BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009230
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03692|PRIM_BPT7 DNA primase/helicase OS=Enterobacteria phage T7 GN=4 PE=1 SV=1
Length = 566
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 122/500 (24%), Positives = 203/500 (40%), Gaps = 62/500 (12%)
Query: 56 FAERLISAETLRRNRV-MQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEK-V 113
R IS ET ++ + K G +A +NG +V+ K RD +K F +
Sbjct: 81 LTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDA 140
Query: 114 FYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQY 173
+G G I++ EGE+D L++ E V G +S +KK + +
Sbjct: 141 LFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYE------ 194
Query: 174 LWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEV 233
Y Q +IIL D D G+ EE A+ + + P KDANE
Sbjct: 195 ------YFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLP-------CKDANEC 241
Query: 234 LMYLGPGALKEVVENAELY---PIMGLFNFRDYFDEIDAYYHRTSGDEFGIS-TGWRALN 289
+ + E V NA + ++ + R+ E H +S + G+ +G +N
Sbjct: 242 HLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIRE-----HLSSEESVGLLFSGCTGIN 296
Query: 290 E-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEK 348
+ GE+ +VT GKS ++ G K L +E V E A L+
Sbjct: 297 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGL 356
Query: 349 HIKKPFFEANYGGSAERMTVE--EFEQ--GKAWLSNTFSLIRCENDSLPSIKWVLDLAKA 404
H + +++ S +R +E +F+Q + + ++TF L DS + LAK
Sbjct: 357 HNRVRLRQSD---SLKREIIENGKFDQWFDELFGNDTFHLY----DSFAEAETDRLLAKL 409
Query: 405 AVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459
A +R G+ VI LDH V E + + ++T +K FA+ + + H
Sbjct: 410 AYMRSGLGCDVI----ILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 465
Query: 460 PR-----QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514
+ + H G P ++ D+ GS D I + RN+ + + V VR ++
Sbjct: 466 LKNPDKGKAHE-EGRPVSITDLRGSGALRQLSDTIIALERNQQGDMPNL----VLVRILK 520
Query: 515 NKVVGTIGEA-FLSYNRVTG 533
+ G G A ++ YN+ TG
Sbjct: 521 CRFTGDTGIAGYMEYNKETG 540
>sp|P20315|PRIM_BPT3 DNA primase/helicase OS=Enterobacteria phage T3 GN=4 PE=3 SV=1
Length = 566
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 110/461 (23%), Positives = 184/461 (39%), Gaps = 49/461 (10%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNC 146
+NG +V+ K RD +K F + L + G I++ EGE+D L++ E
Sbjct: 113 QNGSIVSQKVRDKDKNFKTTGSHKSDALFLKHLWSGGKKIVVTEGEIDALTVMELQDCKY 172
Query: 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELAR 206
V G +S +KK + + Y Q +IIL D D G+ EE A+
Sbjct: 173 PVVSLGHGASAAKKTCAANYE------------YFDQFEQIILMFDMDDAGRKAVEEAAQ 220
Query: 207 RVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE 266
+ + P KDANE + A+ E V NA + G+ + D
Sbjct: 221 VLPAGKVRVAVLP-------CKDANECHIMGEDKAILEQVWNANPWVPDGVVSALSLKDR 273
Query: 267 IDAYYHRTSGDEFGIS-TGWRALNE-LYNVLPGELTIVTGVPNSGKSEWIDALICNINEH 324
+ TS D G+ G + LN+ GE+ +VT GKS ++ +
Sbjct: 274 VKEAM--TSEDAVGLLFDGCQGLNDRTLGARGGEVVMVTSGSGMGKSTFVRQQALAWGKR 331
Query: 325 AGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEEFEQGKAWLSNTF 382
G + L +E V + + ++ + K +++ AE +E+ + + +TF
Sbjct: 332 MGKRVGLAMLEESVEDTIQDMMGLNNKVRLRQSDEVKKAIAEDGRFDEWYD-ELFGDDTF 390
Query: 383 SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-----SQTETEYVS 437
L DS + LAK A +R G+ VI LDH V E + +
Sbjct: 391 HLY----DSFAEAEADRLLAKLAYMRTGLGCDVI----VLDHISIVVSASEESDERKMID 442
Query: 438 QMLTMVKRFAQHHACHVWFVAHPRQLHNWV----GEPPNLYDISGSAHFINKCDNGIVIH 493
+++T +K FA+ + + H + G ++ D+ GS D I +
Sbjct: 443 RLMTKLKGFAKSTGVVLVVICHLKNPEKGKAHEEGRAVSITDLRGSGALRQLSDTIIALE 502
Query: 494 RNRDPEAGPIDRVQVCVRKVRNKVVGTIGEA-FLSYNRVTG 533
RN+ + + V VR ++ + G G A ++ YNR TG
Sbjct: 503 RNQQGDMPNL----VLVRLLKCRFTGDTGIAGYMEYNRETG 539
>sp|Q8CIW5|PEO1_MOUSE Twinkle protein, mitochondrial OS=Mus musculus GN=Peo1 PE=2 SV=1
Length = 685
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 110/497 (22%), Positives = 196/497 (39%), Gaps = 69/497 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNG-------KLVNCKYRDFNKKFW 105
R F ++ +TLRR V R +V FP++ G KL+ + ++ ++
Sbjct: 178 RVMFGLTKVTDDTLRRFSVRYLRSARSLV--FPWFTPGSSGLRGLKLLGAEGQENGVQYV 235
Query: 106 QEKDTEKVFY----GLDDIEG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+ Y GL I ++++++ E+D L++ ++ L +S+P G +
Sbjct: 236 ETTIPRPGVYHNLFGLPLISRRDTEVVVTSRELDSLALSQSTGLPTLSLPRGT-VCLPPA 294
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q RI+ D A+ AR++ +RC VR P
Sbjct: 295 LLP----------------YLEQFRRIVFWLGDDLRSWEAAKLFARKLNPKRCSLVR-PG 337
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N+ L +L ++ A + +FR +E+ S E
Sbjct: 338 NQQPRPLEALNQGL------SLPRILRTALPAWHKSIVSFRQLREEV---LGELSNVEQA 388
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W +L +L G ELT+ TG SGK+ +I ++ G + S E
Sbjct: 389 AGVRWSRFPDLNRLLKGHRKGELTVFTGPTGSGKTTFISEYALDLCTQ-GVNTLWGSFEI 447
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
AR +L + + R+ E+ ++ + W L S
Sbjct: 448 SNVRLARVMLTQF------------AVTRLE-EQLDKYEEWADRFEDLPLYFMTFHGQQS 494
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
I+ V+D + AV + V +VID + +S ++ ++FA ++CHV
Sbjct: 495 IRSVIDTMQHAVYVYDVCHVVIDNLQFMMGHEQLSSDRIAAQDYIVGAFRKFATDNSCHV 554
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 513
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 555 TLVIHPRKEDD--DKELQTASIFGSAKASQEADN-VLILQDRKLVTGPGKRYLQVS---- 607
Query: 514 RNKVVGTIGEAFLSYNR 530
+N+ G +G L +N+
Sbjct: 608 KNRFDGDVGVFPLEFNK 624
>sp|Q5ZIW1|PEO1_CHICK Twinkle protein, mitochondrial OS=Gallus gallus GN=PEO1 PE=2 SV=1
Length = 669
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/499 (20%), Positives = 198/499 (39%), Gaps = 69/499 (13%)
Query: 53 RAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-------RNGKLVNCKYRDFNKKFW 105
+A F ++ TL+R V R +V FP++ R KL+ + R +
Sbjct: 183 KAAFGIAPLADGTLKRFGVRYLRAAKALV--FPWFAPRDAALRGLKLLVAEQRGDAVSYT 240
Query: 106 QEK----DTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+E D + +GL I ++++++ E+D L++ +A + C+++P GA + +
Sbjct: 241 EETLPRFDAYRNLFGLPLIGRRDAEVVLTGSELDALALHQATGVPCLALPRGA-TILPPA 299
Query: 161 NVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPK 220
+P YL+Q R+ L D ++ AR++ +RC V+ P
Sbjct: 300 LLP----------------YLEQFRRVTLWLGDDLRSWEASKLFARKLNPKRCSLVQ-PG 342
Query: 221 KNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFG 280
+ N L L +++ A + +FR +E+ + + E
Sbjct: 343 DLQPRPLEALNRGL------NLTKILRAALPAGHKAIVSFRQLREEV---FGELANSEQV 393
Query: 281 ISTGWRALNELYNVLPG----ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336
W EL +L G ELT+ TG SGK+ +I ++ +C++
Sbjct: 394 AGVKWARFPELNKLLKGHRRGELTVFTGPTGSGKTTFISEYALDLCTQG-----VCTLWG 448
Query: 337 KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--TFSLIRCENDSLPS 394
+ +L + + + A R ++ E W L +
Sbjct: 449 SFEINNIRLAKIMLTQ---------FATRRLEDQLELYDEWADRFEDLPLYFMTFHGQQN 499
Query: 395 IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454
IK VLD + AV + + +V+D + +S ++ ++FA + CH+
Sbjct: 500 IKTVLDTMQHAVYMYDITHVVVDNLQFMMGHEQLSADRLAAQDFIVGAFRKFATDNTCHI 559
Query: 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKV 513
V HPR+ + + I GSA + DN ++I ++R GP R +QV
Sbjct: 560 TLVIHPRKEDD--EKELQTASIFGSAKASQEADN-VLILQDRKLTTGPGKRYLQVS---- 612
Query: 514 RNKVVGTIGEAFLSYNRVT 532
+N+ G +G L +++ +
Sbjct: 613 KNRFDGDVGVFPLEFSKAS 631
>sp|Q96RR1|PEO1_HUMAN Twinkle protein, mitochondrial OS=Homo sapiens GN=PEO1 PE=1 SV=1
Length = 684
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 111/531 (20%), Positives = 206/531 (38%), Gaps = 74/531 (13%)
Query: 24 SSLKKFSKMKTIREITEDSLELEPLGNELRAYFAERL-----ISAETLRRNRVMQKRHGH 78
S +F + +R I ++ L L ++ A+ + ++ +TL+R V R
Sbjct: 143 SKAPEFEDSEEVRRIWNRAIPLWELPDQEEVQLADTMFGLTKVTDDTLKRFSVRYLRPAR 202
Query: 79 EVVIAFPYWRNG-------KLVNCKYR----DFNKKFWQEKDTEKVFYGLDDIEG-ESDI 126
+V FP++ G KL+ K + + + +GL I ++++
Sbjct: 203 SLV--FPWFSPGGSGLRGLKLLEAKCQGDGVSYEETTIPRPSAYHNLFGLPLISRRDAEV 260
Query: 127 IIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR 186
++ E+D L++ ++ L +++P G + + +P YL+Q R
Sbjct: 261 VLTSRELDSLALNQSTGLPTLTLPRGT-TCLPPALLP----------------YLEQFRR 303
Query: 187 IILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246
I+ D A+ AR++ +RC+ VR P + N G L ++
Sbjct: 304 IVFWLGDDLRSWEAAKLFARKLNPKRCFLVR-PGDQQPRPLEALN------GGFNLSRIL 356
Query: 247 ENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYNVLPG----ELTIV 302
A + +FR +E+ S E W +L +L G ELT+
Sbjct: 357 RTALPAWHKSIVSFRQLREEV---LGELSNVEQAAGLRWSRFPDLNRILKGHRKGELTVF 413
Query: 303 TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGS 362
TG SGK+ +I ++ G + S E AR +L +
Sbjct: 414 TGPTGSGKTTFISEYALDLCSQ-GVNTLWGSFEISNVRLARVMLTQF------------- 459
Query: 363 AERMTVEEFEQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420
AE ++ ++ W L SI+ V+D + AV + + ++ID
Sbjct: 460 AEGRLEDQLDKYDHWADRFEDLPLYFMTFHGQQSIRTVIDTMQHAVYVYDICHVIIDNLQ 519
Query: 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSA 480
+ +S ++ + ++FA + CHV V HPR+ + + I GSA
Sbjct: 520 FMMGHEQLSTDRIAAQDYIIGVFRKFATDNNCHVTLVIHPRKEDD--DKELQTASIFGSA 577
Query: 481 HFINKCDNGIVIHRNRDPEAGPIDR-VQVCVRKVRNKVVGTIGEAFLSYNR 530
+ DN ++I ++R GP R +QV +N+ G +G L +N+
Sbjct: 578 KASQEADN-VLILQDRKLVTGPGKRYLQVS----KNRFDGDVGVFPLEFNK 623
>sp|O84799|PRIM_CHLTR DNA primase OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=dnaG
PE=3 SV=1
Length = 595
Score = 39.3 bits (90), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 70/176 (39%), Gaps = 46/176 (26%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGF 143
R GK +N KK +V YGL I E +I+VEG+ D L M + GF
Sbjct: 218 RGGKYINSPETILFKK-------SRVLYGLQFSRKRIAKERRVILVEGQADCLQMIDFGF 270
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 203
NC G +S ++ +V ++ S+ L DGD G E+
Sbjct: 271 -NCTLAAQG--TSFTETHVH--------------ELVKLGVSKAYLLFDGDAAG----EK 309
Query: 204 LARRVGRERCWRV-------RWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
+ RVG + C R P D D F LM GP L+E+++ E Y
Sbjct: 310 ASLRVG-DLCQAAGITAIVCRLPSGQDPDSF------LMQRGPEELRELLDRGEDY 358
>sp|P49519|DNAB_ODOSI Probable replicative DNA helicase OS=Odontella sinensis GN=dnaB
PE=3 SV=1
Length = 455
Score = 39.3 bits (90), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 129/317 (40%), Gaps = 39/317 (12%)
Query: 236 YLGPGALKEVVENAE--LYPIMGLFNFRDYFDEIDAY--------YHRTSGDEFGISTGW 285
Y+ +L+E++ + E ++ + +D F +D + Y + G+S+G+
Sbjct: 137 YITNISLEEILISLEKQMFSLTNEIKNQDVFSSVDLFSQILLELKYKSSKPVLAGLSSGF 196
Query: 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 344
L+ L +L I+ G P+ GK+ + + NI + + S+E + A +
Sbjct: 197 YDLDSLTQGFQKSDLIIIAGRPSMGKTAFCLNIATNIVKKYKLPILFFSLEMSKEQLAYR 256
Query: 345 LLE-KHIKKPFFEANYGGSAERMTVEEFEQGKAWL------SNTFSLIRCENDSLP--SI 395
LL + + P N G + K WL N SL +D+ P SI
Sbjct: 257 LLSAEALINPMRLRN--GHLNK---------KDWLKLHRIIKNLSSLPFFIDDT-PNLSI 304
Query: 396 KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHV 454
+ + K + GLV+ Y +L + S + +SQ+ +K A+ V
Sbjct: 305 QAIRSKVKKLLFEQNTIGLVVIDYLQLMQSSTLKSSNRVQELSQITRSLKNIAREFNVPV 364
Query: 455 WFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR-----DPEAGPIDRVQV 508
++ R + N + + P L D+ S D ++++R++ + +D ++
Sbjct: 365 IALSQLSRNVENRIIKRPILSDLRESGSIEQDADLVLMLYRDQYYNSNNENDEQLDITEL 424
Query: 509 CVRKVRNKVVGTIGEAF 525
+ K RN +GTI F
Sbjct: 425 ILAKQRNGPIGTIQLKF 441
>sp|Q1ILY2|UVRC_KORVE UvrABC system protein C OS=Koribacter versatilis (strain Ellin345)
GN=uvrC PE=3 SV=1
Length = 610
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 29/166 (17%)
Query: 8 GWKGSTSALVDNNRSQSSLKKFSKMK----TIREITEDSLELEPLGNELRAYFAERLISA 63
G K S LV N QS ++F M+ ++ + +D+LEL L N + + + A
Sbjct: 351 GDKRSLIDLVAQNAKQSYDQRFRVMRPQTDVLKSVLQDTLELPELPNRIECFDISHIQGA 410
Query: 64 ETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKD---------TEKVF 114
ET V + W +GK+ YR F K Q D T +
Sbjct: 411 ET---------------VASMVVWEDGKMKKSDYRKFIIKTVQGVDDFASMREVVTRRYK 455
Query: 115 YGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKK 160
+++ + +++++G + +L AG L + + + +S++K+
Sbjct: 456 RIVEENQPMPSLVLIDGGVGQLHA-AAGALEAIGITNQPLASIAKR 500
>sp|P33655|PRIM_CLOAB DNA primase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM
792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=dnaG PE=3
SV=1
Length = 596
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 22/124 (17%)
Query: 126 IIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185
IIIVEG MD +S+ + G N V+ A TK Q K+ + AS
Sbjct: 257 IIIVEGYMDCISLHQYGINNVVASLGTAL--------------TKDQ----AKLLKRYAS 298
Query: 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEV 245
+++++ D D GQA A + RE + ++ K + KD +E + G A +
Sbjct: 299 KVVISYDADTAGQA-ATLRGFDILREAGFDIKIIK---IPDGKDPDEFVRKNGKEAFMRL 354
Query: 246 VENA 249
VENA
Sbjct: 355 VENA 358
>sp|P59966|DNAB_MYCBO Replicative DNA helicase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=dnaB PE=3 SV=1
Length = 874
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA + G G++TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 186 MDEIDAIAS-SGGLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCS 244
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
I V+ S+E E +LL K + G
Sbjct: 245 IRHR--MASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSG 282
>sp|P71715|DNAB_MYCTU Replicative DNA helicase OS=Mycobacterium tuberculosis GN=dnaB PE=1
SV=2
Length = 874
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 6/100 (6%)
Query: 264 FDEIDAYYHRTSGDEFGISTGWRALNELYNVL-PGELTIVTGVPNSGKSEW-IDAL-ICN 320
DEIDA + G G++TG+ L+E+ N L PG++ IV P GKS +D + C+
Sbjct: 186 MDEIDAIAS-SGGLARGVATGFTELDEVTNGLHPGQMVIVAARPGVGKSTLGLDFMRSCS 244
Query: 321 INEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYG 360
I V+ S+E E +LL K + G
Sbjct: 245 IRHR--MASVIFSLEMSKSEIVMRLLSAEAKIKLSDMRSG 282
>sp|Q9PLC9|PRIM_CHLMU DNA primase OS=Chlamydia muridarum (strain MoPn / Nigg) GN=dnaG
PE=3 SV=1
Length = 600
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 46/176 (26%)
Query: 88 RNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGF 143
+ GK +N KK +V YGL I E +I+VEG+ D L M + GF
Sbjct: 220 KGGKYINSPETLLFKK-------SRVLYGLQFSRKRIAKEKRVILVEGQADCLQMIDFGF 272
Query: 144 LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEE 203
NC G +S ++ +V ++ S+ L DGD G E+
Sbjct: 273 -NCTLAAQG--TSFTETHVK--------------ELVKLGVSKAYLLFDGDAAG----EK 311
Query: 204 LARRVGRERCWRV-------RWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELY 252
+ RVG + C R P D D F LM GP L+E+++ E Y
Sbjct: 312 ASLRVG-DLCQVAGIAVIVCRLPSGQDPDSF------LMQRGPEELRELLDRGEDY 360
>sp|P71481|PRIM_LEGPN DNA primase OS=Legionella pneumophila GN=dnaG PE=3 SV=1
Length = 576
Score = 37.0 bits (84), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 32/134 (23%)
Query: 82 IAFP-YWRNGKLVNCKYRDFNK----KFWQEKDT-----EKVFYGLDDIEGES----DII 127
I FP + RNG+++ R +K K+ +T + YGL + + II
Sbjct: 195 IMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLFQKSRELYGLHQVLSQQKNPDSII 254
Query: 128 IVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRI 187
+VEG MD +++ + G N V+ A S+ ++ ++ K +
Sbjct: 255 VVEGYMDVIALAQHGIFNVVATLGTATST------------------FHIQLLAKHTKHL 296
Query: 188 ILATDGDPPGQALA 201
I DGD G+ A
Sbjct: 297 IFCFDGDAAGKQAA 310
>sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3
Length = 1007
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417
+M +E FE K+WLS T I C+ D K+VL L K ++ L ID
Sbjct: 4 KMIIENFEALKSWLSKTLEPI-CDADPSALAKYVLALVKKDKSEKELKALCID 55
>sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2
Length = 1012
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417
+M +E FE K+WLS T I C+ D K+VL L K ++ L ID
Sbjct: 4 KMIIENFEALKSWLSKTLEPI-CDADPSALAKYVLALVKKDKSEKELKALCID 55
>sp|Q9PM37|PRIM_CAMJE DNA primase OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=dnaG PE=3 SV=1
Length = 605
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 109 DTEKVFYGLD----DIEGESDIIIVEGEMDKLSMEEAGFLNCVSV 149
D ++FY + +I + +II+ EG MD ++ +AGF N V+V
Sbjct: 229 DKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAV 273
>sp|C1F4W9|UVRC_ACIC5 UvrABC system protein C OS=Acidobacterium capsulatum (strain ATCC
51196 / DSM 11244 / JCM 7670) GN=uvrC PE=3 SV=1
Length = 645
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 31/143 (21%)
Query: 10 KGSTSALVD---NNRSQSSLKKFSKM----KTIREITEDSLELEPLGNELRAYFAERLIS 62
+G +LVD N QS ++F M K I+E +D+L LE L + + +
Sbjct: 371 RGDKRSLVDLAGQNARQSYEQRFRVMQPNQKAIQEALQDALMLEELPRRIECFDISHIQG 430
Query: 63 AETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKF---------WQEKDTEKV 113
AET V + W NG + YR F K +E T +
Sbjct: 431 AET---------------VASMVVWENGAMKKADYRKFQIKTVSGVDDFASMREVLTRRY 475
Query: 114 FYGLDDIEGESDIIIVEGEMDKL 136
+++ + D+I+++G + +L
Sbjct: 476 RRVIEEKQAMPDVILIDGGIGQL 498
>sp|A2BK98|NDK_HYPBU Nucleoside diphosphate kinase OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=ndk PE=3 SV=1
Length = 142
Score = 34.3 bits (77), Expect = 2.5, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354
+P E T V P+ K + +I E G K M+ RE A KL E H KPF
Sbjct: 1 MPVERTFVMIKPDGVKRGLVGEIIARF-ERKGLKIKALKMKWLTREEAEKLYEVHRGKPF 59
Query: 355 FE 356
FE
Sbjct: 60 FE 61
>sp|Q04505|PRIM_LACLA DNA primase OS=Lactococcus lactis subsp. lactis (strain IL1403)
GN=dnaG PE=3 SV=3
Length = 637
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 79/199 (39%), Gaps = 33/199 (16%)
Query: 69 NRVM---QKRHGHEVVIAFPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLD----DIE 121
NR+M +GH + + W+ KY + + +K E + LD I
Sbjct: 197 NRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSATTIFDKSYE--LWNLDKAKPTIS 254
Query: 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181
+ ++ ++EG MD ++ +AG N V+ +++++K++ +Q
Sbjct: 255 KQHEVYLMEGFMDVIAAYKAGINNVVA---SMGTALTEKHIRRLKQ-------------- 297
Query: 182 KQASRIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGA 241
A + +L DGD GQ + +G V+ P+ D D + G
Sbjct: 298 -MAKKFVLVYDGDSAGQNAIYKAIDLIGESAVQIVKVPEGLDPDEYSKN------YGLKG 350
Query: 242 LKEVVENAELYPIMGLFNF 260
L ++E + PI L ++
Sbjct: 351 LSALMETGRIQPIEFLIDY 369
>sp|B4EZT7|NDK_PROMH Nucleoside diphosphate kinase OS=Proteus mirabilis (strain HI4320)
GN=ndk PE=3 SV=1
Length = 141
Score = 34.3 bits (77), Expect = 2.6, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 306 PNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365
PN+ K I A I N E AG+ V M + RE A E+H +PFF+ G E
Sbjct: 12 PNAVKKNVIGA-IYNRFESAGFSIVAAKMLHLTREQAEGFYEEHKGRPFFD----GLVEF 66
Query: 366 MT 367
MT
Sbjct: 67 MT 68
>sp|Q9RWR5|PRIM_DEIRA DNA primase OS=Deinococcus radiodurans (strain ATCC 13939 / DSM
20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 /
R1 / VKM B-1422) GN=dnaG PE=3 SV=1
Length = 571
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 82 IAFPYWRN-GKLVNCKYR---DFNKKFWQEKDTE-----KVFYGLD----DIEGESDIII 128
+ FP + G+LV R D K+ +T ++ YGLD + G +++++
Sbjct: 174 VMFPIRDHLGRLVGFGGRVLDDSKPKYLNTPETAAFKKGELLYGLDKARSGLGGGAELVV 233
Query: 129 VEGEMDKLSMEEAGFLNCVS 148
VEG MD +SM + GF V+
Sbjct: 234 VEGYMDVISMHQHGFTGAVA 253
>sp|Q8TV10|NDK_METKA Nucleoside diphosphate kinase OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=ndk PE=3 SV=1
Length = 154
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 323 EHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356
E G K V M RE A KL E+H KPFFE
Sbjct: 29 ERKGLKIVALEMRQLDRETAEKLYEEHRDKPFFE 62
>sp|Q66CI3|MSBA_YERPS Lipid A export ATP-binding/permease protein MsbA OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=msbA
PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 11 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 69
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 70 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 124
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 125 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 161
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q1CGH0|MSBA_YERPN Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 11 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 69
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 70 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 124
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 125 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 161
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q8ZGA9|MSBA_YERPE Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 11 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 69
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 70 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 124
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 125 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 161
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|Q1CA68|MSBA_YERPA Lipid A export ATP-binding/permease protein MsbA OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=msbA PE=3 SV=1
Length = 582
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 73/158 (46%), Gaps = 18/158 (11%)
Query: 11 GSTSALVDNNRSQSSLKKFSKMKT-IREITEDSLELEPLGNELRAYFAERLISAETLRRN 69
G T ALV RS S + + T +++E S+ L+ G++LR Y L RN
Sbjct: 369 GKTVALV--GRSGSGKSTIANLLTRFYDVSEGSILLD--GHDLRDYRLGAL-------RN 417
Query: 70 RVM---QKRHGHEVVIA--FPYWRNGKLVNCKYRDFNKKFWQEKDTEKVFYGLDDIEGES 124
+V Q H +A Y RN + + + + + K+ +GLD + GE+
Sbjct: 418 QVALVSQNVHLFNDTVANNIAYARNEQYSRAEIEEAARMAYAMDFINKMEHGLDTVIGEN 477
Query: 125 DIIIVEGEMDKLSMEEAGFLNC-VSVPDGAPSSVSKKN 161
I++ G+ ++++ A NC + + D A S++ ++
Sbjct: 478 GIMLSGGQRQRIAIARALLRNCPILILDEATSALDTES 515
>sp|P37469|DNAC_BACSU Replicative DNA helicase OS=Bacillus subtilis (strain 168) GN=dnaC
PE=1 SV=2
Length = 454
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 120/307 (39%), Gaps = 29/307 (9%)
Query: 241 ALKEVVENAELYPIMGLFNFRDY----FDEIDAYYHRTSGDEFGISTGWRALNELYNVLP 296
A K ++E A+ N +D +D I+ ++R GD GI TG+ L+ +
Sbjct: 143 AEKTIMEVAQRKNTSAFQNIKDVLVQTYDNIEQLHNR-KGDITGIPTGFTELDRMTAGFQ 201
Query: 297 -GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFF 355
+L IV P+ GK+ + + N+ + S+E + ++L
Sbjct: 202 RNDLIIVAARPSVGKTAFALNIAQNVATKTDESVAIFSLEMGAEQLVMRML-------CA 254
Query: 356 EANYGGSAER---MTVEE---FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409
E N R +T E+ LSN+ I D P I+ AK L+
Sbjct: 255 EGNINAQNLRTGNLTEEDWGKLTMAMGSLSNSGIYI----DDTPGIRVSEIRAKCRRLKQ 310
Query: 410 --GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW 466
G+ ++ID + + VS++ +K A+ V ++ R +
Sbjct: 311 ESGLGMILIDYLQLIQGSGRSKDNRQQEVSEISRELKSIARELQVPVIALSQLSRGVEQR 370
Query: 467 VGEPPNLYDISGSAHFINKCDNGIVIHRNR--DPEAGPIDRVQVCVRKVRNKVVGTIGEA 524
+ P + DI S D ++R+ D E + +++ + K RN VGT+ A
Sbjct: 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDYYDKETENKNIIEIIIAKQRNGPVGTVSLA 430
Query: 525 FLS-YNR 530
F+ YN+
Sbjct: 431 FVKEYNK 437
>sp|A8MA86|Y169_CALMQ UPF0095 protein Cmaq_0169 OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=Cmaq_0169
PE=3 SV=1
Length = 452
Score = 32.3 bits (72), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 98 RDFNKKFWQE-KDTEKVFYGLD------DIEGESDIIIVEGEMDKLSMEEAGFLNCVSVP 150
++ KF E K E V YG + D+E +IIVEG D +++ + G+ N +++
Sbjct: 139 KELMDKFLGEVKQGEVVSYGPEGLPAGPDVESSDTVIIVEGRADVVNLIKHGYRNVIAI- 197
Query: 151 DGAPSSVSKKNVPSEEQDTKYQYL---WNCKMYLKQASRIILATDGD-----PPGQALAE 202
+GA + K + + T + +M L++ ++ D D PPG+ + +
Sbjct: 198 EGASGGIPKTVIELSRRKTTIAFTDGDRGGEMILRELLKV---ADIDYIARAPPGKEVEQ 254
Query: 203 ELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYP 253
A+ + + R + P + ++ + ++ K+ +E A++ P
Sbjct: 255 LTAKEIA--KALRNKIPVEEYINQLSKKDRQIIEES----KKQIEQAQVQP 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,252,535
Number of Sequences: 539616
Number of extensions: 9587396
Number of successful extensions: 23859
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 23835
Number of HSP's gapped (non-prelim): 42
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)