BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009230
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q57|A Chain A, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|B Chain B, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|C Chain C, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|D Chain D, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|E Chain E, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|F Chain F, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
pdb|1Q57|G Chain G, The Crystal Structure Of The Bifunctional Primase-helicase
Of Bacteriophage T7
Length = 503
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 113/474 (23%), Positives = 182/474 (38%), Gaps = 75/474 (15%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEK-VFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + +G G I++ EGE+D L++ E
Sbjct: 51 QNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKY 110
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAX 206
V G +S +KK + + Y Q +IIL D D G+ EE A
Sbjct: 111 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDEAGRKAVEEAAQ 158
Query: 207 XXXXXXXXXXXXPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY---PIMGLFNFRDY 263
P KDANE + + E V NA + ++ + R+
Sbjct: 159 VLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRER 211
Query: 264 FDEIDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNI 321
E H +S + G+ +G +N+ GE+ +VT S ++
Sbjct: 212 IRE-----HLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266
Query: 322 NEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVE--EFEQGKAWLS 379
G K L +E V E A L+ H + +++ S +R +E +F+Q W
Sbjct: 267 GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSD---SLKREIIENGKFDQ---WFD 320
Query: 380 NTF---------SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430
F S E D L LAK A +R G+ VI LDH V
Sbjct: 321 ELFGNDTFHLYDSFAEAETDRL--------LAKLAYMRSGLGCDVI----ILDHISIVVS 368
Query: 431 T-----ETEYVSQMLTMVKRFAQHHACHVWFVAHPR-----QLHNWVGEPPNLYDISGSA 480
E + + ++T +K FA+ + + H + + H G P ++ D+ GS
Sbjct: 369 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHE-EGRPVSITDLRGSG 427
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
D I + RN+ + + V VR ++ + G G A ++ YN+ TG
Sbjct: 428 ALRQLSDTIIALERNQQGDMPNL----VLVRILKCRFTGDTGIAGYMEYNKETG 477
>pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
Length = 289
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 45 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 104
Query: 357 ANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLDLAKAA 405
++ S +R +E +F+Q W F S E D L LAK A
Sbjct: 105 SD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--------LAKLA 150
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
+R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 151 YMRSGLGCDVII----LDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 206
Query: 461 R-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 207 KNPDKGKAHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKC 261
Query: 516 KVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 262 RFTGDTGIAGYMEYNKETG 280
>pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
Length = 296
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 45/259 (17%)
Query: 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
GE+ +VT GKS ++ G K L +E V E A L+ H + +
Sbjct: 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQ 94
Query: 357 ANYGGSAERMTVE--EFEQGKAWLSNTF---------SLIRCENDSLPSIKWVLDLAKAA 405
++ S +R +E +F+Q W F S E D L LAK A
Sbjct: 95 SD---SLKREIIENGKFDQ---WFDELFGNDTFHLYDSFAEAETDRL--------LAKLA 140
Query: 406 VLRHGVRGLVIDPYNELDHQRPVSQT-----ETEYVSQMLTMVKRFAQHHACHVWFVAHP 460
+R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 141 YMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196
Query: 461 R-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 197 KNPDKGKAHEE-GRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILKC 251
Query: 516 KVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 252 RFTGDTGIAGYMEYNKETG 270
>pdb|1NUI|A Chain A, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
pdb|1NUI|B Chain B, Crystal Structure Of The Primase Fragment Of Bacteriophage
T7 Primase- Helicase Protein
Length = 255
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 59 RLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-VFYG 116
R IS ET ++ + K G +A +NG +V+ K RD +K F + +G
Sbjct: 84 RGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFG 143
Query: 117 LDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWN 176
G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 144 KHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE--------- 194
Query: 177 CKMYLKQASRIILATDGDPPGQALAEELAXXXXXXXXXXXXXPKKNDVDHFKDANEVLMY 236
Y Q +IIL D D G+ EE A P KDANE +
Sbjct: 195 ---YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANECHL- 243
Query: 237 LGPGALKEVVE 247
G +E++E
Sbjct: 244 --NGHDREIME 252
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 116/281 (41%), Gaps = 27/281 (9%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNIN 322
+D I+ ++R +GD GI TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 170 YDNIEMLHNR-NGDITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228
Query: 323 EHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEE---FEQGKAW 377
+ S+E ++ ++L E +I ++T E+
Sbjct: 229 TKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTG------KLTPEDWGKLTMAMGS 282
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEY 435
LSN I D PSI+ AK L+ G+ +VID + + +
Sbjct: 283 LSNAGIYI----DDTPSIRVSDIRAKCRRLKQESGLGMVVIDYLQLIQGSGRNRENRQQE 338
Query: 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
VS++ +K A+ V ++ R + + P + D+ S D ++R
Sbjct: 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDLRESGSIEQDADIVAFLYR 398
Query: 495 ----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
N+D E + +++ + K RN VGT+ AF+ YN+
Sbjct: 399 DDYYNKDSENK--NIIEIIIAKQRNGPVGTVQLAFIKEYNK 437
>pdb|2R6A|A Chain A, Crystal Form Bh1
pdb|2R6A|B Chain B, Crystal Form Bh1
pdb|2R6E|A Chain A, Crystal Form B2
pdb|2R6E|B Chain B, Crystal Form B2
pdb|2R6C|A Chain A, Crystal Form Bh2
pdb|2R6C|B Chain B, Crystal Form Bh2
pdb|2R6C|C Chain C, Crystal Form Bh2
pdb|2R6C|D Chain D, Crystal Form Bh2
pdb|2R6C|E Chain E, Crystal Form Bh2
pdb|2R6C|F Chain F, Crystal Form Bh2
pdb|2R6D|A Chain A, Crystal Form B1
pdb|2R6D|B Chain B, Crystal Form B1
pdb|2R6D|C Chain C, Crystal Form B1
pdb|2R6D|D Chain D, Crystal Form B1
pdb|2R6D|E Chain E, Crystal Form B1
pdb|2R6D|F Chain F, Crystal Form B1
pdb|4ESV|A Chain A, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|B Chain B, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|C Chain C, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|D Chain D, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|E Chain E, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|F Chain F, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|G Chain G, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|H Chain H, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|I Chain I, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|J Chain J, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|K Chain K, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
pdb|4ESV|L Chain L, A New Twist On The Translocation Mechanism Of Helicases
From The Structure Of Dnab With Its Substrates
Length = 454
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 27/281 (9%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP-GELTIVTGVPNSGKSEWIDALICNIN 322
+D I+ ++R G+ GI TG+ L+ + + +L IV P+ GK+ + + N+
Sbjct: 170 YDNIEMLHNR-DGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228
Query: 323 EHAGWKFVLCSMENKVREHARKLL--EKHIKKPFFEANYGGSAERMTVEE---FEQGKAW 377
+ S+E ++ ++L E +I ++T E+
Sbjct: 229 TKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTG------KLTPEDWGKLTMAMGS 282
Query: 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPVSQTETEY 435
LSN I D PSI+ AK L+ G+ +VID + + +
Sbjct: 283 LSNAGIYI----DDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQE 338
Query: 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494
VS++ +K A+ V ++ R + + P + DI S D ++R
Sbjct: 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398
Query: 495 ----NRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLS-YNR 530
N+D E + +++ + K RN VGT+ AF+ YN+
Sbjct: 399 DDYYNKDSENK--NIIEIIIAKQRNGPVGTVQLAFIKEYNK 437
>pdb|3BH0|A Chain A, Atpase Domain Of G40p
Length = 315
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVG 468
G R +V+ Y +L + + T +SQ+ +K+ A+ V ++ RQ+
Sbjct: 180 GKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQD 239
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ P L D+ S D ++R+ D E+ + V+V + K R+ VGT+ AF+
Sbjct: 240 KRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFI 299
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVG 468
G R +V+ Y +L + + T +SQ+ +K+ A+ V ++ RQ+
Sbjct: 309 GKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQD 368
Query: 469 EPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEAFL 526
+ P L D+ S D ++R+ D E+ + V+V + K R+ VGT+ AF+
Sbjct: 369 KRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFI 428
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 12 STSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL--ISAETLRRN 69
S ++++N+ S S+K FS ++ I DS + F ER+ +S T
Sbjct: 235 SQHSMINNSNSIRSVK-FSPQGSLLAIAHDSNSFGCI-TLYETEFGERIGSLSVPTHSSQ 292
Query: 70 RVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF---YGLDDIEGESDI 126
+ + V++ + +G+ + D +FW K E++ DDIE E DI
Sbjct: 293 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 352
Query: 127 IIVEGEMDKLS 137
+ V+ D L+
Sbjct: 353 LAVDEHGDSLA 363
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 12 STSALVDNNRSQSSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL--ISAETLRRN 69
S ++++N+ S S+K FS ++ I DS + F ER+ +S T
Sbjct: 225 SQHSMINNSNSIRSVK-FSPQGSLLAIAHDSNSFGCI-TLYETEFGERIGSLSVPTHSSQ 282
Query: 70 RVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVF---YGLDDIEGESDI 126
+ + V++ + +G+ + D +FW K E++ DDIE E DI
Sbjct: 283 ASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 342
Query: 127 IIVEGEMDKLS 137
+ V+ D L+
Sbjct: 343 LAVDEHGDSLA 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,223,722
Number of Sequences: 62578
Number of extensions: 735854
Number of successful extensions: 1745
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1739
Number of HSP's gapped (non-prelim): 12
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)