLNKKERGIVIIDYLQLLSPPQGRFRADSRATEVSEMSRGIKIMAKNLEVPVVA 385
Query: 457 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN---------RDPEAGPIDRV 506
++ RQ+ + P L D+ S D I++ R+ + PE G D
Sbjct: 386 LSQLNRQVTGRSSQRPQLSDLRESGAIEQDADIVILLDRSMTEEEAQRPQRPEMGQTD-- 443
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K R+ +GT+ AFL
Sbjct: 444 -LIIAKNRSGPLGTVSLAFL 462
>gi|134095343|ref|YP_001100418.1| replicative DNA helicase [Herminiimonas arsenicoxydans]
gi|133739246|emb|CAL62295.1| Replicative DNA helicase [Herminiimonas arsenicoxydans]
Length = 461
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R ++ D G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 234
Query: 323 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
E +G + SME + A ++L GS R+ GK
Sbjct: 235 ETVAIESGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGKLAD 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSANS 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRNLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G++ FL
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTFL 442
>gi|218290737|ref|ZP_03494819.1| DnaB domain protein helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218239275|gb|EED06474.1| DnaB domain protein helicase domain protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 448
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 121/255 (47%), Gaps = 18/255 (7%)
Query: 278 EFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSME 335
E GI TGW +L+ L +L +V G + GKS + ++ I + G+K ++ S+E
Sbjct: 193 ERGILTGWASLDRLTLGWKRKDLIVVGGRTSVGKSAFSVEVAIRAARQ--GYKVLIFSLE 250
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
E R + ++ G AE+ ++ +++ ++ C+ + +
Sbjct: 251 MS-EEQVRARMASNLAMVPLHLLMDGKAEKDDLDRVNNLGPFIA---TIAVCDKRGMTAE 306
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ-TETEYVSQMLTMVKRFAQHHACHV 454
+ ++ + ++G+ +++D E+D ++P+ Q T ++++ +++ AQ C V
Sbjct: 307 EISTEMRRYK-RKYGLDLVIVDYIQEID-EKPLKQDTAGAALARVTRKLRKAAQVCDCAV 364
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
++ R+ G+ P L D+ GS+ D I++HR+RD E + +QV V K R
Sbjct: 365 MALSQLRREAE--GKAPTLADLFGSSGIETGADMIILLHRDRDEENK--NALQVHVAKHR 420
Query: 515 NKVVGTIGEAFLSYN 529
N G G+ + YN
Sbjct: 421 N---GPTGKVEMHYN 432
>gi|390356451|ref|XP_786602.3| PREDICTED: twinkle protein, mitochondrial-like [Strongylocentrotus
purpuratus]
Length = 678
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/437 (20%), Positives = 177/437 (40%), Gaps = 62/437 (14%)
Query: 108 KDTEKVFYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEE 166
+D +G ++ + ++II+ E+D +++ E + +++P G + + ++ +P
Sbjct: 239 RDFSPGLFGFHLVQPQHTEIILTANELDAMAVSEVIGQSALALPRGT-AYLPQEVLP--- 294
Query: 167 QDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
L+Q +I+L D A+ AR++ +RC+ +R
Sbjct: 295 -------------LLEQFQKIVLWFGNDMRSWEAAKSFARKLNLKRCYFIRP-------- 333
Query: 227 FKDANE-VLMYLGPG-ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTG 284
DA+ L L G +LK ++ A + +FR DE+ S E
Sbjct: 334 -LDAHPGPLQALTKGLSLKTILRQATPMSHKSIVSFRALRDEV---LGELSHAEQVAGVK 389
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
W+ L + G ELT+ TG SGK+ ++ A + LC
Sbjct: 390 WKRYPLLNKHMKGHRRGELTVFTGPTGSGKTTFM----------AEYSLDLCMQGVNTLW 439
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSL---PSIKW 397
+ ++ + K + E+ +++F++ W ++ F L+ + S+K
Sbjct: 440 GSFEIQNVRLAKIMLTQFSMCNLEK-NIDKFDR---W-ADKFELLPLHFMTFHGQQSLKT 494
Query: 398 VLDLAKAAVLRHGVRGLVIDPYNELD--HQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
V+D +V H + +++D + +R +S ++ ++FA ++CHV
Sbjct: 495 VIDAMAHSVYVHDIEHVILDNLQFMVGVSERQLSVDRFAIYDNLIAAFRKFATENSCHVS 554
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
V HPR+ + I GSA + DN +++ R +QV V+N
Sbjct: 555 VVIHPRKEKE--SDELQTASIFGSAKASQEADNVLILQDRRMTALKGRKYIQV----VKN 608
Query: 516 KVVGTIGEAFLSYNRVT 532
+ G +G L++N+ T
Sbjct: 609 RFDGDLGIIPLTFNKET 625
>gi|379711640|ref|YP_005266845.1| Replicative DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374849139|emb|CCF66215.1| Replicative DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 460
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 19/267 (7%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+E+ N L PG++ IV P GKS + + +
Sbjct: 187 MDEIDSIASR-GGISLGVPTGFTELDEITNGLHPGQMIIVAARPGVGKSTLGMDFMRSCS 245
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G V+ S+E E +LL K + G RM+ +++ + +S
Sbjct: 246 IKHGLASVIFSLEMSRTEIVMRLLSAEAKIKLGDMRSG----RMSDDDWTKLARRMSEIS 301
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L RH ++ +V+D + + V + E VS
Sbjct: 302 EAPLFVDDS-PNLTMMEIRAKARRLKQRHDLKLVVVDYLQLMTSGKKVESRQQE-VSDFS 359
Query: 441 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----- 494
+K A+ V ++ R + P + D+ S D I++HR
Sbjct: 360 RNLKLLAKELEVPVVAISQLNRGPEQRTDKRPMVSDLRESGSLEQDADMVILLHRPDAFE 419
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 420 RDDPRGGEAD---LILGKHRNGPTATI 443
>gi|350422873|ref|XP_003493311.1| PREDICTED: twinkle protein, mitochondrial-like [Bombus impatiens]
Length = 622
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 38/364 (10%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
Y++ ++IL D A++ A++ +RC+ +R + K A E+
Sbjct: 267 YMESFKKLILWFGNDEISWYTAKQFAKKFNEKRCYFIR--PTDSQPRPKLAAEM-----N 319
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 297
L +++NA+ + F+D +EI + W+ + L +L G
Sbjct: 320 YNLNNILQNAQPLWHKSIITFQDLKEEILCDLQNNDKVQ---GVKWKRYSTLNRILKGHR 376
Query: 298 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
E T++TG GK+ ++ ++ G + S E + AR +L++ P
Sbjct: 377 RGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLARTMLQQMAGVPLD 435
Query: 356 E--ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
E N+ A FE+ + TF +IK V+D + A H +
Sbjct: 436 ENLENFDSYAN-----AFEKLPIYFM-TFH-------GQQNIKVVMDAVEHATYIHDIAH 482
Query: 414 LVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPP 471
+VID + S+ + Q ++ + FA + CHV + HPR+ E
Sbjct: 483 VVIDNVQFMMGTYNDSKYMDRFWKQDEIVGKFRNFATMYNCHVTMIIHPRK--ERTDEEL 540
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531
I GSA + DN ++I NR +QV +N+ G +G L +++
Sbjct: 541 TTSSIFGSAKASQEADNVLIIQDNRLTNLRGKKYLQV----AKNRYSGDLGIMILDFDKS 596
Query: 532 TGEY 535
Y
Sbjct: 597 KLSY 600
>gi|226940430|ref|YP_002795504.1| Replicative DNA helicase [Laribacter hongkongensis HLHK9]
gi|226715357|gb|ACO74495.1| Replicative DNA helicase [Laribacter hongkongensis HLHK9]
Length = 458
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G+ TG AL++ + L PGEL +V G P+ GKS + +I N A V
Sbjct: 186 GLPTGMAALDDAIDGLHPGELIVVAGRPSMGKS-CLAEMIARTNAKA---------RRAV 235
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS------LIRCENDSL 392
R H ++ + A+ G E + E+ + FS I + D+
Sbjct: 236 RFHTYEMPACDVVMRSAAADMGIPLENIRKARMERHELDRFMVFSSRQEGWQIVFDEDTG 295
Query: 393 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
++ + A+ + G+ LV+D + + ++ ET + ++ + +KR A+
Sbjct: 296 ANVDRIAMRARRQKRKSGLDLLVVDHLHLMPYR---GDNETRGLGEITSSLKRLARDLQI 352
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-NRDPEAGPIDRVQVCV 510
V VA R+ G P L D+ GS D + HR + ++ P ++ V
Sbjct: 353 PVVLVAQLNREAGKNAGRRPTLTDLRGSGAIEQDADVIVFCHRPHYYDDSRPASEAELIV 412
Query: 511 RKVRNKVVGTIG 522
K RN VGT+G
Sbjct: 413 AKSRNGPVGTLG 424
>gi|163857364|ref|YP_001631662.1| replicative DNA helicase [Bordetella petrii DSM 12804]
gi|163261092|emb|CAP43394.1| dnaB [Bordetella petrii]
Length = 457
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 115/282 (40%), Gaps = 38/282 (13%)
Query: 264 FDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 321
+ ID YHR D G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 178 VERIDELYHREGDSDVTGVPTGFSDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNI 233
Query: 322 NEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 376
EH G + SME + A ++L GS + GK
Sbjct: 234 GEHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLV 279
Query: 377 ---WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQR 426
W T ++ ++ D P++ + A++ L G GL+I Y +L
Sbjct: 280 ADDWPRVTHAVQLMQDAQVYIDETPALSAMEVRARSRRLARQCGQLGLIIIDYLQLMAGN 339
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C + ++ R L + P + D+ S
Sbjct: 340 GGGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 399
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ V K RN +GT+ F
Sbjct: 400 ADLILFIYRDEVYNPDSPDKGTAEIIVGKQRNGPIGTVRLTF 441
>gi|149690131|ref|XP_001499990.1| PREDICTED: twinkle protein, mitochondrial-like [Equus caballus]
Length = 682
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 101/430 (23%), Positives = 171/430 (39%), Gaps = 66/430 (15%)
Query: 114 FYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+GL I + ++++ E+D L++ ++ L +++P G + + +P
Sbjct: 247 LFGLPLITRRDVEVVLTSRELDSLALNQSTGLPTLALPRGT-ACLPPALLP--------- 296
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+Q RI+L D A+ AR++ +RC VR P + + N
Sbjct: 297 -------YLEQFRRIVLWLGDDLRSWEAAKLFARKLNPKRCSLVR-PGDHQPRPLEALNR 348
Query: 233 VLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY 292
L + ++ A + +FR +E+ S E W +L
Sbjct: 349 GLNF------SRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQVAGIRWGRFPDLN 399
Query: 293 NVLPG----ELTIVTGVPNSGKSEWID--AL-ICNINEHAGWKFVLCSMENKVR----EH 341
+L G ELT+ TG SGK+ +I AL +C + W S R +
Sbjct: 400 RLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQGVNTLWGSFEISNVRLARVMLTQF 459
Query: 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL 401
A LE + K Y A+R FE L F + SI+ V+D
Sbjct: 460 AVGRLEDQLDK------YDEWADR-----FED----LPLYFMTFHGQQ----SIRTVIDT 500
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPR 461
+ AV + + +VID + +S ++ ++FA ++CHV V HPR
Sbjct: 501 MQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPR 560
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGT 520
+ + + I GSA + DN ++I ++R GP R +QV +N+ G
Sbjct: 561 KEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGD 613
Query: 521 IGEAFLSYNR 530
IG L +N+
Sbjct: 614 IGVFPLEFNK 623
>gi|328789280|ref|XP_003251258.1| PREDICTED: twinkle protein, mitochondrial-like [Apis mellifera]
Length = 452
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 139/372 (37%), Gaps = 54/372 (14%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR----WPKKNDVDHFK-DANEVL 234
Y++ ++IL D A A+++ +RC+ +R P+ + N +L
Sbjct: 102 YMESFKKLILWFGNDEVSWYSARHFAKKLNEKRCYLIRPTDSQPRPTLAAKMNYNFNNIL 161
Query: 235 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV 294
M P K ++ F D +EI E W+ L +
Sbjct: 162 MNAQPLWHKSII------------TFNDLKEEILIDLQNNDKVE---GVKWKRYTSLNRI 206
Query: 295 LPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI 350
L G E T++TG GK+ ++ ++ G + S E + R +L++ +
Sbjct: 207 LKGHRRGEFTVLTGPTGCGKTTFMSEYSLDL-AMQGINTLWGSFEIRNVRLIRTMLQQMV 265
Query: 351 KKPFFE-----ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA 405
P E Y + E++ + F + + IK V+D + A
Sbjct: 266 GVPLNENLENFYTYANAFEKLPI------------YFMTFHGQQN----IKVVMDAVEHA 309
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQL 463
H + +VID + S+ + Q ++ + FA + CHV + HPR+
Sbjct: 310 TYVHDIAHVVIDNVQFMMGMTNDSKYIDRFWKQDDIIAKFRNFATTYNCHVTMIIHPRKE 369
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGE 523
++ E I GSA + DN ++I NR +QV +N+ G +G
Sbjct: 370 RSY--EELTTSSIFGSAKASQEADNILIIQDNRLTSIRGKKYLQVA----KNRYSGDLGI 423
Query: 524 AFLSYNRVTGEY 535
L +++ + Y
Sbjct: 424 MVLDFDKSSLSY 435
>gi|424776830|ref|ZP_18203805.1| replicative DNA helicase [Alcaligenes sp. HPC1271]
gi|422887870|gb|EKU30264.1| replicative DNA helicase [Alcaligenes sp. HPC1271]
Length = 456
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 126/291 (43%), Gaps = 38/291 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR E G+ TG+ L+++ + L PG+L IV G P+ GK+ + NI
Sbjct: 182 ERIDELYHREGDSEVTGVPTGFIDLDKMTSGLQPGDLVIVAGRPSMGKTSF----SMNIG 237
Query: 323 EHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--VE 369
EH G + SME + A + LL++H ++ A+ R+T V+
Sbjct: 238 EHVAIAQGLPVAVFSMEMGAVQLAMRMVGSVGLLDQHRMRTGKLTAD---DWPRLTHAVQ 294
Query: 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
+ ++ + ++ T L E V A+ + G GL+I Y +L
Sbjct: 295 QVQEAQIYIDETPGLSSME---------VRARARRLARQCGQLGLIIIDYLQLMSSSGGE 345
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
TE +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 346 NRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 404
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
+ I+R+ +P++ ++ + K RN G IG L++ + ++D
Sbjct: 405 ILFIYRDEVYNPDSPDKGTAEIIIGKQRN---GPIGSVRLTFAGASTRFLD 452
>gi|354615369|ref|ZP_09033148.1| replicative DNA helicase [Saccharomonospora paurometabolica YIM
90007]
gi|353220282|gb|EHB84741.1| replicative DNA helicase [Saccharomonospora paurometabolica YIM
90007]
Length = 459
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 133/315 (42%), Gaps = 36/315 (11%)
Query: 240 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 287
G + EVV+ A+ +Y + DY DEIDA R G G+ TG+
Sbjct: 150 GDINEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGTSQGVPTGFAD 208
Query: 288 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 344
L+E+ N L PG++ IV P GKS +D A C+I G V+ S+E E +
Sbjct: 209 LDEVTNGLHPGQMIIVAARPGVGKSTLGLDFARACSIRN--GLSSVIFSLEMSRVEIVMR 266
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
+L + + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 267 MLSAEARIRLADMRGG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNLTMMEIRAKA 321
Query: 405 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 322 RRLKQRNDLQLIVVD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVVAISQLNR 380
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN-----RDPEAGPIDRVQVCVRKVRNK 516
+ P L D+ S D ++IHR DP AG D + + K R
Sbjct: 381 GPEQRTDKRPMLADLRESGSLEQDADMVMLIHRPDAFELDDPRAGEAD---LILAKHRAG 437
Query: 517 VVGTIGEAF-LSYNR 530
TI A L Y+R
Sbjct: 438 PTSTISVAHQLHYSR 452
>gi|39644620|gb|AAH13349.1| C10orf2 protein [Homo sapiens]
Length = 451
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/462 (20%), Positives = 175/462 (37%), Gaps = 66/462 (14%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 12 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 71
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 72 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 129
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 130 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 172
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 173 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 225
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIV 302
A + +FR +E+ S E W +L +L GELT+
Sbjct: 226 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 282
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 283 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 328
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 329 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 388
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
+ +S ++ + ++FA + CHV V HPR+
Sbjct: 389 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRK 430
>gi|255304946|ref|NP_001157284.1| twinkle protein, mitochondrial isoform B [Homo sapiens]
gi|14582618|gb|AAK69559.1|AF292005_1 truncated putative T7-like mitochondrial DNA helicase [Homo
sapiens]
Length = 582
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 93/462 (20%), Positives = 175/462 (37%), Gaps = 66/462 (14%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIV 302
A + +FR +E+ S E W +L +L GELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462
+ +S ++ + ++FA + CHV V HPR+
Sbjct: 520 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRK 561
>gi|74318119|ref|YP_315859.1| primary replicative DNA helicase [Thiobacillus denitrificans ATCC
25259]
gi|74057614|gb|AAZ98054.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
Length = 463
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 120/292 (41%), Gaps = 39/292 (13%)
Query: 260 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 317
++ + ID YHR + G+ TG+ L++ + L PG+L IV G P+ GK+ + +
Sbjct: 180 LKEVVERIDELYHRDNDSGITGVPTGFHDLDQKTSGLQPGDLVIVAGRPSMGKTAFSINI 239
Query: 318 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA- 376
N+ G + SME + +++ GS R+ GK
Sbjct: 240 AENVALDTGLPVAVFSMEMGGTQLVMRMI--------------GSVGRLDQHRLRTGKLG 285
Query: 377 ---WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH---GVRGLVIDPYNELDHQ 425
W T++L + D P + VL+L A G GL++ Y +L
Sbjct: 286 EDDWQRLTYALGKLNEAPVYIDESPGLN-VLELRARARRLMRQCGKLGLIVIDYLQLMAG 344
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAH 481
+ +S++ +K A+ HV +A QL+ + + PN + D+ S
Sbjct: 345 SGGGENRATEISEISRALKGLAKE--LHVPVIAL-SQLNRGLEQRPNKRPVMSDLRESGA 401
Query: 482 FINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
D + I+R+ +P+ ++ + K RN +GT+ AFL Y R
Sbjct: 402 IEQDADVILFIYRDEVYNPDTQDKGTAEIIISKQRNGPIGTVRLAFLGEYTR 453
>gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
gi|151279923|gb|ABR88333.1| replicative DNA helicase [Janthinobacterium sp. Marseille]
Length = 461
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 116/282 (41%), Gaps = 38/282 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R ++ D G+ TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 234
Query: 323 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
E +G + SME + A ++L GS R+ G+
Sbjct: 235 ETVAIESGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLAD 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSANS 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 AGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G + FL
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGAVRLTFL 442
>gi|420329804|ref|ZP_14831508.1| DNA primase/helicase [Shigella flexneri K-1770]
gi|391259011|gb|EIQ18092.1| DNA primase/helicase [Shigella flexneri K-1770]
Length = 412
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMY-LGP 239
L + I ++ D D G+ A E+A R+G RC V P +KD NE LM +
Sbjct: 33 LDRFEEIFISMDVDDVGREAAREIASRLGEHRCRLVTLP-------YKDINECLMNGVTE 85
Query: 240 GALKEVVENAELYPIMGLFNFRDYF-DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGE 298
+ + + A + L++ R+++ D I+A+Y + ++ + W +L + + E
Sbjct: 86 DEIWQYIGTASYFDPEELYSAREFYQDTINAFYGK---QQYLFNPPWESLADKFQFREAE 142
Query: 299 LTIVTGVPNSGKSEWIDALICNINE 323
LT+V GV GK+ C +NE
Sbjct: 143 LTLVNGVNGHGKA-------CPLNE 160
>gi|134103767|ref|YP_001109428.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133916390|emb|CAM06503.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 462
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 128/311 (41%), Gaps = 32/311 (10%)
Query: 242 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
++EVV+ A+ +Y + DY DEIDA R G+ GI TG+ L+
Sbjct: 155 IEEVVDRAQAAIYDVTERRTSEDYAALEDLLQPTMDEIDAIASR-GGESLGIPTGFTDLD 213
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 214 AVTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIKHGLASVIFSLEMGKTEIVMRMLSA 273
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
+ + G RMT +++ + +S +DS P++ + AKA L
Sbjct: 274 EARIRLGDMRGG----RMTDDDWTRLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 328
Query: 408 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 465
R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 329 QRNDIQLIVVD-YMQLMTSGKRVESRQQEVSEFSRNLKLLAKELEVPVVAISQLNRGPEQ 387
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVVGT 520
+ P L D+ S D I+IHR DP G D + + K R T
Sbjct: 388 RTDKKPQLSDLRESGSLEQDADMVILIHRPDAFERDDPRMGEAD---LILAKHRAGPTST 444
Query: 521 IGEAF-LSYNR 530
I A L Y+R
Sbjct: 445 ITVAHQLHYSR 455
>gi|291007707|ref|ZP_06565680.1| replicative DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 464
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 128/311 (41%), Gaps = 32/311 (10%)
Query: 242 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
++EVV+ A+ +Y + DY DEIDA R G+ GI TG+ L+
Sbjct: 157 IEEVVDRAQAAIYDVTERRTSEDYAALEDLLQPTMDEIDAIASR-GGESLGIPTGFTDLD 215
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 216 AVTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIKHGLASVIFSLEMGKTEIVMRMLSA 275
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
+ + G RMT +++ + +S +DS P++ + AKA L
Sbjct: 276 EARIRLGDMRGG----RMTDDDWTRLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 330
Query: 408 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 465
R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 331 QRNDIQLIVVD-YMQLMTSGKRVESRQQEVSEFSRNLKLLAKELEVPVVAISQLNRGPEQ 389
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVVGT 520
+ P L D+ S D I+IHR DP G D + + K R T
Sbjct: 390 RTDKKPQLSDLRESGSLEQDADMVILIHRPDAFERDDPRMGEAD---LILAKHRAGPTST 446
Query: 521 IGEAF-LSYNR 530
I A L Y+R
Sbjct: 447 ITVAHQLHYSR 457
>gi|383862285|ref|XP_003706614.1| PREDICTED: twinkle protein, mitochondrial-like [Megachile
rotundata]
Length = 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 34/362 (9%)
Query: 180 YLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP 239
+++ ++IL D A A+++ +RC+ +R +D + ++ + +G
Sbjct: 200 FMESFKKLILWFGNDETSWHTARHFAKKLNEKRCYFIR-----PIDS-QPRPKLAVEIGY 253
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-- 297
K +++NA+ + F++ +++ + + W+ L +L G
Sbjct: 254 D-FKSILQNAQPVWHKSIITFQEIREDVLSDLQNIEKVQ---GVKWKRYPTLNRILKGHR 309
Query: 298 --ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
E TI+TG SGK+ ++ ++ G + S E + A+ +L++ I P
Sbjct: 310 RGEFTILTGPTGSGKTTFMSEYSLDL-AMQGVSTLWGSFEIRNVRLAKTMLQQMIGAPL- 367
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
+ ++FE+ + TF +IK V+D + A H + +V
Sbjct: 368 --DKNLEDFNRYADDFEKLPIYFM-TFH-------GQQNIKVVMDAVEHATYVHDIAHVV 417
Query: 416 IDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL 473
ID + S+ + +Q +++ + FA CHV + HPR+ N E
Sbjct: 418 IDNVQFMMGTSADSRHMDRFWTQDNIISRFRNFATKSNCHVTAIIHPRKERN--DEDLTT 475
Query: 474 YDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTG 533
I GSA + DN ++I R +QV +N+ G +G L +++++
Sbjct: 476 SSIFGSAKASQEADNVLIIQDKRLTSVRGKKYLQV----AKNRYSGDLGIMVLDFDKLSL 531
Query: 534 EY 535
Y
Sbjct: 532 SY 533
>gi|74318086|ref|YP_315826.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
gi|74057581|gb|AAZ98021.1| DnaB helicase [Thiobacillus denitrificans ATCC 25259]
Length = 466
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 118/280 (42%), Gaps = 45/280 (16%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHA 325
ID +H+ +G+ G+++G+ L+ L + PG+L IV G P+ GK+ + N+
Sbjct: 172 IDERFHK-AGEFSGVASGYGDLDRLTCGLQPGDLVIVAGRPSMGKTTLAVNIAENVAADG 230
Query: 326 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG---SAER---MTVEEFE------- 372
G V S+E AR+L+E+ + + +GG +A R M E+FE
Sbjct: 231 GVALVF-SLEMG----ARQLVERSVCR------FGGISTTAVRNGDMRQEDFERLLVAHK 279
Query: 373 --QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPV 428
QGK R D PS AKA ++H G LV+ Y +L
Sbjct: 280 RLQGK----------RLVIDDTPSTSPARMRAKARKVKHRYGRLDLVVIDYLQL--MAGD 327
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
T +E + + +K A+ V ++ R L + P L D+ S D
Sbjct: 328 GNTRSEQLGGLTRALKLMARELGAPVVLLSQLNRGLEQRTDKRPVLSDLRESGAIEQDAD 387
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+++HR D ++ +V +RK R +GT+ F
Sbjct: 388 VVLMVHRPDYYDADSPHTGLAEVLIRKQRMGPLGTVTLCF 427
>gi|237757028|ref|ZP_04585480.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
gi|237690808|gb|EEP59964.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5]
Length = 461
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 28/262 (10%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 176 GIPTGFYDLDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSVVDEVPSAFFSLEMSR 235
Query: 339 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 392
++ A +LL + K P + G E++T + A ++ +T SL
Sbjct: 236 QQIAMRLLGEESKIPLKKIRSGFLNESEIEKLTEVALKMMNAPLYIDDTASL-------- 287
Query: 393 PSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+LDL AKA L+ V+ +V+D L R V + E V+++ +K A+
Sbjct: 288 ----SILDLKAKARRLKKEKDVKIIVVDYLQLLRSHRRVENRQQE-VAEISRGLKALAKE 342
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 343 LGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQEEG 402
Query: 505 RVQVCVRKVRNKVVGTIGEAFL 526
++ + K RN GTI AF+
Sbjct: 403 LAEIIIAKQRNGPTGTIHLAFI 424
>gi|340787667|ref|YP_004753132.1| replicative DNA helicase [Collimonas fungivorans Ter331]
gi|340552934|gb|AEK62309.1| Replicative DNA helicase [Collimonas fungivorans Ter331]
Length = 466
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 117/278 (42%), Gaps = 30/278 (10%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R D G+STG+ L+++ + L G+L IV G P+ GK+ + + N+
Sbjct: 183 ERIDELYNRDNQSDITGVSTGFIDLDKMTSGLQKGDLVIVAGRPSMGKTAFSVNIGENVA 242
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
+G + SME + A ++L GS ++ G+ W
Sbjct: 243 IESGLPVAIFSMEMGGTQLAMRML--------------GSVGKLDQHRLRTGRLNDEDWP 288
Query: 379 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
T ++ + + D P++ + A+ + G GL+I Y +L +
Sbjct: 289 RLTHAIQKMNDAQLFIDETPALSSIELRARARRLSRQCGTLGLIIIDYLQLMSANNAGEN 348
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 349 RATEISEISRNLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 408
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
I+R+ +P++ ++ + K RN +G++ +F+
Sbjct: 409 FIYRDEVYNPDSQEKGTAEIIIGKQRNGPIGSVRLSFI 446
>gi|404377921|ref|ZP_10983021.1| replicative DNA helicase [Ralstonia sp. 5_2_56FAA]
gi|348616040|gb|EGY65546.1| replicative DNA helicase [Ralstonia sp. 5_2_56FAA]
Length = 473
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 190 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 245
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 246 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 291
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 292 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 351
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 352 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 411
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 412 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|317507605|ref|ZP_07965318.1| replicative DNA helicase [Segniliparus rugosus ATCC BAA-974]
gi|316254082|gb|EFV13439.1| replicative DNA helicase [Segniliparus rugosus ATCC BAA-974]
Length = 465
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 108/276 (39%), Gaps = 38/276 (13%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNS 308
E+ P+ GL DE+D+ R G G+ TG+ L+ + N PG++ IV P
Sbjct: 180 EVVPLEGLLQ--STMDELDSIATR-GGISLGVPTGFVDLDRVTNGFHPGQMVIVAARPGV 236
Query: 309 GKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE-RMT 367
GKS + + AG L S+E E KLL SAE R+
Sbjct: 237 GKSTLALDFLRACSVQAGLTSALFSLEMSKMEIVMKLL---------------SAEARIR 281
Query: 368 VEEFEQGK------AWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVI 416
+ + GK A L+ S I D P++ + AKA L RH ++ +V+
Sbjct: 282 LADMRSGKLKDDDWARLARRMSEISEAPIFIDDSPNLTMMEIRAKARRLKQRHDLKLVVV 341
Query: 417 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYD 475
D + + V + E VS+ +K A+ V ++ R + P + D
Sbjct: 342 DYLQLMTSGKKVESRQQE-VSEFSRQLKLLAKELEVPVIALSQLNRGPEQRTDKRPQVSD 400
Query: 476 ISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 506
+ S D I++HR DP G D +
Sbjct: 401 LRESGSLEQDADMVILVHRPDAFEPDDPRGGEADLI 436
>gi|241662848|ref|YP_002981208.1| replicative DNA helicase [Ralstonia pickettii 12D]
gi|309782226|ref|ZP_07676955.1| replicative DNA helicase [Ralstonia sp. 5_7_47FAA]
gi|240864875|gb|ACS62536.1| replicative DNA helicase [Ralstonia pickettii 12D]
gi|308918997|gb|EFP64665.1| replicative DNA helicase [Ralstonia sp. 5_7_47FAA]
Length = 462
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 235 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 401 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 445
>gi|33593747|ref|NP_881391.1| replicative DNA helicase [Bordetella pertussis Tohama I]
gi|33597060|ref|NP_884703.1| replicative DNA helicase [Bordetella parapertussis 12822]
gi|33600904|ref|NP_888464.1| replicative DNA helicase [Bordetella bronchiseptica RB50]
gi|384205035|ref|YP_005590774.1| replicative DNA helicase [Bordetella pertussis CS]
gi|408414653|ref|YP_006625360.1| DNA helicase [Bordetella pertussis 18323]
gi|410420898|ref|YP_006901347.1| DNA helicase [Bordetella bronchiseptica MO149]
gi|410472469|ref|YP_006895750.1| DNA helicase [Bordetella parapertussis Bpp5]
gi|412338909|ref|YP_006967664.1| DNA helicase [Bordetella bronchiseptica 253]
gi|427815392|ref|ZP_18982456.1| DNA helicase [Bordetella bronchiseptica 1289]
gi|427819658|ref|ZP_18986721.1| DNA helicase [Bordetella bronchiseptica D445]
gi|427824869|ref|ZP_18991931.1| DNA helicase [Bordetella bronchiseptica Bbr77]
gi|33563820|emb|CAE43064.1| DNA helicase [Bordetella pertussis Tohama I]
gi|33566511|emb|CAE37767.1| DNA helicase [Bordetella parapertussis]
gi|33568504|emb|CAE32416.1| DNA helicase [Bordetella bronchiseptica RB50]
gi|332383149|gb|AEE67996.1| replicative DNA helicase [Bordetella pertussis CS]
gi|401776823|emb|CCJ62062.1| DNA helicase [Bordetella pertussis 18323]
gi|408442579|emb|CCJ49130.1| DNA helicase [Bordetella parapertussis Bpp5]
gi|408448193|emb|CCJ59874.1| DNA helicase [Bordetella bronchiseptica MO149]
gi|408768743|emb|CCJ53513.1| DNA helicase [Bordetella bronchiseptica 253]
gi|410566392|emb|CCN23953.1| DNA helicase [Bordetella bronchiseptica 1289]
gi|410570658|emb|CCN18851.1| DNA helicase [Bordetella bronchiseptica D445]
gi|410590134|emb|CCN05213.1| DNA helicase [Bordetella bronchiseptica Bbr77]
Length = 457
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 114/281 (40%), Gaps = 38/281 (13%)
Query: 265 DEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR S D G+ TG+ L+++ + L G+L IV G P+ GK+ + NI
Sbjct: 179 ERIDELYHRESESDVTGVPTGFADLDKMTSGLQAGDLVIVAGRPSMGKTSF----SMNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS + GK
Sbjct: 235 EHVAIEQGLPVAVFSMEMGAVQLAMRML--------------GSVGMLDQHRMRTGKLVA 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 281 DDWPRVTHAVQLMQDAQVYIDETPALSSMEVRARARRLARQCGQLGLIIIDYLQLMSANS 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C + ++ R L + P + D+ S
Sbjct: 341 AGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 401 DVILFIYRDEVYNPDSPDKGSAEIIIGKQRNGPIGTVRLTF 441
>gi|333984426|ref|YP_004513636.1| replicative DNA helicase [Methylomonas methanica MC09]
gi|333808467|gb|AEG01137.1| replicative DNA helicase [Methylomonas methanica MC09]
Length = 464
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 26/275 (9%)
Query: 265 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 323
D+I+ Y + GD G STG+ L+E + L P +L IV G P+ GK+ + N+
Sbjct: 183 DKIEMLYEQ-DGDITGASTGFTDLDEKTSGLQPADLIIVAGRPSMGKTTIAMNMAENVAL 241
Query: 324 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKAW 377
+G + SME A +++ + + G + R+T + + K +
Sbjct: 242 KSGMPVAVFSMEMPGEALAMRMMSSLGRIDQHKVRTGKLDDDDWPRLTSAINLLAETKLF 301
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437
+ +T +L E V A+ HG GL++ Y +L + +S
Sbjct: 302 IDDTPALTPTE---------VRSRARRLTREHGQLGLIVLDYLQLMQSPSSGDNRVQQIS 352
Query: 438 QMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
+ +K A+ V ++ R L + P + D+ S D I ++R
Sbjct: 353 DISRGLKALAKEMNVPVIALSQLNRNLEQRPNKRPVMSDLRESGAIEQDADLIIFVYRDE 412
Query: 495 --NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
N D P+ G +V + K RN +GT+ FL
Sbjct: 413 VYNEDSPDKGI---AEVIIGKQRNGPLGTVRLTFL 444
>gi|299067363|emb|CBJ38562.1| replicative DNA helicase [Ralstonia solanacearum CMR15]
Length = 472
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 350
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 410
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 455
>gi|187928275|ref|YP_001898762.1| replicative DNA helicase [Ralstonia pickettii 12J]
gi|187725165|gb|ACD26330.1| replicative DNA helicase [Ralstonia pickettii 12J]
Length = 462
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 118/291 (40%), Gaps = 44/291 (15%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 179 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 235 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL++ Y +L
Sbjct: 281 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIVIDYLQLMSGSG 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 341 SGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 401 DVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 445
>gi|397669073|ref|YP_006510608.1| replicative DNA helicase [Propionibacterium propionicum F0230a]
gi|395141819|gb|AFN45926.1| replicative DNA helicase [Propionibacterium propionicum F0230a]
Length = 454
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 126/323 (39%), Gaps = 30/323 (9%)
Query: 234 LMYLGPGALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEF-G 280
L Y G G + ++V+ A+ L+ + G DY FDE++A + SGD G
Sbjct: 132 LGYQGQGEVDKIVDEAQQTLFEVTGSRASEDYQSLNDLMEPTFDEMEAIAN--SGDALSG 189
Query: 281 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ TG+ L+ L N L PG++ IV P GKS + + H V S+E
Sbjct: 190 VPTGFNELDSLTNGLHPGQMIIVAARPGVGKSTFALDVCRAAAIHHDLATVFFSLEMSRT 249
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
E K+L P + GG + + LS I D P++ +
Sbjct: 250 EIVMKILSAEASVP-LQKIRGGRMDENDWQRITDRSVTLSGKPLFI----DDSPNLTMME 304
Query: 400 DLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
AKA L R+ ++ + ID + + V + E VS+ +K A+ V +
Sbjct: 305 IRAKARRLKQRNNLQLICIDYIQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEVPVIAL 363
Query: 458 AH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID--RVQVC--VRK 512
+ R P L D+ S D I++HR P D R Q + K
Sbjct: 364 SQLSRNAEQRKDGVPQLADLRESGSLEQDADIVIMLHRPELYTQNPTDEERGQAAFHILK 423
Query: 513 VRNKVVGTIGEAFLS-YNRVTGE 534
RN + I F Y+R T +
Sbjct: 424 HRNGQLDKIDALFQGHYSRFTNQ 446
>gi|399020806|ref|ZP_10722930.1| replicative DNA helicase [Herbaspirillum sp. CF444]
gi|398093772|gb|EJL84146.1| replicative DNA helicase [Herbaspirillum sp. CF444]
Length = 468
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 33/281 (11%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R ++ D G+ TG+ L+++ + L PG+L IV G P+ GK+ + + N+
Sbjct: 182 ERIDELYNRDSTSDITGVPTGFIDLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGENVA 241
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
+G + SME + A ++L GS R+ G+ W
Sbjct: 242 IDSGLPVAVFSMEMGGAQLAMRML--------------GSVGRLDQHRLRTGRLIDEDWP 287
Query: 379 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL---DHQRPV 428
T ++ + + D P++ + ++ + G GL+I Y +L +
Sbjct: 288 RLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGGNS 347
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
+ +S++ +K A+ C V ++ R L + P + D+ S D
Sbjct: 348 GENRASEISEISRSLKGLAKELNCPVIALSQLNRALEQRPNKRPVMSDLRESGAIEQDAD 407
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ I+R+ +P++ ++ + K RN +G+I AFL
Sbjct: 408 VILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLAFL 448
>gi|332283722|ref|YP_004415633.1| replicative DNA helicase [Pusillimonas sp. T7-7]
gi|330427675|gb|AEC19009.1| replicative DNA helicase [Pusillimonas sp. T7-7]
Length = 460
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 34/279 (12%)
Query: 265 DEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + L G+L IV G P+ GK+ + NI
Sbjct: 182 ERIDELYHREGDSDVTGVPTGFADLDRMTSGLQAGDLVIVAGRPSMGKTSF----SMNIG 237
Query: 323 EHA----GWKFVLCSMENKVREHARK------LLEKH-IKKPFFEANYGGSAERMT--VE 369
EH G + SME + A + +L++H ++ A+ R+T V+
Sbjct: 238 EHVAIEQGLPVAVFSMEMGAVQLAMRMVGSVGMLDQHRMRTGKLTAD---DWPRLTHAVQ 294
Query: 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS 429
+ ++ + ++ T +L E V A+ + G G++I Y +L
Sbjct: 295 QVQEAQIYIDETPALTSME---------VRARARRLARQCGQLGMIIIDYMQLMSGSSSG 345
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ +S++ +K A+ C + ++ R L + P + D+ S D
Sbjct: 346 ENRATEISEISRSLKSLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 405
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ I+R+ +P++ ++ V K RN +GT+ F
Sbjct: 406 ILFIYRDEVYNPDSPDKGTAEIIVGKQRNGPIGTVRLTF 444
>gi|339507761|gb|AEJ81324.1| DNA primase/helicase [Erwinia phage vB_EamM-M7]
Length = 637
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 98/472 (20%), Positives = 176/472 (37%), Gaps = 40/472 (8%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKL 136
G+ V FP + K +DF+ ++F +G + I EGE++ +
Sbjct: 137 GYRVRHRFPDDYKKPELRGKLKDFSGGVGDISGELQLFGSQRHAKGGKRLFIWEGEIESM 196
Query: 137 SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
+ A L + V + ++PS + + + Y+ I + D D
Sbjct: 197 T---ADLLTSMIVEKNRRKHYAHTSLPS---GANIKGIKDNYQYITSFEEIYICADNDEA 250
Query: 197 GQALAEELARRVGRERCWRVRWPKK-NDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
G E AR + E+ ++P+ D+ + ++ + K + NAE Y
Sbjct: 251 GAKFMREAARILPIEKVRIFQYPENIKDLSDWWKGSQKKRKVMLDEFKHRLYNAERYCPA 310
Query: 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEW 313
G+ NF D +D A +R + LN L GE+T + + GKS +
Sbjct: 311 GIKNFADGYD---AMKNRGKVPLIPFPESFGDLNALTFGGYGKGEITTIAAPSSVGKSAF 367
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+I K + E+ E L H+ K E Y + +E ++
Sbjct: 368 TREMIYTAFTQTDEKIGVIPCEDTYEELMEMLCSVHLSKQISEIPY----DERNWDEIKE 423
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
LS + ++ +L+ V G +++DP +S+ ET
Sbjct: 424 AHKQLSEGRRINIVDHQGAIDQDNLLEFIDYLVGAMGCGVIILDPVT-----LALSKAET 478
Query: 434 ---EYVSQMLTMVKRFAQHH--ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
E +S++L KR H CHV + ++ ++ G+ DI GS + N
Sbjct: 479 DEEEVLSEILRRCKRLGYAHVNVCHVRKNSGGQKANSEGGDVAE-EDIKGSGAYFQISMN 537
Query: 489 GIVIHRNRDPEAGPIDRVQVCVRKVR-------NKVVGTIGEAFLSYNRVTG 533
+++ RN+ DRV+ + K++ K G G A+ Y+ TG
Sbjct: 538 NLILTRNKVDS----DRVRKNITKIKLTKCRRHGKSTGIAGYAY--YDGETG 583
>gi|6573520|pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
gi|6573521|pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
gi|6573522|pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
gi|6573523|pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
Length = 296
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 31/252 (12%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 94
Query: 357 ANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
++ S +R +E +F+Q + + ++TF L DS + LAK A +R G+
Sbjct: 95 SD---SLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKLAYMRSGLG 147
Query: 413 GLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----Q 462
VI LDH V E + + ++T +K FA+ + + H + +
Sbjct: 148 CDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGK 203
Query: 463 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 522
H G P ++ D+ GS D I + RN+ + + V VR ++ + G G
Sbjct: 204 AHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTG 258
Query: 523 EA-FLSYNRVTG 533
A ++ YN+ TG
Sbjct: 259 IAGYMEYNKETG 270
>gi|9257129|pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257130|pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257131|pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257132|pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257133|pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257134|pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
gi|9257135|pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
gi|9257136|pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
gi|9257137|pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
gi|9257138|pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
gi|9257139|pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
gi|9257140|pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
Length = 289
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 45 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 104
Query: 357 ANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLDLAKAA 405
++ S +R +E +F+Q W F S E D L LAK A
Sbjct: 105 SD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--------LAKLA 150
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
+R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 151 YMRSGLGCDVII----LDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 206
Query: 461 R-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 207 KNPDKGKAHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKC 261
Query: 516 KVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 262 RFTGDTGIAGYMEYNKETG 280
>gi|371785557|emb|CCA66303.1| putative DNA primase/helicase [Erwinia phage phiEa116]
Length = 799
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 98/472 (20%), Positives = 176/472 (37%), Gaps = 40/472 (8%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKL 136
G+ V FP + K +DF+ ++F +G + I EGE++ +
Sbjct: 137 GYRVRHRFPDDYKKPELRGKLKDFSGGVGDISGELQLFGSQRHAKGGKRLFIWEGEIESM 196
Query: 137 SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
+ A L + V + ++PS + + + Y+ I + D D
Sbjct: 197 T---ADLLTSMIVEKNRRKHYAHTSLPS---GANIKGIKDNYQYITSFEEIYICADNDEA 250
Query: 197 GQALAEELARRVGRERCWRVRWPKK-NDVDHFKDANEVLMYLGPGALKEVVENAELYPIM 255
G E AR + E+ ++P+ D+ + ++ + K + NAE Y
Sbjct: 251 GAKFMREAARILPIEKVRIFQYPENIKDLSDWWKGSQKKRKVMLDEFKHRLYNAERYCPA 310
Query: 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEW 313
G+ NF D +D A +R + LN L GE+T + + GKS +
Sbjct: 311 GIKNFADGYD---AMKNRGKVPLIPFPESFGDLNALTFGGYGKGEITTIAAPSSVGKSAF 367
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+I K + E+ E L H+ K E Y + +E ++
Sbjct: 368 TREMIYTAFTQTDEKIGVIPCEDTYEELMEMLCSVHLSKQISEIPY----DERNWDEIKE 423
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
LS + ++ +L+ V G +++DP +S+ ET
Sbjct: 424 AHKQLSEGRRINIVDHQGAIDQDNLLEFIDYLVGAMGCGVIILDPVT-----LALSKAET 478
Query: 434 ---EYVSQMLTMVKRFAQHH--ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
E +S++L KR H CHV + ++ ++ G+ DI GS + N
Sbjct: 479 DEEEVLSEILRRCKRLGYAHVNVCHVRKNSGGQKANSEGGDVAE-EDIKGSGAYFQISMN 537
Query: 489 GIVIHRNRDPEAGPIDRVQVCVRKVR-------NKVVGTIGEAFLSYNRVTG 533
+++ RN+ DRV+ + K++ K G G A+ Y+ TG
Sbjct: 538 NLILTRNKVDS----DRVRKNITKIKLTKCRRHGKSTGIAGYAY--YDGETG 583
>gi|291335902|gb|ADD95497.1| T7-like primase/helicase [uncultured phage MedDCM-OCT-S08-C41]
Length = 408
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 100/422 (23%), Positives = 169/422 (40%), Gaps = 71/422 (16%)
Query: 123 ESDIIIVEGEMDKLSMEEAG-FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
E ++IVEGEMD +S+ EA + VS+P+GA + +KK + + Y W +
Sbjct: 12 EQKLVIVEGEMDAMSVWEAQPNWSVVSIPNGA--AAAKKAI-------QNNYEW-----I 57
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKK---NDVDHFKDANEVLMYLG 238
+++L D D GQ A++ A V P K ++ +KDA+E L
Sbjct: 58 NYYDKVVLFFDNDEAGQKAAKDAA---------GVLPPGKVFIGFLEDYKDASEALQAGD 108
Query: 239 PGALKEVVENAEL-YPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLP 296
A++ V L Y G+ + + D I + D ++ L +L+ +
Sbjct: 109 SEAVRAVCNYDHLQYQPDGIVDAKTLLDLITTPSPPSDHD-----YPFQGLQGKLHGIRY 163
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GEL +T GKS + A+ ++ G + ++E +R + L+ KP
Sbjct: 164 GELVTITAGSGIGKSSFCRAIATDLLTK-GERVGYLALEESMRHTSLGLMSNACGKPL-- 220
Query: 357 ANYGGSAERMTVEEF--EQGKAWLSNTFSLI----------RCENDSLPSIKWVLDLAKA 404
+ G +R + E E W + F R E + V+ L
Sbjct: 221 --HLGEQQRSDLTEIFDETIAKWNLHLFDGFGSYDPDHIYNRIEYMAAGLDTKVIFLDHL 278
Query: 405 AVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR--FAQHHACHVWFVAHPRQ 462
++L G+ G D +R + T T ++ ++V+R A CH P
Sbjct: 279 SILLSGLEG---------DERRMIDTTMT----KLRSLVERTGIALFLVCHT--TTPPNG 323
Query: 463 LHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIG 522
+ G L + GS D+ VI RD ++G +R VR ++N+ G +G
Sbjct: 324 QSHEEGGRVQLRSLRGSRSVGQLSDS--VIALERDQQSGS-ERDSTTVRVLKNRYSGEVG 380
Query: 523 EA 524
EA
Sbjct: 381 EA 382
>gi|440703533|ref|ZP_20884465.1| replicative DNA helicase [Streptomyces turgidiscabies Car8]
gi|440274915|gb|ELP63394.1| replicative DNA helicase [Streptomyces turgidiscabies Car8]
Length = 491
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 130/313 (41%), Gaps = 34/313 (10%)
Query: 236 YLGPGALKEVVENA--ELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGIST 283
Y G + E+V +A E+Y + DY DEI+A R SG+ G+ T
Sbjct: 177 YAADGDVDEIVNSAQAEIYAVTEQRTTEDYLPLGDIMEGALDEIEAIGSR-SGEMTGVPT 235
Query: 284 GWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVRE 340
G+ L++L N L PG++ I+ P GKS +D A C+I + V+ S+E E
Sbjct: 236 GFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MPSVIFSLEMGRNE 293
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
A +LL + G MT E++ + + + + +DS P++ +
Sbjct: 294 IAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYIDDS-PNLSMMEI 348
Query: 401 LAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
AK L R ++ ++ID + S++ + VS M +K A+ V ++
Sbjct: 349 RAKCRRLKQRADLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLLAKELELPVIALS 408
Query: 459 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRK 512
R + P + D+ S D I++HR P AG D + V K
Sbjct: 409 QLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRAGEAD---IIVGK 465
Query: 513 VRNKVVGTIGEAF 525
RN TI AF
Sbjct: 466 HRNGPTATITVAF 478
>gi|395763379|ref|ZP_10444048.1| replicative DNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 461
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 116/287 (40%), Gaps = 30/287 (10%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y R + E G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 179 ERIDELYSRDNQSEITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKTAFSVNIGENVA 238
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
+G + SME + A ++L GS ++ G+ W
Sbjct: 239 IDSGLPVAVFSMEMGGAQLAMRML--------------GSVGQLDQHRLRTGRLNDEDWP 284
Query: 379 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 285 RLTNAIQKMNDAQLYIDETPALNSIELRARSRRLSRQCGKLGLIIVDYLQLMSANTPGDN 344
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+S++ +K A+ C V ++ R L + P + D+ S D +
Sbjct: 345 RASEISEISRGLKGLAKELGCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVIL 404
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
I+R+ +P++ ++ + K RN +G+I F+ G Y
Sbjct: 405 FIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLTFMGQYTKFGNY 451
>gi|373456225|ref|ZP_09547992.1| replicative DNA helicase [Caldithrix abyssi DSM 13497]
gi|371717889|gb|EHO39660.1| replicative DNA helicase [Caldithrix abyssi DSM 13497]
Length = 476
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 116/280 (41%), Gaps = 29/280 (10%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
F+ ID YH + G+ +G+ L++L L P +L I+ G P+ GK+ + L N
Sbjct: 187 FERIDKLYHSSVSGVTGVPSGYTKLDQLTAGLQPSDLVILAGRPSMGKTAFALNLARNAA 246
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G + S+E A +LL K G + T EE ++ S
Sbjct: 247 IEHGIPVGIFSLEMSSDSLAMRLLCTEAKVNIMSVRTG----KFTKEEMDRLTEHASKLM 302
Query: 383 SLIRCENDSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQM 439
+ +DS P++ VL+L AKA L+ H ++ LVID ++ + Q E ++S+
Sbjct: 303 TAPIFIDDS-PAMN-VLELRAKARRLKAEHNIQLLVIDYLQLMEGKGDNRQQEITHISRS 360
Query: 440 LTMVKRFAQHHACHVWFVAHPRQLHNWV-----GEPPNLYDISGSAHFINKCDNGIVIHR 494
L K A+ V ++ QL V + P L D+ S D + ++R
Sbjct: 361 L---KGIAKELDVPVLALS---QLSRAVETRDKSKKPQLSDLRESGSIEQDADVVMFVYR 414
Query: 495 N--------RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + ++ + K RN GT+ +FL
Sbjct: 415 PEYYGIMEFEDTGQSTHNMCEIIIGKQRNGPTGTVRLSFL 454
>gi|170723116|ref|YP_001750804.1| DnaB domain-containing protein [Pseudomonas putida W619]
gi|169761119|gb|ACA74435.1| DnaB domain protein helicase domain protein [Pseudomonas putida
W619]
Length = 460
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 112/270 (41%), Gaps = 30/270 (11%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNIN 322
D IDA ++ T G+STG L N L + PG + +V G+P SGK+ + +I
Sbjct: 162 IDGIDARFNGTV--SRGLSTGIPDLDNILCGLRPGHMIVVAGLPGSGKTILGQQIAQHIT 219
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAW--LS 379
G ++ S+E E A + + A+ G + R+ Q W ++
Sbjct: 220 VSLGHAGLMFSLEMTKEELAARGI----------ASLGAVNLSRIDAGNTLQDDDWPKIT 269
Query: 380 NTFSLIR----CEND----SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ SL+ ND ++P I+ + A+ R G+ LV+D + + SQ
Sbjct: 270 SAVSLLNRARLYANDQAGMTMPRIRSI---ARQCQKREGLDVLVVDYLTLIASES--SQN 324
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
V ++ T +K A+ V +A R N + P D+ S D I
Sbjct: 325 RALEVGKISTSLKNLAKELGVPVIVLAQLNRGPANRPDKRPRPSDLRDSGQIEQDADAVI 384
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
++HR+ D E G ++ V K R+ GT
Sbjct: 385 LVHRDPDSEEGQNGVTELIVGKCRHGKPGT 414
>gi|219681354|ref|YP_002456118.1| putative DNA primase/helicase [Erwinia phage phiEa21-4]
gi|327198483|ref|YP_004327071.1| replicative DNA helicase, DnaB-like [Erwinia phage phiEa104]
gi|199580621|gb|ACH89008.1| putative DNA primase/helicase [Erwinia phage phiEa21-4]
gi|311875179|emb|CBX44439.1| replicative DNA helicase, DnaB-like [Erwinia phage phiEa104]
Length = 637
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 101/473 (21%), Positives = 178/473 (37%), Gaps = 42/473 (8%)
Query: 77 GHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKL 136
G+ V FP + K +DF+ ++F +G + I EGE++ +
Sbjct: 137 GYRVRHRFPDDYKKPELRGKLKDFSGGVGDISGELQLFGSQRHPKGGKRLFIWEGEIESM 196
Query: 137 SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP 196
+ A L + V + ++PS + + + Y+ I + D D
Sbjct: 197 T---ADLLTSMIVEKNRRKHYAHTSLPS---GANIKGIKDNYQYITSFEEIYICADNDEA 250
Query: 197 GQALAEELARRVGRERCWRVRWPK--KNDVDHFKDANEVLMYLGPGALKEVVENAELYPI 254
G E AR + E+ ++P+ K+ D +K + + + K + NAE Y
Sbjct: 251 GAKFMREAARILPIEKVRIFQYPENVKDLSDWWKGSQKKRKAMLE-EFKHRLYNAERYCP 309
Query: 255 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSE 312
G+ NF D FD A +R + LN L GE+T + + GKS
Sbjct: 310 AGIKNFADGFD---AMKNRGKVPLIPFPESFGDLNALTFGGYGKGEITTIAAPSSVGKSA 366
Query: 313 WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372
+ +I K + E+ E L H+ K E Y + +E +
Sbjct: 367 FTREMIYTAFTQTDEKIGVIPCEDTYEELMEMLCSVHLSKQISEIPY----DERNWDEIK 422
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432
+ LS + ++ +L+ V G +++DP +S+ E
Sbjct: 423 EAHKQLSEGRRINIVDHQGAIDQDNLLEFIDYLVGAMGCGVIILDPVT-----LALSKAE 477
Query: 433 T---EYVSQMLTMVKRFAQHH--ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487
T E +S++L KR H CHV + ++ ++ G+ DI GS +
Sbjct: 478 TDEEEVLSEILRRCKRLGYAHVNVCHVRKNSGGQKANSEGGDVAE-EDIKGSGAYFQISM 536
Query: 488 NGIVIHRNRDPEAGPIDRVQVCVRKVR-------NKVVGTIGEAFLSYNRVTG 533
N +++ RN+ DRV+ + K++ K G G A+ Y+ TG
Sbjct: 537 NNLILTRNKVDS----DRVRKNITKIKLTKCRRHGKSTGIAGYAY--YDGETG 583
>gi|266625053|ref|ZP_06117988.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288863056|gb|EFC95354.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 680
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 102/230 (44%), Gaps = 32/230 (13%)
Query: 277 DEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
+EF I TG ++E + + G ++ ++G+ +GKS I L E G++ L S E
Sbjct: 381 EEF-IKTGIDTIDEKMRGLKKGFVSCLSGLRAAGKSSVISQLTIEAAEQ-GYRTALFSGE 438
Query: 336 NKVREHARKLL-----EKHIKKPFFEANYG-GSAERMTVEEFEQGKAWL-----SNTFSL 384
K + + LL ++++ + ++ Y S + ++ K W+ N F L
Sbjct: 439 LKPKNLLKWLLLQAAGKQYVSQTQYDYYYVVRSPYDEIISKWLDEKVWVYNNYYGNNFGL 498
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
I + + V H V +++D L+ + + + S + ++
Sbjct: 499 IMTQ-------------IRKCVTEHKVDLVILDNMMALNLME-MGSDKYQQQSHFVESLE 544
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+A+ H+ FVAHPR+ ++ L D+SGS +N+ DN ++HR
Sbjct: 545 DYAKQANIHILFVAHPRKSTGFL----RLDDVSGSNDIVNRVDNAFILHR 590
>gi|398833248|ref|ZP_10591385.1| replicative DNA helicase [Herbaspirillum sp. YR522]
gi|398221908|gb|EJN08303.1| replicative DNA helicase [Herbaspirillum sp. YR522]
Length = 481
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 40/284 (14%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y+R + D G+ TG+ L+++ + L PG+L IV G P+ GK+ A NI
Sbjct: 196 ERIDELYNRDNTSDITGVPTGFIDLDKMTSGLQPGDLIIVAGRPSMGKT----AFSINIG 251
Query: 323 E----HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
E +G + SME + A ++L GS R+ G+
Sbjct: 252 ETVAIESGLPVAVFSMEMGGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 297
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 298 EDWPRLTHAIQKMNDAQFYIDETPALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNG 357
Query: 428 VSQTETEY--VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
S +E +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 358 GSSSENRASEISEISRSLKGLAKELNCPVIALSQLNRALEQRPNKRPVMSDLRESGAIEQ 417
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +G+I +FL
Sbjct: 418 DADVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSIRLSFL 461
>gi|324998554|ref|ZP_08119666.1| replicative DNA helicase [Pseudonocardia sp. P1]
Length = 470
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 132/317 (41%), Gaps = 36/317 (11%)
Query: 240 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 287
G ++EVV+ A+ +Y + DY DEIDA + G G+ TG+
Sbjct: 161 GEVEEVVDRAQAAVYEVTERTTTEDYTVLEELLQPTMDEIDAIASQ-GGMAAGVPTGFAD 219
Query: 288 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 344
L+ + N L PG++ +V P GKS +D A C+I G S+E E +
Sbjct: 220 LDAVTNGLHPGQMVVVAARPGLGKSTLGLDFARSCSIKN--GMTSAFFSLEMSKSEIVMR 277
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
LL + + G RM+ E++ + +S +DS P++ + AKA
Sbjct: 278 LLSAEARIRLADMRAG----RMSDEDWTRMARRMSEISEAPLYIDDS-PNLTLMEIRAKA 332
Query: 405 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461
+ R+ ++ +++D + R V + E VS+ +K A+ V ++ R
Sbjct: 333 RRMKQRNDLKLIILDYLQLMTSGRKVESRQQE-VSEFSRQIKLIAKELEVPVVAMSQLNR 391
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNK 516
+ P L D+ S D +++HR DP AG D + + K RN
Sbjct: 392 GPEQRTDKRPMLSDLRESGSIEQDADMVVLLHRPDAFEQDDPRAGEAD---LILAKHRNG 448
Query: 517 VVGTIGEAF-LSYNRVT 532
TI A L Y+R +
Sbjct: 449 PTTTITVAHQLHYSRFS 465
>gi|227502167|ref|ZP_03932216.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
gi|306834724|ref|ZP_07467791.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
gi|227076991|gb|EEI14954.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725]
gi|304569395|gb|EFM44893.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726]
Length = 477
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 119/287 (41%), Gaps = 35/287 (12%)
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGV 305
+ AE Y ++G DE+ A + G E G+ TG+ L++L N L G++ IV
Sbjct: 188 KTAEDYRVLGDL-IDPTIDEL-AALQQAGGVELGVPTGFIDLDKLTNGLHAGQMIIVAAR 245
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
P GKS I + + G V+ S+E E +LL + + GG
Sbjct: 246 PGVGKSTLAMDFIRSCSLQHGKSSVIFSLEMSASEIVMRLLSAESEVKLTDMRSGG---- 301
Query: 366 MTVEEFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYN 420
++ E++ A + +T + I+ D P++ + +KA L+ HG+ +V+D
Sbjct: 302 VSTEDW----AKIDDTLNRIQDAPLFIDDSPNLTMMEIRSKARRLKQQHGLDLIVLDYLQ 357
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS 479
+ + V + E VS+ +K A+ V ++ R + P L D+ S
Sbjct: 358 LMSSGKKVESRQQE-VSEFSRQLKLLAKELEVPVIAISQLNRGPEARNDKKPQLADLRES 416
Query: 480 AHFINKCDNGIVIHR----NRDPE-------------AGPIDRVQVC 509
D ++++R +RD E GPID VQV
Sbjct: 417 GSLEQDADMVMLLYRPDSQDRDNERAGEADIILAKHRGGPIDTVQVA 463
>gi|428314852|ref|YP_007118870.1| replicative DNA helicase [Oscillatoria nigro-viridis PCC 7112]
gi|428244887|gb|AFZ10671.1| replicative DNA helicase [Oscillatoria nigro-viridis PCC 7112]
Length = 451
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 111/274 (40%), Gaps = 21/274 (7%)
Query: 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICN 320
Y DEI+ T+ GISTG+ L++L GEL ++ G P SGK+ AL N
Sbjct: 174 YLDEIEEQRLETANYCPGISTGFYDLDDLLGGGFYRGELIVIGGRPGSGKTALACALGYN 233
Query: 321 INEHA-GWKFVLCSMENKVREHARKL--LEKHIK-KPFFEANYGGSAERM--TVEEFEQG 374
I + ++ SME R+ A +L LE + K + N G E + + +
Sbjct: 234 IASLPRNGRVLMFSMEMPGRDLAARLMALESGVSVKDIRQVNLAGKYEVLASALGKVSDA 293
Query: 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434
W+ + PS + + V G GLVI Y +L +
Sbjct: 294 DFWIDESLE---------PSPLEIRSRVREFVCERGPLGLVIVDYLQL-MVNSADENFVN 343
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
+S++ +K A+ V ++ R + + P+L D+ GS D + ++
Sbjct: 344 KISEITRQMKILAREVDTPVVLLSQLNRGVETRTNKRPSLSDLRGSGGIEQDADVVLGVY 403
Query: 494 RNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
R+ +P++ ++ K RN GT+ F
Sbjct: 404 RDDYYNPDSPDRGIAEIIGLKGRNSGTGTVKLLF 437
>gi|410728212|ref|ZP_11366393.1| replicative DNA helicase [Clostridium sp. Maddingley MBC34-26]
gi|410597151|gb|EKQ51784.1| replicative DNA helicase [Clostridium sp. Maddingley MBC34-26]
Length = 431
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 113/247 (45%), Gaps = 28/247 (11%)
Query: 281 ISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ TG+R + N++ ++ G L ++TG +GKS ++ + + G+K + S E
Sbjct: 160 VRTGFRDIDNKILGIVTGSLVVITGYNGNGKSTLLNQMCIAESLSQGYKVFVYSPE-LTN 218
Query: 340 EHARKLLEKHI--KKPFFEANYGGSAER-------MTVEEFEQGKAWLSNTFSLIRCEND 390
+ + + I + F E + G + M ++++ + K + I +++
Sbjct: 219 SNFKSCVYSTIANSEDFDEDEFCGEKYKKLSDRGNMLIDQWIKDKLY-------IYSDSN 271
Query: 391 SLPSIKWVL-DLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRF 446
S S K +L D+ K A +H VR +ID ++D + + EY++Q + +K+F
Sbjct: 272 STSSEKQLLRDMDKLA--KHKDVRVFIIDNLMKIDLE---GSYKNEYLAQKTFVNQLKQF 326
Query: 447 AQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 506
A + V+ VAHP++ + + +DI+G+ N D I R + +
Sbjct: 327 ATRYNALVYLVAHPKKPQER-SKVISKFDIAGTGDITNMADYVFSISRITSKDRKKNSKY 385
Query: 507 QVCVRKV 513
+ C+ K+
Sbjct: 386 RDCIIKM 392
>gi|226315503|ref|YP_002775399.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
gi|226098453|dbj|BAH46895.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599]
Length = 449
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 67/265 (25%), Positives = 115/265 (43%), Gaps = 16/265 (6%)
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
+ + GD GISTG+ L+++ L +L I+ P+ GK+ + L N+ AG
Sbjct: 175 FLSQRRGDITGISTGYTDLDKMTAGLQRSDLIILAARPSVGKTAFALNLAQNVAARAGET 234
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM-TVEEFEQGKAWLS-NTFSLIR 386
+ S+E A +L+++ I E N S R T+EE + K ++ T +
Sbjct: 235 VAIFSLEM----GASQLVQRMI---CAEGNLDASRMRSGTLEEDDWQKLTMAIGTLAKAP 287
Query: 387 CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
D P + AK L+ G+ GL++ Y +L H R + VS++ +K
Sbjct: 288 IYIDDSPGVTVQDIRAKCRRLQTERGL-GLILIDYLQLIHGRGKGDNRQQEVSEISRTLK 346
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ V ++ R + + P + DI S D ++R+ D E+
Sbjct: 347 GIARELNVPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESE 406
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAFL 526
+ ++V + K RN GT+ AFL
Sbjct: 407 NKNVIEVIIAKQRNGPTGTVELAFL 431
>gi|332853410|ref|ZP_08434729.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332870608|ref|ZP_08439350.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|417554144|ref|ZP_12205213.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|417562663|ref|ZP_12213542.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|421198867|ref|ZP_15656032.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|421455842|ref|ZP_15905186.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|421634563|ref|ZP_16075179.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|421802671|ref|ZP_16238618.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|332728616|gb|EGJ59984.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332732168|gb|EGJ63437.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|395525245|gb|EJG13334.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|395565763|gb|EJG27410.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|400212080|gb|EJO43042.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|400390561|gb|EJP57608.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|408704625|gb|EKL49990.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|410414511|gb|EKP66312.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
Length = 451
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 26/271 (9%)
Query: 280 GISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
GI TG+ L N+L + +L I+ P+ GK+ ++ +++ + G + S E
Sbjct: 183 GIKTGFFELDNKLDCIDQTDLVIIGARPSMGKTTLAQNILSDVSVNQGEPALFMSGEMNK 242
Query: 339 REHARKLLE-------KHIKKPFFEANYGGSAER-MTVEEFEQGKAWLSNTFSLIRCEND 390
+ +L+ K I+ F++ G R MT+ + NT I +
Sbjct: 243 EQIMERLISGIGQIELKKIRSGRFQSEDAGLIHRAMTI---------IGNTK--IEINDQ 291
Query: 391 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 450
S PS+ + A+ V ++G GL++ Y ++ + T+ + + +K+ A+
Sbjct: 292 SAPSLSDIRREARKMVRKYGKVGLIMVDYLQIMTPPQRTGNPTQEMGDISRGLKKLAKDF 351
Query: 451 ACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQ 507
C V ++ R L N + P + D+ S D + I+R+ + E+ +
Sbjct: 352 NCPVVALSQLNRSLENRPNKRPIMSDLRDSGQIEQDADVILFIYRDEVYNKESKDAGIAE 411
Query: 508 VCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
+ V K RN GT+G L+ + ++D+
Sbjct: 412 IIVGKARN---GTVGTVRLATDLARSTFLDL 439
>gi|451812224|ref|YP_007448678.1| replicative DNA helicase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778126|gb|AGF49074.1| replicative DNA helicase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 453
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 121/296 (40%), Gaps = 44/296 (14%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 307
E+ P++ + +D YHR D G+ TG+ L+++ + L PGEL +V G P+
Sbjct: 168 EIQPLLA-----QVVERMDELYHREGDTDITGVPTGFIDLDKMTSGLQPGELIVVAGRPS 222
Query: 308 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAVFSMEMGATQLAMRML--------------GSI 264
Query: 364 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 412
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEADWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 472 NLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ D+ S D + I+R+ + ++ ++ + K RN +GT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGTAEIIIGKQRNGPIGTVKLTF 439
>gi|404493638|ref|YP_006717744.1| replicative DNA helicase [Pelobacter carbinolicus DSM 2380]
gi|77545674|gb|ABA89236.1| replicative DNA helicase [Pelobacter carbinolicus DSM 2380]
Length = 456
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 25/284 (8%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
+D I+ YHR G+STG+ L+E+ L P +L IV G P+ GK+ ++ L+
Sbjct: 165 MKDTIQIIEDLYHRKEL-VTGVSTGYTVLDEMTAGLQPSDLVIVAGRPSMGKTAFVLNLV 223
Query: 319 CNINEHAGWKF--VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
N A V+ S+E ++LL + G E + +G +
Sbjct: 224 ENAAVRASEPVPTVVFSLEMSKESLVQRLLCSLARVDAGRLRTGNLVES-DWPKLIEGAS 282
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETE 434
LS I D P+I + AKA L+ H + G+V+ Y +L Q S++ +
Sbjct: 283 KLSEAPVFI----DDTPAITVMELRAKARRLKAEHNL-GMVVVDYLQL-MQGHNSESRQQ 336
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
+S++ +K A+ V ++ R L N + P + D+ S D + I+
Sbjct: 337 EISEISRSLKALAKEINVPVLALSQLNRSLENRTDKRPIMADLRESGAIEQDADVIMFIY 396
Query: 494 R-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
R R E G ++ + K RN +GT+ FL
Sbjct: 397 REAVYCDDCRSKERTCEKGHDKDAEIIIGKQRNGPIGTVHLTFL 440
>gi|438000021|ref|YP_007183754.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812950|ref|YP_007449403.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339255|gb|AFZ83677.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778919|gb|AGF49799.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 453
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 122/299 (40%), Gaps = 50/299 (16%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSG-DEFGISTGWRALNELYNVL-PGELTIVTGVPN 307
E+ P++ + ID YHR D G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLA-----QVVERIDDLYHREGDTDITGVPTGFIDLDKITSGLQPGDLIVVAGRPS 222
Query: 308 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
GK+ A NI E+ G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEYVAIEHGLPVAIFSMEMGASQLAMRML--------------GSI 264
Query: 364 ERMTVEEFEQGKA----WLSNTFSL-----IRCENDSLPSIKWVLDLAKAAVLRH--GVR 412
++ + GK W T ++ I+ D P++ + AK L G
Sbjct: 265 SKVDQHKMRTGKLSEEDWPKITDAIQAMQDIQLYIDETPALNVIEVKAKTRRLSRQCGQL 324
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
GL+I Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLIIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELDCPLIALSQLNRSLEQRQNKRP 383
Query: 472 NLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ D+ S D + I+R N+D E G ++ + K RN +GT+ F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEFYNQDSQEKGT---AEIIIGKQRNGPIGTVKLTF 439
>gi|254516847|ref|ZP_05128905.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
gi|219674352|gb|EED30720.1| replicative DNA helicase [gamma proteobacterium NOR5-3]
Length = 344
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 113/271 (41%), Gaps = 23/271 (8%)
Query: 274 TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332
+ GD G++TG+ L+++ + L +L IV G P+ GK+ + L+ N H ++
Sbjct: 74 SGGDITGLTTGYVDLDKMTSGLQKSDLVIVAGRPSMGKTAFAMNLVENAVLHQPDPVLVF 133
Query: 333 SMENKVREHARKLLEK--HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390
SME +LL I + G ++ E L NT LI D
Sbjct: 134 SMEMPAEALMMRLLSSIGRIDQTLVRT---GRLDQAGWESLSHAVGKLKNTGLLI----D 186
Query: 391 SLPSIKWVLDLAKAAVLRH---GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447
P++ ++A ++ G+ ++ID Y +L S+ T +S++ +K A
Sbjct: 187 DTPALTPTEVRSRARRVKREYGGIAMIMID-YMQLMQVAGASEGRTAEISEISRSLKAIA 245
Query: 448 QHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPID 504
+ C V ++ R L + P D+ S D + I+R+ +P++
Sbjct: 246 KEFRCPVVALSQLNRALEQRPNKRPVNSDLRESGAIEQDADVIMFIYRDEVYNPDSADKG 305
Query: 505 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
++ + K RN +GT AF GEY
Sbjct: 306 VAEIIIGKQRNGPIGTCRLAFF------GEY 330
>gi|389872685|ref|YP_006380104.1| replicative DNA helicase [Advenella kashmirensis WT001]
gi|388537934|gb|AFK63122.1| replicative DNA helicase [Advenella kashmirensis WT001]
Length = 460
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 116/285 (40%), Gaps = 39/285 (13%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 320
D I+ GD GI TG+ L+ L PG+L IV G P GK+ + N
Sbjct: 174 DVLKRIEELGDGNHGDVSGIPTGFVDLDRKTTGLHPGQLIIVAGRPAMGKTSF----SMN 229
Query: 321 INEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
I EH G + SME + + A +++ GS ++ + G+
Sbjct: 230 IAEHVAIDEGLPVAVFSMEMEATQLAARMI--------------GSIGKLDQQRMRTGRL 275
Query: 377 W------LSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQ 425
L++ L++ D P++ ++ ++A L+ G GL++ Y +L
Sbjct: 276 LDEDWPKLTHAMQLLQEAQIYIDESPALSPLVLRSRARRLKRKCGKLGLIVVDYLQLMSG 335
Query: 426 RPVSQTE--TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 482
+S+ + T +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 336 NALSKNDNRTAEISEISRSLKTLAKEMECPVIALSQLNRGLEQRTNKRPIMSDLRESGAI 395
Query: 483 INKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ P++ +V + K R +GT+ F
Sbjct: 396 EQDADLILFIYRDEVYHPDSQDKGSAEVIIGKQRAGPIGTVRLTF 440
>gi|108756869|ref|YP_633238.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
gi|108460749|gb|ABF85934.1| replicative DNA helicase [Myxococcus xanthus DK 1622]
Length = 456
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 35/310 (11%)
Query: 242 LKEVVENAELYPIMGLFNFR-DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGEL 299
L E +L P+ L D D++ A +G +STG+ L N+L + GEL
Sbjct: 153 LAEKKREGDLRPVSELMEHTLDLLDKMKAAATGITG----LSTGYIDLDNQLTGLHAGEL 208
Query: 300 TIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKVREHARKLLEKHIKKPFF 355
I+ P GK+ + NI HA K + S+E + +LL +
Sbjct: 209 IILAARPGIGKTSFA----MNIAVHAALKENKAVGIFSLEMPADQLLMRLLASTARVDMK 264
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDL---AKAAVLRHGVR 412
+ GG E+F++ L N I P DL A+ R
Sbjct: 265 KLR-GGRLTPHDEEKFQEMAGALYNAPIYIDDSGGLSP-----FDLRAKARRVKQRDPRL 318
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
L++ Y +L HQ+ ++ V+++ +K+ A+ + ++ R++ + P
Sbjct: 319 SLIVIDYLQLMHQKGKVESRQLEVAEISRALKQLAKELEVPIIALSQLSRKVEDRKDGKP 378
Query: 472 NLYDISGSAHFINKCDNGIVIHRNRDPEAGP----------IDRVQVCVRKVRNKVVGTI 521
L D+ S D + IHR EAGP + V++ + K RN +G+I
Sbjct: 379 LLSDLRESGSIEQDADVVMFIHRETSDEAGPDGQPAQQSNTVIPVELIIAKQRNGPIGSI 438
Query: 522 GEAFLS-YNR 530
FL+ Y R
Sbjct: 439 DLVFLAEYTR 448
>gi|54293721|ref|YP_126136.1| replicative DNA helicase [Legionella pneumophila str. Lens]
gi|53753553|emb|CAH15008.1| Replicative DNA helicase [Legionella pneumophila str. Lens]
Length = 460
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 180 EKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNMA 233
Query: 323 EHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFE 372
EHA K ++ SME A +++ + G + R+T V
Sbjct: 234 EHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHMLS 293
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQ 430
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 294 EAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNAD 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 344 NRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADLI 403
Query: 490 IVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 404 CFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|52840975|ref|YP_094774.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|54296764|ref|YP_123133.1| replicative DNA helicase [Legionella pneumophila str. Paris]
gi|148360609|ref|YP_001251816.1| replicative DNA helicase [Legionella pneumophila str. Corby]
gi|296106325|ref|YP_003618025.1| replicative DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|378776680|ref|YP_005185117.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|397663305|ref|YP_006504843.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|52628086|gb|AAU26827.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|53750549|emb|CAH11951.1| Replicative DNA helicase [Legionella pneumophila str. Paris]
gi|148282382|gb|ABQ56470.1| replicative DNA helicase [Legionella pneumophila str. Corby]
gi|295648226|gb|ADG24073.1| replicative DNA helicase [Legionella pneumophila 2300/99 Alcoy]
gi|307609534|emb|CBW99032.1| replicative DNA helicase [Legionella pneumophila 130b]
gi|364507494|gb|AEW51018.1| replicative DNA helicase [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|395126716|emb|CCD04899.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 460
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 180 EKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNMA 233
Query: 323 EHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFE 372
EHA K ++ SME A +++ + G + R+T V
Sbjct: 234 EHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHMLS 293
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQ 430
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 294 EAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNAD 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 344 NRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADLI 403
Query: 490 IVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 404 CFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|145597061|ref|YP_001161358.1| replicative DNA helicase [Salinispora tropica CNB-440]
gi|145306398|gb|ABP56980.1| primary replicative DNA helicase [Salinispora tropica CNB-440]
Length = 468
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 71/276 (25%), Positives = 106/276 (38%), Gaps = 37/276 (13%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEI+A + +G G+ TG+ L+ L N L G+L IV G P GKS N
Sbjct: 195 LDEIEAVGAQ-NGMMTGVPTGFTDLDRLLNGLHAGQLIIVAGRPGLGKSTASMDFARNAA 253
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
A + S+E E +LL + P G+ +
Sbjct: 254 IRANQASAIFSLEMSKVEIVMRLLSAEARVPL--------------HVLRSGQLSDDDWT 299
Query: 383 SLIRCEN---------DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQT 431
L RC D PS+ + AKA L RH ++ +V+D Y +L +++
Sbjct: 300 KLARCMGEISEAPLFVDDTPSMNLMEIRAKARRLKQRHDLKLIVVD-YLQLMTSPKRTES 358
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ V+ + +K A+ C V V+ R + P L D+ S D I
Sbjct: 359 RQQEVADLSRGLKLLAKEVECPVIAVSQLNRGPEQRTDKRPQLSDLRESGSIEQDADVVI 418
Query: 491 VIHRN-----RDPEAGPIDRVQVCVRKVRNKVVGTI 521
++HR+ P AG D V V K RN T+
Sbjct: 419 LLHRDDYYDKESPRAGEADFV---VAKHRNGPTDTV 451
>gi|88810603|ref|ZP_01125860.1| DnaB helicase [Nitrococcus mobilis Nb-231]
gi|88792233|gb|EAR23343.1| DnaB helicase [Nitrococcus mobilis Nb-231]
Length = 461
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 122/286 (42%), Gaps = 40/286 (13%)
Query: 265 DEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINE 323
+ ID Y + GD G++TG+ + + L G+L IV G P+ GK+ + N+ E
Sbjct: 181 ERIDTLYLQ-EGDVTGLATGFTDFDRMTAGLQVGDLVIVAGRPSMGKTTF----AMNLAE 235
Query: 324 HAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA--- 376
A + L SME A ++L S R+ ++ G+
Sbjct: 236 VAAMRGDQPVALFSMEMPGEALAMRMLS--------------SLGRVELQRIRTGRLEDS 281
Query: 377 -W--LSNTFSLI---RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPV 428
W L++T +L+ R D P++ + A+A L+ HG+ GL++ Y +L H
Sbjct: 282 DWPRLTSTMNLLSQARLFIDDTPALTPMEMRARARRLKREHGL-GLIVVDYLQLMHLPGH 340
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
+ ++++ +K A+ V ++ R L + P + D+ S D
Sbjct: 341 KENRATQIAEISRALKAMAKELGVPVVALSQLNRSLEQRPNKRPAMSDLRESGAIEQDAD 400
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
+ I+R+ +P++ ++ + K RN +GT+ FL Y R
Sbjct: 401 VIVFIYRDEVYNPDSPDKGVAEIIIGKQRNGPIGTVRLTFLGRYTR 446
>gi|422348580|ref|ZP_16429473.1| replicative DNA helicase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404659168|gb|EKB32024.1| replicative DNA helicase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 465
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 27/277 (9%)
Query: 267 IDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA 325
ID Y ++ + G+ TG+ L+ EL + G+L I+ G P+ GK+ + + N+
Sbjct: 185 IDLYQNQQGSEVTGVPTGYPNLDRELAGLQRGDLIIIAGRPSMGKTSFAINIAENVGVRQ 244
Query: 326 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLI 385
+ S+E + A++L+ AN R E E+ W + + ++
Sbjct: 245 ELPVAVFSLEMGGDQLAQRLISSV-------ANIDAQKLRKAQLEDEE---WNAFSKAVH 294
Query: 386 RCEN-----DSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
R EN D P+ I + A+ V + G GL++ Y +L R + +S+
Sbjct: 295 RLENKPIYIDDTPALMISELSSRARRLVNQTGPLGLIVVDYIQLMTGRAGVDNRSTELSE 354
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 494
+ +K A+ C V ++ R L + P + D+ S D + I+R
Sbjct: 355 ISRGLKALAKELHCPVIVLSQLNRSLEQRADKRPIMSDLRESGAIEQDADVIMFIYREVV 414
Query: 495 -NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529
N+D P+ + ++ + K RN +GT+ F N
Sbjct: 415 YNKDTPDK---NLAEIIIAKQRNGPIGTLRMVFRGGN 448
>gi|207743340|ref|YP_002259732.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
gi|300704314|ref|YP_003745917.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
gi|206594737|emb|CAQ61664.1| replicative dna helicase protein [Ralstonia solanacearum IPO1609]
gi|299071978|emb|CBJ43308.1| replicative DNA helicase [Ralstonia solanacearum CFBP2957]
Length = 473
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 426
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|397666418|ref|YP_006507955.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395129829|emb|CCD08062.1| replicative DNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 460
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 122/287 (42%), Gaps = 40/287 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 180 EKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNMA 233
Query: 323 EHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFE 372
EHA K ++ SME A +++ + G + R+T V
Sbjct: 234 EHAAIKAGKPVLVFSMEMPADSLAMRMMSSLGRIDQHRIRTGKLDDNDWPRVTSAVHMLS 293
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQ 430
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 294 EAPLFIDDTPALSPGEMRA---------RARRLAKEHGSLGLIVVDYLQL-MKVPGFNAD 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 344 NRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADLI 403
Query: 490 IVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
I+R N D P+ G ++ V K RN +G + AFL Y R
Sbjct: 404 CFIYRDEVYNEDSPDKG---TAEIIVAKQRNGPIGKVRVAFLGKYTR 447
>gi|259418596|ref|ZP_05742513.1| replicative DNA helicase [Silicibacter sp. TrichCH4B]
gi|259344818|gb|EEW56672.1| replicative DNA helicase [Silicibacter sp. TrichCH4B]
Length = 473
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 116/289 (40%), Gaps = 39/289 (13%)
Query: 245 VVENAELYPIMGLFNF-RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVT 303
++E AEL +F + + I+ + GD+ G+ TG R L+++ ++ P T++
Sbjct: 146 MMERAELSAEPRTMSFMKAQMNAIETMHQIKKGDQIGVPTGLRTLDDMVSLAPKRYTLLG 205
Query: 304 GVPNSGKSEWIDALICNINEHA-----GWKFVLCSM-----ENKVREHARKLLEKHIKKP 353
G + GKS AL +I A G FV M N++ L +P
Sbjct: 206 GSTSMGKS----ALALHIAHSAAREGFGVGFVTLEMPEEDLANRINSTESGLAYNTYDRP 261
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFS-LIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
+ ++ R +E E+ + FS +R L K + + G +
Sbjct: 262 MSDQSF-----RQVIEAAERLQGLPIEIFSERVRDVPAILSEGKKIARKMQPNGKFKGFK 316
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL------HN 465
LVID Y +L R + E+ +SQ+ +K+ A+ HV +A RQL
Sbjct: 317 LLVID-YIQLVRGRGSNSFES--LSQVANDLKQVAKQLDVHVLALAQVDRQLGKLDKWDQ 373
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNR--------DPEAGPIDRV 506
W P+L + GS N DN + + R + P + P DR
Sbjct: 374 WPQARPSLAHLRGSGDLENAPDNVMFVFRPQYFLTPPRCTPPSDPSDRA 422
>gi|319651066|ref|ZP_08005200.1| replicative DNA helicase [Bacillus sp. 2_A_57_CT2]
gi|317397236|gb|EFV77940.1| replicative DNA helicase [Bacillus sp. 2_A_57_CT2]
Length = 454
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 143/353 (40%), Gaps = 24/353 (6%)
Query: 193 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
G P A E A+ V + R +R D + +EV + LG A K ++E A+
Sbjct: 94 GSVPTAANIEYYAKIVEEKSLLRRLIRTATGIAQDGYTREDEVEVLLGE-AEKNIMEVAQ 152
Query: 251 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 305
N +D +D I+ ++R GD GI+TG+ L+ + +L IV
Sbjct: 153 RKNAGAFHNIKDVLVRTYDNIEEMHNR-KGDITGIATGFTELDRMTAGFQRNDLIIVGAR 211
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA 363
P+ GK+ + + N+ G + S+E + ++L E +I GS
Sbjct: 212 PSVGKTAFALNIAQNVATKTGENVAIFSLEMGAEQLVMRILCAEGNIDAQRLRT---GSL 268
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNE 421
+ LSN I D P ++ +K L+ HG+ ++ID
Sbjct: 269 TDEDWGKLTMAMGSLSNAGIFI----DDTPGVRITDIRSKCRRLKQEHGLGMILIDYLQL 324
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 480
+ + + VS++ +K+ A+ V ++ R + + P + DI S
Sbjct: 325 ILGSGRSGENRQQEVSEISRSLKQLARELQVPVIALSQLSRGVEQRQDKRPMMSDIRESG 384
Query: 481 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
D ++R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 385 SIEQDADIVAFLYRDDYYDKESEDKNIIEIIIAKQRNGPVGTVQLAFVKEYNK 437
>gi|421897257|ref|ZP_16327625.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
gi|206588463|emb|CAQ35426.1| replicative dna helicase protein [Ralstonia solanacearum MolK2]
Length = 473
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 426
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 SGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|188997594|ref|YP_001931845.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932661|gb|ACD67291.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1]
Length = 470
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 134/325 (41%), Gaps = 41/325 (12%)
Query: 220 KKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279
K++D++ + E +++ +V EN E ++ ++ + E + S E
Sbjct: 132 KESDINSLLEEAESIIF-------QVTENKE---VVNYYSLGEVLKETLKIINELSKKET 181
Query: 280 ---GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 182 VVTGIPTGFYDLDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSVVDEVPSAFFSLE 241
Query: 336 NKVREHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKAWL--SNTFSLIRCEN 389
++ A +LL + K P + G E++T + A L +T SL
Sbjct: 242 MSRQQIAMRLLGEESKIPLKKIRSGFLNESEIEKLTEVALKMINAPLHIDDTASL----- 296
Query: 390 DSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+LDL AKA L+ ++ +VID L R V + E V+++ +K
Sbjct: 297 -------SILDLKAKARRLKKEKDIKIIVIDYLQLLRSHRRVENRQQE-VAEISRGLKAL 348
Query: 447 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAG 501
A+ V +A RQ + P L D+ S D + IHR ++P
Sbjct: 349 AKELGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQ 408
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAFL 526
++ + K RN GT+ AF+
Sbjct: 409 EEGLAEIIIAKQRNGPTGTVHLAFI 433
>gi|387928265|ref|ZP_10130943.1| replicative DNA helicase [Bacillus methanolicus PB1]
gi|387587851|gb|EIJ80173.1| replicative DNA helicase [Bacillus methanolicus PB1]
Length = 454
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 145/357 (40%), Gaps = 32/357 (8%)
Query: 193 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
G P A E AR V + R +R D + +EV L A K ++E A
Sbjct: 94 GSVPTAANIEYYARIVEEKSLLRRLIRTATAIAQDGYTREDEVDTVLEE-AEKSILEVAH 152
Query: 251 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 305
N +D +D+I+ ++R G+ G+ TG+R L+++ +L IV
Sbjct: 153 RKNAGTFHNIKDILVRTYDKIEMLHNR-KGEITGLETGFRELDKMTAGFQRNDLIIVAAR 211
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
P+ GK+ + + N+ G + S+E + ++L E N R
Sbjct: 212 PSVGKTAFALNIAQNVATKTGENIAIFSLEMGAEQLVMRML-------CAEGNINSQRLR 264
Query: 366 M-TVEEFEQGK-----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVID 417
T+ + + GK LSNT I D P I+ +K L+ HG+ +VID
Sbjct: 265 TGTLTDEDWGKLTMAMGSLSNTGIFI----DDTPGIRISEIRSKCRRLKQDHGLGMVVID 320
Query: 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDI 476
+ S+ + VS++ +K A+ V ++ R + + P + DI
Sbjct: 321 YLQLIQGSGRPSENRQQEVSEISRSLKGLARELEVPVIALSQLSRGVEQRQDKRPMMSDI 380
Query: 477 SGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
S D ++R+ + E D +++ + K RN VGT+ AF+ YN+
Sbjct: 381 RESGSIEQDADIVAFLYRDDYYNKETENKDIIEIIIAKQRNGPVGTVELAFVKEYNK 437
>gi|451823083|ref|YP_007459357.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
gi|451775883|gb|AGF46924.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
desouzaii TCC079E]
Length = 456
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 120/296 (40%), Gaps = 44/296 (14%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTS-GDEFGISTGWRALNELYNVL-PGELTIVTGVPN 307
E+ P++ + ID Y R S D G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLA-----QVVERIDELYSRDSDSDVTGVPTGFIDLDKMTSGLQPGDLIVVAGRPS 222
Query: 308 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
GK+ A NI E G + SME + A ++L GS
Sbjct: 223 MGKT----AFSMNIGEFVSIEHGLPVAIFSMEMSATQLAMRML--------------GSI 264
Query: 364 ERMTVEEFEQGKA----W--LSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVR 412
+ GK W ++N +++ D P++ + AK L G
Sbjct: 265 GIIDQHRIRTGKLTEEDWPKITNAIQVMQDAQLYIDETPALNVMEVRAKTRRLSRQCGQL 324
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
GLVI Y +L TE +S++ +K A+ C + ++ R L + P
Sbjct: 325 GLVIIDYMQLMSGSGEENRATE-ISEISRSLKSLAKELNCPLIALSQLNRSLEQRQNKRP 383
Query: 472 NLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ D+ S D + I+R+ +P++ ++ + K RN +GTI F
Sbjct: 384 VMSDLRESGAIEQDADLILFIYRDEIYNPDSQDKGIAEIIIGKQRNGPIGTIRLTF 439
>gi|406036911|ref|ZP_11044275.1| replicative DNA helicase [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 481
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 111/265 (41%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNSNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|325271870|ref|ZP_08138328.1| DnaB domain-containing protein [Pseudomonas sp. TJI-51]
gi|324102989|gb|EGC00378.1| DnaB domain-containing protein [Pseudomonas sp. TJI-51]
Length = 460
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 35/256 (13%)
Query: 282 STGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
STG L+EL L P ++T++ G+P SGK+ L I +H N V+E
Sbjct: 182 STGLEKLDELVQGLRPKKVTVIAGLPGSGKT----TLALQIAQH-----------NAVKE 226
Query: 341 HARKLLEKHIKKPFFE------ANYGGSA-------ERMTVEEFEQ--GKAWLSNTFSLI 385
+ L I+ P E A+ GG A +M +++ + G L+ L
Sbjct: 227 R-KPWLVFSIEMPGEELGLRAIASLGGVALHKLDNPAQMREDDWARMSGAVGLALEAPLF 285
Query: 386 RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 445
C +D + + + A+ HG+ G+V+D Y L ++ TE V ++ + +
Sbjct: 286 VC-DDPVQTPSTIRATARQCQREHGLAGIVVD-YLTLVRSERGGRSRTEEVGKISKALLQ 343
Query: 446 FAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
A+ A V +A R G+ P D+ S +++HR+ D E G
Sbjct: 344 LAKEMAIPVIELAQLNRDSTKRPGKKPQSSDLRDSGEIEADASCILMVHRDMDTEEGQNG 403
Query: 505 RVQVCVRKVRNKVVGT 520
++ + K R+ VG+
Sbjct: 404 LTEILMTKCRHARVGS 419
>gi|386333710|ref|YP_006029880.1| replicative DNA helicase [Ralstonia solanacearum Po82]
gi|421888424|ref|ZP_16319519.1| replicative DNA helicase [Ralstonia solanacearum K60-1]
gi|334196159|gb|AEG69344.1| replicative DNA helicase [Ralstonia solanacearum Po82]
gi|378966234|emb|CCF96267.1| replicative DNA helicase [Ralstonia solanacearum K60-1]
Length = 473
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 120/292 (41%), Gaps = 45/292 (15%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR S ++ G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDSQNDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 426
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|115378658|ref|ZP_01465808.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|310823081|ref|YP_003955439.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|115364324|gb|EAU63409.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
gi|309396153|gb|ADO73612.1| Replicative DNA helicase [Stigmatella aurantiaca DW4/3-1]
Length = 459
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 159/401 (39%), Gaps = 42/401 (10%)
Query: 151 DGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRII-LATDGDPPGQALAEELARR-- 207
DG+ SV + E + YL +++ LA++ + ++++ RR
Sbjct: 62 DGSQRSVDHLTLSEELKVLGQLAAVGGPAYLMTLDQVVPLASNAVQYAKIVSDQAIRRRL 121
Query: 208 --VGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFD 265
VGRE + + DV+ D M+L L E +L P+ L +
Sbjct: 122 AVVGRE-ILEMASQETGDVEVVVDEAARKMFL----LAEKRREGDLLPVSDLME--QTLN 174
Query: 266 EIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+D +SG G+STG+ L+ +L + GEL I+ P GK+ +L NI H
Sbjct: 175 LLDKMKASSSG-VTGLSTGYVDLDMQLTGLHAGELIILAARPGIGKT----SLAMNIAMH 229
Query: 325 AGWK-----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 379
A + + S+E + +LL + + GG + E+F++ L
Sbjct: 230 AALEEEPKAVAIFSLEMPADQLLMRLLASSARVDMKKLR-GGRLTQHDEEKFQEMAGKLY 288
Query: 380 NTFSLIRCENDSLPSIKWVLDL-AKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYV 436
N I P DL AKA L+ L++ Y +L HQ+ ++ V
Sbjct: 289 NAPIYIDDSGGLSP-----FDLRAKARRLKQKDSRLSLIVIDYLQLMHQKGKVESRQLEV 343
Query: 437 SQMLTMVKRFAQHHACHVWFVAHP-RQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
S++ +K+ A+ + ++ R++ G P L D+ S D + IHR
Sbjct: 344 SEISRGLKQLAKELEVPIIALSQLNRKVEERKGGKPMLSDLRESGSIEQDADVVMFIHRE 403
Query: 496 R---------DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
+ + V++ + K RN VG+I FLS
Sbjct: 404 EQEEGGDGGGGGRSSTVIPVELIIAKQRNGPVGSIDLVFLS 444
>gi|427401338|ref|ZP_18892410.1| replicative DNA helicase [Massilia timonae CCUG 45783]
gi|425719761|gb|EKU82691.1| replicative DNA helicase [Massilia timonae CCUG 45783]
Length = 465
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 30/273 (10%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID Y R G+ G+ TG+ L+ + + L PG+L IV G P+ GK+ + + N+
Sbjct: 183 ERIDELYSRENQGEITGVPTGFIDLDRMTSGLQPGDLVIVAGRPSMGKTAFSVNIGENVA 242
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WL 378
AG + SME + A ++L GS ++ G+ W
Sbjct: 243 IEAGLPVAVFSMEMGGAQLAMRML--------------GSVGQLDQHRLRTGRLHDEDWP 288
Query: 379 SNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
T ++ + + D P++ + A+ + G GL+I Y +L
Sbjct: 289 RLTHAIQKMNDAQLYIDETPALNPIEMRARARRLARQCGKLGLIIVDYLQLMQGSKPGDN 348
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+S++ +K A+ C V ++ R L + P + D+ S D I
Sbjct: 349 RASEISEISRSLKGLAKELQCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVII 408
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 521
++R+ +P++ ++ + K RN +G I
Sbjct: 409 FLYRDEVYNPDSPDKGTAEIIIGKQRNGPIGAI 441
>gi|334563252|ref|ZP_08516243.1| replicative DNA helicase [Corynebacterium bovis DSM 20582]
Length = 444
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 126/305 (41%), Gaps = 39/305 (12%)
Query: 242 LKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
L+ VV+ A E++ + + +DY DE+D + + GI TG+ L+
Sbjct: 129 LESVVDRAQQEMFAVTNEASTQDYESLHDLLESTMDELDMLHEGSVAQ--GIKTGFHELD 186
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
++ N L G++ IV P GKS + + + H G L S+E E ++
Sbjct: 187 DITNGLRGGQMIIVAARPGVGKSTLALDFMRSCSIHQGKTSALFSLEMSKSEVMMRIFSA 246
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
+ P A GG + E+ + + I D P++ + AKA L+
Sbjct: 247 EAEVP-LSAMRGGRMDDAQWEKLTRRIGEIDEAPIFI----DDSPNLTMMEIRAKARRLK 301
Query: 409 --HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
H + +V+D + R V + E VS+ +K A+ C V VA QL+
Sbjct: 302 QQHDLSLIVVDYLQLMSSGRKVESRQQE-VSEFSRQLKLLAKE--CDVPLVA-ISQLNRG 357
Query: 467 V---GE--PPNLYDISGSAHFINKCDNGIVIHR----NRDPE-AGPIDRVQVCVRKVRNK 516
V GE P + D+ S D ++I R NRD E AG D + + K R
Sbjct: 358 VESRGEDAQPRVSDLRESGSLEQDADMVMLISRPDAQNRDHERAGEAD---IILAKHRGG 414
Query: 517 VVGTI 521
+GTI
Sbjct: 415 PIGTI 419
>gi|385680178|ref|ZP_10054106.1| replicative DNA helicase [Amycolatopsis sp. ATCC 39116]
Length = 467
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 240 GALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRA 287
G + EVV+ A+ +Y + DY DEIDA R G G+ TG+
Sbjct: 158 GDIDEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGVSQGVPTGFAD 216
Query: 288 LNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVREHARK 344
L+E+ N L PG++ IV P GKS +D A C+I G V+ S+E E +
Sbjct: 217 LDEVTNGLHPGQMVIVAARPGVGKSTLGLDFARSCSIKH--GMTSVIFSLEMSRIEIVMR 274
Query: 345 LLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
+L + + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 275 MLSAEARIRLADMRSG----RMSDDDWTRLARRMSEISEAPLFIDDS-PNMTMMEIRAKA 329
Query: 405 AVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461
L R+ ++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 330 RRLKQRNDLKLVVLD-YMQLMTSGKRVESRQQEVSEFSRQLKLLAKELEVPVIAISQLNR 388
Query: 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 506
+ P L D+ S D I+I+R DP AG D +
Sbjct: 389 GPEQRTDKRPMLSDLRESGSLEQDADMVILINRPDAWERDDPRAGEADLI 438
>gi|242002238|ref|XP_002435762.1| twinkle protein, putative [Ixodes scapularis]
gi|215499098|gb|EEC08592.1| twinkle protein, putative [Ixodes scapularis]
Length = 557
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 130/340 (38%), Gaps = 49/340 (14%)
Query: 204 LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY 263
+R++G +RC +R PK D + A + +L +V A+ + F
Sbjct: 220 FSRKLGEKRCHYIR-PK----DGYPLAT---LQTSKTSLLSIVRAAQPVSHKAITTFHSL 271
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEW-----I 314
+ H E W L +L G ELT+ TG SGK+ + +
Sbjct: 272 RAGVADMLHNV---EASAGVRWTRFPSLGRLLKGFRRGELTVFTGPTGSGKTTFMCEYSL 328
Query: 315 DALICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFFEANYGGSAERMTVEEFE 372
D + +N G + K+ L LEKH+ + F A+ +FE
Sbjct: 329 DLCVQGVNTLWGSFEIQNERLAKIMLTQFSLISLEKHLDEFDFWAD-----------KFE 377
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432
L F E SI+ VLD AV H ++ +V+D + S
Sbjct: 378 ----LLPLYFMTFHGEQ----SIRNVLDAMSHAVYVHDIQHVVVDNVQFMMGVGEDSSRV 429
Query: 433 TEYVSQ--MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ Q ++ +RFA H CHV V HPR+ + E + + I G A + DN +
Sbjct: 430 DRFWKQDLLVGAFRRFATQHNCHVTLVMHPRKERD--SEELSNHSIFGGAKASQEADNVL 487
Query: 491 VIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530
++ R + +QV +N+ G IG L +N+
Sbjct: 488 ILQDGRLSSSRGRKHLQVT----KNRFDGDIGVVPLEFNK 523
>gi|255324075|ref|ZP_05365200.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
gi|311740297|ref|ZP_07714128.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
ATCC 33035]
gi|255298932|gb|EET78224.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141]
gi|311304680|gb|EFQ80752.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 476
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 117/289 (40%), Gaps = 39/289 (13%)
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGV 305
+ AE Y ++G DE+ A + G E G+ TG+ L++L N L G++ IV
Sbjct: 187 KTAEDYRVLGDL-IDPTIDEL-AALQQAGGVELGVPTGFIDLDKLTNGLHAGQMVIVAAR 244
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
P GKS + + + G V+ S+E E +LL + + G R
Sbjct: 245 PGVGKSTLAMDFMRSCSLQHGKSSVIFSLEMSASEIVMRLLSAESEVKLADMRGG----R 300
Query: 366 MTVEEFEQGKAWLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDP 418
++ E+ W +L R ++ D P++ + +KA L+ HG+ +V+D
Sbjct: 301 VSTED------WAKIDETLNRVQDAPLFIDDSPNLTMMEIRSKARRLKQQHGLDLIVLDY 354
Query: 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDIS 477
+ + V + E VS+ +K A+ + ++ R + P L D+
Sbjct: 355 LQLMSSGKKVESRQQE-VSEFSRQLKLLAKELEVPLIAISQLNRGPEARTDKKPQLADLR 413
Query: 478 GSAHFINKCDNGIVIHR----NRDPE-------------AGPIDRVQVC 509
S D ++++R +RD E GPID VQV
Sbjct: 414 ESGSLEQDADMVMLLYRPDSQDRDNERAGEADIILAKHRGGPIDTVQVA 462
>gi|384136970|ref|YP_005519684.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339291055|gb|AEJ45165.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 463
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 118/271 (43%), Gaps = 16/271 (5%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 185 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 243
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 380
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 244 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 300
Query: 381 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS-QTETEYVSQ 438
+ I ++P ++ L K L HG+ +VID Y +L H R V+ + + +S
Sbjct: 301 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVID-YLQLIHGRRVAGENRQQEISD 356
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR- 496
+ +K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 357 ISRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDY 416
Query: 497 -DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+P+ + V+V + K RN G I FL
Sbjct: 417 YNPDTENPNVVEVIIAKQRNGPTGKIELVFL 447
>gi|345020639|ref|ZP_08784252.1| replicative DNA helicase [Ornithinibacillus scapharcae TW25]
Length = 456
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 124/280 (44%), Gaps = 21/280 (7%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 320
D +D+I+ HR++ D GI TG+R L+++ + +L I+ P+ GK+ + + N
Sbjct: 167 DVYDKIE-MLHRSNADVTGIPTGYRDLDKMTSGFQRNDLIIIAARPSVGKTAFALNISQN 225
Query: 321 INEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEAN--YGGSAERMTVEEFEQGKA 376
+ +AG + S+E + +++L E +I +AN G+ E +
Sbjct: 226 VAVNAGENVAIFSLEMGADQLVQRILCAEGNI-----DANRLRNGNLEPEDWTKLTMAMG 280
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETE 434
LSN I D P I+ +K L+ HG+ ++ID + + +
Sbjct: 281 SLSNAGIFI----DDTPGIRVSEIRSKCRRLKQEHGLGMIMIDYLQLIQGSGKPGENRQQ 336
Query: 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493
VS++ +K A+ + ++ R + + P + D+ S D ++
Sbjct: 337 EVSEISRSLKGLARELNVPLIALSQLSRGVEQRQDKRPMMSDLRESGSIEQDADIVGFLY 396
Query: 494 RNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 397 RDDYYDKESEKQNIIEIILAKQRNGPVGTVELAFVKEYNK 436
>gi|386773808|ref|ZP_10096186.1| primary replicative DNA helicase [Brachybacterium paraconglomeratum
LC44]
Length = 458
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 109/277 (39%), Gaps = 31/277 (11%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ I+A +R G G+ TG+ L+EL L G++ I G P GK+ ++ + +
Sbjct: 180 LNAIEATQNR-GGQVTGVPTGFAELDELTQGLHGGQMIIFAGRPAMGKTTLGMDVLRSAS 238
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
H G V+ S+E E +LL + P G +R W S
Sbjct: 239 IHNGQTSVIFSLEMDKTEITMRLLSAESQVPMNRMRDGSMDDR----------DWQSMAR 288
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL-----------RHGVRGLVIDPYNELDHQRPVSQT 431
++ R + L ++ D A +++ +H +R +VID + + V
Sbjct: 289 AMSRIADAPL----FMDDSANMSLMEIRAKCRRLKQKHDLRLVVIDYLQLMSSGKKVESR 344
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ E VS+ +K A+ C V ++ R + P + D+ S D +
Sbjct: 345 QQE-VSEFSRALKLLAKEIDCPVIAISQLNRGSEQRTDKTPMMSDLRESGSIEQDADVIL 403
Query: 491 VIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+IHR + E+ + V K RN TI AF
Sbjct: 404 LIHREDYYEKESARAGEADLIVAKHRNGATKTIPVAF 440
>gi|421165875|ref|ZP_15624164.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
ATCC 700888]
gi|404539626|gb|EKA49075.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
ATCC 700888]
Length = 464
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 27/271 (9%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSE----WIDA 316
+ D ID ++R + G TG +L+ + PG + +V G P SGK+ + +
Sbjct: 166 EAIDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAER 223
Query: 317 LICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+ NE A + + N+V + KHI + A+ S V +
Sbjct: 224 VALACNEPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWSGLTGAVNKL-- 281
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
N LI C++ SL +++ + + + HG+ G+V Y L + +
Sbjct: 282 ------NHAPLILCDDASL-TLRDIRQICRTVKREHGL-GMVAVDYIGLVKGEQRNASRY 333
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
+ V+++ +KR A+ V +A P+ N + P D+ S D
Sbjct: 334 DVVTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEADADVV 390
Query: 490 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
+++HR+++ +AG ++ V K R+ VG
Sbjct: 391 VLVHRDQESDAGKAGITELIVDKNRHGQVGV 421
>gi|270157428|ref|ZP_06186085.1| replicative DNA helicase [Legionella longbeachae D-4968]
gi|289164179|ref|YP_003454317.1| Replicative DNA helicase [Legionella longbeachae NSW150]
gi|269989453|gb|EEZ95707.1| replicative DNA helicase [Legionella longbeachae D-4968]
gi|288857352|emb|CBJ11180.1| Replicative DNA helicase [Legionella longbeachae NSW150]
Length = 460
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 40/287 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 180 EKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLVIVAGRPSMGKT----TLVMNMA 233
Query: 323 EHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFE 372
EHA K ++ SME A +++ + + G + R+T V
Sbjct: 234 EHAAIKSGKPVLVFSMEMPSDSLAMRMMSSLGRIDQHKIRTGKLDDDDWPRVTSAVHMLS 293
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQ 430
+ ++ +T +L E + A+ HG GL++ Y +L + P ++
Sbjct: 294 EAPLFIDDTPALSPGEMRA---------RARRLAKEHGSVGLIVVDYLQL-MKVPGFNAE 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 344 NRTAEISEISRSLKSLAKELQVPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADLI 403
Query: 490 IVIHRNR-----DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
I+R+ P+ G ++ V K RN +G + AF+ Y R
Sbjct: 404 CFIYRDEVYYEDSPDKG---TAEIIVAKQRNGPIGKVRVAFIGKYTR 447
>gi|225848306|ref|YP_002728469.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644399|gb|ACN99449.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1]
Length = 467
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 107/262 (40%), Gaps = 28/262 (10%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
GI TG+ L+ L PG+L I+ P GK+ + +++ +++ S+E
Sbjct: 185 GIPTGFYELDRLTTGFHPGDLVIIAARPGMGKTSFALSILHHLSIVENVPSAFFSLEMSK 244
Query: 339 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 392
+ A +LL + K P + G E +T + K ++ +T SL
Sbjct: 245 EQIAMRLLGEETKIPLKKIRSGFLNDKEIEAITNAALKMMKTPLYIDDTASL-------- 296
Query: 393 PSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+LDL AKA L+ ++ +V+D L R V + E V+++ +K A+
Sbjct: 297 ----SILDLKAKARRLKKEKDIKIIVVDYLQLLRSHRRVENRQQE-VAEISRGLKGLAKE 351
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 352 LGIPVVALAQLSRQAEMRADKRPQLADLRESGSIEQDADLVLFIHRPEYYKKNPSPQEEG 411
Query: 505 RVQVCVRKVRNKVVGTIGEAFL 526
++ + K RN G I AF+
Sbjct: 412 LAEIIIAKQRNGPTGVINLAFI 433
>gi|296392719|ref|YP_003657603.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
gi|296179866|gb|ADG96772.1| replicative DNA helicase [Segniliparus rotundus DSM 44985]
Length = 485
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 19/267 (7%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
DEID+ R G G+ TG+ L+++ N PG++ IV P GKS + + +
Sbjct: 212 MDEIDSIASR-GGISLGVPTGFADLDKVTNGFHPGQMIIVAARPGVGKSTLALDFLRSCS 270
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
G L S+E E KLL + + G RM+ +++ + +S
Sbjct: 271 VQNGLASALFSLEMSKMEIVMKLLSAEARIRLADMRSG----RMSDDDWSRLARRMSQIS 326
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+DS P++ + AKA L RH ++ +V+D + + V + E VS+
Sbjct: 327 EAPLFIDDS-PNLTIMEIRAKARRLKQRHDLKLVVVDYLQLMTSGKKVESRQQE-VSEFS 384
Query: 441 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----- 494
+K A+ V ++ R + P + D+ S D I++HR
Sbjct: 385 RQLKLLAKELEVPVVALSQLNRGPEQRTDKRPMVSDLRESGSLEQDADMVILVHRPDAIE 444
Query: 495 NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN TI
Sbjct: 445 PDDPRGGEAD---LILGKHRNGPTCTI 468
>gi|262155783|ref|ZP_06028906.1| DNA primase/helicase [Vibrio cholerae INDRE 91/1]
gi|379741339|ref|YP_005333308.1| DNA primase/helicase [Vibrio cholerae IEC224]
gi|421332620|ref|ZP_15783098.1| toprim domain protein [Vibrio cholerae CP1046(19)]
gi|424586414|ref|ZP_18025995.1| toprim domain protein [Vibrio cholerae CP1030(3)]
gi|424598981|ref|ZP_18038164.1| toprim domain protein [Vibrio Cholerae CP1044(17)]
gi|424601707|ref|ZP_18040853.1| toprim domain protein [Vibrio cholerae CP1047(20)]
gi|262030374|gb|EEY49015.1| DNA primase/helicase [Vibrio cholerae INDRE 91/1]
gi|378794849|gb|AFC58320.1| DNA primase/helicase [Vibrio cholerae IEC224]
gi|395929227|gb|EJH39977.1| toprim domain protein [Vibrio cholerae CP1046(19)]
gi|395974768|gb|EJH84284.1| toprim domain protein [Vibrio cholerae CP1030(3)]
gi|395976860|gb|EJH86299.1| toprim domain protein [Vibrio cholerae CP1047(20)]
gi|408042978|gb|EKG79006.1| toprim domain protein [Vibrio Cholerae CP1044(17)]
Length = 544
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 110/467 (23%), Positives = 178/467 (38%), Gaps = 58/467 (12%)
Query: 2 CFRAKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLI 61
CF C + DN R ++ K +E T P+ E+RA +R I
Sbjct: 32 CFTNGCDY---FEPATDNQRPPRQKQQAKPKKERKEFT-------PIEGEVRA-LTKRGI 80
Query: 62 SAETLRRN--RVMQKRHG---HEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYG 116
+T ++ +V Q G + + P R +LV K R NK+F + G
Sbjct: 81 REDTCKKYGYKVGQLSGGEWVQYIDVRDPLTR--QLVAQKIRTENKQFLVKGTLTGELIG 138
Query: 117 LDDIEGESDIIIVEGEMDKLSME--EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 174
G +II EGE+D L++ ++ VS+P+G S +KK +
Sbjct: 139 AHLFSGGKKLIITEGEIDMLTVSQVQSNKYPVVSLPNGISS--AKKAI------------ 184
Query: 175 WNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVL 234
N YL IIL D D G+ A E A + + P KD NE+L
Sbjct: 185 MNNLDYLSNFEEIILCFDMDEVGREGAVEAAELLIDHNVKIMSLP-------LKDPNEML 237
Query: 235 MYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNV 294
+ L + NA+ + GL + D + + G+ ++ +N+ N
Sbjct: 238 LAGRTEELINAIWNAQEHRPDGLLSVEDLVEAALKPLPK------GLPWIYQGMNDSSNG 291
Query: 295 LP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353
GE+ + GK++++ A H K L MEN E + L K K+
Sbjct: 292 RHFGEIHTIGAGTGVGKTDFLCAQADFDIRHLHQKVGLFFMENDPTEILQYLGGKADKRL 351
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV-LDLAKAAVLRHGVR 412
++EA G +++ VE Q KA+ T +N L W + L ++ G R
Sbjct: 352 YYEA---GHPDQLDVE--AQRKAYKKYTGRCFIYDNFGL--CDWSKVKLKILYLIGRGYR 404
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
ID L + E + + ++ + FA+ H V+H
Sbjct: 405 IFYIDHLTAL--ATGGDKDEKKELEDIMADIATFAKRHNVLFHLVSH 449
>gi|257783837|ref|YP_003179054.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
gi|257472344|gb|ACV50463.1| replicative DNA helicase [Atopobium parvulum DSM 20469]
Length = 479
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 119/295 (40%), Gaps = 34/295 (11%)
Query: 234 LMYLGPGALKEVVENAELYPIMGLFN-------------FRDYFDEIDAYYHRTSGDEFG 280
L Y P K+VV+ AE I + N + FDE+ + + E G
Sbjct: 139 LAYNAPEDTKQVVDQAEKL-IFDVTNRDVQQSEQNIEDIMTNLFDELQQNAGKDAA-ELG 196
Query: 281 ISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ TG+ L+ L+ L PG++ ++ P GK+ + ++ N +G L S+E
Sbjct: 197 VQTGFATLDNLFQGLRPGQMVVIGARPGVGKTSFALSMAYNA-AVSGATVALFSLEMSKI 255
Query: 340 EHARKLLEKHIK---KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++LL K + +N +E E+ S ++ D P
Sbjct: 256 EIAQRLLASESKVDLQTIRSSNIRNEQWPTLLEAAER--------ISRLKIIVDDTPGTT 307
Query: 397 WVLDLAKA-AVLRHGVRGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
AKA +L +G++I Y +L +R + + VS+M +K A+
Sbjct: 308 VTEIRAKARRMLNKAEKGVIIIDYLQLLSPPAERGRADSRATEVSEMSRGIKIMAKDLKA 367
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN-RDPEAGPIDR 505
V ++ R L N G+ P L D+ S D +++ R+ D EA DR
Sbjct: 368 PVIALSQLNRTLENRNGKRPQLSDLRESGAIEQDADIVLLLDRSLSDEEAARDDR 422
>gi|393778270|ref|ZP_10366549.1| replicative DNA helicase [Ralstonia sp. PBA]
gi|392714736|gb|EIZ02331.1| replicative DNA helicase [Ralstonia sp. PBA]
Length = 464
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 117/283 (41%), Gaps = 39/283 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR + ++ G++TG+ L+ + + + G+L IV G P+ GK+ A NI
Sbjct: 180 ERIDELYHRDNQNDITGVATGFADLDRMTSGMQAGDLIIVAGRPSMGKT----AFSLNIG 235
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 236 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 281
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 426
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 282 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 341
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 342 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 401
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D + I+R+ +P++ ++ + K RN +GT+ FL
Sbjct: 402 ADVILFIYRDEVYNPDSQDKGTAEIIIGKQRNGPIGTVRLTFL 444
>gi|297618194|ref|YP_003703353.1| DnaB domain-containing protein helicase [Syntrophothermus
lipocalidus DSM 12680]
gi|297146031|gb|ADI02788.1| DnaB domain protein helicase domain protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 800
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 43/223 (19%)
Query: 46 EPLGNELRAYFAERLISAETLRRNRV-------------MQKRHGHEVVIAFPY-WRNGK 91
EP G ++ Y R S + ++R V ++ G E + P+ R G+
Sbjct: 132 EPEGADVLDYLRSRGYSDDLIQRMDVGARPVSEAGVPAGLKLPGGPEYRLLVPFRSRGGR 191
Query: 92 LVNCKYRDFN---KKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVS 148
LV R + ++ + G + ++ ++VEG MD + +E AG V+
Sbjct: 192 LVAVAGRRLDGGEPRYMYPPGMGRALLGQHVLRRDAVPVVVEGLMDAIVLEAAGVQGVVA 251
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
+ GA +S + V L+Q R++LA D D G+A E L R +
Sbjct: 252 L-GGAQASGGQIEV------------------LRQYQRVVLALDADDAGRAGTERLVRAL 292
Query: 209 GRE--RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENA 249
R + + W V KD +E+ G ++E +ENA
Sbjct: 293 VRSGVKTYVAEW-----VGGAKDPDELFRTAGASPIREAIENA 330
>gi|406945708|gb|EKD77133.1| hypothetical protein ACD_42C00471G0003 [uncultured bacterium]
Length = 464
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 86/385 (22%), Positives = 146/385 (37%), Gaps = 60/385 (15%)
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANE 232
YL+ A+ +I D L + +A VG + V P D D E
Sbjct: 96 YLYELAQNTPSAANVIAYADIVREHAILRQLIA--VGTDMTNSVFNPDGRDSQALLDHAE 153
Query: 233 VLMY---------LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
L+Y GP ++ ++ A D +D YH T G GI T
Sbjct: 154 QLVYKISEHQQRGAGPVSISSILAKAT--------------DRLDYLYH-TKGALTGIPT 198
Query: 284 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKV 338
G+ + L + L PG++ ++ G P+ GK+ + NI E A K ++ SME
Sbjct: 199 GFSDFDHLTSGLQPGDMIVIAGRPSMGKTSF----AMNIAEFAAIKQEKPVMVFSMEMPA 254
Query: 339 REHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFEQGKAWLSNTFSLIRCENDSL 392
+ A +++ + + G ++ R+T V + K ++ +T +L E
Sbjct: 255 EQLALRMISSLGRIDQHKVRTGQLSDSDWPRVTSAVSVLSESKLYIDDTPALSPLE---- 310
Query: 393 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
+ A+ +HG L++ Y +L + T +S++ +K A+
Sbjct: 311 -----LRARARRVARKHGGLSLLVIDYLQLMTSPASRENRTNEISEISRSLKSIAKEFNV 365
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRD-PEAGPIDRV 506
V ++ R L + P + D+ S D I+R N D P G
Sbjct: 366 PVIALSQLNRGLEQRTDKRPVMSDLRESGAIEQDADVIAFIYRDEVYNEDSPHKG---TA 422
Query: 507 QVCVRKVRNKVVGTIGEAFL-SYNR 530
++ +RK RN +G FL Y R
Sbjct: 423 EIIIRKQRNGPIGDFRLTFLGQYTR 447
>gi|387220087|gb|AFJ69752.1| hypothetical protein NGATSA_3048200, partial [Nannochloropsis
gaditana CCMP526]
Length = 142
Score = 47.4 bits (111), Expect = 0.019, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 18/134 (13%)
Query: 192 DGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251
D D PG AE+ A ++G R + VR D+D KDAN+ L L L+ +++NA+
Sbjct: 2 DNDTPGIEGAEKFANKLGARRTFIVR-ALPEDLDPPKDANDAL--LRNLNLERMIQNAQR 58
Query: 252 YPIMGLFNFRDY----FDEIDAYYHRTSGDEFGIST----GWRALNELYNVLPGELTIVT 303
P + F D FDE+ R G+S G AL L GE+T++T
Sbjct: 59 LPDTRVIRFSDLRPLVFDEL-----RNRDKHEGVSAKSFPGLMAL--LKGFRKGEMTVLT 111
Query: 304 GVPNSGKSEWIDAL 317
G +GK+ ++ L
Sbjct: 112 GPTGAGKTTFLSQL 125
>gi|421857386|ref|ZP_16289723.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|403187162|dbj|GAB75924.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 453
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 19/264 (7%)
Query: 269 AYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW 327
A H E GI TG+ L N+L + G+L I+ P+ GK+ + L ++ +
Sbjct: 172 AALHENRAFEGGIKTGFIELDNKLGEIGKGDLVIIGARPSMGKTTFAQNLAADMMINQSL 231
Query: 328 KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 387
+ S+E ++ A++L+ I + G AE + A L + +
Sbjct: 232 PVLFVSIEMSGKQIAQRLI-SGIGQVELRKVLSGHAEMEDCGKINTAAAILEK--APLEI 288
Query: 388 ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMV 443
++++ + + A+ +++G G + Y + P+++ + + ++ +
Sbjct: 289 DDNARTTTSTIRRSARKMSMKYGKLGAIFVDY--IQKVTPLTKNNFGRSDKDIGEVSADL 346
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP 498
KR A+ C V+ +A R L N + P D+ S D + I+R NRD
Sbjct: 347 KRMARDFDCPVFALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNRDS 406
Query: 499 -EAGPIDRVQVCVRKVRNKVVGTI 521
EAG ++ + K RN GT+
Sbjct: 407 KEAGT---AEIIIGKARNGSTGTV 427
>gi|456387077|gb|EMF52590.1| dnaB protein [Streptomyces bottropensis ATCC 25435]
Length = 486
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 28/325 (8%)
Query: 212 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 166 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 219
Query: 272 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWK 328
R SG+ G+ TG+ L++L N L PG++ I+ P GKS +D A C+I +
Sbjct: 220 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MP 276
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE 388
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 277 SVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYI 332
Query: 389 NDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+DS P++ + AK L R+ ++ ++ID + S++ + VS M +K
Sbjct: 333 DDS-PNLSMMEIRAKCRRLKQRNDLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLL 391
Query: 447 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEA 500
A+ V ++ R + P + D+ S D I++HR P A
Sbjct: 392 AKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRA 451
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
G D + V K RN TI AF
Sbjct: 452 GEAD---IIVGKHRNGPTATITVAF 473
>gi|398814762|ref|ZP_10573440.1| replicative DNA helicase [Brevibacillus sp. BC25]
gi|398035850|gb|EJL29076.1| replicative DNA helicase [Brevibacillus sp. BC25]
Length = 449
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 115/265 (43%), Gaps = 16/265 (6%)
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
+ + GD GISTG+ L+++ L +L I+ P+ GK+ + L N+ AG
Sbjct: 175 FLSQRRGDITGISTGYTDLDKMTAGLQRSDLIILAARPSVGKTAFALNLAQNVAARAGET 234
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERM-TVEEFEQGKAWLS-NTFSLIR 386
+ S+E A +L+++ I E N S R ++EE + K ++ T +
Sbjct: 235 VAIFSLEM----GAPQLVQRMI---CAEGNLDASRMRSGSLEEDDWQKLTMAIGTLAKAP 287
Query: 387 CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
D P + AK L+ G+ GL++ Y +L H R + VS++ +K
Sbjct: 288 IYIDDSPGVTVQDIRAKCRRLQTEKGL-GLILIDYLQLIHGRGKGDNRQQEVSEISRTLK 346
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ V ++ R + + P + DI S D ++R+ D E+
Sbjct: 347 GIARELNVPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESE 406
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAFL 526
+ ++V + K RN GT+ AFL
Sbjct: 407 SKNVIEVIIAKQRNGPTGTVELAFL 431
>gi|319788984|ref|YP_004150617.1| replicative DNA helicase [Thermovibrio ammonificans HB-1]
gi|317113486|gb|ADU95976.1| replicative DNA helicase [Thermovibrio ammonificans HB-1]
Length = 484
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 110/261 (42%), Gaps = 26/261 (9%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G+ +G+ L+++ + P +L I+ P+ GK+ + ++ N+ + G + S+E
Sbjct: 181 GLPSGFVELDKMTSGFQPSDLIILAARPSVGKTAFALSIAYNVAVNEGKSVAIFSLEMSK 240
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERM------TVEEFEQGKAWLSNTFSLIRCENDSL 392
+ +L+ + K + G ER +V E+ ++ +T ++
Sbjct: 241 EQLVARLVAQDAKISLAKIRSGFLNEREMEKIHDSVSRIEEAPIYIDDTSNI-------- 292
Query: 393 PSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET--EYVSQMLTMVKRFAQHH 450
VLDL A +GL + + L R + +TE+ + VS++ +K A+
Sbjct: 293 ----SVLDLRAKAQRLKAEKGLDLIIVDYLQLMRGIRKTESRQQEVSEISRSLKILAKEL 348
Query: 451 ACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDR 505
V ++ RQ+ + + P L D+ S D + IHR + P+
Sbjct: 349 GVPVIALSQLSRQVEHRADKRPQLSDLRESGSIEQDADVVMFIHRPDLVKKKPDPEEEGI 408
Query: 506 VQVCVRKVRNKVVGTIGEAFL 526
++ + K RN GT+ AF+
Sbjct: 409 AEIIIAKQRNGPTGTVRLAFI 429
>gi|422389293|ref|ZP_16469390.1| replicative DNA helicase [Propionibacterium acnes HL103PA1]
gi|422462817|ref|ZP_16539437.1| replicative DNA helicase [Propionibacterium acnes HL060PA1]
gi|422565557|ref|ZP_16641205.1| replicative DNA helicase [Propionibacterium acnes HL082PA2]
gi|314965964|gb|EFT10063.1| replicative DNA helicase [Propionibacterium acnes HL082PA2]
gi|315095192|gb|EFT67168.1| replicative DNA helicase [Propionibacterium acnes HL060PA1]
gi|327328820|gb|EGE70580.1| replicative DNA helicase [Propionibacterium acnes HL103PA1]
Length = 448
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 236 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 280
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 281 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 337
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMVIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 398 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA ++ ++ ++ID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIIIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 456 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 509
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 510 VRKVRNKVVGTIGEAF 525
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|395206012|ref|ZP_10396643.1| replicative DNA helicase [Propionibacterium humerusii P08]
gi|422440911|ref|ZP_16517724.1| replicative DNA helicase [Propionibacterium acnes HL037PA3]
gi|422471972|ref|ZP_16548460.1| replicative DNA helicase [Propionibacterium acnes HL037PA2]
gi|422572735|ref|ZP_16648302.1| replicative DNA helicase [Propionibacterium acnes HL044PA1]
gi|313836451|gb|EFS74165.1| replicative DNA helicase [Propionibacterium acnes HL037PA2]
gi|314929064|gb|EFS92895.1| replicative DNA helicase [Propionibacterium acnes HL044PA1]
gi|314970989|gb|EFT15087.1| replicative DNA helicase [Propionibacterium acnes HL037PA3]
gi|328906648|gb|EGG26423.1| replicative DNA helicase [Propionibacterium humerusii P08]
Length = 448
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 130/319 (40%), Gaps = 47/319 (14%)
Query: 236 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 280
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVSDIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 281 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 337
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 398 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA ++ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKSDLKLVVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 456 FVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRV 506
++ P Q ++ + P + D+ S D I++HR P AG D
Sbjct: 364 ALSQLNRGPEQRND---KKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD-- 418
Query: 507 QVCVRKVRNKVVGTIGEAF 525
+ V K RN T+ F
Sbjct: 419 -IIVAKHRNGPTRTVPVVF 436
>gi|417932180|ref|ZP_12575529.1| replicative DNA helicase [Propionibacterium acnes SK182B-JCVI]
gi|340774790|gb|EGR97265.1| replicative DNA helicase [Propionibacterium acnes SK182B-JCVI]
Length = 448
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 236 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 280
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 281 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 337
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIKNH--LAAAIFSLEMG 249
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 398 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA ++ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 456 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 509
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 510 VRKVRNKVVGTIGEAF 525
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|422577244|ref|ZP_16652780.1| replicative DNA helicase [Propionibacterium acnes HL001PA1]
gi|314922008|gb|EFS85839.1| replicative DNA helicase [Propionibacterium acnes HL001PA1]
Length = 448
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 127/316 (40%), Gaps = 41/316 (12%)
Query: 236 YLGPGALKEVVENA--------------ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-G 280
Y G G + ++V+ A E +P+ LF FDE++A R GD G
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFE--STFDELEAIEAR--GDAMAG 191
Query: 281 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENK 337
I TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 192 IPTGFTDLDELTNGFMPGQMVIVAARPAMGKSTLALDFARAAAIKNHLAA--AIFSLEMG 249
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
E +LL G R++ E++++ + S +DS P++
Sbjct: 250 RNEIVMRLLSAEAGIELSRMRAG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTM 304
Query: 398 VLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ AKA ++ ++ ++ID + + V + E VS+ +K A+ V
Sbjct: 305 MEIRAKARRMKQKFDLKLIIIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVV 363
Query: 456 FVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVC 509
++ R + P + D+ S D I++HR P AG D +
Sbjct: 364 ALSQLNRGPEQRTDKKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---II 420
Query: 510 VRKVRNKVVGTIGEAF 525
V K RN T+ F
Sbjct: 421 VAKHRNGPTRTVPVVF 436
>gi|61806417|ref|YP_214194.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
gi|61374342|gb|AAX44196.1| T7-like primase/helicase [Prochlorococcus phage P-SSP7]
Length = 520
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 109/504 (21%), Positives = 198/504 (39%), Gaps = 87/504 (17%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYWR-NGKLVNCKYRDFNKKFWQEKDTEKVFYG 116
+R IS +T + ++ + E + FPY+ +G L K +D K F E + +G
Sbjct: 64 KRGISEKTCEKYKIYRD----ETHLRFPYFDGSGCLKGFKTKDKLKNFKYEGVSTDTLFG 119
Query: 117 LDDIEGESD-IIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVS--KKNVPSEEQDTKY 171
I+I EGE+D S EA N VS+P GA + +K +P
Sbjct: 120 QHLFPSTGKRIVITEGELDAASCYEA-MENWPMVSLPHGAAGARKDLQKQIP-------- 170
Query: 172 QYLWNCKMYLKQASRIILATDGDPPGQALAEELAR--RVGRERCWRVRWPKKNDVDHFKD 229
L+ I+L D D G+ E+ A +G+ + R ++ +KD
Sbjct: 171 --------LLQGYEEIVLFFDNDDAGRRAVEQAASILPLGKVKIAR--------LEQYKD 214
Query: 230 ANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALN 289
A++ L A++ + +A+ Y G+ + + +++ T S + L
Sbjct: 215 ASDALQANDKDAIRRAIWDAKEYQPDGIVDGKSLLEQV-----TTPSPPCNHSYPFPGLQ 269
Query: 290 EL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ + + GELT +T GKS + L + + G K ++E R A L+
Sbjct: 270 SMTHGIRYGELTTITAGTGQGKSTFCRQLATEL-LNTGTKVGYIALEESNRRTALGLMSV 328
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQG--KAW----------LSNTFSLIRCENDSLPSIK 396
+ K A + G E T+++ +W LS R E +L
Sbjct: 329 AVGK----ALHLGEHEYTTLKDAYDSTISSWDLYLYDHFGSLSADTIYSRIEYMALGLDI 384
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
V+ L ++L G+ G D +R + QT +T ++ + ++
Sbjct: 385 KVIFLDHLSILLSGLDG---------DERRMIDQT--------MTNLRSLVERTGIKLFL 427
Query: 457 VAHPRQLHN----WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512
V+H R+ G+ ++ + GSA D + + R+ + P D +R
Sbjct: 428 VSHLRRAQGDKAIEDGQKVSIGMLRGSASISQLSDTVLALERD---QQNPDD--VSTLRI 482
Query: 513 VRNKVVGTIG-EAFLSYNRVTGEY 535
++N+ G G A L Y++ T ++
Sbjct: 483 LKNRYSGETGVAAQLKYDKTTCKF 506
>gi|51894449|ref|YP_077140.1| replicative DNA helicase [Symbiobacterium thermophilum IAM 14863]
gi|51858138|dbj|BAD42296.1| replicative DNA helicase [Symbiobacterium thermophilum IAM 14863]
Length = 446
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 116/283 (40%), Gaps = 28/283 (9%)
Query: 256 GLFNFRDYFDEIDAYYH-----RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 309
G + RD + AY H T G G+ +G+R L+ + + P +L IV P+ G
Sbjct: 156 GYLHIRDAL--VTAYGHLEHLYSTKGRTTGVPSGYRDLDAMTSGFQPSDLIIVAARPSVG 213
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
K+ + + N A K + S+E + A +LL EA G R T +
Sbjct: 214 KTAFTLNIARNAAVQAKAKVIFFSLEMSAEQLALRLLAS-------EATVDGHKLR-TGQ 265
Query: 370 EFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH 424
+Q L S++ + D P+I AKA L HG+ +++D Y +L
Sbjct: 266 LQDQDWHKLGTALSVLGESDIYIDDTPNIPLQEMRAKARRLAQEHGLDLIIVD-YLQLMS 324
Query: 425 --QRPVSQT-ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 480
QRP Q + +S++ +K A+ + ++ R + + P L D+ S
Sbjct: 325 LPQRPGQQANRQQEISEISRSLKALARELKVPIIALSQLSRSVEQRQDKRPMLSDLRESG 384
Query: 481 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 521
D ++R D D V+V + K RN +GT+
Sbjct: 385 ALEQDADVVAFLYREDYYDQNTDKKDIVEVILAKHRNGPIGTV 427
>gi|290959035|ref|YP_003490217.1| replicative DNA helicase [Streptomyces scabiei 87.22]
gi|260648561|emb|CBG71672.1| putative replicative DNA helicase [Streptomyces scabiei 87.22]
Length = 486
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 28/325 (8%)
Query: 212 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 166 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 219
Query: 272 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWK 328
R SG+ G+ TG+ L++L N L PG++ I+ P GKS +D A C+I +
Sbjct: 220 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKSTLALDFARACSIKHN--MP 276
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE 388
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 277 SVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPLYI 332
Query: 389 NDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+DS P++ + AK L R+ ++ ++ID + S++ + VS M +K
Sbjct: 333 DDS-PNLSMMEIRAKCRRLKQRNDLKLVIIDYLQLMQSGGKRSESRQQEVSDMSRNLKLL 391
Query: 447 AQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEA 500
A+ V ++ R + P + D+ S D I++HR P A
Sbjct: 392 AKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRA 451
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
G D + V K RN TI AF
Sbjct: 452 GEAD---IIVGKHRNGPTATITVAF 473
>gi|306817512|ref|ZP_07451256.1| replicative DNA helicase DnaB [Mobiluncus mulieris ATCC 35239]
gi|307699799|ref|ZP_07636850.1| replicative DNA helicase [Mobiluncus mulieris FB024-16]
gi|304649736|gb|EFM47017.1| replicative DNA helicase DnaB [Mobiluncus mulieris ATCC 35239]
gi|307614837|gb|EFN94055.1| replicative DNA helicase [Mobiluncus mulieris FB024-16]
Length = 458
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEW-IDAL 317
+D ++ T D + TG+R + E+ + PG++ IV P GKS + +D
Sbjct: 164 LKDLIPQVTTEISNTEPDPNMVRTGFRDFDTEIQGLRPGQMIIVAARPGMGKSTFSLD-- 221
Query: 318 ICNINE-HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
IC H + S+E E ++L+ P N G S+ T Q +A
Sbjct: 222 ICRYAAIHENKTAAIFSLEMSYAEIIKRLISAEASVPLSAINAGVSSADGT-----QSQA 276
Query: 377 WLSNTFSLIR-----------CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELD 423
+ +N + N ++P I+ AK L+ H + V+D Y +L
Sbjct: 277 YWTNIANATNRMFEKPLYIDDSVNLTMPEIR-----AKCRRLKYNHDLSIAVVD-YLQLM 330
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 482
R +++ + VS++ +K A+ + VA R + + P + D+ S
Sbjct: 331 KGRGSAESRQQEVSEISRSLKLLAKELEIPIIAVAQLNRGPESRTDKKPMMSDLRESGSL 390
Query: 483 INKCDNGIVIHRNRDPEA-GPIDR---VQVCVRKVRNKVVGTIGEAF 525
D +++HR PEA P DR + V K RN GT+ F
Sbjct: 391 EQDADMVLLLHR---PEAYNPDDRPGEADLYVAKHRNGRTGTVHLTF 434
>gi|347534448|ref|YP_004841118.1| DNA primase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504504|gb|AEN99186.1| DNA primase [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 611
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 116/279 (41%), Gaps = 69/279 (24%)
Query: 36 REITEDSLELEPLG---NE--LRAYFAERLISAETLRRNRV--------MQKRHGHEVVI 82
R+I+++ +E LG NE L+ YF E+ ++ + LR+ + ++ R +++
Sbjct: 146 RKISDEMIETFNLGYAPNERILKKYFEEKKVNYQDLRKTGLFTETNDGSLKDRFAGRLMV 205
Query: 83 AFPYWRN--GKLVNCKYRDFNK-----KFWQEKDTE-----KVFYGLD----DIEGESDI 126
RN GK V R +K K+ +TE K+ Y D +I + D+
Sbjct: 206 PI---RNESGKTVGFSGRLLHKDDDMPKYLNTPETELFNKRKIIYNFDLAKPEIRQKHDV 262
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
I+ EG MD +S +AG N V+ S +EEQ +++ K KQ
Sbjct: 263 ILFEGFMDVISAYQAGVKNGVA---------SMGTSLTEEQ------IYDLKRVTKQ--- 304
Query: 187 IILATDGDPPGQAL---AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243
I + DGD PGQ A +L ++ + ++ P D D ++ N G + +
Sbjct: 305 IYVCYDGDTPGQKATNRAVDLLQKDSNLKIGIIQMPDGIDPDEYRRNN------GETSFQ 358
Query: 244 EVVENAE----------LYPIMGLFNFRDYFDEIDAYYH 272
+VVEN L L N D D ID H
Sbjct: 359 QVVENGRESIVKFKINYLRSQFNLTNEEDKLDYIDKVLH 397
>gi|429462749|ref|YP_007184212.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451811501|ref|YP_007447956.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
gi|429338263|gb|AFZ82686.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii (ex Angomonas deanei ATCC 30255)]
gi|451776659|gb|AGF47658.1| replicative DNA helicase [Candidatus Kinetoplastibacterium
crithidii TCC036E]
Length = 455
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 123/290 (42%), Gaps = 32/290 (11%)
Query: 250 ELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPN 307
E+ P++ + ID Y R S + G+ TG+ L+++ + L PG+L +V G P+
Sbjct: 168 EIQPLLS-----QVVERIDELYSRDSNSDITGVPTGFIDLDKMTSGLQPGDLIVVAGRPS 222
Query: 308 SGKSEWIDALICNINEHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSA 363
GK+ A NI E+ G + SME + A ++L + G
Sbjct: 223 MGKT----AFSMNIGEYVSIEHGLPVAIFSMEMSATQLAMRMLGSIGVIDQHKIRTG--- 275
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPSIKWVLDLAKAAVLRH--GVRGLVIDP 418
R+T E++ + ++N ++ D P++ + AK L G GL+I
Sbjct: 276 -RLTEEDWPK----ITNAIQSMQDAQLYIDESPALNVMEVRAKTRRLSRQCGQLGLIIID 330
Query: 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDIS 477
Y +L TE +S++ +K A+ C + ++ R L + P + D+
Sbjct: 331 YMQLMSGNGEENRATE-ISEISRSLKGLAKELNCPLIALSQLNRSLEQRQNKRPVMSDLR 389
Query: 478 GSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
S D + I+R+ +P++ ++ + K RN +GTI F
Sbjct: 390 ESGAIEQDADLILFIYRDEIYNPDSQEKGIAEIIIGKQRNGPIGTIKLTF 439
>gi|164688035|ref|ZP_02212063.1| hypothetical protein CLOBAR_01680 [Clostridium bartlettii DSM
16795]
gi|164602448|gb|EDQ95913.1| hypothetical protein CLOBAR_01680 [Clostridium bartlettii DSM
16795]
Length = 363
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 99/229 (43%), Gaps = 19/229 (8%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF-- 354
G LT++TG P SGKS ++ ++ N G+ L S E + A K + P
Sbjct: 111 GTLTVLTGSPGSGKSTFLKQILANA-LSLGFNSFLYSGE-LTAQMALDWFYKTVSNPIHL 168
Query: 355 -FEANYGGSAERMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR 412
F N G ++T E Q WL F + +I V++ ++ V+
Sbjct: 169 SFGVNSFGKTIKVTEEGVSQINKWLRGKLFLFSKNAQADETNISTVIEF---LAVKKNVK 225
Query: 413 GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 472
V+D ++ R + E + ++ +K A+++ + VAH + ++ + P+
Sbjct: 226 LFVLDNLMTIEC-RGTDKYEKQI--NVIKSLKNLAKNYNIVIILVAHSNK-NSIMRSEPH 281
Query: 473 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521
++DISG++ N D + R+ D + + + ++N++ G I
Sbjct: 282 VFDISGASEIANLSDYILTATRDNDRDN------ETTILLLKNRITGLI 324
>gi|82703068|ref|YP_412634.1| replicative DNA helicase [Nitrosospira multiformis ATCC 25196]
gi|82411133|gb|ABB75242.1| primary replicative DNA helicase [Nitrosospira multiformis ATCC
25196]
Length = 470
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 119/289 (41%), Gaps = 30/289 (10%)
Query: 260 FRDYFDEIDAYYHR-TSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDAL 317
++ + I+ Y++ D GI+TG+ L+E PG+L IV G P+ GK+ A
Sbjct: 187 LKEVVERIETLYNQDNQSDVTGIATGFHDLDEKTSGFQPGDLVIVAGRPSMGKT----AF 242
Query: 318 ICNINEHAGWKF----VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
NI EH + SME + A ++L K + G R+ E++ +
Sbjct: 243 SLNIAEHVALTLQKPVAVFSMEMGGAQLAMRMLGSVGKLDQHKVRTG----RLLDEDWSR 298
Query: 374 GKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
L N L E+ +L +++ A+ +HG GL++ Y +L +
Sbjct: 299 LTHALGKLNDAPLFIDESAALNALELRA-RARRLHRQHGELGLIVVDYLQLMSAAGQGEN 357
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFINKCDN 488
+S++ +K A+ HV VA R L + P + D+ S D
Sbjct: 358 RATEISEISRSLKALAKE--LHVPVVALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADL 415
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
+ I+R+ +PE ++ + K RN +G + FL GEY
Sbjct: 416 ILFIYRDEVYNPETPDKGIAEIIIGKQRNGPIGKVDLTFL------GEY 458
>gi|227876550|ref|ZP_03994661.1| primary replicative DNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269977752|ref|ZP_06184712.1| replicative DNA helicase [Mobiluncus mulieris 28-1]
gi|227842864|gb|EEJ53062.1| primary replicative DNA helicase [Mobiluncus mulieris ATCC 35243]
gi|269934056|gb|EEZ90630.1| replicative DNA helicase [Mobiluncus mulieris 28-1]
Length = 458
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 116/287 (40%), Gaps = 37/287 (12%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEW-IDAL 317
+D ++ T D + TG+R + E+ + PG++ IV P GKS + +D
Sbjct: 164 LKDLIPQVTTEISNTEPDPNMVRTGFRDFDTEIQGLRPGQMIIVAARPGMGKSTFSLD-- 221
Query: 318 ICNINE-HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
IC H + S+E E ++L+ P N G S+ T Q +A
Sbjct: 222 ICRYAAIHENKTAAIFSLEMSYAEIIKRLISAEASVPLSAINAGVSSADGT-----QSQA 276
Query: 377 WLSNTFSLIR-----------CENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELD 423
+ +N + N ++P I+ AK L+ H + V+D Y +L
Sbjct: 277 YWTNIANATNRMFEKPLYIDDSVNLTMPEIR-----AKCRRLKYNHDLSIAVVD-YLQLM 330
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHF 482
R +++ + VS++ +K A+ + VA R + + P + D+ S
Sbjct: 331 KGRGSAESRQQEVSEISRSLKLLAKELEIPIIAVAQLNRGPESRTDKKPMMSDLRESGSL 390
Query: 483 INKCDNGIVIHRNRDPEA-GPIDR---VQVCVRKVRNKVVGTIGEAF 525
D +++HR PEA P DR + V K RN GT+ F
Sbjct: 391 EQDADMVLLLHR---PEAYNPDDRPGEADLYVAKHRNGRTGTVHLTF 434
>gi|262372193|ref|ZP_06065472.1| replicative DNA helicase [Acinetobacter junii SH205]
gi|262312218|gb|EEY93303.1| replicative DNA helicase [Acinetobacter junii SH205]
Length = 481
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|422881109|ref|ZP_16927565.1| DNA replication protein DnaC [Streptococcus sanguinis SK355]
gi|332365066|gb|EGJ42831.1| DNA replication protein DnaC [Streptococcus sanguinis SK355]
Length = 451
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 196 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 254
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDVSETANR 156
Query: 255 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 309
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFSNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 370 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 422
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 481
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 482 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 521
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|225873016|ref|YP_002754475.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
gi|225791594|gb|ACO31684.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196]
Length = 467
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 130/335 (38%), Gaps = 48/335 (14%)
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNF-RDYFDEIDAYYHRTSGDEF-GI 281
D +DA +VL GAL +V E + + RD F ID Y G E G+
Sbjct: 133 ADQSEDALDVL-NAAEGALLQVTERSISQGFASIPEIVRDSFGTIDNLYKE--GREVTGL 189
Query: 282 STGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
+T + +++ + L EL I+ P+ GK+ W + N G + S+E
Sbjct: 190 ATHFEEFDKMTSGLQDSELIIIAARPSMGKTAWAINIAQNAAVKGGKVVAVFSLEMSKES 249
Query: 341 HARKLL-------EKHIKKPFFEANYGGSAERMT--VEEFEQGKAWLSNTFSLIRCENDS 391
R++L + I+K F E++T +E + + ++ +T
Sbjct: 250 LLRRMLASEAMVDSQKIQKGFL---LREDQEKLTMALERLAESRMFIDDT---------- 296
Query: 392 LPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVS-------QTETEYVSQMLTM 442
P I AKA LR G L++ Y +L P + T+ VS +
Sbjct: 297 -PGISLSEMRAKARRLRQQQGTLDLIVIDYLQLMTGTPPGGSGAKRYENRTQEVSAISRG 355
Query: 443 VKRFAQHHACHVWFVAHPRQLHNWVG--EPPNLYDISGSAHFINKCDNGIVIHR----NR 496
+K A+ V ++ + G + P L D+ S D IHR NR
Sbjct: 356 LKALAKELKVPVIALSQLSRASEQRGGDKKPMLSDLRESGSIEQDADVVAFIHREAYYNR 415
Query: 497 D----PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
D P+ + ++ + K RN G++ A+LS
Sbjct: 416 DENGQPDPETEGKAEIIIAKQRNGPTGSVQLAYLS 450
>gi|293609463|ref|ZP_06691765.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375135280|ref|YP_004995930.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter calcoaceticus PHEA-2]
gi|427425375|ref|ZP_18915471.1| replicative DNA helicase [Acinetobacter baumannii WC-136]
gi|292827915|gb|EFF86278.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122725|gb|ADY82248.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter calcoaceticus PHEA-2]
gi|425697866|gb|EKU67526.1| replicative DNA helicase [Acinetobacter baumannii WC-136]
Length = 481
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|258512882|ref|YP_003186316.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479608|gb|ACV59927.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 459
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 16/271 (5%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 181 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 239
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 380
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 240 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 296
Query: 381 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QRPVSQTETEYVSQ 438
+ I ++P ++ L K L HG+ +VID Y +L H +R + + +S
Sbjct: 297 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVID-YLQLIHGRRMAGENRQQEISD 352
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR- 496
+ +K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 353 ISRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDY 412
Query: 497 -DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+P+ + V+V + K RN G I FL
Sbjct: 413 YNPDTENPNVVEVIIAKQRNGPTGKIELVFL 443
>gi|225017890|ref|ZP_03707082.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
DSM 5476]
gi|224949402|gb|EEG30611.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum
DSM 5476]
Length = 635
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 49/305 (16%)
Query: 55 YFAERLISAETLRRNRV-----MQKRHGHEVVIAFPYWRNGKLVNCK----YRDFNKKFW 105
YFA R +SA + R R+ + + G + WR + + R+ + K
Sbjct: 123 YFARRGLSAGIIERFRLGYDPAFRTQEGGSPAV----WRAAIVPTGRGCYLARNLDSKGK 178
Query: 106 QEKDTEK---VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNV 162
++ ++ + + +EGE+ + +VEGE D LS+ EAG A S NV
Sbjct: 179 DDRIRKRGGSPLFAYESLEGETPVFVVEGEFDALSVYEAG--------GEAVGLGSTANV 230
Query: 163 PSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKN 222
P Q + C++ A +IL+ D D G+ A L +G V+ + N
Sbjct: 231 P--------QLVKLCRVS-PPACPLILSLDNDEEGEKAAARLEEELG---ALGVKTVRAN 278
Query: 223 DVDHFKDANEVLMY---LGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYH------- 272
+KDANE L A++ VE AE + R+ + A H
Sbjct: 279 IAGEYKDANEALTAEREAFCAAVRHAVEQAEGLEELERQKEREEYLATSAGSHLQEFLDG 338
Query: 273 -RTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330
S D I TG+ L+E+ + L L + + + GK+ + L + AG V
Sbjct: 339 IAASVDTPCIPTGFPKLDEMLDGGLYEGLYCIGAITSLGKTTFAMQLADQV-ARAGKDVV 397
Query: 331 LCSME 335
+ S+E
Sbjct: 398 IFSLE 402
>gi|169633235|ref|YP_001706971.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii SDF]
gi|169152027|emb|CAP00907.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii]
Length = 481
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|357591157|ref|ZP_09129823.1| replicative DNA helicase [Corynebacterium nuruki S6-4]
Length = 503
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 125/305 (40%), Gaps = 38/305 (12%)
Query: 242 LKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
L+ VV+ A E++ I DY DEID H T G G+ +G+ L+
Sbjct: 194 LESVVDRAQQEMFTITNESASEDYQVLADLLAPTMDEIDDL-HSTGGGVAGVLSGFADLD 252
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
EL N G++ IV P GKS + NI+ G VL S+E E ++
Sbjct: 253 ELTNGFRGGQMIIVAARPGVGKSTLALDFMRNISVKQGKATVLFSLEMSKSEVMMRIFSA 312
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
+ P A GG + E+ + + I D P++ AKA L
Sbjct: 313 EAEVP-LSAMRGGKMDDNQWEKLTRRVGQIEGAPIFI----DDSPNLTMTEIRAKARRLA 367
Query: 408 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
+H + GL++ Y +L ++ + VS+ +K A+ V VA QL+
Sbjct: 368 QKHDL-GLIVVDYLQLMSSGKKVESRQQEVSEFSRQLKLLAKE--VDVPLVAI-SQLNRG 423
Query: 467 V---GEP--PNLYDISGSAHFINKCDNGIVIHR----NRDPE-AGPIDRVQVCVRKVRNK 516
V G+ P + D+ S D I+I+R NRD E AG D + + K R
Sbjct: 424 VEARGDDALPRVSDLRESGSLEQDADIVILINRPDSQNRDHERAGEAD---LILAKHRGG 480
Query: 517 VVGTI 521
+GT+
Sbjct: 481 PIGTV 485
>gi|169795501|ref|YP_001713294.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii AYE]
gi|184158697|ref|YP_001847036.1| replicative DNA helicase [Acinetobacter baumannii ACICU]
gi|213158559|ref|YP_002319857.1| replicative DNA helicase [Acinetobacter baumannii AB0057]
gi|215482988|ref|YP_002325193.1| replicative DNA helicase [Acinetobacter baumannii AB307-0294]
gi|239501435|ref|ZP_04660745.1| replicative DNA helicase [Acinetobacter baumannii AB900]
gi|260554563|ref|ZP_05826784.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|301345095|ref|ZP_07225836.1| replicative DNA helicase [Acinetobacter baumannii AB056]
gi|301510833|ref|ZP_07236070.1| replicative DNA helicase [Acinetobacter baumannii AB058]
gi|301595322|ref|ZP_07240330.1| replicative DNA helicase [Acinetobacter baumannii AB059]
gi|332850736|ref|ZP_08432983.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332866953|ref|ZP_08437279.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|332873689|ref|ZP_08441632.1| replicative DNA helicase [Acinetobacter baumannii 6014059]
gi|384131273|ref|YP_005513885.1| dnaB [Acinetobacter baumannii 1656-2]
gi|384143774|ref|YP_005526484.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii MDR-ZJ06]
gi|385238111|ref|YP_005799450.1| replicative DNA helicase [Acinetobacter baumannii TCDC-AB0715]
gi|387123391|ref|YP_006289273.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|403676329|ref|ZP_10938315.1| replicative DNA helicase [Acinetobacter sp. NCTC 10304]
gi|407933300|ref|YP_006848943.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|416147788|ref|ZP_11602025.1| replicative DNA helicase [Acinetobacter baumannii AB210]
gi|417549065|ref|ZP_12200145.1| replicative DNA helicase [Acinetobacter baumannii Naval-18]
gi|417552427|ref|ZP_12203497.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|417560164|ref|ZP_12211043.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|417566715|ref|ZP_12217587.1| replicative DNA helicase [Acinetobacter baumannii OIFC143]
gi|417569931|ref|ZP_12220789.1| replicative DNA helicase [Acinetobacter baumannii OIFC189]
gi|417574714|ref|ZP_12225568.1| replicative DNA helicase [Acinetobacter baumannii Canada BC-5]
gi|417578347|ref|ZP_12229184.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|417869012|ref|ZP_12514007.1| replicative DNA helicase [Acinetobacter baumannii ABNIH1]
gi|417873970|ref|ZP_12518832.1| replicative DNA helicase [Acinetobacter baumannii ABNIH2]
gi|417879276|ref|ZP_12523851.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|417881334|ref|ZP_12525658.1| replicative DNA helicase [Acinetobacter baumannii ABNIH4]
gi|421198171|ref|ZP_15655338.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|421202657|ref|ZP_15659804.1| replicative DNA helicase [Acinetobacter baumannii AC12]
gi|421457208|ref|ZP_15906545.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|421536100|ref|ZP_15982351.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii AC30]
gi|421622919|ref|ZP_16063811.1| replicative DNA helicase [Acinetobacter baumannii OIFC074]
gi|421626390|ref|ZP_16067219.1| replicative DNA helicase [Acinetobacter baumannii OIFC098]
gi|421629794|ref|ZP_16070509.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|421633783|ref|ZP_16074412.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|421644506|ref|ZP_16084988.1| replicative DNA helicase [Acinetobacter baumannii IS-235]
gi|421648820|ref|ZP_16089219.1| replicative DNA helicase [Acinetobacter baumannii IS-251]
gi|421651789|ref|ZP_16092156.1| replicative DNA helicase [Acinetobacter baumannii OIFC0162]
gi|421653981|ref|ZP_16094312.1| replicative DNA helicase [Acinetobacter baumannii Naval-72]
gi|421660101|ref|ZP_16100309.1| replicative DNA helicase [Acinetobacter baumannii Naval-83]
gi|421664563|ref|ZP_16104703.1| replicative DNA helicase [Acinetobacter baumannii OIFC110]
gi|421676133|ref|ZP_16116045.1| replicative DNA helicase [Acinetobacter baumannii OIFC065]
gi|421679600|ref|ZP_16119469.1| replicative DNA helicase [Acinetobacter baumannii OIFC111]
gi|421686309|ref|ZP_16126064.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|421691522|ref|ZP_16131181.1| replicative DNA helicase [Acinetobacter baumannii IS-116]
gi|421695085|ref|ZP_16134699.1| replicative DNA helicase [Acinetobacter baumannii WC-692]
gi|421698725|ref|ZP_16138264.1| replicative DNA helicase [Acinetobacter baumannii IS-58]
gi|421704201|ref|ZP_16143648.1| replicative DNA helicase [Acinetobacter baumannii ZWS1122]
gi|421707850|ref|ZP_16147234.1| replicative DNA helicase [Acinetobacter baumannii ZWS1219]
gi|421787320|ref|ZP_16223676.1| replicative DNA helicase [Acinetobacter baumannii Naval-82]
gi|421792876|ref|ZP_16229021.1| replicative DNA helicase [Acinetobacter baumannii Naval-2]
gi|421795490|ref|ZP_16231573.1| replicative DNA helicase [Acinetobacter baumannii Naval-21]
gi|421802373|ref|ZP_16238326.1| replicative DNA helicase [Acinetobacter baumannii Canada BC1]
gi|421804543|ref|ZP_16240453.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|421806845|ref|ZP_16242707.1| replicative DNA helicase [Acinetobacter baumannii OIFC035]
gi|424051800|ref|ZP_17789332.1| replicative DNA helicase [Acinetobacter baumannii Ab11111]
gi|424059439|ref|ZP_17796930.1| replicative DNA helicase [Acinetobacter baumannii Ab33333]
gi|424063347|ref|ZP_17800832.1| replicative DNA helicase [Acinetobacter baumannii Ab44444]
gi|425749984|ref|ZP_18867951.1| replicative DNA helicase [Acinetobacter baumannii WC-348]
gi|425751346|ref|ZP_18869294.1| replicative DNA helicase [Acinetobacter baumannii Naval-113]
gi|445405293|ref|ZP_21431270.1| replicative DNA helicase [Acinetobacter baumannii Naval-57]
gi|445444410|ref|ZP_21442978.1| replicative DNA helicase [Acinetobacter baumannii WC-A-92]
gi|445459997|ref|ZP_21447906.1| replicative DNA helicase [Acinetobacter baumannii OIFC047]
gi|445467792|ref|ZP_21450758.1| replicative DNA helicase [Acinetobacter baumannii OIFC338]
gi|445483728|ref|ZP_21456498.1| replicative DNA helicase [Acinetobacter baumannii Naval-78]
gi|445492645|ref|ZP_21460592.1| replicative DNA helicase [Acinetobacter baumannii AA-014]
gi|169148428|emb|CAM86294.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter baumannii AYE]
gi|183210291|gb|ACC57689.1| Replicative DNA helicase [Acinetobacter baumannii ACICU]
gi|213057719|gb|ACJ42621.1| replicative DNA helicase [Acinetobacter baumannii AB0057]
gi|213986488|gb|ACJ56787.1| replicative DNA helicase [Acinetobacter baumannii AB307-0294]
gi|260411105|gb|EEX04402.1| replicative DNA helicase [Acinetobacter baumannii ATCC 19606 = CIP
70.34]
gi|322507493|gb|ADX02947.1| dnaB [Acinetobacter baumannii 1656-2]
gi|323518611|gb|ADX92992.1| replicative DNA helicase [Acinetobacter baumannii TCDC-AB0715]
gi|332730573|gb|EGJ61889.1| replicative DNA helicase [Acinetobacter baumannii 6013150]
gi|332734334|gb|EGJ65461.1| replicative DNA helicase [Acinetobacter baumannii 6013113]
gi|332738077|gb|EGJ68961.1| replicative DNA helicase [Acinetobacter baumannii 6014059]
gi|333365383|gb|EGK47397.1| replicative DNA helicase [Acinetobacter baumannii AB210]
gi|342229413|gb|EGT94281.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|342230292|gb|EGT95133.1| replicative DNA helicase [Acinetobacter baumannii ABNIH2]
gi|342231419|gb|EGT96228.1| replicative DNA helicase [Acinetobacter baumannii ABNIH1]
gi|342239026|gb|EGU03443.1| replicative DNA helicase [Acinetobacter baumannii ABNIH4]
gi|347594267|gb|AEP06988.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii MDR-ZJ06]
gi|385877883|gb|AFI94978.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|395522746|gb|EJG10835.1| replicative DNA helicase [Acinetobacter baumannii OIFC137]
gi|395552387|gb|EJG18395.1| replicative DNA helicase [Acinetobacter baumannii OIFC143]
gi|395554154|gb|EJG20160.1| replicative DNA helicase [Acinetobacter baumannii OIFC189]
gi|395566139|gb|EJG27784.1| replicative DNA helicase [Acinetobacter baumannii OIFC109]
gi|395569044|gb|EJG29714.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|398327785|gb|EJN43916.1| replicative DNA helicase [Acinetobacter baumannii AC12]
gi|400206932|gb|EJO37903.1| replicative DNA helicase [Acinetobacter baumannii IS-123]
gi|400210282|gb|EJO41252.1| replicative DNA helicase [Acinetobacter baumannii Canada BC-5]
gi|400387033|gb|EJP50106.1| replicative DNA helicase [Acinetobacter baumannii Naval-18]
gi|400392686|gb|EJP59732.1| replicative DNA helicase [Acinetobacter baumannii Naval-81]
gi|404562131|gb|EKA67355.1| replicative DNA helicase [Acinetobacter baumannii IS-116]
gi|404566653|gb|EKA71795.1| replicative DNA helicase [Acinetobacter baumannii WC-692]
gi|404568911|gb|EKA74006.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|404572044|gb|EKA77089.1| replicative DNA helicase [Acinetobacter baumannii IS-58]
gi|404665356|gb|EKB33319.1| replicative DNA helicase [Acinetobacter baumannii Ab11111]
gi|404670177|gb|EKB38069.1| replicative DNA helicase [Acinetobacter baumannii Ab33333]
gi|404674524|gb|EKB42268.1| replicative DNA helicase [Acinetobacter baumannii Ab44444]
gi|407190595|gb|EKE61811.1| replicative DNA helicase [Acinetobacter baumannii ZWS1122]
gi|407191350|gb|EKE62552.1| replicative DNA helicase [Acinetobacter baumannii ZWS1219]
gi|407901881|gb|AFU38712.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|408505290|gb|EKK07015.1| replicative DNA helicase [Acinetobacter baumannii IS-235]
gi|408507722|gb|EKK09416.1| replicative DNA helicase [Acinetobacter baumannii OIFC0162]
gi|408511831|gb|EKK13478.1| replicative DNA helicase [Acinetobacter baumannii Naval-72]
gi|408514989|gb|EKK16588.1| replicative DNA helicase [Acinetobacter baumannii IS-251]
gi|408694045|gb|EKL39633.1| replicative DNA helicase [Acinetobacter baumannii OIFC074]
gi|408695661|gb|EKL41216.1| replicative DNA helicase [Acinetobacter baumannii OIFC098]
gi|408699143|gb|EKL44623.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|408706313|gb|EKL51637.1| replicative DNA helicase [Acinetobacter baumannii Naval-13]
gi|408706494|gb|EKL51812.1| replicative DNA helicase [Acinetobacter baumannii Naval-83]
gi|408712860|gb|EKL58043.1| replicative DNA helicase [Acinetobacter baumannii OIFC110]
gi|409985910|gb|EKO42112.1| replicative DNA helicase,chromosome replication, chain elongation
[Acinetobacter baumannii AC30]
gi|410380429|gb|EKP33015.1| replicative DNA helicase [Acinetobacter baumannii OIFC065]
gi|410390776|gb|EKP43156.1| replicative DNA helicase [Acinetobacter baumannii OIFC111]
gi|410398967|gb|EKP51170.1| replicative DNA helicase [Acinetobacter baumannii Naval-2]
gi|410401987|gb|EKP54122.1| replicative DNA helicase [Acinetobacter baumannii Naval-21]
gi|410404170|gb|EKP56243.1| replicative DNA helicase [Acinetobacter baumannii Canada BC1]
gi|410407757|gb|EKP59734.1| replicative DNA helicase [Acinetobacter baumannii Naval-82]
gi|410411914|gb|EKP63783.1| replicative DNA helicase [Acinetobacter baumannii WC-A-694]
gi|410417388|gb|EKP69158.1| replicative DNA helicase [Acinetobacter baumannii OIFC035]
gi|425487386|gb|EKU53744.1| replicative DNA helicase [Acinetobacter baumannii WC-348]
gi|425500289|gb|EKU66314.1| replicative DNA helicase [Acinetobacter baumannii Naval-113]
gi|444761738|gb|ELW86120.1| replicative DNA helicase [Acinetobacter baumannii WC-A-92]
gi|444763884|gb|ELW88220.1| replicative DNA helicase [Acinetobacter baumannii AA-014]
gi|444768296|gb|ELW92513.1| replicative DNA helicase [Acinetobacter baumannii Naval-78]
gi|444773232|gb|ELW97328.1| replicative DNA helicase [Acinetobacter baumannii OIFC047]
gi|444775971|gb|ELX00024.1| replicative DNA helicase [Acinetobacter baumannii OIFC338]
gi|444782043|gb|ELX05954.1| replicative DNA helicase [Acinetobacter baumannii Naval-57]
gi|452955960|gb|EME61354.1| replicative DNA helicase [Acinetobacter baumannii MSP4-16]
Length = 481
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|299769497|ref|YP_003731523.1| replicative DNA helicase [Acinetobacter oleivorans DR1]
gi|424744271|ref|ZP_18172569.1| replicative DNA helicase [Acinetobacter baumannii WC-141]
gi|298699585|gb|ADI90150.1| replicative DNA helicase [Acinetobacter oleivorans DR1]
gi|422943010|gb|EKU38041.1| replicative DNA helicase [Acinetobacter baumannii WC-141]
Length = 481
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|218291256|ref|ZP_03495240.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
gi|218238858|gb|EED06069.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1]
Length = 459
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 16/271 (5%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
F+ I+ Y + G+ G+ TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 181 FERIEQLYE-SDGNITGVPTGYSDLDRMTSGFQKSDLIIVAARPSVGKTAFALNIAQNVA 239
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSN 380
AG + S+E + +++L + F + + G+ + + G LSN
Sbjct: 240 VRAGLPVAIFSLEMSKDQLVQRML---CAEAFIDGHKLRNGTLDDEDWPKLSMGVTTLSN 296
Query: 381 TFSLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QRPVSQTETEYVSQ 438
+ I ++P ++ L K L HG+ +VID Y +L H +R + + +S
Sbjct: 297 SPIYIDDTPGITVPEMRSKLRRLK---LEHGLGFVVID-YLQLIHGRRMAGENRQQEISD 352
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR- 496
+ +K+ A+ + +A R + + P L DI S D ++R+
Sbjct: 353 ISRSLKQLARELEVPILALAQLSRSVEQRQDKRPMLSDIRESGSIEQDADVVAFLYRDDY 412
Query: 497 -DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+P+ + V+V + K RN G I FL
Sbjct: 413 YNPDTENPNVVEVIIAKQRNGPTGKIELVFL 443
>gi|350568445|ref|ZP_08936847.1| replicative DNA helicase DnaB [Propionibacterium avidum ATCC 25577]
gi|348661665|gb|EGY78348.1| replicative DNA helicase DnaB [Propionibacterium avidum ATCC 25577]
Length = 448
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 130/317 (41%), Gaps = 43/317 (13%)
Query: 236 YLGPGALKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEF-GIS 282
Y G G + ++V+ A+ LY + DY FDE++A R GD GI
Sbjct: 136 YQGQGEVADIVDAAQQTLYDVSTRKTSEDYHPLSELFENTFDELEAIEAR--GDAMAGIP 193
Query: 283 TGWRALNELYN-VLPGELTIVTGVPNSGKSEW-ID-ALICNINEHAGWKFVLCSMENKVR 339
TG+ L+EL N +PG++ IV P GKS +D A I H + S+E
Sbjct: 194 TGFTDLDELTNGFMPGQMIIVAARPAMGKSTLALDFARAAAIRNH--LAAAIFSLEMGRN 251
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVL 399
E +LL G R++ E++++ + S +DS P++ +
Sbjct: 252 EIVMRLLSAEAGIELQRMRSG----RLSEEDWQRMVDKTTQISSAPLFIDDS-PNLTMME 306
Query: 400 DLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457
AKA ++ ++ +VID + + V + E VS+ +K A+ V +
Sbjct: 307 IRAKARRMKQKFDLKLVVIDYMQLMTSGKKVESRQLE-VSEFSRQIKLLAKELEIPVVAL 365
Query: 458 AH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQV 508
+ P Q ++ + P + D+ S D I++HR P AG D +
Sbjct: 366 SQLNRGPEQRND---KKPMMSDLRESGSLEQDADVVILLHREDVYDKESPRAGEAD---I 419
Query: 509 CVRKVRNKVVGTIGEAF 525
V K RN T+ F
Sbjct: 420 IVAKHRNGPTRTVPVVF 436
>gi|417544844|ref|ZP_12195930.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|421667678|ref|ZP_16107740.1| replicative DNA helicase [Acinetobacter baumannii OIFC087]
gi|421669315|ref|ZP_16109342.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
gi|400382732|gb|EJP41410.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|410383624|gb|EKP36152.1| replicative DNA helicase [Acinetobacter baumannii OIFC087]
gi|410389058|gb|EKP41480.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
Length = 481
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|415883886|ref|ZP_11545915.1| replicative DNA helicase [Bacillus methanolicus MGA3]
gi|387591681|gb|EIJ83998.1| replicative DNA helicase [Bacillus methanolicus MGA3]
Length = 454
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 127/307 (41%), Gaps = 29/307 (9%)
Query: 241 ALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 296
A K ++E A+ N +D +D I+ ++R GD G+ TG+R L+++
Sbjct: 143 AEKRILEVAQRKNAGTFHNIKDVLVRTYDNIEMLHNR-KGDITGLETGFRELDKMTAGFQ 201
Query: 297 -GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
+L IV P+ GK+ + + N+ G + S+E + ++L
Sbjct: 202 RNDLIIVAARPSVGKTAFALNIAQNVATKTGENIAIFSLEMGAEQLVMRML-------CA 254
Query: 356 EANYGGSAERM-TVEEFEQGK-----AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR- 408
E N R T+ + + GK LSN I D P I+ +K L+
Sbjct: 255 EGNINSQRLRTGTLTDEDWGKLTMAMGSLSNAGIFI----DDTPGIRISEIRSKCRRLKQ 310
Query: 409 -HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW 466
HG+ +VID + + + VS++ +K A+ V ++ R +
Sbjct: 311 EHGLGMVVIDYLQLIQGSGRPGENRQQEVSEISRSLKELARELEVPVIALSQLSRGVEQR 370
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEA 524
+ P + DI S D ++R+ + E+ D +++ + K RN VGT+ A
Sbjct: 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNKESENKDIIEIIIAKQRNGPVGTVELA 430
Query: 525 FLS-YNR 530
F+ YN+
Sbjct: 431 FIKEYNK 437
>gi|319941484|ref|ZP_08015812.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
gi|319805104|gb|EFW01934.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B]
Length = 465
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 118/280 (42%), Gaps = 31/280 (11%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHA 325
I+ Y +++ + G+S+G+ L+ + L G+L I+ G P+ GK+ + + N+
Sbjct: 183 IELYNTKSTSEVTGVSSGYPNLDHVTAGLQRGDLIIIAGRPSMGKTSFALNIAENVGVDQ 242
Query: 326 GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----WLSNT 381
+ SME + A++++ S R+ ++ +G+ W + T
Sbjct: 243 ELPVAVFSMEMGADQLAQRMI--------------SSVGRIDAQKLRKGQLDDEDWDNFT 288
Query: 382 FSLIRCEN-----DSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVSQTE 432
+L R E D P +I + + V + G GLV+ Y +L +R
Sbjct: 289 AALHRLEEKPIYIDDTPGLTISELTSRTRRLVNQAGPLGLVVIDYIQLMSGQRRSNQDNR 348
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ +S++ +K A+ V ++ R + + + P + D+ S D +
Sbjct: 349 AQELSEISRGLKSLAKELGVPVIALSQLNRSVDSRTDKRPVMSDLRESGAIEQDADVIMF 408
Query: 492 IHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFLSYN 529
I+R+ +D+ ++ V K RN +GT+ FL N
Sbjct: 409 IYRDVVYNKETVDKNLAEIIVAKQRNGPIGTLRMTFLGGN 448
>gi|148912819|ref|YP_001293398.1| Putative DnaB-like replicative helicase [Pseudomonas phage F10]
Length = 476
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 119/288 (41%), Gaps = 30/288 (10%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSE----WIDALI 318
D ID ++R + G TG +L+ + PG + +V G P SGK+ + + +
Sbjct: 180 IDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAERVA 237
Query: 319 CNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
NE A + + N+V + KHI + A+ V +
Sbjct: 238 LACNEPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWPGLTGAVNKL---- 293
Query: 376 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
N LI C++ SL +++ + + + HG+ GLV Y L + + +
Sbjct: 294 ----NHAPLILCDDASL-TLRDIRQICRTVKREHGL-GLVAVDYIGLIKGEQRNASRYDV 347
Query: 436 VSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
V+++ +KR A+ V +A P+ N + P D+ S D ++
Sbjct: 348 VTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEADADVVVL 404
Query: 492 IHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 539
+HR+++ +AG ++ V K R+ G +G A + + +++I+
Sbjct: 405 VHRDQESDAGKAGITELIVDKNRH---GQVGVAHVQHQGQYHRFVEII 449
>gi|359427665|ref|ZP_09218712.1| replicative DNA helicase [Acinetobacter sp. NBRC 100985]
gi|358236888|dbj|GAB00251.1| replicative DNA helicase [Acinetobacter sp. NBRC 100985]
Length = 481
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KMDGNITGLSTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRSRARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|224052721|ref|XP_002193128.1| PREDICTED: twinkle protein, mitochondrial-like, partial
[Taeniopygia guttata]
Length = 495
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 45/294 (15%)
Query: 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNK 102
E +A F ++ TL+R V R +V FP++ + KL+ + +
Sbjct: 134 KETKALFGISQVTDATLKRFGVRYLRTARSLV--FPWFSPQDASLKGLKLLRVEKKGGTI 191
Query: 103 KFWQEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
+ +E D+ + +GL I ++++++ E+D L++ +A + +++P GA S +
Sbjct: 192 TYVEETLPRFDSYRNLFGLPLIGRRDTELVLTGWELDALALHQAAGVASLALPRGA-SCL 250
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+P YL+Q RI L D A+ AR++ +RC VR
Sbjct: 251 PPTLLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLSLKRCSLVR 294
Query: 218 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 277
P + N+ L + +++ +A L + +FR +E+ +
Sbjct: 295 -PGNLQPRPLEALNQGL------NVTKILRSALLASHKSIISFRQLREEV---FGELVNT 344
Query: 278 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGW 327
E W EL +L G ELTI TG SGK+ +I ++ W
Sbjct: 345 EQVSGVKWARFPELNKLLKGHRRGELTIFTGPTGSGKTTFISEYALDLCRLGVW 398
>gi|17546030|ref|NP_519432.1| replicative DNA helicase [Ralstonia solanacearum GMI1000]
gi|17428325|emb|CAD15013.1| probable replicative dna helicase protein [Ralstonia solanacearum
GMI1000]
Length = 473
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 118/292 (40%), Gaps = 45/292 (15%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR D G+ TG+ L+ + + + G +L IV G P+ GK+ A NI
Sbjct: 189 ERIDELYHRDNQSDITGVPTGFVDLDRMTSGMQGGDLIIVAGRPSMGKT----AFSLNIG 244
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS R+ G+
Sbjct: 245 EHVAVEQGLPVAVFSMEMAGTQLAMRML--------------GSVGRLDQHRLRTGRLLD 290
Query: 377 --WLSNTFSLIRCEN-----DSLPSIKWV--LDLAKAAVLRHGVRGLVIDPYNEL-DHQR 426
W T ++ + + D P++ + ++ + G GL+I Y +L
Sbjct: 291 EDWPRLTHAIQKMNDAQLFIDETPALNPMELRARSRRLARQCGQLGLIIIDYLQLMSGSG 350
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINK 485
+ +S++ +K A+ C V ++ R L + P + D+ S
Sbjct: 351 GGGENRATEISEISRSLKGLAKELNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQD 410
Query: 486 CDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R++ +P++ ++ + K RN +GT+ FL GEY
Sbjct: 411 ADVILFIYRDQVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTFL------GEY 456
>gi|422322219|ref|ZP_16403261.1| DnaB protein [Achromobacter xylosoxidans C54]
gi|317402868|gb|EFV83410.1| DnaB protein [Achromobacter xylosoxidans C54]
Length = 460
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 179 ERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS + GK
Sbjct: 235 EHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLIA 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 281 EDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGNG 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 341 SGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ + K RN +GT+ F
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGTVRLTF 441
>gi|218889547|ref|YP_002438411.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
LESB58]
gi|218769770|emb|CAW25530.1| Putative DnaB-like replicative helicase [Pseudomonas aeruginosa
LESB58]
Length = 464
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 111/271 (40%), Gaps = 27/271 (9%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSE----WIDA 316
+ D ID ++R + G TG +L+ + PG + +V G P SGK+ + +
Sbjct: 166 EAIDGIDRRFNREV--KLGYDTGLPSLDAFIPGICPGHMVVVAGEPGSGKTTLGLGFAER 223
Query: 317 LICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
+ NE A + + N+V + KHI + A+ V +
Sbjct: 224 VALACNEPALVFSLEMTDVELANRVLSSVGSVPLKHIAEGHSMADSDWPGLTGAVNKL-- 281
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
N LI C++ SL +++ + + + HG+ G+V Y L + +
Sbjct: 282 ------NDAPLILCDDASL-TLRDIRQICRTVKREHGL-GMVAVDYIGLIKGEQRNASRY 333
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
+ V+++ +KR A+ V +A P+ N + P D+ S D
Sbjct: 334 DVVTEISKGLKRLAKELGVPVVVLAQLNRGPKARGN---KRPTKSDLRDSGQIEADADVV 390
Query: 490 IVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520
+++HR+++ +AG ++ V K R+ VG
Sbjct: 391 VLVHRDQESDAGKAGITELIVDKNRHGQVGV 421
>gi|402818216|ref|ZP_10867801.1| replicative DNA helicase [Paenibacillus alvei DSM 29]
gi|402504307|gb|EJW14837.1| replicative DNA helicase [Paenibacillus alvei DSM 29]
Length = 427
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 59/283 (20%), Positives = 120/283 (42%), Gaps = 30/283 (10%)
Query: 259 NFRDYFDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDA 316
F+DY ++ Y + SG+ TG++ +++ + + L ++ P +GK+
Sbjct: 150 TFKDYL--LEYYEDKLSGEIKNTPLTGFQDIDKWMQGIGDNRLIVLAARPGTGKTAIALQ 207
Query: 317 LICNINEHAGWKF-VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV------- 368
++ NI + + V S+E +E +L+ A+ GG +M +
Sbjct: 208 ILRNIAKQKEFGVPVFFSLEMARKELTDRLV----------ASIGGLNAKMVMRNEFNDE 257
Query: 369 --EEFEQG-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG-VRGLVIDPYNELDH 424
E F + A S TF + ++ S ++ ++ A +HG + + ID +D
Sbjct: 258 QRERFAKAVDALRSMTFHI---DDRSRINVNYIKRKCLALKRKHGKLSCIFIDYLGLIDM 314
Query: 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFIN 484
Q ++ E ++++ +K FA C ++ +A + PP + D+ GS
Sbjct: 315 QTGKNEAPHEAIARVTRELKIFASEIGCSIFLLAQLNRASEREKRPPIMSDLRGSGAIEQ 374
Query: 485 KCDNGIVIHRNRDPEAGPID-RVQVCVRKVRNKVVGTIGEAFL 526
D I ++ + + + I+ +V V K R +GT G F+
Sbjct: 375 DADMIIFLYDHDENDKEKIETKVDFIVAKGRQTGIGTFGLTFV 417
>gi|388455841|ref|ZP_10138136.1| replicative DNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 460
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 71/287 (24%), Positives = 123/287 (42%), Gaps = 40/287 (13%)
Query: 265 DEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
++IDA YH +GD G++TG L+E+ + L P +L IV G P+ GK+ L+ N+
Sbjct: 180 EKIDALYH--NGDAITGLATGLSDLDEMTSGLQPSDLIIVAGRPSMGKT----TLVMNMA 233
Query: 323 EHAGWK----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE----RMT--VEEFE 372
EHA K ++ SME A +++ + + G + R+T V
Sbjct: 234 EHAAIKSGKPVLVFSMEMPADSLAMRMMSSLGRIDQHKIRTGKLDDDDWPRVTSAVHMLS 293
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQ 430
+ ++ +T +L E + A+ HG GL++ Y +L + P +
Sbjct: 294 EAPLFIDDTPALSPGEMRA---------RARRLAKEHGNIGLIVVDYLQL-MKVPGFNAD 343
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ V ++ R L + P + D+ S D
Sbjct: 344 NRTAEISEISRSLKSLAKELQAPVIALSQLNRSLEQRADKRPVMSDLRESGAIEQDADLI 403
Query: 490 IVIHR----NRD-PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
I+R N D P+ G ++ + K RN +G + AF+ Y R
Sbjct: 404 CFIYRDEVYNEDSPDKG---TAEIIIAKQRNGPIGKVRVAFIGKYTR 447
>gi|422864817|ref|ZP_16911442.1| DNA replication protein DnaC [Streptococcus sanguinis SK1058]
gi|327490393|gb|EGF22179.1| DNA replication protein DnaC [Streptococcus sanguinis SK1058]
Length = 451
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 196 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 254
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDISETANR 156
Query: 255 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 309
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFGNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 370 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 422
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 481
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 482 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 521
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|164688684|ref|ZP_02212712.1| hypothetical protein CLOBAR_02330 [Clostridium bartlettii DSM
16795]
gi|164602160|gb|EDQ95625.1| replicative DNA helicase [Clostridium bartlettii DSM 16795]
Length = 435
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 112/251 (44%), Gaps = 28/251 (11%)
Query: 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337
GI TG+ L+ L + G LT++TG P +GKS +++ +I N + G+ L S E
Sbjct: 165 GILTGFAGLDALLGDGLNFGTLTVLTGSPGAGKSTFLNQIIANAISN-GFNSFLYSGE-L 222
Query: 338 VREHARKLLEKHIKKPFFEANYG---GSAERMTVEEFEQGKAWLSNTFSLIRCENDS-LP 393
E + + P NY G +++ E E W+ + E +
Sbjct: 223 TYEMCMDWFTRTVANPQHLLNYTSNMGKYAKVSDEGLEMITQWVDDKLFFYSKEAKADEA 282
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM--VKRFAQHHA 451
+I ++ + V+ V+D LD +Y Q++ + +KR A+ +
Sbjct: 283 NISHAIEYLAT---KKNVKLFVLDNLMTLD-----CSGNDKYEKQIIAVKSLKRLAKKYK 334
Query: 452 CHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-NRDPEAGPIDRVQVCV 510
+ VAH + ++ + + P++++ISG++ N D + R R+PE ++ V
Sbjct: 335 IVIVLVAHSNK-NSMMNKEPHVFEISGASEIPNLADYVLKASREGREPET------ELFV 387
Query: 511 RKVRNKVVGTI 521
++N++ G+I
Sbjct: 388 --LKNRITGSI 396
>gi|89101208|ref|ZP_01174037.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
gi|89084076|gb|EAR63248.1| replicative DNA helicase [Bacillus sp. NRRL B-14911]
Length = 454
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 24/353 (6%)
Query: 193 GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
G P A E AR V + R +R D + +EV + LG A K ++E A+
Sbjct: 94 GSVPTAANIEYYARIVEEKSLLRRLIRTATGIAQDGYSREDEVEVLLGE-AEKNILEVAQ 152
Query: 251 LYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGV 305
N +D +D I+ ++R GD GI TG+ L+++ +L IV
Sbjct: 153 RKNAGAFHNIKDVLVRTYDNIEVMHNR-KGDITGIPTGFAELDKMTAGFQRNDLIIVGAR 211
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA 363
P+ GK+ + + N+ + S+E + ++L E +I GS
Sbjct: 212 PSVGKTAFALNIAQNVATKTNENIAIFSLEMGAEQLVMRMLCAEGNIDAQRLRT---GSL 268
Query: 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNE 421
+ LSN I D P ++ +K L+ HG+ ++ID
Sbjct: 269 TDDDWGKLTMAMGSLSNAGIFI----DDTPGVRITEIRSKCRRLKQEHGLGMILIDYLQL 324
Query: 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSA 480
+ + + VS++ +K A+ V ++ R + + P + DI S
Sbjct: 325 ILGSGRSGENRQQEVSEISRSLKALARELQVPVIALSQLSRGVEQRQDKRPMMSDIRESG 384
Query: 481 HFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
D ++R+ D E+ + +++ + K RN VGT+ AF+ YN+
Sbjct: 385 SIEQDADIVAFLYRDDYYDKESEDKNIIEIIIAKQRNGPVGTVQLAFVKEYNK 437
>gi|260549411|ref|ZP_05823630.1| replicative DNA helicase;chromosome replication [Acinetobacter sp.
RUH2624]
gi|424055116|ref|ZP_17792639.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|425742474|ref|ZP_18860583.1| replicative DNA helicase [Acinetobacter baumannii WC-487]
gi|445430831|ref|ZP_21438590.1| replicative DNA helicase [Acinetobacter baumannii OIFC021]
gi|260407520|gb|EEX00994.1| replicative DNA helicase;chromosome replication [Acinetobacter sp.
RUH2624]
gi|407439041|gb|EKF45583.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|425486980|gb|EKU53340.1| replicative DNA helicase [Acinetobacter baumannii WC-487]
gi|444760459|gb|ELW84909.1| replicative DNA helicase [Acinetobacter baumannii OIFC021]
Length = 481
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTEVRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMHCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|125719130|ref|YP_001036263.1| replicative DNA helicase [Streptococcus sanguinis SK36]
gi|323350800|ref|ZP_08086459.1| DNA replication protein DnaC [Streptococcus sanguinis VMC66]
gi|401681775|ref|ZP_10813671.1| replicative DNA helicase [Streptococcus sp. AS14]
gi|422822754|ref|ZP_16870947.1| DNA replication protein DnaC [Streptococcus sanguinis SK353]
gi|422822841|ref|ZP_16871030.1| DNA replication protein DnaC [Streptococcus sanguinis SK405]
gi|422825196|ref|ZP_16873375.1| DNA replication protein DnaC [Streptococcus sanguinis SK678]
gi|422847852|ref|ZP_16894535.1| DNA replication protein DnaC [Streptococcus sanguinis SK72]
gi|422849763|ref|ZP_16896439.1| DNA replication protein DnaC [Streptococcus sanguinis SK115]
gi|422850447|ref|ZP_16897117.1| DNA replication protein DnaC [Streptococcus sanguinis SK150]
gi|422852661|ref|ZP_16899325.1| DNA replication protein DnaC [Streptococcus sanguinis SK160]
gi|422856271|ref|ZP_16902928.1| DNA replication protein DnaC [Streptococcus sanguinis SK1]
gi|422857276|ref|ZP_16903926.1| DNA replication protein DnaC [Streptococcus sanguinis SK1057]
gi|422861141|ref|ZP_16907783.1| DNA replication protein DnaC [Streptococcus sanguinis SK330]
gi|422863825|ref|ZP_16910455.1| DNA replication protein DnaC [Streptococcus sanguinis SK408]
gi|422872041|ref|ZP_16918534.1| DNA replication protein DnaC [Streptococcus sanguinis SK1087]
gi|422877662|ref|ZP_16924132.1| DNA replication protein DnaC [Streptococcus sanguinis SK1056]
gi|422880521|ref|ZP_16926984.1| DNA replication protein DnaC [Streptococcus sanguinis SK1059]
gi|422882987|ref|ZP_16929436.1| DNA replication protein DnaC [Streptococcus sanguinis SK49]
gi|422929950|ref|ZP_16962890.1| DNA replication protein DnaC [Streptococcus sanguinis ATCC 29667]
gi|422930465|ref|ZP_16963396.1| DNA replication protein DnaC [Streptococcus sanguinis SK340]
gi|125499047|gb|ABN45713.1| Replicative DNA helicase, putative [Streptococcus sanguinis SK36]
gi|322122974|gb|EFX94677.1| DNA replication protein DnaC [Streptococcus sanguinis VMC66]
gi|324989551|gb|EGC21497.1| DNA replication protein DnaC [Streptococcus sanguinis SK353]
gi|324991893|gb|EGC23816.1| DNA replication protein DnaC [Streptococcus sanguinis SK405]
gi|324996217|gb|EGC28127.1| DNA replication protein DnaC [Streptococcus sanguinis SK678]
gi|325686449|gb|EGD28478.1| DNA replication protein DnaC [Streptococcus sanguinis SK72]
gi|325689327|gb|EGD31333.1| DNA replication protein DnaC [Streptococcus sanguinis SK115]
gi|325695733|gb|EGD37632.1| DNA replication protein DnaC [Streptococcus sanguinis SK150]
gi|325698061|gb|EGD39942.1| DNA replication protein DnaC [Streptococcus sanguinis SK160]
gi|327458518|gb|EGF04868.1| DNA replication protein DnaC [Streptococcus sanguinis SK1]
gi|327463807|gb|EGF10123.1| DNA replication protein DnaC [Streptococcus sanguinis SK1057]
gi|327467653|gb|EGF13150.1| DNA replication protein DnaC [Streptococcus sanguinis SK330]
gi|327471580|gb|EGF17023.1| DNA replication protein DnaC [Streptococcus sanguinis SK408]
gi|328945146|gb|EGG39301.1| DNA replication protein DnaC [Streptococcus sanguinis SK1087]
gi|332359524|gb|EGJ37343.1| DNA replication protein DnaC [Streptococcus sanguinis SK1056]
gi|332363577|gb|EGJ41358.1| DNA replication protein DnaC [Streptococcus sanguinis SK1059]
gi|332364136|gb|EGJ41913.1| DNA replication protein DnaC [Streptococcus sanguinis SK49]
gi|339613583|gb|EGQ18319.1| DNA replication protein DnaC [Streptococcus sanguinis ATCC 29667]
gi|339621250|gb|EGQ25813.1| DNA replication protein DnaC [Streptococcus sanguinis SK340]
gi|400185780|gb|EJO20005.1| replicative DNA helicase [Streptococcus sp. AS14]
Length = 451
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 143/347 (41%), Gaps = 33/347 (9%)
Query: 196 PGQALAEELARRVGRERCWRVRWPKKND-VDHFKDANEVLMYLGPGALKEVVENAELYPI 254
P A AE A+ V + R + + ++ D + + + GA K +++ +E
Sbjct: 97 PTSANAEYYAKIVAEKAILRRLISRLTESINQAYDGDRLSEEIIAGAEKALIDVSETANR 156
Query: 255 MGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSG 309
G N RD F ++A +TS D GI+TG+R L+++ L EL I+ P G
Sbjct: 157 SGFKNIRDVLNLNFGNLEARSLQTS-DITGIATGYRELDKMTTGLHEEELIILAARPAVG 215
Query: 310 KSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369
K+ A NI ++ G K + A L+++ + ++ ++T E
Sbjct: 216 KT----AFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLASEGVINSHSIRTGQLTDE 271
Query: 370 EFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNEL-- 422
E+++ A L+N I D P I+ ++A L G GLV+ Y +L
Sbjct: 272 EWQKYTIATANLANASIYI----DDTPGIRITEIRSRARKLAQETGNLGLVLIDYLQLIT 327
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 481
R Q E +S+ L K A+ V ++ R + + P L DI S
Sbjct: 328 GTGRENRQQEVSEISRQL---KILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGS 384
Query: 482 FINKCDNGIVIHRN-------RDPEAGPIDRVQVCVRKVRNKVVGTI 521
D ++R+ + E P ++V+V + K R+ GT+
Sbjct: 385 IEQDADIVAFLYRDDYYDRAGEEEEGIPNNKVEVIIEKNRSGARGTV 431
>gi|147678499|ref|YP_001212714.1| DNA primase [Pelotomaculum thermopropionicum SI]
gi|146274596|dbj|BAF60345.1| DNA primase [Pelotomaculum thermopropionicum SI]
Length = 315
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 25/136 (18%)
Query: 81 VIAFPYW-RNGKLVNCKYRDF-NKKFWQEKDTEKV---FYGLDDI--EGESDIIIVEGEM 133
+ FP++ R G+LVN K+R +K+FW D + V Y L+ I G+ +VE E+
Sbjct: 157 AVTFPWYDRQGRLVNVKFRSVTDKRFWFYGDGQPVGDHVYALNFIYKAGKRLAYVVESEI 216
Query: 134 DKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDG 193
D +++ +AGF ++ N+ +++ Q C +++ATD
Sbjct: 217 DAITLWQAGFPAV---------ALGGANLSPRQRELIIQSPLEC---------LVVATDN 258
Query: 194 DPPGQALAEELARRVG 209
D G+ +A +A ++G
Sbjct: 259 DKAGRRIARTIAGQLG 274
>gi|300791103|ref|YP_003771394.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
gi|384154648|ref|YP_005537464.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|399542982|ref|YP_006555643.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|299800617|gb|ADJ50992.1| replicative DNA helicase [Amycolatopsis mediterranei U32]
gi|340532802|gb|AEK48007.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
gi|398323752|gb|AFO82699.1| replicative DNA helicase [Amycolatopsis mediterranei S699]
Length = 469
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 32/311 (10%)
Query: 242 LKEVVENAE--LYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ A+ +Y + DY DEIDA R G GI TG+ +
Sbjct: 162 IDEVVDRAQAAIYDVTERRTSEDYVALEELLQPTMDEIDAIASR-GGQSQGIPTGFTDFD 220
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
EL N L PG++ IV P GKS + + G V+ S+E E ++L
Sbjct: 221 ELTNGLHPGQMIIVAARPGVGKSTLGLDFARSASIRHGLTSVIFSLEMSRTEIVMRMLSA 280
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
K + G +M+ +++ + +S +DS P++ + AKA L
Sbjct: 281 EAKIRLADMRGG----KMSDDDWTRLARRMSEVSEAPLFVDDS-PNMTMMEIRAKARRLK 335
Query: 408 -RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 465
R+ ++ +V+D + + V + E VS+ +K A+ V ++ R
Sbjct: 336 QRNDLKLVVLDYLQLMTSGKRVESRQQE-VSEFSRQMKLLAKEIEVPVIAISQLNRGPEQ 394
Query: 466 WVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVVGT 520
+ P L D+ S D I+++R DP AG D + + K R T
Sbjct: 395 RTDKRPMLSDLRESGSLEQDADLVILVNRPDAWERDDPRAGEAD---LIIAKHRAGPTAT 451
Query: 521 IGEAF-LSYNR 530
I A L Y+R
Sbjct: 452 ITVAHQLHYSR 462
>gi|91204549|emb|CAJ70777.1| strongly similar to replicative DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 447
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 122/286 (42%), Gaps = 35/286 (12%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALI 318
++ F I+ + R S G+STG+ ++L + P EL IV P+ GK+ + +
Sbjct: 167 LKETFSRIENLHDRES-RLTGLSTGFYDFDDLTCGLQPSELVIVAARPSMGKTSF----V 221
Query: 319 CNINEHAGW----KFVLCSMENKVREHARKLLEKH-------IKKPFFEANYGGSAERMT 367
NI EH G + SME ++ A+ +L H ++K F E + +R+
Sbjct: 222 MNIIEHIGVVEKKPAAIFSMEMSAQQLAQNMLCSHSKIDAHKLRKGFLEDD-----DRLW 276
Query: 368 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQ 425
G LS I + P + + AKA L+ + ++ + +D Y +L +
Sbjct: 277 -SALSNGLGSLSEAPIFI----EDTPGLTVLEVRAKARRLKAQYDIQLIAVD-YLQL-ME 329
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
P + + +S + +K A+ A V V+ R + + G P + D+ S
Sbjct: 330 SPRGENRQQEISIISRGLKSLARELAIPVIAVSQLNRSVESREGHRPRMSDLRESGSIEQ 389
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSY 528
D ++HR +PE ++ + K RN GTI FLS+
Sbjct: 390 DADVIALLHREDYFNPEKKD-GTAELIIAKQRNGPTGTIKLTFLSH 434
>gi|169631968|ref|YP_001705617.1| replicative DNA helicase [Mycobacterium abscessus ATCC 19977]
gi|419710348|ref|ZP_14237814.1| replicative DNA helicase [Mycobacterium abscessus M93]
gi|420866385|ref|ZP_15329774.1| replicative DNA helicase [Mycobacterium abscessus 4S-0303]
gi|420871176|ref|ZP_15334558.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RA]
gi|420875626|ref|ZP_15339002.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RB]
gi|420912571|ref|ZP_15375883.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-R]
gi|420919025|ref|ZP_15382328.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|420924195|ref|ZP_15387491.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|420929854|ref|ZP_15393133.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|420969548|ref|ZP_15432751.1| replicative DNA helicase [Mycobacterium abscessus 3A-0810-R]
gi|420980192|ref|ZP_15443369.1| replicative DNA helicase [Mycobacterium abscessus 6G-0212]
gi|420985577|ref|ZP_15448744.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|420988359|ref|ZP_15451515.1| replicative DNA helicase [Mycobacterium abscessus 4S-0206]
gi|421009710|ref|ZP_15472819.1| replicative DNA helicase [Mycobacterium abscessus 3A-0119-R]
gi|421015751|ref|ZP_15478825.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-R]
gi|421020842|ref|ZP_15483898.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-S]
gi|421026252|ref|ZP_15489295.1| replicative DNA helicase [Mycobacterium abscessus 3A-0731]
gi|421031232|ref|ZP_15494262.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-R]
gi|421037199|ref|ZP_15500216.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-S]
gi|421041930|ref|ZP_15504938.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-R]
gi|421045976|ref|ZP_15508976.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-S]
gi|169243935|emb|CAM64963.1| Replicative DNA helicase [Contains: Endonuclease PI-MtuHIP (Mtu
DnaB intein)] [Mycobacterium abscessus]
gi|382941180|gb|EIC65500.1| replicative DNA helicase [Mycobacterium abscessus M93]
gi|392065101|gb|EIT90950.1| replicative DNA helicase [Mycobacterium abscessus 4S-0303]
gi|392067101|gb|EIT92949.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RB]
gi|392070646|gb|EIT96493.1| replicative DNA helicase [Mycobacterium abscessus 4S-0726-RA]
gi|392111916|gb|EIU37686.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|392114565|gb|EIU40334.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-R]
gi|392126842|gb|EIU52593.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|392128848|gb|EIU54598.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|392164470|gb|EIU90159.1| replicative DNA helicase [Mycobacterium abscessus 6G-0212]
gi|392170573|gb|EIU96251.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|392182638|gb|EIV08289.1| replicative DNA helicase [Mycobacterium abscessus 4S-0206]
gi|392195316|gb|EIV20935.1| replicative DNA helicase [Mycobacterium abscessus 3A-0119-R]
gi|392196386|gb|EIV22004.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-R]
gi|392206565|gb|EIV32148.1| replicative DNA helicase [Mycobacterium abscessus 3A-0122-S]
gi|392209775|gb|EIV35347.1| replicative DNA helicase [Mycobacterium abscessus 3A-0731]
gi|392219114|gb|EIV44639.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-R]
gi|392221051|gb|EIV46575.1| replicative DNA helicase [Mycobacterium abscessus 3A-0930-S]
gi|392222858|gb|EIV48381.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-R]
gi|392235429|gb|EIV60927.1| replicative DNA helicase [Mycobacterium abscessus 4S-0116-S]
gi|392245204|gb|EIV70682.1| replicative DNA helicase [Mycobacterium abscessus 3A-0810-R]
Length = 458
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 35/303 (11%)
Query: 242 LKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ AE+Y + DY DEIDA G G+ TG+ L+
Sbjct: 152 VAEVVDRAQAEVYDVTDRRMSEDYVPLEELLQPTMDEIDAIAS-AGGISKGVPTGFTDLD 210
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICNINEHAGWKFVLCSMENKVREHARKLL 346
E+ N L PG++ IV P GKS +D + C+I V+ S+E E +LL
Sbjct: 211 EITNGLHPGQMIIVAARPGVGKSTLGLDFMRSCSIKHQ--LPSVIFSLEMSKTEIVMRLL 268
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
K + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 269 SAEAKIKLGDMRSG----RMSDDDWTRLARRMSEISEAPLYIDDS-PNLTMMEIRAKARR 323
Query: 407 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
L + G++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 324 LNQKAGLKLVVVD-YLQLMTSGKKHESRQQEVSEFSRNLKLLAKELEVPVIAISQLNRGP 382
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 518
+ P + D+ S D I++HR DP G D + + K RN
Sbjct: 383 EQRTDKRPQVSDLRESGSLEQDADMVILLHRPDAFERDDPRGGEAD---LILGKHRNGPT 439
Query: 519 GTI 521
TI
Sbjct: 440 ATI 442
>gi|163784037|ref|ZP_02178994.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
gi|159880694|gb|EDP74241.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1]
Length = 486
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 28/262 (10%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G+ +G+ L+ L PG+L IV P GK+ + +++ N++ S+E
Sbjct: 183 GLPSGFYELDRLTTGFHPGDLIIVAARPAMGKTSFALSILHNVSIVENKPSAFFSLEMSK 242
Query: 339 REHARKLLEKHIKKPFFEANYG----GSAERMTVEEFEQGKA--WLSNTFSLIRCENDSL 392
+ A +LL K P + G E++T + E A ++ +T SL
Sbjct: 243 EQIAMRLLCNETKIPLRKVRSGFLTKEELEKITEKSLEMASAPIYVDDTASL-------- 294
Query: 393 PSIKWVLDL-AKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+LDL AKA L+ ++ +V+D + R V + E V+++ +K A+
Sbjct: 295 ----SILDLRAKARKLKREKDIQLVVVDYLQLMRSSRRVENRQQE-VAEISRGLKGLAKD 349
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
V +A RQ + P L D+ S D + IHR ++P
Sbjct: 350 LNIPVIALAQLSRQAELRSDKRPQLADLRESGSIEQDADMVMFIHRPEYYKKNPTPEEEG 409
Query: 505 RVQVCVRKVRNKVVGTIGEAFL 526
++ + K RN GT+ AF+
Sbjct: 410 IAEIIIAKQRNGPTGTVKLAFI 431
>gi|418423105|ref|ZP_12996274.1| replicative DNA helicase/endonuclease PI-MtuHIP [Mycobacterium
abscessus subsp. bolletii BD]
gi|363993080|gb|EHM14306.1| replicative DNA helicase/endonuclease PI-MtuHIP [Mycobacterium
abscessus subsp. bolletii BD]
Length = 431
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 125/303 (41%), Gaps = 35/303 (11%)
Query: 242 LKEVVE--NAELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ AE+Y + DY DEIDA G G+ TG+ L+
Sbjct: 125 VAEVVDRAQAEVYDVTDRRMSEDYVPLEELLQPTMDEIDAIAS-AGGISKGVPTGFTDLD 183
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICNINEHAGWKFVLCSMENKVREHARKLL 346
E+ N L PG++ IV P GKS +D + C+I V+ S+E E +LL
Sbjct: 184 EITNGLHPGQMIIVAARPGVGKSTLGLDFMRSCSIKHQ--LPSVIFSLEMSKTEIVMRLL 241
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
K + G RM+ +++ + +S +DS P++ + AKA
Sbjct: 242 SAEAKIKLGDMRSG----RMSDDDWTRLARRMSEISEAPLYIDDS-PNLTMMEIRAKARR 296
Query: 407 L--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
L + G++ +V+D Y +L ++ + VS+ +K A+ V ++ R
Sbjct: 297 LNQKAGLKLVVVD-YLQLMTSGKKHESRQQEVSEFSRNLKLLAKELEVPVIAISQLNRGP 355
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDPEAGPIDRVQVCVRKVRNKVV 518
+ P + D+ S D I++HR DP G D + + K RN
Sbjct: 356 EQRTDKRPQVSDLRESGSLEQDADMVILLHRPDAFERDDPRGGEAD---LILGKHRNGPT 412
Query: 519 GTI 521
TI
Sbjct: 413 ATI 415
>gi|307213491|gb|EFN88900.1| Twinkle protein, mitochondrial [Harpegnathos saltator]
Length = 479
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 141/363 (38%), Gaps = 40/363 (11%)
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVR---WPKKNDVDHFKDANEVLMYL 237
L+ ++IL D P A++ A+++ +RC VR + + KD N
Sbjct: 128 LENFKKLILWFGNDEPSWYTAKQFAKKLNEKRCSFVRPIGTQPRPKLAADKDYN------ 181
Query: 238 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 297
LK ++ NA+ + F D +I + W+ L L G
Sbjct: 182 ----LKNILTNAQPIWHKSITTFDDLRQDILCDLQNIDRVQ---GVKWKRYPTLNRTLKG 234
Query: 298 ----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353
ELTI+TG GK+ ++ ++ G + S E + A+ +L++ I+
Sbjct: 235 HRRGELTILTGPTGCGKTTFMSEYSLDL-AMQGVNTLWGSFEIRNARLAKTMLQQMIEVS 293
Query: 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413
E +++F A + N + SIK V+D + A H +
Sbjct: 294 LEE----------NLDQFNT-YADVFNKLPIYFMTFHGQQSIKIVMDAVQHATYVHDIAH 342
Query: 414 LVIDPYNELDHQRPVSQTETEYVS-QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN 472
++ID + S+T + +++ + FA + CHV V HPR+ + E N
Sbjct: 343 VIIDNMQFMMGVSEDSKTNRFWKQDKIIEEFRNFATKYNCHVTLVIHPRKERD--DELTN 400
Query: 473 LYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 532
I GSA + DN ++I R +Q+ +N+ G +G + +++
Sbjct: 401 -SSIFGSAKASQEADNVLIIQDKRLTNIRGKKYLQI----TKNRYSGDLGIMIMEFDKTK 455
Query: 533 GEY 535
Y
Sbjct: 456 LSY 458
>gi|449277190|gb|EMC85466.1| Twinkle protein, mitochondrial, partial [Columba livia]
Length = 473
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 116/281 (41%), Gaps = 45/281 (16%)
Query: 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--RNGKLVNCKYRDFNKK---- 103
N+ +A F L++ TL+R V R +V FP++ R+ L K KK
Sbjct: 116 NKTKAMFGISLVTDATLKRFGVRYLRTAKSLV--FPWFSPRDATLKGLKLLRAEKKGDAI 173
Query: 104 FWQEK-----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSV 157
++E+ DT +GL I ++++++ E+D L++ +A + +++P GA + +
Sbjct: 174 AYEEETLPRFDTYHNLFGLPLIGRRDTELVLTGWELDALALHQATGVASLALPRGA-TCL 232
Query: 158 SKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+P YL+Q RI L D A+ AR++ RC VR
Sbjct: 233 PPALLP----------------YLEQFKRITLWLGEDLRSWEAAKLFARKLSIRRCSLVR 276
Query: 218 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGD 277
P + N+ L L +++ A + +FR +E+ +
Sbjct: 277 -PGDLQPRPLEALNQDL------NLTKILRAALPASHKSIVSFRQLREEV---FGELVNT 326
Query: 278 EFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWI 314
E W EL +L G ELTI TG SGK+ +I
Sbjct: 327 EQVAGVKWARFPELNKLLKGHRRGELTIFTGPTGSGKTTFI 367
>gi|429201615|ref|ZP_19193067.1| replicative DNA helicase [Streptomyces ipomoeae 91-03]
gi|428662807|gb|EKX62211.1| replicative DNA helicase [Streptomyces ipomoeae 91-03]
Length = 489
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 33/327 (10%)
Query: 212 RCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYY 271
R ++ + +DVD + + ++ A+ E + P+ + DEI+A
Sbjct: 170 RITQMGYAADDDVDEIVNRAQAEIF----AVTEQRTTEDYLPLGDIME--GALDEIEAIG 223
Query: 272 HRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF- 329
R SG+ G+ TG+ L++L N L PG++ I+ P GKS L + A K
Sbjct: 224 SR-SGEMTGVPTGFTDLDQLTNGLHPGQMIIIAARPAMGKS----TLALDFARAASIKHN 278
Query: 330 ---VLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIR 386
V+ S+E E A +LL + G MT E++ + + + +
Sbjct: 279 LPSVIFSLEMGRNEIAMRLLSAEARVALHHMRSG----TMTDEDWTRLARRMPDVSAAPL 334
Query: 387 CENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+DS P++ + AK L R+ ++ ++ID Y +L S++ + VS M +K
Sbjct: 335 YIDDS-PNLSMMEIRAKCRRLKQRNDLKLVIID-YLQLMQSGKRSESRQQEVSDMSRNLK 392
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-----NRDP 498
A+ V ++ R + P + D+ S D I++HR P
Sbjct: 393 LLAKELELPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESP 452
Query: 499 EAGPIDRVQVCVRKVRNKVVGTIGEAF 525
AG D + V K RN TI AF
Sbjct: 453 RAGEAD---IIVGKHRNGPTATITVAF 476
>gi|406039483|ref|ZP_11046838.1| replicative DNA helicase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 481
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 111/265 (41%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ Y + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTYGMQAGDLIIVAARPSMGKTTFAMNLVESVLFNSNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 YSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A + G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTEVRSRARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|117923574|ref|YP_864191.1| primary replicative DNA helicase [Magnetococcus marinus MC-1]
gi|117607330|gb|ABK42785.1| primary replicative DNA helicase [Magnetococcus marinus MC-1]
Length = 460
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 31/262 (11%)
Query: 280 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G++TG+ L++ L P +L I+ G P+ GK+ + N H + S+E
Sbjct: 198 GVATGFIDLDQQLAGCQPSDLIILAGRPSMGKTALAMNIAANAALHHREAVGVFSLEMSK 257
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW------LSNTFSLIR---CEN 389
+ A ++L S RM + GK L+NT +L+
Sbjct: 258 EQLAMRML--------------ASEARMDAQAMRIGKIATSDYQKLTNTATLLSEAPIYI 303
Query: 390 DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447
D P+I AKA L+ G++ +V+D Y +L + + +SQ+ +K A
Sbjct: 304 DDTPAISITALRAKARRLKRDKGLKLIVVD-YLQLMRGSSNTDNRVQEISQISQGLKAIA 362
Query: 448 QHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID-- 504
+ + V ++ R + + P L D+ S D + + R + ID
Sbjct: 363 KEMSVPVIALSQLSRSVEQRPDKRPILSDLRESGSIEQDADVVMFVFREEYYKREDIDLK 422
Query: 505 -RVQVCVRKVRNKVVGTIGEAF 525
+ +V + K RN VG + AF
Sbjct: 423 GKAEVIIAKQRNGPVGVVKLAF 444
>gi|294790340|ref|ZP_06755498.1| replicative DNA helicase [Scardovia inopinata F0304]
gi|294458237|gb|EFG26590.1| replicative DNA helicase [Scardovia inopinata F0304]
Length = 474
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 105/261 (40%), Gaps = 22/261 (8%)
Query: 280 GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G+ TG++ +++L L PG++ +V G P GKS + H G V+ S+E
Sbjct: 211 GVKTGFKDIDDLTQGLQPGQMIVVAGRPAMGKSTLGVDFARSAALHQGLTTVIFSLEMNS 270
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPSI 395
E A+++L P SA R E + L+N F + D P++
Sbjct: 271 NELAQRILSAETNIPL-------SALRKPDEITPERWGTLNNAFDKLHDAPLFIDDSPNM 323
Query: 396 KWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
+ AK L+ ++ +VID + + V + E VS+ +K A+ A
Sbjct: 324 SLMEIRAKCRRLKQTENLKLVVIDYLQLMSSGKKVESRQQE-VSEFSRALKLLAKELAVP 382
Query: 454 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQV 508
V ++ R + P L D+ S D ++HR N++ G D +
Sbjct: 383 VVALSQLNRGSEMRQDKIPQLADLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD---I 439
Query: 509 CVRKVRNKVVGTIGEAFLSYN 529
+ K RN T AFL N
Sbjct: 440 IMAKHRNGPTDTFHLAFLGAN 460
>gi|392409627|ref|YP_006446234.1| replicative DNA helicase [Desulfomonile tiedjei DSM 6799]
gi|390622763|gb|AFM23970.1| replicative DNA helicase [Desulfomonile tiedjei DSM 6799]
Length = 461
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 118/281 (41%), Gaps = 37/281 (13%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNIN 322
F+ I+ Y R + G+ +G++ L+ L P +L I+ G P+ GK+ + N+
Sbjct: 172 FETIERLYERKE-NITGVGSGFKDLDALTAGFQPSDLVIIAGRPSMGKTSFA----LNVG 226
Query: 323 EHA----GWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEF 371
HA G + S+E + A ++L K ++ F ++ G + V
Sbjct: 227 MHAAMELGVPTAVFSLEMSKEQIALRILCARAKVNLKTLRTGFLTSDDWGRLT-LAVGNI 285
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVS 429
+ ++ +T P+I + AKA L+ G+ GLVI Y +L S
Sbjct: 286 SEAPFYVDDT-----------PAINTLEIRAKARRLKKERGL-GLVIVDYLQLMRSAVRS 333
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ + +S + +K A+ + V ++ R++ + + P L D+ S D
Sbjct: 334 DSREKEISDISRSLKALAKEISVPVIALSQLNRKVEDRPNKRPQLADLRESGAIEQDADV 393
Query: 489 GIVIHR----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ I+R N+ PE ++ + K RN +GT+ F
Sbjct: 394 IVFIYRDEVYNKSPENPKKGEAEIIIGKQRNGPIGTVTAYF 434
>gi|300780224|ref|ZP_07090080.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
33030]
gi|300534334|gb|EFK55393.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC
33030]
Length = 490
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 265 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 323
DE+ A Y + G G+ TG+ L+ L N L G++ I+ P GKS + + +
Sbjct: 218 DEL-AAYEKDGGLAAGVPTGFLDLDRLTNGLHAGQMIIIAARPGVGKSTLALDFVRSCSI 276
Query: 324 HAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSA--ERMT--VEEFEQGKAW 377
H V+ S+E E +LL E IK + + E++T + E +Q +
Sbjct: 277 HNDLTSVIFSLEMSASEIVMRLLSAETEIKLSAMRSGQMEESDWEKLTKRLREIQQAPIF 336
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437
+ ++ +L E + A+ +HG+ +V+D + R V + E VS
Sbjct: 337 VDDSPNLTMME---------IRSKARRLKQQHGLDLVVLDYMQLMSSGRKVESRQQE-VS 386
Query: 438 QMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
+ +K A+ V ++ R + + P L D+ S D ++++R
Sbjct: 387 EFSRQLKLLAKELEVPVIAISQLNRGPESRTDKRPQLADLRESGSLEQDADIVMLLYRPD 446
Query: 495 --NRDPE-AGPIDRVQVCVRKVRNKVVGTIGEAF-LSYNR 530
+RD E AG D + + K R + TI A L Y+R
Sbjct: 447 SQDRDNERAGEAD---IIIAKHRGGPIDTIAVAHQLHYSR 483
>gi|328872591|gb|EGG20958.1| T7-like mitochondrial DNA helicase [Dictyostelium fasciculatum]
Length = 711
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 37/223 (16%)
Query: 95 CKYRDFNKKFWQE---KDTEKVFYGLDDIEGES-DIIIVEGEMDKLSMEEAGFLNCVSVP 150
CK R K Q K + F+G I ++ +III EGE D +++ +A +S+P
Sbjct: 326 CKLRSARSKVHQRIEPKGGKFGFFGWHTIPADAKEIIITEGEYDAMAVYQATKRPTISLP 385
Query: 151 DGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGR 210
+G +S+ VP L + I L D D PGQ A++ A
Sbjct: 386 NGC-ASLPPALVPQ----------------LDRFETIYLWMDDDVPGQEGAKKFAIHT-- 426
Query: 211 ERCWRVRWPKKNDVDHFKDANEVLMYLGPGA-LKEVVENAELYPIMGLFNFRDYFDEIDA 269
++ +D KDAN+ L+ GA L ++E++ P + D+ +++
Sbjct: 427 ---------RQGKIDGPKDANDALLM---GADLNAILESSTSIPHQHITTLADFTAQVEV 474
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKS 311
+ + + +T L+E + G LTI++G GK+
Sbjct: 475 EQNNNADSDGFKNTFLPKLDESLGLKKRGRLTIISGSSGIGKT 517
>gi|411007988|ref|ZP_11384317.1| replicative DNA helicase [Streptomyces globisporus C-1027]
Length = 453
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 113/279 (40%), Gaps = 34/279 (12%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNIN 322
FDEI+A G+ G+ TG+ L+ L + PG+L ++ G P GKS L +I
Sbjct: 181 FDEIEAAGKLKPGELTGVPTGFTDLDRLTLGLQPGQLILIAGRPAMGKS----TLGLDIA 236
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV------EEFEQGKA 376
A K L + + E +RK E H++ E + G R V E + KA
Sbjct: 237 RAASLKHKLFTAFFSL-EMSRK--ELHMRLLSAEGSVGLHHIRSGVLTDDSWERMARAKA 293
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNEL----DHQRPVSQT 431
+ L+ D P + + KA L+ G LV+ Y +L +RP ++
Sbjct: 294 RIDAGNLLL----DDSPELTALSIRTKARRLKQRGCLDLVVIDYLQLLQYGGGRRP--ES 347
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ VS + +K A+ V ++H R + P + D+ S D I+
Sbjct: 348 RQQEVSDISRQLKLMAKELEVPVIALSH-RGPEQRTDKKPQVSDLRESGSLEQDADVVIL 406
Query: 492 IHR-----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+HR P AG D + V K RN I AF
Sbjct: 407 LHREDQYEKESPRAGEADFI---VGKHRNGPTAIITAAF 442
>gi|420913919|ref|ZP_15377229.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
gi|392126018|gb|EIU51770.1| replicative DNA helicase [Mycobacterium abscessus 6G-0125-S]
Length = 456
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 111/269 (41%), Gaps = 24/269 (8%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 183 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 240
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 241 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 294
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 295 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 352
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 494
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 353 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 412
Query: 495 --NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN T+
Sbjct: 413 FDRDDPRGGEAD---LILAKHRNGPTRTV 438
>gi|424054927|ref|ZP_17792451.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
gi|407439676|gb|EKF46201.1| replicative DNA helicase [Acinetobacter nosocomialis Ab22222]
Length = 457
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 111/255 (43%), Gaps = 17/255 (6%)
Query: 278 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLIS-GIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 452
+ AK + ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVIAKYGKLGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 506
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 507 QVCVRKVRNKVVGTI 521
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein
[Caldicellulosiruptor owensensis OL]
gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor
owensensis OL]
Length = 607
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 122/279 (43%), Gaps = 36/279 (12%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN---KKFWQEKD 109
++YFA R IS + + + V + VV FP ++GK++ R+ N +K+ +
Sbjct: 129 KSYFASRGISEKFMEKYNVGFDVENNAVV--FPIVQDGKVICWTRRNLNNPDRKYDFPQG 186
Query: 110 TEKVFYGLDDI--EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
+ + LD + + ++++ I EG D L++EEA + P A +S + +
Sbjct: 187 YNAIPFNLDVLKDDKQTNVFITEGVFDALTIEEA-----IGQPAIALNSCTNQQ------ 235
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
+L Q + + D D G+ A++L ++ ++ + V N+ +
Sbjct: 236 ----NFLQELNRIKPQGKKFFILFDNDHDGKEQAKKLFDKM--KKVYDVALCNWNNNLPY 289
Query: 228 KDANEVLMYLGPGALKEVV--ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG-ISTG 284
KD NE + K ++ YP L + ++E ++F I TG
Sbjct: 290 KDVNEFWIADPANCTKFLLWQLKTAFYP-YALISIAPSYEEF------IKSEKFATIPTG 342
Query: 285 WRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNI 321
++ L+++ N ++ G L + P+ GK+ ++ LI N
Sbjct: 343 FKMLDDVLNGGLIAGNLYVFGAKPSVGKTTFLLQLIDNF 381
>gi|54027550|ref|YP_121792.1| replicative DNA helicase [Nocardia farcinica IFM 10152]
gi|54019058|dbj|BAD60428.1| putative replicative DNA helicase [Nocardia farcinica IFM 10152]
Length = 885
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 242 LKEVVE--NAELYPIMGLFNFRDYF----------DEIDAYYHRTSGDEFGISTGWRALN 289
+ EVV+ AE+Y + D+ DEID+ R G G+ TG+ L+
Sbjct: 153 IAEVVDRAQAEVYEVTERRTTEDFLPLEELLQPTMDEIDSIASR-GGISLGVPTGFSELD 211
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
EL N L PG++ IV P GKS + + + G V+ S+E E +LL
Sbjct: 212 ELTNGLHPGQMIIVAARPGVGKSTLGMDFMRSCSIKHGLASVIFSLEMSRTEIVMRLLSA 271
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL- 407
K + G RM+ +++ + +S +DS P++ + AKA L
Sbjct: 272 EAKIKLADMRSG----RMSDDDWTKLARRMSEISEAPLFVDDS-PNLTMMEIRAKARRLK 326
Query: 408 -RHGVRGLVID 417
RH ++ +V+D
Sbjct: 327 QRHDLKLVVVD 337
>gi|398814509|ref|ZP_10573190.1| replicative DNA helicase [Brevibacillus sp. BC25]
gi|398036778|gb|EJL29987.1| replicative DNA helicase [Brevibacillus sp. BC25]
Length = 461
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 31/260 (11%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWK-----FVLCSMENKVREHARKLLEKHIK 351
G+L I+ P+ GK+ A + G + + S+E + + ++L K
Sbjct: 197 GQLIILGARPSVGKT----AFALKMARTTGIQPDSDPVAIFSLEMRKGDLLNRMLSAEAK 252
Query: 352 KPFFEANYGGSAERMTVEEFEQGKAWLSNTF--SLIRCENDSLPSIKWVLDLAKAAVLRH 409
P + + +M+ E+ Q +SN F S I E+ ++ ++ ++A +H
Sbjct: 253 IPLLKIRH----NKMSEGEW-QVFTQVSNKFYRSNIYMEDKGRQALNEIVAESRALKRKH 307
Query: 410 GVRGLVIDPY-----NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
G G+++ Y N+ +R + + + + +K A+ C V +A R +
Sbjct: 308 GKVGMILIDYLGLIGNKGRGRRNRNVNRDQEIGEYTGTLKELAKELDCPVVLLAQLNRDI 367
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE------AGPIDRVQVCVRKVRNKV 517
+ + PNL + S + D +HR+ E PI +V++ + K R+
Sbjct: 368 DKGIVKRPNLSSLRESGNIEQDADVVAFLHRDDSEEYVNFATGEPISKVELIIAKNRDGS 427
Query: 518 VGTIGEAFLSYNRVTGEYMD 537
VGT+ L++ RV E++D
Sbjct: 428 VGTVN---LAFRRVFQEFID 444
>gi|423016486|ref|ZP_17007207.1| replicative DNA helicase [Achromobacter xylosoxidans AXX-A]
gi|338780428|gb|EGP44836.1| replicative DNA helicase [Achromobacter xylosoxidans AXX-A]
Length = 460
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 179 ERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS + GK
Sbjct: 235 EHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLIA 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 281 EDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGNG 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 341 SGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ + K RN +G++ F
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTF 441
>gi|328948107|ref|YP_004365444.1| replicative DNA helicase [Treponema succinifaciens DSM 2489]
gi|328448431|gb|AEB14147.1| replicative DNA helicase [Treponema succinifaciens DSM 2489]
Length = 442
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 115/263 (43%), Gaps = 29/263 (11%)
Query: 280 GISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335
GI +G LN+L ++ G E+ I+ P+ GK+ +++ NI G S+E
Sbjct: 183 GIPSG---LNDLDSMTSGFQNSEMIIIGARPSMGKTALALSMMQNIAIDRGIPCGFFSLE 239
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSI 395
+ A++LL + + P + G + +E+F++ + F+ D+ P++
Sbjct: 240 MSADQIAQRLLSQIARIPGTKLRNG----MLKIEDFKKLQDAAGECFNAPLYIVDT-PNM 294
Query: 396 KWVLDL---AKAAVLRHGVRGLVIDPYNELDHQRPVSQT--ETEYVSQMLTMVKRFAQHH 450
K +LDL A+ + V+ + ID + + P +Q + +S+ L + R +
Sbjct: 295 K-LLDLRAMARRMKVNQKVQIIFIDYIGLITSENPDAQLFEQQSAISKSLKSLARELEIP 353
Query: 451 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH----RNRDPEAG--PID 504
+ VA + GE PNL + GS D + IH N++ G P+
Sbjct: 354 IVVLCQVARAAE-----GEEPNLAQLRGSGSIEQDADMVMFIHGKRSDNKETNEGYNPVQ 408
Query: 505 RVQVCVRKVRNKVVGTIGEAFLS 527
++ V K RN +G + FLS
Sbjct: 409 ERKLIVAKQRNGPIGDVDVIFLS 431
>gi|402756334|ref|ZP_10858590.1| replicative DNA helicase [Acinetobacter sp. NCTC 7422]
Length = 481
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVCLAF 459
>gi|172059035|ref|YP_001815495.1| replicative DNA helicase [Exiguobacterium sibiricum 255-15]
gi|171991556|gb|ACB62478.1| replicative DNA helicase [Exiguobacterium sibiricum 255-15]
Length = 450
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 216 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVE------NAELYPIMGLFNFRDYFDEIDA 269
+R + D ++ NEV + L A ++++E +A PI + + ID
Sbjct: 118 IRTANEIVTDGYERQNEVDVLLNE-AERKILEVSQGKGSASFIPISDVLT--SAYATIDK 174
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
H+ SG+ GI TG+R L+++ +L IV P+ GK+ + + N+ A
Sbjct: 175 L-HKQSGETTGIPTGFRDLDKVTAGFQRNDLIIVAARPSVGKTAFALNISQNVATRADEN 233
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLS-NTFSL 384
+ S+E + ++L E N A+R+ + E GK L+ ++ S
Sbjct: 234 VAIFSLEMGAEQLVMRML-------CAEGNV--DAQRLRTGQLEDEDWGKLSLAMSSLSQ 284
Query: 385 IRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442
D P I+ AK L+ HG+ ++ID + S + VS++
Sbjct: 285 AGIYIDDTPGIRVNDIRAKCRRLKQEHGLGMIMIDYLQLIQGNGRSSDNRQQEVSEISRS 344
Query: 443 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 499
+K A+ V ++ R + + + P + DI S D ++R+ + E
Sbjct: 345 LKSLARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYNKE 404
Query: 500 AGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ +++ + K RN GT+ AF
Sbjct: 405 TEDANTIEIIIAKQRNGPTGTVKLAF 430
>gi|289548579|ref|YP_003473567.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
gi|289182196|gb|ADC89440.1| replicative DNA helicase [Thermocrinis albus DSM 14484]
Length = 464
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 117/301 (38%), Gaps = 29/301 (9%)
Query: 243 KEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE---FGISTGWRALNELYNVL-PGE 298
+ V E +E + F+ +D E+ +R ++ G+ TG+ L+ + P +
Sbjct: 141 QRVYEISEKHTTTQYFHIKDVVREVLEIINRRKREDRIITGLPTGFMELDLMTTGFHPSD 200
Query: 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358
L IV P GKS ++ ++ +I V+ S+E + +LL P
Sbjct: 201 LVIVAARPGMGKSSFMLSIALHIAVEERVPVVIYSLEMTKEQLVLRLLSMTSGVPLQNLR 260
Query: 359 YGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWV-LDLAKAAVLRHGVRGLV 415
G E E+ + ++ L + + D P++ V L + + + G V
Sbjct: 261 KGFVGE-------EEDRKLMAAALELAKADIIIDDTPNLSTVDLRIRSRKLKKERNVGAV 313
Query: 416 IDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPP 471
Y +L H+R Q E +S+ L K A+ V +A RQ+ + + P
Sbjct: 314 FVDYLQLLRPPHRRSSRQEEVAEISRNL---KALAKELELPVIALAQLSRQVEHRSDKRP 370
Query: 472 NLYDISGSAHFINKCDNGIVIHR------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
L D+ S D + IHR N PE I ++ V K R G + AF
Sbjct: 371 QLADLRESGQIEQDADLILFIHRPEYYKKNPSPEEQGI--AEIIVAKQRQGPTGIVKVAF 428
Query: 526 L 526
+
Sbjct: 429 I 429
>gi|333992944|ref|YP_004525558.1| replicative DNA helicase DnaB [Mycobacterium sp. JDM601]
gi|333488912|gb|AEF38304.1| replicative DNA helicase DnaB [Mycobacterium sp. JDM601]
Length = 458
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 20/275 (7%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA G G+ TG+ L+E+ N L PG++ ++ P GKS +D L C+
Sbjct: 186 MDEIDAIASH-GGIARGVPTGFIDLDEVTNGLHPGQMVVIAARPGMGKSTLALDFLRSCS 244
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I V+ S+E E +LL K + G RMT +++ + +S
Sbjct: 245 IKHQ--LPSVIFSLEMSKTEIVMRLLSAEAKIKLGDMRSG----RMTDDDWTRLARRMSE 298
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+DS P++ + AKA L+ +R +V+D + + V + E VS+
Sbjct: 299 ISEAPLYIDDS-PNLTMMEIRAKARRLKQKADLRMVVVDYLQLMTSGKKVESRQQE-VSE 356
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 494
+K A+ V ++ R + P L D+ S D I++HR
Sbjct: 357 FSRQMKLLAKELELPVVALSQLNRGPEQRTDKKPMLADLRESGSIEQDSDMVILLHRPDA 416
Query: 495 --NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DP G D + R K V + LS
Sbjct: 417 FERDDPRGGEADLILAKHRNGPTKTVTVAHQLHLS 451
>gi|425746224|ref|ZP_18864254.1| replicative DNA helicase [Acinetobacter baumannii WC-323]
gi|425486101|gb|EKU52473.1| replicative DNA helicase [Acinetobacter baumannii WC-323]
Length = 481
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 113/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + PG+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQPGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRVAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|359798554|ref|ZP_09301125.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
gi|359363376|gb|EHK65102.1| replicative DNA helicase [Achromobacter arsenitoxydans SY8]
Length = 460
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 38/281 (13%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALICNIN 322
+ ID YHR ++ D G+ TG+ L+++ + + G +L IV G P+ GK+ + NI
Sbjct: 179 ERIDELYHRESTSDVTGVPTGFTDLDKMTSGMQGGDLIIVAGRPSMGKTSF----SMNIG 234
Query: 323 EHA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-- 376
EH G + SME + A ++L GS + GK
Sbjct: 235 EHVAIEEGLPVAVFSMEMGAVQLAMRML--------------GSVGLLDQHRMRTGKLIA 280
Query: 377 --WLSNTFSLIRCEN-----DSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427
W T ++ ++ D P++ V A+ + G GL+I Y +L
Sbjct: 281 EDWPRVTHAVQLMQDAQVYIDESPALSPMEVRARARRLARQCGQLGLIIIDYLQLMSGNG 340
Query: 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486
+ VS++ +K A+ C + ++ R L + P + D+ S
Sbjct: 341 SGENRATEVSEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA 400
Query: 487 DNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ +P++ ++ + K RN +G++ F
Sbjct: 401 DVILFIYRDEVYNPDSPDKGTAEIIIGKQRNGPIGSVRLTF 441
>gi|420919151|ref|ZP_15382452.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
gi|392138374|gb|EIU64110.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-S]
Length = 431
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 21/254 (8%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 158 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 215
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 216 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 269
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 270 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 327
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 494
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 328 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 387
Query: 495 --NRDPEAGPIDRV 506
DP G D +
Sbjct: 388 FDRDDPRGGEADLI 401
>gi|189423107|ref|YP_001950284.1| DnaB domain-containing protein [Geobacter lovleyi SZ]
gi|189419366|gb|ACD93764.1| DnaB domain protein [Geobacter lovleyi SZ]
Length = 318
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 121/295 (41%), Gaps = 28/295 (9%)
Query: 253 PIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNE-LYNVLPGELTIVTGVPNSGKS 311
PI + F D ++ H +G G TG+ L+ L + PG LT++ P++GKS
Sbjct: 24 PIYAVHEFIDESLKMVQQSHEHAGAITGYPTGFLDLDHMLCGLQPGTLTVIASRPSNGKS 83
Query: 312 EWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371
+ N+ + S+E + +LL A G +E + +
Sbjct: 84 SLAMNIAMNVGLKHTIPTAIFSLELSKEQLGIRLLSAVAHVDICRARTGHLSES-DLCKL 142
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
+ K L S I ++ S SI +L A + H V+ ++ID Y +L S
Sbjct: 143 DDAKETLRK--SAIYVDDTSGISITELLAKAIRLKVDHNVQVIIID-YLQLMRDDARSAL 199
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE------PPNLYDISGSAHFINK 485
+ +S++ + +K A+ V ++ QLH+ VG P L D+ + +
Sbjct: 200 DPTEISRISSSLKVLARELGVAVILLS---QLHSSVGRRKAKKTRPKLSDLGNTGSLEDD 256
Query: 486 CDNGIVIHRN-------RDPEAGPI----DRVQVCVRKVRNKVVGTIGEAFLSYN 529
D ++I+R R + + D ++ V K +N G IG F++++
Sbjct: 257 ADVILLIYRESVYCKACRRRDGSCVHNHEDLAEIIVAKHKN---GPIGTVFVNFH 308
>gi|420924813|ref|ZP_15388106.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|420980326|ref|ZP_15443500.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
gi|392149140|gb|EIU74857.1| replicative DNA helicase [Mycobacterium abscessus 6G-1108]
gi|392177325|gb|EIV02980.1| replicative DNA helicase [Mycobacterium abscessus 6G-0728-R]
Length = 464
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 111/269 (41%), Gaps = 24/269 (8%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA + G G+ TG+ L+++ N L PG+ IV G P GKS +D L C+
Sbjct: 191 LDEIDAIA--SGGSSRGVPTGFADLDDVTNGLHPGQFVIVAGRPGLGKSTLALDFLRSCS 248
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I V+ S+E E +LL + + G +M+ ++ Q L
Sbjct: 249 IKHK--MASVIFSLEMSKSEIVMRLLSAEARIKLQDIRSG----KMSDNDWAQMARRLGE 302
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+DS P++ + AKA LR +R +V+D Y +L ++ + VS
Sbjct: 303 ISESPLYIDDS-PNLTMMEIRAKARRLRQKADLRMIVVD-YLQLMSSGKAYESRQQEVSD 360
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGE-PPNLYDISGSAHFINKCDNGIVIHR--- 494
+K A+ V ++ + G+ P L D+ S D I++HR
Sbjct: 361 FSRSLKLLAKELEVPVVALSQLNRGPEQRGDKKPQLSDLRESGSQEQDADMVILLHRPDA 420
Query: 495 --NRDPEAGPIDRVQVCVRKVRNKVVGTI 521
DP G D + + K RN T+
Sbjct: 421 FDRDDPRGGEAD---LILAKHRNGPTRTV 446
>gi|407478649|ref|YP_006792526.1| replicative DNA helicase [Exiguobacterium antarcticum B7]
gi|407062728|gb|AFS71918.1| Replicative DNA helicase [Exiguobacterium antarcticum B7]
Length = 450
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 135/326 (41%), Gaps = 29/326 (8%)
Query: 216 VRWPKKNDVDHFKDANEVLMYLGPGALKEVVE------NAELYPIMGLFNFRDYFDEIDA 269
+R + D ++ NEV + L A ++++E +A PI + + ID
Sbjct: 118 IRTANEIVTDGYERQNEVDVLLNE-AERKILEVSQGKGSASFIPISDVLT--SAYATIDK 174
Query: 270 YYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
H+ SG+ GI TG+R L+++ +L IV P+ GK+ + + N+ A
Sbjct: 175 L-HKQSGETTGIPTGFRDLDKVTAGFQRNDLIIVAARPSVGKTAFALNISQNVATRADEN 233
Query: 329 FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ---GKAWLS-NTFSL 384
+ S+E + ++L E N A+R+ + E GK L+ ++ S
Sbjct: 234 VAIFSLEMGAEQLVMRML-------CAEGNV--DAQRLRTGQLEDEDWGKLSLAMSSLSQ 284
Query: 385 IRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442
D P I+ AK L+ HG+ ++ID + S + VS++
Sbjct: 285 AGIYIDDTPGIRVNDIRAKCRRLKQEHGLGMIMIDYLQLIQGNGRSSDNRQQEVSEISRS 344
Query: 443 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 499
+K A+ V ++ R + + + P + DI S D ++R+ + E
Sbjct: 345 LKSLARELEVPVIALSQLSRGVESRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYNKE 404
Query: 500 AGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ +++ + K RN GT+ AF
Sbjct: 405 TEDANTIEIIIAKQRNGPTGTVKLAF 430
>gi|167564998|ref|ZP_02357914.1| DNA primase [Burkholderia oklahomensis EO147]
Length = 497
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 122/293 (41%), Gaps = 38/293 (12%)
Query: 56 FAERLISAETLRRNR--VMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQ-EKDTEK 112
+R I+ ET R+ V + R G V IA G V K R+ +K+F K
Sbjct: 19 LGKRGIAEETCRKYGYLVGEDRDGVPVQIATYCDSAGSPVAQKLRNADKEFVVVGKLKHA 78
Query: 113 VFYG--LDDIEGESDIIIVEGEMDKLSMEEAGFLN--CVSVPDGAPSSVSKKNVPSEEQD 168
+G L G+ +I+ EGE+D LS+ +A L VSVP+GA + +
Sbjct: 79 GLFGQHLWRTTGKK-VIVTEGEIDCLSVAQALSLKWPVVSVPNGAQGAA---------KS 128
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
Q W L+ I+L D D PG+ A + R + P + K
Sbjct: 129 LAAQIEW-----LRGYEEIVLWFDNDDPGREAVAACAAILPPGRVKFITTPHE-----LK 178
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL 288
DAN++L GP A+ + A+ Y G+ D E + G T + L
Sbjct: 179 DANDLLREHGPKAVVDATWEAKAYRPDGVIAGEDLTPE-----RLKAKAAPGWQTPYPLL 233
Query: 289 NELY-NVLPGELTIVTGVPNSGKS----EWIDALICNINEHAGWKFVLCSMEN 336
NE+ + P +L ++T GKS E++ A +C + G F+ S+E+
Sbjct: 234 NEMTRGIRPRQLWLITAGTGVGKSTDAREFMYAALCE-GKKVGALFLEESVED 285
>gi|442322510|ref|YP_007362531.1| replicative DNA helicase [Myxococcus stipitatus DSM 14675]
gi|441490152|gb|AGC46847.1| replicative DNA helicase [Myxococcus stipitatus DSM 14675]
Length = 454
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 137/347 (39%), Gaps = 29/347 (8%)
Query: 198 QALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGL 257
QAL LA VGRE + + +++ D E ++L L E +L P+ L
Sbjct: 115 QALRRRLAN-VGRE-IQDLASQETGELEVLLDEAERKVFL----LAEKKREGDLRPVSEL 168
Query: 258 FNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDA 316
D +D +G G+STG+ L N+L + GEL I+ P GK+ +
Sbjct: 169 MEH--TLDLLDKMKSAATGIT-GLSTGYIDLDNQLTGLHAGELIILAARPGVGKTSFAMN 225
Query: 317 LICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376
+ N + S+E + +LL + + GG E+F++
Sbjct: 226 MAVNAALKENKAVGIFSLEMPADQLLMRLLASTARVDMKKLR-GGRLSPHDEEKFQEMAG 284
Query: 377 WLSNTFSLIRCENDSLPSIKWVLDL-AKAAVLRHG--VRGLVIDPYNELDHQRPVSQTET 433
L N I P DL AKA ++ L+I Y +L HQ+ ++
Sbjct: 285 ALYNAPIYIDDSGGLSP-----FDLRAKARRVKQKDPRLSLIIIDYLQLMHQKGKVESRQ 339
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
V+++ +K+ A+ + ++ R++ G P L D+ S D + I
Sbjct: 340 LEVAEISRALKQLAKELEVPIIALSQLSRKVEERKGGKPMLSDLRESGSIEQDADVVMFI 399
Query: 493 HRNRDPEAGPIDR--------VQVCVRKVRNKVVGTIGEAFLS-YNR 530
HR E G + V++ + K RN +G I FL+ Y R
Sbjct: 400 HREEVEEGGEAPQNAQTTVIPVELIIAKQRNGPIGEIPLVFLAEYTR 446
>gi|423349510|ref|ZP_17327166.1| replicative DNA helicase [Scardovia wiggsiae F0424]
gi|393702626|gb|EJD64829.1| replicative DNA helicase [Scardovia wiggsiae F0424]
Length = 477
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 22/262 (8%)
Query: 279 FGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337
G+ TG+R +++L L PG++ +V G P GKS + G ++ S+E
Sbjct: 213 LGVKTGFRDIDDLTQGLQPGQMIVVAGRPAMGKSTLGVDFARSAALRQGLTTIIFSLEMN 272
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN---DSLPS 394
E A+++L P SA R E + L++TF + D P+
Sbjct: 273 SIELAQRILSAETNIPL-------SALRKPDEITPERWGALNSTFDKLHDAPLFIDDSPN 325
Query: 395 IKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
+ + AK L+ ++ +VID + + V + E VS+ +K A+
Sbjct: 326 MSLMEIRAKCRRLKQTEDLKLVVIDYLQLMSSGKKVESRQQE-VSEFSRALKLLAKELGV 384
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 507
V ++ R + P L D+ S D ++HR N++ G D
Sbjct: 385 PVVALSQLNRGSEMRQDKIPQLADLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 441
Query: 508 VCVRKVRNKVVGTIGEAFLSYN 529
+ + K RN GT AFL N
Sbjct: 442 IIMAKHRNGPTGTFQLAFLGAN 463
>gi|359143528|ref|ZP_09177866.1| replicative DNA helicase [Streptomyces sp. S4]
Length = 460
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 27/256 (10%)
Query: 280 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G++TG+ ++ L + +LPG++ IV G P+ GKS L +I H K + ++ +
Sbjct: 202 GLATGFTDVDSLTSGLLPGQMVIVAGRPSLGKS----TLALDIARHVSVKNTVPALFFSL 257
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLP 393
++L++K F A G S + +T + G W L+ I+ D
Sbjct: 258 EMGRQELMDK-----VFAAEAGISLQHITSGQMTDGD-WDRLARRMPAIQKAPLFIDDTE 311
Query: 394 SIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH--QRPVSQTE--TEYVSQMLTMVKRFA 447
S+ + AKA + RHG+ +V+D + H +RP S+ E TE + M K
Sbjct: 312 SLTIMEARAKARRIKQRHGLGLVVVDYVQLMRHGGRRPDSRQEEVTEISRNIKLMAKELQ 371
Query: 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDR 505
P Q + P L D+ S D ++IHR +PE+
Sbjct: 372 VPVIALCQLNRGPEQRTD---RKPQLSDLRESGALEQDADIVVLIHREDAYEPESARAGE 428
Query: 506 VQVCVRKVRNKVVGTI 521
+ K R TI
Sbjct: 429 TDLIFAKHRGGAKATI 444
>gi|356668238|gb|AET35346.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 84/208 (40%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P FKD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GTLSPGKLYIANLP-------FKDPNECLLAGQPDAIAKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|134096189|ref|YP_001101264.1| replicative DNA helicase (partial) [Herminiimonas arsenicoxydans]
gi|133740092|emb|CAL63143.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans]
Length = 302
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 97/245 (39%), Gaps = 29/245 (11%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
D+ E A ++ +G W N PGE+++ G+ GKS ++ + ++
Sbjct: 27 DFLAETIAAFYPPAGASLPPRPLWDKTNGKIAFRPGEVSLWAGINGHGKSMFMSQIEIDL 86
Query: 322 NEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
G K + S E VR+ R A + ++ ++ + AW +
Sbjct: 87 MTQ-GEKVLSLSFEMLPVRQMQRM------------ARQAYANDQPPIDFLNRFHAWTTG 133
Query: 381 TFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+ D SIKW V+ + + A + G+ VID + + ET+Y +Q
Sbjct: 134 KLWMY----DHNGSIKWEKVMAVMRYAQEKFGITQFVIDSLMK------CVKGETDYDAQ 183
Query: 439 --MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496
+ + FAQ H+ V H R+ + P +D G+ + DN ++ RN+
Sbjct: 184 KDFVNELCAFAQARKVHIHLVHHIRKGED-EDRIPGKFDAKGAGAITDMVDNVFIVWRNK 242
Query: 497 DPEAG 501
E G
Sbjct: 243 KAERG 247
>gi|167006318|ref|YP_001661541.1| probable replicative DNA helicase [Streptomyces sp. HK1]
gi|166162400|gb|ABY83521.1| probable replicative DNA helicase [Streptomyces sp. HK1]
Length = 460
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 27/256 (10%)
Query: 280 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G++TG+ ++ L + +LPG++ IV G P+ GKS L +I H K + ++ +
Sbjct: 202 GLATGFTDVDALTSGLLPGQMVIVAGRPSLGKS----TLALDIARHVSVKNAVPALFFSL 257
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIRCEN---DSLP 393
++L++K F A G S + +T + G W L+ I+ D
Sbjct: 258 EMGRQELMDK-----VFAAEAGISLQHITSGQMTDGD-WDRLARRMPAIQKAPLFIDDTE 311
Query: 394 SIKWVLDLAKAAVL--RHGVRGLVIDPYNELDH--QRPVSQTE--TEYVSQMLTMVKRFA 447
S+ + AKA + RHG+ +V+D + H +RP S+ E TE + M K
Sbjct: 312 SLTIMEARAKARRIKQRHGLGLVVVDYVQLMRHGGRRPDSRQEEVTEISRNIKLMAKELQ 371
Query: 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDR 505
P Q + P L D+ S D ++IHR +PE+
Sbjct: 372 VPVIALCQLNRGPEQRTD---RKPQLSDLRESGALEQDADIVVLIHREDAYEPESARAGE 428
Query: 506 VQVCVRKVRNKVVGTI 521
+ K R TI
Sbjct: 429 TDLIFAKHRGGAKATI 444
>gi|220934103|ref|YP_002513002.1| replicative DNA helicase [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995413|gb|ACL72015.1| replicative DNA helicase [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 465
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 25/284 (8%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG-ELTIVTGVPNSGKSEWIDALI 318
R+ + I+ Y R G+ TG+ +E+ + L G +L IV G P+ GK+ +
Sbjct: 179 LRNTVEHIEMLYERDDPIT-GLPTGYSEFDEMTSGLQGGDLVIVAGRPSMGKTSFA---- 233
Query: 319 CNINEHAGWK----FVLCSMENKVREHARKLLEK--HIKKPFFEANYGGSAERMTVEEFE 372
NI E+A K + SME + + +LL I + G E F
Sbjct: 234 MNIAEYAALKQQAPVAVFSMEMPGEQLSMRLLSSMGRINQQRLRT---GRLEDDDWPRFT 290
Query: 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQ 430
+ LS I D P++ A+A L H GL++ Y +L ++
Sbjct: 291 SAVSMLSEAQLYI----DDSPALSPTEVRARARRLMREHKKLGLIVIDYLQLMQVPGSNE 346
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
T +S++ +K A+ + V ++ R L + P + D+ S D
Sbjct: 347 NRTTEISEISRGLKALAKELSVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADLI 406
Query: 490 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 530
I+R+ +PE+ ++ + K RN +GT+ FL Y R
Sbjct: 407 CFIYRDEVYNPESPDKGTAEIIIAKQRNGPIGTVRLTFLGQYTR 450
>gi|220915218|ref|YP_002490522.1| replicative DNA helicase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953072|gb|ACL63456.1| replicative DNA helicase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 473
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 39/270 (14%)
Query: 280 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 334
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 388
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPADQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAASLWLDDNFVLTPVE 318
Query: 389 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 444
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 499
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 500 ----AGPIDRVQVCVRKVRNKVVGTIGEAF 525
AG VQ+ V K R TI F
Sbjct: 428 QGTAAGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|302879237|ref|YP_003847801.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
gi|302582026|gb|ADL56037.1| replicative DNA helicase [Gallionella capsiferriformans ES-2]
Length = 465
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 34/308 (11%)
Query: 241 ALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDE-FGISTGWRALNELYNVL-PGE 298
A+ ++++ P M L++ FD I R++G G+ TG L+ + L PG+
Sbjct: 147 AMAQLIDTGTDEPTM-LYD--GMFDAIQDIDDRSTGRRPSGLLTGVAELDAITGGLEPGQ 203
Query: 299 LTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFF 355
L IV P+ GK+ A+ N+ + G S+E RE ++L+ P
Sbjct: 204 LIIVAARPSVGKT----AIALNVVDSVVTQGKSVAFFSLEMTRREIIQRLIALRTGVPVS 259
Query: 356 EANYGGSAERMTVEEFE-----QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG 410
G R+ E+++ QGKA N L + S+ + +V A+ +HG
Sbjct: 260 AMRAG----RLEPEQWDLISASQGKA---NGQRLHLIDRSSI-GVAYVRAAARKIKRQHG 311
Query: 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGE 469
+ +V+D L R T+ + + +K A+ + +A R +
Sbjct: 312 LDLVVVD---YLGLMRGEGHNRTQEIGSLSRGLKGLAKELGVPIIALAQLNRATETRQDK 368
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAFLS 527
P L D+ S D ++HR P R V VRK RN G +GE L+
Sbjct: 369 RPMLSDLRDSGEIEQDADIVAMLHREEQHNPAPEWRGLADVMVRKNRN---GPLGEMLLT 425
Query: 528 YNRVTGEY 535
+ T ++
Sbjct: 426 LDGPTMKF 433
>gi|334127196|ref|ZP_08501125.1| DNA primase [Centipeda periodontii DSM 2778]
gi|333389972|gb|EGK61127.1| DNA primase [Centipeda periodontii DSM 2778]
Length = 593
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 113/302 (37%), Gaps = 77/302 (25%)
Query: 19 NNRSQSSLKKFSKMKTIREITED----SLELEPLGNELRAYFAERLISAETLRRNRV--- 71
+ R ++ L++ ++ + + D L + G +AY A R I+ ET+ R +
Sbjct: 103 DPREEARLRELDDLRKVNALARDFFHNCLTMTRYGAAGKAYLAGRGITEETIARYGIGFA 162
Query: 72 ----------MQKRHGHEVVIA--------------FPYWRN----------GKLVNCKY 97
QKR E ++ + +RN G++V
Sbjct: 163 PDAWSKLADAFQKRGISEDILVTAGLAVRRERGGGVYDRFRNRVIIPIADERGRIVGFGG 222
Query: 98 R---DFNKKFWQEKDT-----EKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGFLN 145
R D K+ +T ++ +GLD I E I+VEG MD ++ EAG N
Sbjct: 223 RALGDAQPKYLNTAETPVFNKRRLLFGLDRAHRSIASEGCAIVVEGYMDAIAAWEAGVTN 282
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQ-ALAEEL 204
V+ + +S + + L++A RI+ D D GQ A L
Sbjct: 283 VVATLGTSFTS------------------DHAGILLRRAPRIVFCYDSDTAGQEATLRAL 324
Query: 205 ARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF 264
A GR RV KD +E + G AL+ +VE A P+ L + R +
Sbjct: 325 AAVRGRAAEVRVLLLPDG-----KDPDEYVRTHGAEALRALVETAVPAPVFRLRHVRTHM 379
Query: 265 DE 266
+
Sbjct: 380 TD 381
>gi|121534200|ref|ZP_01666025.1| DNA primase [Thermosinus carboxydivorans Nor1]
gi|121307303|gb|EAX48220.1| DNA primase [Thermosinus carboxydivorans Nor1]
Length = 606
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 79/192 (41%), Gaps = 39/192 (20%)
Query: 68 RNRVM-QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDT-----EKVFYGLD--- 118
RNRVM R V+ F G++++ D + K+ DT + YGLD
Sbjct: 203 RNRVMFPIRDARGRVVGF----GGRVLD----DSSPKYLNSPDTLLFNKRHLLYGLDAAI 254
Query: 119 -DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNC 177
I+ +I+VEG MD ++ GF N V +S+ P + L C
Sbjct: 255 RSIKESGQVIVVEGYMDVITAHRFGFTNVV-------ASLGTAFTPEQA-----GLLERC 302
Query: 178 KMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 237
+ S+++ A D D GQ+ A A RER + V K + KD +E L
Sbjct: 303 SV-----SQVLFAYDSDAAGQS-ATFRALATVRERGFNV---KVVSIPEGKDPDEFLRRH 353
Query: 238 GPGALKEVVENA 249
GP A VV A
Sbjct: 354 GPEAFARVVAQA 365
>gi|282855816|ref|ZP_06265118.1| replicative DNA helicase [Pyramidobacter piscolens W5455]
gi|282586330|gb|EFB91596.1| replicative DNA helicase [Pyramidobacter piscolens W5455]
Length = 448
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 32/285 (11%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNIN 322
F++I+ ++R GI++G+ ++ L + L G L I+ P+ GK+ + N+
Sbjct: 170 FNKIEEAFNREDTGITGITSGFIGIDRLTSGLQRGALNIIAARPSMGKTALAMNIARNVA 229
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG-------K 375
A ++ S+E + A +LL G+ RM ++E G K
Sbjct: 230 VKAQLPVLVFSLEMGAEQLALRLL--------------GAEARMNLQELVNGSFARGDWK 275
Query: 376 AWLSNTFSLIRC----ENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431
A LI ++ S+ S + A+ +HG GL++ Y +L + +
Sbjct: 276 ALQDAASILIEAPLYIDDSSILSTIELKARARRFKAKHGELGLIVVDYLQLMNASRTMDS 335
Query: 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490
+ V+++ +K A+ V ++ R + + + P L D+ S D
Sbjct: 336 KQNEVAEISRGLKAIARELEVPVIALSQLSRAVESRNEKTPQLSDLRDSGAIEQDADLVA 395
Query: 491 VIHRN----RDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 530
+++R +DPE + + + K RN + FL Y R
Sbjct: 396 LLYRESYYAKDPEGRNDNSASLDIAKNRNGPTDKVKLVFLREYTR 440
>gi|372217767|ref|YP_005087448.1| primase/helicase, partial [Cyanophage 9515-10a]
gi|310005688|gb|ADP00076.1| primase/helicase [Cyanophage 9515-10a]
Length = 491
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 105/499 (21%), Positives = 194/499 (38%), Gaps = 85/499 (17%)
Query: 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKF-WQEKDTEKVFY 115
+R ++ E R+ R+ H V+ F Y +NG+ + K + K F W K+T+ +
Sbjct: 28 KRGLTEEVCRKFRI----HKDGDVLRFHYTNKNGQTIAAKIKTKGKDFYWDGKNTDNQLF 83
Query: 116 GLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC-----VSVPDGAPSSVSKKNVPSEEQDT 169
G + + S + + EGE+D S G+ +SVP+GA + KK+
Sbjct: 84 GQNLFPDTGSRLTLYEGELDAAS----GYAAMPTWPHMSVPNGAAGA--KKD-------- 129
Query: 170 KYQYLWNCKMYLKQASRIILATDGDPPG--QALAEELARRVGRERCWRVRWPKKNDVDHF 227
L + ++L D D PG A R G+ + R ++ +
Sbjct: 130 ----LQKVIELTQGYDEVVLFFDNDSPGIAAAEECAALLRPGQAKIAR--------MEKY 177
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRA 287
KDA++ L A+++ + +A+ Y G+ + + D + T ++
Sbjct: 178 KDASDALQQGDMEAIRKAIWDAKTYRPDGIVDAKSLLDIV-----TTPEPPCAHEYPFKG 232
Query: 288 LN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL 346
LN +L+ + G LT +T SGK+ + + ++ + G + + +E R A L+
Sbjct: 233 LNKKLHGIRYGTLTAITAGTGSGKTSFCRHIAAHLLQE-GERVGVVELEASNRNTALGLM 291
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN------DSLPSIKWVLD 400
+ KP + V + + K SNT +N D S +
Sbjct: 292 SAAVGKPL----------HIGVHDETELKTSFSNTI-----DNWNLYLFDGFGSFDPDVI 336
Query: 401 LAKAAVLRHGVRGLVIDPYNELDH----QRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
++ L G+ ++ LDH + E + +T ++ + ++
Sbjct: 337 YSRIEYLASGLECRIV----FLDHLSILLSGLEGDERRTIDITMTRLRSLVERTGIALFL 392
Query: 457 VAHPRQLHN-----WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 511
V+H R+ N G +L + GS D+ VI RD + G VR
Sbjct: 393 VSHLRRSSNDRTSHEEGGRVSLSSLRGSHSIAQISDS--VIALERDQQGGTTGDA-TTVR 449
Query: 512 KVRNKVVGTIGEAF-LSYN 529
++N+ G G A +SY+
Sbjct: 450 VLKNRYSGETGVACQISYD 468
>gi|415722787|ref|ZP_11469180.1| replicative DNA helicase [Gardnerella vaginalis 00703C2mash]
gi|388064259|gb|EIK86816.1| replicative DNA helicase [Gardnerella vaginalis 00703C2mash]
Length = 487
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G+AE +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTAEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|317496119|ref|ZP_07954479.1| replicative DNA helicase [Gemella morbillorum M424]
gi|316913694|gb|EFV35180.1| replicative DNA helicase [Gemella morbillorum M424]
Length = 453
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 120/301 (39%), Gaps = 40/301 (13%)
Query: 259 NFRDYFDEI-DAYYHRTSGD--EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 315
N RD DE+ R SG+ I TG+ +L+++ + G+L I+ P+ GK+ +
Sbjct: 156 NMRDVTDEVFKEILARMSGEGKNIAIPTGFSSLDQVIGLGKGDLVILAARPSMGKTAFAL 215
Query: 316 ALICNI------NEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGS 362
+ N+ +E L S+E + +++ + IKK GS
Sbjct: 216 NIALNVAGKNHRSEEEKRTVALFSLEMGADQLVSRMICSEGMLDSEKIKK--------GS 267
Query: 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422
+ + + E +L+ I E+ + + V K HG+ ++ID Y +L
Sbjct: 268 LDNDDLMKLETAVHFLNQKNIFI--EDSAFIKVNEVKAKCKLLKSEHGLDLVIID-YLQL 324
Query: 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAH 481
+ + VS++ +K+ A+ C V ++ R + + + P + D+ S
Sbjct: 325 LQGSKRTDNRQQEVSEISRSLKQMARELECPVIALSQLSRSVESRHDKRPMMSDLRESGS 384
Query: 482 FINKCDNGIVIHR-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YN 529
D ++R N E + V+V V K RN GT AF+ YN
Sbjct: 385 IEQDADIVSFLYRGDYYRSEDADENEVQEPSDVSTVEVIVAKNRNGQTGTAELAFMKRYN 444
Query: 530 R 530
+
Sbjct: 445 K 445
>gi|410457447|ref|ZP_11311256.1| replicative DNA helicase [Bacillus bataviensis LMG 21833]
gi|409925145|gb|EKN62371.1| replicative DNA helicase [Bacillus bataviensis LMG 21833]
Length = 451
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 90/430 (20%), Positives = 166/430 (38%), Gaps = 48/430 (11%)
Query: 140 EAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK---QASRIILATD---- 192
E L + + A + S+ +P + +Q ++N ++L QA ++ T+
Sbjct: 17 EQAVLGAIFLEPSALTLASEILIPEDFYRASHQKIFNVMLHLNDQGQAVDLVTVTEELAA 76
Query: 193 -----------------GDPPGQALAEELARRVGRERCWR--VRWPKKNDVDHFKDANEV 233
G P A E AR V + R +R D + +EV
Sbjct: 77 AKLIEDIGGVSYLSDLAGSVPTAANIEYYARIVEEKSLLRRLIRTATTIASDGYSREDEV 136
Query: 234 LMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALN 289
L A K ++E A+ N +D +D I+ ++R G+ G+ TG+ L+
Sbjct: 137 EALLSE-AEKSILEVAQRKNAGAFHNIKDVLVRTYDNIEEMHNRV-GEITGLETGFVELD 194
Query: 290 ELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLL-- 346
+ +L IV P+ GK+ + + N+ + G + S+E + +LL
Sbjct: 195 RMTAGFQRNDLIIVGARPSVGKTAFALNVAQNVAKKTGENIAIFSLEMGAEQLVMRLLCA 254
Query: 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAV 406
E +I GS + LSNT I D P ++ +K
Sbjct: 255 EGNIDAQRLRT---GSLTEDDWGKLTMAMGSLSNTGIYI----DDTPGMRVGEIRSKCRR 307
Query: 407 LR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463
L+ HG+ ++ID + + + VS++ +K+ A+ V ++ R +
Sbjct: 308 LKQEHGLGMILIDYLQLILGSGRSGENRQQEVSEISRSLKQLARELQVPVIALSQLSRGV 367
Query: 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTI 521
+ P + DI S D ++R+ D E+ + +++ + K RN GT+
Sbjct: 368 EQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKESESKNIIEIIIAKQRNGPTGTV 427
Query: 522 GEAFLS-YNR 530
AF+ YN+
Sbjct: 428 SLAFVKEYNK 437
>gi|357039072|ref|ZP_09100867.1| replicative DNA helicase [Desulfotomaculum gibsoniae DSM 7213]
gi|355358536|gb|EHG06302.1| replicative DNA helicase [Desulfotomaculum gibsoniae DSM 7213]
Length = 445
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 23/276 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 320
D F ++ Y + G+ G+ TG+ L+ L L PG+L IV G P+ GK+ + + N
Sbjct: 166 DTFKHLEHLY-KHKGEINGVPTGFTDLDRLCQGLQPGDLVIVAGRPSMGKTSFGMCIAYN 224
Query: 321 INEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQ 373
E + SME + +++L + I+ F G ++T + E
Sbjct: 225 AAEKNNKPVAVFSMEMSKEQLVQRMLCAEAMVDQHKIRTGFIRDEDWG---KLTQKAREI 281
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
+ I ++ + +++ + A+ + G+ GL++ Y +L ++
Sbjct: 282 ARLP-------IFIDDSGVLTVRQLRAKARRLHMEKGL-GLIVIDYLQLMQGSGRTENRQ 333
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+ ++ + +K A+ V +A R + + P + D+ S D + I
Sbjct: 334 QEIANISRSLKALAKELGVPVLALAQLSRSVEQRQDKKPIMSDLRESGSLEQDADVVMFI 393
Query: 493 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+R+ +P+ I + V K RN G + AFL
Sbjct: 394 YRDEYYNPDTEKIGIADIIVAKQRNGPTGVVELAFL 429
>gi|355710875|gb|AES03829.1| progressive external ophthalmoplegia 1 [Mustela putorius furo]
Length = 316
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GELT+ TG SGK+ +I ++ G + S E AR +L +
Sbjct: 41 GELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEISNVRLARVMLTQF------- 92
Query: 357 ANYGGSAERMTVEEFEQGKAWLS--NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGL 414
+ R+ E+ ++ W L SI+ V+D + AV + + +
Sbjct: 93 -----AVGRLE-EQLDRYDEWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHV 146
Query: 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLY 474
VID + +S ++ ++FA ++CHV V HPR+ + +
Sbjct: 147 VIDNLQFMMGHEQLSTDRIAAQDYIVGAFRKFATDNSCHVTLVIHPRKEDD--DKELQTA 204
Query: 475 DISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
I GSA + DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 205 SIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 256
>gi|86156509|ref|YP_463294.1| primary replicative DNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773020|gb|ABC79857.1| primary replicative DNA helicase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 473
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 39/270 (14%)
Query: 280 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 334
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 388
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPSDQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAANLWLDDNFVLTPVE 318
Query: 389 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 444
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 499
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 500 ----AGPIDRVQVCVRKVRNKVVGTIGEAF 525
AG VQ+ V K R TI F
Sbjct: 428 QGTAAGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|182417634|ref|ZP_02948953.1| replicative DNA helicase [Clostridium butyricum 5521]
gi|237667822|ref|ZP_04527806.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378358|gb|EDT75889.1| replicative DNA helicase [Clostridium butyricum 5521]
gi|237656170|gb|EEP53726.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 434
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 108/260 (41%), Gaps = 15/260 (5%)
Query: 273 RTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
++SG+ G+ +G + ++ L GEL ++ G P+ GK+ + LI + ++ G+K L
Sbjct: 171 KSSGEIPGMKSGLVSFDKNIGGLNKGELNVIAGRPSMGKTLFALNLIDGLGKN-GYKAFL 229
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE-ND 390
C +E + L + + +G ++ + F+ + C
Sbjct: 230 CELEMTAESLGMRRLSSNSTVEVEKMKFGMLSDDEILSLFKTCEDMSKRDNLFTDCSPGQ 289
Query: 391 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH- 449
SL +IK AKA HG+ +VID ++ P T + ++ +K A+
Sbjct: 290 SLLNIKAK---AKAIKQTHGLDIIVIDHLTLMNI--PEKSTRDLAIGEITKGLKFMAKEL 344
Query: 450 HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDR 505
C + R + + + P L D+ S + D ++R NRD E I
Sbjct: 345 DVCVIILCQLSRAVEQRMDKRPMLSDLRESGNIEQDADMVAFMYRDEYYNRDSEDRGI-- 402
Query: 506 VQVCVRKVRNKVVGTIGEAF 525
++ + K RN GT+ A+
Sbjct: 403 LECIIGKQRNGRTGTLKFAY 422
>gi|197120506|ref|YP_002132457.1| replicative DNA helicase [Anaeromyxobacter sp. K]
gi|196170355|gb|ACG71328.1| replicative DNA helicase [Anaeromyxobacter sp. K]
Length = 473
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 39/270 (14%)
Query: 280 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSM 334
G+ TG + L+ + PG LT++ P+ GK+ A NI HA K S+
Sbjct: 203 GVPTGIQTLDRNTLGLQPGTLTVLAARPSVGKT----AFALNIATHAATKAQRKVAFFSL 258
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSA----ERMTVEEFEQGKA--WLSNTFSLIRCE 388
E + A ++L K + + + G + +++ + G A WL + F L E
Sbjct: 259 EMPADQLALRMLASEGKLDWRKLSQGQLSRHDWDKLATQADRIGAASLWLDDNFVLTPVE 318
Query: 389 NDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP--VSQTETEYVSQMLTMVK 444
S K L+ +G LV+ Y +L H +Q+ + ++ + +K
Sbjct: 319 LRS-----------KCRKLKRENGGLDLVMIDYLQLMHAPSDRSNQSREQEIATISRSLK 367
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPE 499
A+ C + ++ R + GEPP L D+ S D + +HR N+D +
Sbjct: 368 SLAKELECPIVALSQLNRSVEKRKGEPPMLSDLRESGAIEQDADIVMFLHRAEEDNKDVQ 427
Query: 500 AGPID----RVQVCVRKVRNKVVGTIGEAF 525
G VQ+ V K R TI F
Sbjct: 428 QGTASGDTLPVQLIVAKQRQGPTCTIDLVF 457
>gi|403068939|ref|ZP_10910271.1| replicative DNA helicase [Oceanobacillus sp. Ndiop]
Length = 457
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 117/281 (41%), Gaps = 23/281 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICN 320
D +D I+ H+ SGD G+ TG+ L+ + + P +L I+ P+ GK+ + + N
Sbjct: 168 DVYDNIEQL-HQQSGDVTGVPTGFHDLDRITSGFQPNDLIIIAARPSVGKTAFALNVAQN 226
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
+ + S+E + +++L E N A+R+ + Q W
Sbjct: 227 VAVKTEQNVAIFSLEMGAEQLVQRML-------CAEGNI--DAQRLRNGQL-QADDWGKL 276
Query: 381 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTET 433
T ++ N D P ++ +K L+ HG+ ++ID + +
Sbjct: 277 TMAMGSLSNAGIYIDDSPGVRVSEIRSKCRRLKQEHGLGMILIDYLQLIQGSGSSKENRQ 336
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+ VS++ +K A+ + ++ R + + + P + DI S D +
Sbjct: 337 QEVSEISRALKALARELKVPLIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVGFL 396
Query: 493 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
+R+ D E + +++ + K RN GT+ AF+ YN+
Sbjct: 397 YRDDYYDKETEKQNIIEIIIAKQRNGPTGTVELAFVKEYNK 437
>gi|428776990|ref|YP_007168777.1| replicative DNA helicase [Halothece sp. PCC 7418]
gi|428691269|gb|AFZ44563.1| replicative DNA helicase [Halothece sp. PCC 7418]
Length = 447
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 54/268 (20%), Positives = 119/268 (44%), Gaps = 15/268 (5%)
Query: 264 FDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNI 321
+D+I+ Y++ D+ G+ + + L+ + + L P +L I+ G P+ GK+ + + NI
Sbjct: 173 YDQIEGLYYQ---DQLPGLKSSFYDLDSMTSGLQPSDLIILAGRPSMGKTAFGLNMARNI 229
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
L S+E + +++LL K E+N S R++ +++++ + +
Sbjct: 230 AGQYKLPVALFSLEMSKEQLSQRLLASEAK---IESNRLRSG-RLSQQDYQKLSSAIGTL 285
Query: 382 FSL-IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440
+ I ++ + ++ + A+ HG GLV+ Y +L + +S++
Sbjct: 286 SDVPIFIDDTATMTVMEMRSQARRLQAEHGQLGLVLLDYLQL--MEGGGDNRVQELSRIT 343
Query: 441 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--D 497
+K A+ V ++ R + + P L D+ S D ++++R+ +
Sbjct: 344 RSLKTLARELKAPVIALSQLSRGVEQRTNKRPMLSDLRESGSIEQDADLVLMLYRDAYYN 403
Query: 498 PEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
P+ D ++ + K RN GT+ F
Sbjct: 404 PDTPDRDLAELIITKHRNGPTGTVKLIF 431
>gi|380741729|tpe|CCE70363.1| TPA: recombinase related [Pyrococcus abyssi GE5]
Length = 242
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 99/256 (38%), Gaps = 48/256 (18%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ YY R ISTG + L+EL ++PG + ++TG P SGK+ + +
Sbjct: 3 MQKYYER-------ISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLE-GAR 54
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G K S+ +K E + +L F + Y + K L + +
Sbjct: 55 KGEKVAYVSLIHKPEEVVKDMLR------FDPSIY---------VYVNKWKLMLYDLGPV 99
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQ------------ 430
+ E+ +P+ + VL + V G+ LVIDP +D Q PV +
Sbjct: 100 LWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLE 159
Query: 431 ---TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH-----F 482
+++M+ M K +H + H + +Y + G+ H
Sbjct: 160 DLGVTAYLIAEMIEMDKYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKL 219
Query: 483 INKCDNGIVIHRNRDP 498
+ D G+V++ N+ P
Sbjct: 220 LKFTDKGLVVY-NKSP 234
>gi|14521160|ref|NP_126635.1| recombinase related [Pyrococcus abyssi GE5]
gi|5458378|emb|CAB49866.1| recA family AAA ATPase [Pyrococcus abyssi GE5]
Length = 240
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 48/256 (18%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELY--NVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ YY R ISTG + L+EL ++PG + ++TG P SGK+ + +
Sbjct: 1 MQKYYER-------ISTGVKGLDELIEGGLIPGRVYLITGPPGSGKTTFGMHFLLE-GAR 52
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G K S+ +K E + +L F + Y + V ++ K L + +
Sbjct: 53 KGEKVAYVSLIHKPEEVVKDMLR------FDPSIY------VYVNKW---KLMLYDLGPV 97
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQ------------ 430
+ E+ +P+ + VL + V G+ LVIDP +D Q PV +
Sbjct: 98 LWRESTRVPTWRSVLSRIREIVEDEGISRLVIDPLTAIDFPLQNPVEKRVELAKFIRGLE 157
Query: 431 ---TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAH-----F 482
+++M+ M K +H + H + +Y + G+ H
Sbjct: 158 DLGVTAYLIAEMIEMDKYSEEHFLVSGIIILHYFMHQGRMIRAIQIYKMRGTRHDSNLKL 217
Query: 483 INKCDNGIVIHRNRDP 498
+ D G+V++ N+ P
Sbjct: 218 LKFTDKGLVVY-NKSP 232
>gi|415704666|ref|ZP_11459937.1| replicative DNA helicase [Gardnerella vaginalis 75712]
gi|388051388|gb|EIK74412.1| replicative DNA helicase [Gardnerella vaginalis 75712]
Length = 491
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E GI TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGIPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|254381030|ref|ZP_04996395.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194339940|gb|EDX20906.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 460
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 12/262 (4%)
Query: 278 EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337
E TG L++ + PG + +V G P GKS I + N H+G ++ S+E
Sbjct: 192 EAAAVTGLTDLDQALRMRPGNVVVVAGRPAMGKSA-ITLGVALANAHSGRTTIVHSLEMG 250
Query: 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK- 396
E ++L + + GG A +T +++ + L + S + D P +
Sbjct: 251 RSEVTNRVLSNRARVSLHQLMEGGPA--VTDDDWRRIAPRLPD-LSALPLWMDYTPRVTP 307
Query: 397 -WVLDLAKAAVLRHGVRGLVIDPYNELDH--QRPVSQTETEYVSQMLTMVKRFAQHHACH 453
V KA + + G LV+ Y +L + QR Q+ E VS++ +K A+
Sbjct: 308 GLVRTRIKALIRQTGQVPLVVVDYVQLMYTDQRTTRQSAYERVSEVSRELKIIAEETGAV 367
Query: 454 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCV 510
+ A R + G+ P + D+ S I++HR DP++ + +
Sbjct: 368 IICCAQLNRGPEHRDGKKPQVSDLRDSGQLEQDASGIILLHREDAYDPDSPRAGESDLIL 427
Query: 511 RKVRNKVVGTIGEAF-LSYNRV 531
K RN +I A Y+R+
Sbjct: 428 AKNRNGPTCSITVAHQFHYSRL 449
>gi|258515115|ref|YP_003191337.1| TOPRIM domain-containing protein [Desulfotomaculum acetoxidans DSM
771]
gi|257778820|gb|ACV62714.1| TOPRIM domain protein [Desulfotomaculum acetoxidans DSM 771]
Length = 316
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 97/213 (45%), Gaps = 41/213 (19%)
Query: 37 EITEDSLELEPLGNELRAYFA--------ERLISAETLRRNRVMQKRHGHEVVIAFPYW- 87
++T+ + + L N++ +A +R I + + RV + H V FP++
Sbjct: 108 DLTQTQVSTDLLNNDILKRYAYRHPYLEKQRGIEEKWQQGFRVGYCKKSHAV--TFPWFD 165
Query: 88 RNGKLVNCKYRD-FNKKFWQEKDTEKV---FYGLDDI--EGESDIIIVEGEMDKLSMEEA 141
G LVN K+R +K+FW + V YGL+ + ++ + IVE E+D +++ +A
Sbjct: 166 YRGDLVNIKFRSVIDKRFWYYSGGQPVKNHIYGLNFVIKTRKNRVYIVESEIDAITLWQA 225
Query: 142 GFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201
G A ++ N+ ++++ Q +I+ATD D GQ +A
Sbjct: 226 GL---------AAVALGGANLTRQQRNLLLQ---------SPVEELIIATDNDLAGQRIA 267
Query: 202 EELARRV-GRERCWRVRWPKKNDVDHFKDANEV 233
+ + R++ G ++ P++ KD NE+
Sbjct: 268 DSIVRQLSGYLDIKKINLPEQ-----VKDVNEL 295
>gi|171059507|ref|YP_001791856.1| replicative DNA helicase [Leptothrix cholodnii SP-6]
gi|170776952|gb|ACB35091.1| replicative DNA helicase [Leptothrix cholodnii SP-6]
Length = 473
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 114/280 (40%), Gaps = 31/280 (11%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
D + +G+ G+ TG+ L+ + + L PG+L ++ P+ GK+ A NI
Sbjct: 188 IDRVQELAENGAGEVTGVPTGFADLDRMTSGLQPGDLIVLAARPSMGKT----AFALNIG 243
Query: 323 EHAGWK----FVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEF 371
EH K V+ SME + A +++ ++H++ + G V++
Sbjct: 244 EHVAVKEQLPVVVFSMEMGASQLALRMVGSLGRIDQQHLRTGSLRDDEWGRLSE-AVDQL 302
Query: 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL--DHQRPVS 429
++ T +L E + ++ + G GL+I Y +L
Sbjct: 303 RNVSLFIDETPALTPAE---------LRARSRRQARQCGKLGLIIVDYLQLMSGSNSGGG 353
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488
+ T +S++ +K A+ C V ++ R + + P + D+ S D
Sbjct: 354 ENRTAEISEISRGLKALAKELQCPVIALSQLNRSVETRTDKRPMMSDLRESGAIEQDADV 413
Query: 489 GIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ I+R+ + E+ ++ + K RN VGT+ AFL
Sbjct: 414 IMFIYRDEYYNKESKEPGVAEIIIGKQRNGPVGTVRLAFL 453
>gi|291614204|ref|YP_003524361.1| replicative DNA helicase [Sideroxydans lithotrophicus ES-1]
gi|291584316|gb|ADE11974.1| replicative DNA helicase [Sideroxydans lithotrophicus ES-1]
Length = 461
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 119/294 (40%), Gaps = 49/294 (16%)
Query: 265 DEIDAYYHR-TSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
+ I+ Y R + D G +TG+ L+ + + L PG+L IV G P+ GK+ A NI
Sbjct: 183 ERIETLYGRDNASDVTGTATGFADLDRMTSGLQPGDLVIVAGRPSMGKT----AFSINIA 238
Query: 323 EHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA--- 376
E+ G + SME + A +++ GS R+ GK
Sbjct: 239 ENVALDGKPVAIFSMEMGGAQLAMRMI--------------GSVGRLNQHTLRTGKLEDE 284
Query: 377 -WLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNEL--DHQR 426
W T +L + D P + + ++ L +HG GLV+ Y +L
Sbjct: 285 DWSRMTHALGLLNDAPIFIDETPGLNALELRSRTRRLHRQHGGLGLVVIDYIQLMSSPAG 344
Query: 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFI 483
S+ +S++ +K A+ HV +A R L + P + D+ S
Sbjct: 345 KASENRATEISEISRSLKSLAKE--LHVPVIALSQLNRSLEQRPNKRPVMSDLRESGAIE 402
Query: 484 NKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535
D + I+R+ +P++ ++ V K RN G IG L++ GEY
Sbjct: 403 QDADLILFIYRDEVYNPDSQDKGTAEIIVGKQRN---GPIGAVRLTFR---GEY 450
>gi|299534267|ref|ZP_07047616.1| hypothetical protein CTS44_25671 [Comamonas testosteroni S44]
gi|298717725|gb|EFI58733.1| hypothetical protein CTS44_25671 [Comamonas testosteroni S44]
Length = 323
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 44/278 (15%)
Query: 285 WRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 344
W+ + L PGE+T+ G GKS + ++ G K + S E K +
Sbjct: 52 WKKTHGLLQFRPGEVTVWAGANGQGKS-MVTGMVALSLAAQGEKICIASFEMK----PER 106
Query: 345 LLEKHIKKPFFEANYGGSAERMT-------VEEFEQGKAWLSNTFSLIRCENDSLPSIKW 397
LE+ + + F N A R + ++ +EQ + W L D ++ W
Sbjct: 107 TLER-MGRQFAGMNPEAVAARGSEKSIKNLLDVYEQFRDWTDQRLWLY----DQQGTVAW 161
Query: 398 --VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACH 453
V +A+ A GV + ID + Q E +Y Q + + A+ + H
Sbjct: 162 TNVCAVARYAAKVLGVTQIFIDSLMK------CVQGEDDYNGQKAFVDELTAIARDYGVH 215
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-------------DPEA 500
+ V H ++ N PN YD+ G+ + DN +++ RN+ + E
Sbjct: 216 IHLVHHIKKPAN-EEHAPNKYDLKGTGAVSDLVDNVVLVWRNKVKERKREENKLTEEDEV 274
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538
D V +C ++ + G IG L +++ + +++ I
Sbjct: 275 REPDTVLICDKQRNGEWEGKIG---LWFDKPSQQFLGI 309
>gi|384109815|ref|ZP_10010677.1| replicative DNA helicase [Treponema sp. JC4]
gi|383868647|gb|EID84284.1| replicative DNA helicase [Treponema sp. JC4]
Length = 441
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 15/276 (5%)
Query: 267 IDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALI--CNINE 323
I+A Y R+ GI TG+ L+ + EL I+ P+ GK+ +++ ++ +
Sbjct: 173 IEARY-RSKNQFTGIPTGFAKLDTYTSGFQNSELIIIGARPSIGKTALALSMMQYISVEK 231
Query: 324 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA-WLSNTF 382
H F S+E ++L + + + G +R V + + W
Sbjct: 232 HIPCGF--FSLEMPYEAIGMRILAQEARVNMSKIR-SGMLKREDVTKIQNAAGRWFEAPL 288
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442
++ N L ++ +A+ V +H V+ + ID Y L S+ + V+++
Sbjct: 289 YVVDTPNMRLIDLRA---MARRMVTKHQVKIIFID-YIGLITTEDSSKATYDQVAEISKS 344
Query: 443 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 502
+K A+ + VA + + GE P L I GS D + +HR+R E
Sbjct: 345 LKALARE--LQIPIVALSQVARDAEGEEPKLNQIRGSGAVEQDADVVMFLHRDRLKEETA 402
Query: 503 IDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTGEYMD 537
++ + K RN G I F+ SY++ D
Sbjct: 403 AQDAKIILAKQRNGATGDIKIMFIPSYSKFENAQQD 438
>gi|167583630|ref|YP_001671820.1| primase/helicase [Enterobacteria phage phiEco32]
gi|164375468|gb|ABY52876.1| primase/helicase [Enterobacteria phage phiEco32]
Length = 596
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 117/541 (21%), Positives = 207/541 (38%), Gaps = 84/541 (15%)
Query: 35 IREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVN 94
+RE+ +D LEL P G EL + +S R + Q FP R+G +V
Sbjct: 69 LREVLDDCLEL-PQG-ELTRRLIPKAVSERFECRIGLSQTDGQTPDSYFFPRERDGNIVG 126
Query: 95 CKYRDFN-KKFW-----QEKD-------------TEKVFYGLDDIEGESDIIIVEGEMDK 135
+ + + KKF+ +E D +K+F D + S ++ +
Sbjct: 127 YEVKLLDSKKFYYVGSVKEADLFGMAQAQRGDVYNKKLFIFEDPLSCMSGFHVLTAFTNA 186
Query: 136 LSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195
+++ A CVS+P GA S S V S +D ++ ++L D D
Sbjct: 187 TNIKPA----CVSLPFGAGSISS---VLSRNRD-----------FVNGFEEVVLCMDNDD 228
Query: 196 PGQ-ALAE--ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
G+ AL + L V R + +P KDAN++L+ G G EL+
Sbjct: 229 AGEIALTKGRSLFPHVKFARIPKGTFPYNGVEKEIKDANDMLLS-GRGQ--------ELF 279
Query: 253 PIMGLFNFRD-------YFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGELTIVTG 304
I+ R+ FD +D + E+GI W+ LNE+ + + GE+ + G
Sbjct: 280 NILKYSAKRESPAGAVTIFDCLDDALKKA---EWGIPYPWKTLNEMTFGIRWGEVVAIGG 336
Query: 305 VPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 364
SGK+ L+ ++ G+ +E KV + + K PF + E
Sbjct: 337 GVGSGKTLIAHELVAHLCLEHGFNGGGFFLEEKVGMSVKNIAGKSASIPFHRPDVEYDEE 396
Query: 365 RMTVEEFEQG-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423
+ E K +L + F E+ WV++ ++ + LV
Sbjct: 397 DLRNEALRYADKFFLYDNFGQNEWEDIKQCIRFWVVENQCKFIILDNITALV-------S 449
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPN-------LYDI 476
H P S+ TE +S++ + + + + ++H L+ G P+
Sbjct: 450 HLTP-SEINTE-ISKIASELAGMCKELDFTAFVLSH---LNAPAGGAPHEEGGQVREVQF 504
Query: 477 SGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536
+GS + C +I RD +A + + +R ++ + G G + Y TG +
Sbjct: 505 TGSRSLMRWCQ--CIIGFERDKQADGLAKNLSVIRLLKERNYGQTGVCYTKYISETGRLV 562
Query: 537 D 537
+
Sbjct: 563 E 563
>gi|365827077|ref|ZP_09368951.1| replicative DNA helicase [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365265438|gb|EHM95201.1| replicative DNA helicase [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 474
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 266 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 324
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRENGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRMLAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 385 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441
I N ++P I+ +KA ++ H + +VID + R V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGRRVESRQQE-VSEFSR 367
Query: 442 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 496
+K A+ V VA R G P + D+ S D I++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIILLHRPEYYNN 427
Query: 497 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ G D + V K RN TI AF
Sbjct: 428 EDRPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|22028196|gb|AAH34909.1| Peo1 protein [Mus musculus]
Length = 287
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + V +VID + +S ++ ++FA ++CH
Sbjct: 96 SIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCH 155
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 156 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 209
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 210 -KNRFDGDVGVFPLEFNK 226
>gi|255319497|ref|ZP_05360711.1| replicative DNA helicase [Acinetobacter radioresistens SK82]
gi|262378479|ref|ZP_06071636.1| replicative DNA helicase [Acinetobacter radioresistens SH164]
gi|421464160|ref|ZP_15912853.1| replicative DNA helicase [Acinetobacter radioresistens WC-A-157]
gi|421856876|ref|ZP_16289234.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
gi|255303437|gb|EET82640.1| replicative DNA helicase [Acinetobacter radioresistens SK82]
gi|262299764|gb|EEY87676.1| replicative DNA helicase [Acinetobacter radioresistens SH164]
gi|400206534|gb|EJO37511.1| replicative DNA helicase [Acinetobacter radioresistens WC-A-157]
gi|403187623|dbj|GAB75435.1| replicative DNA helicase [Acinetobacter radioresistens DSM 6976 =
NBRC 102413]
Length = 481
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 108/265 (40%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G G+STG+ L N+ Y + G+L IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KLEGSLTGLSTGFIELDNKTYGMQSGDLIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 FSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A G G ++ Y +L + +S++ +
Sbjct: 315 LYIDDSSALPPTELRARARRIAKQHGGKLGCIMVDYLQLMKVPGMGDNRVGEISEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|163846528|ref|YP_001634572.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
gi|222524314|ref|YP_002568785.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
gi|163667817|gb|ABY34183.1| replicative DNA helicase [Chloroflexus aurantiacus J-10-fl]
gi|222448193|gb|ACM52459.1| replicative DNA helicase [Chloroflexus sp. Y-400-fl]
Length = 451
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 249 AELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PG 297
AEL+ + N +D+ F +I++ R G+ G+ TG+ L+EL L P
Sbjct: 148 AELFAVSQRRNNQDFVHIGRVVNTLFSQIESMQER-RGEVIGVPTGYHDLDELTGGLQPS 206
Query: 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKH 349
+L I+ P+ GK+ +L N+ HA + S+E + +++L H
Sbjct: 207 DLIILAARPSVGKTSLALSLAYNVAFHANGTVAIFSLEMSREQLVQRMLAMH 258
>gi|385802274|ref|YP_005838677.1| replicative DNA helicase [Gardnerella vaginalis HMP9231]
gi|417555955|ref|ZP_12207017.1| replicative DNA helicase [Gardnerella vaginalis 315-A]
gi|333392929|gb|AEF30847.1| replicative DNA helicase [Gardnerella vaginalis HMP9231]
gi|333603278|gb|EGL14696.1| replicative DNA helicase [Gardnerella vaginalis 315-A]
Length = 486
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 199 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 258
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 259 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 316
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 317 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 375
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 376 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 430
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 431 -IIMAKHRNGPTETFNLAFL 449
>gi|34497957|ref|NP_902172.1| replicative DNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34103812|gb|AAQ60173.1| replicative DNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 468
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 123/314 (39%), Gaps = 63/314 (20%)
Query: 239 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-P 296
PG LKEVVE ID Y R + DE G+ TG+ L+ + L P
Sbjct: 174 PGLLKEVVER------------------IDMLYSRDNPDEVTGVPTGFIDLDAKTSGLQP 215
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWK----FVLCSMENKVREHARKLLEKHIKK 352
G+L IV G P+ GK+ A NI EH + + SME + ++L
Sbjct: 216 GDLIIVAGRPSMGKT----AFSMNIAEHVAVETHLPVAVFSMEMGGAQLVMRML------ 265
Query: 353 PFFEANYGGSAERMTVEEFEQGKA----WLSNTFSLIRCEN-----DSLPSIK--WVLDL 401
GS R+ GK W T+++ + + D P++ +
Sbjct: 266 --------GSVGRLDQHVLRTGKLGDDDWQKLTYAIGKLSDAPMYIDETPALTALELRAR 317
Query: 402 AKAAVLRHGVR-GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
A+ +HG + GL++ Y +L T + ++ +K A+ V ++
Sbjct: 318 ARRLARQHGGKLGLIVIDYLQLMSGSGRGDNRTAELGEISRGLKGLAKELQVPVIALS-- 375
Query: 461 RQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVR 514
QL V + PN + D+ S D I ++R+ +P++ + + K R
Sbjct: 376 -QLSRAVEQRPNKRPMMSDLRESGAIEQDADLIIFMYRDEYYNPDSPDKGLAEAIIGKHR 434
Query: 515 NKVVGTIGEAFLSY 528
N G + AF+ +
Sbjct: 435 NGPTGAVRLAFIGH 448
>gi|308235263|ref|ZP_07666000.1| replicative DNA helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311113980|ref|YP_003985201.1| replicative DNA helicase DnaB [Gardnerella vaginalis ATCC 14019]
gi|310945474|gb|ADP38178.1| replicative DNA helicase DnaB [Gardnerella vaginalis ATCC 14019]
Length = 491
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|415714000|ref|ZP_11465380.1| replicative DNA helicase [Gardnerella vaginalis 1400E]
gi|388059358|gb|EIK82098.1| replicative DNA helicase [Gardnerella vaginalis 1400E]
Length = 516
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 18/259 (6%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 229 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 288
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 289 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 346
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 347 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 405
Query: 455 WFVAHPR---QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 507
++ ++ N + P L D+ S D ++HR N++ G D
Sbjct: 406 VALSQLNRGPEMRN--DKKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 460
Query: 508 VCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 461 IIMAKHRNGPTETFNLAFL 479
>gi|415711229|ref|ZP_11464042.1| replicative DNA helicase [Gardnerella vaginalis 55152]
gi|388058540|gb|EIK81330.1| replicative DNA helicase [Gardnerella vaginalis 55152]
Length = 516
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 18/259 (6%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 229 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 288
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 289 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 346
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 347 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 405
Query: 455 WFVAHPR---QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQ 507
++ ++ N + P L D+ S D ++HR N++ G D
Sbjct: 406 VALSQLNRGPEMRN--DKKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD--- 460
Query: 508 VCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 461 IIMAKHRNGPTETFNLAFL 479
>gi|415703722|ref|ZP_11459473.1| replicative DNA helicase [Gardnerella vaginalis 284V]
gi|415706191|ref|ZP_11461265.1| replicative DNA helicase [Gardnerella vaginalis 0288E]
gi|388051028|gb|EIK74053.1| replicative DNA helicase [Gardnerella vaginalis 284V]
gi|388055083|gb|EIK78004.1| replicative DNA helicase [Gardnerella vaginalis 0288E]
Length = 491
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G++E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTSEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKKVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|401406728|ref|XP_003882813.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool]
Length = 2215
Score = 43.5 bits (101), Expect = 0.31, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 114 FYGLDDIEGESDIIIV-EGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
+G + E+D ++V EGE D +S+ + L VSVP GA S+ + +P
Sbjct: 399 LFGAGTVPAEADTVVVTEGEFDAMSVFQQTGLPAVSVPMGA-HSLPVQVLP--------- 448
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVR 217
+ ++ +IIL D D G+ AE A ++G RC+ VR
Sbjct: 449 -------FFERFKKIILWMDEDAAGREGAELFASKLGIGRCYLVR 486
>gi|421687046|ref|ZP_16126778.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
gi|404566317|gb|EKA71472.1| replicative DNA helicase [Acinetobacter baumannii IS-143]
Length = 457
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 278 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLIS-GIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 452
+ AK ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVQAKYGKIGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 506
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 507 QVCVRKVRNKVVGTI 521
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|326633056|ref|YP_004306667.1| predicted DNA primase-helicase [Salmonella phage Vi06]
gi|301170529|emb|CBV65214.1| predicted DNA primase-helicase [Salmonella phage Vi06]
Length = 366
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 115/301 (38%), Gaps = 31/301 (10%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 79 LTARGISKETCQKAGYWLAKVDGVVYQVADYRDQNGTIVSQKIRDKDKNFKTTGSHKSDA 138
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 139 LFGKHLWSGGKKIVVTEGEVDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 192
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 193 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 239
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 240 HLNGHDREVMAQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 294
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E ++
Sbjct: 295 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTVMGKKVGLAMLEESVEETVEDIIGL 354
Query: 349 H 349
H
Sbjct: 355 H 355
>gi|160897376|ref|YP_001562958.1| hypothetical protein Daci_1933 [Delftia acidovorans SPH-1]
gi|160362960|gb|ABX34573.1| phage-related hypothetical protein [Delftia acidovorans SPH-1]
Length = 323
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 285 WRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK----VRE 340
WR +L PGE+T+ G +GKS + ++ G + + S E K +
Sbjct: 52 WRKTAQLVQFRPGEVTLWGGANGNGKSLVTGQVALSLCGQ-GERVAIASFEMKPIKTLER 110
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
R+ + P + N G +R+ ++ +EQ + W N L + + V
Sbjct: 111 MGRQWSGTNPAHPAYAGNDDG--QRILIDTYEQFRDWTDNKLWLY--DQQGTVTTAQVCA 166
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML-----TMVKRFAQHHACHVW 455
+ + A + V V+D + Q E +Y Q L T + R H +
Sbjct: 167 VVRYAAVELKVTHFVVDSLMK------CVQGEDDYNGQKLFVDELTAIARDHGIHIHLIH 220
Query: 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
+ P + PN YD+ GS ++ DN I + RN+ E
Sbjct: 221 HIKKPASEDH----KPNKYDMKGSGAITDQVDNVIAVWRNKPKE 260
>gi|170073393|ref|XP_001870367.1| pom1 [Culex quinquefasciatus]
gi|167869989|gb|EDS33372.1| pom1 [Culex quinquefasciatus]
Length = 375
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 101/257 (39%), Gaps = 24/257 (9%)
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
WR L +L G ELT++TG GK+ ++ ++ G + S E +
Sbjct: 115 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLALQ-GVSTLWGSFEIRNTR 173
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
A LL + +P + S +EFEQ L F + IK V+D
Sbjct: 174 LATTLLRQMAGRPL---DVNLSEFDHWADEFEQ----LPVYFMTFHGQQ----PIKVVMD 222
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 458
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 223 AIEHAQYVHDIQHVIIDNLQFMMGVSEESKHLDRYWKQDAIIASFRTFATRKNCHVTLVI 282
Query: 459 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
HPR+ + + I G A + DN ++I R +Q+ +N+
Sbjct: 283 HPRKERD--TDDLTTSSIFGGAKASQEADNVLIIQDKRLTSVRGKKYLQIA----KNRYS 336
Query: 519 GTIGEAFLSYNRVTGEY 535
G +G L +++++ Y
Sbjct: 337 GDLGIMPLDFDKLSLSY 353
>gi|312879781|ref|ZP_07739581.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
gi|310783072|gb|EFQ23470.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260]
Length = 450
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 140/343 (40%), Gaps = 37/343 (10%)
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMY--LGPGALKEVVENAELYPIMGLFNFRDYF 264
+VG E R+ + ++ D + D E L++ G G+ V L ++G+ F
Sbjct: 120 QVGAE-IARLGYAEERDREETLDEAERLVFDIAGSGSTSTV---RPLRQVLGV-----TF 170
Query: 265 DEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE 323
EI+ +H+ G+ TG+ + L L PG L I+ P+ GK+ AL NI +
Sbjct: 171 REIEERFHQ-GALVTGVPTGYDDFDRLTGGLQPGSLNILAARPSMGKT----ALALNIAQ 225
Query: 324 HA----GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS 379
+A G ++ S+E + A++LL K + G E E LS
Sbjct: 226 NAAVRGGLPVLVFSLEMGAEQLAQRLLGSEAKVNIHDLRTGRFHES-AWENLAAAAGTLS 284
Query: 380 NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD--HQRPVS-QTETEYV 436
I ++ SL S + + + + G GLV+ Y +L QR S Q E +
Sbjct: 285 EAPLFI--DDSSLLSTLELRARCRRFLAQQGSLGLVVVDYLQLMSLSQRVDSKQQEVAEI 342
Query: 437 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR-- 494
S+ L V R + + ++ +L N + P L D+ S D ++++R
Sbjct: 343 SKSLKGVAREFRVPVLALSQLSRAVELRN--DKRPQLSDLRDSGAIEQDADLVVLLYRPG 400
Query: 495 ---NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTG 533
EA P + + V K RN G + FL Y R G
Sbjct: 401 YYEREQGEANP--QAEAIVAKHRNGPTGKVDLIFLREYARFEG 441
>gi|160902436|ref|YP_001568017.1| replicative DNA helicase [Petrotoga mobilis SJ95]
gi|160360080|gb|ABX31694.1| replicative DNA helicase [Petrotoga mobilis SJ95]
Length = 456
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 134/331 (40%), Gaps = 45/331 (13%)
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAE-----LYPIMGLFNFRDYFDEIDAYYHRTSGDE 278
V + DA EVL Y A K + AE Y ++ D F++I+ +R E
Sbjct: 127 VRNIGDAQEVLEY----AEKRIFSIAEARATRTYDLLSNV-MHDVFEQIEELKNRAQKGE 181
Query: 279 ----FGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333
G+STG++ L+ + + EL I+ P+ GK+ + + N+ A + S
Sbjct: 182 GNLVTGVSTGFKPLDRMTSGFHRSELIIIAARPSMGKTSFAANIATNMALQANIAVAIFS 241
Query: 334 MENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE---QGKAWLSNTFSLIRCEND 390
+E + A ++L K + G +++ EE+E Q LS + R D
Sbjct: 242 LEMSKEQLANRILCSEAKVDLHKVRTG----QISDEEWEKLVQKAGELSKS----RLIFD 293
Query: 391 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRP----VSQTETEYVSQMLTMVK 444
P + L AKA ++ +G+ + ID Y +L R Q E +S+ L ++
Sbjct: 294 DEPDLSPRLLRAKARRMKREYGIEVIFID-YLQLMTSRSKGYESRQQEITEISRSLKLLA 352
Query: 445 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-------D 497
R + + V R + + P L D+ S D + ++R+ +
Sbjct: 353 R--ELNITVVALSQLSRAVEQREDKRPRLSDLRESGAIEQDADLVMFLYRDSYYKRKKDE 410
Query: 498 PEAGPID---RVQVCVRKVRNKVVGTIGEAF 525
P ++ ++ V K RN VGTI F
Sbjct: 411 PGKDTLNDEHEAELIVGKQRNGPVGTIKLTF 441
>gi|407932095|ref|YP_006847738.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
gi|407900676|gb|AFU37507.1| replicative DNA helicase [Acinetobacter baumannii TYTH-1]
Length = 359
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 280 GISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G++TG+ AL+ + + G+L ++ P+ GK+ + L NI + ++ S+E K
Sbjct: 83 GVNTGFVALDHRIGEINNGDLVVIAARPSMGKTAFALNLATNIATNLRKPVLIESIEMK- 141
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFE-QGKAWLSNTFSLIRCEN------DS 391
R + K I G + ++ E G+ W T + +N D
Sbjct: 142 ----RDAITKRIISSV------GDLKLSKIKNAELDGEDWTCFTEAAKVIQNSPLMIMDG 191
Query: 392 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNE--LDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+I + A+ G G + Y + + P S +E + ++ + +KR A
Sbjct: 192 AVTISDIRKHARKVRSEEGSLGAIFVDYLQKIITPHLPASASENDRLTYISDSLKRVAME 251
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
C V+ ++ RQL N + P + D+ GS D + ++R N + P
Sbjct: 252 FNCPVFALSQLSRQLENRSDKRPIMSDLRGSGAIEQDADVILFLYRDEYYNGEKSKTP-G 310
Query: 505 RVQVCVRKVRNKVVGTIGEAF----LSYNRVTGEYMD 537
++V KVR+ G++G+ F L Y+R + + D
Sbjct: 311 LLEVNAAKVRD---GSVGKTFLCSELDYSRFSNVHSD 344
>gi|326633057|ref|YP_004306668.1| predicted DNA helicase [Salmonella phage Vi06]
gi|301170530|emb|CBV65215.1| predicted DNA helicase [Salmonella phage Vi06]
Length = 305
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 103/268 (38%), Gaps = 30/268 (11%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGTIVSQKIRDKDKNFKTTGSHKSDALFGKHLWSGGKKIVVTEGEVDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
+ + P KDANE + + V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREVMAQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT GKS ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKH 349
G K L +E V E ++ H
Sbjct: 267 GTVMGKKVGLAMLEESVEETVEDIIGLH 294
>gi|225850833|ref|YP_002731067.1| replicative DNA helicase [Persephonella marina EX-H1]
gi|225646403|gb|ACO04589.1| replicative DNA helicase [Persephonella marina EX-H1]
Length = 483
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 138/356 (38%), Gaps = 45/356 (12%)
Query: 195 PPGQALAEELARRVGRERCWR----VRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAE 250
PP + E +AR++ + R V +KD NE L A E+ + E
Sbjct: 96 PPN--VVESVARQIKEKSIARGLIQVSQNIIQKAKDYKDVNE----LVEEAESEIFKLNE 149
Query: 251 LYPIMGLFNFRDYFDEIDAYYHRTSGDEF---GISTGWRALNELYNVL-PGELTIVTGVP 306
+ + +D E + S E GI +G+ L+ L PG+L I+ P
Sbjct: 150 ERAVTHYYEIKDVVKETLNIINELSKKETVITGIPSGFYDLDRLTTGFHPGDLVIIAARP 209
Query: 307 NSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK----HIKKPFFEANYGGS 362
GK+ +++ N++ S+E + +LL H+KK + +
Sbjct: 210 AMGKTSLALSILHNVSVVEKIPSAFFSLEMSKEQIVMRLLSLETRIHLKK--IRSGFLNQ 267
Query: 363 AERMTVEE----FEQGKAWLSNTFSLIRCENDSLPSIKWVLDL-AKAAVLRH--GVRGLV 415
E + + + ++ +T SL +LDL AKA L+ ++ +V
Sbjct: 268 DEILKITDLASILSDAPIYIDDTASL------------SILDLRAKARRLKREKDIQLIV 315
Query: 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLY 474
ID Y +L ++ + V+++ +K A+ V +A RQ + P L
Sbjct: 316 ID-YLQLMRSHRRTENRQQEVAEISRGLKALAKELNIPVISLAQLSRQAEMRADKRPQLA 374
Query: 475 DISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
D+ S D + IHR ++P ++ + K RN GT+ AF+
Sbjct: 375 DLRESGSIEQDADLVMFIHRPEYYKKNPTPEEEGLAEIIIAKQRNGPTGTVNLAFI 430
>gi|417546817|ref|ZP_12197903.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|421670515|ref|ZP_16110512.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
gi|400384705|gb|EJP43383.1| replicative DNA helicase [Acinetobacter baumannii OIFC032]
gi|410384982|gb|EKP37479.1| replicative DNA helicase [Acinetobacter baumannii OIFC099]
Length = 457
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 17/255 (6%)
Query: 278 EFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E GI TG+ AL N+L + G+L I+ P+ GK+ + + ++ + + S+E
Sbjct: 181 EGGIKTGFTALDNKLGEISKGDLVIIGARPSMGKTTFAQNIAADMMINQSLPVLFISIEM 240
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
K R+ A++L+ I G + + + + A L + + ++++ ++
Sbjct: 241 KGRQIAQRLIS-GIGGVELRKVLTGHIDPNSDDTQKVNNAALVLEKAPLMIDDNNRATVA 299
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT----ETEYVSQMLTMVKRFAQHHAC 452
+ AK ++G G + Y + P+++ + + ++ +KR A C
Sbjct: 300 TIRRSAKKVQAKYGKIGAIFVDY--IQKVTPLTKNNFGRSDKDIGEISNELKRMAGDFDC 357
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDP-EAGPIDRV 506
V +A R L N + P D+ S D + I+R N+D EAG
Sbjct: 358 PVIALAQLNRNLENRPNKRPVNADLKESGDLEQDADIIMFIYRDEVYNKDSKEAGT---A 414
Query: 507 QVCVRKVRNKVVGTI 521
++ + K RN +GT+
Sbjct: 415 EIIIGKARNGSIGTV 429
>gi|381210661|ref|ZP_09917732.1| replicative DNA helicase [Lentibacillus sp. Grbi]
Length = 457
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 62/284 (21%), Positives = 120/284 (42%), Gaps = 29/284 (10%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 320
D +D I+ +H GD GI TG+R L+++ + +L I+ P+ GK+ + + N
Sbjct: 168 DVYDNIEQLHHH-DGDVTGIPTGYRDLDQITSGFQRNDLIIIAARPSVGKTAFALNIAQN 226
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
++ + + S+E + ++L E N A+R+ E E W
Sbjct: 227 VSINTDENVAIFSLEMGADQLVSRML-------CAEGNI--DAQRLRTGELEPDD-WSKL 276
Query: 381 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNEL----DHQRPVS 429
T ++ N D P ++ +K L+ HG+ G+++ Y +L + R
Sbjct: 277 TMAMGSLSNAGIYIDDSPGVRVSEIRSKCRRLKQEHGL-GMILIDYLQLIQGSGNSRENR 335
Query: 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 489
Q E +S+ L + R + + + R + + P + D+ S D
Sbjct: 336 QQEVSEISRALKALAR--ELNVPLIALSQLSRGVEARQDKRPMMSDLRESGSIEQDADIV 393
Query: 490 IVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNR 530
++R+ D E+ + +++ + K RN VG + AF+ YN+
Sbjct: 394 GFLYRDDYYDQESEKQNIIEIIISKQRNGPVGNVELAFVKEYNK 437
>gi|356668244|gb|AET35349.1| DNA primase/helicase protein [uncultured virus]
gi|356668246|gb|AET35350.1| DNA primase/helicase protein [uncultured virus]
Length = 234
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 93/236 (39%), Gaps = 44/236 (18%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTAVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHI-KKPFFEANYGGSAERMTVEEFEQ 373
N G K + +E VR A+ L+ K+P N +T EEF +
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLMSVEAGKRPHINRNA------LTPEEFRE 212
>gi|74193538|dbj|BAE20696.1| unnamed protein product [Mus musculus]
Length = 308
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + V +VID + +S ++ ++FA ++CH
Sbjct: 117 SIRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCH 176
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 177 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 230
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 231 -KNRFDGDVGVFPLEFNK 247
>gi|326923873|ref|XP_003208157.1| PREDICTED: twinkle protein, mitochondrial-like, partial [Meleagris
gallopavo]
Length = 441
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 45/278 (16%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW--RNGKLVNCKYR---------DFN 101
+A F ++ TL+R V R +V FP++ R+ L K +
Sbjct: 87 KAAFGITPLANSTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQQGEAVSYT 144
Query: 102 KKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
++ + D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 145 EETFPRFDAYRNLFGLPLIGRRDTEVVLTGRELDALALHQATGVPCLALPRGA-TILPPA 203
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q R+ L D A+ AR++ +RC V+ P
Sbjct: 204 LLP----------------YLEQFRRVTLWLGDDLRSWEAAKLFARKLNPKRCSLVQ-PG 246
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N L L +++ A + +FR DE+ + + E
Sbjct: 247 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLRDEV---FGELANSEQV 297
Query: 281 ISTGWRALNELYNVLP----GELTIVTGVPNSGKSEWI 314
W EL +L GELT+ TG SGK+ +I
Sbjct: 298 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFI 335
>gi|421487320|ref|ZP_15934795.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
gi|400194425|gb|EJO27486.1| hypothetical protein QWC_31583, partial [Achromobacter piechaudii
HLE]
Length = 211
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN--KKFWQEKD 109
+R + R ++ ET+ ++ ++ + FPY R G+ +N KYR + K QE
Sbjct: 120 VRDWLMSRGLTEETIAAFQIAEQERNGKAYAVFPYLREGEFINAKYRCVSDKKDMRQEGG 179
Query: 110 TEKVFYGLDDIEGES-DIIIVEGEMDKLS 137
E +G I+ ++ + I EGE+D ++
Sbjct: 180 AEPCLFGWQLIDPKTRTVAIFEGEIDAMT 208
>gi|329769508|ref|ZP_08260918.1| replicative DNA helicase [Gemella sanguinis M325]
gi|328838723|gb|EGF88321.1| replicative DNA helicase [Gemella sanguinis M325]
Length = 453
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 123/303 (40%), Gaps = 44/303 (14%)
Query: 259 NFRDYFDEI-DAYYHRTSGD--EFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWID 315
N +D +E+ R SG+ I TG+ L++L + G+L I+ P+ GK+ +
Sbjct: 156 NMKDVTNEVFQEIVARMSGEGQNIAIPTGFSTLDQLVGLGKGDLVILAARPSMGKTAFAL 215
Query: 316 ALICNI------NEHAGWKFVLCSMENKVREHARKLL-------EKHIKKPFFEANYGGS 362
+ N+ +E L S+E + +++ + IKK G+
Sbjct: 216 NIALNVAGKNHRDESEKKTVALFSLEMGADQLVSRMICSEGMLDSEKIKK--------GT 267
Query: 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYN 420
+ + + E +L+ I E+ + + V AK +L+ HG+ +VID Y
Sbjct: 268 LDNDDMMKLETAVHFLNQKNIFI--EDSAFIKVNEV--KAKCKLLKNEHGLDLIVID-YL 322
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS 479
+L + + VS++ +K+ A+ C V ++ R + + + P + D+ S
Sbjct: 323 QLLQGSKRTDNRQQEVSEISRSLKQMARELECPVIALSQLSRSVESRHDKRPMMSDLRES 382
Query: 480 AHFINKCDNGIVIHR-----------NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS- 527
D ++R N E + V+V V K RN GT AF+
Sbjct: 383 GSIEQDADIVSFLYRSDYYRSENADENEVQEPSDVSTVEVIVAKNRNGQTGTAELAFMKR 442
Query: 528 YNR 530
YNR
Sbjct: 443 YNR 445
>gi|183980111|ref|YP_001848402.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
gi|443488574|ref|YP_007366721.1| replicative DNA helicase DnaB [Mycobacterium liflandii 128FXT]
gi|183173437|gb|ACC38547.1| replicative DNA helicase DnaB [Mycobacterium marinum M]
gi|442581071|gb|AGC60214.1| replicative DNA helicase DnaB [Mycobacterium liflandii 128FXT]
Length = 460
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 108/274 (39%), Gaps = 18/274 (6%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA G G+ TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 188 MDEIDAIAS-NGGISRGVPTGFTELDEVTNGLHPGQMIIVAARPGVGKSTLGLDFMRSCS 246
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I V+ S+E E +LL K + G RMT +++ + +S
Sbjct: 247 IKHQ--MASVIFSLEMSKTEIVMRLLSAEAKIKLADMRSG----RMTDDDWTRLARRMSE 300
Query: 381 TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR-GLVIDPYNELDHQRPVSQTETEYVSQM 439
+DS P++ + AKA LR LV+ Y +L ++ VS+
Sbjct: 301 ISEAPLYIDDS-PNLTMMEIRAKARRLRQKANLKLVVVDYLQLMTSGKKHESRQVEVSEF 359
Query: 440 LTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR---- 494
+K A+ V ++ R + P L D+ S D I+++R
Sbjct: 360 SRHLKLLAKEIEVPVVAISQLNRGPEQRTDKKPMLSDLRESGSLEQDADMVILLNRPDAF 419
Query: 495 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
DP G D + R K V + LS
Sbjct: 420 ERDDPRGGEADFILAKHRNGPTKTVTVAHQLHLS 453
>gi|422023367|ref|ZP_16369872.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
gi|414094135|gb|EKT55805.1| P4 family phage/plasmid primase [Providencia sneebia DSM 19967]
Length = 818
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 79 EVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD-----TEKVFYGLDDIEGESDIIIVEGEM 133
E V +P++ NG++V ++D K F ++ E +YG +E I +VEGE
Sbjct: 195 EGVYVYPHFDNGRIVRFTFKDPKKTFKYQQPKKYWLPEAHWYGQQTLEKPGTIALVEGEN 254
Query: 134 DKLSMEEAGFLNCVSVPDGAPS 155
D L++ EAG+ V G+ S
Sbjct: 255 DALTLIEAGYTGPVLASIGSLS 276
>gi|424864447|ref|ZP_18288350.1| replicative DNA helicase [SAR86 cluster bacterium SAR86B]
gi|400759193|gb|EJP73375.1| replicative DNA helicase [SAR86 cluster bacterium SAR86B]
Length = 455
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 118/274 (43%), Gaps = 40/274 (14%)
Query: 279 FGISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI--NEHAGWKFVLCSME 335
G STG++ L++ L + G+L +V G P+ GK+ + + N+ +E + ++ S+E
Sbjct: 186 IGSSTGFKDLDKKLQGLQKGDLVVVAGRPSMGKTSFAMNIAENVLLDEESKGAVLIFSLE 245
Query: 336 NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA------WLSNTFSLIRCEN 389
++L K G ++ E +G+ W+ ++
Sbjct: 246 MPGESLTTRMLSGMSKLDQQNVRSGMLKDQELRELLSEGEKLKNMPLWIDDS-------- 297
Query: 390 DSLPSIKWVLDL-AKAAVLR--HGVRGLVIDPYNELDHQRPVS-QTETEYVSQMLTMVKR 445
SI ++L AKA L+ G L++ Y +L Q P+S + +S++ +K
Sbjct: 298 ----SILSPMELRAKARRLKRQEGELSLIVVDYLQL-MQLPLSVENRVNQISEISRSLKS 352
Query: 446 FAQHHACHVWFVAHPRQLHNWVGEPPN----LYDISGSAHFINKCDNGIVIHR----NRD 497
A+ V ++ QL+ V + PN + D+ S D + I+R N D
Sbjct: 353 LAKELDVPVIALS---QLNRAVEQRPNKRPIMADLRDSGAIEQDADVILFIYRDEVYNED 409
Query: 498 PEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
E G ++ ++ + K RN +GT+ FL Y R
Sbjct: 410 SEQG--NKAEIIIGKQRNGPIGTVNLTFLKEYTR 441
>gi|170065465|ref|XP_001867950.1| pom1 [Culex quinquefasciatus]
gi|167882528|gb|EDS45911.1| pom1 [Culex quinquefasciatus]
Length = 660
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 24/257 (9%)
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
WR L +L G ELT++TG GK+ ++ ++ G + S E +
Sbjct: 400 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLALQ-GVSTLWGSFEIRNTR 458
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
A LL + +P + S +EFEQ + TF + P IK V+D
Sbjct: 459 LATTLLRQMAGRPL---DVNLSEFDHWADEFEQLPVYFM-TF------HGQQP-IKVVMD 507
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 458
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 508 AIEHAQYVHDIQHVIIDNLQFMMGVSEESKHLDRYWKQDAIIASFRTFATRKNCHVTLVI 567
Query: 459 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
HPR+ + + I G A + DN ++I R +QV +N+
Sbjct: 568 HPRKERD--TDDLTTSSIFGGAKASQEADNVLIIQDKRLTSVRGKKYLQV----AKNRYS 621
Query: 519 GTIGEAFLSYNRVTGEY 535
G +G L +++++ Y
Sbjct: 622 GDLGIMPLDFDKLSLSY 638
>gi|356668272|gb|AET35363.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 37/214 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFGKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
N G K + +E VR A+ L+ +K
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLMSIEARK 196
>gi|320156438|ref|YP_004188817.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
gi|319931750|gb|ADV86614.1| DNA primase/helicase [Vibrio vulnificus MO6-24/O]
Length = 544
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 88/373 (23%), Positives = 143/373 (38%), Gaps = 40/373 (10%)
Query: 91 KLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME--EAGFLNCVS 148
+LV K R NK+F + G G +II EGE+D L++ ++ VS
Sbjct: 113 QLVAQKIRTENKQFLVKGTLTGELIGAHLFSGGKKLIITEGEIDMLTVSQVQSNKYPVVS 172
Query: 149 VPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV 208
+P+G S +KK + N YL IIL D D G+ A E A +
Sbjct: 173 LPNGISS--AKKAI------------MNNLDYLSNFEEIILCFDMDEVGREGAVEAAELL 218
Query: 209 GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEID 268
+ P KD NE+L+ L + NA+ + GL D +
Sbjct: 219 IDHNVKIMSLP-------LKDPNEMLLAGRTEELINAIWNAQEHRPDGLLPVEDLVEAAL 271
Query: 269 AYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGW 327
+ G+ ++ +N+ N GE+ + GK++++ A H
Sbjct: 272 KPLPK------GLPWIYQGMNDSSNGRHFGEIHTIGAGTGVGKTDFLCAQADFDIRHLHQ 325
Query: 328 KFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRC 387
K L MEN E + L K K+ ++EA G +++ VE Q KA+ T
Sbjct: 326 KVGLFFMENDPTEILQYLGGKADKRLYYEA---GHPDQLDVE--AQRKAYKKYTGRCFIY 380
Query: 388 ENDSLPSIKWV-LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446
+N L W + + ++ G R ID L + E + + ++ + F
Sbjct: 381 DNFGL--CDWSKVKIKILYLIGRGYRIFYIDHLTAL--ATGGDKDEKKELEDIMADIATF 436
Query: 447 AQHHACHVWFVAH 459
A+ H V+H
Sbjct: 437 AKRHNVLFHLVSH 449
>gi|332212594|ref|XP_003255404.1| PREDICTED: twinkle protein, mitochondrial isoform 3 [Nomascus
leucogenys]
Length = 230
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + + +VID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVVIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|50085518|ref|YP_047028.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter sp. ADP1]
gi|49531494|emb|CAG69206.1| replicative DNA helicase;chromosome replication, chain elongation
[Acinetobacter sp. ADP1]
Length = 481
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/265 (19%), Positives = 108/265 (40%), Gaps = 22/265 (8%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ Y + G++ IV P+ GK+ + L+ ++ + ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTYGMQSGDMIIVAARPSMGKTTFAMNLVESVLFNCNLPALV 264
Query: 332 CSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--- 388
SME A +L+ ++YG + G W T ++++ +
Sbjct: 265 FSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKVTGTILQLQEKH 314
Query: 389 -----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443
+ +LP + + A G G ++ Y +L + + ++ +
Sbjct: 315 LYIDDSSALPPTELRARARRIAKQHGGKLGCIMIDYLQLMKVPGMGDNRVGEIGEISRSL 374
Query: 444 KRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEA 500
K A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 375 KALAKEMDCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKES 434
Query: 501 GPIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 KEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|365155945|ref|ZP_09352287.1| replicative DNA helicase [Bacillus smithii 7_3_47FAA]
gi|363627870|gb|EHL78714.1| replicative DNA helicase [Bacillus smithii 7_3_47FAA]
Length = 454
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 31/326 (9%)
Query: 218 WPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHR 273
+ +++DVD + E K ++E A+ G N +D +D I+ ++R
Sbjct: 130 YTREDDVDDLLNDAE----------KRIMEVAQRKNTSGFHNIKDVLVRTYDNIEMLHNR 179
Query: 274 TSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332
GD GI TG+ L+ + +L IV P+ GK+ + + N+ +
Sbjct: 180 -KGDVTGIPTGFAELDRMTAGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTDENVAIF 238
Query: 333 SMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390
S+E + ++L E +I G+ + LSN I D
Sbjct: 239 SLEMGAEQLVMRMLCAEGNINAQNLRT---GTLTEEDWRKLTMAMGSLSNAGIFI----D 291
Query: 391 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 448
P I+ AK L+ HG+ +VID + + + VS++ +K A+
Sbjct: 292 DTPGIRINEIRAKCRRLKQEHGLGMIVIDYLQLIQGSGRSGENRQQEVSEISRSLKALAR 351
Query: 449 HHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDR 505
V ++ R + + P + DI S D ++R+ D E+ +
Sbjct: 352 ELEVPVIALSQLSRGVEQRQDKRPMMSDIRESGAIEQDADIVAFLYRDDYYDKESENKNI 411
Query: 506 VQVCVRKVRNKVVGTIGEAFLS-YNR 530
+++ + K RN VGT+ AF+ YN+
Sbjct: 412 IEIIIAKQRNGPVGTVQLAFIKEYNK 437
>gi|350559406|ref|ZP_08928246.1| replicative DNA helicase [Thioalkalivibrio thiocyanoxidans ARh 4]
gi|349781674|gb|EGZ35957.1| replicative DNA helicase [Thioalkalivibrio thiocyanoxidans ARh 4]
Length = 453
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 62/278 (22%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 270 YYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
Y T GI TG++ L+EL + L G+L +V G P+ GK+ + NI E+ K
Sbjct: 176 YLFETKSPITGIPTGYQDLDELTSGLHAGDLVVVAGRPSMGKTSF----AMNIAEYVAMK 231
Query: 329 ----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W--L 378
+ SME + A +LL S R+ ++ G+ W L
Sbjct: 232 TAQPIAVFSMEMPGEQIAMRLLS--------------SMGRINQQKLRSGRLDDGDWPRL 277
Query: 379 SNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTET 433
S+ S++ D P++ A++ L H GL++ Y +L +
Sbjct: 278 SSAVSMLSEAPLYIDDTPALSPTELRARSRRLMREHKGLGLIVVDYLQLMQSPGSRENRA 337
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+S++ +K A+ + + ++ R L + P + D+ S D + +
Sbjct: 338 TEISEISRSLKALAKELSVPMIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFV 397
Query: 493 HR-----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+R + P+ G ++ V K RN +GT+ F
Sbjct: 398 YRDEVYNDESPDKG---TAEIIVAKQRNGPIGTVRLTF 432
>gi|356668206|gb|AET35330.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P FKD NE L+ P + + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------FKDPNECLLAGQPDTIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|406830803|ref|ZP_11090397.1| replicative DNA helicase [Schlesneria paludicola DSM 18645]
Length = 454
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 126/314 (40%), Gaps = 46/314 (14%)
Query: 236 YLGPGALKEVVENAELYPIMGLFNFRDYFDEI--DAYYHRT----------SGDEFGIST 283
Y G E+++ AE I G+F ++ +I D H T G+ G+ST
Sbjct: 133 YDGSDDTAEMLKRAE-QGIFGIFESQETSSKISMDDIMHETLDRINTRLGREGNISGLST 191
Query: 284 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINE---HAG-WKFVLCSMENKV 338
G+ L++ N P EL IV P+ GK+ A +CNI E AG ++ S+E
Sbjct: 192 GFNDLDKQTNGFQPAELVIVAARPSMGKT----AFVCNIAEWVAGAGETATIIFSLEQSK 247
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE---NDSLPSI 395
E A + L A G R + E ++ A L + L R + +DS
Sbjct: 248 LELAERFL-------CIRAKLDGHRLRKGLLEPDERHALLEASSELSRLQLFIDDSPGRT 300
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455
+ + R GLVI Y +L + ++Q+ +K A+ + +
Sbjct: 301 VAQISAICRRLKRRNNLGLVIIDYLQLIEPEDKRINREQQIAQITRRLKGIAKENGLPLI 360
Query: 456 FVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA-GPIDR---VQ 507
++ QL+ V + P L D+ S D + +HR P+A P DR +
Sbjct: 361 ALS---QLNRGVELREDKRPKLADLRESGAIEQDADIIMFLHR---PDAYNPEDRPGLAE 414
Query: 508 VCVRKVRNKVVGTI 521
+ V K R+ G +
Sbjct: 415 IVVAKHRSGPTGIV 428
>gi|262279565|ref|ZP_06057350.1| replicative DNA helicase;chromosome replication [Acinetobacter
calcoaceticus RUH2202]
gi|262259916|gb|EEY78649.1| replicative DNA helicase;chromosome replication [Acinetobacter
calcoaceticus RUH2202]
Length = 481
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 51/264 (19%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFLELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNKLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + +Q ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQQMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMHCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|297585572|ref|YP_003701352.1| replicative DNA helicase [Bacillus selenitireducens MLS10]
gi|297144029|gb|ADI00787.1| replicative DNA helicase [Bacillus selenitireducens MLS10]
Length = 453
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 129/321 (40%), Gaps = 33/321 (10%)
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTG 284
+ANE + L A + ++E A+ +D FD+I+ H+ G+ GI TG
Sbjct: 130 EANEEVDILLSDAERRILEVAQKKNAGEFIEIKDVLVEAFDKIETLQHQ-QGEVTGIPTG 188
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
+ EL V G +L IV P+ GK+ + + N+ + S+E +
Sbjct: 189 F---TELDRVTAGFQRSDLIIVAARPSVGKTAFALNISQNVATKTDENVAIFSLEMGADQ 245
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-----DSLPSI 395
++L E N A+R+ E W T ++ D P I
Sbjct: 246 LVMRML-------CAEGNI--DAQRLRTGRLEDDD-WQRLTMAMGSLSKAGIYIDDTPGI 295
Query: 396 KWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
K +K L+ G+ ++ID + S+ + VS++ +K A+
Sbjct: 296 KVKEIRSKCRKLKQERGLGMIMIDYLQLISGDARSSEGRQQEVSEISRELKGLARELEVP 355
Query: 454 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCV 510
V ++ R + + + P + DI S D ++R+ D E+ D +++ +
Sbjct: 356 VIALSQLSRGVESRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDQESENKDTIEIII 415
Query: 511 RKVRNKVVGTIGEAFLS-YNR 530
K RN VGT+ AF+ YN+
Sbjct: 416 AKQRNGPVGTVELAFVKHYNK 436
>gi|312372649|gb|EFR20570.1| hypothetical protein AND_19883 [Anopheles darlingi]
Length = 359
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 104/257 (40%), Gaps = 24/257 (9%)
Query: 285 WRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
WR L +L G ELT++TG GK+ ++ ++ + G + S E +
Sbjct: 92 WRRYPTLNKLLKGHRKGELTVLTGPTGCGKTTFMSDYSLDLAQQ-GVSTLWGSFEIRNTR 150
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD 400
A LL + + +P E + ER +EFE+ L F + IK V++
Sbjct: 151 LAATLLRQMVGQPLDE--HLVDFERW-ADEFER----LPIYFMTFHGQQ----PIKVVME 199
Query: 401 LAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLTMVKRFAQHHACHVWFVA 458
+ A H ++ ++ID + S+ Y Q ++ + FA CHV V
Sbjct: 200 AIEHAQYVHDIQHVIIDNLQFMMGMLEESKHLDRYWKQDAIIGAFRSFATRRNCHVTLVI 259
Query: 459 HPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518
HPR+ + + I G A + DN ++I R +Q+ +N+
Sbjct: 260 HPRKERD--TDELTTSSIFGGAKASQEADNVLLIQDKRLTSVRGKKYLQIA----KNRYS 313
Query: 519 GTIGEAFLSYNRVTGEY 535
G +G L +++ + Y
Sbjct: 314 GDLGIMPLEFDKASLSY 330
>gi|356668210|gb|AET35332.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKVTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|283768423|ref|ZP_06341335.1| replicative DNA helicase [Bulleidia extructa W1219]
gi|283104815|gb|EFC06187.1| replicative DNA helicase [Bulleidia extructa W1219]
Length = 454
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 68/322 (21%), Positives = 126/322 (39%), Gaps = 40/322 (12%)
Query: 236 YLGPGALKEVVENAELYPIM--------GLFNFRDYFDEIDAYYHRTS---GDEFGISTG 284
Y G L E + AE Y + G + DE+ R + D G T
Sbjct: 125 YEGVSDLGEYLSEAEEYILRIARSREAGGFKDMIQTMDELKNELKRNAELKTDVTGYKTA 184
Query: 285 WRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 343
+ L+ + + + G+L +V P GK+ + ++ N+ H V+ S+E + R
Sbjct: 185 YADLDRITHGLQKGDLIVVAARPAMGKTAFALNVLKNVANHNDGAVVMFSLEMGNVDLGR 244
Query: 344 KLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVL 399
++L + ++N S + +E+ L + + +N D P+ K V
Sbjct: 245 RILS---AESGIQSNKLKSPRNLNNDEWN----LLYEVMNDFKMKNKIFIDDAPNRK-VR 296
Query: 400 DL---AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
D+ + +HG+ +V+D L R + + VS++ +K A+ V
Sbjct: 297 DMYQKCREIKKQHGLSLVVVDYIQLLSTDRRQGENRQQEVSEISRALKGLARELEVPVMA 356
Query: 457 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN------------RDPEAGPI 503
++ R++ + P L D+ S D ++++R R E G
Sbjct: 357 LSQLSREVEKRENKRPMLADLRESGAIEQDADIVMMLYRQAYYDRAGEGAEKRPEEDGKA 416
Query: 504 DRVQVCVRKVRNKVVGTIGEAF 525
D ++V + K RN GT+ AF
Sbjct: 417 DELEVIIAKHRNGETGTVKLAF 438
>gi|255304948|ref|NP_001157285.1| twinkle protein, mitochondrial isoform C [Homo sapiens]
Length = 230
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + + ++ID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|334135660|ref|ZP_08509143.1| replicative DNA helicase [Paenibacillus sp. HGF7]
gi|333606855|gb|EGL18186.1| replicative DNA helicase [Paenibacillus sp. HGF7]
Length = 451
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 154/364 (42%), Gaps = 37/364 (10%)
Query: 180 YLKQ-ASRIILATDGDPPGQALAEE-LARRVGRERCWRVRWPKKNDVDHFKDANEVLMYL 237
YL + A+ + A + D GQ + E+ L RR+ +R + D + A++V M L
Sbjct: 89 YLSELANAVPTAANIDYYGQIVEEKSLLRRL-------IRTASQIVSDGYASADDVGMML 141
Query: 238 GPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYN 293
+ ++E ++ G + RD F+ ++ Y G GI +G+ L+++ +
Sbjct: 142 NDAEAR-ILEISQRRASNGFISIRDVLMEVFERVEFLYSHKGGST-GIPSGFNDLDKMTS 199
Query: 294 VLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352
+L IV P+ GK+ + + N+ A + S+E A +L+++ I
Sbjct: 200 GFQRSDLIIVAARPSVGKTAFALNIAQNVGVRAKETVAIFSLEM----GAAQLVQRMICA 255
Query: 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-----DSLPSIKWVLDLAKAAVL 407
EAN + R F +G W T ++ D PS+ AK L
Sbjct: 256 ---EANVDATRLR---SGFLEGDDWEKLTMAIGSLSEADIYIDDSPSVTVADIRAKCRRL 309
Query: 408 RH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLH 464
+ G+ G+++ Y +L R + VS++ +K+ A+ V ++ R +
Sbjct: 310 KQEKGL-GMILIDYLQLIQGRGKGDNRQQEVSEISRTLKQIARELNVPVIALSQLSRGVE 368
Query: 465 NWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIG 522
+ P + D+ S D ++R+ D E+ + +++ + K RN VGT+
Sbjct: 369 QRQDKRPMMSDLRESGSIEQDADIVAFLYRDDYYDKESEKKNIIEIIIAKQRNGPVGTVE 428
Query: 523 EAFL 526
AFL
Sbjct: 429 LAFL 432
>gi|451822510|ref|YP_007458711.1| replicative DNA helicase DnaC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788489|gb|AGF59457.1| replicative DNA helicase DnaC [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 436
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 118/274 (43%), Gaps = 28/274 (10%)
Query: 266 EIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEH 324
EI+ Y T G+ G+ TG+ ++ N L GEL ++ G P++GK+ + NI +
Sbjct: 163 EIEKRYQ-TGGEIPGMQTGFIDFDKATNGLKKGELFVIGGRPSTGKT----LIALNIADG 217
Query: 325 AG---WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNT 381
G +K ++ +E + L + + G +++ +EFE+ L+ T
Sbjct: 218 LGINKYKVLIVELEMTPESLGMRRLAYNSNIQAQKLQTG----KLSSQEFEK----LALT 269
Query: 382 FSLIRCEND------SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
F+ + N+ S +I + AKA HG+ L+ID +D P +
Sbjct: 270 FNSLSQRNNIFTDCSSYQNILTIKSKAKAVKQIHGLDVLIIDHLTLMDI--PSKGNRSAE 327
Query: 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+ ++ +K A+ ++ + R + + P + D+ S + D + +R
Sbjct: 328 IGEVTRQLKLLAKELDINIILLCQLSRAVEQRTDKRPIMSDLRESGNIEQDADLVMFAYR 387
Query: 495 NR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ +PE + ++ + K RN VGT+ +L
Sbjct: 388 DEYYNPETEDKNIMEWIIAKQRNGRVGTLKFGYL 421
>gi|385236856|ref|YP_005798195.1| hypothetical protein ABTW07_1305 [Acinetobacter baumannii
TCDC-AB0715]
gi|387124694|ref|YP_006290576.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|417579163|ref|ZP_12229996.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|417878519|ref|ZP_12523130.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|421628300|ref|ZP_16069084.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
gi|323517353|gb|ADX91734.1| hypothetical protein ABTW07_1305 [Acinetobacter baumannii
TCDC-AB0715]
gi|342232632|gb|EGT97405.1| replicative DNA helicase [Acinetobacter baumannii ABNIH3]
gi|385879186|gb|AFI96281.1| replicative DNA helicase [Acinetobacter baumannii MDR-TJ]
gi|395568301|gb|EJG28975.1| replicative DNA helicase [Acinetobacter baumannii Naval-17]
gi|408707865|gb|EKL53145.1| replicative DNA helicase [Acinetobacter baumannii OIFC180]
Length = 470
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 116/277 (41%), Gaps = 34/277 (12%)
Query: 280 GISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
G++TG+ AL+ + + G+L ++ P+ GK+ + L NI + ++ S+E K
Sbjct: 194 GVNTGFVALDHRIGEINNGDLVVIAARPSMGKTAFALNLATNIATNLRKPVLIESIEMK- 252
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFE-QGKAWLSNTFSLIRCEN------DS 391
R + K I G + ++ E G+ W T + +N D
Sbjct: 253 ----RDAITKRIISSV------GDLKLSKIKNAELDGEDWTCFTEAAKVIQNSPLMIMDG 302
Query: 392 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNE--LDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+I + A+ G G + Y + + P S +E + ++ + +KR A
Sbjct: 303 AVTISDIRKHARKVRSEEGSLGAIFVDYLQKIITPHLPASASENDRLTYISDSLKRVAME 362
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
C V+ ++ RQL N + P + D+ GS D + ++R N + P
Sbjct: 363 FNCPVFALSQLSRQLENRSDKRPIMSDLRGSGAIEQDADVILFLYRDEYYNGEKSKTP-G 421
Query: 505 RVQVCVRKVRNKVVGTIGEAF----LSYNRVTGEYMD 537
++V KVR+ G++G+ F L Y+R + + D
Sbjct: 422 LLEVNAAKVRD---GSVGKTFLCSELDYSRFSNVHSD 455
>gi|356668224|gb|AET35339.1| DNA primase/helicase protein [uncultured virus]
Length = 244
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|430762517|ref|YP_007218374.1| Replicative DNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
gi|430012141|gb|AGA34893.1| Replicative DNA helicase [Thioalkalivibrio nitratireducens DSM
14787]
Length = 453
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 111/278 (39%), Gaps = 43/278 (15%)
Query: 270 YYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWK 328
Y T G TG++ L+EL + L PG+L +V G P+ GK+ + NI E+ K
Sbjct: 176 YLFETKSPITGTPTGYQDLDELTSGLHPGDLVVVAGRPSMGKTSF----AMNIAEYVAMK 231
Query: 329 ----FVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA----W--L 378
+ SME + A +LL S R+ ++ G+ W L
Sbjct: 232 TAQPIAVFSMEMPGEQIAMRLLS--------------SMGRINQQKLRSGRLDDGDWPRL 277
Query: 379 SNTFSLIRCEN---DSLPSIKWVLDLAKAAVL--RHGVRGLVIDPYNELDHQRPVSQTET 433
++ S++ D P++ A++ L H GL++ Y +L +
Sbjct: 278 TSAVSMLSEAPLYIDDTPALSPTELRARSRRLMREHKGLGLIVVDYLQLMQSPGGRENRA 337
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+S++ +K A+ + + ++ R L + P + D+ S D + +
Sbjct: 338 TEISEISRSLKALAKELSVPMIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFV 397
Query: 493 HRN-----RDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+R+ P+ G ++ V K RN +GT+ F
Sbjct: 398 YRDEVYNEESPDKG---TAEIIVAKQRNGPIGTVRLTF 432
>gi|415721223|ref|ZP_11468430.1| replicative DNA helicase [Gardnerella vaginalis 00703Bmash]
gi|388061011|gb|EIK83680.1| replicative DNA helicase [Gardnerella vaginalis 00703Bmash]
Length = 487
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 110/260 (42%), Gaps = 20/260 (7%)
Query: 278 EFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
E G+ TG+R ++++ L PG++ +V G P GKS + H ++ S+E
Sbjct: 204 EKGVPTGFRDIDDMTQGLQPGQMVVVAGRPAMGKSTLGIDFARSAALHHNMTTIVFSLEM 263
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIK 396
E A++++ P A + G+ E +T + + + A+ S +DS P++
Sbjct: 264 NKLELAQRIIAAETDIP-MTAMHRGTPEDITTDRWTKLNAFWSKMKDAPLFIDDS-PNMS 321
Query: 397 WVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ AK L+ ++ +VID + + V + E VS+ +K A+ V
Sbjct: 322 LMEIRAKCRRLKQTNDLKLVVIDYLQLMTSGKRVESRQQE-VSEFSRALKLLAKELEVPV 380
Query: 455 WFVAH----PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRV 506
++ P ++ + P L D+ S D ++HR N++ G D
Sbjct: 381 VALSQLNRGPEMRND---KKPQLSDLRESGSIEQDADVVFLVHRPDFYNKEDRPGEAD-- 435
Query: 507 QVCVRKVRNKVVGTIGEAFL 526
+ + K RN T AFL
Sbjct: 436 -IIMAKHRNGPTETFNLAFL 454
>gi|356668214|gb|AET35334.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTLKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|429743772|ref|ZP_19277312.1| replicative DNA helicase [Neisseria sp. oral taxon 020 str. F0370]
gi|429164639|gb|EKY06757.1| replicative DNA helicase [Neisseria sp. oral taxon 020 str. F0370]
Length = 479
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 260 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 317
R+ + ID Y R + DE G+STG+ L++ + L PG+L IV G P+ GK+ A
Sbjct: 190 LREVVERIDMLYARDNPDEVTGVSTGFIDLDKKTSGLQPGDLIIVAGRPSMGKT----AF 245
Query: 318 ICNINEHAGWKFVL 331
NI EH + L
Sbjct: 246 SINIAEHVALEAKL 259
>gi|262369753|ref|ZP_06063081.1| replicative DNA helicase;chromosome replication [Acinetobacter
johnsonii SH046]
gi|381196517|ref|ZP_09903859.1| replicative DNA helicase [Acinetobacter lwoffii WJ10621]
gi|262315821|gb|EEY96860.1| replicative DNA helicase;chromosome replication [Acinetobacter
johnsonii SH046]
Length = 481
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 56/276 (20%), Positives = 113/276 (40%), Gaps = 23/276 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 320
D FD+++ + G G++TG+ L N+ + G+L IV P+ GK+ + L+ +
Sbjct: 195 DVFDKLNEL-SQMEGSITGLTTGFLELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVES 253
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
+ + ++ SME A +L+ ++YG + G W
Sbjct: 254 VLFNNDLPALVYSMEMPADSIAMRLI----------SSYGKVHQGHLRSGKLDGDEWSKV 303
Query: 381 TFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432
T ++++ + + +LP + + A G G ++ Y +L +
Sbjct: 304 TGTILQLQEKKLYIDDSSALPPTEVRARARRIAKQHDGKLGCIMVDYLQLMKVPGMGDNR 363
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+S++ +K A+ C V ++ R L N + P + D+ S D +
Sbjct: 364 VGEISEISRSLKALAKEMMCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMF 423
Query: 492 IHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 424 IYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|319638415|ref|ZP_07993177.1| replicative DNA helicase [Neisseria mucosa C102]
gi|317400164|gb|EFV80823.1| replicative DNA helicase [Neisseria mucosa C102]
Length = 471
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 260 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 317
++ + ID Y R + DE GISTG+ L++ + L PG+L IV G P+ GK+ A
Sbjct: 182 LKEVVERIDMLYSRDNPDEVTGISTGFIDLDKKTSGLQPGDLIIVAGRPSMGKT----AF 237
Query: 318 ICNINEHAGWKFVLCSMENKV 338
NI EH ++ENK+
Sbjct: 238 SINIAEH-------VAVENKL 251
>gi|225075190|ref|ZP_03718389.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens
NRL30031/H210]
gi|224953365|gb|EEG34574.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens
NRL30031/H210]
Length = 471
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 13/81 (16%)
Query: 260 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 317
++ + ID Y R + DE GISTG+ L++ + L PG+L IV G P+ GK+ A
Sbjct: 182 LKEVVERIDMLYSRDNPDEVTGISTGFIDLDKKTSGLQPGDLIIVAGRPSMGKT----AF 237
Query: 318 ICNINEHAGWKFVLCSMENKV 338
NI EH ++ENK+
Sbjct: 238 SINIAEH-------VAVENKL 251
>gi|254251743|ref|ZP_04945061.1| hypothetical protein BDAG_00940 [Burkholderia dolosa AUO158]
gi|124894352|gb|EAY68232.1| hypothetical protein BDAG_00940 [Burkholderia dolosa AUO158]
Length = 320
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 49/243 (20%), Positives = 93/243 (38%), Gaps = 31/243 (12%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE 323
D + +H G+ T W + + PGE+T+ GV GKS + ++ +
Sbjct: 32 LDAVIQMFHGEEEQSIGMPTPWSKVGDRLKFRPGEVTLWAGVNGHGKSGALGYVMLH-GM 90
Query: 324 HAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFS 383
AG + + S E R+ ++ + GG+ T++ + W +
Sbjct: 91 AAGARSCIASFEMAPRQIMHRMCRQ---------AAGGAVP--TIDAISKFHRWTDDRLW 139
Query: 384 LIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ--MLT 441
L + P AV R+ + L +D + +D +Y Q +
Sbjct: 140 LYAQNGKATPD-------RMIAVSRYCRKELNVD-HMVIDSLMKCGLAPDDYTGQKNFVD 191
Query: 442 MVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHRNRD 497
+ A+ H+ V H R+ GE P+ +DI G+ + DN ++++RN+
Sbjct: 192 SLCVLARDTGLHIHLVHHVRK-----GEKESAVPDKFDIKGAGEITDLVDNVLIVYRNKR 246
Query: 498 PEA 500
E+
Sbjct: 247 KES 249
>gi|206890471|ref|YP_002248184.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742409|gb|ACI21466.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 460
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 31/327 (9%)
Query: 228 KDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGIST 283
+DA E++ Y A + + E +E +N +D F I++ Y + + G+S+
Sbjct: 139 EDAEEMIDY----AERLIFEISEKRTNTSFYNMKDVVKQTFKIIESMYEKKAVIT-GVSS 193
Query: 284 GWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKF----VLCSMENKV 338
G++ L+EL + PG+L I+ G P GK+ A NI +H G + S+E
Sbjct: 194 GFKDLDELTSGFQPGDLIIIGGRPGMGKT----AFSLNIAQHVGIELGEPVAFFSLEMSK 249
Query: 339 REHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV 398
+ A +LL I A G + E LS + I ++ S S+ +
Sbjct: 250 EQIAMRLL-SSIAMVNSSALRKGFISKRDWERITDAAVKLSE--APIYIDDSSQMSVLEI 306
Query: 399 LDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVA 458
A+ + G GL++ Y +L R + ++ + +K A+ V ++
Sbjct: 307 RAKARRLKMEKGRLGLIVIDYLQLMRSRNNYDVREQEIADISRSLKAMAKELKVPVIALS 366
Query: 459 H-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPIDRVQVCVRKV 513
R + P L ++ S D I ++R N+ A + +V V K
Sbjct: 367 QLNRSVEKTSDRRPTLANLRESGAIEQDADVIIFLYRDEVYNKKNPANK-GKAEVIVAKQ 425
Query: 514 RNKVVGTIGEAFLS-YNRV---TGEYM 536
RN + FL+ Y R T +YM
Sbjct: 426 RNGPTDIVYLTFLNDYTRFLDYTDKYM 452
>gi|269926920|ref|YP_003323543.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
gi|269790580|gb|ACZ42721.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798]
Length = 446
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 123/313 (39%), Gaps = 26/313 (8%)
Query: 223 DVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFN-FRDYFDEIDAYYHRTSGDEFGI 281
+VD D E ++Y V +N + L + ++FD++D Y H+ G+ GI
Sbjct: 134 EVDEALDRAEQILY-------RVAQNRSTKDFISLRDALAEFFDKLD-YQHQHRGEIVGI 185
Query: 282 STGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
TG+R L++L L +L IV P+ GK+ + + N + S+E +
Sbjct: 186 PTGFRDLDQLTGGLQRSDLVIVAARPSVGKTAFAMCMAANAAIKHNVPVGIFSLEMSAEQ 245
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL----IRCENDSLPSIK 396
+LL E RM + ++ + L I ++ S S +
Sbjct: 246 LVLRLLA-------METGIDSHRLRMGFLDDDEWDKLIRAIGRLSEVPIFIDDTSAASSQ 298
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
+ A+ + GV+ +VID + R + + +S++ +K A+ V
Sbjct: 299 ELRSKARRLHAQKGVQMIVIDYLQLMQSGR--TDNRVQEISEISRGLKGLARELNIPVVA 356
Query: 457 VAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKV 513
++ R + P L D+ S D + I+R +PE + ++ V K
Sbjct: 357 LSQLSRAVEQRQDHRPQLSDLRESGSIEQDADVVMFIYREEIYNPETDKKNIAEIHVAKH 416
Query: 514 RNKVVGTIGEAFL 526
RN VG + F
Sbjct: 417 RNGPVGIVPLRFF 429
>gi|161617950|ref|YP_001595430.1| helicase/primase [Enterobacteria phage phiEcoM-GJ1]
gi|150416369|gb|ABR68747.1| helicase/primase [Enterobacteria phage phiEcoM-GJ1]
Length = 587
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 85/405 (20%), Positives = 151/405 (37%), Gaps = 62/405 (15%)
Query: 81 VIAFPYWRNGKLVNCKYRDFNKK-FWQEKDTEK----VFYGLDDIEGESDIIIVEGEMDK 135
+A Y +NGKLV K + NKK W DT+ F I G++ + I EGE D
Sbjct: 116 ALAHGYTKNGKLVRWKIKLLNKKVMWSVGDTQDNDPYNFMAAKAIGGKT-LFITEGEEDC 174
Query: 136 LSM-------------EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
+++ E+ F +S+ DG+ S + +EE +++
Sbjct: 175 IALRQILKTMNRGSAYEDLDFA-VISLSDGSSSVHKCLSRVAEEIKQRWE---------- 223
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV---DHFKDANEVLMYLGP 239
++++ D D PG+ A+E R + + ND K +++
Sbjct: 224 ---QVVIVFDDDEPGRKAAKEACRLLPGAMIATLPANDANDCLKRGLLKATQSAVVFRAA 280
Query: 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNEL-YNVLPGE 298
L + N EL + DE+ E G+ W L +L + E
Sbjct: 281 RPLPTALVNKELL-------MEELDDEV----------EQGVDYPWPKLTDLMFGQRRAE 323
Query: 299 LTIVTGVPNSGKSEWIDALI-CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357
+ + G GK+ ++ NI +H W ME E R++ + P++E
Sbjct: 324 VITIGGAEGGGKTTLSRQIVHHNITKH-DWGVFTAYMEETPTETLRRMAGLNDNLPYWEP 382
Query: 358 NYGGSAERMTVEEFEQGKA-WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGL 414
+ R +F Q A L N R + P W D K + + G +
Sbjct: 383 AFTREDPRYDEAKFRQTAAKMLRNMEIWDRKQAGEDPYETW--DGLKTILRQIGPDIDMF 440
Query: 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
V+D L S+ + +++ ++ + + A + HV ++H
Sbjct: 441 VLDNLTYLSEGISASE-KNDFLGKLYADITKLADQYQFHVNILSH 484
>gi|337752141|ref|YP_004646303.1| DnaC protein [Paenibacillus mucilaginosus KNP414]
gi|379725046|ref|YP_005317177.1| DnaC protein [Paenibacillus mucilaginosus 3016]
gi|386727795|ref|YP_006194121.1| replicative DNA helicase [Paenibacillus mucilaginosus K02]
gi|336303330|gb|AEI46433.1| DnaC [Paenibacillus mucilaginosus KNP414]
gi|378573718|gb|AFC34028.1| DnaC [Paenibacillus mucilaginosus 3016]
gi|384094920|gb|AFH66356.1| replicative DNA helicase [Paenibacillus mucilaginosus K02]
Length = 455
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 121/284 (42%), Gaps = 24/284 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICN 320
+ FD+++ Y++ G G+ +G+ L+++ + +L IV P+ GK+ + + N
Sbjct: 171 EVFDKVEMLYNQ-KGSTTGVRSGFADLDKMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 229
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
I + S+E A +L+ + I EAN R F + W
Sbjct: 230 IGVREKETVAIFSLEM----GAAQLVNRMI---CAEANVDAGRLRTG---FLENDDWEKL 279
Query: 381 TFSLIRCEN-----DSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTET 433
T ++ D PS+ AK L+ G+ G+++ Y +L H R
Sbjct: 280 TMAIGSLSEANIYIDDSPSVTVADIRAKCRRLKKEKGL-GMILIDYLQLIHGRGKGDNRQ 338
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+ VS++ +K+ A+ V ++ R + + P + D+ S D +
Sbjct: 339 QEVSEISRTLKQIARELNVPVIALSQLSRGVEQRQDKRPMMSDLRESGSIEQDADIVAFL 398
Query: 493 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL-SYNRVTG 533
+R+ D E+ D +++ + K RN VGT+ AFL +YN+ G
Sbjct: 399 YRDDYYDKESEKKDIIEIIIAKQRNGPVGTVELAFLKNYNKFVG 442
>gi|194386050|dbj|BAG59589.1| unnamed protein product [Homo sapiens]
Length = 230
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 394 SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453
SI+ V+D + AV + + ++ID + +S ++ + ++FA + CH
Sbjct: 39 SIRTVIDTMQHAVYVYDICHVIIDNLQFMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCH 98
Query: 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRK 512
V V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 99 VTLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS--- 152
Query: 513 VRNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 153 -KNRFDGDVGVFPLEFNK 169
>gi|356668208|gb|AET35331.1| DNA primase/helicase protein [uncultured virus]
Length = 246
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|433462817|ref|ZP_20420388.1| DNA primase [Halobacillus sp. BAB-2008]
gi|432188273|gb|ELK45477.1| DNA primase [Halobacillus sp. BAB-2008]
Length = 604
Score = 41.6 bits (96), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 41/199 (20%)
Query: 82 IAFPYWRN--GKLVNCKYRDFNK---KFWQEKDTE-----KVFYGLD----DIEGESDII 127
+ FP RN GK V R K K+ +TE ++ Y D I E +I
Sbjct: 205 VIFP-LRNHLGKTVAFAGRSLGKQEPKYLNSPETELFHKGRLLYNFDQARASIRKEKSVI 263
Query: 128 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 187
+ EG D +S ++AG N V+ A SS + K +I
Sbjct: 264 LFEGFGDVISADQAGVHNGVATMGTAISSA------------------QANLLKKYVDQI 305
Query: 188 ILATDGDPPGQALAEELARRVGRERC--WRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 245
I+ DGD PG A + A+ V C + R P D D F + + G KEV
Sbjct: 306 IVCYDGDKPGIEAAVKAAKLVKSVGCQTYVARVPDGLDPDDF-----IQKHGGERFRKEV 360
Query: 246 VENAELY-PIMGLFNFRDY 263
++ +E Y M + RDY
Sbjct: 361 LDTSETYISFMMSYLRRDY 379
>gi|389706243|ref|ZP_10186333.1| replicative DNA helicase [Acinetobacter sp. HA]
gi|388610720|gb|EIM39835.1| replicative DNA helicase [Acinetobacter sp. HA]
Length = 479
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 121/301 (40%), Gaps = 39/301 (12%)
Query: 238 GPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLP 296
GP A+ VV D FD+++ + G G++TG+ L N+ +
Sbjct: 183 GPKAINTVVA--------------DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQS 227
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
G+L IV P+ GK+ + L+ ++ + ++ SME A +L+ F
Sbjct: 228 GDLIIVAARPSMGKTTFAMNLVESVLFNNNLPALVYSMEMPADSIAMRLISS-----FGR 282
Query: 357 ANYGG-SAERMTVEEFEQGKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVL 407
+ G A +M +E W T +++ + + +LP + + A +
Sbjct: 283 VHQGHLRAGKMDSDE------WSKVTSTIVHLQEKNLYIDDSSALPPTEVRARARRIAKM 336
Query: 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW 466
G G ++ Y +L + +S++ +K A+ C V ++ R L N
Sbjct: 337 HGGKLGCIMVDYLQLMKVPGMGDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENR 396
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEA 524
+ P + D+ S D + I+R+ + E+ ++ + K RN +GT+ A
Sbjct: 397 PNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLA 456
Query: 525 F 525
F
Sbjct: 457 F 457
>gi|356668222|gb|AET35338.1| DNA primase/helicase protein [uncultured virus]
Length = 246
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668254|gb|AET35354.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|302334834|ref|YP_003800041.1| primary replicative DNA helicase [Olsenella uli DSM 7084]
gi|301318674|gb|ADK67161.1| primary replicative DNA helicase [Olsenella uli DSM 7084]
Length = 464
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 113/282 (40%), Gaps = 29/282 (10%)
Query: 234 LMYLGPGALKEVVENAELYPIMGLFN------FRDYFDEIDAYYHRTS------GDEFGI 281
L + P KEVV++AE ++G+ N + D + + Y + G+
Sbjct: 140 LAFDAPEDTKEVVDSAENL-LLGVTNREIGDSYSDLSEVMGDLYTELGEACMDPAEFMGV 198
Query: 282 STGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340
TG+ ++ L + PG++ +V P GK+ + L N H G S+E E
Sbjct: 199 QTGYPGIDSRLQGLRPGQMIVVGARPGVGKTSFALNLATNAAAH-GASVAFFSLEMSKVE 257
Query: 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWV 398
A++LL + P SA R + Q L T L R + D P
Sbjct: 258 IAQRLLSAYAHIPL-------SAIRGARIQDNQWPTILDATRDLSRLDIMIDDTPGTTVT 310
Query: 399 LDLAKAAVLRHGV-RGLVIDPYNEL---DHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
AKA + +G RG+V+ Y +L R + VS+M +K A+ V
Sbjct: 311 EIRAKARRMLNGKERGIVLVDYLQLLSPPSGRQRMDSRATEVSEMSRGIKIMAKDLEVPV 370
Query: 455 WFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495
++ RQ+ + G+ P L D+ S D I++ R+
Sbjct: 371 VALSQLNRQVTDRKGQRPQLSDLRESGSIEQDADIVILLDRS 412
>gi|356668258|gb|AET35356.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|448824566|ref|YP_007417738.1| replicative DNA helicase [Corynebacterium urealyticum DSM 7111]
gi|448278063|gb|AGE37487.1| replicative DNA helicase [Corynebacterium urealyticum DSM 7111]
Length = 506
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 127/305 (41%), Gaps = 38/305 (12%)
Query: 242 LKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
++ VV+NA E++ + DY DEID + G GI+TG++ L+
Sbjct: 198 VESVVDNAQQEMFALTNSATSEDYEVFERLLDPTLDEIDELESQ-GGTAKGIATGFQDLD 256
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+L N L G++ IV P GKS + + + VL S+E E ++L
Sbjct: 257 DLTNGLHGGQMIIVAARPGVGKSTLALDFMRSASIRQNKASVLFSLEMSKSEVMMRILSA 316
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
+ A GG E E + + + I D P++ + AKA L+
Sbjct: 317 E-AEVHLSAMRGGKMEEDDWERLTRRIGEIDKSPIFI----DDSPNLTMMEIRAKARRLK 371
Query: 409 --HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
H + GL++ Y +L ++ + VS+ +K A+ V VA QL+
Sbjct: 372 QQHDI-GLIVVDYLQLMSSGKKVESRQQEVSEFSRQLKLLAKE--VDVPLVAIS-QLNRG 427
Query: 467 V---GEP--PNLYDISGSAHFINKCDNGIVIHR----NRDPE-AGPIDRVQVCVRKVRNK 516
V G+ P + D+ S D ++I+R NRD E AG D + + K R
Sbjct: 428 VESRGDDALPRISDLRESGSLEQDADMVMLINRPDSANRDHERAGEAD---IILAKHRGG 484
Query: 517 VVGTI 521
+GT+
Sbjct: 485 PIGTV 489
>gi|356668226|gb|AET35340.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668232|gb|AET35343.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|262375307|ref|ZP_06068540.1| replicative DNA helicase [Acinetobacter lwoffii SH145]
gi|262309561|gb|EEY90691.1| replicative DNA helicase [Acinetobacter lwoffii SH145]
Length = 480
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 31/280 (11%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 320
D FD+++ + G G++TG+ L N+ + G+L IV P+ GK+ + L+ +
Sbjct: 194 DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQSGDLIIVAARPSMGKTTFAMNLVES 252
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---- 376
+ + ++ SME A +L+ +++G R+ GK
Sbjct: 253 VLFNNNLPALVYSMEMPADSIAMRLI----------SSFG----RVHQGHLRSGKMDSDE 298
Query: 377 WLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
W T +++ + + +LP + + A + G G ++ Y +L +
Sbjct: 299 WSKVTSTIVHLQEKNLYIDDSSALPPTELRARARRIAKMHGGKLGCIMVDYLQLMKVPGM 358
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
+S++ +K A+ C V ++ R L N + P + D+ S D
Sbjct: 359 GDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDAD 418
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 419 LIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 458
>gi|356668264|gb|AET35359.1| DNA primase/helicase protein [uncultured virus]
Length = 230
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668260|gb|AET35357.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|297618091|ref|YP_003703250.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297145928|gb|ADI02685.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 692
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 39 TEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHG----HEVVIAFPYWRNGKLVN 94
+E + L P ++ Y A R I+ E L R R G E I P+ NG++V
Sbjct: 146 SEAAKMLSPDLEIVQEYLAARGINYELLTRYRWGYVPEGFVPGQEECIVVPFIVNGQVVG 205
Query: 95 CKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPD-GA 153
+ R + + K + V + L +EG +IVEGE D L +A + VP
Sbjct: 206 IRGRARDGRKGGAKGSRFVLWNLGALEGHDQAVIVEGESDALRTIQALESCGIDVPVLSV 265
Query: 154 PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERC 213
P + ++ E Q YL + QA DP + +G RC
Sbjct: 266 PGATFRREWEREFQGIHTVYL------IPQAD--------DPSWNNFVANAVKVLGDYRC 311
Query: 214 WRVRWPKK 221
V+ P K
Sbjct: 312 VVVKLPWK 319
>gi|356668230|gb|AET35342.1| DNA primase/helicase protein [uncultured virus]
Length = 234
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668202|gb|AET35328.1| DNA primase/helicase protein [uncultured virus]
Length = 239
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|304312029|ref|YP_003811627.1| Replicative DNA helicase [gamma proteobacterium HdN1]
gi|301797762|emb|CBL45984.1| Replicative DNA helicase [gamma proteobacterium HdN1]
Length = 464
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 31/281 (11%)
Query: 260 FRDYFDEIDAYYHRTSGDE--FGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDA 316
+D + ID + S DE G++TG+ L+ + + L P +L IV P+ GK+ +
Sbjct: 180 LKDTVNRIDKLF---SSDEAITGVATGFTDLDNMTSGLQPADLVIVAARPSMGKTTFAMN 236
Query: 317 LICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE------RMTVEE 370
L N+ +G ++ SME ++L + G E V
Sbjct: 237 LSENVLIRSGKPVLVFSMEMPAESIVMRMLSSLGRIDQTRVRSGKLEEDDWPRFNSAVSM 296
Query: 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
+ K ++ ++ L E + A+ V HG L++ Y +L + P ++
Sbjct: 297 LAEQKLFIDDSAGLSPSE---------LRARARRVVRDHGPLALIMVDYLQL-MKVPGAE 346
Query: 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNL----YDISGSAHFINKC 486
+S++ +K A+ C V ++ QL+ + + PN D+ S
Sbjct: 347 NRVSEISEISRSLKALAKEMDCPVVALS---QLNRGLEQRPNKRPINSDLRESGAIEQDA 403
Query: 487 DNGIVIHRNRDPEAGPIDR--VQVCVRKVRNKVVGTIGEAF 525
D + I+R+ G D+ ++ + K RN +GT+ AF
Sbjct: 404 DIIMFIYRDEVYNEGSDDKGIAEIIIGKQRNGPIGTVRLAF 444
>gi|356668250|gb|AET35352.1| DNA primase/helicase protein [uncultured virus]
Length = 229
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668204|gb|AET35329.1| DNA primase/helicase protein [uncultured virus]
Length = 248
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668228|gb|AET35341.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668242|gb|AET35348.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|453042357|gb|EME90102.1| hypothetical protein H123_30953 [Pseudomonas aeruginosa PA21_ST175]
Length = 463
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 104/252 (41%), Gaps = 29/252 (11%)
Query: 282 STGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSMEN 336
TG L++L + P ++T++ G+P SGK+ L I +H AG +++ S+E
Sbjct: 183 GTGLVDLDKLVRGIRPRKITVIAGLPGSGKT----TLALQIAQHNACEAGEPWLVFSLEM 238
Query: 337 KVREHARKLLEKHIKKPFFEANYGG-SAERMTVEEFEQGKAWLSNTFSLIRCENDSL--- 392
E + + A+ GG +R+ + W T ++ + + L
Sbjct: 239 PEEELGVRAI----------ASLGGVDLKRLDDPQQLGDDDWPRITSAVAKAKGAPLFIC 288
Query: 393 --PSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 448
P++ + +A+ HG+ G+V+D Y L +T +E V + + R A+
Sbjct: 289 DDPNVTASQIRSIARRVKREHGLAGIVVD-YLGLIPPEAKGRTRSEEVGRTNKALLRLAK 347
Query: 449 HHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQ 507
V +A R G+ P D+ S +++HR+ D EAG +
Sbjct: 348 ELGVPVIELAQLNRDSTKRPGKRPQSSDLRDSGEIEADASCILMVHRDMDSEAGQNGITE 407
Query: 508 VCVRKVRNKVVG 519
+ + K R+ G
Sbjct: 408 ILMTKCRHAPPG 419
>gi|356668236|gb|AET35345.1| DNA primase/helicase protein [uncultured virus]
Length = 227
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|172041661|ref|YP_001801375.1| replicative DNA helicase [Corynebacterium urealyticum DSM 7109]
gi|171852965|emb|CAQ05941.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 506
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 127/305 (41%), Gaps = 38/305 (12%)
Query: 242 LKEVVENA--ELYPIMGLFNFRDY----------FDEIDAYYHRTSGDEFGISTGWRALN 289
++ VV+NA E++ + DY DEID + G GI+TG++ L+
Sbjct: 198 VESVVDNAQQEMFALTNSATSEDYEVFERLLDPTLDEIDELESQ-GGTAKGIATGFQDLD 256
Query: 290 ELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+L N L G++ IV P GKS + + + VL S+E E ++L
Sbjct: 257 DLTNGLHGGQMIIVAARPGVGKSTLALDFMRSASIRQNKASVLFSLEMSKSEVMMRILSA 316
Query: 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR 408
+ A GG E E + + + I D P++ + AKA L+
Sbjct: 317 E-AEVHLSAMRGGKMEEDDWERLTRRIGEIDKSPIFI----DDSPNLTMMEIRAKARRLK 371
Query: 409 --HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNW 466
H + GL++ Y +L ++ + VS+ +K A+ V VA QL+
Sbjct: 372 QQHDI-GLIVVDYLQLMSSGKKVESRQQEVSEFSRQLKLLAKE--VDVPLVAI-SQLNRG 427
Query: 467 V---GEP--PNLYDISGSAHFINKCDNGIVIHR----NRDPE-AGPIDRVQVCVRKVRNK 516
V G+ P + D+ S D ++I+R NRD E AG D + + K R
Sbjct: 428 VESRGDDALPRISDLRESGSLEQDADMVMLINRPDSANRDHERAGEAD---IILAKHRGG 484
Query: 517 VVGTI 521
+GT+
Sbjct: 485 PIGTV 489
>gi|356668256|gb|AET35355.1| DNA primase/helicase protein [uncultured virus]
Length = 244
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ A+E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAAKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++ GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLAAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|325066289|ref|ZP_08124962.1| replicative DNA helicase [Actinomyces oris K20]
gi|343523275|ref|ZP_08760237.1| replicative DNA helicase [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343400431|gb|EGV12949.1| replicative DNA helicase [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 474
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 266 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 324
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRDNGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRILAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 385 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441
I N ++P I+ +KA ++ H + +VID + + V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGKRVESRQQE-VSEFSR 367
Query: 442 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 496
+K A+ V VA R G P + D+ S D +++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIVLLHRPEYYNN 427
Query: 497 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ G D + V K RN TI AF
Sbjct: 428 EERPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|238925602|ref|YP_002939119.1| replicative DNA helicase [Eubacterium rectale ATCC 33656]
gi|238877278|gb|ACR76985.1| replicative DNA helicase [Eubacterium rectale ATCC 33656]
Length = 434
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 108/263 (41%), Gaps = 23/263 (8%)
Query: 276 GDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC-- 332
G GI TG+ L+ + P +L +V P+ GK+ A + NI +H + LC
Sbjct: 172 GTVTGIPTGFIDLDYRTAGLQPSDLVLVAARPSMGKT----AFVLNIAQHVAFHAHLCTA 227
Query: 333 --SMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390
S+E + +L K +A G+ E+ +G + ++ +I D
Sbjct: 228 IFSLEMSKEQLVNRLFSLE-SKVDAQALRTGNLSDADWEKLVEGAGIIGDSELII----D 282
Query: 391 SLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 448
P SI + + L H ++ ++ID + S++ + +S + +K A+
Sbjct: 283 DTPGISISELRSKCRKYKLEHDLKLIIIDYLQLMTGSGRGSESRQQEISDISRSLKALAR 342
Query: 449 HHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPI 503
+ V ++ R + P L D+ S D + I+R N+D E I
Sbjct: 343 ELSVPVVALSQLSRAVEQRPDHRPMLSDLRESGAIEQDADVVMFIYRDDYYNKDTELKGI 402
Query: 504 DRVQVCVRKVRNKVVGTIGEAFL 526
++ + K RN +GT+ A+L
Sbjct: 403 S--EIIIAKQRNGPIGTVNLAWL 423
>gi|356668200|gb|AET35327.1| DNA primase/helicase protein [uncultured virus]
Length = 233
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGVDLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|222151461|ref|YP_002560617.1| hypothetical protein MCCL_1214 [Macrococcus caseolyticus JCSC5402]
gi|222120586|dbj|BAH17921.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 583
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 65/159 (40%), Gaps = 28/159 (17%)
Query: 113 VFYGLD----DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168
V Y +D I + ++I++EG MD L + EAG LN ++ A S
Sbjct: 241 VLYHIDVARKPIRNQDEVILLEGFMDVLKLNEAGILNAIATMGTALSR------------ 288
Query: 169 TKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFK 228
+++ K K AS I L DGD G ++ +++ +E P K
Sbjct: 289 ---EHILQLK---KLASNITLMYDGDRAGIEATLKIGKQLNQEGMNVFVVPMKKGY---- 338
Query: 229 DANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEI 267
D +E++ LG + +L + F R Y DEI
Sbjct: 339 DPDEMITELGTDKFLSYFNHNKLTYVS--FYMRHYLDEI 375
>gi|326772811|ref|ZP_08232095.1| replicative DNA helicase [Actinomyces viscosus C505]
gi|326637443|gb|EGE38345.1| replicative DNA helicase [Actinomyces viscosus C505]
Length = 474
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 104/269 (38%), Gaps = 18/269 (6%)
Query: 266 EIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 324
EI+A +R +G G+ TG+ L+EL L PG++ IV P GKS + + H
Sbjct: 194 EIEAAQNRDNGALTGVPTGFIELDELTGGLHPGQMIIVAARPAMGKSTLAVDFCRSASIH 253
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
G S+E E ++L + E + +SN
Sbjct: 254 HGITSCYFSLEMGRMELMMRILAAESSVDMNKLRGSRQMEDRDWTDVAVAYNPVSNAPLF 313
Query: 385 I-RCENDSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441
I N ++P I+ +KA ++ H + +VID + + V + E VS+
Sbjct: 314 IDDSPNLTMPEIR-----SKALRMKQQHNLGLMVIDYLQLMSSGKRVESRQQE-VSEFSR 367
Query: 442 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NR 496
+K A+ V VA R G P + D+ S D +++HR N
Sbjct: 368 SLKLLAKELEIPVIAVAQLNRGPEQRTGNKPQMSDLRESGSLEQDADIIVLLHRPEYYNN 427
Query: 497 DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ G D + V K RN TI AF
Sbjct: 428 EERPGEAD---IIVAKHRNGQTRTIPVAF 453
>gi|366162135|ref|ZP_09461890.1| DNA primase [Acetivibrio cellulolyticus CD2]
Length = 595
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 55/130 (42%), Gaps = 26/130 (20%)
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
GE II+VEG MD +S+ + G +N V+ S +E Q ++
Sbjct: 255 GEKRIIVVEGYMDVISLYQFGIINTVA---------SLGTALTESQ---------GRILK 296
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERC--WRVRWPKKNDVDHFKDANEVLMYLGP 239
K A II++ D D GQA + C + PK D D F AN G
Sbjct: 297 KYAEEIIISYDADTAGQAATMRGLNLLDDIGCNVKVLLIPKGKDPDEFIKAN------GA 350
Query: 240 GALKEVVENA 249
A K++V+NA
Sbjct: 351 DAFKKLVDNA 360
>gi|407009761|gb|EKE24836.1| hypothetical protein ACD_6C00024G0001 [uncultured bacterium]
Length = 480
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 115/280 (41%), Gaps = 31/280 (11%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 320
D FD+++ + G G++TG+ L N+ + G+L IV P+ GK+ + L+ +
Sbjct: 194 DVFDKLNEL-SQMEGSITGLTTGFVELDNKTSGMQSGDLIIVAARPSMGKTTFAMNLVES 252
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA---- 376
+ + ++ SME A +L+ +++G R+ GK
Sbjct: 253 VLFNNNLPALVYSMEMPADSIAMRLI----------SSFG----RVHQGHLRSGKMDSDE 298
Query: 377 WLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428
W T +++ + + +LP + + A + G G ++ Y +L +
Sbjct: 299 WSKVTSTIVHLQEKNLYIDDSSALPPTELRSRARRIAKMHGGKLGCIMVDYLQLMKVPGM 358
Query: 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCD 487
+S++ +K A+ C V ++ R L N + P + D+ S D
Sbjct: 359 GDNRVGEISEISRSLKALAKEMQCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDAD 418
Query: 488 NGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
+ I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 419 LIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 458
>gi|406911249|gb|EKD51085.1| hypothetical protein ACD_62C00350G0013 [uncultured bacterium]
Length = 487
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 115/277 (41%), Gaps = 20/277 (7%)
Query: 261 RDYFDEIDAYYHRTSGDEFGISTGWRALNELY-NVLPGELTIVTGVPNSGKSEWIDALIC 319
+D + +I+ + G G++TG+R L+ L +L IV G P+ GK+ + ++
Sbjct: 181 KDTYKQIEHLFEH-KGHITGLATGFRELDNLTAGFQKSDLIIVAGRPSMGKTAFAMNVVE 239
Query: 320 NINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAW 377
N K + S+E +LL H + +A+ G+ E +
Sbjct: 240 NACRLNNAKVAVYSLEMSKESLMMRLLTSHAR---IDASRVRTGNLEEADWPKLLAAAED 296
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG--LVIDPYNELDHQRPVSQTETEY 435
LSN I D P+ + AKA L V G L++ Y +L Q+ +
Sbjct: 297 LSNYGIYI----DDQPAQSTLEVRAKARHLSKTVGGLDLILIDYLQLMQASGNHQSREQE 352
Query: 436 VSQMLTMVKRFAQHHACHVWFVAHP---RQLHNWVGEPPNLYDISGSAHFINKCDNGIVI 492
+S++ +K A+ HV VA R L + + P + D+ S D +
Sbjct: 353 ISEISRSLKALAKD--LHVPVVAISQLNRSLESRQNKRPMMSDLRESGAIEQDADLIAFV 410
Query: 493 HRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS 527
+R+ +P++ +V V K RN +GT AF++
Sbjct: 411 YRDEVYNPDSPDKGIAEVIVGKQRNGAIGTTRLAFIN 447
>gi|356668248|gb|AET35351.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGARSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|356668220|gb|AET35337.1| DNA primase/helicase protein [uncultured virus]
Length = 247
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFGKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|145588611|ref|YP_001155208.1| DnaB domain-containing protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047017|gb|ABP33644.1| DnaB domain protein helicase, C-terminal domain protein
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 831
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 260 FRDYFDEIDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDAL 317
R ID Y+R G + GI+TG+ L++ + L G+L IV G P+ GK++ +DA
Sbjct: 186 LRTVVARIDELYNRQGGSDITGIATGFIDLDKQTSGLQKGDLVIVAGRPSMGKAQPLDAK 245
Query: 318 ICNINEHAGWKFV 330
+ ++ GWK +
Sbjct: 246 VKTVD---GWKLM 255
>gi|356668212|gb|AET35333.1| DNA primase/helicase protein [uncultured virus]
Length = 229
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|33601193|ref|NP_888753.1| hypothetical protein BB2209 [Bordetella bronchiseptica RB50]
gi|33602485|ref|NP_890045.1| hypothetical protein BB3510 [Bordetella bronchiseptica RB50]
gi|427818127|ref|ZP_18985190.1| phage-related hypothetical protein [Bordetella bronchiseptica D445]
gi|33575628|emb|CAE32706.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
gi|33576924|emb|CAE34004.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
gi|410569127|emb|CCN17212.1| phage-related hypothetical protein [Bordetella bronchiseptica D445]
Length = 313
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 20/225 (8%)
Query: 276 GDEF-GISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334
GD+ G W ++L PGE+T+ G+ GKSE + C G + + S
Sbjct: 42 GDQITGAKLPWSKTHDLLRFRPGEVTLWQGINGHGKSELL-GQACIGFATQGERVCIASF 100
Query: 335 ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPS 394
E K + L++ +++ A G V+ ++ W + L + P+
Sbjct: 101 EMK----PQATLKRMLRQTAMNARPG-------VQAVDRLIDWSRDRLWLYDQQGTVTPA 149
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
+ + + + R VR +VID + + ++V + T+ + H+
Sbjct: 150 MLYA--VIRYCADRLKVRHMVIDSLMKCVRGEDDYNGQKDFVDMLCTLARDLRM----HI 203
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499
V H ++ N + P + GS +++ D + + RN+ E
Sbjct: 204 HLVHHAKKGEN-EDQVPGKFSAKGSGAIVDQVDQMLTVWRNKKKE 247
>gi|326790056|ref|YP_004307877.1| helicase DnaB [Clostridium lentocellum DSM 5427]
gi|326540820|gb|ADZ82679.1| DnaB domain protein helicase domain protein [Clostridium
lentocellum DSM 5427]
Length = 514
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 97/249 (38%), Gaps = 40/249 (16%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALIC 319
R YF +ID +T G E G L ++TG +GKSE+ L
Sbjct: 217 IRKYFTQIDMIDGKTGGLE-----------------SGGLWLITGHTGNGKSEFAMQLSL 259
Query: 320 NINEHAGWKFVLCSMENKVREHAR---KLLEKH--IKKPFFEANYGGSAE------RMTV 368
++ + G F E K R ++ KL ++ IK P YGG +T
Sbjct: 260 SVVQQDGKVFYYAGEETKERFLSKLELKLADQKDIIKTP--RKLYGGRYSAFDFDYSVTY 317
Query: 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD---HQ 425
E Q K WL N + + + + V+++ + GV +D L
Sbjct: 318 ETDHQIKKWLKNKYFIFDGQFKKNNLVDSVIEMLEGMHKEKGVTVFFLDNLMTLTCEIET 377
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 485
+ ++ +TE + ++ +F +++ V VAHP + + D+SGS + +N
Sbjct: 378 QKLNSIQTELTNALV----QFCKNYNVTVVLVAHPNKSSELDIQNK---DVSGSFNVVNL 430
Query: 486 CDNGIVIHR 494
I + R
Sbjct: 431 ASVVITVRR 439
>gi|441463250|gb|AGC35532.1| putative DNA primase/helicase protein [Rhizobium phage RHEph01]
Length = 489
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 109/498 (21%), Positives = 182/498 (36%), Gaps = 53/498 (10%)
Query: 49 GNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRN-GKLVNCKYRDFNKKFWQE 107
G E RA ++R I+ ET R+ ++V PY+ + G L K R +K F
Sbjct: 8 GGEYRA-LSKRGITEETCRKFGYQIGHFKDQLVHIAPYFDDEGNLTAQKIRFADKTFTVT 66
Query: 108 KDTEKVFYGLDDI--EGESDIIIVEGEMDKLSMEE--AGFLNCVSVPDGAPSSVSKKNVP 163
+ + ++ G ++I EGE+D +S+ + VS+ +GA S+ +
Sbjct: 67 GNMKPALLFGQNLWSGGGRKVVITEGEIDAMSVSQVQGNKWPVVSIQNGAQSAKKALSAA 126
Query: 164 SEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKND 223
E +L ++L D D PG+ A A +C R P
Sbjct: 127 LE--------------WLTTFEEVVLMFDMDEPGREAAAACAALFPPGKCKIARLPD--- 169
Query: 224 VDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST 283
KD N +LM + + A+ Y G+ +F+D I R E G+
Sbjct: 170 ----KDPNALLMAGKGDEIITAIWQAQTYRPDGVVSFKD----IKEAARRPI--EMGLRW 219
Query: 284 GWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342
L +L Y GE+ GK++++ I G K + +E E A
Sbjct: 220 FCERLTKLTYGRRFGEVYAFGAGTGIGKTDFLTQQITFDVTELGQKVGVFFLEQMPTETA 279
Query: 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA 402
++L K K+ F + G T E ++ L DS + +W +
Sbjct: 280 KRLAGKFAKRRFHIPDDG-----WTDAELDEALNKLDQDMLFF---YDSFGATEWSVIRE 331
Query: 403 KAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH- 459
L H GV+ ID L E + + Q++ + A+ + V+H
Sbjct: 332 TIRYLAHSEGVKVFYIDHLTAL---AAAEDDERKALEQIMAEMAALAKELGIIIHLVSHL 388
Query: 460 --PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKV 517
P + G + GS C + R++ E + R R ++++
Sbjct: 389 ATPEGKPHEEGGRVMIRHFKGSRAIGFWCHYMFGLERDQQHEDERL-RAVTTFRVLKDRY 447
Query: 518 VG-TIGEA-FLSYNRVTG 533
G GE +L Y R TG
Sbjct: 448 TGQATGEVIYLGYERETG 465
>gi|335040362|ref|ZP_08533492.1| replicative DNA helicase [Caldalkalibacillus thermarum TA2.A1]
gi|334179749|gb|EGL82384.1| replicative DNA helicase [Caldalkalibacillus thermarum TA2.A1]
Length = 450
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 112/273 (41%), Gaps = 28/273 (10%)
Query: 272 HRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330
H T D GI +G+R L+ L + +L IV P+ GK+ + + N+ AG
Sbjct: 177 HNTKSDLTGIPSGYRDLDRLTSGFQRSDLVIVAARPSVGKTAFALNIAQNVAVRAGETVA 236
Query: 331 LCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN- 389
+ S+E + +++L E N A RM F++ + W T ++
Sbjct: 237 IFSLEMSASQLVQRML-------CAEGNI--DANRMRTGAFKE-EDWEKLTMAIASLSKA 286
Query: 390 ----DSLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNEL--DHQRPVSQTETEYVSQMLT 441
D P I AK L+ G+ G+++ Y +L + R Q E +S+ L
Sbjct: 287 KIYIDDTPGINVNQIRAKCRRLKAEEGL-GIILIDYLQLIQGNNRESRQQEISAISRSL- 344
Query: 442 MVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DP 498
K A+ C V ++ R + + P L D+ S D ++R D
Sbjct: 345 --KAMARELDCTVIALSQLSRAVEQRQDKRPMLSDLRESGSIEQDADIVAFLYREDYYDQ 402
Query: 499 EAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
+ + +++ + K RN VG + AFL YN+
Sbjct: 403 DTENKNIIEIIIAKQRNGPVGKVELAFLKEYNK 435
>gi|373855219|ref|ZP_09597965.1| replicative DNA helicase [Bacillus sp. 1NLA3E]
gi|372454288|gb|EHP27753.1| replicative DNA helicase [Bacillus sp. 1NLA3E]
Length = 454
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 28/322 (8%)
Query: 225 DHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFG 280
D + +EV LG A K ++E A+ N +D +D I+ +R GD G
Sbjct: 128 DGYSREDEVTTLLGE-AEKSILEVAQRKNAGAFHNIKDVLVRTYDNIELLNNR-KGDVTG 185
Query: 281 ISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
I+TG+ L+ + +L IV P+ GK+ + + N+ G + S+E
Sbjct: 186 IATGFSELDRMTAGFQRNDLIIVGARPSVGKTAFALNIAQNVATKTGENVAIFSLEMGAE 245
Query: 340 EHARKLL--EKHIKKPFFEANYGGSAERMTVEE---FEQGKAWLSNTFSLIRCENDSLPS 394
+ ++L E +I +T E+ LSN I D P
Sbjct: 246 QLVMRMLCAEGNINAQNLRTGA------LTDEDWGKLTMAMGSLSNAGIFI----DDTPG 295
Query: 395 IKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452
++ +K L+ HG+ ++ID + + + VS++ +K+ A+
Sbjct: 296 VRIGEIRSKCRRLKQEHGLGMVLIDYLQLIQGDGRSGENRQQEVSEISRTLKQLARELEV 355
Query: 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVC 509
V ++ R + + P + DI S D ++R+ D E + +++
Sbjct: 356 PVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEII 415
Query: 510 VRKVRNKVVGTIGEAFLS-YNR 530
+ K RN VGT+ AF+ YN+
Sbjct: 416 IAKQRNGPVGTVQLAFVKEYNK 437
>gi|321474533|gb|EFX85498.1| hypothetical protein DAPPUDRAFT_314156 [Daphnia pulex]
Length = 688
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 139/377 (36%), Gaps = 76/377 (20%)
Query: 146 CVSVPDGA-PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 204
C++VP PS +S N+P +L+ +I L G A
Sbjct: 306 CLAVPAVCLPSGIS--NLP-----------LATMAFLESFRKITLWLGHGVQGSDCARAF 352
Query: 205 ARRVGRERCWRVRWPKKNDVDHF-----KDANEVLMYLGPGALKEVVENAELYPIMGLFN 259
AR++G +RC +R ++ K+ +VL P K V + L
Sbjct: 353 ARKLGEKRCHLIRSSEETPSALLCRMKGKNVAQVLKAALPMTHKSVTTFSSLR------- 405
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWID 315
++ ++EI + SG WR L ++L G ELT+ TG +GK+ ++
Sbjct: 406 -KEVYEEI-TQSSKVSG------VRWRRFPILTDLLKGHRRGELTVFTGPTGAGKTTFL- 456
Query: 316 ALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375
+ + LC + + + ++ + K + G E T E
Sbjct: 457 ---------SEYSLDLCGQDVRTLWGSFEIRNVRLAKMMLQQFSGLLLESETRE------ 501
Query: 376 AWLSNTFSLIRCENDSLP----------SIKWVLDLAKAAVLRHGVRGLVIDPYNEL--D 423
TF ++ + + LP ++ VL+ AV + + +VID +
Sbjct: 502 -----TFDIVADKFEKLPMYYLAFHGQQNVTSVLEAMSHAVYVYDISHVVIDNLQFMMGT 556
Query: 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFI 483
+S Q++ +RFA + HV V HPR+ E + I G A
Sbjct: 557 SNENLSMDRYHRQDQIIGSFRRFATDNNVHVTLVIHPRK---EAMEELSTSSIFGGAKAS 613
Query: 484 NKCDNGIVIH--RNRDP 498
+ DN +++ R DP
Sbjct: 614 QEADNILILQDKRTNDP 630
>gi|294649986|ref|ZP_06727374.1| replicative DNA helicase [Acinetobacter haemolyticus ATCC 19194]
gi|292824079|gb|EFF82894.1| replicative DNA helicase [Acinetobacter haemolyticus ATCC 19194]
Length = 481
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFVELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|226952673|ref|ZP_03823137.1| replicative DNA helicase; chromosome replication, chain elongation
[Acinetobacter sp. ATCC 27244]
gi|226836579|gb|EEH68962.1| replicative DNA helicase; chromosome replication, chain elongation
[Acinetobacter sp. ATCC 27244]
Length = 481
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 112/264 (42%), Gaps = 20/264 (7%)
Query: 273 RTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331
+ G+ G++TG+ L N+ + G+L IV P+ GK+ + L+ ++ ++ ++
Sbjct: 205 KLDGNITGLTTGFVELDNKTSGMQAGDLIIVAARPSMGKTTFAMNLVESVLQYNRLPALV 264
Query: 332 CSMENKVREHARKLL-------EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSL 384
SME A +L+ + H++ +A+ T+ + ++ ++ ++
Sbjct: 265 FSMEMPADSIAMRLISAMGKVHQGHLRSGNLDADEWTKVTG-TILQLQEMHLYIDDS--- 320
Query: 385 IRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444
+LP + + A + G G ++ Y +L + +S++ +K
Sbjct: 321 -----SALPPTELRARARRIAKMHDGKIGCIMVDYLQLMKVPGMGDNRVGEISEISRSLK 375
Query: 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAG 501
A+ C V ++ R L N + P + D+ S D + I+R+ + E+
Sbjct: 376 ALAKEMNCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMFIYRDEVYNKESK 435
Query: 502 PIDRVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +G++ AF
Sbjct: 436 EAGTAEIIIGKQRNGPIGSVRLAF 459
>gi|410679494|ref|YP_006931896.1| DNA primase [Borrelia afzelii HLJ01]
gi|408536882|gb|AFU75013.1| DNA primase [Borrelia afzelii HLJ01]
Length = 592
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 20 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 73
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 74 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 116
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 177 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 231
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 232 EVLMYLGPGALKEVVEN 248
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|145514790|ref|XP_001443300.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124410678|emb|CAK75903.1| unnamed protein product [Paramecium tetraurelia]
Length = 416
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 23/166 (13%)
Query: 91 KLVNCKYRDFNK--KFWQE---KDTEKVFYGLDDIEGE-SDIIIVEGEMDKLSMEEAGFL 144
+LV+CK R K K+ Q+ K+ K +GL+ + + II+ EGE D ++ + +
Sbjct: 263 ELVSCKLRGMGKENKYIQKIEPKNAMKGIFGLNLLTKDVKQIILTEGEFDAMAAYQMTGI 322
Query: 145 NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEEL 204
+S+P G + P+ +L K+ + I++ D D G+ + ++
Sbjct: 323 PSISLPYGIA------HFPN--------FLLEWINEYKELNNILVWVDDDDFGRVNSHKI 368
Query: 205 ARRVGRERCWRVRWPKKNDVDHF-KDANEVLMYLGPGALKEVVENA 249
A ++G + R+ P + D + KDAN+ L Y P ++E + +
Sbjct: 369 ATKIGHWKT-RIIQPSSVNADQYPKDANDCLRYY-PDRVQEYISKS 412
>gi|111115541|ref|YP_710159.1| DNA primase [Borrelia afzelii PKo]
gi|384207196|ref|YP_005592918.1| DNA primase [Borrelia afzelii PKo]
gi|110890815|gb|ABH01983.1| DNA primase [Borrelia afzelii PKo]
gi|342857080|gb|AEL69928.1| DNA primase [Borrelia afzelii PKo]
Length = 593
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 20 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 73
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 74 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 116
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 177 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 231
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 232 EVLMYLGPGALKEVVEN 248
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|216263403|ref|ZP_03435398.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
gi|215980247|gb|EEC21068.1| conserved hypothetical protein [Borrelia afzelii ACA-1]
Length = 593
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 55/257 (21%)
Query: 20 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 73
N+++ +L K + I + D EL L G EL + + S+E L+++ +
Sbjct: 132 NKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYSSEILKKSGLFS 191
Query: 74 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 116
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KINPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
LD+I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LDEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLV------------- 295
Query: 177 CKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDV-----DHFKDAN 231
+ + A II + DGD G + + +++ P +V D +D
Sbjct: 296 --LIQRYADEIIFSFDGDDAGLS---------ATLKAYQICLPFNINVSVVKMDFGRDPA 344
Query: 232 EVLMYLGPGALKEVVEN 248
+VL G +L+E++ N
Sbjct: 345 DVLKSEGESSLQEILNN 361
>gi|403053483|ref|ZP_10907967.1| replicative DNA helicase [Acinetobacter bereziniae LMG 1003]
gi|445414431|ref|ZP_21433955.1| replicative DNA helicase [Acinetobacter sp. WC-743]
gi|444764378|gb|ELW88692.1| replicative DNA helicase [Acinetobacter sp. WC-743]
Length = 481
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 67/343 (19%), Positives = 129/343 (37%), Gaps = 49/343 (14%)
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMY------------LGPGALKEVVENAELYPI 254
+VG E K DV D E ++ GP A+ VV
Sbjct: 142 KVGNEILQNAYDTKGRDVSEILDLAETNIFSIAEQHNNNAKAQGPKAITSVVA------- 194
Query: 255 MGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEW 313
D FD+++ + G+ G++TG+ L N+ + G++ IV P+ GK+ +
Sbjct: 195 -------DVFDKLNEL-SQLDGNITGLTTGFMELDNKTSGMQAGDMIIVAARPSMGKTTF 246
Query: 314 IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373
L+ ++ + ++ SME A +L+ + YG +
Sbjct: 247 AMNLVESVLFNCDLPALVFSMEMPADSIAMRLI----------SAYGKVHQGHLRSGKLD 296
Query: 374 GKAWLSNTFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425
G W T ++++ + + +LP + + A G G ++ Y +L
Sbjct: 297 GDEWSKVTGTILQLQEKHLYIDDSSALPPTEVRARARRIAKQHGGKLGCIMIDYLQLMKV 356
Query: 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN 484
+ + ++ +K A+ C V ++ R L N + P + D+ S
Sbjct: 357 PGMGDNRVGEIGEISRSLKALAKEMMCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQ 416
Query: 485 KCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
D + I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 417 DADLIMFIYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|358012538|ref|ZP_09144348.1| replicative DNA helicase [Acinetobacter sp. P8-3-8]
Length = 481
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 112/276 (40%), Gaps = 23/276 (8%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRAL-NELYNVLPGELTIVTGVPNSGKSEWIDALICN 320
D FD+++ + G+ G++TG+ L N+ + G++ IV P+ GK+ + L+ +
Sbjct: 195 DVFDKLNEL-SQMEGNITGLTTGFMELDNKTSGMQAGDMIIVAARPSMGKTTFAMNLVES 253
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380
+ + ++ SME A +L+ + YG + G W
Sbjct: 254 VLFNCDLPALVFSMEMPADSIAMRLI----------SAYGKVHQGHLRSGKLDGDEWSKV 303
Query: 381 TFSLIRCE--------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432
T ++++ + + +LP + + A G G ++ Y +L +
Sbjct: 304 TGTILQLQEKHLYIDDSSALPPTELRARARRIAKQHGGKLGCIMVDYLQLMKVPGMGDNR 363
Query: 433 TEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIV 491
+ ++ +K A+ C V ++ R L N + P + D+ S D +
Sbjct: 364 VGEIGEISRSLKALAKEMMCPVIALSQLNRSLENRPNKRPVMSDLRESGAIEQDADLIMF 423
Query: 492 IHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
I+R+ + E+ ++ + K RN +GT+ AF
Sbjct: 424 IYRDEVYNKESKEAGTAEIIIGKQRNGPIGTVRLAF 459
>gi|281418679|ref|ZP_06249698.1| regulatory protein DeoR [Clostridium thermocellum JW20]
gi|281407763|gb|EFB38022.1| regulatory protein DeoR [Clostridium thermocellum JW20]
Length = 675
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 38 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 93
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECLVVPFRVRGKIR 196
Query: 94 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 152
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 153 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 212
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTVYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 213 CWRVRWP-KKNDV 224
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|456063731|ref|YP_007502701.1| DnaB domain-containing protein [beta proteobacterium CB]
gi|455441028|gb|AGG33966.1| DnaB domain-containing protein [beta proteobacterium CB]
Length = 831
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 267 IDAYYHRTSGDEF-GISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNINEH 324
ID Y+R G + GI+TG+ L++ + L G+L IV G P+ GK++ +DA + ++
Sbjct: 193 IDELYNRQGGSDITGIATGFIDLDKQTSGLQKGDLVIVAGRPSMGKAQPLDAKVKTVD-- 250
Query: 325 AGWKFV 330
GWK +
Sbjct: 251 -GWKLM 255
>gi|403389370|ref|ZP_10931427.1| replicative DNA helicase [Clostridium sp. JC122]
Length = 443
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 10/267 (3%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALICNIN 322
F+EI+ Y+ G+ G+ +G++ L++ + G++ ++ P+ GK+ + L
Sbjct: 168 FEEIERIYN-NKGETTGVPSGFKDLDDKTSGFQSGDMVLIAARPSMGKTTFALNLAQYAA 226
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTF 382
AG + S+E + A KLL + G E+ E + L++
Sbjct: 227 LRAGKSVAIFSLEMSKEQLAYKLLCAEANVDMLKLRTGNLDEK-DWENIARASGPLAD-- 283
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442
+ I ++ + SI + + + HG+ ++ID Y +L ++ + VS++
Sbjct: 284 AKIFIDDTAGISIMEMRSKCRRLKMEHGIDMILID-YLQL-MSGSGGESRQQEVSEISRS 341
Query: 443 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPE 499
+K A+ C V ++ R P L D+ S D + ++R+ D E
Sbjct: 342 IKAIAKELKCPVVALSQLSRAPEQRADHRPMLSDLRESGSIEQDADLVMFLYRDEYYDKE 401
Query: 500 AGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ + + K RN VGT+ A+L
Sbjct: 402 TEDKNIAECIIAKQRNGPVGTVKLAWL 428
>gi|256005292|ref|ZP_05430258.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
DSM 2360]
gi|385777857|ref|YP_005687022.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313]
gi|419723262|ref|ZP_14250395.1| regulatory protein DeoR [Clostridium thermocellum AD2]
gi|419727093|ref|ZP_14254099.1| regulatory protein DeoR [Clostridium thermocellum YS]
gi|255990728|gb|EEU00844.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum
DSM 2360]
gi|316939537|gb|ADU73571.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313]
gi|380769498|gb|EIC03412.1| regulatory protein DeoR [Clostridium thermocellum YS]
gi|380780727|gb|EIC10392.1| regulatory protein DeoR [Clostridium thermocellum AD2]
Length = 675
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 38 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 93
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECLVVPFRVRGKIR 196
Query: 94 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 152
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 153 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 212
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 213 CWRVRWP-KKNDV 224
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|356668218|gb|AET35336.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ +I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEEVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL ++T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELGVLTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|451945630|ref|YP_007469759.1| DNA primase [Desulfocapsa sulfexigens DSM 10523]
gi|451908512|gb|AGF80105.1| DNA primase [Desulfocapsa sulfexigens DSM 10523]
Length = 992
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 84 FPYWRNGKLVNCKYRDFNKK--FWQEKDTEK----VFYGLDDIEGESDIIIVEGEMDKLS 137
FP++ NG+ ++ +D KK +Q T++ FY D + ++I+VEGE D LS
Sbjct: 189 FPHFENGRALHFTIKDPEKKRPSYQLPATQRHKKWRFYNQDALFRYDELILVEGENDTLS 248
Query: 138 MEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLW 175
+ ++G + + G S K++ + + K+ YLW
Sbjct: 249 VLDSGVRQVIGMT-GQISEEQIKSLAAHCKSKKHLYLW 285
>gi|420143842|ref|ZP_14651335.1| DNA primase [Lactococcus garvieae IPLA 31405]
gi|391856231|gb|EIT66775.1| DNA primase [Lactococcus garvieae IPLA 31405]
Length = 628
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 68 RNRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDD----I 120
+NR+M + +GH V + W+ KY N + D Y LD I
Sbjct: 197 QNRIMFPLKNEYGHVVGFSGRKWQENDTSKAKY--INTSATKIFDKSYELYNLDRAKPVI 254
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
++ ++EG MD ++ +AG N V+ +++++K+V K
Sbjct: 255 SKTREVYLMEGFMDVIAAYKAGIFNVVAT---MGTALTEKHV---------------KRL 296
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
K A +L DGD GQ + +G E+ VR P+ D D + +
Sbjct: 297 KKIAKNYVLIYDGDQAGQNAIYKAIDLIGEEKTQIVRVPEGLDPDDYSKKYSL------E 350
Query: 241 ALKEVVENAELYPIMGLFNF 260
+L ++EN+ + P L ++
Sbjct: 351 SLAGLMENSRIQPTEFLIDY 370
>gi|386855013|ref|YP_006262753.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
gi|380002490|gb|AFD27678.1| hypothetical protein DGo_PB0409 [Deinococcus gobiensis I-0]
Length = 343
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 69 NRVMQKRHGHEV---VIAFPYWRNGKLVNCKYRDF-----NKKFWQEKDTEKVFYGLDDI 120
N + R H + ++ P W G L+ K R+ ++ T YGL ++
Sbjct: 165 NSTVLARRPHRIWEGMVTLPTWHQGALLALKGRNLLGKGEGREMRNLAGTGTAPYGLREL 224
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYL 174
++ VEGE D LS+ +A F VSV G P + K + +Y YL
Sbjct: 225 RDSHAVLAVEGETDTLSIWQA-FEGEVSV-VGIPGATHWKKLQHPALAGRYLYL 276
>gi|356668196|gb|AET35325.1| DNA primase/helicase protein [uncultured virus]
Length = 232
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 146 CVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
VS+P+GA S+ ++ K Q W L+ ++I+ D D G+ +E+
Sbjct: 13 VVSIPNGAKSA---------KKTFKAQLDW-----LETFEKVIVMFDMDERGREAVKEIE 58
Query: 206 RRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYF- 264
+ + + P KD NE L+ P A+ + + NA+ Y G+ N D +
Sbjct: 59 GILSPGKLYIANLP-------LKDPNECLLAGQPDAIVKAIWNAKEYKPDGIINGADLWE 111
Query: 265 ------DEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318
D++ Y + ++ G R GEL +T GK+ I +
Sbjct: 112 LLENEEDDVQNYPLPWDIEMNKMTLGLRK---------GELVALTAGTGVGKTTVIRQIA 162
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLL 346
N G K + +E VR A+ L+
Sbjct: 163 HNFGVTQGLKVGMMMLEENVRRTAKGLM 190
>gi|333367786|ref|ZP_08460022.1| replicative DNA helicase DnaB [Psychrobacter sp. 1501(2011)]
gi|332978371|gb|EGK15094.1| replicative DNA helicase DnaB [Psychrobacter sp. 1501(2011)]
Length = 479
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 21/275 (7%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICN 320
+ D++D + G G+ T + LN + + PG+L IV P+ GK+ + L
Sbjct: 190 NVIDQMDELKNNPDG-MIGLRTPFTELNNKTQGLQPGDLIIVAARPSMGKTTFAMNLAEG 248
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEK--HIKKPFF---EANYGGSAERMTVEEFEQGK 375
+ H ++ SME +LL I + + N A MT Q K
Sbjct: 249 VLFHENLPVIVFSMEMPAESIVMRLLSSWGQINQTSLRSAQMNEDEWARMMTAVAHLQDK 308
Query: 376 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435
L ++ +LP + + A G G+VI Y +L +S E
Sbjct: 309 -------HLYIDDSTALPPSEVRSRCRRIAKNHDGKIGMVIVDYLQLMKVPSLSGNRVEE 361
Query: 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
+S++ +K A+ C V ++ R L N + P + D+ S D I+R
Sbjct: 362 ISEISRSLKALARELNCPVIALSQLNRSLENRPNKRPIMSDLRESGAIEQDADLITFIYR 421
Query: 495 ----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
N + + + ++ + K RN +GT+ AF
Sbjct: 422 DEVYNENSDLKGV--AEIIIGKQRNGPIGTVRLAF 454
>gi|408790546|ref|ZP_11202164.1| DNA primase [Lactobacillus florum 2F]
gi|408520093|gb|EKK20187.1| DNA primase [Lactobacillus florum 2F]
Length = 609
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 115/294 (39%), Gaps = 66/294 (22%)
Query: 36 REITEDSLELEPLG-----NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAF------ 84
R+I+ + +E LG L+ +F E+ +TLR+ + + E+ F
Sbjct: 147 RQISAEMIETFQLGFAPSERVLQPFFKEQQTDYQTLRKTGLFIENQAGELTDRFVNRLMF 206
Query: 85 --------PYWRNGKLVNCKYRDFNKKFWQEKDTE-----KVFYGLD----DIEGESDII 127
P +G+L+ + + K+ +TE KV Y LD + +I
Sbjct: 207 PIRNPQGAPIGFSGRLL--QQNEQQPKYLNSPETELFNKRKVIYNLDLAKPAVRKTQRLI 264
Query: 128 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 187
+ EG MD +S +A N V+ S +EEQ +++ K S+I
Sbjct: 265 LFEGFMDVISAYQAEVFNGVA---------SMGTSLTEEQIYEFK---------KVTSQI 306
Query: 188 ILATDGDPPGQALAEELARRVGRERCWRV---RWPKKNDVDHFKDANEVLMYLGPGALKE 244
+ DGD PGQ + ++ + V + P D D F+ GP +E
Sbjct: 307 CVCYDGDQPGQKATNRAIDLLTQQDSFEVNVIQMPNGVDPDEFRRT------AGPKRFRE 360
Query: 245 VVENAELYPIMGLFNF-RDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG 297
V+ A+ + NF ++ F+ + D ++ +AL ++ N PG
Sbjct: 361 VISKAQEPALKFKLNFLKNQFN--------LNNDVDKLNYVNQALQQIANTKPG 406
>gi|83721400|ref|YP_441469.1| phage related protein [Burkholderia thailandensis E264]
gi|257139851|ref|ZP_05588113.1| phage related protein [Burkholderia thailandensis E264]
gi|83655225|gb|ABC39288.1| phage related protein [Burkholderia thailandensis E264]
Length = 342
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 30/272 (11%)
Query: 225 DHFKDANEVLMYLGPGALKE----VVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
D KDAN+ L+ GA +E ++ + L + +++ + A ++ S D
Sbjct: 4 DGAKDANDFLL---SGATQEDFQRCMDAGRTFDPDELKSISEFWSGVKALFYPASDDAHD 60
Query: 281 ISTGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339
+ +E + GE+T+ +G GKS ++ ++ + V VR
Sbjct: 61 PFLSFCGRSEPWFEFRQGEITVWSGYNGHGKSLLLNQVLLGLMNQGERACVFSGEMTPVR 120
Query: 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSIK 396
+ R + K + G +R T E + WL + +F+++ SI+
Sbjct: 121 QGKR--IAKQL----------GGLDRPTPEYLDAMAEWLRDRMWSFAVV-----GTASIE 163
Query: 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456
+L + A R+G+R VID + Q T M M+ +A+ + HV
Sbjct: 164 RLLTVFTYAYKRYGIRHCVIDSLMMTNVQSDGPGAITAQKDAM-RMLANWARANGTHVHL 222
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488
VAHPR+ + P D++G+ + DN
Sbjct: 223 VAHPRKSQD-EKHIPGKQDVAGAGVITDAADN 253
>gi|392411785|ref|YP_006448392.1| DNA primase [Desulfomonile tiedjei DSM 6799]
gi|390624921|gb|AFM26128.1| DNA primase [Desulfomonile tiedjei DSM 6799]
Length = 819
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 30/160 (18%)
Query: 96 KYRDFNKKFWQE--KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGA 153
++R +K W KDT+ V Y L +I + II+ EGE D S+ + L + P GA
Sbjct: 133 QFRTDSKDGWLPGLKDTQLVLYNLPEIIDANTIIMCEGERDCDSVTQQLGLTATTNPMGA 192
Query: 154 ---PSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV-- 208
VS+ + ++ L N +I+ +D D PG+ A E+A V
Sbjct: 193 GKWSKLVSEHRI--------HEPLKN--------KHVIVLSDNDRPGKQHATEVANSVIG 236
Query: 209 ----GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244
++ + WP D+ D ++V+ +LGP KE
Sbjct: 237 FAASVKKVDLKKIWP---DLPEKGDISDVIEFLGPDKAKE 273
>gi|260878763|ref|ZP_05891118.1| DNA primase/helicase [Vibrio parahaemolyticus AN-5034]
gi|308091265|gb|EFO40960.1| DNA primase/helicase [Vibrio parahaemolyticus AN-5034]
Length = 450
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 152/386 (39%), Gaps = 56/386 (14%)
Query: 85 PYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSME--EAG 142
P+ R +LV K R +KKF + G G +II EGE+D L++ ++
Sbjct: 15 PFTR--ELVAQKIRTEDKKFLVKGKLTGELIGSHLFSGGRKLIITEGEIDMLTVSQVQSN 72
Query: 143 FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202
VS+P+G +SV K + + + YL II+ D D G+ A
Sbjct: 73 KYPVVSLPNGI-NSVKKTIMKNLD-------------YLGNFEEIIICFDMDEVGREGAI 118
Query: 203 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRD 262
E A + + P KD NE+L+ L + NA+ + GL D
Sbjct: 119 EAAELLIDHNVKIMSLP-------LKDPNEMLLAGRTEELVNAIWNAQEHRPDGLLPVED 171
Query: 263 YFDEIDAYYHRTSG-----DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDAL 317
+ A G + +S+ R E++ + G TGV GK++++ A
Sbjct: 172 LVEA--ALKPLPKGLPWIYNGMNVSSNGRHFGEIHTIGAG-----TGV---GKTDFLCAQ 221
Query: 318 ICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS----AERMTVEEFEQ 373
H K L MEN E + L K K+ ++EA + A+R +++
Sbjct: 222 ADFDIRHLHQKVGLFFMENDPTEILQYLGGKADKRLYYEAGHPDQLDLEAQRKAYKKY-S 280
Query: 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433
G+ ++ + F L C+ + +K + + K G R ID L + E
Sbjct: 281 GRCFIYDNFGL--CDWQKV-KVKILYLIGK------GYRIFYIDHLTAL--ATGGEKDEK 329
Query: 434 EYVSQMLTMVKRFAQHHACHVWFVAH 459
+ + ++ + FA+ H V+H
Sbjct: 330 KELEDIMADIATFAKRHNVLFHLVSH 355
>gi|386810799|ref|ZP_10098025.1| conserved hypothetical protein [planctomycete KSU-1]
gi|386405523|dbj|GAB60906.1| conserved hypothetical protein [planctomycete KSU-1]
Length = 294
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 30/153 (19%)
Query: 54 AYFAERLISAETL-RRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK 112
A F + ++ + L + R+ R GH F + NGK V FW+ D
Sbjct: 102 AKFEYKDVNGQVLYTKERIEPGREGHSKEFIFKHLENGKWV----------FWRGCDP-- 149
Query: 113 VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172
V Y L ++ G I+VEGE +A L G P++ S +D Q
Sbjct: 150 VLYRLPELVGSKACIVVEGEA------KADLLTSW----GLPATCLDSGASSPIRDEHVQ 199
Query: 173 YLWNCKMYLKQASRIILATDGDPPGQALAEELA 205
L K +II+ D D PG+A A ++A
Sbjct: 200 ILSGMK-------KIIILPDNDKPGKAYAIKIA 225
>gi|170699105|ref|ZP_02890160.1| phage-related hypothetical protein [Burkholderia ambifaria
IOP40-10]
gi|170135980|gb|EDT04253.1| phage-related hypothetical protein [Burkholderia ambifaria
IOP40-10]
Length = 321
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 95/246 (38%), Gaps = 33/246 (13%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
++ +++ + H G ++ W ++ + GE+T+ GV GKS A++ +
Sbjct: 30 EFIEDLVEHVHSPKSVAIGTASPWASVGDSLRFREGEVTLWGGVNGHGKS----AVLGEV 85
Query: 322 NEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
HA G + + SME + +L + ++ R T E WL
Sbjct: 86 MLHAMSTGDRACIASMEMRPIATMERLTRQAAAAAVPAPDFIRGFGRWTDERL-----WL 140
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
+ +L +A+ GV +VID + + +V
Sbjct: 141 YAHVGTVERTR--------MLAVARYCRKELGVHHVVIDSLLKCGIAPDDYAGQKNFVDA 192
Query: 439 MLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIHR 494
+ ++ A+ H+ V H R+ GE P+ +D+ G+ + DN +++HR
Sbjct: 193 LCSL----ARDTGVHIHLVHHARK-----GERESVVPDKFDMKGAGEITDLVDNVLIVHR 243
Query: 495 NRDPEA 500
N+ EA
Sbjct: 244 NKSKEA 249
>gi|395226893|ref|ZP_10405301.1| DNA primase, catalytic core [Thiovulum sp. ES]
gi|394444803|gb|EJF05886.1| DNA primase, catalytic core [Thiovulum sp. ES]
Length = 338
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 40/207 (19%)
Query: 16 LVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKR 75
LV +NR LK S+ +R + E L P + Y E+ S E + + +
Sbjct: 87 LVKDNRVLDYLK--SRGLEVRSVAEWELGFSPDKYGVIRYLIEKGFSMEEILSSGIAVNT 144
Query: 76 HGHEVV------IAFPYWR-NGKLVNCKYRDFNK---KFWQEKDTE-----KVFYGLDDI 120
G EV + FP G++V+ R F + K+ DT+ +V +GLD
Sbjct: 145 -GREVFDRFYGRVIFPIRDVTGRIVSFSGRIFGEGEPKYLNGPDTKVFKKSEVLFGLDKA 203
Query: 121 EG----ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
+ E + IVEG MD + M +AG+ N V+V +S+S+ +++
Sbjct: 204 KSYARKEGFLYIVEGYMDAILMHQAGYKNTVAV---MGTSLSE------------EHIKG 248
Query: 177 CKMYLKQASRIILATDGDPPGQALAEE 203
++K+A IL DGD G AE+
Sbjct: 249 IYRFVKKA---ILIFDGDEAGLRSAEK 272
>gi|254428918|ref|ZP_05042625.1| replicative DNA helicase [Alcanivorax sp. DG881]
gi|196195087|gb|EDX90046.1| replicative DNA helicase [Alcanivorax sp. DG881]
Length = 464
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 12/272 (4%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
+ D ID Y +T G+++G+ L+++ L P ++ +V G P+ GK+ + L
Sbjct: 176 LKKAVDRIDELY-KTKSSLTGLTSGFEELDKMTGGLQPADMIVVAGRPSMGKTTFAMNLC 234
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
N+ + ++ SME ++L + + A G+ E+ L
Sbjct: 235 ENVAIKSNKPVLVFSMEMPAESIVMRML-SSLGRINQGAIRSGNLEKDDWPRITSAIHML 293
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
S I + +L ++ + A G GL++ Y +L Q P + +S+
Sbjct: 294 SEQRFFID-DTPALSPLEMRARARRVARECGGELGLIMVDYLQL-MQVPGVENRVNEISE 351
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 494
+ +K A+ C V ++ R L + P + D+ S D + ++R
Sbjct: 352 ISRSLKGIAKELNCPVLALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFLYRDEV 411
Query: 495 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
N+D + ++ + K RN +GT+ AF
Sbjct: 412 YNKDSNERGV--AEIIIGKQRNGPIGTVRLAF 441
>gi|110835048|ref|YP_693907.1| replicative DNA helicase [Alcanivorax borkumensis SK2]
gi|110648159|emb|CAL17635.1| Replicative DNA helicase [Alcanivorax borkumensis SK2]
Length = 464
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 12/272 (4%)
Query: 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEWIDALI 318
+ D ID Y +T G+++G+ L+++ L P ++ +V G P+ GK+ + L
Sbjct: 176 LKKAVDRIDELY-KTKSSLTGLTSGFEELDKMTGGLQPADMIVVAGRPSMGKTTFAMNLC 234
Query: 319 CNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378
N+ + ++ SME ++L + + A G+ E+ L
Sbjct: 235 ENVAIKSNKPVLVFSMEMPAESIVMRML-SSLGRINQGAIRSGNLEKDDWPRITSAIHML 293
Query: 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438
S I + +L ++ + A G GL++ Y +L Q P + +S+
Sbjct: 294 SEQRFFID-DTPALSPLEMRARARRVARECGGELGLIMVDYLQL-MQVPGVENRVNEISE 351
Query: 439 MLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR--- 494
+ +K A+ C V ++ R L + P + D+ S D + ++R
Sbjct: 352 ISRSLKGIAKELNCPVLALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADLIVFLYRDEV 411
Query: 495 -NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAF 525
N+D + ++ + K RN +GT+ AF
Sbjct: 412 YNKDSNERGV--AEIIIGKQRNGPIGTVRLAF 441
>gi|297616291|ref|YP_003701450.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297144128|gb|ADI00885.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 675
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 38 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH----GHEVVIAFPYWRNGKLV 93
I E L P ++ Y R I E L R H G + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECLVVPFRVRGKIR 196
Query: 94 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 152
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 153 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 212
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 213 CWRVRWP-KKNDV 224
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|262067817|ref|ZP_06027429.1| putative toprim domain protein [Fusobacterium periodonticum ATCC
33693]
gi|291378541|gb|EFE86059.1| putative toprim domain protein [Fusobacterium periodonticum ATCC
33693]
Length = 807
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 60/127 (47%), Gaps = 20/127 (15%)
Query: 112 KVFYGLDDIEGESD----IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
++F+G DI+ + + I+IVEG +D ++ + GF N V++ +S + +++ E+
Sbjct: 233 EIFFGWSDIKKKFNPLGIILIVEGYIDFVTAYQKGFRNVVAL---GSASFTDEHIAFLEK 289
Query: 168 DTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHF 227
+ K ++I +A D D G + L R ++ + N + +
Sbjct: 290 N-------------KNINKIAIALDNDKTGNKRTDSLIERFKNKKLNKDYVVAINKMSQY 336
Query: 228 KDANEVL 234
KD +E+L
Sbjct: 337 KDLDEIL 343
>gi|297617318|ref|YP_003702477.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
gi|297145155|gb|ADI01912.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680]
Length = 675
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 75/193 (38%), Gaps = 21/193 (10%)
Query: 38 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRH----GHEVVIAFPYWRNGKLV 93
I E L P ++ Y R I E L R H G + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECLVVPFRVRGKIR 196
Query: 94 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP-DG 152
+ R ++ + K++ + LD +EG+S +IVEGE D L +A V +P
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 153 APSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRER 212
P + +K E + + YL + D D + LA +G ER
Sbjct: 257 VPGNNFRKEWKREFEGIRTIYL--------------IPQDDDASANFVRSALA-VLGEER 301
Query: 213 CWRVRWP-KKNDV 224
C V P K+ DV
Sbjct: 302 CKVVELPWKRGDV 314
>gi|341874604|gb|EGT30539.1| hypothetical protein CAEBREN_03235 [Caenorhabditis brenneri]
Length = 568
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
PGE+T++TG +GK+ ++ ++ G + + CS E ++ +L ++ P
Sbjct: 323 PGEMTVLTGGTGNGKTTFLCEYSLDLFTQ-GVRTLFCSFEMPEKKILHWMLVQYAGLPLH 381
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
Y S ++ FE+ S+ +++ E SI + + V G++ +V
Sbjct: 382 RVEYSNSINSW-LDRFERS----SSALTMLDSEEFMEKSINEIARAIRIHVENSGIQHVV 436
Query: 416 IDPYNELDHQRPVSQTETEYV------SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 469
ID L +Q ++ ++ + + + +++ A + H+ V HPR+
Sbjct: 437 IDNLQFLINQGMMADEKSSGLDRFHLQDRFVGYMRQLATQNQIHITMVVHPRKTDG--DT 494
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRD 497
++ GSA + DN + I R RD
Sbjct: 495 EIDVQHFGGSARVTQEADNVLAIQRKRD 522
>gi|410492722|ref|YP_006908924.1| primase/helicase [Escherichia phage KBNP135]
gi|404056573|gb|AFR52106.1| primase/helicase [Escherichia phage KBNP135]
Length = 596
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 119/573 (20%), Positives = 212/573 (36%), Gaps = 88/573 (15%)
Query: 5 AKCGWKGSTSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERLISAE 64
C GS + KK + +REI +D LEL P G EL + +S
Sbjct: 39 GSCNRCGSYEVFEKGTTPTPNEKKELSPEELREILDDCLEL-PQG-ELTRRLIPKAVSER 96
Query: 65 TLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-KKFW-----QEKD--------- 109
R + Q FP R+G +V + + + KKF+ +E D
Sbjct: 97 YECRIGLSQTDGQTPDSYFFPRERDGNIVGYEVKLLDSKKFYYIGSVKEADLFGMAQAQR 156
Query: 110 ----TEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSE 165
+K+F D + S ++ + +++ A CVS+P GA S S V S
Sbjct: 157 GDVYNKKLFIFEDPLSCMSGFHVLTAFTNATNIKPA----CVSLPFGAGSISS---VLSR 209
Query: 166 EQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK----- 220
+D +L I+L D D G E+A GR V++ +
Sbjct: 210 NRD-----------FLNGFEEIVLCMDNDDAG-----EIALTKGRALYPHVKFARIPKGT 253
Query: 221 ---KNDVDHFKDANEVLMYLGPGALKEVVEN----AELYPIMGLFNFRDYFDEIDAYYHR 273
KDAN++L+ G +E+ N A+ G FD ++ +
Sbjct: 254 FTYNGQEKEIKDANDMLL---AGRGQELFNNLKYSAKRESPAGAVTV---FDCLEDALKK 307
Query: 274 TSGDEFGISTGWRALNEL-YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332
E+GI W+ LNE+ + + GE+ + G SGK+ L+ + G+
Sbjct: 308 A---EWGIPYPWKTLNEMTFGIRWGEMVAIGGGVGSGKTLIAHELVAWLCLEHGFNGGGF 364
Query: 333 SMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG-KAWLSNTFSLIRCENDS 391
+E KV + + K PF + ++ E K +L + F +
Sbjct: 365 FLEEKVGMSVKNIAGKSASVPFHRPDVEYEESQLRDEALRYADKFFLYDNFG-----QNE 419
Query: 392 LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHA 451
IK + + V+ + + +++D L S+ TE +S++ + + +
Sbjct: 420 WDDIKQCI---RFWVVENQCKFIILDNITALVSHLTPSEVNTE-ISKIASELAGMCKELD 475
Query: 452 CHVWFVAHPRQLHNWVGEPPNL-------YDISGSAHFINKCDNGIVIHRNRDPEAGPID 504
+ ++H L+ G P+ +GS + C +I RD +A +
Sbjct: 476 FTAFVLSH---LNAPAGGAPHEEGGQVKEVQFTGSRSLMRWCQ--CIIGFERDKQADGLG 530
Query: 505 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537
+ +R ++ + G G + Y TG ++
Sbjct: 531 KNLSIIRLLKERNYGQTGVCYTKYINETGRLVE 563
>gi|148652712|ref|YP_001279805.1| replicative DNA helicase [Psychrobacter sp. PRwf-1]
gi|148571796|gb|ABQ93855.1| primary replicative DNA helicase [Psychrobacter sp. PRwf-1]
Length = 479
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 26/261 (9%)
Query: 279 FGISTGWRALN-ELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337
G+ T + LN + + PG+L IV P+ GK+ + L + H V+ SME
Sbjct: 206 IGLKTPFTELNNKTQGLQPGDLIIVAARPSMGKTTFAMNLAEGVLFHENLPVVVFSMEMP 265
Query: 338 VREHARKLLEK--HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN------ 389
+LL I + + +M +E+ A + N + ++ +N
Sbjct: 266 AESIVMRLLSSWGQINQTSLR------SAQMNEDEW----ARMMNAITHLQDKNLYIDDS 315
Query: 390 DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449
+LP + + A G G+V+ Y +L +S E +S++ +K A+
Sbjct: 316 TALPPSELRSRCRRIAKNHDGKMGMVVVDYLQLMKVPSLSGNRVEEISEISRSLKALARE 375
Query: 450 HACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR----NRDPEAGPID 504
C V ++ R L N + P + D+ S D I+R N + + +
Sbjct: 376 LNCPVIALSQLNRSLENRPNKRPIMSDLRESGAIEQDADLITFIYRDEVYNENSDLKGV- 434
Query: 505 RVQVCVRKVRNKVVGTIGEAF 525
++ + K RN +GT+ AF
Sbjct: 435 -AEIIIGKQRNGPIGTVRLAF 454
>gi|308512513|ref|XP_003118439.1| hypothetical protein CRE_00695 [Caenorhabditis remanei]
gi|308239085|gb|EFO83037.1| hypothetical protein CRE_00695 [Caenorhabditis remanei]
Length = 568
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Query: 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
PGE+T++TG +GK+ ++ ++ G + + CS E ++ +L ++ P
Sbjct: 323 PGEMTVLTGGTGNGKTTFLCEYSLDLFTQ-GVRTLFCSFEMPEKKILHWMLVQYAGLPLH 381
Query: 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLV 415
Y S ++ FE+ S+ +++ E SI + + V G++ +V
Sbjct: 382 RVEYSNSINSW-LDRFERS----SSALTMLDSEEFMEKSINEIARAIRIHVENSGIQHVV 436
Query: 416 IDPYNELDHQRPVSQTETEYV------SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGE 469
ID L +Q ++ ++ + + + +++ A + H+ V HPR+
Sbjct: 437 IDNLQFLINQGMMADEKSSGLDRFHLQDRFVGYMRQLATQNQIHITMVVHPRKTDG--DT 494
Query: 470 PPNLYDISGSAHFINKCDNGIVIHRNRD 497
++ GSA + DN + I R RD
Sbjct: 495 EIDVQHFGGSARVTQEADNVLAIQRKRD 522
>gi|298674096|ref|YP_003725846.1| TOPRIM domain-containing protein [Methanohalobium evestigatum
Z-7303]
gi|298287084|gb|ADI73050.1| TOPRIM domain protein [Methanohalobium evestigatum Z-7303]
Length = 163
Score = 38.9 bits (89), Expect = 6.7, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK 182
E DI++VEG+ D S+E+ G DG +VS K++ ++ Y
Sbjct: 34 EGDILVVEGKRDICSLEKLGI-------DGDIETVSNKSLLDFSENVAY----------- 75
Query: 183 QASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 242
+++ TD D G+ LA +L+ + + D D+ + E L L +
Sbjct: 76 TGKSVVILTDWDRRGEILASKLS-----------EYLQTLDTDYDIEIREQLKSLVKKEI 124
Query: 243 KEV----VENAELYPIMG-LFNFRDYFDEIDAYYHRT 274
K++ +L I G +F D DE + YYHR+
Sbjct: 125 KDIESLYTYVVKLRSITGSTSDFADIADEFEYYYHRS 161
>gi|297544923|ref|YP_003677225.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842698|gb|ADH61214.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 675
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 38 ITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEV----VIAFPYWRNGKLV 93
I E L P ++ Y R I E L R H E + P+ GK+
Sbjct: 137 IKEAKARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEETGQVECLVVPFRVRGKIR 196
Query: 94 NCKYRDFNKKFWQEKDTEKVFYGLDDIEGESDIIIVEGEMDKL----SMEEAGF-LNCVS 148
+ R ++ + K++ + LD +EG+S +IVEGE D L ++E G + VS
Sbjct: 197 AIRGRAYDGRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESDALRTIQALEACGVDIPVVS 256
Query: 149 VP 150
VP
Sbjct: 257 VP 258
>gi|116871702|ref|YP_848483.1| hypothetical protein lwe0282 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740580|emb|CAK19700.1| conserved hypothetical protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 883
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338
F + + + N +++++ G P +GK++ I +I N ++ + S NK
Sbjct: 129 FPFGLNYSQMQAVKNSFSYQISVIQGPPGTGKTQTILNIIANAVKNQK-NIAVVSPNNKA 187
Query: 339 REHARKLLEKHIKKPFFEANYGGSAER----MTVEEF-EQGKAWLSNTFSLIRCENDSLP 393
+ + LEK K F A G S R + + E ++ K+W L++ E D +
Sbjct: 188 TTNVYEKLEKEGFK-FIAAQLGNSNNRKNFYLKISEIPKEIKSWFIQEEQLLKLEQDLVQ 246
Query: 394 SIKWVLDLA----KAAVLRHGVR 412
K +++L K A L+H +R
Sbjct: 247 KQKKIVELLKEKNKIATLKHKLR 269
>gi|423261928|ref|YP_007010530.1| DNA primase/helicase [Salinivibrio phage CW02]
gi|380851341|gb|AFE86185.1| DNA primase/helicase [Salinivibrio phage CW02]
Length = 532
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 100/502 (19%), Positives = 186/502 (37%), Gaps = 50/502 (9%)
Query: 58 ERLISAETLR----RNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFN-KKFW-----QE 107
+R + ETL+ R + ++ + FP GKL+ K + + KK W
Sbjct: 58 DRGLDKETLKYFGVRTGLSEQDGSTPNIRYFPLTEEGKLLTYKCKLISVKKMWTIPVGNI 117
Query: 108 KDTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQ 167
K+ + + G+ + I EGE D +++ + L S P+ + + ++P
Sbjct: 118 KNADLFGWERAKRTGQRRLYITEGEEDAMALFK--ILKMGSKPEYRDRNAAVTSLPFGVS 175
Query: 168 DTKYQYLWNCKMYLKQASR-IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDH 226
+ K+ + I+L D D PG+ EE+ + V P
Sbjct: 176 SAPEVVARAAEKAKKEGFKEIVLVFDQDEPGRKAVEEVCKLV--PNVMSATLP------- 226
Query: 227 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWR 286
KDANE L G +K+ + + + EI + + E+G+S W
Sbjct: 227 LKDANECLK---EGYIKDTYNKVVFQSSVPKNSRLVWGHEIHEEAKKKA--EWGLSWPWD 281
Query: 287 ALNELY-NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL 345
+ E+ + GE + GKSE ++AL + G K +L E + + L
Sbjct: 282 GMTEITRGIRFGETYYIAAGEKMGKSEIVNALAAHFVMEHGLKVMLAKPEEANNKSYKLL 341
Query: 346 LEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN----DSLPSIKWVLDL 401
L K K F + + + +EQ ++ D+L + D+
Sbjct: 342 LGKIAGKVFHDPK-----QDFDEDAYEQAGEIAKERVCMLNLYQHVGWDTLKT-----DI 391
Query: 402 AKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS-----QMLTMVKRFAQHHACHVWF 456
A AA GV+ + +DP L ++ S+ + + + A CH+
Sbjct: 392 AYAAA--QGVKAVFVDPITNLTNRMSSSERNDALMGIAEELAAMALDLDIAIFIFCHLNK 449
Query: 457 VAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNK 516
+ G+ Y +GS+ C+ I + ++DP+ R + + ++
Sbjct: 450 PGKGMTPWDRGGKITTDY-FAGSSAMARSCNYAIGLQGDKDPDKDLHSRNTRELVILADR 508
Query: 517 VVGTIGEAFLSYNRVTGEYMDI 538
G G L +N TG + ++
Sbjct: 509 EFGESGHVTLYWNHETGLFKEV 530
>gi|347522197|ref|YP_004779768.1| DNA primase [Lactococcus garvieae ATCC 49156]
gi|385833582|ref|YP_005871357.1| DNA primase [Lactococcus garvieae Lg2]
gi|343180765|dbj|BAK59104.1| DNA primase [Lactococcus garvieae ATCC 49156]
gi|343182735|dbj|BAK61073.1| DNA primase [Lactococcus garvieae Lg2]
Length = 628
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 33/200 (16%)
Query: 68 RNRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDD----I 120
+NR+M + +GH V + W+ KY N + D Y LD I
Sbjct: 197 QNRIMFPLKNEYGHVVGFSGRKWQENDTSKAKY--INTSATKIFDKSYELYNLDRAKPVI 254
Query: 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMY 180
++ ++EG MD ++ +AG N V+ +++++K+V K
Sbjct: 255 FKTREVYLMEGFMDVIAAYKAGIFNVVAT---MGTALTEKHV---------------KRL 296
Query: 181 LKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPG 240
K A +L DGD GQ + +G E+ VR P+ D D + +
Sbjct: 297 KKIAKNYVLIYDGDQAGQNAIYKAIDLIGEEKTQIVRVPEGLDPDDYSKKYSL------E 350
Query: 241 ALKEVVENAELYPIMGLFNF 260
+L ++EN+ + P L ++
Sbjct: 351 SLAGLMENSRIQPTEFLIDY 370
>gi|119570178|gb|EAW49793.1| progressive external ophthalmoplegia 1, isoform CRA_a [Homo
sapiens]
Length = 531
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 50/312 (16%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIV 302
A + +FR +E+ S E W +L +L GELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWI 314
TG SGK+ +I
Sbjct: 414 TGPTGSGKTTFI 425
>gi|219685541|ref|ZP_03540358.1| DNA primase [Borrelia garinii Far04]
gi|219672940|gb|EED29962.1| DNA primase [Borrelia garinii Far04]
Length = 593
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 41/201 (20%)
Query: 20 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 73
N++Q +L K + I + D EL L G EL + + S+E LR++ +
Sbjct: 132 NKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYSSEILRKSGLFS 191
Query: 74 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 116
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KTNPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
L++I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LNEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLA------------- 295
Query: 177 CKMYLKQASRIILATDGDPPG 197
+ + A II + DGD G
Sbjct: 296 --LIQRYADEIIFSFDGDDAG 314
>gi|34365099|emb|CAE45905.1| hypothetical protein [Homo sapiens]
Length = 531
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 122/312 (39%), Gaps = 50/312 (16%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFDLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVL----PGELTIV 302
A + +FR +E+ S E W +L +L GELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWI 314
TG SGK+ +I
Sbjct: 414 TGPTGSGKTTFI 425
>gi|217421206|ref|ZP_03452711.1| gp61 [Burkholderia pseudomallei 576]
gi|217396618|gb|EEC36635.1| gp61 [Burkholderia pseudomallei 576]
Length = 321
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 35/247 (14%)
Query: 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
++ +++ + H G + W ++ + GE+T+ GV GKS + ++ +
Sbjct: 30 EFIEDLVEHLHSPKEVAPGTESPWASVGDSLRFREGEVTLWGGVNGHGKSAVLGEVMLHA 89
Query: 322 NEHAGWKFVLCSMENK----VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 377
AG + + SME + + AR+ P F +G R T E W
Sbjct: 90 MS-AGDRVCIASMEMRPIATMERLARQAAATEKPAPEFIRGFG----RWTDERL-----W 139
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437
L + +L +A+ GV +VID + + +V
Sbjct: 140 LYAHVGTVERAR--------MLAVARYCRKELGVHHVVIDSLLKCGIAPDDYAGQKSFVD 191
Query: 438 QMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEP----PNLYDISGSAHFINKCDNGIVIH 493
+ + A+ H+ V H R+ GE P+ +D+ G+ + DN +++H
Sbjct: 192 ALCAL----ARDTGVHIHLVHHARK-----GEKEAVVPDKFDMKGAGEITDLVDNVLIVH 242
Query: 494 RNRDPEA 500
RN+ EA
Sbjct: 243 RNKTKEA 249
>gi|219684222|ref|ZP_03539166.1| DNA primase [Borrelia garinii PBr]
gi|219672211|gb|EED29264.1| DNA primase [Borrelia garinii PBr]
Length = 593
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 41/201 (20%)
Query: 20 NRSQSSLKKFSKMKTIREITEDSLELEPL------GNELRAYFAERLISAETLRRNRVMQ 73
N++Q +L K + I + D EL L G EL + + S+E LR++ +
Sbjct: 132 NKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYSSEILRKSGLFS 191
Query: 74 KRHGHEVVIA----FPYWR-NGKLVNCKYRDFNKK-----------FWQEKDTEKVFY-G 116
K + +++ FP G +V RD + K +++K+ FY G
Sbjct: 192 KTNPKASILSQRLIFPIKDFKGNVVGFGGRDLDGKGSKYINLSETEVFKKKELLYGFYEG 251
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
L++I+ +I+VEG +D L+ +G VS +S SK+++
Sbjct: 252 LNEIKSTKSVILVEGYIDVLAFFTSGIKRAVST---LGTSFSKEHLA------------- 295
Query: 177 CKMYLKQASRIILATDGDPPG 197
+ + A II + DGD G
Sbjct: 296 --LIQRYADEIIFSFDGDDAG 314
>gi|31615712|pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
gi|31615713|pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
Y Q +IIL D D G+ EE A+
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQ 221
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,096,116,012
Number of Sequences: 23463169
Number of extensions: 398490329
Number of successful extensions: 964111
Number of sequences better than 100.0: 826
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 670
Number of HSP's that attempted gapping in prelim test: 962634
Number of HSP's gapped (non-prelim): 1017
length of query: 539
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 391
effective length of database: 8,886,646,355
effective search space: 3474678724805
effective search space used: 3474678724805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)