Query 009230
Match_columns 539
No_of_seqs 318 out of 2579
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 22:01:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08006 replicative DNA helic 100.0 2.8E-46 6.2E-51 386.9 30.0 266 263-538 189-463 (471)
2 PRK08840 replicative DNA helic 100.0 7.8E-46 1.7E-50 382.9 30.1 265 264-538 183-456 (464)
3 PRK07004 replicative DNA helic 100.0 1.3E-45 2.9E-50 382.3 31.0 253 276-538 191-451 (460)
4 PRK05636 replicative DNA helic 100.0 1.4E-45 3.1E-50 383.6 30.4 264 264-538 232-502 (505)
5 COG0305 DnaB Replicative DNA h 100.0 1.3E-45 2.8E-50 368.8 26.9 266 261-538 161-433 (435)
6 PRK08760 replicative DNA helic 100.0 2.6E-45 5.7E-50 381.2 28.7 266 262-538 194-467 (476)
7 PRK06321 replicative DNA helic 100.0 9.7E-45 2.1E-49 375.0 31.6 253 276-538 204-465 (472)
8 PRK06749 replicative DNA helic 100.0 9.9E-45 2.1E-49 372.0 30.7 270 259-537 147-426 (428)
9 PF03796 DnaB_C: DnaB-like hel 100.0 2.7E-45 5.8E-50 356.6 24.5 249 280-538 1-257 (259)
10 PRK06904 replicative DNA helic 100.0 2.3E-44 5E-49 373.2 32.0 255 275-538 198-462 (472)
11 PRK05595 replicative DNA helic 100.0 1.3E-44 2.7E-49 376.5 29.4 265 263-538 167-438 (444)
12 PRK08506 replicative DNA helic 100.0 3.4E-44 7.4E-49 373.5 29.0 252 276-538 170-451 (472)
13 PRK09165 replicative DNA helic 100.0 3.4E-44 7.3E-49 375.4 29.0 254 275-538 194-487 (497)
14 PHA02542 41 41 helicase; Provi 100.0 1.1E-43 2.3E-48 366.8 29.3 267 260-538 151-428 (473)
15 TIGR00665 DnaB replicative DNA 100.0 2.2E-43 4.8E-48 368.4 30.1 266 263-539 161-433 (434)
16 KOG2373 Predicted mitochondria 100.0 6.3E-44 1.4E-48 334.5 22.6 436 58-537 39-495 (514)
17 PRK05748 replicative DNA helic 100.0 3E-43 6.6E-48 367.2 29.1 265 264-539 170-443 (448)
18 TIGR03600 phage_DnaB phage rep 100.0 2.8E-42 6.2E-47 358.0 30.4 284 227-521 122-417 (421)
19 cd01122 GP4d_helicase GP4d_hel 100.0 3.1E-36 6.7E-41 295.7 27.8 254 278-537 10-270 (271)
20 cd00984 DnaB_C DnaB helicase C 100.0 2.6E-36 5.5E-41 291.4 26.4 234 287-530 2-242 (242)
21 PRK07773 replicative DNA helic 100.0 7E-32 1.5E-36 301.6 26.3 219 263-489 183-406 (886)
22 TIGR01391 dnaG DNA primase, ca 100.0 8.4E-28 1.8E-32 246.7 17.9 181 46-251 131-363 (415)
23 PRK05667 dnaG DNA primase; Val 99.9 3E-27 6.4E-32 250.2 17.7 182 46-252 127-363 (580)
24 TIGR00646 MG010 DNA primase-re 99.9 1.8E-26 3.9E-31 209.1 17.6 175 50-249 28-215 (218)
25 PHA02540 61 DNA primase; Provi 99.9 4.8E-25 1E-29 214.8 13.9 175 47-251 125-322 (337)
26 COG1066 Sms Predicted ATP-depe 99.9 3.3E-23 7.1E-28 201.5 20.8 200 276-528 70-272 (456)
27 PRK05973 replicative DNA helic 99.9 6.4E-23 1.4E-27 192.5 16.9 170 286-494 52-223 (237)
28 COG0358 DnaG DNA primase (bact 99.9 2.7E-23 5.8E-28 222.3 15.2 220 1-249 57-352 (568)
29 cd01121 Sms Sms (bacterial rad 99.9 4E-22 8.7E-27 200.6 22.6 197 277-525 60-259 (372)
30 TIGR03878 thermo_KaiC_2 KaiC d 99.9 8.6E-22 1.9E-26 190.5 22.8 209 279-518 2-237 (259)
31 TIGR00416 sms DNA repair prote 99.9 2.7E-21 5.9E-26 200.2 23.5 200 276-527 71-273 (454)
32 PRK11823 DNA repair protein Ra 99.9 3.2E-21 6.9E-26 199.7 22.9 199 276-526 57-258 (446)
33 TIGR03877 thermo_KaiC_1 KaiC d 99.9 6.1E-21 1.3E-25 182.7 22.1 212 280-520 2-217 (237)
34 PHA02415 DNA primase domain-co 99.9 2.8E-21 6.1E-26 200.3 15.4 190 49-257 121-359 (930)
35 PRK04328 hypothetical protein; 99.9 7.9E-20 1.7E-24 175.9 22.6 214 279-520 3-219 (249)
36 PF06745 KaiC: KaiC; InterPro 99.9 2.8E-20 6.1E-25 177.4 18.9 199 281-519 1-207 (226)
37 cd01393 recA_like RecA is a b 99.9 4.7E-20 1E-24 176.0 19.9 206 281-521 1-224 (226)
38 PHA02031 putative DnaG-like pr 99.8 7E-21 1.5E-25 176.7 12.8 163 50-243 88-261 (266)
39 cd01394 radB RadB. The archaea 99.8 2.2E-19 4.7E-24 170.3 22.2 197 281-521 1-207 (218)
40 PRK09361 radB DNA repair and r 99.8 1.4E-19 3.1E-24 172.3 21.0 197 280-521 4-211 (225)
41 TIGR03881 KaiC_arch_4 KaiC dom 99.8 4.2E-19 9E-24 169.7 22.9 198 281-519 2-211 (229)
42 PLN03187 meiotic recombination 99.8 1.6E-18 3.5E-23 171.8 23.9 239 239-521 74-330 (344)
43 TIGR02238 recomb_DMC1 meiotic 99.8 1.6E-18 3.5E-23 170.9 22.1 239 239-521 44-301 (313)
44 cd00983 recA RecA is a bacter 99.8 2E-18 4.4E-23 169.0 22.0 219 276-531 31-263 (325)
45 TIGR02012 tigrfam_recA protein 99.8 9.9E-19 2.1E-23 171.2 18.3 218 277-531 32-263 (321)
46 TIGR02655 circ_KaiC circadian 99.8 2.4E-18 5.2E-23 181.2 21.5 203 277-518 241-445 (484)
47 PRK09354 recA recombinase A; P 99.8 4.3E-18 9.3E-23 167.9 21.4 221 277-534 37-271 (349)
48 PRK09302 circadian clock prote 99.8 2.3E-18 5E-23 183.4 21.1 206 276-518 8-222 (509)
49 PF13481 AAA_25: AAA domain; P 99.8 9.4E-19 2E-23 162.7 15.6 167 278-462 11-190 (193)
50 PLN03186 DNA repair protein RA 99.8 7.6E-18 1.6E-22 167.4 22.0 210 276-520 100-327 (342)
51 TIGR02239 recomb_RAD51 DNA rep 99.8 8.9E-18 1.9E-22 166.3 22.2 206 276-520 73-301 (316)
52 TIGR03880 KaiC_arch_3 KaiC dom 99.8 6.8E-18 1.5E-22 160.6 19.7 197 284-518 1-201 (224)
53 cd01123 Rad51_DMC1_radA Rad51_ 99.8 6.4E-18 1.4E-22 162.2 18.9 208 281-519 1-223 (235)
54 TIGR02237 recomb_radB DNA repa 99.8 2E-17 4.4E-22 155.7 21.4 192 288-521 1-198 (209)
55 PTZ00035 Rad51 protein; Provis 99.8 2.8E-17 6.1E-22 164.0 22.3 238 240-521 67-323 (337)
56 PRK08624 hypothetical protein; 99.8 2.7E-18 6E-23 167.4 14.1 125 58-202 160-311 (373)
57 PRK04301 radA DNA repair and r 99.8 6.4E-17 1.4E-21 161.7 24.4 211 277-521 80-305 (317)
58 PF08423 Rad51: Rad51; InterP 99.8 1.6E-17 3.4E-22 160.0 18.6 211 277-521 16-243 (256)
59 TIGR02236 recomb_radA DNA repa 99.8 1E-16 2.2E-21 160.0 24.7 212 276-521 72-299 (310)
60 TIGR02655 circ_KaiC circadian 99.7 8.1E-17 1.7E-21 169.6 21.4 201 280-517 2-211 (484)
61 PRK09302 circadian clock prote 99.7 7.3E-17 1.6E-21 171.9 21.2 202 277-517 251-454 (509)
62 PRK06067 flagellar accessory p 99.7 1.2E-16 2.6E-21 153.1 19.8 200 277-518 3-208 (234)
63 cd01125 repA Hexameric Replica 99.7 3.9E-16 8.4E-21 150.0 17.8 182 297-498 1-194 (239)
64 cd01124 KaiC KaiC is a circadi 99.7 1.5E-15 3.3E-20 140.4 18.8 179 299-518 1-185 (187)
65 PRK08533 flagellar accessory p 99.7 3.1E-15 6.7E-20 142.1 21.1 213 280-533 5-221 (230)
66 COG0467 RAD55 RecA-superfamily 99.7 6E-15 1.3E-19 143.6 21.1 208 279-516 3-213 (260)
67 PRK09519 recA DNA recombinatio 99.7 6.6E-15 1.4E-19 158.5 22.4 217 276-534 36-266 (790)
68 COG0468 RecA RecA/RadA recombi 99.6 4.2E-14 9.2E-19 135.6 22.1 217 276-531 37-264 (279)
69 PF00154 RecA: recA bacterial 99.6 2.3E-14 5E-19 140.0 19.9 218 276-530 29-260 (322)
70 PF13155 Toprim_2: Toprim-like 99.5 1.5E-14 3.2E-19 118.1 6.9 85 127-234 1-96 (96)
71 cd01120 RecA-like_NTPases RecA 99.5 6.3E-13 1.4E-17 119.7 14.5 163 299-494 1-165 (165)
72 COG2874 FlaH Predicted ATPases 99.5 2.5E-12 5.4E-17 115.4 16.9 212 280-533 9-226 (235)
73 PRK07078 hypothetical protein; 99.4 8.9E-13 1.9E-17 143.4 13.1 138 80-237 134-287 (759)
74 COG3598 RepA RecA-family ATPas 99.4 1.5E-11 3.3E-16 116.3 17.1 149 294-463 86-244 (402)
75 cd03364 TOPRIM_DnaG_primases T 99.4 2.3E-12 5E-17 100.7 9.2 74 124-216 1-77 (79)
76 KOG1564 DNA repair protein RHP 99.3 8.5E-12 1.8E-16 115.7 9.4 166 279-462 82-265 (351)
77 PF13362 Toprim_3: Toprim doma 99.2 3.7E-11 8.1E-16 97.8 9.3 91 125-240 1-96 (96)
78 PF13662 Toprim_4: Toprim doma 99.2 2.8E-11 6E-16 95.1 7.2 71 124-210 1-72 (81)
79 KOG1434 Meiotic recombination 99.2 4.5E-11 9.7E-16 109.3 9.3 193 276-496 92-302 (335)
80 TIGR02760 TraI_TIGR conjugativ 99.2 1.3E-10 2.7E-15 139.3 15.3 178 35-250 1672-1877(1960)
81 cd01029 TOPRIM_primases TOPRIM 99.1 2.1E-10 4.5E-15 89.8 8.5 68 124-210 1-69 (79)
82 PF07088 GvpD: GvpD gas vesicl 99.1 9.8E-10 2.1E-14 107.2 13.7 204 294-536 7-211 (484)
83 smart00493 TOPRIM topoisomeras 98.8 1.8E-08 4E-13 78.0 7.3 68 124-210 1-73 (76)
84 PF12965 DUF3854: Domain of un 98.8 5.9E-08 1.3E-12 82.7 10.5 112 123-242 10-130 (130)
85 cd01027 TOPRIM_RNase_M5_like T 98.6 2E-07 4.3E-12 72.5 7.8 68 124-210 2-71 (81)
86 PRK04031 DNA primase; Provisio 98.6 2.3E-07 5E-12 91.8 9.6 98 122-251 168-265 (408)
87 PRK04296 thymidine kinase; Pro 98.6 3.9E-07 8.4E-12 84.1 10.6 140 297-496 2-143 (190)
88 COG1120 FepC ABC-type cobalami 98.5 8.5E-07 1.8E-11 84.2 11.9 174 288-496 18-216 (258)
89 PF08275 Toprim_N: DNA primase 98.4 1.5E-07 3.2E-12 80.5 3.7 71 50-120 12-127 (128)
90 KOG1433 DNA repair protein RAD 98.4 3.5E-06 7.5E-11 82.7 13.1 165 276-464 88-259 (326)
91 cd00544 CobU Adenosylcobinamid 98.3 3.5E-06 7.5E-11 75.8 9.8 43 299-345 1-44 (169)
92 PF13401 AAA_22: AAA domain; P 98.3 4.2E-06 9E-11 72.1 9.6 117 296-460 3-125 (131)
93 COG4619 ABC-type uncharacteriz 98.3 2.8E-05 6E-10 67.7 14.0 176 283-494 14-209 (223)
94 COG4604 CeuD ABC-type enteroch 98.3 9.9E-06 2.2E-10 72.4 11.1 155 288-459 17-194 (252)
95 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 5.6E-06 1.2E-10 78.3 9.8 167 286-496 18-216 (254)
96 COG4643 Uncharacterized protei 98.2 3.9E-06 8.4E-11 80.2 8.0 144 80-247 160-311 (366)
97 PF13479 AAA_24: AAA domain 98.2 2.8E-05 6.1E-10 73.2 12.4 146 299-494 5-174 (213)
98 COG1131 CcmA ABC-type multidru 98.1 3.5E-05 7.6E-10 76.1 12.6 176 285-496 18-214 (293)
99 PF05621 TniB: Bacterial TniB 98.1 3.7E-05 7.9E-10 74.4 12.3 119 300-458 64-187 (302)
100 COG1126 GlnQ ABC-type polar am 98.1 5E-05 1.1E-09 69.1 12.4 176 286-495 16-212 (240)
101 COG1136 SalX ABC-type antimicr 98.1 8.1E-05 1.7E-09 69.4 13.8 176 285-494 18-217 (226)
102 KOG2859 DNA repair protein, me 98.1 9.8E-05 2.1E-09 66.8 13.2 161 294-459 35-208 (293)
103 COG1122 CbiO ABC-type cobalt t 98.1 1.9E-05 4.1E-10 74.8 9.2 175 286-496 18-216 (235)
104 PRK05800 cobU adenosylcobinami 98.0 7.7E-05 1.7E-09 67.3 11.9 122 298-459 2-124 (170)
105 cd03115 SRP The signal recogni 98.0 0.00024 5.3E-09 64.4 15.1 38 299-337 2-39 (173)
106 PF00448 SRP54: SRP54-type pro 98.0 0.00027 5.8E-09 65.4 15.3 57 298-356 2-61 (196)
107 PRK12726 flagellar biosynthesi 98.0 7.9E-05 1.7E-09 74.6 12.3 42 294-336 203-244 (407)
108 TIGR01618 phage_P_loop phage n 98.0 0.00015 3.2E-09 67.9 13.4 153 298-496 13-184 (220)
109 smart00382 AAA ATPases associa 98.0 4.5E-05 9.8E-10 65.9 9.5 44 297-341 2-45 (148)
110 cd00188 TOPRIM Topoisomerase-p 98.0 2.9E-05 6.4E-10 60.4 7.3 69 124-209 1-72 (83)
111 COG1124 DppF ABC-type dipeptid 98.0 8.9E-06 1.9E-10 75.4 4.6 62 409-496 158-219 (252)
112 PRK09544 znuC high-affinity zi 97.9 0.00014 3E-09 70.3 12.9 143 294-460 27-180 (251)
113 PRK14722 flhF flagellar biosyn 97.9 0.00028 6E-09 71.3 15.2 64 294-358 134-201 (374)
114 cd03301 ABC_MalK_N The N-termi 97.9 0.00032 6.9E-09 66.0 14.8 60 409-494 147-206 (213)
115 cd03256 ABC_PhnC_transporter A 97.9 7.4E-05 1.6E-09 71.8 10.6 60 409-494 161-220 (241)
116 cd03293 ABC_NrtD_SsuB_transpor 97.9 0.00039 8.4E-09 65.8 15.1 60 409-494 148-207 (220)
117 PRK13634 cbiO cobalt transport 97.9 0.00016 3.4E-09 71.6 12.7 61 409-495 162-222 (290)
118 COG1127 Ttg2A ABC-type transpo 97.9 0.0002 4.3E-09 66.4 12.2 178 288-496 24-223 (263)
119 cd03237 ABC_RNaseL_inhibitor_d 97.9 0.00032 6.8E-09 67.6 14.4 61 408-494 131-191 (246)
120 TIGR01184 ntrCD nitrate transp 97.9 0.00043 9.4E-09 66.0 15.3 63 408-496 130-192 (230)
121 cd03214 ABC_Iron-Siderophores_ 97.9 0.00032 6.8E-09 64.2 13.7 153 288-494 15-173 (180)
122 cd03259 ABC_Carb_Solutes_like 97.9 0.00044 9.6E-09 65.1 15.1 60 409-494 147-206 (213)
123 TIGR01277 thiQ thiamine ABC tr 97.9 0.00029 6.3E-09 66.3 13.8 60 409-494 145-204 (213)
124 PRK11308 dppF dipeptide transp 97.9 0.00036 7.8E-09 70.1 15.0 45 408-460 170-214 (327)
125 cd03261 ABC_Org_Solvent_Resist 97.9 0.00027 5.8E-09 67.7 13.5 60 409-494 153-212 (235)
126 TIGR02770 nickel_nikD nickel i 97.9 0.00014 3E-09 69.4 11.5 61 408-494 141-201 (230)
127 cd03216 ABC_Carb_Monos_I This 97.8 8.1E-05 1.7E-09 66.9 8.8 33 288-320 16-49 (163)
128 KOG0061 Transporter, ABC super 97.8 0.00014 3.1E-09 79.0 12.3 162 288-461 46-231 (613)
129 cd03229 ABC_Class3 This class 97.8 0.00013 2.9E-09 66.5 10.3 61 408-494 116-176 (178)
130 PRK10867 signal recognition pa 97.8 0.00052 1.1E-08 70.9 15.6 58 298-355 101-160 (433)
131 cd03298 ABC_ThiQ_thiamine_tran 97.8 0.00029 6.3E-09 66.2 12.8 60 409-494 145-204 (211)
132 cd03267 ABC_NatA_like Similar 97.8 0.00045 9.8E-09 66.2 14.4 61 408-494 169-229 (236)
133 PRK13646 cbiO cobalt transport 97.8 0.00019 4.1E-09 70.8 12.0 34 287-320 22-56 (286)
134 cd03265 ABC_DrrA DrrA is the A 97.8 0.00039 8.5E-09 65.8 13.7 61 408-494 147-207 (220)
135 COG4107 PhnK ABC-type phosphon 97.8 0.00037 8E-09 61.1 12.0 155 294-459 29-210 (258)
136 PRK15079 oligopeptide ABC tran 97.8 0.00059 1.3E-08 68.6 15.6 34 287-320 36-70 (331)
137 TIGR02315 ABC_phnC phosphonate 97.8 0.00015 3.3E-09 69.7 10.8 60 409-494 162-221 (243)
138 PRK15112 antimicrobial peptide 97.8 0.00038 8.2E-09 68.0 13.7 61 408-494 165-225 (267)
139 PRK11153 metN DL-methionine tr 97.8 0.00059 1.3E-08 69.1 15.3 45 408-460 156-200 (343)
140 PRK11889 flhF flagellar biosyn 97.8 0.00033 7.1E-09 70.5 13.0 38 298-336 242-279 (436)
141 cd03258 ABC_MetN_methionine_tr 97.8 0.00074 1.6E-08 64.5 15.3 61 408-494 156-216 (233)
142 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.8 0.00043 9.3E-09 65.7 13.5 33 288-320 38-71 (224)
143 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 0.00072 1.6E-08 64.8 15.1 60 408-494 148-207 (236)
144 PRK12724 flagellar biosynthesi 97.8 0.00038 8.3E-09 70.9 13.5 42 295-336 221-262 (432)
145 TIGR00959 ffh signal recogniti 97.8 0.00069 1.5E-08 70.0 15.6 40 298-337 100-139 (428)
146 PRK11247 ssuB aliphatic sulfon 97.8 0.00047 1E-08 66.9 13.7 33 288-320 28-61 (257)
147 cd03215 ABC_Carb_Monos_II This 97.8 0.0003 6.4E-09 64.5 11.7 34 287-320 15-49 (182)
148 cd03230 ABC_DR_subfamily_A Thi 97.8 0.00026 5.7E-09 64.2 11.2 33 288-320 16-49 (173)
149 cd03226 ABC_cobalt_CbiO_domain 97.8 0.00064 1.4E-08 63.6 14.1 33 288-320 16-49 (205)
150 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00031 6.7E-09 63.8 11.4 132 288-494 16-147 (177)
151 cd03238 ABC_UvrA The excision 97.8 0.00067 1.5E-08 61.5 13.6 31 288-318 11-42 (176)
152 PRK09536 btuD corrinoid ABC tr 97.8 0.00028 6.1E-09 72.6 12.5 33 288-320 19-52 (402)
153 COG3638 ABC-type phosphate/pho 97.8 0.00035 7.6E-09 64.6 11.6 183 281-496 13-225 (258)
154 PRK11022 dppD dipeptide transp 97.8 0.0011 2.3E-08 66.7 16.3 35 286-320 21-56 (326)
155 cd03225 ABC_cobalt_CbiO_domain 97.8 0.00036 7.7E-09 65.6 12.2 33 288-320 17-50 (211)
156 cd03219 ABC_Mj1267_LivG_branch 97.8 0.00087 1.9E-08 64.2 15.0 33 288-320 16-49 (236)
157 PRK10247 putative ABC transpor 97.7 0.0011 2.3E-08 63.0 15.4 62 408-496 153-214 (225)
158 PRK13636 cbiO cobalt transport 97.7 0.00061 1.3E-08 67.1 14.1 62 408-495 157-218 (283)
159 TIGR00968 3a0106s01 sulfate AB 97.7 0.00024 5.3E-09 68.1 11.0 61 408-494 146-206 (237)
160 PRK14974 cell division protein 97.7 0.001 2.2E-08 66.6 15.6 39 297-336 140-178 (336)
161 cd03269 ABC_putative_ATPase Th 97.7 0.00052 1.1E-08 64.5 13.0 33 288-320 16-49 (210)
162 PRK11248 tauB taurine transpor 97.7 0.001 2.2E-08 64.5 15.4 61 408-494 144-204 (255)
163 TIGR00960 3a0501s02 Type II (G 97.7 0.00078 1.7E-08 63.5 14.2 34 287-320 18-52 (216)
164 cd03257 ABC_NikE_OppD_transpor 97.7 0.001 2.2E-08 63.3 15.0 60 409-494 162-221 (228)
165 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.7 0.00087 1.9E-08 63.3 14.4 34 287-320 19-53 (218)
166 cd03213 ABCG_EPDR ABCG transpo 97.7 0.00044 9.6E-09 64.0 12.1 34 287-320 24-58 (194)
167 PRK13537 nodulation ABC transp 97.7 0.00071 1.5E-08 67.4 14.3 34 287-320 22-56 (306)
168 PF13173 AAA_14: AAA domain 97.7 0.00033 7.1E-09 60.1 10.4 41 297-339 2-42 (128)
169 cd03292 ABC_FtsE_transporter F 97.7 0.001 2.2E-08 62.7 14.7 33 288-320 17-50 (214)
170 cd03300 ABC_PotA_N PotA is an 97.7 0.00075 1.6E-08 64.4 14.0 61 408-494 146-206 (232)
171 COG4608 AppF ABC-type oligopep 97.7 0.00042 9E-09 65.8 11.7 139 285-459 26-168 (268)
172 PRK13637 cbiO cobalt transport 97.7 0.00033 7.1E-09 69.2 11.6 62 408-495 160-221 (287)
173 TIGR03740 galliderm_ABC gallid 97.7 0.0009 1.9E-08 63.5 14.3 27 294-320 23-49 (223)
174 PRK10575 iron-hydroxamate tran 97.7 0.00043 9.3E-09 67.6 12.3 61 408-494 163-223 (265)
175 TIGR02769 nickel_nikE nickel i 97.7 0.00076 1.6E-08 65.8 13.9 60 409-494 167-226 (265)
176 PRK11432 fbpC ferric transport 97.7 0.00033 7.1E-09 71.0 11.6 33 287-319 21-54 (351)
177 PRK10771 thiQ thiamine transpo 97.7 0.00066 1.4E-08 64.8 13.2 61 408-494 145-205 (232)
178 cd03295 ABC_OpuCA_Osmoprotecti 97.7 0.0012 2.5E-08 63.6 15.0 60 409-494 152-211 (242)
179 cd03262 ABC_HisP_GlnQ_permease 97.7 0.0011 2.4E-08 62.3 14.5 27 294-320 23-49 (213)
180 PRK13645 cbiO cobalt transport 97.7 0.0011 2.5E-08 65.4 15.3 34 287-320 26-60 (289)
181 PRK10418 nikD nickel transport 97.7 0.00099 2.2E-08 64.6 14.5 61 408-494 156-216 (254)
182 PRK13633 cobalt transporter AT 97.7 0.00056 1.2E-08 67.3 12.9 34 287-320 25-59 (280)
183 PRK10419 nikE nickel transport 97.7 0.0013 2.8E-08 64.3 15.4 61 408-494 167-227 (268)
184 TIGR00064 ftsY signal recognit 97.7 0.0014 3E-08 64.0 15.3 41 295-336 70-110 (272)
185 PRK09473 oppD oligopeptide tra 97.7 0.0011 2.3E-08 66.8 15.0 44 408-459 177-220 (330)
186 PRK11650 ugpC glycerol-3-phosp 97.7 0.00084 1.8E-08 68.2 14.4 34 287-320 19-53 (356)
187 PRK13652 cbiO cobalt transport 97.7 0.00075 1.6E-08 66.3 13.7 62 408-495 153-214 (277)
188 cd03266 ABC_NatA_sodium_export 97.7 0.00093 2E-08 63.1 13.9 33 288-320 21-54 (218)
189 COG3840 ThiQ ABC-type thiamine 97.7 0.00026 5.5E-09 62.7 9.0 163 294-496 22-207 (231)
190 TIGR01425 SRP54_euk signal rec 97.7 0.00068 1.5E-08 69.7 13.5 38 298-336 101-138 (429)
191 PRK14250 phosphate ABC transpo 97.7 0.0011 2.3E-08 63.8 14.3 61 408-494 147-207 (241)
192 cd03296 ABC_CysA_sulfate_impor 97.7 0.0011 2.4E-08 63.6 14.3 60 409-494 153-212 (239)
193 PRK09452 potA putrescine/sperm 97.7 0.00014 3E-09 74.3 8.5 44 409-460 161-204 (375)
194 TIGR03265 PhnT2 putative 2-ami 97.7 0.0012 2.5E-08 67.1 15.1 33 288-320 20-53 (353)
195 TIGR03258 PhnT 2-aminoethylpho 97.7 0.0011 2.5E-08 67.3 15.0 33 287-319 20-53 (362)
196 TIGR01188 drrA daunorubicin re 97.7 0.00071 1.5E-08 67.3 13.3 33 287-319 8-41 (302)
197 TIGR03499 FlhF flagellar biosy 97.7 0.00036 7.8E-09 68.6 10.9 43 294-336 191-234 (282)
198 cd03294 ABC_Pro_Gly_Bertaine T 97.7 0.0014 3E-08 64.2 15.0 61 408-494 176-236 (269)
199 PRK13648 cbiO cobalt transport 97.7 0.00049 1.1E-08 67.3 11.8 33 288-320 25-58 (269)
200 PRK11701 phnK phosphonate C-P 97.6 0.00094 2E-08 64.9 13.7 61 408-494 167-227 (258)
201 cd03268 ABC_BcrA_bacitracin_re 97.6 0.0012 2.6E-08 61.9 14.0 34 287-320 15-49 (208)
202 PRK10908 cell division protein 97.6 0.0014 3.1E-08 62.0 14.6 33 288-320 18-51 (222)
203 TIGR01288 nodI ATP-binding ABC 97.6 0.0011 2.3E-08 66.1 14.3 34 287-320 19-53 (303)
204 PRK13651 cobalt transporter AT 97.6 0.00055 1.2E-08 68.1 12.1 35 286-320 21-56 (305)
205 COG4559 ABC-type hemin transpo 97.6 0.0017 3.7E-08 59.1 13.9 173 288-496 17-218 (259)
206 PRK13635 cbiO cobalt transport 97.6 0.00052 1.1E-08 67.5 11.8 45 408-460 156-200 (279)
207 PRK10619 histidine/lysine/argi 97.6 0.0014 2.9E-08 63.7 14.6 33 288-320 21-54 (257)
208 cd03235 ABC_Metallic_Cations A 97.6 0.00079 1.7E-08 63.4 12.6 33 288-320 15-48 (213)
209 cd03299 ABC_ModC_like Archeal 97.6 0.0013 2.9E-08 62.8 14.3 62 407-494 144-205 (235)
210 PRK13536 nodulation factor exp 97.6 0.0012 2.5E-08 66.8 14.4 34 287-320 56-90 (340)
211 COG1134 TagH ABC-type polysacc 97.6 0.00035 7.6E-09 65.1 9.6 170 284-496 39-224 (249)
212 TIGR02673 FtsE cell division A 97.6 0.0017 3.7E-08 61.1 14.7 33 288-320 18-51 (214)
213 PRK11000 maltose/maltodextrin 97.6 0.0013 2.8E-08 67.3 14.9 32 288-319 19-51 (369)
214 COG4555 NatA ABC-type Na+ tran 97.6 0.0012 2.7E-08 59.5 12.6 50 285-335 15-65 (245)
215 PRK13643 cbiO cobalt transport 97.6 0.00051 1.1E-08 67.8 11.4 34 287-320 21-55 (288)
216 TIGR03005 ectoine_ehuA ectoine 97.6 0.0014 3.1E-08 63.3 14.4 61 408-494 162-222 (252)
217 COG1123 ATPase components of v 97.6 0.00088 1.9E-08 70.1 13.4 178 285-496 304-507 (539)
218 PRK13546 teichoic acids export 97.6 0.00086 1.9E-08 65.3 12.7 35 286-320 38-73 (264)
219 PRK11831 putative ABC transpor 97.6 0.0013 2.8E-08 64.3 14.1 33 288-320 23-56 (269)
220 cd03297 ABC_ModC_molybdenum_tr 97.6 0.0018 4E-08 60.9 14.5 61 408-494 147-207 (214)
221 COG1123 ATPase components of v 97.6 0.0017 3.7E-08 68.0 15.3 65 406-496 168-232 (539)
222 COG0410 LivF ABC-type branched 97.6 0.00057 1.2E-08 63.1 10.4 163 294-496 26-214 (237)
223 PRK05703 flhF flagellar biosyn 97.6 0.0027 5.7E-08 66.0 16.8 42 295-336 219-261 (424)
224 COG1110 Reverse gyrase [DNA re 97.6 0.0005 1.1E-08 75.4 11.6 123 294-426 94-219 (1187)
225 COG4586 ABC-type uncharacteriz 97.6 0.0014 3.1E-08 61.8 13.1 174 294-496 47-234 (325)
226 PRK10584 putative ABC transpor 97.6 0.0021 4.6E-08 61.1 15.0 33 288-320 26-59 (228)
227 TIGR03771 anch_rpt_ABC anchore 97.6 0.0017 3.7E-08 61.6 14.2 27 294-320 3-29 (223)
228 cd00009 AAA The AAA+ (ATPases 97.6 0.00065 1.4E-08 59.1 10.6 40 296-336 18-57 (151)
229 PRK13545 tagH teichoic acids e 97.6 0.001 2.2E-08 69.8 13.6 33 288-320 40-73 (549)
230 TIGR02142 modC_ABC molybdenum 97.6 0.0016 3.6E-08 66.2 15.0 44 409-460 148-191 (354)
231 cd03233 ABC_PDR_domain1 The pl 97.6 0.00081 1.7E-08 62.7 11.7 35 287-321 22-57 (202)
232 PRK13641 cbiO cobalt transport 97.6 0.0015 3.2E-08 64.6 14.2 33 287-319 22-55 (287)
233 PRK11629 lolD lipoprotein tran 97.6 0.0021 4.5E-08 61.4 14.9 34 287-320 24-58 (233)
234 TIGR02314 ABC_MetN D-methionin 97.6 0.0017 3.7E-08 65.5 14.8 44 409-460 157-200 (343)
235 PRK11300 livG leucine/isoleuci 97.6 0.00076 1.7E-08 65.4 12.0 62 408-495 169-230 (255)
236 TIGR02323 CP_lyasePhnK phospho 97.6 0.00096 2.1E-08 64.6 12.7 61 408-494 164-224 (253)
237 PRK11607 potG putrescine trans 97.6 0.0019 4.2E-08 66.1 15.3 33 287-319 34-67 (377)
238 PRK11264 putative amino-acid A 97.6 0.0016 3.4E-08 63.0 14.1 33 288-320 19-52 (250)
239 cd03218 ABC_YhbG The ABC trans 97.6 0.00073 1.6E-08 64.5 11.5 33 288-320 16-49 (232)
240 PRK11144 modC molybdate transp 97.6 0.0017 3.6E-08 66.1 14.6 44 409-460 145-188 (352)
241 PRK13548 hmuV hemin importer A 97.6 0.00058 1.3E-08 66.3 10.9 61 409-495 157-217 (258)
242 PRK10851 sulfate/thiosulfate t 97.6 0.00084 1.8E-08 68.1 12.3 34 287-320 17-51 (353)
243 COG1125 OpuBA ABC-type proline 97.6 0.0025 5.4E-08 59.7 14.1 164 284-459 13-194 (309)
244 COG1117 PstB ABC-type phosphat 97.6 0.0016 3.5E-08 59.3 12.6 32 287-318 22-54 (253)
245 PRK09984 phosphonate/organopho 97.6 0.0019 4.2E-08 62.8 14.4 60 409-494 169-228 (262)
246 PRK10416 signal recognition pa 97.6 0.0018 3.9E-08 64.5 14.3 41 295-336 112-152 (318)
247 PRK10070 glycine betaine trans 97.6 0.0024 5.3E-08 65.7 15.6 33 288-320 44-77 (400)
248 PRK13647 cbiO cobalt transport 97.5 0.0007 1.5E-08 66.4 11.3 33 287-319 20-53 (274)
249 PRK12377 putative replication 97.5 0.00075 1.6E-08 64.6 11.1 37 298-335 102-138 (248)
250 PRK10253 iron-enterobactin tra 97.5 0.00045 9.8E-09 67.4 9.8 33 288-320 23-56 (265)
251 PRK08181 transposase; Validate 97.5 0.00091 2E-08 64.9 11.7 47 294-345 103-149 (269)
252 cd03234 ABCG_White The White s 97.5 0.00092 2E-08 63.5 11.6 35 287-321 22-57 (226)
253 cd03217 ABC_FeS_Assembly ABC-t 97.5 0.00072 1.6E-08 62.9 10.6 33 288-320 16-49 (200)
254 TIGR03410 urea_trans_UrtE urea 97.5 0.00086 1.9E-08 63.9 11.4 62 408-495 147-208 (230)
255 COG3854 SpoIIIAA ncharacterize 97.5 0.00064 1.4E-08 62.5 9.6 131 294-478 133-269 (308)
256 cd03260 ABC_PstB_phosphate_tra 97.5 0.0018 4E-08 61.5 13.4 34 288-321 16-50 (227)
257 PRK15093 antimicrobial peptide 97.5 0.001 2.2E-08 67.0 12.2 45 408-460 174-218 (330)
258 PRK13638 cbiO cobalt transport 97.5 0.0018 3.8E-08 63.5 13.5 33 288-320 17-50 (271)
259 TIGR03873 F420-0_ABC_ATP propo 97.5 0.0007 1.5E-08 65.7 10.5 33 288-320 17-50 (256)
260 PRK09493 glnQ glutamine ABC tr 97.5 0.002 4.3E-08 61.8 13.6 33 288-320 17-50 (240)
261 cd03263 ABC_subfamily_A The AB 97.5 0.0023 4.9E-08 60.6 13.8 33 288-320 18-51 (220)
262 PRK10261 glutathione transport 97.5 0.0012 2.5E-08 72.7 13.3 36 286-321 30-66 (623)
263 PRK13639 cbiO cobalt transport 97.5 0.00073 1.6E-08 66.3 10.7 33 287-319 17-50 (275)
264 TIGR02211 LolD_lipo_ex lipopro 97.5 0.0031 6.7E-08 59.6 14.7 34 287-320 20-54 (221)
265 PRK13649 cbiO cobalt transport 97.5 0.0016 3.4E-08 64.2 13.0 34 287-320 22-56 (280)
266 TIGR01978 sufC FeS assembly AT 97.5 0.0049 1.1E-07 59.2 16.2 33 288-320 16-49 (243)
267 PRK13650 cbiO cobalt transport 97.5 0.00075 1.6E-08 66.3 10.7 45 408-460 156-200 (279)
268 PRK15134 microcin C ABC transp 97.5 0.0015 3.2E-08 70.6 13.8 35 287-321 24-59 (529)
269 cd03251 ABCC_MsbA MsbA is an e 97.5 0.0008 1.7E-08 64.3 10.6 34 288-321 18-52 (234)
270 cd03224 ABC_TM1139_LivF_branch 97.5 0.0011 2.3E-08 62.8 11.4 33 287-319 15-48 (222)
271 cd03283 ABC_MutS-like MutS-lik 97.5 0.002 4.4E-08 59.8 12.9 36 294-329 22-58 (199)
272 PRK00771 signal recognition pa 97.5 0.0054 1.2E-07 63.6 17.2 40 297-337 95-134 (437)
273 PRK13409 putative ATPase RIL; 97.5 0.0017 3.7E-08 70.5 14.2 61 408-494 469-529 (590)
274 PRK10938 putative molybdenum t 97.5 0.0016 3.5E-08 69.6 13.9 34 287-320 18-52 (490)
275 PRK13631 cbiO cobalt transport 97.5 0.0011 2.4E-08 66.3 11.8 34 287-320 41-75 (320)
276 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00092 2E-08 59.6 10.1 26 294-319 22-47 (157)
277 COG1118 CysA ABC-type sulfate/ 97.5 0.0012 2.5E-08 63.6 11.0 35 284-318 14-49 (345)
278 PRK12727 flagellar biosynthesi 97.5 0.0068 1.5E-07 63.6 17.6 43 294-336 347-390 (559)
279 PRK11614 livF leucine/isoleuci 97.5 0.00062 1.3E-08 65.2 9.5 34 287-320 20-54 (237)
280 PF00004 AAA: ATPase family as 97.5 0.00067 1.5E-08 58.2 8.7 32 300-335 1-32 (132)
281 cd03232 ABC_PDR_domain2 The pl 97.5 0.0024 5.2E-08 59.0 12.9 32 288-319 23-55 (192)
282 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.0012 2.5E-08 63.4 11.2 35 287-321 18-53 (238)
283 PRK11124 artP arginine transpo 97.4 0.0036 7.7E-08 60.2 14.5 27 294-320 25-51 (242)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0016 3.5E-08 57.1 11.0 26 294-319 23-48 (144)
285 TIGR00955 3a01204 The Eye Pigm 97.4 0.0014 3.1E-08 71.8 13.0 34 287-320 40-74 (617)
286 COG4172 ABC-type uncharacteriz 97.4 0.0019 4.2E-08 64.3 12.2 181 285-496 300-504 (534)
287 PRK15177 Vi polysaccharide exp 97.4 0.0027 5.9E-08 59.7 13.1 27 294-320 10-36 (213)
288 TIGR03608 L_ocin_972_ABC putat 97.4 0.0023 5E-08 59.8 12.5 33 288-320 14-47 (206)
289 TIGR03522 GldA_ABC_ATP gliding 97.4 0.0017 3.8E-08 64.5 12.3 34 287-320 17-51 (301)
290 TIGR00750 lao LAO/AO transport 97.4 0.00088 1.9E-08 66.5 10.2 49 288-337 24-73 (300)
291 TIGR01166 cbiO cobalt transpor 97.4 0.0015 3.3E-08 60.2 11.1 32 288-319 8-40 (190)
292 cd03253 ABCC_ATM1_transporter 97.4 0.001 2.2E-08 63.7 10.3 34 288-321 17-51 (236)
293 cd03246 ABCC_Protease_Secretio 97.4 0.0017 3.7E-08 58.9 11.2 27 294-320 25-51 (173)
294 cd03228 ABCC_MRP_Like The MRP 97.4 0.0017 3.7E-08 58.8 11.2 33 288-320 18-51 (171)
295 PF13245 AAA_19: Part of AAA d 97.4 0.00042 9E-09 53.3 6.0 50 296-345 9-62 (76)
296 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.0025 5.5E-08 61.6 12.9 29 294-322 23-51 (255)
297 TIGR03575 selen_PSTK_euk L-ser 97.4 0.0027 5.8E-08 63.5 13.3 38 299-336 1-38 (340)
298 COG0444 DppD ABC-type dipeptid 97.4 0.0037 8.1E-08 60.8 13.7 65 406-496 167-231 (316)
299 PRK13640 cbiO cobalt transport 97.4 0.0017 3.7E-08 64.0 11.8 35 287-321 22-57 (282)
300 TIGR03411 urea_trans_UrtD urea 97.4 0.002 4.4E-08 61.9 11.9 34 287-320 17-51 (242)
301 PRK10895 lipopolysaccharide AB 97.4 0.003 6.5E-08 60.7 13.1 34 288-321 19-53 (241)
302 PRK10261 glutathione transport 97.4 0.003 6.4E-08 69.5 14.7 44 409-460 480-523 (623)
303 PRK14258 phosphate ABC transpo 97.4 0.0071 1.5E-07 58.8 15.7 60 409-494 167-226 (261)
304 PF05729 NACHT: NACHT domain 97.4 0.0018 4E-08 57.8 10.8 26 299-324 2-27 (166)
305 PRK08116 hypothetical protein; 97.4 0.0035 7.6E-08 61.0 13.4 35 299-334 116-150 (268)
306 TIGR01186 proV glycine betaine 97.4 0.0043 9.3E-08 63.1 14.4 34 288-321 9-43 (363)
307 PRK06731 flhF flagellar biosyn 97.4 0.013 2.8E-07 56.8 17.1 41 296-337 74-114 (270)
308 PRK14723 flhF flagellar biosyn 97.4 0.0063 1.4E-07 66.8 16.4 114 294-417 182-302 (767)
309 cd03254 ABCC_Glucan_exporter_l 97.4 0.0016 3.5E-08 62.0 10.8 35 287-321 18-53 (229)
310 cd03248 ABCC_TAP TAP, the Tran 97.4 0.0015 3.2E-08 62.1 10.5 34 287-320 29-63 (226)
311 PRK10744 pstB phosphate transp 97.4 0.0036 7.8E-08 60.9 13.4 33 288-320 29-62 (260)
312 cd03227 ABC_Class2 ABC-type Cl 97.4 0.0038 8.3E-08 55.9 12.6 31 294-324 18-48 (162)
313 PRK13547 hmuV hemin importer A 97.4 0.0041 8.8E-08 60.8 13.8 61 409-495 171-231 (272)
314 PRK14235 phosphate transporter 97.3 0.012 2.6E-07 57.5 17.1 34 288-321 35-69 (267)
315 COG1435 Tdk Thymidine kinase [ 97.3 0.00099 2.2E-08 60.0 8.4 142 296-493 3-144 (201)
316 COG0411 LivG ABC-type branched 97.3 0.0039 8.4E-08 58.2 12.6 183 284-496 16-227 (250)
317 cd03250 ABCC_MRP_domain1 Domai 97.3 0.0029 6.3E-08 59.0 12.1 33 288-320 21-54 (204)
318 PRK14269 phosphate ABC transpo 97.3 0.0053 1.1E-07 59.1 14.2 33 288-320 18-51 (246)
319 PRK07952 DNA replication prote 97.3 0.0037 8.1E-08 59.7 12.8 36 298-334 100-135 (244)
320 COG2401 ABC-type ATPase fused 97.3 0.00095 2.1E-08 66.5 8.7 47 408-462 523-569 (593)
321 PLN03211 ABC transporter G-25; 97.3 0.0021 4.6E-08 70.8 12.5 34 287-320 83-117 (659)
322 PRK03695 vitamin B12-transport 97.3 0.0011 2.4E-08 64.0 9.2 33 288-320 12-45 (248)
323 TIGR03269 met_CoM_red_A2 methy 97.3 0.0085 1.8E-07 64.5 17.0 34 288-321 16-50 (520)
324 COG1419 FlhF Flagellar GTP-bin 97.3 0.0087 1.9E-07 60.3 15.5 77 295-381 201-282 (407)
325 PRK13543 cytochrome c biogenes 97.3 0.01 2.2E-07 55.9 15.5 33 288-320 27-60 (214)
326 TIGR02982 heterocyst_DevA ABC 97.3 0.004 8.7E-08 58.9 12.8 59 409-494 158-216 (220)
327 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.3 6.6E-05 1.4E-09 70.3 0.6 165 280-459 19-201 (205)
328 COG2909 MalT ATP-dependent tra 97.3 0.0018 3.9E-08 70.2 11.3 133 294-461 34-170 (894)
329 PRK14256 phosphate ABC transpo 97.3 0.013 2.9E-07 56.6 16.5 33 288-320 20-53 (252)
330 PRK11231 fecE iron-dicitrate t 97.3 0.0035 7.7E-08 60.7 12.5 33 288-320 18-51 (255)
331 TIGR03269 met_CoM_red_A2 methy 97.3 0.0042 9.2E-08 66.9 14.3 61 408-494 443-503 (520)
332 cd03247 ABCC_cytochrome_bd The 97.3 0.0029 6.3E-08 57.7 11.2 34 288-321 18-52 (178)
333 PRK13539 cytochrome c biogenes 97.3 0.0018 3.9E-08 60.6 10.0 33 288-320 18-51 (207)
334 PRK15134 microcin C ABC transp 97.3 0.0058 1.3E-07 65.9 15.3 61 408-494 441-501 (529)
335 PRK11176 lipid transporter ATP 97.3 0.0031 6.8E-08 68.9 13.5 169 294-495 366-554 (582)
336 PRK13644 cbiO cobalt transport 97.3 0.0048 1E-07 60.5 13.4 34 287-320 17-51 (274)
337 COG3842 PotA ABC-type spermidi 97.3 0.00077 1.7E-08 67.3 7.8 36 284-319 17-53 (352)
338 TIGR01189 ccmA heme ABC export 97.3 0.0058 1.2E-07 56.7 13.3 33 288-320 16-49 (198)
339 COG3839 MalK ABC-type sugar tr 97.3 0.00053 1.1E-08 68.0 6.5 25 294-318 26-50 (338)
340 TIGR00972 3a0107s01c2 phosphat 97.3 0.0027 6E-08 61.2 11.4 33 288-320 17-50 (247)
341 TIGR03415 ABC_choXWV_ATP choli 97.3 0.0028 6.1E-08 64.8 11.8 43 409-459 181-223 (382)
342 PRK13540 cytochrome c biogenes 97.3 0.008 1.7E-07 55.9 14.1 33 288-320 17-50 (200)
343 PRK13642 cbiO cobalt transport 97.3 0.0032 7E-08 61.8 12.0 35 287-321 22-57 (277)
344 PLN03140 ABC transporter G fam 97.3 0.0019 4.2E-08 77.0 12.1 34 287-320 895-929 (1470)
345 PRK15439 autoinducer 2 ABC tra 97.3 0.0018 3.8E-08 69.6 10.9 33 288-320 27-60 (510)
346 cd03264 ABC_drug_resistance_li 97.2 0.0061 1.3E-07 57.2 13.3 32 288-320 16-48 (211)
347 PRK13768 GTPase; Provisional 97.2 0.0028 6.1E-08 61.2 11.2 40 298-338 3-42 (253)
348 PRK06921 hypothetical protein; 97.2 0.0069 1.5E-07 58.9 13.9 38 297-334 117-154 (266)
349 PRK13632 cbiO cobalt transport 97.2 0.0028 6E-08 62.1 11.3 34 287-320 24-58 (271)
350 cd03231 ABC_CcmA_heme_exporter 97.2 0.0055 1.2E-07 57.0 12.8 33 288-320 16-49 (201)
351 cd03252 ABCC_Hemolysin The ABC 97.2 0.0015 3.4E-08 62.5 9.3 34 288-321 18-52 (237)
352 PRK09580 sufC cysteine desulfu 97.2 0.006 1.3E-07 58.8 13.5 33 288-320 17-50 (248)
353 PRK14237 phosphate transporter 97.2 0.017 3.7E-07 56.3 16.8 33 288-320 36-69 (267)
354 PRK14268 phosphate ABC transpo 97.2 0.016 3.4E-07 56.3 16.5 32 288-319 28-60 (258)
355 PRK07773 replicative DNA helic 97.2 0.00041 8.8E-09 79.0 6.1 60 476-538 822-883 (886)
356 PRK14267 phosphate ABC transpo 97.2 0.013 2.9E-07 56.6 15.8 34 287-320 19-53 (253)
357 PRK14242 phosphate transporter 97.2 0.011 2.4E-07 57.2 15.3 32 288-319 22-54 (253)
358 PRK11174 cysteine/glutathione 97.2 0.0033 7.1E-08 68.9 12.9 166 294-494 373-558 (588)
359 PRK14274 phosphate ABC transpo 97.2 0.022 4.8E-07 55.3 17.4 33 288-320 28-61 (259)
360 cd03369 ABCC_NFT1 Domain 2 of 97.2 0.0023 5E-08 59.9 10.1 34 287-320 23-57 (207)
361 PRK14245 phosphate ABC transpo 97.2 0.014 3.1E-07 56.3 15.9 32 288-319 19-51 (250)
362 PRK14247 phosphate ABC transpo 97.2 0.0068 1.5E-07 58.5 13.6 33 288-320 19-52 (250)
363 PRK10762 D-ribose transporter 97.2 0.0031 6.7E-08 67.6 12.3 34 287-320 19-53 (501)
364 PRK14240 phosphate transporter 97.2 0.009 1.9E-07 57.7 14.5 26 294-319 26-51 (250)
365 COG1116 TauB ABC-type nitrate/ 97.2 0.0032 7E-08 59.1 10.5 34 285-318 16-50 (248)
366 TIGR02324 CP_lyasePhnL phospho 97.2 0.0066 1.4E-07 57.5 13.1 33 288-320 24-57 (224)
367 PRK14273 phosphate ABC transpo 97.2 0.017 3.8E-07 55.9 16.0 33 288-320 23-56 (254)
368 PRK14241 phosphate transporter 97.2 0.018 3.8E-07 56.0 16.0 34 287-320 19-53 (258)
369 COG1658 Small primase-like pro 97.2 0.0018 4E-08 54.3 7.7 73 123-210 9-81 (127)
370 PRK14271 phosphate ABC transpo 97.2 0.0069 1.5E-07 59.4 13.2 33 288-320 37-70 (276)
371 PRK14259 phosphate ABC transpo 97.2 0.013 2.8E-07 57.3 15.0 33 288-320 29-62 (269)
372 TIGR00708 cobA cob(I)alamin ad 97.2 0.0068 1.5E-07 54.3 11.8 146 296-496 5-158 (173)
373 PTZ00293 thymidine kinase; Pro 97.2 0.0029 6.2E-08 58.6 9.7 139 295-496 2-140 (211)
374 COG1135 AbcC ABC-type metal io 97.2 0.0098 2.1E-07 57.5 13.4 160 284-459 18-200 (339)
375 PRK12723 flagellar biosynthesi 97.2 0.018 3.8E-07 58.9 16.3 40 297-336 174-216 (388)
376 cd03114 ArgK-like The function 97.2 0.0012 2.6E-08 58.1 6.9 37 300-337 2-38 (148)
377 KOG0065 Pleiotropic drug resis 97.2 0.0039 8.5E-08 71.0 12.4 55 286-346 805-866 (1391)
378 PRK13538 cytochrome c biogenes 97.1 0.01 2.2E-07 55.4 13.6 33 288-320 17-50 (204)
379 PF00308 Bac_DnaA: Bacterial d 97.1 0.0079 1.7E-07 56.8 12.9 37 299-335 36-73 (219)
380 COG0541 Ffh Signal recognition 97.1 0.028 6.2E-07 56.9 17.1 141 298-459 101-248 (451)
381 cd03279 ABC_sbcCD SbcCD and ot 97.1 0.0085 1.8E-07 56.3 12.9 24 295-318 26-49 (213)
382 PRK14262 phosphate ABC transpo 97.1 0.0072 1.6E-07 58.4 12.7 32 288-319 19-51 (250)
383 TIGR00956 3a01205 Pleiotropic 97.1 0.0093 2E-07 71.3 16.0 34 287-320 76-110 (1394)
384 PRK15056 manganese/iron transp 97.1 0.0025 5.4E-08 62.4 9.5 33 288-320 23-56 (272)
385 PRK15439 autoinducer 2 ABC tra 97.1 0.0056 1.2E-07 65.7 13.0 33 288-320 279-312 (510)
386 TIGR00956 3a01205 Pleiotropic 97.1 0.0062 1.4E-07 72.8 14.5 35 287-321 778-813 (1394)
387 PRK14270 phosphate ABC transpo 97.1 0.023 4.9E-07 54.9 16.1 27 294-320 27-53 (251)
388 PRK14244 phosphate ABC transpo 97.1 0.014 3.1E-07 56.3 14.7 34 287-320 20-54 (251)
389 PRK14253 phosphate ABC transpo 97.1 0.0069 1.5E-07 58.5 12.4 33 288-320 19-52 (249)
390 cd03243 ABC_MutS_homologs The 97.1 0.0038 8.3E-08 58.2 10.2 28 294-321 26-53 (202)
391 PRK00411 cdc6 cell division co 97.1 0.0077 1.7E-07 62.4 13.6 50 299-348 57-109 (394)
392 PRK09700 D-allose transporter 97.1 0.0032 6.9E-08 67.6 11.0 33 288-320 21-54 (510)
393 PRK14272 phosphate ABC transpo 97.1 0.031 6.6E-07 54.0 16.8 33 288-320 20-53 (252)
394 PRK06995 flhF flagellar biosyn 97.1 0.023 5E-07 59.5 16.6 61 294-355 253-317 (484)
395 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.021 4.5E-07 50.6 14.0 144 299-493 4-153 (159)
396 PRK14252 phosphate ABC transpo 97.1 0.0072 1.6E-07 58.9 12.3 32 288-319 32-64 (265)
397 PRK14236 phosphate transporter 97.1 0.027 5.9E-07 55.1 16.4 27 294-320 48-74 (272)
398 PRK11288 araG L-arabinose tran 97.1 0.0045 9.7E-08 66.4 11.7 27 294-320 276-302 (501)
399 PRK14260 phosphate ABC transpo 97.1 0.029 6.4E-07 54.4 16.5 33 288-320 23-56 (259)
400 PRK10762 D-ribose transporter 97.1 0.0047 1E-07 66.2 11.9 59 409-494 412-470 (501)
401 TIGR01420 pilT_fam pilus retra 97.1 0.0033 7.1E-08 63.7 10.0 45 294-340 119-163 (343)
402 PRK14257 phosphate ABC transpo 97.1 0.013 2.8E-07 59.0 14.2 33 288-320 98-131 (329)
403 PRK14255 phosphate ABC transpo 97.1 0.026 5.7E-07 54.5 16.0 32 288-319 21-53 (252)
404 PRK09700 D-allose transporter 97.1 0.0035 7.6E-08 67.3 10.8 33 288-320 279-312 (510)
405 PRK14251 phosphate ABC transpo 97.1 0.027 5.8E-07 54.4 16.0 33 288-320 20-53 (251)
406 PRK06835 DNA replication prote 97.1 0.0052 1.1E-07 61.5 11.2 39 296-335 182-220 (329)
407 PRK10636 putative ABC transpor 97.1 0.0062 1.3E-07 67.1 12.8 27 294-320 335-361 (638)
408 PRK14249 phosphate ABC transpo 97.0 0.023 5E-07 54.8 15.5 33 288-320 20-53 (251)
409 PRK13657 cyclic beta-1,2-gluca 97.0 0.0033 7.1E-08 68.8 10.7 26 294-319 358-383 (588)
410 PF01751 Toprim: Toprim domain 97.0 0.0025 5.5E-08 52.0 7.4 81 125-209 1-85 (100)
411 PF02374 ArsA_ATPase: Anion-tr 97.0 0.0026 5.7E-08 63.1 8.9 118 298-418 2-134 (305)
412 PRK11288 araG L-arabinose tran 97.0 0.0053 1.2E-07 65.8 11.9 34 287-320 19-53 (501)
413 PRK14246 phosphate ABC transpo 97.0 0.0075 1.6E-07 58.5 11.9 34 288-321 26-60 (257)
414 PRK14243 phosphate transporter 97.0 0.032 6.8E-07 54.4 16.3 32 288-319 26-58 (264)
415 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0045 9.8E-08 59.7 10.2 36 299-335 1-36 (249)
416 CHL00131 ycf16 sulfate ABC tra 97.0 0.0055 1.2E-07 59.2 10.8 32 288-319 23-55 (252)
417 PF04665 Pox_A32: Poxvirus A32 97.0 0.0026 5.6E-08 60.2 8.1 35 299-335 15-49 (241)
418 KOG0058 Peptide exporter, ABC 97.0 0.0076 1.6E-07 64.6 12.3 173 287-496 483-679 (716)
419 PRK14265 phosphate ABC transpo 97.0 0.023 5E-07 55.7 15.1 31 288-318 36-67 (274)
420 PRK14238 phosphate transporter 97.0 0.018 3.9E-07 56.3 14.4 34 288-321 40-74 (271)
421 cd03244 ABCC_MRP_domain2 Domai 97.0 0.004 8.7E-08 58.9 9.5 34 287-320 19-53 (221)
422 PRK10982 galactose/methyl gala 97.0 0.0041 8.8E-08 66.5 10.6 33 288-320 264-297 (491)
423 PRK00889 adenylylsulfate kinas 97.0 0.0012 2.7E-08 59.9 5.7 40 295-335 2-41 (175)
424 PRK10982 galactose/methyl gala 97.0 0.008 1.7E-07 64.2 12.8 33 288-320 14-47 (491)
425 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0028 6.1E-08 59.0 8.1 30 294-323 26-55 (204)
426 PF09807 DUF2348: Uncharacteri 97.0 0.017 3.6E-07 55.5 13.5 191 285-495 2-211 (249)
427 cd03223 ABCD_peroxisomal_ALDP 97.0 0.014 3E-07 52.5 12.3 33 288-320 17-50 (166)
428 COG2274 SunT ABC-type bacterio 97.0 0.0063 1.4E-07 67.0 11.9 171 294-497 496-685 (709)
429 COG1101 PhnK ABC-type uncharac 97.0 0.012 2.7E-07 53.8 11.6 151 288-460 22-208 (263)
430 PRK14261 phosphate ABC transpo 97.0 0.023 5.1E-07 54.9 14.8 32 288-319 22-54 (253)
431 TIGR03689 pup_AAA proteasome A 97.0 0.0022 4.9E-08 67.5 8.1 33 291-323 210-242 (512)
432 TIGR02633 xylG D-xylose ABC tr 97.0 0.0088 1.9E-07 64.1 12.9 34 287-320 16-50 (500)
433 cd03278 ABC_SMC_barmotin Barmo 97.0 0.0014 3.1E-08 60.7 5.9 35 284-319 8-44 (197)
434 PRK09183 transposase/IS protei 97.0 0.00097 2.1E-08 64.6 5.0 40 294-334 99-138 (259)
435 cd03289 ABCC_CFTR2 The CFTR su 97.0 0.006 1.3E-07 59.7 10.5 35 287-321 19-54 (275)
436 TIGR03797 NHPM_micro_ABC2 NHPM 97.0 0.0065 1.4E-07 67.8 12.1 165 294-494 476-659 (686)
437 PF02456 Adeno_IVa2: Adenoviru 97.0 0.012 2.5E-07 56.7 11.8 151 294-460 85-244 (369)
438 PRK15064 ABC transporter ATP-b 97.0 0.0099 2.1E-07 64.2 13.1 32 288-319 335-367 (530)
439 PRK13549 xylose transporter AT 97.0 0.0068 1.5E-07 65.0 11.8 34 287-320 20-54 (506)
440 COG1132 MdlB ABC-type multidru 96.9 0.014 3.1E-07 63.6 14.3 172 288-496 345-540 (567)
441 PRK14086 dnaA chromosomal repl 96.9 0.0055 1.2E-07 65.6 10.7 38 299-336 316-354 (617)
442 TIGR03375 type_I_sec_LssB type 96.9 0.0044 9.5E-08 69.3 10.6 166 294-495 488-675 (694)
443 TIGR03018 pepcterm_TyrKin exop 96.9 0.0039 8.4E-08 58.4 8.5 42 298-339 36-78 (207)
444 PRK09435 membrane ATPase/prote 96.9 0.0071 1.5E-07 60.4 10.7 41 298-339 57-97 (332)
445 PRK10522 multidrug transporter 96.9 0.0051 1.1E-07 66.7 10.7 167 294-494 346-524 (547)
446 COG4618 ArpD ABC-type protease 96.9 0.0083 1.8E-07 61.6 11.2 26 294-319 359-384 (580)
447 TIGR02204 MsbA_rel ABC transpo 96.9 0.013 2.8E-07 64.1 13.8 29 294-322 363-391 (576)
448 PTZ00454 26S protease regulato 96.9 0.012 2.5E-07 60.6 12.4 28 293-320 175-202 (398)
449 PRK13549 xylose transporter AT 96.9 0.0084 1.8E-07 64.3 11.9 34 287-320 277-311 (506)
450 PRK14721 flhF flagellar biosyn 96.9 0.053 1.2E-06 55.9 17.0 79 294-381 188-270 (420)
451 cd03285 ABC_MSH2_euk MutS2 hom 96.9 0.0025 5.3E-08 60.3 6.8 30 294-323 27-56 (222)
452 PRK14266 phosphate ABC transpo 96.9 0.037 8E-07 53.4 15.2 32 288-319 19-51 (250)
453 PRK13541 cytochrome c biogenes 96.9 0.025 5.4E-07 52.3 13.5 27 294-320 23-49 (195)
454 PRK14275 phosphate ABC transpo 96.9 0.011 2.5E-07 58.2 11.7 32 288-319 55-87 (286)
455 TIGR02868 CydC thiol reductant 96.9 0.011 2.4E-07 63.8 12.6 33 288-320 351-384 (529)
456 PRK10263 DNA translocase FtsK; 96.9 0.009 2E-07 68.3 12.0 44 412-461 1142-1186(1355)
457 PRK14263 phosphate ABC transpo 96.9 0.011 2.3E-07 57.5 11.4 33 288-320 24-57 (261)
458 TIGR01846 type_I_sec_HlyB type 96.9 0.0069 1.5E-07 67.7 11.2 168 294-495 480-667 (694)
459 PRK10790 putative multidrug tr 96.8 0.0052 1.1E-07 67.3 10.1 173 288-494 357-549 (592)
460 PLN03140 ABC transporter G fam 96.8 0.009 1.9E-07 71.4 12.6 38 284-321 177-215 (1470)
461 PRK10789 putative multidrug tr 96.8 0.0059 1.3E-07 66.5 10.4 28 294-321 338-365 (569)
462 cd03284 ABC_MutS1 MutS1 homolo 96.8 0.0043 9.3E-08 58.4 8.1 25 298-322 31-55 (216)
463 PRK11160 cysteine/glutathione 96.8 0.011 2.3E-07 64.5 12.3 174 288-495 356-549 (574)
464 cd03245 ABCC_bacteriocin_expor 96.8 0.0077 1.7E-07 56.9 9.8 33 288-320 20-53 (220)
465 COG4178 ABC-type uncharacteriz 96.8 0.018 3.8E-07 61.4 13.2 139 294-459 416-572 (604)
466 TIGR02203 MsbA_lipidA lipid A 96.8 0.013 2.8E-07 64.0 12.9 167 294-494 355-542 (571)
467 TIGR01526 nadR_NMN_Atrans nico 96.8 0.015 3.2E-07 58.4 12.2 48 412-459 271-318 (325)
468 TIGR00362 DnaA chromosomal rep 96.8 0.0098 2.1E-07 61.9 11.4 38 298-335 137-175 (405)
469 PRK13409 putative ATPase RIL; 96.8 0.0083 1.8E-07 65.3 11.2 26 294-319 96-121 (590)
470 TIGR00957 MRP_assoc_pro multi 96.8 0.0097 2.1E-07 72.0 12.8 168 294-495 1309-1495(1522)
471 TIGR01194 cyc_pep_trnsptr cycl 96.8 0.02 4.4E-07 62.1 14.2 27 294-320 365-391 (555)
472 TIGR02857 CydD thiol reductant 96.8 0.0084 1.8E-07 64.7 11.1 158 288-460 338-516 (529)
473 cd03290 ABCC_SUR1_N The SUR do 96.8 0.027 5.9E-07 53.1 13.4 34 288-321 17-51 (218)
474 PRK04017 hypothetical protein; 96.8 0.0034 7.3E-08 53.1 6.2 71 123-211 22-92 (132)
475 TIGR03796 NHPM_micro_ABC1 NHPM 96.8 0.0064 1.4E-07 68.2 10.4 165 294-494 502-686 (710)
476 TIGR01192 chvA glucan exporter 96.8 0.0084 1.8E-07 65.5 10.9 27 294-320 358-384 (585)
477 PRK10938 putative molybdenum t 96.8 0.016 3.5E-07 61.9 13.0 32 288-319 276-308 (490)
478 PF13207 AAA_17: AAA domain; P 96.8 0.0019 4.1E-08 54.6 4.7 28 299-330 1-28 (121)
479 cd03288 ABCC_SUR2 The SUR doma 96.8 0.012 2.7E-07 57.0 11.0 34 288-321 37-71 (257)
480 COG4148 ModC ABC-type molybdat 96.8 0.0061 1.3E-07 57.9 8.3 44 409-460 145-188 (352)
481 cd01133 F1-ATPase_beta F1 ATP 96.8 0.0037 8E-08 60.3 7.0 66 276-341 48-113 (274)
482 KOG0744 AAA+-type ATPase [Post 96.8 0.0071 1.5E-07 58.5 8.8 124 294-459 174-305 (423)
483 cd01128 rho_factor Transcripti 96.8 0.0058 1.3E-07 58.6 8.3 59 287-345 6-68 (249)
484 TIGR02633 xylG D-xylose ABC tr 96.7 0.011 2.3E-07 63.5 11.3 34 287-320 275-309 (500)
485 TIGR03015 pepcterm_ATPase puta 96.7 0.0047 1E-07 60.3 7.9 58 294-353 39-98 (269)
486 PF02492 cobW: CobW/HypB/UreG, 96.7 0.0066 1.4E-07 55.3 8.3 58 299-359 2-59 (178)
487 PF01695 IstB_IS21: IstB-like 96.7 0.0026 5.6E-08 57.9 5.5 47 294-345 44-90 (178)
488 COG3640 CooC CO dehydrogenase 96.7 0.12 2.7E-06 48.1 16.2 38 300-337 3-40 (255)
489 TIGR01193 bacteriocin_ABC ABC- 96.7 0.011 2.3E-07 66.4 11.5 165 294-494 497-683 (708)
490 PF00270 DEAD: DEAD/DEAH box h 96.7 0.017 3.6E-07 51.8 10.8 142 296-459 13-160 (169)
491 COG4987 CydC ABC-type transpor 96.7 0.034 7.3E-07 57.7 13.7 176 287-496 353-549 (573)
492 cd03275 ABC_SMC1_euk Eukaryoti 96.7 0.0048 1E-07 59.5 7.5 60 410-497 177-236 (247)
493 TIGR02928 orc1/cdc6 family rep 96.7 0.03 6.6E-07 57.3 13.8 53 298-350 41-100 (365)
494 cd03287 ABC_MSH3_euk MutS3 hom 96.7 0.017 3.7E-07 54.4 10.9 35 294-328 28-63 (222)
495 COG4674 Uncharacterized ABC-ty 96.7 0.0035 7.7E-08 56.3 5.7 59 284-343 17-80 (249)
496 PRK00149 dnaA chromosomal repl 96.7 0.012 2.5E-07 62.2 10.8 38 298-335 149-187 (450)
497 KOG0734 AAA+-type ATPase conta 96.7 0.009 1.9E-07 61.5 9.3 38 291-334 332-370 (752)
498 COG4988 CydD ABC-type transpor 96.7 0.026 5.5E-07 59.3 12.9 169 294-497 344-532 (559)
499 KOG0066 eIF2-interacting prote 96.7 0.03 6.4E-07 56.4 12.7 148 281-462 592-763 (807)
500 TIGR01271 CFTR_protein cystic 96.7 0.015 3.4E-07 70.1 13.0 150 294-459 1242-1410(1490)
No 1
>PRK08006 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.8e-46 Score=386.86 Aligned_cols=266 Identities=19% Similarity=0.238 Sum_probs=228.8
Q ss_pred hHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 263 ~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
+++.+++..+...+...|+||||+.||++++ |++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.+++
T Consensus 189 ~~~~i~~~~~~~~~~~~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql 268 (471)
T PRK08006 189 TVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred HHHHHHHHHhcCCCCCCcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 3344444443334567899999999999998 999999999999999999999999999997569999999999999999
Q ss_pred HHHHHHHhhCCCccccccCCCCCCCCHHHHHHHH---HHh-hccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEE
Q 009230 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVI 416 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~---~~l-~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvI 416 (539)
+.|+++..++++..+++.+ .+++++|.++. ..+ ...+++| ++.+..++++|.+.+++++.++ ++++|||
T Consensus 269 ~~Rlla~~~~v~~~~i~~~----~l~~~e~~~~~~a~~~~~~~~~l~I--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvI 342 (471)
T PRK08006 269 MMRMLASLSRVDQTRIRTG----QLDDEDWARISGTMGILLEKRNMYI--DDSSGLTPTEVRSRARRIFREHGGLSLIMI 342 (471)
T ss_pred HHHHHHHhcCCCHHHhhcC----CCCHHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 9999999999999999865 79999987754 344 5567777 3356789999999999988887 6999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 417 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 417 D~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
| |++++.......++.++++++++.||.||+++|||||+++| ||..+++.+++|.++|+++|++|+|.||.|++|+|+
T Consensus 343 D-YLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~R~ 421 (471)
T PRK08006 343 D-YLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRD 421 (471)
T ss_pred c-cHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEecc
Confidence 9 99998754323567778999999999999999999999999 999998889999999999999999999999999998
Q ss_pred CCC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 496 RDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 496 ~~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
+.. +...++..+++|.|||+|++|.+ .+.|+++++||.+.
T Consensus 422 ~~y~~~~~~~g~~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 463 (471)
T PRK08006 422 EVYHENSDLKGIAEIIIGKQRNGPIGTV---RLTFNGQWSRFDNY 463 (471)
T ss_pred cccccccCCCCceEEEEecccCCCCceE---EEEEccCcccccCC
Confidence 642 22234679999999999999875 79999999999875
No 2
>PRK08840 replicative DNA helicase; Provisional
Probab=100.00 E-value=7.8e-46 Score=382.90 Aligned_cols=265 Identities=18% Similarity=0.241 Sum_probs=228.1
Q ss_pred HHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 264 FDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 264 ~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
++.++++.+...+...|+||||+.||.+++ |++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.++++
T Consensus 183 ~~~i~~~~~~~~~~~~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~ 262 (464)
T PRK08840 183 LERIELLYKTPQDGVTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLM 262 (464)
T ss_pred HHHHHHHHhcCCCCCCCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHH
Confidence 444544433223557899999999999997 9999999999999999999999999999876699999999999999999
Q ss_pred HHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHh-hccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEc
Q 009230 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVID 417 (539)
Q Consensus 343 ~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l-~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID 417 (539)
.|+++..++++..+++.+ .+++++|..+ .+++ ...++|| ++.+..++++|.+.+++++.++ ++++||||
T Consensus 263 ~Rlla~~s~v~~~~i~~~----~l~~~e~~~~~~a~~~l~~~~~l~I--~d~~~~ti~~i~~~~r~~~~~~~~~~lvvID 336 (464)
T PRK08840 263 MRMLASLSRVDQTKIRTG----QLDDEDWARISSTMGILMEKKNMYI--DDSSGLTPTEVRSRARRIAREHGGLSMIMVD 336 (464)
T ss_pred HHHHHhhCCCCHHHHhcC----CCCHHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 999999999999998865 7999998775 4556 3456777 3356778999999999998887 49999999
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
|++++...+...++.+++.++++.||.||+++|||||+++| ||..+++.+++|.++||+||++|+|.||+|++|+|++
T Consensus 337 -YLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~ 415 (464)
T PRK08840 337 -YLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDE 415 (464)
T ss_pred -cHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEEeccc
Confidence 99999654323567788999999999999999999999999 9999988899999999999999999999999999986
Q ss_pred CC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 497 DP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 497 ~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
.. +...++.++++|.|||||++|.+ .+.|+++++||.+.
T Consensus 416 ~y~~~~~~~~~~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 456 (464)
T PRK08840 416 VYNPDSPLKGTAEIIIGKQRNGPIGSV---RLTFQGQYSRFDNY 456 (464)
T ss_pred ccCCCcCCCCceEEEEecccCCCCceE---EEEEecCcccccCC
Confidence 42 22334679999999999999875 79999999999875
No 3
>PRK07004 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.3e-45 Score=382.30 Aligned_cols=253 Identities=19% Similarity=0.233 Sum_probs=225.4
Q ss_pred CCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 276 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
+...|+||||+.||++++ +++|+|++|+|+||+|||+|+++++.++|.++|.+|+|||+||+.++++.|+++..++++.
T Consensus 191 ~~~~gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~ 270 (460)
T PRK07004 191 SDVTGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ 270 (460)
T ss_pred CCCCCccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCCH
Confidence 456799999999999998 9999999999999999999999999999876799999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcC-CcEEEEccccccccCCCCCC
Q 009230 355 FEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG-VRGLVIDPYNELDHQRPVSQ 430 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~-~~~vvID~~~~l~~~~~~~~ 430 (539)
.+++.+ .+++++|.++ .+++.+.+++| ++.+..++.+|.+.+++++.+++ +++|||| |++++.......
T Consensus 271 ~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~~~~~i~~~~r~l~~~~~~~~lviID-YLql~~~~~~~~ 343 (460)
T PRK07004 271 HRMRTG----RLTDEDWPKLTHAVQKMSEAQLFI--DETGGLNPMELRSRARRLARQCGKLGLIIID-YLQLMSGSSQGE 343 (460)
T ss_pred HHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhCCCCCEEEEC-hhhhccCCCCCC
Confidence 998865 7999998765 46677777887 34567789999999999988764 8999999 999997543346
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC--CCCCCCcEE
Q 009230 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQ 507 (539)
Q Consensus 431 ~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~--~~~~~~~~~ 507 (539)
++.++++++++.||.||++++||||+++| ||..+++.+++|.++|||+|++|+|.||.|++|+|++.. +...++.++
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~R~~~y~~~~~~~g~~e 423 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTAE 423 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEeccccccCCCcCCCCceE
Confidence 78888999999999999999999999999 999988888999999999999999999999999998742 223346799
Q ss_pred EEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 508 VCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 508 l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
+.|.|||||++|++ ++.|+++++||.+.
T Consensus 424 ~ivaKnR~G~~G~v---~l~f~~~~~~F~~~ 451 (460)
T PRK07004 424 IIIGKQRNGPIGPV---RLTFLGQYTKFDNF 451 (460)
T ss_pred EEEEccCCCCCceE---EEEEecCCCcccCC
Confidence 99999999999975 79999999999875
No 4
>PRK05636 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.4e-45 Score=383.64 Aligned_cols=264 Identities=18% Similarity=0.263 Sum_probs=230.1
Q ss_pred HHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 264 FDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 264 ~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
+++++++.. ..+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.++|.++|.+|+|||+||+.++++
T Consensus 232 ~~~i~~~~~-~~~~~~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~ 310 (505)
T PRK05636 232 MDELEMLSS-QGGIATGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIV 310 (505)
T ss_pred HHHHHHHHh-CCCCCCceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHH
Confidence 344444332 23556899999999999998 9999999999999999999999999999876789999999999999999
Q ss_pred HHHHHHhhCCCccccccCCCCCCCCHHHHHHHH---HHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Q 009230 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPY 419 (539)
Q Consensus 343 ~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~---~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~ 419 (539)
.|+++..+++++.+++.+ .+++++|.++. .++.+.+++| ++....++++|.+.+++++.++++++|||| |
T Consensus 311 ~R~ls~~s~v~~~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~ti~~I~~~~r~~~~~~~~~lvvID-Y 383 (505)
T PRK05636 311 MRLLSAEAEVRLSDMRGG----KMDEDAWEKLVQRLGKIAQAPIFI--DDSANLTMMEIRSKARRLKQKHDLKLIVVD-Y 383 (505)
T ss_pred HHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCEEEEc-c
Confidence 999999999999999865 79999987754 4566677887 346678899999999999999999999999 9
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC
Q 009230 420 NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 498 (539)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~ 498 (539)
++++.......++.+++.++++.||.||++++||||+++| ||..+++.+++|.++||++|++|+|.||.|++|+|++..
T Consensus 384 Lql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~R~~~y 463 (505)
T PRK05636 384 LQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLYRPDSQ 463 (505)
T ss_pred hHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEeccccc
Confidence 9998743334567788999999999999999999999999 999998888999999999999999999999999998743
Q ss_pred --CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 499 --EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 499 --~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
+...++.++|+|.|||||++|++ .+.|+++++||.+.
T Consensus 464 ~~~~~~~g~~elivaK~RnG~~Gtv---~l~f~~~~~rF~~~ 502 (505)
T PRK05636 464 DKDDERAGEADIILAKHRGGPIDTV---QVAHQLHYSRFVDM 502 (505)
T ss_pred CCccCCCCceEEEEecCCCCCCceE---EEEeecCccccccc
Confidence 22335689999999999999986 79999999999875
No 5
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-45 Score=368.79 Aligned_cols=266 Identities=23% Similarity=0.324 Sum_probs=240.2
Q ss_pred cchHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 261 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
.++++++++.+.+. + ..|+||||+.||.+++ |++|+|++++|+||+|||+|++++|.++|...+.+|++||+||+.+
T Consensus 161 ~~~~~~i~~~~~~~-~-~~Gi~tgf~~LD~~t~G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~e 238 (435)
T COG0305 161 KETMDEIEARFENG-G-LIGVPTGFTDLDEITSGFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEE 238 (435)
T ss_pred HHHHHHHHHHhccC-C-CcccccCchhhHHHhcCCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHH
Confidence 34566777776542 3 8999999999999998 9999999999999999999999999999998789999999999999
Q ss_pred HHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Q 009230 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416 (539)
Q Consensus 340 ~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvI 416 (539)
+++.|+++..++++..+++.| .+++++|..+ .+.+++.++|| ++.+..++.+|++.+++++.++++++|||
T Consensus 239 ql~~R~Ls~~s~v~~~kirtg----~l~~~d~~~l~~a~~~l~~~~i~I--dD~~~~si~eir~~aRrlk~~~~l~~i~i 312 (435)
T COG0305 239 QLVMRLLSSESGIESSKLRTG----RLSDDEWERLIKAASELSEAPIFI--DDTPGLTITEIRSKARRLKLKHNLGLIVI 312 (435)
T ss_pred HHHHHhhccccccchhccccc----cccHHHHHHHHHHHHHHhhCCeee--cCCCcCCHHHHHHHHHHHHHhcCccEEEE
Confidence 999999999999999999977 7999998775 56777788887 55788899999999999999999999999
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 417 DPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 417 D~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
| |.+++.+.....++.+.+.++++.||.||++++|||++++| +|..++|.+++|.++|+|+||+|+|.||.|+++||+
T Consensus 313 D-YLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQDAD~VmflyRd 391 (435)
T COG0305 313 D-YLQLMTGGKKSENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQDADIVIFLHRD 391 (435)
T ss_pred E-EEEeecccccchhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhhhCCEEEEEech
Confidence 9 99999877655788899999999999999999999999999 999999999999999999999999999999999998
Q ss_pred CCC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 496 RDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 496 ~~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
+.. +.+..+.++++|.|||||++|++ .+.|++++.+|.+.
T Consensus 392 e~y~~~~~~~g~aeiIi~K~RnGp~GtV---~l~f~~~~~~F~~~ 433 (435)
T COG0305 392 EAYLKDTPDRGEAEVIVAKNRNGPTGTV---KLAFDPQFTKFKNL 433 (435)
T ss_pred hhccCCCCCCceEEEEEEeccCCCCceE---EEEEeccccccccc
Confidence 743 22344789999999999999987 69999999999864
No 6
>PRK08760 replicative DNA helicase; Provisional
Probab=100.00 E-value=2.6e-45 Score=381.23 Aligned_cols=266 Identities=18% Similarity=0.227 Sum_probs=230.4
Q ss_pred chHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Q 009230 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340 (539)
Q Consensus 262 ~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~ 340 (539)
++++.+++.+.. .+...|+||||+.||++++ |++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.++
T Consensus 194 ~~~~~~~~~~~~-~~~~~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~q 272 (476)
T PRK08760 194 DAFEELRNRFEN-GGNITGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQ 272 (476)
T ss_pred HHHHHHHHHHhC-CCCCCcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHH
Confidence 344455554433 4557899999999999998 99999999999999999999999999999766999999999999999
Q ss_pred HHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Q 009230 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417 (539)
Q Consensus 341 ~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID 417 (539)
++.|+++..++++...++.+ .+++++|.++ .+++.+.+++| ++....++++|...+++++.++++++||||
T Consensus 273 l~~Rl~a~~s~i~~~~i~~g----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~t~~~I~~~~r~l~~~~~~~lVvID 346 (476)
T PRK08760 273 LAMRLISSNGRINAQRLRTG----ALEDEDWARVTGAIKMLKETKIFI--DDTPGVSPEVLRSKCRRLKREHDLGLIVID 346 (476)
T ss_pred HHHHHHHhhCCCcHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--eCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999988865 7888887654 56677777777 335667899999999999999999999999
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
|++++.......++.+++.++++.||.||++++||||+++| ||..+++.+++|.++||++|++|+|.||.|++|||++
T Consensus 347 -yLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~ 425 (476)
T PRK08760 347 -YLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFIYRDD 425 (476)
T ss_pred -cHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEEechh
Confidence 88888654334567778999999999999999999999999 9999888889999999999999999999999999986
Q ss_pred CC--C-CCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 497 DP--E-AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 497 ~~--~-~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
.. + .+.++.++|+|.|||||++|.+ .+.|+++++||.+.
T Consensus 426 ~y~~~~~~~~~~~eliiaKnR~G~~g~~---~l~f~~~~~~f~~~ 467 (476)
T PRK08760 426 YYNKENSPDKGLAEIIIGKHRGGPTGSC---KLKFFGEYTRFDNL 467 (476)
T ss_pred hcccccccCCCceEEEEEccCCCCCceE---EEEEecCCCceecc
Confidence 32 2 2235679999999999999875 79999999999885
No 7
>PRK06321 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.7e-45 Score=375.01 Aligned_cols=253 Identities=17% Similarity=0.209 Sum_probs=223.1
Q ss_pred CCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 276 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.++|..+|.+|+|||+||+.++++.|+++..++++.
T Consensus 204 ~~~~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~~ 283 (472)
T PRK06321 204 PMISGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVES 283 (472)
T ss_pred CCCCccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCCH
Confidence 456799999999999998 9999999999999999999999999999976699999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC---C
Q 009230 355 FEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP---V 428 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~---~ 428 (539)
.+++.+ .++.++|.++ ...+.+.+++| ++.+..++++|.+.+++++.++++++|||| |++++.... .
T Consensus 284 ~~i~~~----~l~~~e~~~~~~a~~~l~~~~~~i--dd~~~~ti~~i~~~~r~~~~~~~~~lvvID-yLql~~~~~~~~~ 356 (472)
T PRK06321 284 KKISVG----DLSGRDFQRIVSVVNEMQEHTLLI--DDQPGLKITDLRARARRMKESYDIQFLIID-YLQLLSGSGNLRN 356 (472)
T ss_pred HHhhcC----CCCHHHHHHHHHHHHHHHcCCEEE--eCCCCCCHHHHHHHHHHHHHhcCCCEEEEc-chHHcCCCCccCC
Confidence 998865 7888888765 45566677877 335677899999999999999999999999 889886432 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCC-CCCCCcE
Q 009230 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE-AGPIDRV 506 (539)
Q Consensus 429 ~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~-~~~~~~~ 506 (539)
..++..++.++++.||.||++++||||+++| ||+.+++.+++|.++|||+|++|+|.||.|++|+|++..+ ...++.+
T Consensus 357 ~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~R~~~y~~~~~~~~~ 436 (472)
T PRK06321 357 SESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLLRREYYDPNDKPGTA 436 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEechhhcCCcCCCCce
Confidence 3456678999999999999999999999999 9999988889999999999999999999999999976422 1234679
Q ss_pred EEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 507 QVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 507 ~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
++.|.|||+|++|.+ .+.|++++.||.+.
T Consensus 437 elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 465 (472)
T PRK06321 437 ELIVAKNRHGSIGSV---PLVFEKEFARFRNY 465 (472)
T ss_pred EEEEEecCCCCCceE---EEEEecCCCcccCc
Confidence 999999999999875 79999999999875
No 8
>PRK06749 replicative DNA helicase; Provisional
Probab=100.00 E-value=9.9e-45 Score=372.02 Aligned_cols=270 Identities=17% Similarity=0.217 Sum_probs=227.6
Q ss_pred cccchHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 259 NFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 259 ~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
++.+.++++.+......+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.++|.+ |.+|+|||+||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs 225 (428)
T PRK06749 147 DLKDALVDLYEELHQDAKEITGIETGYTSLNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMS 225 (428)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCccCCcHHHHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCC
Confidence 44454444322222234567899999999999998 9999999999999999999999999999975 999999999999
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcC--Cc
Q 009230 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VR 412 (539)
Q Consensus 338 ~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~--~~ 412 (539)
.++++.|+++..++++..+++.+ ...+++++|.++ ...+.+.+++| ++.+..++++|.+.+++++.+++ +.
T Consensus 226 ~~ql~~R~ls~~~~i~~~~l~~~--~~~l~~~e~~~~~~a~~~l~~~~i~i--~d~~~~t~~~I~~~~r~~~~~~~~~~~ 301 (428)
T PRK06749 226 SKQLLKRMASCVGEVSGGRLKNP--KHRFAMEDWEKVSKAFAEIGELPLEI--YDNAGVTVQDIWMQTRKLKRKHGDKKI 301 (428)
T ss_pred HHHHHHHHHHhccCCCHHHHhcC--cccCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999888753 125788887654 45666777877 34677889999999999998887 45
Q ss_pred EEEEccccccccCC-CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEE
Q 009230 413 GLVIDPYNELDHQR-PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490 (539)
Q Consensus 413 ~vvID~~~~l~~~~-~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl 490 (539)
+|||| |++++... ....++.++++.+++.||.||++++||||+++| ||..+++.+++|.++|||+|++|+|.||.|+
T Consensus 302 lvvID-yLqli~~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl 380 (428)
T PRK06749 302 LIIVD-YLQLITGDPKHKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIM 380 (428)
T ss_pred EEEEe-ChhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEE
Confidence 99999 99988643 223567788999999999999999999999999 9999888889999999999999999999999
Q ss_pred EEEeCCCC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceecc
Q 009230 491 VIHRNRDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537 (539)
Q Consensus 491 ~l~r~~~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~ 537 (539)
+|+|++.. +...++.++++|.|||||++|.+ .+.|+++++||.+
T Consensus 381 ~l~R~~~y~~~~~~~~~~eliiaKnR~G~~G~v---~~~f~~~~~~f~~ 426 (428)
T PRK06749 381 LMYREDYYDKETMQKEMTEIHVAKHRNGPVGSF---KLRFLKEFGRFVE 426 (428)
T ss_pred EEeecccccccccCCCceEEEEecCCCCCCceE---EEEEecCcccccC
Confidence 99998742 22234679999999999999875 7999999999986
No 9
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=100.00 E-value=2.7e-45 Score=356.65 Aligned_cols=249 Identities=24% Similarity=0.341 Sum_probs=211.4
Q ss_pred ccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccc
Q 009230 280 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 280 gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~ 358 (539)
|+||||+.||++++ +++|+|++|+|+||+|||+|++|++.+++.++|.+|+|||+||+.+++..|+++..++++..+++
T Consensus 1 Gi~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~ 80 (259)
T PF03796_consen 1 GIPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIR 80 (259)
T ss_dssp SB-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHH
T ss_pred CCCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhh
Confidence 79999999999998 99999999999999999999999999999975799999999999999999999999999999998
Q ss_pred cCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEccccccccCCCCCCCHHH
Q 009230 359 YGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
.+ .++++++.++ .+++.+..+++. +.+..++++|.+.++.+..+ .++++|||| |++++.......++++
T Consensus 81 ~g----~l~~~e~~~~~~~~~~l~~~~l~i~--~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID-yl~ll~~~~~~~~~~~ 153 (259)
T PF03796_consen 81 SG----DLSDEEFERLQAAAEKLSDLPLYIE--DTPSLTIDDIESKIRRLKREGKKVDVVFID-YLQLLKSEDSSDNRRQ 153 (259)
T ss_dssp CC----GCHHHHHHHHHHHHHHHHTSEEEEE--ESSS-BHHHHHHHHHHHHHHSTTEEEEEEE-EGGGSBTSCSSSCCHH
T ss_pred cc----ccCHHHHHHHHHHHHHHhhCcEEEE--CCCCCCHHHHHHHHHHHHhhccCCCEEEec-hHHHhcCCCCCCCHHH
Confidence 65 6888877654 566777777763 25677999999999999988 889999999 8888877545667788
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCC--CCCCCcEEEEEE
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE--AGPIDRVQVCVR 511 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~--~~~~~~~~l~i~ 511 (539)
.+..+++.||.+|+++|||||+++| ||..+++.+++|+++|++||+.|+|.||+||+|+|++..+ ....+..+|+|.
T Consensus 154 ~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r~~~~~~~~~~~~~~~l~v~ 233 (259)
T PF03796_consen 154 EIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHRDEKYDEDRDDKGEAELIVA 233 (259)
T ss_dssp HHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEEHCHCHCCSSCTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhccchhhccccCCCCeEEEEEE
Confidence 9999999999999999999999999 9988877788999999999999999999999999987432 223458999999
Q ss_pred EeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 512 KVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 512 K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|||+|++|.+ .+.|+++++||.|.
T Consensus 234 KnR~G~~g~v---~~~f~~~~~~f~~~ 257 (259)
T PF03796_consen 234 KNRNGPTGTV---PLRFNPETSRFTDL 257 (259)
T ss_dssp EESSS--EEE---EEEEETTTTEEEE-
T ss_pred ecCCCCCceE---EEEEECCCCeEeec
Confidence 9999988865 79999999999985
No 10
>PRK06904 replicative DNA helicase; Validated
Probab=100.00 E-value=2.3e-44 Score=373.24 Aligned_cols=255 Identities=16% Similarity=0.217 Sum_probs=221.5
Q ss_pred CCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 275 SGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 275 ~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
.+...|+||||+.||++++ |++|+|++|+|+||+|||+|++++|.++|...|.+|+|||+||+.++++.|+++..++++
T Consensus 198 ~~~~~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 198 NNGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVD 277 (472)
T ss_pred CCCCCCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 3567899999999999998 999999999999999999999999999997669999999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHH---HHhhc-cceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEccccccccCCCC
Q 009230 354 FFEANYGGSAERMTVEEFEQGK---AWLSN-TFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPV 428 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~---~~l~~-~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~~~~l~~~~~~ 428 (539)
..+++.+ ..++.++|.++. ..+.. .+++| ++.+..++++|.+.++++..++ ++++|||| |++|+.....
T Consensus 278 ~~~i~~g---~~l~~~e~~~~~~a~~~l~~~~~l~I--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID-YLqli~~~~~ 351 (472)
T PRK06904 278 QTKIRTG---QNLDQQDWAKISSTVGMFKQKPNLYI--DDSSGLTPTELRSRARRVYRENGGLSLIMVD-YLQLMRAPGF 351 (472)
T ss_pred HHHhccC---CCCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHHHHHHHHHHHHhCCCCCEEEEe-cHHhcCCCCC
Confidence 9988754 158889887754 45543 34776 3356778999999999888776 69999999 9999975433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCC--C-CCC
Q 009230 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA--G-PID 504 (539)
Q Consensus 429 ~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~--~-~~~ 504 (539)
..++..+++++++.||.||+++|||||+++| ||..+++.+++|.++|||||++|+|.||.|++|+|++..+. . .++
T Consensus 352 ~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l~R~~~y~~~~~~~~~ 431 (472)
T PRK06904 352 EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFIYRDEVYNETTEDNKG 431 (472)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEEeccccccCccccCCC
Confidence 3567778999999999999999999999999 99998888999999999999999999999999999864221 1 246
Q ss_pred cEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 505 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 505 ~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
.+++.|.|||+|++|.+ .+.|+++++||.+.
T Consensus 432 ~~elivaKnR~G~~G~v---~l~f~~~~~~f~~~ 462 (472)
T PRK06904 432 VAEIIIGKQRNGPIGRV---RLAFQGQYSRFDNL 462 (472)
T ss_pred ceEEEEeccCCCCCceE---EEEEccCCCCcccc
Confidence 79999999999999875 79999999999875
No 11
>PRK05595 replicative DNA helicase; Provisional
Probab=100.00 E-value=1.3e-44 Score=376.48 Aligned_cols=265 Identities=19% Similarity=0.294 Sum_probs=229.3
Q ss_pred hHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 263 ~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
+++++++.+.+ .+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.++|.++|.+|+|||+||+.+++
T Consensus 167 ~~~~~~~~~~~-~~~~~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 167 GFEQIENLFNN-KGETTGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred HHHHHHHHHhC-CCCCCcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 34445554443 4556799999999999998 999999999999999999999999999886569999999999999999
Q ss_pred HHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Q 009230 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~ 418 (539)
+.|+++..++++...++.+ .++.++|.++ .+.+.+.+++| ++....++++|.+.+++++.++|+++||||
T Consensus 246 ~~R~~a~~~~v~~~~~~~~----~l~~~e~~~~~~~~~~l~~~~l~i--~d~~~~t~~~i~~~~r~~~~~~~~~~vvID- 318 (444)
T PRK05595 246 AYKLLCSEANVDMLRLRTG----NLEDKDWENIARASGPLAAAKIFI--DDTAGVSVMEMRSKCRRLKIEHGIDMILID- 318 (444)
T ss_pred HHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 9999999999999988765 7888887665 45566677777 335678899999999999988999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
|++++.......++.+++.++++.||.||+++|||||+++| ||..+++.+++|.++||++|++|+|.||.||+|+|++.
T Consensus 319 ylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~r~~~ 398 (444)
T PRK05595 319 YLQLMSGGKGSESRQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLYRDEY 398 (444)
T ss_pred HHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEecccc
Confidence 88998754334567788999999999999999999999999 99998888899999999999999999999999999874
Q ss_pred C--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 498 P--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 498 ~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
. +...++..++.|.|||+|++|.+ .+.|+++++||.+.
T Consensus 399 ~~~~~~~~~~~e~iv~K~R~G~~g~~---~~~~~~~~~~f~~~ 438 (444)
T PRK05595 399 YNKETEDKNVAECIIAKQRNGPTGTV---KLAWLGQYSKFGNL 438 (444)
T ss_pred cccccCCCCceEEEEEccCCCCCceE---EEEEecCCCccccc
Confidence 2 22345789999999999999875 79999999999874
No 12
>PRK08506 replicative DNA helicase; Provisional
Probab=100.00 E-value=3.4e-44 Score=373.48 Aligned_cols=252 Identities=19% Similarity=0.251 Sum_probs=219.7
Q ss_pred CCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 276 GDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.+++.+ |.+|+|||+||++++++.|+++..+++++
T Consensus 170 ~~~~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 170 KDIIGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCCcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 456799999999999998 9999999999999999999999999999875 99999999999999999999999999999
Q ss_pred cccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEccccccccCCCCCC
Q 009230 355 FEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQ 430 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~~~~l~~~~~~~~ 430 (539)
.+++.+ .+++++|.++ .+.+.+.+++| ++.+..++++|.+.+++++.++ ++++|||| |++++.......
T Consensus 249 ~~i~~~----~l~~~e~~~~~~a~~~l~~~~l~I--~d~~~~ti~~I~~~~r~l~~~~~~~~lvvID-yLql~~~~~~~~ 321 (472)
T PRK08506 249 QNLRTG----DLDDDEWERLSDACDELSKKKLFV--YDSGYVNIHQVRAQLRKLKSQHPEIGLAVID-YLQLMSGSGNFK 321 (472)
T ss_pred HHHhcC----CCCHHHHHHHHHHHHHHHcCCeEE--ECCCCCCHHHHHHHHHHHHHhCCCCCEEEEc-ChhhccCCCCCC
Confidence 998865 7898888654 46677777887 3356778999999999988775 59999999 888987543335
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCC----------
Q 009230 431 TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE---------- 499 (539)
Q Consensus 431 ~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~---------- 499 (539)
++..++..+++.||.||+++|||||+++| ||..+++.+++|.++|||||++|+|.||+|++|||++..+
T Consensus 322 ~r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~R~~~y~~~~~~~~~~~ 401 (472)
T PRK08506 322 DRHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVYRDDVYKEREEKEKEKK 401 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEecccccccccccccccc
Confidence 67788999999999999999999999999 9999888889999999999999999999999999985211
Q ss_pred ---CC-----------CCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 500 ---AG-----------PIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 500 ---~~-----------~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
.+ ..+.++++|.|||||++|++ .+.|++++.||.+.
T Consensus 402 ~~~~g~~~~~~~~~~~~~~~~eliiaKnR~G~~G~v---~l~f~~~~~~f~~~ 451 (472)
T PRK08506 402 AKKEGKEERRIHFQNKSIEEAEIIIGKNRNGPTGTV---KLRFQKEFTRFVDK 451 (472)
T ss_pred cccccccccccccccccccceEEEEecCCCCCCceE---EEEEecCCccccCC
Confidence 00 01248999999999998875 79999999999885
No 13
>PRK09165 replicative DNA helicase; Provisional
Probab=100.00 E-value=3.4e-44 Score=375.37 Aligned_cols=254 Identities=22% Similarity=0.289 Sum_probs=222.4
Q ss_pred CCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh--------------cCCeEEEEeCCCCHH
Q 009230 275 SGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH--------------AGWKFVLCSMENKVR 339 (539)
Q Consensus 275 ~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~--------------~g~~vl~~s~E~~~~ 339 (539)
.+...|+||||+.||++++ |.+|+|++|+|+||+|||+|+++++.++|.+ +|.+|+|||+||+++
T Consensus 194 ~~~~~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 194 DGHLSGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCCCcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 4567899999999999998 9999999999999999999999999999875 268999999999999
Q ss_pred HHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHH---HHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEE
Q 009230 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVI 416 (539)
Q Consensus 340 ~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~---~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvI 416 (539)
+++.|+++..++++...++.+ .++.+++.++. ..+...+++|. +.+..++++|.+.+++++.++++++|||
T Consensus 274 ql~~R~la~~s~v~~~~i~~~----~l~~~e~~~l~~a~~~l~~~~l~I~--d~~~~ti~~i~~~ir~l~~~~~~~lvvI 347 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRG----KISEEDFEKLVDASQELQKLPLYID--DTPALSISQLRARARRLKRQHGLDLLVV 347 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCeEEe--CCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999988765 79999887654 45666778873 3567789999999999999999999999
Q ss_pred ccccccccCCC--CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEE
Q 009230 417 DPYNELDHQRP--VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493 (539)
Q Consensus 417 D~~~~l~~~~~--~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~ 493 (539)
| |++++.... ...++.+++..+++.||.||+++|||||+++| ||..+++.+++|.++|||||++|+|.||.|++|+
T Consensus 348 D-yLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l~ 426 (497)
T PRK09165 348 D-YLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFVY 426 (497)
T ss_pred c-chHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEEe
Confidence 9 888886442 23566678999999999999999999999999 9999888889999999999999999999999999
Q ss_pred eCCCCCC-------------------CCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 494 RNRDPEA-------------------GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 494 r~~~~~~-------------------~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|++..+. ...+.+++.|.|||+|++|++ .+.|+++++||.+.
T Consensus 427 R~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ivaKnR~G~~g~~---~~~f~~~~~~f~~~ 487 (497)
T PRK09165 427 REEYYLKRKEPREGTPKHEEWQEKMEKVHNKAEVIIAKQRHGPTGTV---KLAFESEFTRFGDL 487 (497)
T ss_pred ehhhhccccccccccchhhhhhhhhcccCCceEEEEeccCCCCCeeE---EEEEecCCCcccCc
Confidence 9753110 013679999999999999875 79999999999885
No 14
>PHA02542 41 41 helicase; Provisional
Probab=100.00 E-value=1.1e-43 Score=366.82 Aligned_cols=267 Identities=16% Similarity=0.195 Sum_probs=227.0
Q ss_pred ccchHHHHHHHhhccCCCccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 260 FRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 260 ~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.++++.++++.....+...|+||||+.||.++ | +.+|+|++|+|+||+|||+|++++|.+++.+ |.+|+|||+||+
T Consensus 151 ~~~~~~~ie~~~~~~~~~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~ 229 (473)
T PHA02542 151 GHDYFEDYEERYDSYQSKANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMA 229 (473)
T ss_pred HHHHHHHHHHHHhhccCCCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCC
Confidence 356677777754322344789999999999999 6 9999999999999999999999999999964 999999999999
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHh---hccceeEeecCCCCCCHHHHHHHHHHHHHHcC--Cc
Q 009230 338 VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL---SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VR 412 (539)
Q Consensus 338 ~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l---~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~--~~ 412 (539)
.++++.|+++..+++++.+++ .+++++|.+..+.+ ...+++|..++.+..++.+|...++++..+++ ++
T Consensus 230 ~~ql~~Rl~a~~~~i~~~~l~------~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~d 303 (473)
T PHA02542 230 EEVIAKRIDANLLDVSLDDID------DLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPD 303 (473)
T ss_pred HHHHHHHHHHHHcCCCHHHHh------hcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999998875 37888887655443 33456554344677789999999999987776 89
Q ss_pred EEEEccccccccCC---CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccce
Q 009230 413 GLVIDPYNELDHQR---PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 413 ~vvID~~~~l~~~~---~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
+|||| |++|+... ....++.++++++++.||.||+++|||||+++| ||+.+++.+ |.++|+|||++|+|.||.
T Consensus 304 lVvID-YLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~d--P~lsDLreSG~IEqdAD~ 380 (473)
T PHA02542 304 VIIVD-YLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSD--VDMSDTAESAGLPATADF 380 (473)
T ss_pred EEEEe-chhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCC--CcchhcccccchHhhcCE
Confidence 99999 99998632 123577888999999999999999999999999 999887654 999999999999999999
Q ss_pred EEEEEeCCCCCCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 489 GIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 489 vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|++|+|++..+ ..+.++++|.|||+|++|++|.+.+.|+++++||.++
T Consensus 381 vl~l~r~~~~~--~~~~~eliv~KnR~G~~g~~g~v~l~f~~~~~~F~~~ 428 (473)
T PHA02542 381 MLAVIETEELA--QMGQQLVKQLKSRYGDKNKFNKFLMGVDKGNQRWYDV 428 (473)
T ss_pred EEEEecCcccc--cCCeEEEEEecCCCCCCCCceEEEEEEECCcCccccc
Confidence 99999987542 2367999999999999998888999999999999885
No 15
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=100.00 E-value=2.2e-43 Score=368.35 Aligned_cols=266 Identities=21% Similarity=0.308 Sum_probs=226.7
Q ss_pred hHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 263 ~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
+++++++.... .+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.+++..+|.+|+|||+||+++++
T Consensus 161 ~~~~~~~~~~~-~~~~~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 161 TVEEIEELYER-GGGITGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred HHHHHHHHHhC-CCCCCcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 34445444332 3457899999999999998 999999999999999999999999999997669999999999999999
Q ss_pred HHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Q 009230 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~ 418 (539)
+.|+++..++++...++.+ .++.+++.++ .+.+.+.++++. +.+..++++|.+.+++++.++|+++||||
T Consensus 240 ~~R~~~~~~~v~~~~~~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~~~~~i~~~i~~~~~~~~~~~vvID- 312 (434)
T TIGR00665 240 AMRMLSSESRVDSQKLRTG----KLSDEDWEKLTSAAGKLSEAPLYID--DTPGLTITELRAKARRLKREHGLGLIVID- 312 (434)
T ss_pred HHHHHHHhcCCCHHHhccC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 9999999999999888765 6888877554 456766777773 34567899999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
|++++.......++..++..+++.||.||+++|||||+++| ||..+++.+++|.++|++||+.|+|.||.||+|+|++.
T Consensus 313 ~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~r~~~ 392 (434)
T TIGR00665 313 YLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLYRDEY 392 (434)
T ss_pred chHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEeccccc
Confidence 77777543323466678899999999999999999999999 99988777899999999999999999999999999873
Q ss_pred --CCCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccCC
Q 009230 498 --PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 539 (539)
Q Consensus 498 --~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~~ 539 (539)
++...++.+++.|.|||+|++|.+ .+.|+++++||.|.+
T Consensus 393 ~~~~~~~~~~~~l~v~KnR~G~~g~~---~l~~~~~~~~f~~~~ 433 (434)
T TIGR00665 393 YNPDSEDKGIAEIIIAKQRNGPTGTV---KLAFQGEYTRFENLA 433 (434)
T ss_pred cCCCcCCCCceEEEEecCCCCCCCeE---EEEEecCCCcccCCC
Confidence 222335679999999999988865 899999999999863
No 16
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-44 Score=334.47 Aligned_cols=436 Identities=19% Similarity=0.236 Sum_probs=341.6
Q ss_pred hcCCCHHHHHHcCcccccC-CceeEEEEeEe----eCCE-EEEEE------eecCCCcccc-----cCCCCCcccccccc
Q 009230 58 ERLISAETLRRNRVMQKRH-GHEVVIAFPYW----RNGK-LVNCK------YRDFNKKFWQ-----EKDTEKVFYGLDDI 120 (539)
Q Consensus 58 ~Rgi~~~~~~~~~~~~~~~-~~~~~i~fP~~----~~G~-~~~~~------~R~~~~~~~~-----~~~~~~~l~g~~~~ 120 (539)
--.|+.+++.+|.+++... ...+++.||.+ .++. +.+.| .|....+|-- ......++||++.+
T Consensus 39 lt~i~~~tl~rf~Vry~~p~~~qp~~~FP~~~~~tp~~~~~~GlK~l~e~~~~~~g~~ye~~~~~~~r~a~~~~fGL~l~ 118 (514)
T KOG2373|consen 39 LTNISFETLARFNVRYQTPTYGQPAILFPRYRGMTPRLRIPMGLKLLREVGDRMEGENYELPDETSVRQAFNGVFGLHLA 118 (514)
T ss_pred cchhhhhhhccccccccCcccCCCccccccccccCccchhhhhhHHHHHhhhccccccCCCCcccchhhhhcceeceeec
Confidence 3677899999999876432 24569999933 2221 12333 2222223321 12567889999988
Q ss_pred CC-CCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchH
Q 009230 121 EG-ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQA 199 (539)
Q Consensus 121 ~~-~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~ 199 (539)
.. ...|+||-.|.|++++.++....++++|-|... +|.. .+++|++|++||+|+--|...++
T Consensus 119 ~rrd~~vVltsne~D~lal~~~t~~~t~~LP~g~~~------lP~~-----------~LPyLE~F~~i~fWl~~d~~sw~ 181 (514)
T KOG2373|consen 119 TRRDRSVVLTSNERDALALYEATKALTFALPHGEIL------LPQL-----------VLPYLEEFDKIYFWLPVDHVSWS 181 (514)
T ss_pred ccccceEEEeecchhHHHHhhhcCceEEEccccccc------CcHH-----------HHHHHHhhheEEEEecccccchH
Confidence 65 568999999999999999986668999988865 5532 36899999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHHhccccCccccccccchHHHHHHHhhccCCCcc
Q 009230 200 LAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEF 279 (539)
Q Consensus 200 ~~~~~~~~l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 279 (539)
||+.++..|...+|..++ |....+ .-.....+.-.+..++..|.+..++++.++.++.++|..-+.+ -+.+.
T Consensus 182 aAk~fa~kLn~~rClLvr-p~e~~p------~p~~al~~rlnl~~il~~a~p~~hk~i~sf~~mRe~ilseL~N-~e~v~ 253 (514)
T KOG2373|consen 182 AAKDFASKLNTLRCLLVR-PEERPP------EPVRALDHRLNLNSILNSAVPMRHKGIRSFTDMREGILSELLN-TERVV 253 (514)
T ss_pred HHHHHHhhcCcceEEEEC-CCCCCc------chhhhhcccccHHHHHhhhchhhhhhhhhHHHHHHHHHHHHhh-hhhhh
Confidence 999999999999999998 543222 2222223455677888999999999999999999988777665 56778
Q ss_pred cccc-Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GIST-GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~t-g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
|+.| .||.|+++++ .++|||++++|++|+|||||+...++.++.+ |.+++|.|+|++..+++..|+.+.+|.++.+-
T Consensus 254 G~~WkRFpvLNk~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~Q-GVnTLwgSFEi~n~rla~~mL~Qyagyrl~dr 332 (514)
T KOG2373|consen 254 GFQWKRFPVLNKYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQ-GVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDR 332 (514)
T ss_pred ceeehhhhHHHHHhccCCCCceEEEecCCCCCceeEehHhhHHHHhh-hhhheeeeeecchHHHHHHHHHHHccCchHhh
Confidence 8887 6999999998 9999999999999999999999999999997 99999999999999999999999988755321
Q ss_pred ccCCCCCCCCH-HHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHH
Q 009230 358 NYGGSAERMTV-EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436 (539)
Q Consensus 358 ~~~~~~~~l~~-~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~ 436 (539)
+.. .-|.. .+...++|++.. .+...++.+++.|...+.-+++..|||||+..+|....-..++...+
T Consensus 333 --------l~~y~HWad---rFErlplyfmtf-hgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Drf~~Q 400 (514)
T KOG2373|consen 333 --------LNSYKHWAD---RFERLPLYFMTF-HGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDRFHLQ 400 (514)
T ss_pred --------hhhhhHHHH---HHhccchHhhhh-cccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccchhhhH
Confidence 110 11222 222334444321 46777889999999888889999999999998887654345677788
Q ss_pred HHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCC
Q 009230 437 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNK 516 (539)
Q Consensus 437 ~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g 516 (539)
+.++..+++||.++||||.+|.|+||.++ ++....+++-||....|.||+||++.+.+... .++...+.|.|||.
T Consensus 401 D~iig~fR~fAT~nn~HvTlVvHPRKed~--d~El~t~s~fGsAkatQEADNVliiQdkrl~~--~rgkkyLqi~KNRy- 475 (514)
T KOG2373|consen 401 DRIIGYFRQFATQNNIHVTLVVHPRKEDG--DTELDTQSFFGSAKATQEADNVLIIQDKRLDR--DRGKKYLQILKNRY- 475 (514)
T ss_pred HHHHHHHHHHhhccceeEEEEecccccCC--CceeeehhhccccccccccccEEEEeeccccc--ccchhhhhhhhhcc-
Confidence 89999999999999999999999999875 67788899999999999999999998766532 24567899999887
Q ss_pred CcceeeeEEEEEeCCCceecc
Q 009230 517 VVGTIGEAFLSYNRVTGEYMD 537 (539)
Q Consensus 517 ~~G~~~~~~l~fd~~~~rf~~ 537 (539)
.|.+|..+|+|+.....|.-
T Consensus 476 -~Gdvg~~pLEf~kn~ltyS~ 495 (514)
T KOG2373|consen 476 -YGDVGSDPLEFVKNPLTYSH 495 (514)
T ss_pred -cCcccccceeeccCCccccc
Confidence 57888889999988877753
No 17
>PRK05748 replicative DNA helicase; Provisional
Probab=100.00 E-value=3e-43 Score=367.23 Aligned_cols=265 Identities=19% Similarity=0.289 Sum_probs=226.8
Q ss_pred HHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 264 FDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 264 ~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
++.++..... .+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.++|.++|.+|+|||+||++++++
T Consensus 170 ~~~l~~~~~~-~~~~~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~ 248 (448)
T PRK05748 170 YDRIEMLHNQ-TGDITGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLV 248 (448)
T ss_pred HHHHHHHHhc-CCCCCCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 3444443332 3566899999999999998 9999999999999999999999999999876699999999999999999
Q ss_pred HHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEcc
Q 009230 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDP 418 (539)
Q Consensus 343 ~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~ 418 (539)
.|+++..++++...++.+ .++.++|..+ ...+.+.+++|. +.+..++++|.+.+++++.++ ++++||||
T Consensus 249 ~R~l~~~~~v~~~~i~~~----~l~~~e~~~~~~a~~~l~~~~~~i~--d~~~~ti~~i~~~~r~~~~~~~~~~~vvID- 321 (448)
T PRK05748 249 MRMLCAEGNIDAQRLRTG----QLTDDDWPKLTIAMGSLSDAPIYID--DTPGIKVTEIRARCRRLAQEHGGLGLILID- 321 (448)
T ss_pred HHHHHHhcCCCHHHhhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHhcCCCCEEEEc-
Confidence 999999999998888765 7888887654 566777778873 355678999999999999888 79999999
Q ss_pred ccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 419 YNELDHQRP-VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 419 ~~~l~~~~~-~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
|++++.... ...++.+.+..+++.||.||++++||||+++| ||..+++.+++|.++||+||++|+|.||.|++|+|++
T Consensus 322 yL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~r~~ 401 (448)
T PRK05748 322 YLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLYRDD 401 (448)
T ss_pred cchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEeccc
Confidence 888886432 23567778999999999999999999999999 9988878889999999999999999999999999987
Q ss_pred CC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccCC
Q 009230 497 DP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDIV 539 (539)
Q Consensus 497 ~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~~ 539 (539)
.. +...++.++++|.|||+|++|.+ .+.|++++.||.+.+
T Consensus 402 ~~~~~~~~~~~~e~~v~K~R~G~~g~~---~~~~~~~~~~f~~~~ 443 (448)
T PRK05748 402 YYDEETENKNTIEIIIAKQRNGPVGTV---ELAFQKEYNKFVNLA 443 (448)
T ss_pred ccCccccCCCceEEEEeccCCCCCceE---EEEEeCCCCcccccc
Confidence 42 22335689999999999999875 799999999998853
No 18
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=100.00 E-value=2.8e-42 Score=358.03 Aligned_cols=284 Identities=20% Similarity=0.259 Sum_probs=227.7
Q ss_pred CCChHHHHHhcCcchHHHHHHhccccCccccccccchHHH----HHHHhhccCCCccccccCchhhhhhhc-cCCCcEEE
Q 009230 227 FKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDE----IDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTI 301 (539)
Q Consensus 227 ~kD~nd~l~~~g~~~~~~~~~~A~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~ 301 (539)
.+++.+.+..- ...+.++- ++......+..++.++.++ +++.... .+...|+||||+.||++++ |++|+|++
T Consensus 122 ~~~~~~~l~~~-~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~gi~tG~~~LD~~~~G~~~g~liv 198 (421)
T TIGR03600 122 GQTAEQKVEEA-QAALLALT-GMSDGQERGFVTFGEVLEDVVRDLDKRFNP-KGELTGLSTGLPKLDRLTNGLVKGDLIV 198 (421)
T ss_pred CCCHHHHHHHH-HHHHHHhh-hhhccCcCCchhHHHHHHHHHHHHHHHhcC-CCCCcceeCCChhHHHHhcCCCCCceEE
Confidence 34777876542 11222222 1122233345555554443 4443322 3456899999999999997 99999999
Q ss_pred EEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHh
Q 009230 302 VTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWL 378 (539)
Q Consensus 302 i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l 378 (539)
|+|+||+|||+|+++++.++|.++|.+|+|||+||++++++.|+++..++++...++.+ .++.+++.++ .+.+
T Consensus 199 iag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~~~~~~~~----~l~~~~~~~~~~~~~~l 274 (421)
T TIGR03600 199 IGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNIRTG----RFNDSDFNRLLNAVDRL 274 (421)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcC----CCCHHHHHHHHHHHHHH
Confidence 99999999999999999999965699999999999999999999999999999988765 7888887654 4566
Q ss_pred hccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 009230 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFV 457 (539)
Q Consensus 379 ~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~ 457 (539)
.+.+++| ++.+..++++|.+.+++++.++ ++++|||| |++++... ...++.+.+..+++.||.||++++||||++
T Consensus 275 ~~~~l~i--~d~~~~t~~~i~~~~r~~~~~~~~~~lvvID-yLql~~~~-~~~~~~~~~~~i~~~Lk~lAke~~i~Vi~l 350 (421)
T TIGR03600 275 SEKDLYI--DDTGGLTVAQIRSIARRIKRKKGGLDLIVVD-YIQLMAPT-RGRDRNEELGGISRGLKALAKELDVPVVLL 350 (421)
T ss_pred hcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEe-cccccCCC-CCCCHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 6667776 3356789999999999998887 79999999 88887653 345777889999999999999999999999
Q ss_pred ec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCC--CCCCcEEEEEEEeeCCCccee
Q 009230 458 AH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA--GPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 458 ~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~--~~~~~~~l~i~K~R~g~~G~~ 521 (539)
+| ||..+++.+++|.++||+||++|+|.||+|++|+|++..+. ...+.+++.|.|||||++|.+
T Consensus 351 sQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~R~~~~~~~~~~~~~~el~v~K~R~G~~g~~ 417 (421)
T TIGR03600 351 AQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIHREGYYDAREPPAGVAELILAKNRHGPTGTV 417 (421)
T ss_pred cccCcchhhcCCCCCChHHHhhcCCccccCcEEEEeccccccCCccCCCCceEEEEECCCCCCCceE
Confidence 99 99988888899999999999999999999999999875432 223679999999999999986
No 19
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=100.00 E-value=3.1e-36 Score=295.68 Aligned_cols=254 Identities=24% Similarity=0.297 Sum_probs=203.7
Q ss_pred ccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc
Q 009230 278 EFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 278 ~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~ 356 (539)
..++||||+.||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||+.+++..|+++..+++++..
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~ 89 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRLHL 89 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCccc
Confidence 3599999999999998 999999999999999999999999999988669999999999999999999999888887754
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhcc-ceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHH
Q 009230 357 ANYGGSAERMTVEEFEQGKAWLSNT-FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~~~l~~~-~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~ 435 (539)
... ....+.+++..+.+.+.+. .+++ .+..+..+++++++.++.++.++++++||||++..+........++...
T Consensus 90 ~~~---~~~~~~~~~~~~~~~~~~~~~l~i-~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~ 165 (271)
T cd01122 90 PDT---VFIYTLEEFDAAFDEFEGTGRLFM-YDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKA 165 (271)
T ss_pred CCc---cccccHHHHHHHHHHhcCCCcEEE-EcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHH
Confidence 421 1235566666666666432 2333 2334455899999999999888999999999776665432123455566
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEec-CCCCCCC---CCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEE
Q 009230 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW---VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVR 511 (539)
Q Consensus 436 ~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~---~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~ 511 (539)
+.+++..|+.+|++++|+|++++| ++....+ .+.+|+++|++||+.+++.||.||.|+++++.|...++...|.+.
T Consensus 166 ~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r~~~~e~~~~~~~~i~v~ 245 (271)
T cd01122 166 LDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALERNQQAELDERNTTYLRIL 245 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEecCccccccCCcEEEEEE
Confidence 789999999999999999999999 6644332 246899999999999999999999999987643233467889999
Q ss_pred EeeCC-CcceeeeEEEEEeCCCceecc
Q 009230 512 KVRNK-VVGTIGEAFLSYNRVTGEYMD 537 (539)
Q Consensus 512 K~R~g-~~G~~~~~~l~fd~~~~rf~~ 537 (539)
|+|++ .+|.. +.+.||++|+||..
T Consensus 246 K~R~~~~~g~~--~~~~~~~~t~~~~~ 270 (271)
T cd01122 246 KNRFTGGTGVA--GPLEYDKETGRLSP 270 (271)
T ss_pred eeccCCCccce--eeEEEECCCceecC
Confidence 99985 55542 58999999999974
No 20
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=100.00 E-value=2.6e-36 Score=291.36 Aligned_cols=234 Identities=20% Similarity=0.268 Sum_probs=196.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCC
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~ 365 (539)
+||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||++++++.|+++..++++...+..+ .
T Consensus 2 ~LD~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~----~ 77 (242)
T cd00984 2 DLDNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTG----S 77 (242)
T ss_pred chhhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcC----C
Confidence 5899998 9999999999999999999999999999997799999999999999999999999999998887755 5
Q ss_pred CCHHHHHH---HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHH
Q 009230 366 MTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442 (539)
Q Consensus 366 l~~~~~~~---~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~ 442 (539)
++.+++.. +...+...++++. ..+..++++|.+.++.++.++++++||||++..+.... ...++.+.+..+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~-~~~~~~~~~~~~~~~ 154 (242)
T cd00984 78 LSDEDWERLAEAIGELKELPIYID--DSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK-KKGNRQQEVAEISRS 154 (242)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEe--CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC-CCCCHHHHHHHHHHH
Confidence 66555443 3445555566653 24567899999999999999999999999665444322 245677889999999
Q ss_pred HHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC--CCCCCCcEEEEEEEeeCCCcc
Q 009230 443 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQVCVRKVRNKVVG 519 (539)
Q Consensus 443 Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~--~~~~~~~~~l~i~K~R~g~~G 519 (539)
|+.||+++||+||+++| +|...++.+++|++++++||+.++|.||.||.|+|++.. +...++..+|.|.|||+|+.|
T Consensus 155 L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~~~~~~~~~~~~~~~~l~v~KnR~G~~g 234 (242)
T cd00984 155 LKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYRDEYYNKESESKGIAEIIVAKNRNGPTG 234 (242)
T ss_pred HHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEecccccccccCCCCceEEEEECCCCCCCe
Confidence 99999999999999999 887655556789999999999999999999999998742 233467899999999998877
Q ss_pred eeeeEEEEEeC
Q 009230 520 TIGEAFLSYNR 530 (539)
Q Consensus 520 ~~~~~~l~fd~ 530 (539)
++ .+.|+|
T Consensus 235 ~~---~l~~~~ 242 (242)
T cd00984 235 TV---ELRFDG 242 (242)
T ss_pred eE---EEEeeC
Confidence 64 788886
No 21
>PRK07773 replicative DNA helicase; Validated
Probab=100.00 E-value=7e-32 Score=301.58 Aligned_cols=219 Identities=21% Similarity=0.253 Sum_probs=190.4
Q ss_pred hHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 263 YFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 263 ~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
+++++++..++ .+...|+||||+.||++++ |++|+|++|+|+||+|||+|++++|.++|.++|.+|+|||+||+.+++
T Consensus 183 ~~~~i~~~~~~-~~~~~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql 261 (886)
T PRK07773 183 TFDEIDAIASS-GGLARGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQL 261 (886)
T ss_pred HHHHHHHHHhc-CCCCCCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHH
Confidence 34445554332 4557899999999999998 999999999999999999999999999998778999999999999999
Q ss_pred HHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Q 009230 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~ 418 (539)
+.|+++..++++..+++.+ .++.+++..+ ...+.+.+++| ++.+..++++|.+.+++++.++++++||||
T Consensus 262 ~~R~~s~~~~i~~~~i~~g----~l~~~~~~~~~~a~~~l~~~~i~i--~d~~~~~i~~i~~~~r~~~~~~~~~lvvID- 334 (886)
T PRK07773 262 VMRLLSAEAKIKLSDMRSG----RMSDDDWTRLARAMGEISEAPIFI--DDTPNLTVMEIRAKARRLRQEANLGLIVVD- 334 (886)
T ss_pred HHHHHHHhcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEE--ECCCCCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 9999999999999999865 7888887654 45666777887 346677899999999999999999999999
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceE
Q 009230 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNG 489 (539)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~v 489 (539)
|++++.......++.+.+.++++.||.||+++|||||+++| ||..+++.+++|.++|||+|+.+++.+-++
T Consensus 335 yLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~~d~~V~ 406 (886)
T PRK07773 335 YLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLTGDTLIL 406 (886)
T ss_pred chhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCcccCcceEE
Confidence 88888754334677788999999999999999999999999 999998889999999999999999866554
No 22
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=99.95 E-value=8.4e-28 Score=246.67 Aligned_cols=181 Identities=28% Similarity=0.390 Sum_probs=144.4
Q ss_pred CCCcHHHHHHHHhcCCCHHHHHHcCcccccCC------------------------------------ceeEEEEeEe-e
Q 009230 46 EPLGNELRAYFAERLISAETLRRNRVMQKRHG------------------------------------HEVVIAFPYW-R 88 (539)
Q Consensus 46 ~p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~------------------------------------~~~~i~fP~~-~ 88 (539)
.|.+..+.+||.+|||++++++.|++++...+ .+++|+||++ .
T Consensus 131 ~~~~~~a~~YL~~RGis~e~i~~f~lGyap~~~~~l~~~l~~k~~~~~~~l~~~Gl~~~~~~g~~~d~Fr~RiifPi~d~ 210 (415)
T TIGR01391 131 TPENRAALDYLQSRGLSDETIDRFELGYAPNNWDFLFDFLQNKKGFDLELLAEAGLLVKKENGKYYDRFRNRIMFPIHDP 210 (415)
T ss_pred CccchHHHHHHHHcCCCHHHHHHcCCCCCCCcHHHHHHHHHhccCCCHHHHHHCCCeEECCCCCeeeecCCeEEEEEECC
Confidence 34355678999999999999999987543211 1358999988 7
Q ss_pred CCEEEEEEeecC---CCcccccCC-----CCCcccccccc----CCCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCC
Q 009230 89 NGKLVNCKYRDF---NKKFWQEKD-----TEKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 156 (539)
Q Consensus 89 ~G~~~~~~~R~~---~~~~~~~~~-----~~~~l~g~~~~----~~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~ 156 (539)
.|++++|.+|.+ .+||.+++. +...+||++.. .+.++|+||||++||||++|+|+.++|++. |++.
T Consensus 211 ~G~vvgf~gR~~~~~~pKYlNspet~~f~K~~~lygl~~a~~~~~~~~~viivEG~~Daisl~~~G~~~aVA~~-Gtal- 288 (415)
T TIGR01391 211 KGRVVGFGGRALGDEKPKYLNSPETPLFKKSELLYGLHKARKEIRKEKELILVEGYMDVIALHQAGIKNAVASL-GTAL- 288 (415)
T ss_pred CCCEEEEEeeecCCCCCceeCCCCCCCccCCccccCHhHHHHhhccCCcEEEEecHHHHHHHHHCCCCcEEECC-CCCC-
Confidence 899999999988 467887653 47789999864 346789999999999999999999888865 5532
Q ss_pred CCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHHHHHHHhcC--CceEEEecCCCCCCCCCCChHHH
Q 009230 157 VSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEV 233 (539)
Q Consensus 157 ~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~~~~~~l~~--~~~~~~~~p~~~~~~~~kD~nd~ 233 (539)
. ..++..|.+ .++||+|+|+|.||++|+.++++.+.. ..++++.+| .+|||||+
T Consensus 289 ------t-----------~~~~~~l~r~~~~vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~~lp------~gkDpdd~ 345 (415)
T TIGR01391 289 ------T-----------EEHIKLLKRYADEIILCFDGDKAGRKAALRAIELLLPLGINVKVIKLP------GGKDPDEY 345 (415)
T ss_pred ------c-----------HHHHHHHHhhCCeEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECC------CCCCHHHH
Confidence 1 112344544 469999999999999999999888843 457788887 58999999
Q ss_pred HHhcCcchHHHHHHhccc
Q 009230 234 LMYLGPGALKEVVENAEL 251 (539)
Q Consensus 234 l~~~g~~~~~~~~~~A~~ 251 (539)
+++.|.+++.+++++|.+
T Consensus 346 l~~~g~~~~~~~l~~a~~ 363 (415)
T TIGR01391 346 LRKEGVEALKKLLENSKS 363 (415)
T ss_pred HHHhCHHHHHHHHhcCCC
Confidence 999999999999999875
No 23
>PRK05667 dnaG DNA primase; Validated
Probab=99.95 E-value=3e-27 Score=250.19 Aligned_cols=182 Identities=27% Similarity=0.423 Sum_probs=146.9
Q ss_pred CCCcHHHHHHHHhcCCCHHHHHHcCcccccCC------------------------------------ceeEEEEeEe-e
Q 009230 46 EPLGNELRAYFAERLISAETLRRNRVMQKRHG------------------------------------HEVVIAFPYW-R 88 (539)
Q Consensus 46 ~p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~------------------------------------~~~~i~fP~~-~ 88 (539)
.|.++.+.+||.+|||++++++.|++++...+ .+++|+||++ .
T Consensus 127 ~~~~~~a~~YL~~RGls~~~i~~f~lGyap~~~~~L~~~l~~~~~~~~~l~~~GL~~~~~~~~~~yd~Fr~RimfPI~d~ 206 (580)
T PRK05667 127 TPEGAEARQYLYKRGLSEETIERFGIGYAPDGWDALLKHLGGKGFSEKELEEAGLLIKNEDGGGPYDRFRNRIMFPIRDL 206 (580)
T ss_pred CccchHHHHHHHHcCCCHHHHHHhCCccCCChHHHHHHHHHhcCCCHHHHHHCCceEecCCCCCcchhcCCeEEEEEECC
Confidence 45667789999999999999999988643211 1468999988 7
Q ss_pred CCEEEEEEeecC---CCcccccC-----CCCCccccccccC----CCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCC
Q 009230 89 NGKLVNCKYRDF---NKKFWQEK-----DTEKVFYGLDDIE----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 156 (539)
Q Consensus 89 ~G~~~~~~~R~~---~~~~~~~~-----~~~~~l~g~~~~~----~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~ 156 (539)
.|++++|.+|.+ .+||.+++ .++..+||++... +.++|+||||++|+||++|+|+.++|++. |++.
T Consensus 207 ~G~vigF~GR~l~~~~pKYlNSpet~iF~K~~~LYgl~~a~~~i~~~~~viivEG~~Dvisl~q~Gi~naVA~l-Gtal- 284 (580)
T PRK05667 207 RGRVIGFGGRVLGDDKPKYLNSPETPLFHKGRVLYGLDEARKAIAKKKQVIVVEGYMDVIALHQAGITNAVASL-GTAL- 284 (580)
T ss_pred CCcEEEEEeeecCCCCCeeeCCCCCCCccCCccccCccHHHHhcccCCeEEEEeeHHHHHHHHHcCCCcEEEeC-CCCC-
Confidence 899999999988 37888866 3468899998754 46799999999999999999999988864 5532
Q ss_pred CCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHHHHHHH---h--cCCceEEEecCCCCCCCCCCCh
Q 009230 157 VSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARR---V--GRERCWRVRWPKKNDVDHFKDA 230 (539)
Q Consensus 157 ~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~~~~~~---l--~~~~~~~~~~p~~~~~~~~kD~ 230 (539)
. ..++..|.+ ..+||+|+|+|.||++|+.++++. + .+..++++.+| .+|||
T Consensus 285 ------t-----------~~~~~~L~r~~~~vil~~D~D~AG~~aa~r~~~~~~~l~~~g~~v~vv~lp------~gkDp 341 (580)
T PRK05667 285 ------T-----------EEHLKLLRRLTDEVILCFDGDKAGRKAALRALELALPLLKDGRQVRVAFLP------DGKDP 341 (580)
T ss_pred ------C-----------HHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCceEEEEECC------CCCCh
Confidence 1 122445554 358999999999999999998887 4 23467888888 58999
Q ss_pred HHHHHhcCcchHHHHHHhcccc
Q 009230 231 NEVLMYLGPGALKEVVENAELY 252 (539)
Q Consensus 231 nd~l~~~g~~~~~~~~~~A~~~ 252 (539)
||+++++|.+++.+++++|.++
T Consensus 342 dd~l~~~G~~~~~~~i~~a~~~ 363 (580)
T PRK05667 342 DDLVRKEGPEAFRALLEQAIPL 363 (580)
T ss_pred HHHHHHhCHHHHHHHHHcCCCH
Confidence 9999999999999999998753
No 24
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=99.95 E-value=1.8e-26 Score=209.12 Aligned_cols=175 Identities=21% Similarity=0.310 Sum_probs=140.7
Q ss_pred HHHHHHHHhcCCCHHHHHHcCcccccCCceeEEEEeEe-eCCEEEEEEeecC--CCcccccC-----CCCCcccccccc-
Q 009230 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDF--NKKFWQEK-----DTEKVFYGLDDI- 120 (539)
Q Consensus 50 ~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~~~~~i~fP~~-~~G~~~~~~~R~~--~~~~~~~~-----~~~~~l~g~~~~- 120 (539)
..+..||+++|++...+-..|....|.+...+|+||++ ..|++|+|.+|.+ .++|++++ .++..+||++..
T Consensus 28 ~~l~~~l~~~g~~~~~~~~~G~~~~y~~~~~RimFPI~d~~G~vvgFgGR~l~~~~KYlNspet~~f~K~~~Lygl~~~~ 107 (218)
T TIGR00646 28 RCAMNYLKKRGFNLQDFLKVGGGLAYLGEKEWLNLPLYNFDGNLIGFLNRKVGFEKEFLYLPFNKPPSKSEAFLGLKELP 107 (218)
T ss_pred HHHHHHHHHcCCCHHHHHHcCCCEEecccCCEEEEEEECCCCCEEEEeccCCCCCCCcccCCCCCCcccchhhcCcchhh
Confidence 45899999999999999999854456777789999988 8999999999999 58899866 457779998544
Q ss_pred CCCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc--CCEEEEEecCCccch
Q 009230 121 EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ--ASRIILATDGDPPGQ 198 (539)
Q Consensus 121 ~~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~--~~~ivl~~DnD~~G~ 198 (539)
.+.+.++||||.||++|++|+|+.++|+. +|++-. ..++..|++ .++|+||+|+|.||+
T Consensus 108 ~k~~~vilvEGymDVIsl~qaGi~naVAs-lGTALT------------------~~q~~lLkr~~~~~Iil~~D~D~AG~ 168 (218)
T TIGR00646 108 IEDNSIYLVEGDFDWLAFRKAGILNCLPL-CGLTIS------------------DKQMKFFKQKKIEKIFICFDNDFAGK 168 (218)
T ss_pred cCCCEEEEEecHHHHHHHHHCCCCeEEEc-CchHhH------------------HHHHHHHhccCCCEEEEEeCCCHHHH
Confidence 44678999999999999999999998874 566521 122455665 479999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHHhc
Q 009230 199 ALAEELARRVG--RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENA 249 (539)
Q Consensus 199 ~~~~~~~~~l~--~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~~A 249 (539)
+|+.++.+.+. +..+.++.+| ..+|||||+++..+ +...+++.++
T Consensus 169 ~Aa~r~~~~L~~~G~~v~vv~lP-----~~~KDwNEllk~~~-~~w~~~l~~~ 215 (218)
T TIGR00646 169 NAAANLEEILKKAGFITKVIEIK-----AAAKDWNDLFLLNN-KNWAAALRDH 215 (218)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CcCCChhHHHHHhh-hhHHHHHHhh
Confidence 99999999883 4567888888 57899999999765 3345555553
No 25
>PHA02540 61 DNA primase; Provisional
Probab=99.92 E-value=4.8e-25 Score=214.76 Aligned_cols=175 Identities=19% Similarity=0.312 Sum_probs=131.9
Q ss_pred CCcHHHHHHHHhcCCCHHHHHHcCcccccC--------------CceeEEEEeEe-eCCEEEEEEeecCC----Cccccc
Q 009230 47 PLGNELRAYFAERLISAETLRRNRVMQKRH--------------GHEVVIAFPYW-RNGKLVNCKYRDFN----KKFWQE 107 (539)
Q Consensus 47 p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~--------------~~~~~i~fP~~-~~G~~~~~~~R~~~----~~~~~~ 107 (539)
|....+++||++|||++++++.++....+. ..+++|+||++ ..|++++|.+|.++ +||.+.
T Consensus 125 ~~~~~a~~YL~~RGi~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~d~~RImFPI~d~~G~vigFgGR~l~~~~~pKYlNS 204 (337)
T PHA02540 125 PEDHPIIKYVENRCIPKDKWKLLYFTREWQKLVNSIKPDTYKKEKPEPRLVIPIFNKDGKIESFQGRALRKDAPQKYITI 204 (337)
T ss_pred cccHHHHHHHHHcCCCHHHHHhcCCCccHHHHHHHHhhccCchhccCCeeEEEEECCCCCEEEEEeEECCCCCCCCeeeC
Confidence 455679999999999999999876422110 12489999988 89999999999993 588886
Q ss_pred C--CCCCccccccccCCCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCC
Q 009230 108 K--DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQAS 185 (539)
Q Consensus 108 ~--~~~~~l~g~~~~~~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~ 185 (539)
+ .+...|||++.+.+.+.++||||.+|+++ +.|+|+. .|++-.. . ...--+
T Consensus 205 p~f~K~~~LYGl~~a~~~~~vilvEGYmDvi~-----i~naVAt-lGTaLT~-------~--------------~~~~~~ 257 (337)
T PHA02540 205 KADEEATKIYGLDRIDPGKTVYVVEGPIDSLF-----LPNSIAI-TGGDLDL-------N--------------EVPFKD 257 (337)
T ss_pred CcccccccccChhHhccCCEEEEEeCCcceee-----eccceee-CccccCH-------h--------------HhCccc
Confidence 5 56788999999988899999999999997 4677874 4665321 1 111135
Q ss_pred EEEEEecCCccchHHHHHHHHHhcCCceEEEecCCCCCCCCCCChHHHHHhcCc--chHHHHHHhccc
Q 009230 186 RIILATDGDPPGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGP--GALKEVVENAEL 251 (539)
Q Consensus 186 ~ivl~~DnD~~G~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~--~~~~~~~~~A~~ 251 (539)
+|||++||| +|.+|+-+..+.|-...+.++.||.. +.++|||||++++.|. +++.++++++..
T Consensus 258 ~vvl~~D~D-a~~~at~r~~~~l~~~g~~v~v~~~~--~~~~kDpde~i~~~G~~~~~~~~~i~~n~~ 322 (337)
T PHA02540 258 TRVWVLDNE-PRHPDTIKRISKLIDAGEKVVIWDKC--PWPSKDINDMIMKGGATPEDIMEYIKSNTY 322 (337)
T ss_pred eEEEEECCc-hhHHHHHHHHHHHHHCCCeEEEecCC--CCCCcCHHHHHHhcCCCHHHHHHHHHHccc
Confidence 899999999 66677766667774445666777731 1257999999999875 888888887753
No 26
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-23 Score=201.49 Aligned_cols=200 Identities=17% Similarity=0.219 Sum_probs=158.6
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
.....++||+.+||+++| +.||++++|+|.||.||||+++|++..+|.+ + +|||+|.|++..++..|... +|++
T Consensus 70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEES~~QiklRA~R--L~~~ 145 (456)
T COG1066 70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEESLQQIKLRADR--LGLP 145 (456)
T ss_pred eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCcCHHHHHHHHHH--hCCC
Confidence 445689999999999997 9999999999999999999999999999986 6 99999999999999766532 3322
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-CCCCH
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTE 432 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~-~~~~~ 432 (539)
.. .+++ -...++++|.+.++ +.+++++||||+..+....- +..-.
T Consensus 146 ~~--------------------------~l~l----~aEt~~e~I~~~l~----~~~p~lvVIDSIQT~~s~~~~SapGs 191 (456)
T COG1066 146 TN--------------------------NLYL----LAETNLEDIIAELE----QEKPDLVVIDSIQTLYSEEITSAPGS 191 (456)
T ss_pred cc--------------------------ceEE----ehhcCHHHHHHHHH----hcCCCEEEEeccceeecccccCCCCc
Confidence 11 1222 23456777776664 47899999999998876542 22233
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 433 ~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
-.++.+....|.++||+.|++++++.|..|.. .|.|-..+|...|+|+.++.+... ..+.+.-.|
T Consensus 192 VsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG----------~IAGPrvLEHmVDtVlyFEGd~~~-----~~RiLR~vK 256 (456)
T COG1066 192 VSQVREVAAELMRLAKTKNIAIFIVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDRHS-----RYRILRSVK 256 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEEcccc----------cccCchheeeeeeEEEEEeccCCC-----ceeeeehhc
Confidence 45788999999999999999999999944432 367778899999999999876542 256677889
Q ss_pred eeCCCcceeeeEEEEE
Q 009230 513 VRNKVVGTIGEAFLSY 528 (539)
Q Consensus 513 ~R~g~~G~~~~~~l~f 528 (539)
||.|.++++|.+.|.=
T Consensus 257 NRFG~t~EiGvFeM~~ 272 (456)
T COG1066 257 NRFGATNELGVFEMTE 272 (456)
T ss_pred ccCCcccceeEEEEec
Confidence 9999999999777653
No 27
>PRK05973 replicative DNA helicase; Provisional
Probab=99.90 E-value=6.4e-23 Score=192.46 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=129.1
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCC
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 364 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 364 (539)
...|+++| |++|++++|+|+||+|||+|++|++.+.+.+ |.+|+|||+||+++++..|+.+. |++..
T Consensus 52 ~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes~~~i~~R~~s~--g~d~~--------- 119 (237)
T PRK05973 52 TPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYTEQDVRDRLRAL--GADRA--------- 119 (237)
T ss_pred CCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCCHHHHHHHHHHc--CCChH---------
Confidence 34788888 9999999999999999999999999999986 99999999999999999999764 43322
Q ss_pred CCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHH
Q 009230 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444 (539)
Q Consensus 365 ~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk 444 (539)
++. + .+.+.. .+..+.+.++ +++..++++++|||| +.+++... . +...+..++..|+
T Consensus 120 -----~~~-------~-~~~~d~--~d~~~~~~ii---~~l~~~~~~~lVVID-sLq~l~~~--~--~~~el~~~~~~Lk 176 (237)
T PRK05973 120 -----QFA-------D-LFEFDT--SDAICADYII---ARLASAPRGTLVVID-YLQLLDQR--R--EKPDLSVQVRALK 176 (237)
T ss_pred -----Hhc-------c-ceEeec--CCCCCHHHHH---HHHHHhhCCCEEEEE-cHHHHhhc--c--cchhHHHHHHHHH
Confidence 111 1 122211 2233455543 344556789999999 44544321 1 1123677788999
Q ss_pred HHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 445 RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 445 ~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
.+|+++|++||+++| +|..+.+.+++|.++|+| +.+.+|..++.++
T Consensus 177 ~~Ak~~gitvIl~sQl~r~~e~~~~~~P~laDlR----~~~~~d~~~f~~~ 223 (237)
T PRK05973 177 SFARERGLIIVFISQIDRSFDPSAKPLPDIRDVR----LPNPLDLSLFDKA 223 (237)
T ss_pred HHHHhCCCeEEEEecCccccccCCCCCCChhhcC----CCChhhHHHhhhh
Confidence 999999999999999 999988888999999998 4668888777654
No 28
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.7e-23 Score=222.27 Aligned_cols=220 Identities=25% Similarity=0.370 Sum_probs=161.7
Q ss_pred CcccccCCCCCCccccccc----cccc----------------------hhhhhhcccchhhhcccccCCCCCCcHHHHH
Q 009230 1 MCFRAKCGWKGSTSALVDN----NRSQ----------------------SSLKKFSKMKTIREITEDSLELEPLGNELRA 54 (539)
Q Consensus 1 ~C~~~~cg~~~~~~~~~~~----~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 54 (539)
+|| +||++|++..|+.+ .|.+ ..............++...+. |...++++
T Consensus 57 hCF--GCg~~Gd~i~Fl~~~~g~sf~eav~~La~~~gi~~~~~~~~~~~~~~~l~~~~~~~~~fy~~~L~--~~~~~a~~ 132 (568)
T COG0358 57 HCF--GCGAGGDAIKFLMELLGLSFDEAVLQLAGRAGIELPYEKGKRIEKRQKLYDGKEEAAIFYQSSLD--PEGAAALK 132 (568)
T ss_pred ecC--CCCCCccHHHHHHHhcCCCHHHHHHHHHHHhCCCCCccccccchhHHHHHHHHHHHHHHHHHHHH--hchHHHHH
Confidence 599 99999997766654 1211 011111111222233334444 66677889
Q ss_pred HHHhcCCCHHHHHHcCcccccC---------------------------------CceeEEEEeEe-eCCEEEEEEeecC
Q 009230 55 YFAERLISAETLRRNRVMQKRH---------------------------------GHEVVIAFPYW-RNGKLVNCKYRDF 100 (539)
Q Consensus 55 Yl~~Rgi~~~~~~~~~~~~~~~---------------------------------~~~~~i~fP~~-~~G~~~~~~~R~~ 100 (539)
||.+||++.++++.|++++... ...++|+||++ ..|++++|.+|.+
T Consensus 133 yL~~Rgls~~~i~~f~iG~ap~~~~~~~~~~k~~~~~~~l~~~Gl~~~~~~~~ydrFr~RImfPI~d~~g~vigFggR~l 212 (568)
T COG0358 133 YLETRGLAAELIAHFRLGYAPPNDSLLPFLAKKEYREEKLEDLGLLKRKEGKIYDRFRNRIMFPIRDLRGDVIGFGGRVL 212 (568)
T ss_pred HHHHcCCCHHHHHHhCCCCCCCchHHHHHHhcCCcCHHHHHHCCCeecCCCceeehhcCeeEEeccCCCCCEEeeecccc
Confidence 9999999999999998872211 02479999988 7899999999998
Q ss_pred ---CCcccccC-----CCCCccccccccC----CCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhh
Q 009230 101 ---NKKFWQEK-----DTEKVFYGLDDIE----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQD 168 (539)
Q Consensus 101 ---~~~~~~~~-----~~~~~l~g~~~~~----~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~ 168 (539)
.+||++++ .++..+||++... +.+.++||||++|+++++++|+.+|||+ .|++..
T Consensus 213 ~~~~~KYlNspet~if~Kg~~Lyg~~~a~~~~~~~~~iivVEGymDViaL~~aGi~naVA~-lGTalt------------ 279 (568)
T COG0358 213 GDDKPKYLNSPETELFKKGEELYGLDPARKKIAKADQIIVVEGYMDVIALHKAGIKNAVAS-LGTALT------------ 279 (568)
T ss_pred CCCCCcccCCCCCcCccCcHHhhCHHHHHHhhccCCeEEEEechHHHHHHHHcCCcceeec-ccccCC------------
Confidence 47888866 4577889988753 3678999999999999999999999995 566531
Q ss_pred hhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHHHHHHHh---cCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHH
Q 009230 169 TKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARRV---GRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKE 244 (539)
Q Consensus 169 ~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~~~~~~l---~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~ 244 (539)
..++..|.+ ..+|++|+|+|.||++|+.++.+.. ....+.++.+| .+|||+|++++.|.+++..
T Consensus 280 ------~ehi~~L~r~~~~vil~fDgD~AG~~Aa~ral~~~~~~~~~~v~v~~~P------~GkDpDel~~k~g~~al~~ 347 (568)
T COG0358 280 ------EEHIKLLSRGKKKVILCFDGDRAGRKAAKRALQLVLPLDFVGVFVILLP------DGKDPDELIRKEGAEALRK 347 (568)
T ss_pred ------HHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHHhhhhccCCeEEEECC------CCCChHHHHHHhChHHHHH
Confidence 123445555 4569999999999999977776643 22237888998 4699999999999999888
Q ss_pred HHHhc
Q 009230 245 VVENA 249 (539)
Q Consensus 245 ~~~~A 249 (539)
.+.++
T Consensus 348 ~l~~~ 352 (568)
T COG0358 348 KLPNE 352 (568)
T ss_pred HHHhC
Confidence 88774
No 29
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.90 E-value=4e-22 Score=200.60 Aligned_cols=197 Identities=17% Similarity=0.216 Sum_probs=149.8
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....++||+++||++++ +.+|++++|+|+||+|||+|++|++.+++.. |.+|+|++.|++..++..|... .+++.
T Consensus 60 ~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EEs~~qi~~Ra~r--lg~~~ 136 (372)
T cd01121 60 EEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEESPEQIKLRADR--LGIST 136 (372)
T ss_pred ccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCcCHHHHHHHHHH--cCCCc
Confidence 45689999999999996 9999999999999999999999999999885 8899999999999988776532 22211
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-CCCCHH
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTET 433 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~-~~~~~~ 433 (539)
+.+.++ ...+++.|.+.+ ...++++||||++..+..... +.....
T Consensus 137 -------------------------~~l~l~-----~e~~le~I~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~~ 182 (372)
T cd01121 137 -------------------------ENLYLL-----AETNLEDILASI----EELKPDLVIIDSIQTVYSSELTSAPGSV 182 (372)
T ss_pred -------------------------ccEEEE-----ccCcHHHHHHHH----HhcCCcEEEEcchHHhhccccccCCCCH
Confidence 111222 233466666554 456899999999887754321 112234
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEe
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~ 513 (539)
.++.+++..|.++|+++++++++++|..+.. .+.|+..+++.+|+||.++.++.. ....+.+.|+
T Consensus 183 ~qvr~~~~~L~~lak~~~itvilvghvtk~g----------~~aG~~~leh~vD~Vi~le~~~~~-----~~R~Lri~Kn 247 (372)
T cd01121 183 SQVRECTAELMRFAKERNIPIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDRHS-----EYRILRSVKN 247 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeeccCCC----------cccCcccchhhceEEEEEEcCCCC-----cEEEEEEEeC
Confidence 5678889999999999999999999943321 256777899999999999876531 2567899999
Q ss_pred eCCCcceeeeEE
Q 009230 514 RNKVVGTIGEAF 525 (539)
Q Consensus 514 R~g~~G~~~~~~ 525 (539)
|.|++++++.+.
T Consensus 248 R~g~~~ei~~F~ 259 (372)
T cd01121 248 RFGSTNELGVFE 259 (372)
T ss_pred CCCCCCCEEEEE
Confidence 999988876443
No 30
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.89 E-value=8.6e-22 Score=190.49 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=146.7
Q ss_pred cccccCchhhhhhh---------------c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 279 FGISTGWRALNELY---------------N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 279 ~gi~tg~~~LD~~~---------------~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
-|+|||+++||+++ | +++|.+++|+|+||+|||+|++|++.+.+.+ |.+|+|+|+|++++.+.
T Consensus 2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~~~~ 80 (259)
T TIGR03878 2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPANFVY 80 (259)
T ss_pred CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCchHHH
Confidence 37899999999997 6 9999999999999999999999999999986 99999999999988777
Q ss_pred HHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCC--CCCHHHHHHHHHHHHHHcCCcEEEEcccc
Q 009230 343 RKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS--LPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420 (539)
Q Consensus 343 ~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~--~~~~~~i~~~i~~~~~~~~~~~vvID~~~ 420 (539)
.++........ ++.+ .+.++++++...... ..+++++...+..++.++++++|||||++
T Consensus 81 ~~l~~~a~~~g------------~d~~-------~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls 141 (259)
T TIGR03878 81 TSLKERAKAMG------------VDFD-------KIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSIT 141 (259)
T ss_pred HHHHHHHHHcC------------CCHH-------HHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCch
Confidence 66643322111 1111 122344554221100 13567788888888888999999999998
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC--
Q 009230 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP-- 498 (539)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~-- 498 (539)
.+... . .....+++..|..+++++++++++++|.+..... ... +..+...++..+|.+|.|......
T Consensus 142 ~l~~~-----~-~~~~r~~~~~L~~~lk~~~~t~ll~~e~~~~~~~----~~~-~~~~~~~~~~l~D~vI~L~~~~~~~~ 210 (259)
T TIGR03878 142 GLYEA-----K-EMMAREIVRQLFNFMKKWYQTALFVSQKRSGHEE----LSA-EAAGGYAVSHIVDGTIVLAKQLIMSR 210 (259)
T ss_pred Hhccc-----c-hHHHHHHHHHHHHHHHHcCCeEEEEeccccCccc----ccc-cccCCcceeEeeccEEEEeeeeccch
Confidence 77532 1 1335677888899999999999999994332110 111 233444588999999999853211
Q ss_pred -------CCCCCCcEEEEEEEeeCCCc
Q 009230 499 -------EAGPIDRVQVCVRKVRNKVV 518 (539)
Q Consensus 499 -------~~~~~~~~~l~i~K~R~g~~ 518 (539)
+....-...+.|.|.|....
T Consensus 211 ~~~~~~~~~~~~~~R~l~I~KmRg~~h 237 (259)
T TIGR03878 211 FDASLYKKPIGEIVRLFRIDGCRMCGH 237 (259)
T ss_pred hhhhhccccccceEEEEEEEEccCCCC
Confidence 11112246689999998644
No 31
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.88 E-value=2.7e-21 Score=200.18 Aligned_cols=200 Identities=18% Similarity=0.246 Sum_probs=149.6
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
....+++||+++||++++ +.+|++++|+|+||+|||||++|++.+++.+ |.+|+|+|+|++..++..|... .+++
T Consensus 71 ~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EEs~~qi~~ra~r--lg~~ 147 (454)
T TIGR00416 71 EEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEESLQQIKMRAIR--LGLP 147 (454)
T ss_pred cccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcCCHHHHHHHHHH--cCCC
Confidence 345689999999999995 9999999999999999999999999999885 8899999999999988777542 1221
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-CCCCH
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTE 432 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~-~~~~~ 432 (539)
. + ..+++ ...+++.|.+.+ .+.++++|||||+..+..... +....
T Consensus 148 ~--------------~-----------~l~~~-----~e~~~~~I~~~i----~~~~~~~vVIDSIq~l~~~~~~~~~g~ 193 (454)
T TIGR00416 148 E--------------P-----------NLYVL-----SETNWEQICANI----EEENPQACVIDSIQTLYSPDISSAPGS 193 (454)
T ss_pred h--------------H-----------HeEEc-----CCCCHHHHHHHH----HhcCCcEEEEecchhhcccccccCCCC
Confidence 1 0 11222 223456555444 457899999999888764321 11122
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 433 ~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
..++.+++..|.++|+++|+++++++|..+.. .+.|+..+++.+|.||.|...+. .....+.+.|
T Consensus 194 ~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg----------~~aG~~~le~lvD~VI~Le~~~~-----~~~R~L~v~K 258 (454)
T TIGR00416 194 VSQVRECTAELMRLAKTRGIAIFIVGHVTKEG----------SIAGPKVLEHMVDTVLYFEGDRD-----SRFRILRSVK 258 (454)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccCC----------ccCCcccEeeeceEEEEEeccCC-----CcEEEEEEec
Confidence 34567888999999999999999999943321 35677789999999999987442 1246788999
Q ss_pred eeCCCcceeeeEEEE
Q 009230 513 VRNKVVGTIGEAFLS 527 (539)
Q Consensus 513 ~R~g~~G~~~~~~l~ 527 (539)
+|.|++++++.+.+.
T Consensus 259 ~R~g~~~e~~~f~it 273 (454)
T TIGR00416 259 NRFGATNEIGIFEMT 273 (454)
T ss_pred CCCCCCCcEEEEEEe
Confidence 999998887655444
No 32
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.88 E-value=3.2e-21 Score=199.74 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=148.1
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
.....++||+++||++++ +.+|++++|+|+||+|||+|++|++.+.+.+ |.+|+|+++|++.+++..|+.. .|.+
T Consensus 57 ~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~r--lg~~ 133 (446)
T PRK11823 57 EEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAER--LGLP 133 (446)
T ss_pred ccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHH--cCCC
Confidence 345689999999999996 9999999999999999999999999999875 8999999999999998777532 2322
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-CCCCH
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VSQTE 432 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~-~~~~~ 432 (539)
.. . +++ ....+++.+.+.+ .+.++++||||++..+....- +....
T Consensus 134 ~~-------------------------~-l~~----~~e~~l~~i~~~i----~~~~~~lVVIDSIq~l~~~~~~~~~g~ 179 (446)
T PRK11823 134 SD-------------------------N-LYL----LAETNLEAILATI----EEEKPDLVVIDSIQTMYSPELESAPGS 179 (446)
T ss_pred hh-------------------------c-EEE----eCCCCHHHHHHHH----HhhCCCEEEEechhhhccccccCCCCC
Confidence 11 1 222 1233466655544 456899999999887764321 11223
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 433 ~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
..++.+++..|.++|+++|+++++++|..+.. .+.|+..+++.+|.||.+..+.. ...+.+.+.|
T Consensus 180 ~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~----------~~ag~~~lehlvD~Vi~le~~~~-----~~~R~l~i~K 244 (446)
T PRK11823 180 VSQVRECAAELMRLAKQRGIAVFLVGHVTKEG----------AIAGPRVLEHMVDTVLYFEGDRH-----SRYRILRAVK 244 (446)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeeccCCC----------CcCCcchhhhhCeEEEEEEcCCC-----CceEEEEEcc
Confidence 34577888999999999999999999933321 24566679999999999875321 1256789999
Q ss_pred eeCCCcceeeeEEE
Q 009230 513 VRNKVVGTIGEAFL 526 (539)
Q Consensus 513 ~R~g~~G~~~~~~l 526 (539)
+|.|++++++.+.+
T Consensus 245 ~R~g~~~e~~~f~i 258 (446)
T PRK11823 245 NRFGATNEIGVFEM 258 (446)
T ss_pred CCCCCCCceEEEEE
Confidence 99999887654433
No 33
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.88 E-value=6.1e-21 Score=182.68 Aligned_cols=212 Identities=15% Similarity=0.223 Sum_probs=145.8
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
.++||+++||++++ +++|++++|+|+||+|||+|++|++.+.+.+ |.+++|+|+|++++++.+++.+ .|.+....
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~--~g~~~~~~ 78 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ--FGWDVRKY 78 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH--hCCCHHHH
Confidence 48999999999884 9999999999999999999999999998875 9999999999999999999754 34443222
Q ss_pred ccCCCCCCCCH-HHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHH
Q 009230 358 NYGGSAERMTV-EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436 (539)
Q Consensus 358 ~~~~~~~~l~~-~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~ 436 (539)
...+ .+.- +..............++ .....+++++...++..+..+++++|||||+..+... +. ...
T Consensus 79 ~~~g---~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~-----~~-~~~ 146 (237)
T TIGR03877 79 EEEG---KFAIVDAFTGGIGEAAEREKYV---VKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYIT-----KP-AMA 146 (237)
T ss_pred hhcC---CEEEEecccccccccccccccc---ccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcC-----Ch-HHH
Confidence 1100 0000 00000000000111111 0123467888888888888889999999999887532 11 123
Q ss_pred HHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeC
Q 009230 437 SQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515 (539)
Q Consensus 437 ~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~ 515 (539)
.+++..|+.+++++|+++++++| +..... +.+ ..+++.||.||.|...+... .-...+.|.|.|.
T Consensus 147 r~~l~~l~~~lk~~~~t~llt~~~~~~~~~----------~~~-~~~~~~~D~vI~L~~~~~~~---~~~R~l~i~K~Rg 212 (237)
T TIGR03877 147 RSIVMQLKRVLSGLGCTSIFVSQVSVGERG----------FGG-PGVEHAVDGIIRLDLDEIDG---ELKRSLIVWKMRG 212 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECccccccc----------ccc-cceEEEEeEEEEEEEEeeCC---ceEEEEEEEECCC
Confidence 36778889999999999999999 432110 111 23678999999998765422 1246799999998
Q ss_pred CCcce
Q 009230 516 KVVGT 520 (539)
Q Consensus 516 g~~G~ 520 (539)
.....
T Consensus 213 ~~~~~ 217 (237)
T TIGR03877 213 TKHSM 217 (237)
T ss_pred CCCCC
Confidence 76654
No 34
>PHA02415 DNA primase domain-containing protein
Probab=99.86 E-value=2.8e-21 Score=200.34 Aligned_cols=190 Identities=21% Similarity=0.300 Sum_probs=131.6
Q ss_pred cHHHHHHHHhcCCCHHHHHH-cCcc-------------cccC--Ccee-EEEEeEeeCCEEEEEEeecCCCcccccC---
Q 009230 49 GNELRAYFAERLISAETLRR-NRVM-------------QKRH--GHEV-VIAFPYWRNGKLVNCKYRDFNKKFWQEK--- 108 (539)
Q Consensus 49 ~~~~~~Yl~~Rgi~~~~~~~-~~~~-------------~~~~--~~~~-~i~fP~~~~G~~~~~~~R~~~~~~~~~~--- 108 (539)
...+.+||++|||++++++. +..+ +... ++++ +++||+..+|+++.++.|...+.|....
T Consensus 121 ~rrA~AYLK~RGIS~EVI~~cIk~GlIg~~~W~s~rv~agd~gygg~nAAFIVpf~rdGtvv~v~~Rg~d~afkG~vKan 200 (930)
T PHA02415 121 RERVREYLGGRGISAAAIDAAFAARSLGFNTWTSSKVAAGEVGHAGPAAAFIVREPADGRVVAVDMRYVDPALNGGVKTQ 200 (930)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHcCcccccccccccccccccccCCCceEEEecccCCceEEEeeeccccccccCCcccc
Confidence 46699999999999999997 3331 1111 1233 4569999999999999998755554422
Q ss_pred -CCCCcccccccc----CCCCcEEEEechhhHHHHHHhCCCce--EEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHh
Q 009230 109 -DTEKVFYGLDDI----EGESDIIIVEGEMDKLSMEEAGFLNC--VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL 181 (539)
Q Consensus 109 -~~~~~l~g~~~~----~~~~~v~i~EG~~Dalsl~~~g~~~~--v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l 181 (539)
.+....|+|+.. ...++|+||||+|||||++++|++++ |+| +|..+... .+ ++.+
T Consensus 201 f~Gs~~G~gW~~p~~~L~~a~eVwIvEGiIDAISL~q~Gi~avAaVAL-~GLan~~~-------------iD----~~~l 262 (930)
T PHA02415 201 TQGDKAGYGWTADARRLDKAKRVFIVESAINALSIDTCAMPGAAALAL-RGLANVDA-------------ID----FSSL 262 (930)
T ss_pred CCCCCCCCccCCCccccCCCCEEEEEechHhHHHHHHcCchhHHHHHH-cCcCCCch-------------hh----chhh
Confidence 123344444433 33578999999999999999998753 444 34443210 00 1233
Q ss_pred ccCCEEEEEecCCcc------------chHHHHHHHHHhcCC--ceEEEe---cCC-----CCCCCCCCChHHHHHhcCc
Q 009230 182 KQASRIILATDGDPP------------GQALAEELARRVGRE--RCWRVR---WPK-----KNDVDHFKDANEVLMYLGP 239 (539)
Q Consensus 182 ~~~~~ivl~~DnD~~------------G~~~~~~~~~~l~~~--~~~~~~---~p~-----~~~~~~~kD~nd~l~~~g~ 239 (539)
..++|++|+|||+| |++|+.++.+.+... .++++. |-+ ........|+||+|+.+|.
T Consensus 263 -~~KrVvlcLDNDea~~~~~~~~g~rpG~eAA~~l~e~lta~~i~~~lvd~~~w~~~~~~~~~~~~~~~d~nd~l~~~g~ 341 (930)
T PHA02415 263 -RGKQVVICLDNDEPFEDGHPRAGHRPGPEAAWALYERLASLNISAVLVDQAGWLADLADGETKQQPINDVNDYLQLRGP 341 (930)
T ss_pred -cCceEEEEecCCccccccCcccccCccHHHHHHHHHHHhhcCCceEEeehhhhhhhcccccccccccccHHHHHHHhCH
Confidence 46899999999998 999999999999432 344443 211 0111345699999999999
Q ss_pred chHHHHHHhccccCcccc
Q 009230 240 GALKEVVENAELYPIMGL 257 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~ 257 (539)
+++...++.-++|-+.+.
T Consensus 342 ~~~~~~l~~~~~wli~g~ 359 (930)
T PHA02415 342 EELARALEQLEPWLIAGL 359 (930)
T ss_pred HHHHHHHHhccccccCCC
Confidence 999999999998876655
No 35
>PRK04328 hypothetical protein; Provisional
Probab=99.85 E-value=7.9e-20 Score=175.87 Aligned_cols=214 Identities=16% Similarity=0.220 Sum_probs=144.7
Q ss_pred cccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc
Q 009230 279 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~ 356 (539)
..++||+++||++++ +++|.+++|+|+||+|||+|++|++.+.+.+ |.+++|+|+|++++++.+++.+ .|.+...
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ee~~~~i~~~~~~--~g~d~~~ 79 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVALEEHPVQVRRNMRQ--FGWDVRK 79 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEeeCCHHHHHHHHHH--cCCCHHH
Confidence 358999999999995 9999999999999999999999999998886 9999999999999998877644 3444322
Q ss_pred cccCCCCCCCCHHH-HHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHH
Q 009230 357 ANYGGSAERMTVEE-FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435 (539)
Q Consensus 357 i~~~~~~~~l~~~~-~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~ 435 (539)
....+ .+.--+ .............++ . ....+++.+...+...+.+.++++|||||+..+... +. ..
T Consensus 80 ~~~~~---~l~iid~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-----~~-~~ 147 (249)
T PRK04328 80 YEEEG---KFAIVDAFTGGIGSAAKREKYV-V--KDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT-----KP-AM 147 (249)
T ss_pred HhhcC---CEEEEecccccccccccccccc-c--cCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC-----Ch-HH
Confidence 21100 000000 000000000000111 0 123356778888888888889999999999887532 11 22
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeC
Q 009230 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515 (539)
Q Consensus 436 ~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~ 515 (539)
..+++..|..+++++|+++++++|...... .+.+ ..++..||.||.|...+... .....+.|.|.|.
T Consensus 148 ~r~~~~~l~~~lk~~g~t~llt~e~~~~~~---------~~~~-~~~~~~~D~vI~L~~~~~~~---~~~R~l~I~K~Rg 214 (249)
T PRK04328 148 ARSIVMQLKRVLSGLGCTAIFVSQVSVGER---------GFGG-PGVEHAVDGIIRLDLDEIDG---ELKRSLIVWKMRG 214 (249)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcccccc---------ccCC-CCcEEEEEEEEEEEEEecCC---cEEEEEEEEEccC
Confidence 346678888888999999999999322110 0111 23678899999998765321 1246789999998
Q ss_pred CCcce
Q 009230 516 KVVGT 520 (539)
Q Consensus 516 g~~G~ 520 (539)
...+.
T Consensus 215 ~~~~~ 219 (249)
T PRK04328 215 TKHSM 219 (249)
T ss_pred CCCCC
Confidence 76554
No 36
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.85 E-value=2.8e-20 Score=177.35 Aligned_cols=199 Identities=18% Similarity=0.232 Sum_probs=141.3
Q ss_pred cccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccc
Q 009230 281 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 281 i~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~ 358 (539)
++||+++||++++ +++|.+++|.|+||+|||+|++|++.+.+.+.|.+|+|+|+|++++++.+++.+ .|+++.+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s--~g~d~~~-- 76 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKS--FGWDLEE-- 76 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHT--TTS-HHH--
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHH--cCCcHHH--
Confidence 5899999999994 999999999999999999999999999988549999999999999999888753 2333221
Q ss_pred cCCCCCCCCHHHHHHHHHHhhccceeEeecCCC----CCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 359 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDS----LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~----~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
+.+ ...+.++...... ..+++.+...+...+...++++|||||+..+.... + ..
T Consensus 77 ---------------~~~--~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~----~-~~ 134 (226)
T PF06745_consen 77 ---------------YED--SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD----D-PE 134 (226)
T ss_dssp ---------------HHH--TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS----S-GG
T ss_pred ---------------Hhh--cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC----C-HH
Confidence 111 1123333221111 35788899999988888899999999999983221 1 12
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchh-ccceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFIN-KCDNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~-~aD~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
.+..++..|....+++++++++++| ...... .....++. .||.||.|...+... .-...+.|.|
T Consensus 135 ~~r~~l~~l~~~l~~~~~t~llt~~~~~~~~~-----------~~~~~i~~~l~D~vI~L~~~~~~~---~~~R~l~I~K 200 (226)
T PF06745_consen 135 ELRRFLRALIKFLKSRGVTTLLTSEMPSGSED-----------DGTFGIEHYLADGVIELRYEEEGG---RIRRRLRIVK 200 (226)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEEESSSSSS-----------SSSTSHHHHHSSEEEEEEEEEETT---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEccccCccc-----------ccccchhhhcccEEEEEEEEeeCC---EEEEEEEEEE
Confidence 3556788888888999999999999 432211 12334666 999999999865432 2257899999
Q ss_pred eeCCCcc
Q 009230 513 VRNKVVG 519 (539)
Q Consensus 513 ~R~g~~G 519 (539)
.|.....
T Consensus 201 ~Rg~~~~ 207 (226)
T PF06745_consen 201 MRGSRHS 207 (226)
T ss_dssp ETTS---
T ss_pred cCCCCCC
Confidence 9987543
No 37
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.85 E-value=4.7e-20 Score=175.96 Aligned_cols=206 Identities=18% Similarity=0.186 Sum_probs=145.7
Q ss_pred cccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC------CeEEEEeCCCC--HHHHHHHHHHHhh
Q 009230 281 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAG------WKFVLCSMENK--VREHARKLLEKHI 350 (539)
Q Consensus 281 i~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g------~~vl~~s~E~~--~~~~~~r~~~~~~ 350 (539)
++||++.||++++ +++|+++.|+|+||+|||+|+++++.+.+.+ + ..|+|++.|.+ ++++...... .
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~-~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~--~ 77 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLP-GELGGLEGKVVYIDTEGAFRPERLVQLAVR--F 77 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcc-cccCCCcceEEEEecCCCCCHHHHHHHHHH--h
Confidence 5899999999984 9999999999999999999999999998875 6 89999999976 4333222111 1
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHH---HcCCcEEEEccccccccCCC
Q 009230 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL---RHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 351 ~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~---~~~~~~vvID~~~~l~~~~~ 427 (539)
+. .. +.+.++..++ ...+.+++...++.+.. ..++++||||++..+.....
T Consensus 78 ~~--------------~~-------~~~~~~i~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~ 131 (226)
T cd01393 78 GL--------------DP-------EEVLDNIYVA-----RPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEF 131 (226)
T ss_pred cc--------------ch-------hhhhccEEEE-----eCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhh
Confidence 11 00 1112333443 22356666666666544 67899999999988865321
Q ss_pred CC----CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCC
Q 009230 428 VS----QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGP 502 (539)
Q Consensus 428 ~~----~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~ 502 (539)
.. ..+...+.+++..|+.+|++++|+|++++| +.......+. +. --.|+..+.+.+|+.|.|.+.+....
T Consensus 132 ~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq~~~~~~~~~~~-~~--~p~~G~~~~~~~~~ri~l~~~~~~~~-- 206 (226)
T cd01393 132 IGRGMLAERARLLSQALRKLLRLADKFNVAVVFTNQVRAKVDVMFGD-PE--TPAGGNALAHASTTRLDLRKGRGIIG-- 206 (226)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEEEeeecccccCC-Cc--cccCchhhhCcccEEEEEEecCCccC--
Confidence 11 123356788999999999999999999999 5544321111 11 12467899999999999998775321
Q ss_pred CCcEEEEEEEeeCCCccee
Q 009230 503 IDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 503 ~~~~~l~i~K~R~g~~G~~ 521 (539)
....+.+.|++..+.|+.
T Consensus 207 -~~r~~~~~k~~~~~~~~~ 224 (226)
T cd01393 207 -ERRIAKVVKSPALPEAEA 224 (226)
T ss_pred -cEEEEEEEeCCCCCCccc
Confidence 356799999998888764
No 38
>PHA02031 putative DnaG-like primase
Probab=99.85 E-value=7e-21 Score=176.69 Aligned_cols=163 Identities=14% Similarity=0.054 Sum_probs=126.9
Q ss_pred HHHHHHHHhcCCCHHHHHHcCcccccCCceeEEEEeEeeCCEEEEEEeecC---CCcccccCCCCCcccccccc-CCCCc
Q 009230 50 NELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYWRNGKLVNCKYRDF---NKKFWQEKDTEKVFYGLDDI-EGESD 125 (539)
Q Consensus 50 ~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~~~~~i~fP~~~~G~~~~~~~R~~---~~~~~~~~~~~~~l~g~~~~-~~~~~ 125 (539)
..+..||.++||+.+.+..-+. ..|+..+++|+||+.+ +|.+|.+ .+||.+.++....+||++.. ...+.
T Consensus 88 ~~L~~~L~~kG~~~~~l~~~~~-~~yDrFr~RimFPI~d-----gFgGR~l~~~~PKYLN~~SP~~~l~~~~~~~~~~~~ 161 (266)
T PHA02031 88 QSLYGLLLSKGIDPNMMEPGLP-LEYSERQGRLIFRTDA-----GWLGRATADQQPKWVGYGYPAPDYVGWPPELSMPRP 161 (266)
T ss_pred HHHHHHHHHCCCCHHHHHhcCC-cceeeeCCEEEEeecc-----ccccccCCCCCCCcCCCCCCcHHHhhchhhhccCCe
Confidence 5688999999999998876432 2356678999999986 6777776 57999955446678888754 35789
Q ss_pred EEEEechhhHHHHHH---hCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccC--CEEEEEecCCccchHH
Q 009230 126 IIIVEGEMDKLSMEE---AGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA--SRIILATDGDPPGQAL 200 (539)
Q Consensus 126 v~i~EG~~Dalsl~~---~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~--~~ivl~~DnD~~G~~~ 200 (539)
+|||||.+|++++++ +|+.++|+. .|++- . ..++..|.++ ++|++|+|.|.||++|
T Consensus 162 vIlvEGYmDVI~l~~a~~aG~~naVA~-LGTAL-------T-----------~~q~~~L~r~~~~~Vil~fDgD~AG~~A 222 (266)
T PHA02031 162 VVLTEDYLSALKVRWACNKPEVFAVAL-LGTRL-------R-----------DRLAAILLQQTCPRVLIFLDGDPAGVDG 222 (266)
T ss_pred EEEEcCcHHHHHHHHHHhcCcceEEEC-CcccC-------C-----------HHHHHHHHhcCCCCEEEEeCCCHHHHHH
Confidence 999999999999976 699999985 57753 2 1235566664 8999999999999999
Q ss_pred HHHHHHHhc--CCceEEEecCCCCCCCCCCChHHHHHhcCcchHH
Q 009230 201 AEELARRVG--RERCWRVRWPKKNDVDHFKDANEVLMYLGPGALK 243 (539)
Q Consensus 201 ~~~~~~~l~--~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~ 243 (539)
+.+..+.|. ...+.++.+| .++||+|++++.+.+.+.
T Consensus 223 a~ra~~~l~~~~~~v~vv~lP------~g~DPDd~ir~~i~eal~ 261 (266)
T PHA02031 223 SAGAMRRLRPLLIEGQVIITP------DGFDPKDLEREQIRELLI 261 (266)
T ss_pred HHHHHHHHHHcCCceEEEECC------CCCChHHHHHHHHHHHHh
Confidence 999888873 3467888988 689999999876555443
No 39
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.84 E-value=2.2e-19 Score=170.28 Aligned_cols=197 Identities=18% Similarity=0.175 Sum_probs=133.0
Q ss_pred cccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccc
Q 009230 281 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 281 i~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~ 358 (539)
+|||+++||.+++ +++|++++|+|+||+|||+|+++++.+++.+ |.+|+|++.|....+-..++...
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~e~~~~~~~~~~~~~---------- 69 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDTEGLSSERFRQIAGD---------- 69 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHhH----------
Confidence 5899999999995 9999999999999999999999999999885 99999999997654332222211
Q ss_pred cCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHH---HHHHHHHHcCCcEEEEccccccccCCCCC----CC
Q 009230 359 YGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLD---LAKAAVLRHGVRGLVIDPYNELDHQRPVS----QT 431 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~---~i~~~~~~~~~~~vvID~~~~l~~~~~~~----~~ 431 (539)
. .+.+..+.+++. ..+++++.. .+.... ..++++|||||+..+....... ..
T Consensus 70 ------~---------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~lvvIDsi~~l~~~~~~~~~~~~~ 128 (218)
T cd01394 70 ------R---------PERAASSIIVFE-----PMDFNEQGRAIQETETFA-DEKVDLVVVDSATALYRLELGDDDTTIK 128 (218)
T ss_pred ------C---------hHhhhcCEEEEe-----CCCHHHHHHHHHHHHHHH-hcCCcEEEEechHHhhhHHhcCccchHH
Confidence 0 011223333331 223344433 333322 2358999999998875321101 12
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEE
Q 009230 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 510 (539)
Q Consensus 432 ~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i 510 (539)
....+.+++..|+.+|++++|+||+++| ++...+ ...+| .|+..+++.+|.+|.|.+.+.. .....+
T Consensus 129 ~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~-~~~~p-----~~g~~~~~~~d~~i~l~~~~~~------~r~~~~ 196 (218)
T cd01394 129 NYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGS-GSVRP-----LGGHTLEHWSKVILRLEKLRVG------TRRAVL 196 (218)
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCC-Ccccc-----cCCcchhcceeEEEEEEEcCCC------eEEEEE
Confidence 2335677888899999999999999999 654432 11222 2456789999999999987621 233346
Q ss_pred EEeeCCCccee
Q 009230 511 RKVRNKVVGTI 521 (539)
Q Consensus 511 ~K~R~g~~G~~ 521 (539)
.|+|..+.+..
T Consensus 197 ~~~~~~~~~~~ 207 (218)
T cd01394 197 EKHRFRPEGSS 207 (218)
T ss_pred eeCCCCCCCce
Confidence 67777776654
No 40
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.84 E-value=1.4e-19 Score=172.33 Aligned_cols=197 Identities=17% Similarity=0.220 Sum_probs=135.3
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC-CCHHHHHHHHHHHhhCCCccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E-~~~~~~~~r~~~~~~~~~~~~ 356 (539)
.++||+++||++++ +++|.++.|+|+||+|||+|++|++.+.+.. |.+|+|+++| ++++++.+ +... +
T Consensus 4 ~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e~~~~~r~~~-~~~~----~--- 74 (225)
T PRK09361 4 RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTEGLSPERFKQ-IAGE----D--- 74 (225)
T ss_pred cccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECCCCCHHHHHH-HHhh----C---
Confidence 58999999999994 9999999999999999999999999999885 9999999999 45544322 1110 0
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH---HHHHHcCCcEEEEccccccccCC--C--CC
Q 009230 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELDHQR--P--VS 429 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~~~~--~--~~ 429 (539)
+.+ .+ ++.+++ ...+.+++...++ .+.. .++++||||++..+.... . ..
T Consensus 75 --------------~~~---~~-~~~~~~-----~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~~~~~~~~~~ 130 (225)
T PRK09361 75 --------------FEE---LL-SNIIIF-----EPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYRLELEDEEDN 130 (225)
T ss_pred --------------hHh---Hh-hCeEEE-----eCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhHHHhcCCccH
Confidence 111 11 233333 1234444433333 3332 689999999998775431 1 11
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEE
Q 009230 430 QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 508 (539)
Q Consensus 430 ~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l 508 (539)
......+.+++..|+.+|+++|++|++++| ....... . ..-.|+..+++.+|.+|.|.+.+. +...+
T Consensus 131 ~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~-----~-~~~~gg~~~~~~~d~ii~l~~~~~------~~r~~ 198 (225)
T PRK09361 131 SKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSD-----G-LRPLGGHTLEHWSKTILRLEKFRN------GKRRA 198 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCC-----c-ccCCCcchhhhhccEEEEEEEccC------CeEEE
Confidence 112345677778899999999999999999 4433211 1 112355678999999999988322 24566
Q ss_pred EEEEeeCCCccee
Q 009230 509 CVRKVRNKVVGTI 521 (539)
Q Consensus 509 ~i~K~R~g~~G~~ 521 (539)
.+.|+|..+.|..
T Consensus 199 ~i~k~~~~~~~~~ 211 (225)
T PRK09361 199 TLEKHRSRPEGES 211 (225)
T ss_pred EEEECCCCCCCCe
Confidence 7899988777654
No 41
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.84 E-value=4.2e-19 Score=169.68 Aligned_cols=198 Identities=18% Similarity=0.124 Sum_probs=141.3
Q ss_pred cccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccc
Q 009230 281 ISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 281 i~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~ 358 (539)
++||+++||+++ | +++|++++|.|+||+|||+|+++++.+.+.+ |.+|+|+++|++++++..++ ...|+++.++.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e~~~~~i~~~~--~~~g~~~~~~~ 78 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTEESRESIIRQA--AQFGMDFEKAI 78 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHH--HHhCCCHHHHh
Confidence 789999999998 4 9999999999999999999999999988875 99999999999999888773 33455544321
Q ss_pred cCCCCCCCCHHHHHHHHHHhhccceeEee--------cCCCCCCHHHHHHHHHHHHHHc--CCcEEEEccccccccCCCC
Q 009230 359 YGGSAERMTVEEFEQGKAWLSNTFSLIRC--------ENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDHQRPV 428 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~~~~~l~~~~~~i~~--------~~~~~~~~~~i~~~i~~~~~~~--~~~~vvID~~~~l~~~~~~ 428 (539)
.. ....++.. ......+++++...++.+..++ ++++||||++..+....
T Consensus 79 ~~-------------------~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~-- 137 (229)
T TIGR03881 79 EE-------------------GKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDK-- 137 (229)
T ss_pred hc-------------------CCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccC--
Confidence 10 01111100 0012457888999998887775 47799999877765321
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEE
Q 009230 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQV 508 (539)
Q Consensus 429 ~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l 508 (539)
. ....+++..|+.+++++|+++++++|...... .+ ....++..||.||.|+..+... .....+
T Consensus 138 ---~-~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~----~~------~~~~~~~l~D~vI~L~~~~~~~---~~~R~i 200 (229)
T TIGR03881 138 ---P-AMARKYSYYLKRVLNRWNFTILLTSQYAITTS----QA------FGFGIEHVADGIIRFRKVVVDG---ELRRYL 200 (229)
T ss_pred ---h-HHHHHHHHHHHHHHHhCCCEEEEEecccccCC----CC------cccceEEEEeEEEEEEEeccCC---cEEEEE
Confidence 1 12356778899999999999999999322211 00 1124678999999999765422 124678
Q ss_pred EEEEeeCCCcc
Q 009230 509 CVRKVRNKVVG 519 (539)
Q Consensus 509 ~i~K~R~g~~G 519 (539)
.|.|.|.....
T Consensus 201 ~i~K~R~~~~~ 211 (229)
T TIGR03881 201 IVEKMRQTNHD 211 (229)
T ss_pred EEEeccCCCCC
Confidence 99999986443
No 42
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.82 E-value=1.6e-18 Score=171.81 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=161.9
Q ss_pred cchHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHH
Q 009230 239 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDA 316 (539)
Q Consensus 239 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~ 316 (539)
.+.+.+++..|......+..+..++++. ......++||++.||++++ +++|.+|.|+|+||+|||+|++|
T Consensus 74 ~~~~~ki~~~a~~~~~~~~~ta~~~~~~--------~~~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lq 145 (344)
T PLN03187 74 EAKVDKICEAAEKLLNQGFITGSDALLK--------RKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHT 145 (344)
T ss_pred HHHHHHHHHHHHHhhcccCCcHHHHHhh--------hccCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHH
Confidence 3556666766665444455555555332 1345679999999999996 99999999999999999999999
Q ss_pred HHHHHHHh-----cCCeEEEEeCCC--CHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecC
Q 009230 317 LICNINEH-----AGWKFVLCSMEN--KVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 389 (539)
Q Consensus 317 la~~~a~~-----~g~~vl~~s~E~--~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~ 389 (539)
++.+.+.. .+.+|+|+++|. +++++.+.... .|.+. ++ .+ +++++.
T Consensus 146 lav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~--~g~d~--------------~~------~l-~~I~~~---- 198 (344)
T PLN03187 146 LCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER--FGMDA--------------DA------VL-DNIIYA---- 198 (344)
T ss_pred HHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH--cCCCh--------------hh------hc-CeEEEe----
Confidence 99887642 136999999998 68877665432 23221 11 12 223333
Q ss_pred CCCCCHHHHHHHH---HHHHHHcCCcEEEEccccccccCC--CCC--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 390 DSLPSIKWVLDLA---KAAVLRHGVRGLVIDPYNELDHQR--PVS--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 390 ~~~~~~~~i~~~i---~~~~~~~~~~~vvID~~~~l~~~~--~~~--~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
...+.+++...+ .....+.++++|||||+..+.... +.+ ..+.+.+.+++..|+.+|+++|++|+++.| ..
T Consensus 199 -~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvvTNqv~~ 277 (344)
T PLN03187 199 -RAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQVIA 277 (344)
T ss_pred -cCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEecEEE
Confidence 334555544433 334556789999999999886542 111 123345788999999999999999999999 44
Q ss_pred CCCCC-CCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 462 QLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 462 ~~~~~-~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
+.... ....| ..-.|+..+...+++.+.|.+.+. ..+.+.+.|+++.+.+..
T Consensus 278 ~~~~~~~~~~~--~~pagG~~~~h~~~~Rl~l~k~~~------~~R~~~v~ksp~lp~~~~ 330 (344)
T PLN03187 278 DPGGGMFISDP--KKPAGGHVLAHAATIRLMLRKGKG------EQRVCKVFDAPNLPEAEA 330 (344)
T ss_pred cCCcccccCCC--CCCCCchhhheeeeEEEEEEcCCC------CeEEEEEEECCCCCCceE
Confidence 33211 00111 122456788899999999987542 246789999999888764
No 43
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.82 E-value=1.6e-18 Score=170.93 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=158.5
Q ss_pred cchHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHH
Q 009230 239 PGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDA 316 (539)
Q Consensus 239 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~ 316 (539)
.+.+.++++.|......+..+..++.+. ......++||.+.||++++ +++|.++.|+|+||+|||+|++|
T Consensus 44 ~~~~~~i~~~~~~~~~~~~~ta~~~~~~--------~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lq 115 (313)
T TIGR02238 44 EAKVDKIKEAASKIINPGFITAFEISQK--------RKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHT 115 (313)
T ss_pred HHHHHHHHHHHHhhhcccCccHHHHHHh--------hccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHH
Confidence 3556667766655433344444444211 2445679999999999996 99999999999999999999999
Q ss_pred HHHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecC
Q 009230 317 LICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 389 (539)
Q Consensus 317 la~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~ 389 (539)
++.+.... .+.+|+|+++|.+ ++++.++... .+++. ++ +-++.++.
T Consensus 116 la~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~--~g~d~--------------~~-------~l~~i~~~---- 168 (313)
T TIGR02238 116 LCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER--FGVDP--------------DA-------VLDNILYA---- 168 (313)
T ss_pred HHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH--cCCCh--------------HH-------hcCcEEEe----
Confidence 99887642 2579999999985 7877665432 23221 11 11223333
Q ss_pred CCCCCHHHHHHHHH---HHHHHcCCcEEEEccccccccCCCC--C-CC-HHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 390 DSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELDHQRPV--S-QT-ETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 390 ~~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~~~~~~--~-~~-~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
...+.++..+.+. ....+.++++|||||+..+....-. + .. +.+.+.+++..|+.+|+++|++|+++.| ..
T Consensus 169 -~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvitNqv~~ 247 (313)
T TIGR02238 169 -RAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFVTNQVQA 247 (313)
T ss_pred -cCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEEECceEe
Confidence 2334444443333 3344568999999999988653211 1 11 2234778999999999999999999999 44
Q ss_pred CCCCC--CCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 462 QLHNW--VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 462 ~~~~~--~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
+.... ....| ..-.|+..++..+++.|.|.+.+. +.+.+.|.|.++-+.+..
T Consensus 248 ~~~~~~~~~~~~--~~p~gG~~~~h~~~~Rl~l~k~~~------~~R~~~~~~sp~~p~~~~ 301 (313)
T TIGR02238 248 DPGATMTFIADP--KKPIGGHVLAHASTTRILLRKGRG------EERVAKLYDSPDMPEAEA 301 (313)
T ss_pred cCCcccccCCCC--ccCcchhhhhhheeEEEEEEecCC------CeEEEEEeeCCCCCCeEE
Confidence 43210 00001 011356788999999999997643 246788899988887764
No 44
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=99.81 E-value=2e-18 Score=169.05 Aligned_cols=219 Identities=16% Similarity=0.093 Sum_probs=155.8
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
.....+|||++.||.+++ +++|.++.|+|+||+|||+|+++++.+++.. |.+|+|+++|.+...- + +...|+
T Consensus 31 ~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~~~--~--a~~lGv 105 (325)
T cd00983 31 QDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALDPV--Y--AKKLGV 105 (325)
T ss_pred cCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHHHH--H--HHHcCC
Confidence 345679999999999974 9999999999999999999999999999885 9999999999987742 1 222233
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccC-C-CC-C
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ-R-PV-S 429 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~-~-~~-~ 429 (539)
+.. +++++ ...+.++....++.+++...+++|||||+..+... . .+ .
T Consensus 106 d~~-------------------------~l~v~-----~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~ 155 (325)
T cd00983 106 DLD-------------------------NLLIS-----QPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEM 155 (325)
T ss_pred CHH-------------------------Hheec-----CCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccc
Confidence 221 11222 22346777777888888888999999999988742 1 11 1
Q ss_pred -CC----HHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCC
Q 009230 430 -QT----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 501 (539)
Q Consensus 430 -~~----~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~ 501 (539)
.. ....+.+.++.|..+++++||++|++.|.+..-.... ....--.|+..+.+.+...+-+.+.+. .+..
T Consensus 156 ~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~~~--g~~e~~~GG~~L~~~ss~rl~lrk~~~~k~~~~~ 233 (325)
T cd00983 156 GDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGVMF--GNPETTTGGNALKFYSSVRLDIRRIETIKDGDEV 233 (325)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccccccc--CCCccCCCchHHhhhcceEEEEEeecccccCCcc
Confidence 11 1123567888899999999999999999443321100 111223456679999999999988652 1111
Q ss_pred CCCcEEEEEEEeeCCCcceeeeEEEEEeCC
Q 009230 502 PIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531 (539)
Q Consensus 502 ~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~ 531 (539)
..+.+.+.+.|||-.+.+..-.+.+.|+.-
T Consensus 234 ~G~~~~~~v~Knk~~~p~~~~~~~i~~~~G 263 (325)
T cd00983 234 IGNRTKVKVVKNKVAPPFKTAEFDILFGEG 263 (325)
T ss_pred cccEEEEEEEecccCCCCCceEEEEEcCcc
Confidence 234578999999999888765566777643
No 45
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=99.81 E-value=9.9e-19 Score=171.19 Aligned_cols=218 Identities=17% Similarity=0.106 Sum_probs=154.1
Q ss_pred CccccccCchhhhhhh--c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 277 DEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~--~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
....+|||++.||.++ | |++|.++.|+|+||+|||+|+++++.+++.+ |.+|+||++|.+.... .+...|++
T Consensus 32 ~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~~~~~----~a~~lGvd 106 (321)
T TIGR02012 32 DVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV----YARKLGVD 106 (321)
T ss_pred cCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccchhHHH----HHHHcCCC
Confidence 4568999999999998 5 9999999999999999999999999999885 9999999999887753 12223443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC--CC--C
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--PV--S 429 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~--~~--~ 429 (539)
.. ..++. ...+.++....+..+++..++++|||||+..+.... .+ +
T Consensus 107 ~~-------------------------~l~v~-----~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g 156 (321)
T TIGR02012 107 ID-------------------------NLLVS-----QPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMG 156 (321)
T ss_pred HH-------------------------HeEEe-----cCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhccccc
Confidence 21 11222 223467777777777878889999999999886421 00 0
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCCC
Q 009230 430 Q----TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 502 (539)
Q Consensus 430 ~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~~ 502 (539)
. .....+.++++.|..+++++||++|++.|.+...+.....| ..-.|..++.+.+...+-+.|... .+...
T Consensus 157 ~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g~~~~~~--e~~~GG~aL~~~ss~r~~lrr~~~iK~~~~~~ 234 (321)
T TIGR02012 157 DSHVGLQARLMSQALRKLTGALSKSNTTAIFINQIREKIGVMFGNP--ETTTGGRALKFYASVRLDIRRIGQVKQGEEVV 234 (321)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccCcccCCC--ccCcCccHHHHHHhHhHhhhhhhccccCCcee
Confidence 1 11123457888899999999999999999544321100111 123455668889998888877542 11122
Q ss_pred CCcEEEEEEEeeCCCcceeeeEEEEEeCC
Q 009230 503 IDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531 (539)
Q Consensus 503 ~~~~~l~i~K~R~g~~G~~~~~~l~fd~~ 531 (539)
.+.+.+.+.|||-.+.+..-.+.+.|+.-
T Consensus 235 g~~~~~~v~Knk~~~p~~~~~~~i~~~~G 263 (321)
T TIGR02012 235 GNRTKVKVVKNKVAPPFKEAEFDILYGEG 263 (321)
T ss_pred ccEEEEEEEECCCCCCCCceEEEEEcCCc
Confidence 35689999999999888754556666543
No 46
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.80 E-value=2.4e-18 Score=181.15 Aligned_cols=203 Identities=15% Similarity=0.203 Sum_probs=148.8
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....++||+++||++++ +++|.+++|.|+||+|||+|++|++.+.|.+ |.+|+|+|+|++++++..|+.+ .|+++
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs~~~i~~~~~~--lg~~~ 317 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-KERAILFAYEESRAQLLRNAYS--WGIDF 317 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCCHHHHHHHHHH--cCCCh
Confidence 45579999999999996 9999999999999999999999999999986 9999999999999999999754 34443
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
.... ....+.++ ........+++....+...+.+.++++|||||+..+.... .. .
T Consensus 318 ~~~~-------------------~~g~l~~~-~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~----~~-~ 372 (484)
T TIGR02655 318 EEME-------------------QQGLLKII-CAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALARGV----SN-N 372 (484)
T ss_pred HHHh-------------------hCCcEEEE-EcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhc----CH-H
Confidence 2211 01222333 2123345678888888888888999999999999875421 11 2
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEee
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R 514 (539)
...+++..|..++++.|++++++......... ... ....+++.||+||.|...+.... -...+.|.|.|
T Consensus 373 ~~r~~~~~l~~~lk~~~it~~~t~~~~~~~~~--~~~------~~~~~s~l~D~ii~l~~~e~~g~---~~r~i~V~K~R 441 (484)
T TIGR02655 373 AFRQFVIGVTGYAKQEEITGFFTNTSDQFMGS--HSI------TDSHISTITDTILMLQYVEIRGE---MSRAINVFKMR 441 (484)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEeecccccccC--Ccc------CCCCeeEeeeEEEEEEEEecCCE---EEEEEEEEEcc
Confidence 33567778888999999999999773322110 000 01347889999999987664321 14558899999
Q ss_pred CCCc
Q 009230 515 NKVV 518 (539)
Q Consensus 515 ~g~~ 518 (539)
.+..
T Consensus 442 ~~~~ 445 (484)
T TIGR02655 442 GSWH 445 (484)
T ss_pred CCCC
Confidence 8754
No 47
>PRK09354 recA recombinase A; Provisional
Probab=99.80 E-value=4.3e-18 Score=167.89 Aligned_cols=221 Identities=18% Similarity=0.113 Sum_probs=156.0
Q ss_pred CccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 277 DEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
....+|||++.||.+++ +++|.++.|+|++|+|||+|+++++.+++.. |.+++||++|.+...- . +...|++
T Consensus 37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~~~---~-a~~lGvd 111 (349)
T PRK09354 37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALDPV---Y-AKKLGVD 111 (349)
T ss_pred CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchHHH---H-HHHcCCC
Confidence 45679999999999985 9999999999999999999999999999885 9999999999988752 2 2223443
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC---CC-C
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR---PV-S 429 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~---~~-~ 429 (539)
..+ +++. ...+.++....++.+++..++++|||||+..+.... +. +
T Consensus 112 ld~-------------------------lli~-----qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~g 161 (349)
T PRK09354 112 IDN-------------------------LLVS-----QPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMG 161 (349)
T ss_pred HHH-------------------------eEEe-----cCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcc
Confidence 211 1222 223467777778888888889999999999887411 10 1
Q ss_pred CC----HHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCCC
Q 009230 430 QT----ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 502 (539)
Q Consensus 430 ~~----~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~~ 502 (539)
+. ....+.+.++.|..+++++||++|++.|.+..-+.....| ..-.|..++.+.+...+-+.|... .+...
T Consensus 162 d~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig~~~g~p--e~~~GG~aL~~~ss~rl~lrr~~~iK~~~~~~ 239 (349)
T PRK09354 162 DSHVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIGVMFGNP--ETTTGGNALKFYASVRLDIRRIGTIKDGDEVI 239 (349)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccccccCCC--CcCCCchhhHhhheeeeEEecccccccCCcee
Confidence 11 1124456788899999999999999999544211000111 122456678899999999988642 11112
Q ss_pred CCcEEEEEEEeeCCCcceeeeEEEEEeCCCce
Q 009230 503 IDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGE 534 (539)
Q Consensus 503 ~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~r 534 (539)
.+.+.+.+.|||-.+.+..-.+.+.|+.--.+
T Consensus 240 G~~~r~~vvKnk~~~p~~~a~~~i~~~~Gi~~ 271 (349)
T PRK09354 240 GNRTKVKVVKNKVAPPFKQAEFDIMYGEGISR 271 (349)
T ss_pred cceEEEEEEecccCCCCCceEEEEEcCCccch
Confidence 34678999999999888765566777653333
No 48
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.80 E-value=2.3e-18 Score=183.40 Aligned_cols=206 Identities=12% Similarity=0.095 Sum_probs=147.0
Q ss_pred CCccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
....++|||+++||+++ | +++|++++|+|+||+|||+|++|++.+.+.+.|.+|+|||+|++++++.+++.+. |++
T Consensus 8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~--g~d 85 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF--GWD 85 (509)
T ss_pred CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc--CCC
Confidence 35568999999999999 4 9999999999999999999999999999886589999999999999999998763 555
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeec-------CCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE-------NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~-------~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
+.++... ..+.++... ..+..+++.+...+..++.+.+++.|||||+..+....
T Consensus 86 ~~~~~~~-------------------g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~ 146 (509)
T PRK09302 86 LQKLIDE-------------------GKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGF 146 (509)
T ss_pred HHHHhhC-------------------CeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhc
Confidence 4332110 111111100 01233567788888888888999999999998875421
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcE
Q 009230 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 506 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~ 506 (539)
.+. ..+...+..|...+++.++++++++|...... ++...+..++.||.|+.|....... ....
T Consensus 147 ---d~~-~~~r~~l~~L~~~Lk~~g~TvLlt~~~~~~~~---------~~~~~~~~~~laDgVI~L~~~~~~~---~~~R 210 (509)
T PRK09302 147 ---SNE-AVVRRELRRLFAWLKQKGVTAVITGERGDEYG---------PLTRYGVEEFVSDCVIILRNRLEGE---KRTR 210 (509)
T ss_pred ---cCH-HHHHHHHHHHHHHHHhCCCEEEEEECCccCcC---------CccccCceEEEeeEEEEEeEEccCC---eEEE
Confidence 122 22345556666677889999999999322111 1222234567999999998655322 2257
Q ss_pred EEEEEEeeCCCc
Q 009230 507 QVCVRKVRNKVV 518 (539)
Q Consensus 507 ~l~i~K~R~g~~ 518 (539)
.+.|.|.|....
T Consensus 211 ~l~I~K~Rg~~~ 222 (509)
T PRK09302 211 TLRILKYRGTTH 222 (509)
T ss_pred EEEEEECCCCCc
Confidence 899999997543
No 49
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.80 E-value=9.4e-19 Score=162.73 Aligned_cols=167 Identities=23% Similarity=0.270 Sum_probs=99.4
Q ss_pred ccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh---------cCCeEEEEeCCCCHHHHHHHHH
Q 009230 278 EFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH---------AGWKFVLCSMENKVREHARKLL 346 (539)
Q Consensus 278 ~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~---------~g~~vl~~s~E~~~~~~~~r~~ 346 (539)
...++++++.+|.+++ +++|++++|+|+||+|||+|+++++.+++.. .+.+|+|+++|++..++..|+.
T Consensus 11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~ 90 (193)
T PF13481_consen 11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR 90 (193)
T ss_dssp --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence 3468899999999997 7899999999999999999999999999962 2679999999999999999987
Q ss_pred HHhhCCCccccccCCCCCCCCHHHHHHHHHHhh-ccceeEeecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccccccc
Q 009230 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLS-NTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDH 424 (539)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~-~~~~~i~~~~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~~~~l~~ 424 (539)
....+ ++..+...+..... ....++. .......++...+.+.+.+.+ +++++||||++..+..
T Consensus 91 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~ 155 (193)
T PF13481_consen 91 ALLQD--------------YDDDANLFFVDLSNWGCIRLFE-PDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHD 155 (193)
T ss_dssp HHHTT--------------S-HHHHHHHHHH--E-EE---T-TS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--
T ss_pred HHhcc--------------cCCccceEEeeccccccceeee-cccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhc
Confidence 65422 22222222211111 1111111 112222245566666666666 7899999999998886
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCC
Q 009230 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462 (539)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~ 462 (539)
. ..+....+.+++..|+++|+++|++|++++|.++
T Consensus 156 ~---~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K 190 (193)
T PF13481_consen 156 G---DENSNSAVAQLMQELKRLAKEYGVAVILVHHTNK 190 (193)
T ss_dssp S----TT-HHHHHHHHHHHHHHHHHH--EEEEEEEE--
T ss_pred C---CCCCHHHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 5 2344444589999999999999999999999444
No 50
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.80 E-value=7.6e-18 Score=167.39 Aligned_cols=210 Identities=13% Similarity=0.126 Sum_probs=143.1
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCC--CHHHHHHHHH
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMEN--KVREHARKLL 346 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~--~~~~~~~r~~ 346 (539)
.....++||++.||++++ +++|+++.|+|+||+|||+|+++++.+++.. .+.+|+|+++|. +++++.+..-
T Consensus 100 ~~~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~ 179 (342)
T PLN03186 100 QEIIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAE 179 (342)
T ss_pred cCcceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHH
Confidence 456789999999999875 9999999999999999999999999887631 134899999998 5666543321
Q ss_pred HHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH---HHHHHcCCcEEEEccccccc
Q 009230 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~ 423 (539)
. .+++ .++ .+ +..++. ...+.+.+...+. .+....++++|||||+..+.
T Consensus 180 ~--~~~~--------------~~~------~l-~~i~~~-----~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alf 231 (342)
T PLN03186 180 R--FGLN--------------GAD------VL-ENVAYA-----RAYNTDHQSELLLEAASMMAETRFALMIVDSATALY 231 (342)
T ss_pred H--cCCC--------------hhh------hc-cceEEE-----ecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHH
Confidence 1 1221 111 11 223333 2234555444333 33456789999999999886
Q ss_pred cCC--CCCC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCC-CCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 424 HQR--PVSQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW-VGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 424 ~~~--~~~~--~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~-~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
... +.+. .+...+.+++..|+.+|+++||+|+++.| ....++. .-..|.+. -.|+..++..+++.|.|.+.+.
T Consensus 232 r~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTNqv~~~~~~~~~~~~~~~~-P~gG~~~~h~~~tRl~L~k~~~ 310 (342)
T PLN03186 232 RTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAFFAGPQLK-PIGGNIMAHASTTRLALRKGRG 310 (342)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCEEEccCCccccCCCccc-cchhHHHHhhccEEEEEEecCC
Confidence 532 1111 12234678999999999999999999999 3333221 00011111 1255689999999999997532
Q ss_pred CCCCCCCcEEEEEEEeeCCCcce
Q 009230 498 PEAGPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 498 ~~~~~~~~~~l~i~K~R~g~~G~ 520 (539)
..+.+.+.|+++.+.++
T Consensus 311 ------~~R~~~v~ksp~~p~~e 327 (342)
T PLN03186 311 ------ENRICKVISSPCLPEAE 327 (342)
T ss_pred ------CeEEEEEEECCCCCCeE
Confidence 25678999999999887
No 51
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.79 E-value=8.9e-18 Score=166.26 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=142.0
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh--cC---CeEEEEeCCC--CHHHHHHHHH
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH--AG---WKFVLCSMEN--KVREHARKLL 346 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~--~g---~~vl~~s~E~--~~~~~~~r~~ 346 (539)
.....++||++.||.+++ +++|+++.|+|+||+|||+|+++++.+++.. .| .+|+|++.|. +++++....
T Consensus 73 ~~~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia- 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA- 151 (316)
T ss_pred cccceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH-
Confidence 566789999999999875 9999999999999999999999999876542 12 5899999998 466543332
Q ss_pred HHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH---HHHHHcCCcEEEEccccccc
Q 009230 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~ 423 (539)
...+. +.+. +.+...+. ...+.+++...+. .+....++++|||||+..+.
T Consensus 152 -~~~~~--------------~~~~-------~l~~i~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~ 204 (316)
T TIGR02239 152 -ERYGL--------------NPED-------VLDNVAYA-----RAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALY 204 (316)
T ss_pred -HHcCC--------------ChHH-------hhccEEEE-----ecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHh
Confidence 11222 1111 11223333 2233444443333 33445689999999999985
Q ss_pred cCCCCC--C--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCC------CCCCCCcccccccccchhccceEEEE
Q 009230 424 HQRPVS--Q--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNW------VGEPPNLYDISGSAHFINKCDNGIVI 492 (539)
Q Consensus 424 ~~~~~~--~--~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~------~~~~~~~~~l~gs~~i~~~aD~vl~l 492 (539)
...-.+ . .+...+.+++..|+.+|+++|++|+++.| ..+.+.. ....| .|...++..+++.|.|
T Consensus 205 r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNqv~~~~~~~~~~~~g~~~~p-----~gG~~~~h~~~~ri~l 279 (316)
T TIGR02239 205 RTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAGDPKKP-----IGGNIMAHASTTRLSL 279 (316)
T ss_pred hhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceEEecCCccccccCCCCcC-----CchHHHHhhccEEEEE
Confidence 432111 1 12234678999999999999999999999 4333221 01122 3567889999999999
Q ss_pred EeCCCCCCCCCCcEEEEEEEeeCCCcce
Q 009230 493 HRNRDPEAGPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 493 ~r~~~~~~~~~~~~~l~i~K~R~g~~G~ 520 (539)
.+.+. +.+.+.+.|+|+.+.++
T Consensus 280 ~k~~~------~~R~~~v~ksp~~p~~~ 301 (316)
T TIGR02239 280 RKGRG------EQRICKIYDSPCLPESE 301 (316)
T ss_pred EecCC------CeEEEEEEECCCCCCeE
Confidence 98643 24678999999999887
No 52
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.79 E-value=6.8e-18 Score=160.63 Aligned_cols=197 Identities=15% Similarity=0.191 Sum_probs=130.6
Q ss_pred Cchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCC
Q 009230 284 GWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG 361 (539)
Q Consensus 284 g~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~ 361 (539)
|+++||++++ +++|++++|+|+||+|||+|++|++.+.+.+ |.+|+|+++|++++++.+++.+. +.+..
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~--~~~~~------ 71 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK--GWDLE------ 71 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc--CCChH------
Confidence 6889999984 9999999999999999999999999998886 99999999999999999987543 22211
Q ss_pred CCCCCCHHHHHHHHHHhhccceeEeecCC-CCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHH
Q 009230 362 SAERMTVEEFEQGKAWLSNTFSLIRCEND-SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440 (539)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~~~~~~i~~~~~-~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~ 440 (539)
+ .+...+.++...+. -...++.+...++.++.+.++++|||||+..+.... .+.......+.
T Consensus 72 -----------~---~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~---~~~~~~r~~l~ 134 (224)
T TIGR03880 72 -----------D---YIDKSLYIVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETLF---DDDAERRTELF 134 (224)
T ss_pred -----------H---HHhCCeEEEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhc---CCHHHHHHHHH
Confidence 1 11122233321100 012356677777888888999999999887762211 11222222333
Q ss_pred HHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCc
Q 009230 441 TMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518 (539)
Q Consensus 441 ~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~ 518 (539)
.-++.+ ++.|+++++++| +. .. +... ..+.+++.||.|+.|...+..... .....+.|.|.|....
T Consensus 135 ~l~~~l-k~~~~tvll~s~~~~-~~------~~~~---~~~~~~~l~D~vI~L~~~~~~~~~-~~~r~l~v~K~Rg~~~ 201 (224)
T TIGR03880 135 RFYSSL-RETGVTTILTSEADK-TN------VFAS---KYGLIEYLADGVIILKYVRNSDLR-DVRLAVEVVKMRRSKH 201 (224)
T ss_pred HHHHHH-HhCCCEEEEEEcccC-CC------CCcc---CCCceEEEEeEEEEEeeeecccCc-ceEEEEEEEEccCCCC
Confidence 333333 578999999999 43 21 1111 123478999999999654432111 1234688999998744
No 53
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.79 E-value=6.4e-18 Score=162.25 Aligned_cols=208 Identities=14% Similarity=0.152 Sum_probs=137.0
Q ss_pred cccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEeCCCC--HHHHHHHHHHHhhC
Q 009230 281 ISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMENK--VREHARKLLEKHIK 351 (539)
Q Consensus 281 i~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s~E~~--~~~~~~r~~~~~~~ 351 (539)
+|||++.||++++ +++|+++.|.|+||+|||+|+++++.+.+... +.+|+|+++|.+ ++++.+.+.. .+
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~--~~ 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER--FG 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH--hc
Confidence 5899999999996 99999999999999999999999998866542 379999999985 3333222211 11
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEccccccccCC-CCC
Q 009230 352 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQR-PVS 429 (539)
Q Consensus 352 ~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~~~~l~~~~-~~~ 429 (539)
. ..+ .+.++.+++.+ .+...+..++..+.....+. ++++|||||+..+.... ...
T Consensus 79 ~--------------~~~-------~~~~~i~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~ 135 (235)
T cd01123 79 L--------------DPE-------EVLDNIYVARA--YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR 135 (235)
T ss_pred c--------------ChH-------hHhcCEEEEec--CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC
Confidence 1 111 12233444422 11112333445555556667 89999999999875321 111
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCc
Q 009230 430 ---QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDR 505 (539)
Q Consensus 430 ---~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~ 505 (539)
.++...+.+++..|+.+|++++++|++++| ...............--.+...+.+.+++.+.+.+... ..
T Consensus 136 ~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~~~~~~~~~~~~~~~~~~p~lG~~w~~~v~~Rl~l~~~~~------~~ 209 (235)
T cd01123 136 GELAERQQHLAKLLRTLKRLADEFNVAVVITNQVTARPDGAAMFGGDPKKPAGGNIWAHASTTRLYLRKGRG------EE 209 (235)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeccEeecCCcccccCCCCeeccCccHhhCCceEEEEEEECCC------Cc
Confidence 234456788999999999999999999999 54433210000000011234578888899999987652 24
Q ss_pred EEEEEEEeeCCCcc
Q 009230 506 VQVCVRKVRNKVVG 519 (539)
Q Consensus 506 ~~l~i~K~R~g~~G 519 (539)
..+.+.|++..+.+
T Consensus 210 r~~~i~k~~~~~~~ 223 (235)
T cd01123 210 RIAKIVDSPHLPEG 223 (235)
T ss_pred eEEEEeeCCCCCCc
Confidence 67999998877643
No 54
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.78 E-value=2e-17 Score=155.73 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=129.6
Q ss_pred hhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC-CHHHHHHHHHHHhhCCCccccccCCCCC
Q 009230 288 LNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKHIKKPFFEANYGGSAE 364 (539)
Q Consensus 288 LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~-~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 364 (539)
||++++ +++|.++.|+|+||+|||+|++|++.+.+.+ |.+|+|+++|. +++++.+.....
T Consensus 1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~~~~~rl~~~~~~~---------------- 63 (209)
T TIGR02237 1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEGLSPERFKQIAEDR---------------- 63 (209)
T ss_pred ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCCHHHHHHHHHhC----------------
Confidence 688885 9999999999999999999999999999885 99999999995 776655433210
Q ss_pred CCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCC--CHHHHHHHHHHH
Q 009230 365 RMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ--TETEYVSQMLTM 442 (539)
Q Consensus 365 ~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~--~~~~~~~~~~~~ 442 (539)
.+.+.++++++.+ .+......+...+..++...++++|||||+..+........ .....+.+++..
T Consensus 64 ----------~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~ 131 (209)
T TIGR02237 64 ----------PERALSNFIVFEV--FDFDEQGVAIQKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTL 131 (209)
T ss_pred ----------hHHHhcCEEEEEC--CCHHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHH
Confidence 0112233444421 11112223345555555666899999999998754221111 123356677888
Q ss_pred HHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 443 VKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 443 Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
|+++|+++|+++++++| .....+. ... -.|+..+++.+|.++.|.+.+ +...+.+.|++..+.|..
T Consensus 132 L~~~~~~~~v~vl~t~~~~~~~~~~-~~~-----~~gg~~~~~~~d~vi~l~~~~-------~~r~~~i~k~~~~~~~~~ 198 (209)
T TIGR02237 132 LLSLARKKNLAVVITNQVYTDVNNG-TLR-----PLGGHLLEHWSKVILRLEKFR-------GRRLATLEKHRSRPEGES 198 (209)
T ss_pred HHHHHHHcCCEEEEEcccEEecCCC-CCc-----CCCcchhheeeeEEEEEEecC-------CEEEEEEEECCCCCCCCe
Confidence 99999999999999999 4433211 111 124556899999999998762 135566788777766553
No 55
>PTZ00035 Rad51 protein; Provisional
Probab=99.78 E-value=2.8e-17 Score=163.97 Aligned_cols=238 Identities=13% Similarity=0.171 Sum_probs=156.8
Q ss_pred chHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHH
Q 009230 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 317 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~l 317 (539)
+.+.+++..|......+..+..++++. ......++||++.||++++ +++|+++.|.|+||+|||+|++++
T Consensus 67 ~~~~~i~~~~~~~~~~~~~ta~~~~~~--------~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l 138 (337)
T PTZ00035 67 AKVEKIKEAASKLVPMGFISATEYLEA--------RKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTL 138 (337)
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHh--------hccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHH
Confidence 556667777665444455555555432 1345679999999999996 999999999999999999999999
Q ss_pred HHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCC
Q 009230 318 ICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390 (539)
Q Consensus 318 a~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~ 390 (539)
+...... .+.+|+|+++|.+ ++++.... ...+. ..+. .+ +...+.
T Consensus 139 ~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia--~~~g~--------------~~~~------~l-~nI~~~----- 190 (337)
T PTZ00035 139 CVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA--ERFGL--------------DPED------VL-DNIAYA----- 190 (337)
T ss_pred HHHhccccccCCCCceEEEEEccCCCCHHHHHHHH--HHhCC--------------ChHh------Hh-hceEEE-----
Confidence 9876521 3679999999975 66543332 11121 1111 12 223333
Q ss_pred CCCCHHHHHHHHH---HHHHHcCCcEEEEccccccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCC
Q 009230 391 SLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 462 (539)
Q Consensus 391 ~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~~~~~~--~~--~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~ 462 (539)
...+.++....+. ....+.++++|||||+..+....-. +. .+.+.+.+++..|+.+|+++||+|+++.| ..+
T Consensus 191 ~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvtNqv~~~ 270 (337)
T PTZ00035 191 RAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITNQVMAD 270 (337)
T ss_pred ccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEecceEEe
Confidence 2334444444333 3334568999999999997653211 11 12345788999999999999999999999 444
Q ss_pred CCCC--CCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 463 LHNW--VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 463 ~~~~--~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
.... ....+ .--.|...+...+++.|.|.+.+. +.+.+.|.|+++.+.+..
T Consensus 271 ~~~~~~~~~~~--~~p~gG~~~~h~~~~Rl~l~k~~~------~~R~~~i~ksp~~p~~~~ 323 (337)
T PTZ00035 271 VDGASMFVADP--KKPIGGHIIAHASTTRLSLRKGRG------EQRICKIYDSPNLPESEA 323 (337)
T ss_pred cCCccccCCCC--ccCCchHHHHhheeEEEEEEecCC------CeeEEEEEECCCCCCeeE
Confidence 3211 00001 112356778889999999997643 246788899999988863
No 56
>PRK08624 hypothetical protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=167.38 Aligned_cols=125 Identities=22% Similarity=0.234 Sum_probs=97.2
Q ss_pred hcCCCHHHHHHcCcccccCCceeEEEEeEe-eCCEEEEEEeecCC------Cccccc----C----CCCCcccccccc--
Q 009230 58 ERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFN------KKFWQE----K----DTEKVFYGLDDI-- 120 (539)
Q Consensus 58 ~Rgi~~~~~~~~~~~~~~~~~~~~i~fP~~-~~G~~~~~~~R~~~------~~~~~~----~----~~~~~l~g~~~~-- 120 (539)
+|||+++|+++|++++.++..+++|+||+. ..|++|+|.+|.++ ++|.+. + .+...|||++..
T Consensus 160 ~RGIs~etik~F~lGy~~D~Fr~RImFPI~d~~GrvIGFgGR~l~~~~~~~~KY~p~y~Nst~~~F~Kg~~LYGl~~Ak~ 239 (373)
T PRK08624 160 DEGISEKTQKYWEIKFYLDVISQRIIIPHRDESGELIGIRGRLLDKELVDKNKYFPIYVNDTGYNHPKGKILYGLWQNKK 239 (373)
T ss_pred HcCCCHHHHHHhCCCccccccCCeeEEEEECCCCCEEEEeCeEcCCCccccccccccCCCCcccccccchhhcCHHHHHH
Confidence 799999999999998777777789999998 88999999999983 235432 1 256789999764
Q ss_pred --CCCCcEEEEechhhHH---HHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccC--CEEEEEecC
Q 009230 121 --EGESDIIIVEGEMDKL---SMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA--SRIILATDG 193 (539)
Q Consensus 121 --~~~~~v~i~EG~~Dal---sl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~--~~ivl~~Dn 193 (539)
.+.+.++||||++|++ +++|+| .++|++ +|++- . ..++..|.+. ++|+||+|+
T Consensus 240 ~irk~~~vIivEGymDVI~~~a~~~~G-~naVA~-lGTal-------T-----------~~q~~lL~r~~~~~Vil~~Dg 299 (373)
T PRK08624 240 YIKEKKKVIIVESEKSVLFSDKFYGEG-NFVVAI-CGSNI-------S-----------EVQAEKLLRLGVEEVTIALDK 299 (373)
T ss_pred HhccCCeEEEEeccHHHHHHHHHhcCC-CcEEEC-ChhhC-------C-----------HHHHHHHHhcCCCcEEEEecC
Confidence 3468999999999999 788999 888885 46543 2 1235677765 599999999
Q ss_pred ---CccchHHHH
Q 009230 194 ---DPPGQALAE 202 (539)
Q Consensus 194 ---D~~G~~~~~ 202 (539)
|.+|.++.+
T Consensus 300 d~~d~~~~~~~~ 311 (373)
T PRK08624 300 EYMDVTEEEVYE 311 (373)
T ss_pred CccccchHHHHH
Confidence 677754443
No 57
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.77 E-value=6.4e-17 Score=161.66 Aligned_cols=211 Identities=14% Similarity=0.125 Sum_probs=144.6
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCC--CHHHHHHHHHH
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMEN--KVREHARKLLE 347 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~--~~~~~~~r~~~ 347 (539)
....++|+.+.||++++ +++|.++.|+|+||+|||+|++|++.+++.. .+.+|+|+++|. +++++.+.+..
T Consensus 80 s~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~ 159 (317)
T PRK04301 80 NVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEA 159 (317)
T ss_pred cCCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHH
Confidence 44568999999999985 9999999999999999999999999988753 135999999998 57766555422
Q ss_pred HhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEccccccccCC
Q 009230 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 348 ~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~~~~l~~~~ 426 (539)
.+. +.++ .+ ++.+++.. ........+...+..+..+ .++++|||||+..+....
T Consensus 160 --~g~--------------~~~~------~l-~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~ 214 (317)
T PRK04301 160 --LGL--------------DPDE------VL-DNIHVARA--YNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAE 214 (317)
T ss_pred --cCC--------------ChHh------hh-ccEEEEeC--CCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhh
Confidence 121 1111 12 23344422 1111223445555555555 689999999999886532
Q ss_pred -CCCCC---HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCC
Q 009230 427 -PVSQT---ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAG 501 (539)
Q Consensus 427 -~~~~~---~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~ 501 (539)
....+ +...+.+++..|+.+|+++||+||++.| ..+.....+. .....|...+.+.+++.|.|.+...
T Consensus 215 ~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnqv~~~~~~~~~~---~~~~~~G~~~~~~~~~rl~l~k~~~---- 287 (317)
T PRK04301 215 YVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGD---PTQPIGGHILGHTATFRIYLRKSKG---- 287 (317)
T ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeceEEeccccccCc---cccCCcchHhHhheeEEEEEEecCC----
Confidence 11111 2334667889999999999999999999 5443221111 1122345568899999999997532
Q ss_pred CCCcEEEEEEEeeCCCccee
Q 009230 502 PIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 502 ~~~~~~l~i~K~R~g~~G~~ 521 (539)
+.+.+.+.|++.++.|..
T Consensus 288 --~~R~~~v~k~~~~~~~~~ 305 (317)
T PRK04301 288 --NKRIARLVDSPHLPEGEA 305 (317)
T ss_pred --CceEEEEEeCCCCCCceE
Confidence 256899999999988875
No 58
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.77 E-value=1.6e-17 Score=159.95 Aligned_cols=211 Identities=18% Similarity=0.232 Sum_probs=140.9
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHH
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLE 347 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~ 347 (539)
....|+||.+.||.+++ ++.|.+|-|+|+||+|||.|++|++.++... .+.+|+||+.|.+ ++++.+ +..
T Consensus 16 ~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHH
T ss_pred cCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhh
Confidence 34679999999999995 9999999999999999999999999987653 2578999999964 444432 211
Q ss_pred HhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH---HHHHHcCCcEEEEcccccccc
Q 009230 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK---AAVLRHGVRGLVIDPYNELDH 424 (539)
Q Consensus 348 ~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~---~~~~~~~~~~vvID~~~~l~~ 424 (539)
. + .++.++ +-++.++++ ..+.+++.+.+. ....+.++++|||||+..++.
T Consensus 95 ~----------~-----~~~~~~-------~l~~I~v~~-----~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 95 R----------F-----GLDPEE-------ILDNIFVIR-----VFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR 147 (256)
T ss_dssp H----------T-----TS-HHH-------HHHTEEEEE------SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH
T ss_pred c----------c-----ccccch-------hhhceeeee-----cCCHHHHHHHHHHHHhhccccceEEEEecchHHHHH
Confidence 0 0 132222 223445543 234555544443 334567899999999999875
Q ss_pred CC--CCC--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCC
Q 009230 425 QR--PVS--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499 (539)
Q Consensus 425 ~~--~~~--~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~ 499 (539)
.. +.+ ..+...+..++..|+.+|++++++|+++.| ..+.+....-......=.++..+.+.+++.|.|.+.+.
T Consensus 148 ~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~~~~Rl~l~k~~~-- 225 (256)
T PF08423_consen 148 SEFSGRGDLAERQRMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHAVTTRLFLSKGRG-- 225 (256)
T ss_dssp HHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHHSSEEEEEEECST--
T ss_pred HHHccchhhHHHHHHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhhccEEEEEEeCCC--
Confidence 32 111 124567889999999999999999999999 55443310000000111356779999999999998542
Q ss_pred CCCCCcEEEEEEEeeCCCccee
Q 009230 500 AGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 500 ~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
..+.+.|.|..+-+.+..
T Consensus 226 ----~~R~~~i~ksp~~p~~~~ 243 (256)
T PF08423_consen 226 ----SERVATIVKSPSLPEGSA 243 (256)
T ss_dssp ----TEEEEEEEECSSSSSEEE
T ss_pred ----CeEEEEEeECCCCCCceE
Confidence 257889999998877653
No 59
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.77 E-value=1e-16 Score=160.04 Aligned_cols=212 Identities=16% Similarity=0.144 Sum_probs=142.6
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCC--CHHHHHHHHH
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMEN--KVREHARKLL 346 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~--~~~~~~~r~~ 346 (539)
.....++|+.+.+|.+++ ++.|.++.|+|+||+|||+|++|++.+++.. .+.+|+|+++|. +++++.+.+.
T Consensus 72 ~s~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 72 KTIGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 344568899999999996 9999999999999999999999999987641 134999999998 5766544332
Q ss_pred HHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccccccc
Q 009230 347 EKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH--GVRGLVIDPYNELDH 424 (539)
Q Consensus 347 ~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~--~~~~vvID~~~~l~~ 424 (539)
. .+ ++.++ +.++..++... .....-.+.+.+..+..+. .+++|||||+..+..
T Consensus 152 ~--~g--------------l~~~~-------~~~~i~i~~~~--~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 152 A--RG--------------LDPDE-------VLKNIYVARAY--NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred H--cC--------------CCHHH-------HhhceEEEecC--CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhh
Confidence 1 12 22211 11233443211 1111112334444555554 389999999998754
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCC
Q 009230 425 QRPVSQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPE 499 (539)
Q Consensus 425 ~~~~~~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~ 499 (539)
..-.+. .+.+.+.+++..|+.+|+++||+|+++.| ..+.....+. .....|...++..+++.|.|.+...
T Consensus 207 ~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnqv~~~~~~~~~~---~~~~~~G~~~~h~~~~rl~l~~~~~-- 281 (310)
T TIGR02236 207 AEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPDAFFGD---PTRPIGGHILGHAATFRVYLRKGKG-- 281 (310)
T ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcEEEEeceeeecCccccCc---cccCCcchhhhhheeEEEEEEecCC--
Confidence 321111 12234677889999999999999999999 5443211111 1123467789999999999998432
Q ss_pred CCCCCcEEEEEEEeeCCCccee
Q 009230 500 AGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 500 ~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
+.+.+.+.|+|.++.|..
T Consensus 282 ----~~R~~~~~k~~~~~~~~~ 299 (310)
T TIGR02236 282 ----DKRIARLVDSPHLPEGEA 299 (310)
T ss_pred ----CeEEEEEEECCCCCCeeE
Confidence 246799999999999875
No 60
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.75 E-value=8.1e-17 Score=169.62 Aligned_cols=201 Identities=12% Similarity=0.087 Sum_probs=136.0
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
.++||+++||++++ |++|.+++|.|+||+|||+|++|++.+.+.+.|.+++|+|+|++++++.+++.+ .|+++.+.
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~--~G~~~~~~ 79 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARS--FGWDLQKL 79 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHH--cCCCHHHH
Confidence 48999999999985 999999999999999999999999999887558999999999999999888754 35544332
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhccceeEeecC-------CCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCC
Q 009230 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-------DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~-------~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~ 430 (539)
.. .+.+.++...+ .....++.+...+.......+++.||||++..+.....
T Consensus 80 ~~-------------------~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~--- 137 (484)
T TIGR02655 80 VD-------------------EGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD--- 137 (484)
T ss_pred hh-------------------cCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC---
Confidence 11 01111111000 12345677777777777778899999998887754321
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEE
Q 009230 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 510 (539)
Q Consensus 431 ~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i 510 (539)
........+.+-++ ..++.++++++++|...... +....+..++.||.||.|....... .....+.|
T Consensus 138 ~~~~~r~~l~~Li~-~L~~~g~TvLLtsh~~~~~~---------~~~~~~~~e~laDgVI~L~~~~~~~---~~~R~l~I 204 (484)
T TIGR02655 138 AVSVVRREIFRLVA-RLKQIGVTTVMTTERIEEYG---------PIARYGVEEFVSDNVVILRNVLEGE---RRRRTLEI 204 (484)
T ss_pred chHHHHHHHHHHHH-HHHHCCCEEEEEecCccccc---------ccccCCceeEeeeeEEEEEEEecCC---EEEEEEEE
Confidence 11112223333333 33467999999999332211 0111222378999999998654321 12467999
Q ss_pred EEeeCCC
Q 009230 511 RKVRNKV 517 (539)
Q Consensus 511 ~K~R~g~ 517 (539)
.|.|...
T Consensus 205 ~K~Rgs~ 211 (484)
T TIGR02655 205 LKLRGTS 211 (484)
T ss_pred EECCCCC
Confidence 9999653
No 61
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.75 E-value=7.3e-17 Score=171.90 Aligned_cols=202 Identities=14% Similarity=0.163 Sum_probs=146.1
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....++||+++||++++ +++|.+++|.|+||+|||+|+++++.+.+.+ |.+|+|+|+|++++++..++.+ .|+++
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~-g~~~~yis~e~~~~~i~~~~~~--~g~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRR-GERCLLFAFEESRAQLIRNARS--WGIDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCHHHHHHHHHH--cCCCh
Confidence 45679999999999995 9999999999999999999999999999885 9999999999999999887743 34443
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
.+... .+...++. .......++++...+...+.++++++|||||++.+.... . ..
T Consensus 328 ~~~~~-------------------~g~l~i~~-~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~----~-~~ 382 (509)
T PRK09302 328 EKMEE-------------------KGLLKIIC-ARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGG----S-LN 382 (509)
T ss_pred HHHhh-------------------cCCceeec-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC----C-HH
Confidence 22110 11111221 112233567777788887888899999999999886422 1 23
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEee
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R 514 (539)
.+.+.+..|..+++++|++++++.|...... ..... ...+++.||.+|.|...+.... -...+.|.|.|
T Consensus 383 ~~~~~l~~l~~~~k~~~~t~l~t~~~~~~~g--~~~~~------~~~~~~l~D~vI~L~~~~~~~~---~~R~l~I~K~R 451 (509)
T PRK09302 383 EFRQFVIRLTDYLKSEEITGLFTNLTPDFMG--SHSIT------ESHISSLTDTWILLQYVEINGE---MNRALYVLKMR 451 (509)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccccccC--CCCCC------cCceEEeeeEEEEEEEeecCCe---eEEEEEEEEcC
Confidence 4567788899999999999999998332110 00011 1236789999999987654221 14678999999
Q ss_pred CCC
Q 009230 515 NKV 517 (539)
Q Consensus 515 ~g~ 517 (539)
...
T Consensus 452 g~~ 454 (509)
T PRK09302 452 GSW 454 (509)
T ss_pred CCC
Confidence 754
No 62
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.74 E-value=1.2e-16 Score=153.14 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=138.5
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....++||++.||++++ +++|++++|.|+||+|||+|+.|++...+.+ |.+|+|+++|.+++++.+++.+ .|++.
T Consensus 3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~~~~~~~~~~~~--~g~~~ 79 (234)
T PRK06067 3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTENTSKSYLKQMES--VKIDI 79 (234)
T ss_pred CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCCCHHHHHHHHHH--CCCCh
Confidence 34569999999999985 9999999999999999999999999998885 9999999999999999888754 34433
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeec----CCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCC
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~----~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~ 430 (539)
.+... .....++... .......+.+...+...+.+.++++||||++..+....
T Consensus 80 ~~~~~-------------------~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~---- 136 (234)
T PRK06067 80 SDFFL-------------------WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA---- 136 (234)
T ss_pred hHHHh-------------------CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC----
Confidence 22100 0111111000 01123456777777777777899999999988764321
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEE
Q 009230 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCV 510 (539)
Q Consensus 431 ~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i 510 (539)
+ ...+..++..|+.+++ .++++++++|......+ ....+...+|.++.|...+... .-...|.|
T Consensus 137 ~-~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~-----------~~~~~~~l~DgvI~L~~~~~~~---~~~r~l~i 200 (234)
T PRK06067 137 E-EDDILNFLTEAKNLVD-LGKTILITLHPYAFSEE-----------LLSRIRSICDVYLKLRAEQIGG---RYVKVLEV 200 (234)
T ss_pred C-HHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHH-----------HHHHHHhheEEEEEEEeeccCC---EEeEEEEE
Confidence 1 2335666677766665 58889998883221110 0134678999999998654321 22467999
Q ss_pred EEeeCCCc
Q 009230 511 RKVRNKVV 518 (539)
Q Consensus 511 ~K~R~g~~ 518 (539)
.|.|....
T Consensus 201 ~K~Rg~~~ 208 (234)
T PRK06067 201 VKLRGARK 208 (234)
T ss_pred EhhcCCCC
Confidence 99997644
No 63
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.71 E-value=3.9e-16 Score=149.95 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=123.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHh-----------cCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEH-----------AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAER 365 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~-----------~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~ 365 (539)
|.+.+|+|+||+|||+|++++|.++|.. .+.+|+|+++|++..++.+|+.+.........+.. .
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~-----r 75 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGD-----R 75 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCccc-----c
Confidence 6899999999999999999999998842 25789999999999999999987665543221110 0
Q ss_pred CCHHHHHHHHHHhhccceeEeecCCC-CCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHH
Q 009230 366 MTVEEFEQGKAWLSNTFSLIRCENDS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVK 444 (539)
Q Consensus 366 l~~~~~~~~~~~l~~~~~~i~~~~~~-~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk 444 (539)
+-. ......++.+. ... ......+...++. +...++++||||++..+ ... ..++......++..|+
T Consensus 76 l~~-------~~g~~~~l~~~--~~~~~~~~~~~~~l~~~-~~~~~~~lvviDpl~~~-~~~--~~~d~~~~~~~~~~L~ 142 (239)
T cd01125 76 LFI-------DSGRIQPISIA--REGRIIVVPEFERIIEQ-LLIRRIDLVVIDPLVSF-HGV--SENDNGAMDAVIKALR 142 (239)
T ss_pred eEE-------eccCCCceecc--cCCcccccHHHHHHHHH-HHhcCCCEEEECChHHh-CCC--CcCCHHHHHHHHHHHH
Confidence 000 00000111110 001 1122333333332 33578999999988777 221 2344556778999999
Q ss_pred HHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC
Q 009230 445 RFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP 498 (539)
Q Consensus 445 ~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~ 498 (539)
.+++++|++|++++|..|.... .....++.+||.++...++.++.|.+..+.
T Consensus 143 ~~a~~~g~avl~v~H~~K~~~~--~~~~~~~~rGssal~~~~r~~~~l~~~~~~ 194 (239)
T cd01125 143 RIAAQTGAAILLVHHVRKGSAK--DGDTQEAARGASALVDGARWVRALTRMTSE 194 (239)
T ss_pred HHHHHhCCEEEEEeccCccccc--CcccccccCcHHHHhcccceEEEEeeCCHH
Confidence 9999999999999994443321 114667899999999999999999997754
No 64
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.69 E-value=1.5e-15 Score=140.38 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=117.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHh
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l 378 (539)
.++|.|+||+|||+|+++++...+.+ |.+|+|+|+|++++++..++.+. |++...+...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~~~~~~~~~~~~--g~~~~~l~~~------------------ 59 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEESPEELIENAESL--GWDLERLEDE------------------ 59 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCCHHHHHHHHHHc--CCChHHHHhc------------------
Confidence 37899999999999999999999985 99999999999999999887654 5543322110
Q ss_pred hccceeEeecC----CC-CCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 009230 379 SNTFSLIRCEN----DS-LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453 (539)
Q Consensus 379 ~~~~~~i~~~~----~~-~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~ 453 (539)
....++...+ .+ ....+++...+...+...++++||||++..+... +.......+.+.++.+. +.|++
T Consensus 60 -g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~-----~~~~~~~~i~~l~~~l~-~~g~t 132 (187)
T cd01124 60 -GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLM-----EQSTARLEIRRLLFALK-RFGVT 132 (187)
T ss_pred -CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhc-----ChHHHHHHHHHHHHHHH-HCCCE
Confidence 0111110000 00 0011245566667777789999999988876542 12222233444444443 45999
Q ss_pred EEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCc
Q 009230 454 VWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVV 518 (539)
Q Consensus 454 vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~ 518 (539)
+++++| ..... ...++..+++.||.++.|++..... .....+.|.|+|..+.
T Consensus 133 vi~v~~~~~~~~----------~~~~~~~~~~~aD~ii~l~~~~~~~---~~~r~l~i~K~R~~~~ 185 (187)
T cd01124 133 TLLTSEQSGLEG----------TGFGGGDVEYLVDGVIRLRLDEEGG---RLRRSLSVVKMRGGPH 185 (187)
T ss_pred EEEEeccccCCC----------cccCcCceeEeeeEEEEEEEEccCC---EEEEEEEEEEccCCCC
Confidence 999999 43321 1235567899999999999875321 1245699999997643
No 65
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.69 E-value=3.1e-15 Score=142.06 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=135.5
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
.+.++++.||++++ +++|++++|.|+||+|||+|+++++...+.+ |.+++|+++|.++.++.+.+.+ .|.+....
T Consensus 5 ~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-g~~~~yi~~e~~~~~~~~~~~~--~g~~~~~~ 81 (230)
T PRK08533 5 KIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQN-GYSVSYVSTQLTTTEFIKQMMS--LGYDINKK 81 (230)
T ss_pred EEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHH--hCCchHHH
Confidence 46778999999996 9999999999999999999999999998875 9999999999999988877732 33332211
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhccceeEeecCC--CCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHH
Q 009230 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND--SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~--~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~ 435 (539)
. ..+.+.++...+. +....+.....+.......+++++|||++..+.... .+...
T Consensus 82 ~-------------------~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~----~d~~~ 138 (230)
T PRK08533 82 L-------------------ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISND----ASEVA 138 (230)
T ss_pred h-------------------hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCC----cchHH
Confidence 0 0112222211111 111123344444444445689999999998876321 11223
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeC
Q 009230 436 VSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRN 515 (539)
Q Consensus 436 ~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~ 515 (539)
...+++.|+.+++. +++++++++...... .....+++.||.||.|...+.... -...+.|.|.|-
T Consensus 139 ~~~l~~~l~~l~~~-g~tvi~t~~~~~~~~-----------~~~~~~~~~~DgvI~L~~~~~~~~---~~R~i~V~KmR~ 203 (230)
T PRK08533 139 VNDLMAFFKRISSL-NKVIILTANPKELDE-----------SVLTILRTAATMLIRLEVKVFGGD---LKNSAKIVKYNM 203 (230)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeccccccc-----------ccceeEEEeeeEEEEEEEeecCCE---EEEEEEEEEecC
Confidence 45566677767654 776666655322111 011357899999999997664321 146688999997
Q ss_pred CCcceeeeEEEEEeCCCc
Q 009230 516 KVVGTIGEAFLSYNRVTG 533 (539)
Q Consensus 516 g~~G~~~~~~l~fd~~~~ 533 (539)
-+...-+.+++.+.+-.|
T Consensus 204 ~~~~~~~~~~f~i~~~~g 221 (230)
T PRK08533 204 AKGSFQKSIPFRVEPKIG 221 (230)
T ss_pred CccccCCEEEEEEcCCcc
Confidence 322211245666665544
No 66
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.67 E-value=6e-15 Score=143.58 Aligned_cols=208 Identities=18% Similarity=0.192 Sum_probs=143.3
Q ss_pred cccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc
Q 009230 279 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~ 356 (539)
..+|||+++||++++ +++|.+++|.|+||+|||+|++|++.+.+.. |.+|+|+|+|++++++...+.+ .|.++..
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l~~~~~~--~g~d~~~ 79 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEELLENARS--FGWDLEV 79 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHHHHHHHHHH--cCCCHHH
Confidence 468999999999996 9999999999999999999999999999996 9999999999999999877755 4555432
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHH
Q 009230 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYV 436 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~ 436 (539)
....+ .+...+ +..........+ .....+++.+...+..++...+...+||||+..+.... +.....
T Consensus 80 ~~~~g---~l~i~d---~~~~~~~~~~~~---~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~----~~~~~~ 146 (260)
T COG0467 80 YIEKG---KLAILD---AFLSEKGLVSIV---VGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYL----NDPALV 146 (260)
T ss_pred HhhcC---CEEEEE---cccccccccccc---ccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhc----CchHHH
Confidence 21110 000000 000000000001 01234677888999999999999999999998654321 222233
Q ss_pred HHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcE-EEEEEEeeC
Q 009230 437 SQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV-QVCVRKVRN 515 (539)
Q Consensus 437 ~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~-~l~i~K~R~ 515 (539)
..++..++.+.++++++.+++++....... . ++..+..+|.+|-|......... .. .+.+.|.|.
T Consensus 147 r~~~~~l~~~~~~~~~t~~~~~~~~~~~~~----~-------~~~~~~~vdgvI~l~~~~~~~~~---~r~~~~i~k~r~ 212 (260)
T COG0467 147 RRILLLLKRFLKKLGVTSLLTTEAPVEERG----E-------SGVEEYIVDGVIRLDLKEIEGGG---DRRYLRILKMRG 212 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccCCC----c-------cceEEEEEEEEEEEeeecccCce---EEEEEEEEeccc
Confidence 678889999999999999998883222110 0 03445699999999876543221 23 788888887
Q ss_pred C
Q 009230 516 K 516 (539)
Q Consensus 516 g 516 (539)
-
T Consensus 213 ~ 213 (260)
T COG0467 213 T 213 (260)
T ss_pred c
Confidence 3
No 67
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.67 E-value=6.6e-15 Score=158.55 Aligned_cols=217 Identities=17% Similarity=0.107 Sum_probs=149.9
Q ss_pred CCccccccCchhhhhhh--c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~--~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
.....++||++.||.++ | +++|.++.|+|+||+|||+|+++++.+.+.+ |.+|+|+++|.+...- + +...|+
T Consensus 36 ~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~-G~~v~yId~E~t~~~~--~--A~~lGv 110 (790)
T PRK09519 36 QPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEHALDPD--Y--AKKLGV 110 (790)
T ss_pred cCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchhHH--H--HHHcCC
Confidence 34568999999999998 4 9999999999999999999999999988875 9999999999887732 2 222344
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc-CC--CC-
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QR--PV- 428 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~-~~--~~- 428 (539)
+... .++. ...+.+.+...+..++.+.++++|||||++.+.. .. +.
T Consensus 111 Dl~~-------------------------llv~-----~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~ 160 (790)
T PRK09519 111 DTDS-------------------------LLVS-----QPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEM 160 (790)
T ss_pred ChhH-------------------------eEEe-----cCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCC
Confidence 3221 1222 2334566777777777778899999999998884 11 11
Q ss_pred CCC---H-HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCC
Q 009230 429 SQT---E-TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 501 (539)
Q Consensus 429 ~~~---~-~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~ 501 (539)
+.. . ...+.+++..|..+++++||+||++.|.+..-+... ++...--|...+...|.+-|.|.+.+. .+..
T Consensus 161 g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~~f--g~p~~~~GG~~l~h~ss~Ri~lrk~~~ik~~~~~ 238 (790)
T PRK09519 161 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMF--GSPETTTGGKALKFYASVRMDVRRVETLKDGTNA 238 (790)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCCcC--CCCCcCCCCcccceeccEEEEeeeccccccCccc
Confidence 111 1 122356888899999999999999999444321111 111223467778999999999987532 1112
Q ss_pred CCCcEEEEEEEeeCCCcceeeeEEEEEeCCCce
Q 009230 502 PIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGE 534 (539)
Q Consensus 502 ~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~r 534 (539)
..+.+.+.|.|++.=+.++ ..|+..||+
T Consensus 239 ~G~~~~~kv~ks~cLpe~e-----~v~~i~tG~ 266 (790)
T PRK09519 239 VGNRTRVKVVKNKCLAEGT-----RIFDPVTGT 266 (790)
T ss_pred cceEEEEEEEECCCCCCce-----EEEEecCCC
Confidence 2456788899888655443 446666653
No 68
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.64 E-value=4.2e-14 Score=135.58 Aligned_cols=217 Identities=19% Similarity=0.175 Sum_probs=149.6
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC--HHHHHHHHHHHhhC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK--VREHARKLLEKHIK 351 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~--~~~~~~r~~~~~~~ 351 (539)
.....++||...||.++| +++|.++-|+|++|+|||++++|++.++... |..++|++.|-+ ++++. -++. +
T Consensus 37 ~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~-g~~a~fIDtE~~l~p~r~~--~l~~--~ 111 (279)
T COG0468 37 EDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP-GGKAAFIDTEHALDPERAK--QLGV--D 111 (279)
T ss_pred hccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcC-CCeEEEEeCCCCCCHHHHH--HHHH--h
Confidence 346789999999999997 9999999999999999999999999998885 889999999964 44321 1111 0
Q ss_pred CCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcC--CcEEEEccccccccCCCCC
Q 009230 352 KPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVS 429 (539)
Q Consensus 352 ~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~--~~~vvID~~~~l~~~~~~~ 429 (539)
.+ +.+++. ...+.++-...+..+..... +++|||||++.+.......
T Consensus 112 -------------------------~~-d~l~v~-----~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~ 160 (279)
T COG0468 112 -------------------------LL-DNLLVS-----QPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE 160 (279)
T ss_pred -------------------------hh-cceeEe-----cCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC
Confidence 01 122332 23334444444444444444 9999999999987643111
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHhCcEEEEEecCC-CCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCC
Q 009230 430 ----QTETEYVSQMLTMVKRFAQHHACHVWFVAHPR-QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPID 504 (539)
Q Consensus 430 ----~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r-~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~ 504 (539)
....+.+...++.|..+|+++|++|+++.|.+ +.....+ +...=-|...+...|.+.+.+.+....-....+
T Consensus 161 d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~---~~~~~~GG~~L~~~as~rl~l~k~~~~~~~~g~ 237 (279)
T COG0468 161 DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFG---DPETTTGGNALKFYASVRLDLRRIESLKEDVGN 237 (279)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccC---CcccCCCchHHHhhhheEEEEeeccccccccCC
Confidence 12334677899999999999999999999943 3322111 222334677888999999999886320000234
Q ss_pred cEEEEEEEeeCCCcceeeeEEEEEeCC
Q 009230 505 RVQVCVRKVRNKVVGTIGEAFLSYNRV 531 (539)
Q Consensus 505 ~~~l~i~K~R~g~~G~~~~~~l~fd~~ 531 (539)
.+.+.+.|+|.-+.+..-.+.+.|+.-
T Consensus 238 ~r~~~vvk~~~~p~~~~a~f~I~~~~~ 264 (279)
T COG0468 238 KRRVKVVKNKVAPPFKEAEFDITYGGG 264 (279)
T ss_pred eEEEEEEeCCCCCCCceeEEEeecCcc
Confidence 688999999999888544556666643
No 69
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=99.63 E-value=2.3e-14 Score=140.02 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=144.1
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
.....+|||++.||..++ +++|.++.|+|++++|||+|+++++.++... |..++|+..|-+...- + +...|+
T Consensus 29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~-g~~~a~ID~e~~ld~~---~-a~~lGv 103 (322)
T PF00154_consen 29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ-GGICAFIDAEHALDPE---Y-AESLGV 103 (322)
T ss_dssp CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-T-EEEEEESSS---HH---H-HHHTT-
T ss_pred cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc-cceeEEecCcccchhh---H-HHhcCc
Confidence 345679999999999884 9999999999999999999999999887765 9999999999765432 2 223466
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC---C--
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR---P-- 427 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~---~-- 427 (539)
++. +.+++.+ .+.++..+.++.+++...+++|||||+..+.... +
T Consensus 104 dl~-------------------------rllv~~P-----~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~ 153 (322)
T PF00154_consen 104 DLD-------------------------RLLVVQP-----DTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEI 153 (322)
T ss_dssp -GG-------------------------GEEEEE------SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTST
T ss_pred ccc-------------------------ceEEecC-----CcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhcc
Confidence 543 2344421 2346666777777777778999999999885421 1
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCC
Q 009230 428 ---VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 501 (539)
Q Consensus 428 ---~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~ 501 (539)
........+.++++.|..+..+.|+++|++.|.|..-+.....| .-..|+.++.+.|++.|-+.+.+. .+..
T Consensus 154 ~~~~~g~~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~~g~~--~~t~GG~alkfyas~rl~i~k~~~ik~~~~~ 231 (322)
T PF00154_consen 154 GDQQVGLQARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVMFGNP--ETTPGGRALKFYASVRLEIRKKEQIKEGDEV 231 (322)
T ss_dssp SSTSSSHHHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSSSSSS--SCCTSHHHHHHHCSEEEEEEEEEEEEETTCE
T ss_pred ccccCcchHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhccCCC--cCCCCCchhhhhhhhHHhhhcccccccCCcc
Confidence 01123346788899999999999999999999665432111122 234688999999999999987542 1111
Q ss_pred CCCcEEEEEEEeeCCCcceeeeEEEEEeC
Q 009230 502 PIDRVQVCVRKVRNKVVGTIGEAFLSYNR 530 (539)
Q Consensus 502 ~~~~~~l~i~K~R~g~~G~~~~~~l~fd~ 530 (539)
....+.+.|.|||-.+.-..-.+.+.|+.
T Consensus 232 iG~~~~vkv~KnKva~P~k~a~~~i~y~~ 260 (322)
T PF00154_consen 232 IGNKIKVKVVKNKVAPPFKKAEFDIYYGR 260 (322)
T ss_dssp CEEEEEEEEEEESSS-TTEEEEEEEETTT
T ss_pred cccEEEEEEEEcccCCCcceeEEEEecCC
Confidence 23467899999999766554445666543
No 70
>PF13155 Toprim_2: Toprim-like
Probab=99.53 E-value=1.5e-14 Score=118.08 Aligned_cols=85 Identities=31% Similarity=0.368 Sum_probs=60.5
Q ss_pred EEEechhhHHHHHHhCCCce----EEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHh--ccCCEEEEEecCCccchHH
Q 009230 127 IIVEGEMDKLSMEEAGFLNC----VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYL--KQASRIILATDGDPPGQAL 200 (539)
Q Consensus 127 ~i~EG~~Dalsl~~~g~~~~----v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l--~~~~~ivl~~DnD~~G~~~ 200 (539)
|||||++|+||++|++..+. +++++++.... .....+| .+.++|++|+|||+||+++
T Consensus 1 ~v~Eg~iDaLS~~~~~~~~~~~~~~~l~~~~~~~~-----------------~~~~~~l~~~~~~~i~l~~DnD~aG~~~ 63 (96)
T PF13155_consen 1 VVFEGPIDALSYYQLGKENIKDNSLSLAGGGTLSE-----------------KQQIKFLKENPYKKIVLAFDNDEAGRKA 63 (96)
T ss_pred cEEeCHHHHHHHHHhCchhcCCceEEEECCchHHH-----------------HHHHHHHHhCCCCcEEEEeCCCHHHHHH
Confidence 68999999999999987642 45554443210 1123455 3347899999999999999
Q ss_pred HHHHHHHhcCCc-----eEEEecCCCCCCCCCCChHHHH
Q 009230 201 AEELARRVGRER-----CWRVRWPKKNDVDHFKDANEVL 234 (539)
Q Consensus 201 ~~~~~~~l~~~~-----~~~~~~p~~~~~~~~kD~nd~l 234 (539)
++++.+.+.... +.+..+| .+|||||+|
T Consensus 64 ~~~~~~~l~~~~~~~~~~~~~~~~------~~KD~Nd~L 96 (96)
T PF13155_consen 64 AEKLQKELKEEGFPNIKVRIEDPP------DGKDWNDYL 96 (96)
T ss_pred HHHHHHHHHhhCCCcceeeecCCC------CCcCchhhC
Confidence 999999885432 3334444 459999986
No 71
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.49 E-value=6.3e-13 Score=119.68 Aligned_cols=163 Identities=21% Similarity=0.238 Sum_probs=110.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHh
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l 378 (539)
+++|.|+||+|||+|+.+++...+.+ +.+|+|++.|.....+..++...... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~~~~~~~~~~~~~~~~------------------------~~~ 55 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEEEIEELTERLIGESLK------------------------GAL 55 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCcchHHHHHHHhhhhhc------------------------ccc
Confidence 37899999999999999999998884 99999999999988776665211000 001
Q ss_pred hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCC-CCCHHHHHHHHHHHHHHHHHHhCcEEEEE
Q 009230 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV-SQTETEYVSQMLTMVKRFAQHHACHVWFV 457 (539)
Q Consensus 379 ~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~-~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~ 457 (539)
....++. ..............+.......+++++|||++..+...... .......+.+.+..|..++++.+++|+++
T Consensus 56 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~ 133 (165)
T cd01120 56 -DNLIIVF-ATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFT 133 (165)
T ss_pred -ccEEEEE-cCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEE
Confidence 1122221 11233334444445556667788999999988877542110 00112345678888899999999999999
Q ss_pred ec-CCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 458 AH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 458 ~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+| ++......+ +.+|+..+++.||.++.|.|
T Consensus 134 ~~~~~~~~~~~~------~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 134 LQVPSGDKGDPR------LTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred EecCCccccCcc------cccCccceeeecceEEEEeC
Confidence 99 544432111 17788999999999999875
No 72
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=2.5e-12 Score=115.36 Aligned_cols=212 Identities=17% Similarity=0.167 Sum_probs=145.9
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
-+++|=++||+-+| ++-|+|++|-|..|+|||.|+.+++.-++.+ |++|.|+|.|++..+....|.+.-.++..
T Consensus 9 ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~T~refi~qm~sl~ydv~~--- 84 (235)
T COG2874 9 IIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMN-GYRVTYVSTELTVREFIKQMESLSYDVSD--- 84 (235)
T ss_pred hccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhC-CceEEEEEechhHHHHHHHHHhcCCCchH---
Confidence 37889999999997 9999999999999999999999999998886 99999999999999999888764322211
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhccceeEeec----CCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 358 NYGGSAERMTVEEFEQGKAWLSNTFSLIRCE----NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~----~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
..+..++.++..+ ..+....+.+++.+....+...-++|+|||+..++.- ++.
T Consensus 85 ------------------~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~-----~~~ 141 (235)
T COG2874 85 ------------------FLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATY-----DSE 141 (235)
T ss_pred ------------------HHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhc-----ccH
Confidence 1133444444321 1122233455555555556677899999999887642 245
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEe
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~ 513 (539)
.++.+++..+|.|+. .|-.|+++.|+..-... . -..+.+.||+.+.|+-.+--.+ -.-.+.+.|-
T Consensus 142 ~~vl~fm~~~r~l~d-~gKvIilTvhp~~l~e~-----~------~~rirs~~d~~l~L~~~~~Gg~---~~~~~~i~K~ 206 (235)
T COG2874 142 DAVLNFMTFLRKLSD-LGKVIILTVHPSALDED-----V------LTRIRSACDVYLRLRLEELGGD---LIKVLEIVKY 206 (235)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeChhhcCHH-----H------HHHHHHhhheeEEEEhhhhCCe---eeEEEEEeee
Confidence 578889999999996 45556666664333210 0 1247789999999987664222 2456778888
Q ss_pred eCCCcceeeeEEEEEeCCCc
Q 009230 514 RNKVVGTIGEAFLSYNRVTG 533 (539)
Q Consensus 514 R~g~~G~~~~~~l~fd~~~~ 533 (539)
|....+.-..+.+.-+|..|
T Consensus 207 ~ga~~s~~~~I~F~V~P~~G 226 (235)
T COG2874 207 RGARKSFQNIISFRVEPGFG 226 (235)
T ss_pred cCchhhcCCceeEEecCCCc
Confidence 87544322234555555544
No 73
>PRK07078 hypothetical protein; Validated
Probab=99.43 E-value=8.9e-13 Score=143.44 Aligned_cols=138 Identities=24% Similarity=0.371 Sum_probs=100.5
Q ss_pred eEEEEeEe-eCCEEEEEEeecC----CCcccc--cC------CCCCccccccccCCCCcEEEEechhhHHHHHHhCCCce
Q 009230 80 VVIAFPYW-RNGKLVNCKYRDF----NKKFWQ--EK------DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGFLNC 146 (539)
Q Consensus 80 ~~i~fP~~-~~G~~~~~~~R~~----~~~~~~--~~------~~~~~l~g~~~~~~~~~v~i~EG~~Dalsl~~~g~~~~ 146 (539)
....+||. .+|+++...+|.. .|.|++ +. .....|||++.+.....|+|||||.||.++++.|+. +
T Consensus 134 ~~~~~~Y~D~~G~~~~~v~R~~~~~~~K~fr~~~g~~~~~~~~~~~pLy~lp~l~~a~~V~lvEGEk~adal~~~g~~-a 212 (759)
T PRK07078 134 ATAKWDYLDAAGKLIAVVYRYDPPGRRKEFRPWDAKRRKMAPPEPRPLYNQPGLLSAEQVVLVEGEKCAQALIDAGVV-A 212 (759)
T ss_pred ceeEEEEECCCCCEEEEEEeecCCCCCceeecccCCcceecCCCCcCCcCchhhhcCCeEEEEeChHHHHHHHhcCCe-E
Confidence 45678887 8899998888876 255654 21 234678999988777899999999999999999987 4
Q ss_pred EEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHHHHHHHHHh---cCCceEEEecCCCCC
Q 009230 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARRV---GRERCWRVRWPKKND 223 (539)
Q Consensus 147 v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~~~~~~~~l---~~~~~~~~~~p~~~~ 223 (539)
++.+.|+..... +.+ +..|.. ++||||+|||++|+++++++++.| +...|.++ +|.. +
T Consensus 213 tt~~~Ga~~~~~-----------~~d-----~~~L~g-~~VvI~pD~D~~G~~~a~~va~~l~~~g~~~~~v~-~p~~-~ 273 (759)
T PRK07078 213 TTAMHGANAPVD-----------KTD-----WSPLAG-KAVLIWPDRDKPGWEYADRAAQAILSAGASSCAVL-LPPE-D 273 (759)
T ss_pred EecCCCCCCCcc-----------ccc-----ccccCC-CEEEEEcCCChHHHHHHHHHHHHHHhcCCeEEEEE-ecCc-c
Confidence 555667754211 011 223554 799999999999999999999999 33344444 4532 1
Q ss_pred CCCCCChHHHHHhc
Q 009230 224 VDHFKDANEVLMYL 237 (539)
Q Consensus 224 ~~~~kD~nd~l~~~ 237 (539)
.+.++|++|++..+
T Consensus 274 ~~~~~D~aD~~~~G 287 (759)
T PRK07078 274 LPEGWDAADAIAEG 287 (759)
T ss_pred cCcCCCHHHHHHcC
Confidence 24689999999885
No 74
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.39 E-value=1.5e-11 Score=116.33 Aligned_cols=149 Identities=13% Similarity=0.183 Sum_probs=106.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc---------CCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---------GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAE 364 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~---------g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 364 (539)
|+.|-..+|+|.+|+|||+++++++.+++... -.+|+|+|+|...+++++|+-....++
T Consensus 86 fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m------------ 153 (402)
T COG3598 86 FRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARM------------ 153 (402)
T ss_pred hhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHc------------
Confidence 88888889999999999999999999998741 268999999999999999986554433
Q ss_pred CCCHHHHHHHHHH-hhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHH
Q 009230 365 RMTVEEFEQGKAW-LSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443 (539)
Q Consensus 365 ~l~~~~~~~~~~~-l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~L 443 (539)
.+++.+++.+..+ ++..- ...+...+ .+..+......+..+++||||++..+..+. +.....+.++++.+
T Consensus 154 gLsPadvrn~dltd~~Gaa-----~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~---s~s~vqv~~fi~~~ 224 (402)
T COG3598 154 GLSPADVRNMDLTDVSGAA-----DESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGK---SISDVQVKEFIKKT 224 (402)
T ss_pred CCChHhhhheeccccccCC-----CccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCc---cchhHHHHHHHHHH
Confidence 2444444332110 00000 00111122 455555555667789999999998887653 23346788999999
Q ss_pred HHHHHHhCcEEEEEecCCCC
Q 009230 444 KRFAQHHACHVWFVAHPRQL 463 (539)
Q Consensus 444 k~lA~~~~i~vi~~~q~r~~ 463 (539)
+++|..++|+||.+||+.+.
T Consensus 225 rkla~~l~caIiy~hHtsks 244 (402)
T COG3598 225 RKLARNLECAIIYIHHTSKS 244 (402)
T ss_pred HHHHHhcCCeEEEEeccccc
Confidence 99999999999999994433
No 75
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=99.38 E-value=2.3e-12 Score=100.72 Aligned_cols=74 Identities=30% Similarity=0.377 Sum_probs=57.1
Q ss_pred CcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccC-CEEEEEecCCccchHHHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAE 202 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~-~~ivl~~DnD~~G~~~~~ 202 (539)
++|+||||++|+||+++.|..++++++ |+... ..+...|.++ ++|++|+|||++|+++++
T Consensus 1 ~~v~i~EG~~D~ls~~~~g~~~~va~~-G~~~~------------------~~~~~~L~~~~~~vii~~D~D~aG~~a~~ 61 (79)
T cd03364 1 KKVILVEGYMDVIALHQAGIKNVVASL-GTALT------------------EEQAELLKRLAKEVILAFDGDEAGQKAAL 61 (79)
T ss_pred CeEEEEeCHHHHHHHHHcCCCCEEECC-CccCc------------------HHHHHHHHhcCCeEEEEECCCHHHHHHHH
Confidence 468999999999999999988888865 43321 0124566664 899999999999999999
Q ss_pred HHHHHhcC--CceEEE
Q 009230 203 ELARRVGR--ERCWRV 216 (539)
Q Consensus 203 ~~~~~l~~--~~~~~~ 216 (539)
++.++|.. ..++++
T Consensus 62 ~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 62 RALELLLKLGLNVRVL 77 (79)
T ss_pred HHHHHHHHCCCeEEEE
Confidence 99999943 334444
No 76
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.30 E-value=8.5e-12 Score=115.72 Aligned_cols=166 Identities=14% Similarity=0.155 Sum_probs=108.0
Q ss_pred cccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHH--h---cCCeEEEEeCCCCHH-HHHHHHHHHhh
Q 009230 279 FGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINE--H---AGWKFVLCSMENKVR-EHARKLLEKHI 350 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~--~---~g~~vl~~s~E~~~~-~~~~r~~~~~~ 350 (539)
..++||-..||+.++ +..+.+|-|+|.+|+|||.|++|+++..-. . .|..++|++.|.+-. +-...+.+...
T Consensus 82 ~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~~ 161 (351)
T KOG1564|consen 82 SKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTLP 161 (351)
T ss_pred hhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhcc
Confidence 458999999999996 999999999999999999999999887643 2 257899999997632 21122222221
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH----HHHHHcCCcEEEEccccccccCC
Q 009230 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK----AAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 351 ~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~----~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
..+ ..+..........++.+.. .-.+++.++..+. .+..+.++++|||||...+....
T Consensus 162 ~rp-------------~~~~~~~~~~Npgd~IFv~-----~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~fR~E 223 (351)
T KOG1564|consen 162 QRP-------------NPEKELNYNDNPGDHIFVE-----NVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALFRSE 223 (351)
T ss_pred cCC-------------CcchhhhhccCCCceEEEE-----eccchhhHHHHHhhhccceeccCcceEEEEehhhHHHHHH
Confidence 111 0010011111112233333 2234444444443 23455679999999999876532
Q ss_pred C----C-CCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCC
Q 009230 427 P----V-SQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 462 (539)
Q Consensus 427 ~----~-~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~ 462 (539)
- + ...+...+..+...|+.+|.+++++|+++.| ...
T Consensus 224 ~d~~~Sdl~~r~~~l~rla~~Lr~LA~~~~~aVV~~NQVtd~ 265 (351)
T KOG1564|consen 224 FDYNPSDLKKRARHLFRLAGKLRQLASKFDLAVVCANQVTDR 265 (351)
T ss_pred hccChhhhhhHHHHHHHHHHHHHHHHHhcCccEEEeeccccc
Confidence 1 1 1123456788999999999999999999999 444
No 77
>PF13362 Toprim_3: Toprim domain
Probab=99.25 E-value=3.7e-11 Score=97.82 Aligned_cols=91 Identities=31% Similarity=0.330 Sum_probs=65.6
Q ss_pred cEEEEechhhHHHH-HHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCcc--chHHH
Q 009230 125 DIIIVEGEMDKLSM-EEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPP--GQALA 201 (539)
Q Consensus 125 ~v~i~EG~~Dalsl-~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~--G~~~~ 201 (539)
+++||||+.|+||+ .+.....++++. |+.+... +......++|+||.|||.+ |++++
T Consensus 1 tl~i~EG~etals~~~~~~~~~~~a~~-~~~nl~~-------------------~~~~~~~~~vii~~D~D~~~~G~~~a 60 (96)
T PF13362_consen 1 TLIIAEGIETALSIAQQATGVPVVAAL-GAGNLKN-------------------VAIPEPGRRVIIAADNDKANEGQKAA 60 (96)
T ss_pred CEEEEEhHHHHHHHHHhcCCCeEEEEE-Chhhhhh-------------------hcCCCCCCeEEEEECCCCchhhHHHH
Confidence 48999999999999 566555566653 4444211 1112357899999999999 99999
Q ss_pred HHHHHHhcCCc--eEEEecCCCCCCCCCCChHHHHHhcCcc
Q 009230 202 EELARRVGRER--CWRVRWPKKNDVDHFKDANEVLMYLGPG 240 (539)
Q Consensus 202 ~~~~~~l~~~~--~~~~~~p~~~~~~~~kD~nd~l~~~g~~ 240 (539)
.++++++.... +.++. | ...++||||+|+..|.+
T Consensus 61 ~~~~~~~~~~g~~~~~~~-p----~~~g~D~ND~l~~~G~e 96 (96)
T PF13362_consen 61 EKAAERLEAAGIAVSIVE-P----GPEGKDWNDLLQARGKE 96 (96)
T ss_pred HHHHHHHHhCCCeEEEEC-C----CCCCchHHHHHHhhCCC
Confidence 99999996433 34444 3 13578999999998754
No 78
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=99.22 E-value=2.8e-11 Score=95.10 Aligned_cols=71 Identities=34% Similarity=0.606 Sum_probs=49.6
Q ss_pred CcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAE 202 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~ 202 (539)
+.++||||++|+++++++|+++++++.+++.. +..+ . ....+.. .++|+||+|+|.+|+++++
T Consensus 1 k~viIvEG~~D~~~l~~~g~~~~v~~~g~~~~-------~~~~------~---~~~~~~~~~~~Vii~~D~D~~G~~~a~ 64 (81)
T PF13662_consen 1 KEVIIVEGEFDAIALEQAGYKNVVAVLGGNLS-------PLDQ------I---LREKLEKKVKEVIIAFDNDKAGEKAAQ 64 (81)
T ss_dssp --EEEESSHHHHHHHHHTT-TTEEEESSSS----------HHH------H---HHHHHH---SEEEEEEESSHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHhCCCeEEEECCCCCC-------hHHH------h---ChHhhhccCceEEEEeCcCHHHHHHHH
Confidence 46999999999999999999998887654431 1110 0 0122322 5899999999999999999
Q ss_pred HHHHHhcC
Q 009230 203 ELARRVGR 210 (539)
Q Consensus 203 ~~~~~l~~ 210 (539)
++.+.|..
T Consensus 65 ~i~~~l~~ 72 (81)
T PF13662_consen 65 KIAKKLLP 72 (81)
T ss_dssp HHHHHHG-
T ss_pred HHHHHHHh
Confidence 99998854
No 79
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.22 E-value=4.5e-11 Score=109.34 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=125.5
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHH
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENKVREHARKLLEK 348 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~~~~~~~~r~~~~ 348 (539)
.....|.||-..||.++| +..=.+|-|+|.+|+|||.+..+++...-.. .+.++.|+..|.+-.- .|+...
T Consensus 92 ~~v~~ItTgs~~lD~ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrp--dRi~~I 169 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRP--DRIKDI 169 (335)
T ss_pred hccceeecchHHHhhhhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccch--HHHHHH
Confidence 455679999999999997 8888999999999999999999988765432 2579999999976321 122221
Q ss_pred hhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEEEccccccccCCC
Q 009230 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 349 ~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vvID~~~~l~~~~~ 427 (539)
.-+. .+.++.. | +..+|+++- .....-+++..+.....++ ..++||||+++.++..+-
T Consensus 170 Ae~~------------~~d~d~~------L-dNI~y~Ra~--~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy 228 (335)
T KOG1434|consen 170 AERF------------KVDPDFT------L-DNILYFRAY--NSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDY 228 (335)
T ss_pred HHHh------------CCCHHHH------H-HHHHHHHHc--ChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecc
Confidence 1110 2333321 1 122333221 1111112223333334444 589999999999876542
Q ss_pred C--C--CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCC-----CCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 428 V--S--QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN-----WVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 428 ~--~--~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~-----~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+ + ..+.+.+.+++.+|..+|+++|++|+++.| ..+... ..+..| .|+..+...+.+-++|++..
T Consensus 229 ~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvttdpga~~~f~s~~~kp-----~gGh~~aHAsttRlilrkgr 302 (335)
T KOG1434|consen 229 DGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVTTDPGAGMTFASQDLKP-----AGGHSWAHASTTRLILRKGR 302 (335)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccEEEEEecceecCCcccccccccccCc-----cccchhhhhhheeEEEEcCC
Confidence 1 1 234567889999999999999999999999 555432 112223 35566777778888888766
No 80
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=99.21 E-value=1.3e-10 Score=139.32 Aligned_cols=178 Identities=17% Similarity=0.216 Sum_probs=116.5
Q ss_pred hhhcccccCCCCCCcHHHHHHH-HhcCCCHHHHHHcCccccc---C----CceeEEEEeEe-eCCEEEEEEeecCCC---
Q 009230 35 IREITEDSLELEPLGNELRAYF-AERLISAETLRRNRVMQKR---H----GHEVVIAFPYW-RNGKLVNCKYRDFNK--- 102 (539)
Q Consensus 35 ~~~~~~~~~~~~p~~~~~~~Yl-~~Rgi~~~~~~~~~~~~~~---~----~~~~~i~fP~~-~~G~~~~~~~R~~~~--- 102 (539)
++.+|....+. ....+..|| ..|||+. +..+.++.+. + ...++++||+. .+|+++++..+.+++
T Consensus 1672 A~rl~~~a~pi--~gt~A~~YL~~~RGI~~--~~~~~LrfhP~~y~~~~~~~~Paliapv~D~~G~i~gv~rt~L~p~~g 1747 (1960)
T TIGR02760 1672 AKSLFQGSQEL--KGTLAEKYLKQHRGLAS--IDNDDIRFHPTVYSSDKKNKHPALIAAARNEKGEITGIQITYLDKDDA 1747 (1960)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHhcCCCCC--CCccceEECcccccCCCCCcCCeEEEEEECCCCCEEEEEEEEccCCCC
Confidence 55677766432 135688999 8999976 2444444332 1 24689999987 899999999998742
Q ss_pred ---cccccC-----CCCCccccccccCCCCcEEEEechhhHHHHHHhCC--CceEEcCCCCCCCCCCCCCCChhhhhhhH
Q 009230 103 ---KFWQEK-----DTEKVFYGLDDIEGESDIIIVEGEMDKLSMEEAGF--LNCVSVPDGAPSSVSKKNVPSEEQDTKYQ 172 (539)
Q Consensus 103 ---~~~~~~-----~~~~~l~g~~~~~~~~~v~i~EG~~Dalsl~~~g~--~~~v~l~~g~~~~~~~~~l~~~~~~~~~~ 172 (539)
++...+ .....+++++....++.++|+||..|+||+++++. .+++++ .|+.+....
T Consensus 1748 ~~~k~l~~~kr~~G~k~g~~v~l~~~~~~~~liiaEGiEtaLS~~~a~~~~~~vvA~-lg~~~l~~i------------- 1813 (1960)
T TIGR02760 1748 NKDKDMDNNKRVKGSISGQFVVINKGMQGDRSYIAEGIETGLSIALANPKATVVIAV-GGKNNLSPI------------- 1813 (1960)
T ss_pred CCCccCCCcccccccccCcEEEecCCCCCCeEEEEcCHHHHHHHHHhCCCCccEEEE-CCccccccc-------------
Confidence 232221 22333445544444578999999999999999975 445554 344332110
Q ss_pred HHHhHHHHhc-cCCEEEEEecCCc--c-chHHHHHHHHHhcC--CceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHH
Q 009230 173 YLWNCKMYLK-QASRIILATDGDP--P-GQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVV 246 (539)
Q Consensus 173 ~l~~~~~~l~-~~~~ivl~~DnD~--~-G~~~~~~~~~~l~~--~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~ 246 (539)
.+. ..++||||.|||. + |+.++.++++++.. ..+.++ +| + ||||. |.+++.+.+
T Consensus 1814 -------~~~~~~~~viI~~D~D~~~a~G~~Aa~k~~~~l~~~G~~v~i~-~P------~--Dfnd~----g~~~~~~~l 1873 (1960)
T TIGR02760 1814 -------IPKFIPKNVVIVLDNDGEEAKSQRAIEKIINKFKQDNISARIV-FP------D--DWNDI----GEEELQKQL 1873 (1960)
T ss_pred -------cCCCCCceEEEEeCCCCcccchHHHHHHHHHHHHhCCCeeEEe-CC------c--hhhhh----hHHHHHHHH
Confidence 011 1379999999994 5 99999999999843 345545 56 2 88888 456677776
Q ss_pred Hhcc
Q 009230 247 ENAE 250 (539)
Q Consensus 247 ~~A~ 250 (539)
..+.
T Consensus 1874 ~~~~ 1877 (1960)
T TIGR02760 1874 MRAI 1877 (1960)
T ss_pred HHhh
Confidence 6554
No 81
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=99.14 E-value=2.1e-10 Score=89.81 Aligned_cols=68 Identities=32% Similarity=0.439 Sum_probs=52.7
Q ss_pred CcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccC-CEEEEEecCCccchHHHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAE 202 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~-~~ivl~~DnD~~G~~~~~ 202 (539)
++++||||++|++|+++.|..+++++. |+.+. + ..+..+.+. ++|++|+|||.+|+++++
T Consensus 1 ~~v~i~EG~~Dals~~~~~~~~~~~~~-g~~~~------~------------~~~~~l~~~~~~vii~~D~D~~G~~~~~ 61 (79)
T cd01029 1 DEVIIVEGYMDVLALHQAGIKNVVAAL-GTANT------E------------EQLRLLKRFARTVILAFDNDEAGKKAAA 61 (79)
T ss_pred CEEEEEeCHHHHHHHHHcCCCCEEECC-CccCc------H------------HHHHHHHhcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999999987677753 55431 0 113445554 999999999999999999
Q ss_pred HHHHHhcC
Q 009230 203 ELARRVGR 210 (539)
Q Consensus 203 ~~~~~l~~ 210 (539)
++.+.+..
T Consensus 62 ~~~~~~~~ 69 (79)
T cd01029 62 RALELLLA 69 (79)
T ss_pred HHHHHHHH
Confidence 99888854
No 82
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=99.12 E-value=9.8e-10 Score=107.22 Aligned_cols=204 Identities=11% Similarity=0.087 Sum_probs=129.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 373 (539)
-..|...+|-|.||+|||+|++.++..+.. ..+|+|+|.-.++..+..........++ ...+-.
T Consensus 7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~~--~~~v~YISTRVd~d~vy~~y~~~~~~i~--------------~~~vlD 70 (484)
T PF07088_consen 7 QEPGQTLLIKGEPGTGKTTFALELLNSLKD--HGNVMYISTRVDQDTVYEMYPWIEESID--------------PTNVLD 70 (484)
T ss_pred CCCCcEEEEecCCCCCceeeehhhHHHHhc--cCCeEEEEeccCHHHHHHhhhhhccccC--------------hhhhhh
Confidence 467899999999999999999999977765 5799999999888876554422222221 111111
Q ss_pred H-HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Q 009230 374 G-KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452 (539)
Q Consensus 374 ~-~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i 452 (539)
+ .+.+.- .... ..+.....++.+.+.+++........+|++||+-.++..-....+..+.+..+...|-.||+..++
T Consensus 71 atQd~~~~-~~~~-~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~ 148 (484)
T PF07088_consen 71 ATQDPFEL-PLDK-DVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGI 148 (484)
T ss_pred hccchhhc-cccc-cCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCc
Confidence 1 000000 0000 001223457777777775433345678999997776652211123334467788888899999999
Q ss_pred EEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCC
Q 009230 453 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVT 532 (539)
Q Consensus 453 ~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~ 532 (539)
++|+++...+.. .+++.+|-|+.|+-..+ +++ ...+.|.+.|.|-=..+.. .+.|--..
T Consensus 149 ~LIlVsEsa~~~----------------~LdYivDGVVTL~v~~d-erG-R~~R~L~LeKLRGV~I~q~---~Y~fTL~n 207 (484)
T PF07088_consen 149 NLILVSESAENE----------------PLDYIVDGVVTLQVKND-ERG-RTRRYLRLEKLRGVRIKQR---LYPFTLAN 207 (484)
T ss_pred eEEEEEecCCCC----------------cchheeeeEEEEEeccc-cCC-ceEEEEEehhhcCcccCCc---cceEEeeC
Confidence 999998854432 38899999999953333 322 3357899999986555542 23366666
Q ss_pred ceec
Q 009230 533 GEYM 536 (539)
Q Consensus 533 ~rf~ 536 (539)
|||.
T Consensus 208 GrF~ 211 (484)
T PF07088_consen 208 GRFR 211 (484)
T ss_pred CEEE
Confidence 6664
No 83
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=98.79 E-value=1.8e-08 Score=78.05 Aligned_cols=68 Identities=38% Similarity=0.498 Sum_probs=48.3
Q ss_pred CcEEEEechhhHHHHHHhCCC--ceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc-C--CEEEEEecCCccch
Q 009230 124 SDIIIVEGEMDKLSMEEAGFL--NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-A--SRIILATDGDPPGQ 198 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~--~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~-~--~~ivl~~DnD~~G~ 198 (539)
++++||||++|++++++++.. .++++ .|... +. . .+..+++ . .+|+||+|+|.+|+
T Consensus 1 ~~l~ivEg~~da~~~~~~~~~~~~~~~~-~G~~~-------~~-------~----~~~~l~~~~~~~~Iii~~D~D~~G~ 61 (76)
T smart00493 1 KVLIIVEGPADAIALEKAGGFGGNVVAL-GGHLL-------KK-------E----IIKLLKRLAKKKEVILATDPDREGE 61 (76)
T ss_pred CEEEEEcCHHHHHHHHHhcCCCEEEEEE-eeeec-------HH-------H----HHHHHHHHhcCCEEEEEcCCChhHH
Confidence 468999999999999999984 33443 23321 00 0 1122322 1 68999999999999
Q ss_pred HHHHHHHHHhcC
Q 009230 199 ALAEELARRVGR 210 (539)
Q Consensus 199 ~~~~~~~~~l~~ 210 (539)
++++++.+.+..
T Consensus 62 ~~~~~i~~~l~~ 73 (76)
T smart00493 62 AIAWKLAELLKP 73 (76)
T ss_pred HHHHHHHHHhhh
Confidence 999999998854
No 84
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=98.78 E-value=5.9e-08 Score=82.67 Aligned_cols=112 Identities=17% Similarity=0.244 Sum_probs=73.8
Q ss_pred CCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhc-cCCEEEEEecCCcc-----
Q 009230 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLK-QASRIILATDGDPP----- 196 (539)
Q Consensus 123 ~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~-~~~~ivl~~DnD~~----- 196 (539)
.-+|+||||++-|.|+.++|+. +++||+ -.+......... . ......|...+..+. +.++|++|||.|..
T Consensus 10 ~~pi~ItEG~kKA~al~s~G~~-aIalpG-V~~~~~~~~~~~-~-~~~~~~L~p~L~~~~~~gr~v~iaFD~D~~~~Tn~ 85 (130)
T PF12965_consen 10 NIPIWITEGAKKAGALLSQGYP-AIALPG-VNNGYRWPKDEG-D-KIGKRRLIPELAKLAKPGREVYIAFDADTKPKTNK 85 (130)
T ss_pred CccEEEEechHHHHHHHcCCce-EEEeCc-eecccccccccc-c-cccchhcchhHHHhccCCceEEEEecCCCccchhH
Confidence 5689999999999999999987 799884 333221100000 0 001113344454553 57899999999932
Q ss_pred -chHHHHHHHHHhcC--CceEEEecCCCCCCCCCCChHHHHHhcCcchH
Q 009230 197 -GQALAEELARRVGR--ERCWRVRWPKKNDVDHFKDANEVLMYLGPGAL 242 (539)
Q Consensus 197 -G~~~~~~~~~~l~~--~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~ 242 (539)
=.++.+++.+.|.. ..++++.||. ...|-++|+|.++|+++|
T Consensus 86 ~V~~a~~~l~~~L~~~G~~v~~~~w~~----~~~KGiDD~l~~~G~~~f 130 (130)
T PF12965_consen 86 NVRRAIKRLGKLLKEAGCKVKIITWPP----GEGKGIDDLLAAKGPDAF 130 (130)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEeCC----CCCCCHhHHHHhcCcccC
Confidence 23556677777743 3467888884 468999999999987753
No 85
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=98.60 E-value=2e-07 Score=72.52 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=52.7
Q ss_pred CcEEEEechhhHHHHHHhCC-CceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGF-LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALA 201 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~-~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~ 201 (539)
+.++||||..|+.+++++|+ .++++. +|+.. +. .+.+.+.+ .++|++++|+|.+|++++
T Consensus 2 ~~vIiVEG~~D~~~l~~~g~~~~~i~t-~Gt~~-------~~-----------~~~~~l~~~~~~VIiltD~D~aG~~i~ 62 (81)
T cd01027 2 GEVIIVEGKNDTESLKKLGIEAEIIET-NGSII-------NK-----------ETIELIKKAYRGVIILTDPDRKGEKIR 62 (81)
T ss_pred CeEEEEEchHHHHHHHHhCCCccEEEE-CCCcC-------CH-----------HHHHHHHHhCCEEEEEECCCHHHHHHH
Confidence 46899999999999999998 777775 35432 11 11233443 689999999999999999
Q ss_pred HHHHHHhcC
Q 009230 202 EELARRVGR 210 (539)
Q Consensus 202 ~~~~~~l~~ 210 (539)
.++.+.|..
T Consensus 63 ~~~~~~l~~ 71 (81)
T cd01027 63 KKLSEYLSG 71 (81)
T ss_pred HHHHHHhcc
Confidence 999999854
No 86
>PRK04031 DNA primase; Provisional
Probab=98.58 E-value=2.3e-07 Score=91.79 Aligned_cols=98 Identities=27% Similarity=0.396 Sum_probs=74.4
Q ss_pred CCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHHH
Q 009230 122 GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALA 201 (539)
Q Consensus 122 ~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~~ 201 (539)
..+.++||||.+|+++|+++|+.|+|++. |+. ++.. ...|.+-++|++|+|+|.+|+.+.
T Consensus 168 k~~~iIVVEG~~DVi~L~~aGi~nvVAt~-GT~-------l~~~------------i~~l~k~~~Vil~~DgD~aGe~I~ 227 (408)
T PRK04031 168 DSDAIIVVEGRADVLNLLRYGIKNAIAVE-GTN-------VPET------------IIELSKKKTVTAFLDGDRGGELIL 227 (408)
T ss_pred cCCeEEEEeCHHHHHHHHhcccceEEEeC-Ccc-------cHHH------------HHHHhcCCCEEEEECCCHHHHHHH
Confidence 45789999999999999999999999963 553 2211 223334689999999999999988
Q ss_pred HHHHHHhcCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHHhccc
Q 009230 202 EELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251 (539)
Q Consensus 202 ~~~~~~l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~~A~~ 251 (539)
+.+.+ . ....++.+.| .++|+.++ ..+++.+++.++.+
T Consensus 228 k~l~~-v-~~~d~VaraP------~G~dVE~l----s~eeI~kAL~~~~p 265 (408)
T PRK04031 228 KELLQ-V-ADIDYVARAP------PGKEVEEL----TKKEIAKALRNKVP 265 (408)
T ss_pred HHHHh-h-cceeEEecCC------CCCChhhC----CHHHHHHHHHhcCC
Confidence 88876 3 2345777777 34888888 46788888887765
No 87
>PRK04296 thymidine kinase; Provisional
Probab=98.58 E-value=3.9e-07 Score=84.11 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC--CCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM--ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~--E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 374 (539)
|.+++++|++|+||||++++++..++.. |.+|+++.. +.... ..++ ....|++...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-g~~v~i~k~~~d~~~~--~~~i-~~~lg~~~~~------------------ 59 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-GMKVLVFKPAIDDRYG--EGKV-VSRIGLSREA------------------ 59 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-CCeEEEEecccccccc--CCcE-ecCCCCcccc------------------
Confidence 7899999999999999999999998875 999999943 33211 1111 1111221100
Q ss_pred HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 009230 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454 (539)
Q Consensus 375 ~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~v 454 (539)
+.+ ...+++...+.. ...++++||||... ++. + + ++ ..|-+.++..+++|
T Consensus 60 --------~~~-------~~~~~~~~~~~~--~~~~~dvviIDEaq-~l~-------~-~---~v-~~l~~~l~~~g~~v 109 (190)
T PRK04296 60 --------IPV-------SSDTDIFELIEE--EGEKIDCVLIDEAQ-FLD-------K-E---QV-VQLAEVLDDLGIPV 109 (190)
T ss_pred --------eEe-------CChHHHHHHHHh--hCCCCCEEEEEccc-cCC-------H-H---HH-HHHHHHHHHcCCeE
Confidence 001 123445544443 34568999999663 221 1 1 12 33445556899999
Q ss_pred EEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 455 i~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+++.....-.+ .-+.++..+...||.|+.|...-
T Consensus 110 i~tgl~~~~~~--------~~f~~~~~L~~~aD~V~~l~~vC 143 (190)
T PRK04296 110 ICYGLDTDFRG--------EPFEGSPYLLALADKVTELKAIC 143 (190)
T ss_pred EEEecCccccc--------CcCchHHHHHHhcCeEEEeeEEc
Confidence 99877433221 11335567888999999998754
No 88
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.54 E-value=8.5e-07 Score=84.21 Aligned_cols=174 Identities=19% Similarity=0.158 Sum_probs=99.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHH--HHhhCCCc-------
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLL--EKHIKKPF------- 354 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~--~~~~~~~~------- 354 (539)
|+.+.- +++|+++.|.||.|+||||++..++.-..-. ...|.+-.- +++..++++++. .+....++
T Consensus 18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~-~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~ 96 (258)
T COG1120 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYEL 96 (258)
T ss_pred EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeeh
Confidence 444444 8999999999999999999998877554432 334443321 255666666541 11111110
Q ss_pred ---cccccCCCCCCCCHHHHHHHHHHh--------hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccc
Q 009230 355 ---FEANYGGSAERMTVEEFEQGKAWL--------SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 355 ---~~i~~~~~~~~l~~~~~~~~~~~l--------~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
.+..+-+.....+.++.+.+.+.+ .++.+- +-+..-.+....++.++ .+++++++|.=+.-
T Consensus 97 V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGerQrv~iArALa--Q~~~iLLLDEPTs~- 168 (258)
T COG1120 97 VLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGERQRVLIARALA--QETPILLLDEPTSH- 168 (258)
T ss_pred HhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhHHHHHHHHHHHh--cCCCEEEeCCCccc-
Confidence 111111122345666554443322 222211 11112222333333333 47899999933322
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
.+ -..+-++++-+++++++.|.+||++.| ..- -...||.+++|...+
T Consensus 169 ------LD-i~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-------------------A~ryad~~i~lk~G~ 216 (258)
T COG1120 169 ------LD-IAHQIEVLELLRDLNREKGLTVVMVLHDLNL-------------------AARYADHLILLKDGK 216 (258)
T ss_pred ------cC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-------------------HHHhCCEEEEEECCe
Confidence 22 234568999999999999999999999 321 236899999998654
No 89
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=98.44 E-value=1.5e-07 Score=80.51 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCHHHHHHcCcccccCC-----------------------------------ceeEEEEeEe-eCCEEE
Q 009230 50 NELRAYFAERLISAETLRRNRVMQKRHG-----------------------------------HEVVIAFPYW-RNGKLV 93 (539)
Q Consensus 50 ~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~-----------------------------------~~~~i~fP~~-~~G~~~ 93 (539)
.++++||.+|||++++++.|++++...+ -.++|+||+. ..|+||
T Consensus 12 ~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~~l~~~l~~~~~~~~~l~~~GL~~~~~~~~~~d~F~~RiifPI~d~~G~vv 91 (128)
T PF08275_consen 12 KEALEYLKKRGLSDETIKKFQLGYAPGNWDSLLEYLKKKGFSLEELLEAGLIRKNENGGYYDFFRGRIIFPIRDERGRVV 91 (128)
T ss_dssp HHHHHHHHHTT--HHHHHHTT-EEE-SCSCHHHHHHCCCCHHHHHHCCTTCEECCTTTEEEETTTTEEEEEEE-TTS-EE
T ss_pred HHHHHHHHHcCCCHHHHHHhCCCcccCcHHHHHHHHHhccccHHHHHHCCCcEEcCCCCcccccCCeEEEEEEcCCCCEE
Confidence 4589999999999999999988543321 1479999988 889999
Q ss_pred EEEeecC----CCcccccC-----CCCCcccccccc
Q 009230 94 NCKYRDF----NKKFWQEK-----DTEKVFYGLDDI 120 (539)
Q Consensus 94 ~~~~R~~----~~~~~~~~-----~~~~~l~g~~~~ 120 (539)
++.+|.+ .+||.+++ .++..|||++.+
T Consensus 92 gF~gR~l~~~~~pKYlNs~et~if~K~~~Lyg~~~A 127 (128)
T PF08275_consen 92 GFGGRRLDDENPPKYLNSPETPIFKKSRILYGLDQA 127 (128)
T ss_dssp EEEEEESSSSSS-SEEE---BTTB-GGG-EETHHHH
T ss_pred EEecccCCCCCCCceECCCCCccccCCceecCcccc
Confidence 9999999 36888865 456778887653
No 90
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=98.42 E-value=3.5e-06 Score=82.65 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=97.7
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
...--++||...||++++ +..|+++.|.|+||+|||.|++.++... ..-...++|+..|.. .++ .|+.......-
T Consensus 88 ~~~~~l~Tg~~~lD~lL~gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~-~gge~~~l~IDs~s~-~~~-~~~~~ia~~~~ 164 (326)
T KOG1433|consen 88 SELGFLSTGSKALDKLLGGGIETGSLTELVGPPGSGKTQLCHTLAVTC-GGGEGKVLYIDTEST-FRL-ERLTEIAGRSG 164 (326)
T ss_pred ccceeeccchhhhhHhhccCcccCceeEEecCCCccHHHHHHHHHHhc-cCCcceEEEEecchh-ccc-chhhhhhhhhh
Confidence 444568999999999996 9999999999999999999998777654 222578999999974 211 12211110000
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCC---
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ--- 430 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~--- 430 (539)
+...+ ..+.+.-.-. +.+ +. .+. ....+.....+....++++|+...+....-.+.
T Consensus 165 ------------~~~~~---~~~~l~~~~~-~~~--~~--~l~-~~~~a~~~~~~~~~~l~~vds~ta~~~~~~~g~~~~ 223 (326)
T KOG1433|consen 165 ------------LRGRD---TLSNLMLARA-YNL--DH--QLQ-LIQEAEIMINQSRVKLLIVDSATALYRTTFKGRGEL 223 (326)
T ss_pred ------------hhhHH---HHHHHHHHHH-Hhh--HH--HHH-HHHHHHHHhhccceeEEEecccccccccccccccch
Confidence 00000 0001100000 000 00 011 111122223334578999999988875432221
Q ss_pred -CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCC
Q 009230 431 -TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLH 464 (539)
Q Consensus 431 -~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~ 464 (539)
....-+...++.|++++++++++||+..| .+..+
T Consensus 224 ~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d 259 (326)
T KOG1433|consen 224 SARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVD 259 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEecccccccc
Confidence 11223456889999999999999999988 54443
No 91
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.32 E-value=3.5e-06 Score=75.83 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH-HHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHARKL 345 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~-~~~~~r~ 345 (539)
+++|.|++|+|||+|+.+++.. .+.+++|++.+.+. .++..|+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI 44 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERI 44 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHH
Confidence 4789999999999999999865 37899999888663 3344444
No 92
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=4.2e-06 Score=72.15 Aligned_cols=117 Identities=24% Similarity=0.339 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc----CCeEEEEeCC--CCHHHHHHHHHHHhhCCCccccccCCCCCCCCHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA----GWKFVLCSME--NKVREHARKLLEKHIKKPFFEANYGGSAERMTVE 369 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~----g~~vl~~s~E--~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~ 369 (539)
.+.+++|.|+||+|||+++.+++....... ..+++++.+. .+...+...+... .+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-l~~~~--------------- 66 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEA-LGLPL--------------- 66 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHH-HT-SS---------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHH-hCccc---------------
Confidence 457899999999999999999998876521 5677777654 2234444444322 11110
Q ss_pred HHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 370 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
....+.+++.+.+.....+.+..+||||.+..+. . ..++..|+.++.+
T Consensus 67 --------------------~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~----------~~~l~~l~~l~~~ 114 (131)
T PF13401_consen 67 --------------------KSRQTSDELRSLLIDALDRRRVVLLVIDEADHLF--S----------DEFLEFLRSLLNE 114 (131)
T ss_dssp --------------------SSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHH--T----------HHHHHHHHHHTCS
T ss_pred --------------------cccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcC--C----------HHHHHHHHHHHhC
Confidence 1123566777777777777777899999777653 0 4677888888889
Q ss_pred hCcEEEEEecC
Q 009230 450 HACHVWFVAHP 460 (539)
Q Consensus 450 ~~i~vi~~~q~ 460 (539)
.++++|++.++
T Consensus 115 ~~~~vvl~G~~ 125 (131)
T PF13401_consen 115 SNIKVVLVGTP 125 (131)
T ss_dssp CBEEEEEEESS
T ss_pred CCCeEEEEECh
Confidence 99999999884
No 93
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.29 E-value=2.8e-05 Score=67.72 Aligned_cols=176 Identities=16% Similarity=0.179 Sum_probs=97.9
Q ss_pred cCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC----CCHHHHHHHHHHHhhCCCc---
Q 009230 283 TGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPF--- 354 (539)
Q Consensus 283 tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E----~~~~~~~~r~~~~~~~~~~--- 354 (539)
++-+-||.+.- +++||.+.|+||+|+|||||+.++|.-+.- .-.+++|-.| ..++....+.... ...+-
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp--~~G~l~f~Ge~vs~~~pea~Rq~VsY~-~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP--TSGTLLFEGEDVSTLKPEAYRQQVSYC-AQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC--CCceEEEcCccccccChHHHHHHHHHH-HcCccccc
Confidence 34455665554 999999999999999999999998865554 4556777776 4466666665322 22210
Q ss_pred ----------cccccCCCCCCCCHHHHHHHHHHhhccceeE-eec-CCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccc
Q 009230 355 ----------FEANYGGSAERMTVEEFEQGKAWLSNTFSLI-RCE-NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422 (539)
Q Consensus 355 ----------~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i-~~~-~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l 422 (539)
..++. .+.+..........+. .+.++ ... .+-+..-.+.++.++.+ ++.++++.+|..+..
T Consensus 91 ~tVeDNlifP~~~r~----rr~dr~aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsA 163 (223)
T COG4619 91 DTVEDNLIFPWQIRN----RRPDRAAALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSA 163 (223)
T ss_pred cchhhccccchHHhc----cCCChHHHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhh
Confidence 01111 1222222222111111 11111 000 01111223455555554 478999999977665
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 423 DHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+.. +....++++ +..+.++-++.|+-++|.... -.++||.+|.+..
T Consensus 164 LD~-----~nkr~ie~m---i~~~v~~q~vAv~WiTHd~dq------------------a~rha~k~itl~~ 209 (223)
T COG4619 164 LDE-----SNKRNIEEM---IHRYVREQNVAVLWITHDKDQ------------------AIRHADKVITLQP 209 (223)
T ss_pred cCh-----hhHHHHHHH---HHHHhhhhceEEEEEecChHH------------------HhhhhheEEEecc
Confidence 532 222344444 344455889999999994322 1357788887764
No 94
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=9.9e-06 Score=72.38 Aligned_cols=155 Identities=18% Similarity=0.197 Sum_probs=88.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHhhC---C--------
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIK---K-------- 352 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~~~~~~~---~-------- 352 (539)
+|++.- +++|.+|-|.||.|+||||++.-++.-+... ...|.+=..|++ ..++++++ +.+-. +
T Consensus 17 l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d-~G~i~i~g~~~~~~~s~~LAk~l-SILkQ~N~i~~rlTV~d 94 (252)
T COG4604 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD-SGEITIDGLELTSTPSKELAKKL-SILKQENHINSRLTVRD 94 (252)
T ss_pred eccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc-CceEEEeeeecccCChHHHHHHH-HHHHhhchhhheeEHHH
Confidence 444444 9999999999999999999988776555443 456666666654 34555554 22111 1
Q ss_pred --CccccccCCCCCCCCHHHHHHHHHHhhc---c---ceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc
Q 009230 353 --PFFEANYGGSAERMTVEEFEQGKAWLSN---T---FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424 (539)
Q Consensus 353 --~~~~i~~~~~~~~l~~~~~~~~~~~l~~---~---~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~ 424 (539)
.+.++.+ +.++++.+++..+.+.+.- . --|+. +-.+.......+ .++...+.+.|++|.=+.
T Consensus 95 Lv~FGRfPY--SqGRlt~eD~~~I~~aieyl~L~~l~dryLd-~LSGGQrQRAfI----AMVlaQdTdyvlLDEPLN--- 164 (252)
T COG4604 95 LVGFGRFPY--SQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-ELSGGQRQRAFI----AMVLAQDTDYVLLDEPLN--- 164 (252)
T ss_pred HhhcCCCcc--cCCCCchHHHHHHHHHHHHhcccchHHHhHH-hcccchhhhhhh----heeeeccCcEEEecCccc---
Confidence 1222222 2457888876654433321 0 01110 001111111111 122335678999982211
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
..+ -..--++|+.|+++|.++|-+|++|-|
T Consensus 165 ----NLD-mkHsv~iMk~Lrrla~el~KtiviVlH 194 (252)
T COG4604 165 ----NLD-MKHSVQIMKILRRLADELGKTIVVVLH 194 (252)
T ss_pred ----ccc-hHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 111 122347999999999999999999999
No 95
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=5.6e-06 Score=78.30 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=92.0
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC---------------CeEEEEeC----C----CCHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAG---------------WKFVLCSM----E----NKVREH 341 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g---------------~~vl~~s~----E----~~~~~~ 341 (539)
+.|+++.- +.+|+++.|.||.|+|||||+.-++--+--..| .++.|+.= + .+.+++
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~ 97 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV 97 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHH
Confidence 35666655 999999999999999999998776532211111 24555421 1 122222
Q ss_pred HHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhc--------cceeEeecCCCCCCHHHHHHHHHHHHHHcCCcE
Q 009230 342 ARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN--------TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRG 413 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~--------~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 413 (539)
+.+ |. ....+....++.++.+++.+.|.. +.+-- =.+......+++ +. -..++++
T Consensus 98 ----V~~--g~----~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~---LSGGQ~QRV~lA--RA--L~~~p~l 160 (254)
T COG1121 98 ----VLL--GR----YGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE---LSGGQKQRVLLA--RA--LAQNPDL 160 (254)
T ss_pred ----HHc--cC----cccccccccccHHHHHHHHHHHHHcCchhhhCCcccc---cCcHHHHHHHHH--HH--hccCCCE
Confidence 211 11 011112234565665555444432 21110 011111112222 22 2357999
Q ss_pred EEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEE
Q 009230 414 LVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493 (539)
Q Consensus 414 vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~ 493 (539)
+++|-=.+ +-+ ......+++-|+.+.++ |++|++++|.=. ...+.+|.|+.|.
T Consensus 161 llLDEP~~-------gvD-~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~------------------~v~~~~D~vi~Ln 213 (254)
T COG1121 161 LLLDEPFT-------GVD-VAGQKEIYDLLKELRQE-GKTVLMVTHDLG------------------LVMAYFDRVICLN 213 (254)
T ss_pred EEecCCcc-------cCC-HHHHHHHHHHHHHHHHC-CCEEEEEeCCcH------------------HhHhhCCEEEEEc
Confidence 99992221 112 23346788899999999 999999999311 2456899999998
Q ss_pred eCC
Q 009230 494 RNR 496 (539)
Q Consensus 494 r~~ 496 (539)
+.-
T Consensus 214 ~~~ 216 (254)
T COG1121 214 RHL 216 (254)
T ss_pred Cee
Confidence 743
No 96
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=3.9e-06 Score=80.17 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=91.7
Q ss_pred eEEEEeEeeCCEEEEEEeecC--CCcccccCCCCCcccccccc-CCCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCC
Q 009230 80 VVIAFPYWRNGKLVNCKYRDF--NKKFWQEKDTEKVFYGLDDI-EGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSS 156 (539)
Q Consensus 80 ~~i~fP~~~~G~~~~~~~R~~--~~~~~~~~~~~~~l~g~~~~-~~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~ 156 (539)
..++.+.+.+|++.+.++-.. .|+|..++..+...+.+... ....++||+||...++++.|+-...++ ....+.|
T Consensus 160 ~slip~~d~~Gel~~lq~I~~dG~Krf~~Ggr~kg~f~p~~g~~~~aa~lvi~EGyATal~i~~~~ga~v~-aAi~agN- 237 (366)
T COG4643 160 GSLIPLRDADGELTGLQLIQPDGTKRFLKGGRVKGCFIPLGGLAGPAARLVIAEGYATALSISQATGAPVA-AAIDAGN- 237 (366)
T ss_pred cceEEEEcCCCCEeeeEEEcCCccceeccCCcccceeeecCCCcccccceEEeechhHHHHHHHHhhhhHH-hhhhccc-
Confidence 356644669999999887655 68888766555444444322 235679999999999999998643222 2233333
Q ss_pred CCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCc-----cchHHHHHHHHHhcCCceEEEecCCCCCCCCCCChH
Q 009230 157 VSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP-----PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDAN 231 (539)
Q Consensus 157 ~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~-----~G~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~kD~n 231 (539)
|.....+.+ ..+ +..+||||.|+|. +|...+++.+...... +.+|.. ..-||+
T Consensus 238 -----ll~VA~al~--------~~~-Pda~iIIaAD~D~~~~nnpG~t~A~eaA~Avng~----~~lP~~----~~adwp 295 (366)
T COG4643 238 -----LLAVASALR--------KKF-PDAQIIIAADDDINTANNPGLTKAEEAAQAVNGT----VALPPF----GPADWP 295 (366)
T ss_pred -----HHHHHHHHH--------HhC-CCcceEEEeccccccCCCcchHHHHHHHHhhCce----eecCCC----CCCcCc
Confidence 111211111 112 3468999999997 7999999998877542 444521 226899
Q ss_pred HHHHhcCcchHHHHHH
Q 009230 232 EVLMYLGPGALKEVVE 247 (539)
Q Consensus 232 d~l~~~g~~~~~~~~~ 247 (539)
|+....+..+.+..+.
T Consensus 296 D~~tq~n~la~r~~~~ 311 (366)
T COG4643 296 DGFTQFNDLATRCAFG 311 (366)
T ss_pred chhhhcchhhhhhhhc
Confidence 9988876655555444
No 97
>PF13479 AAA_24: AAA domain
Probab=98.15 E-value=2.8e-05 Score=73.16 Aligned_cols=146 Identities=16% Similarity=0.102 Sum_probs=81.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHh
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWL 378 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l 378 (539)
-++|.|+||+|||+|+..+ .+++|+++|-....+...- +.+.-.
T Consensus 5 ~~lIyG~~G~GKTt~a~~~---------~k~l~id~E~g~~~~~~~~-----~~~~i~---------------------- 48 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL---------PKPLFIDTENGSDSLKFLD-----DGDVIP---------------------- 48 (213)
T ss_pred EEEEECCCCCCHHHHHHhC---------CCeEEEEeCCCccchhhhc-----CCCeeC----------------------
Confidence 5789999999999998765 5889999998744321000 111100
Q ss_pred hccceeEeecCCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccccccc-------------CC--C--CCCCHHHHHH-HH
Q 009230 379 SNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDH-------------QR--P--VSQTETEYVS-QM 439 (539)
Q Consensus 379 ~~~~~~i~~~~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~~~~l~~-------------~~--~--~~~~~~~~~~-~~ 439 (539)
+ .+.+++.+.+..+.. ..+.+.||||++..+.. .. + .....+..+. .+
T Consensus 49 ------i-------~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~ 115 (213)
T PF13479_consen 49 ------I-------TSWEDFLEALDELEEDEADYDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEF 115 (213)
T ss_pred ------c-------CCHHHHHHHHHHHHhccCCCCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHH
Confidence 0 034444444433322 34677777777766511 00 0 0123344443 34
Q ss_pred HHHHHHHHHHhCcEEEEEec-CCCCCCCCC----CCCCcccccccccchhccceEEEEEe
Q 009230 440 LTMVKRFAQHHACHVWFVAH-PRQLHNWVG----EPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 440 ~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~----~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
.+.++.+....+++||+++| -.......+ -.|.+.. +-...+...+|.|.-+..
T Consensus 116 ~~~i~~l~~~~~~~VI~tah~~~~~~~~~~~~~~~~~~l~~-k~~~~l~~~~D~V~~l~~ 174 (213)
T PF13479_consen 116 MRFIDKLLNALGKNVIFTAHAKEEEDEDGGKYTRYKPKLGK-KVRNELPGWFDVVGRLRV 174 (213)
T ss_pred HHHHHHHHHHCCCcEEEEEEEEEEEcCCCCceeEEeeccCh-hHHhhhhecccEEEEEEE
Confidence 55555566679999999999 322221111 1233322 334668889999976664
No 98
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.11 E-value=3.5e-05 Score=76.07 Aligned_cols=176 Identities=18% Similarity=0.181 Sum_probs=95.2
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH--HHHHHHHHHHhhCCCccccccCC
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV--REHARKLLEKHIKKPFFEANYGG 361 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~--~~~~~r~~~~~~~~~~~~i~~~~ 361 (539)
...|+.+-- +.+|+++.|.|++|+||||++.-++--.-- ....+.++..+... .++..++ +....-+.
T Consensus 18 ~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-~~G~i~i~G~~~~~~~~~~~~~i-gy~~~~~~------- 88 (293)
T COG1131 18 KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-TSGEILVLGYDVVKEPAKVRRRI-GYVPQEPS------- 88 (293)
T ss_pred CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-CceEEEEcCEeCccCHHHHHhhe-EEEccCCC-------
Confidence 345666666 999999999999999999997766644322 34566655544433 2233232 11111110
Q ss_pred CCCCCCHHHHHHHHHHhh---------------ccceeEe--ecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc
Q 009230 362 SAERMTVEEFEQGKAWLS---------------NTFSLIR--CENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424 (539)
Q Consensus 362 ~~~~l~~~~~~~~~~~l~---------------~~~~~i~--~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~ 424 (539)
..+.++..|.-+....+. +.+-+-. .......+...-....-..+--++|+++|+|.=
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEP----- 163 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEP----- 163 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCC-----
Confidence 112344443222211111 1000000 000011122111111112233467999999922
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
..+.+. ....++.+.|+.++++.+.+|++.+| .. .+++.||.|++|++-+
T Consensus 164 --t~GLDp-~~~~~~~~~l~~l~~~g~~tvlissH~l~-------------------e~~~~~d~v~il~~G~ 214 (293)
T COG1131 164 --TSGLDP-ESRREIWELLRELAKEGGVTILLSTHILE-------------------EAEELCDRVIILNDGK 214 (293)
T ss_pred --CcCCCH-HHHHHHHHHHHHHHhCCCcEEEEeCCcHH-------------------HHHHhCCEEEEEeCCE
Confidence 123333 34567899999999999999999999 42 2567799999998754
No 99
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.11 E-value=3.7e-05 Score=74.40 Aligned_cols=119 Identities=16% Similarity=0.122 Sum_probs=76.7
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 374 (539)
.+|.|+||.|||+++..+...-... ...||+++ +|++.--..++... +
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v--q~P~~p~~~~~Y~~-------------------------I 116 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV--QMPPEPDERRFYSA-------------------------I 116 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE--ecCCCCChHHHHHH-------------------------H
Confidence 6799999999999987766432111 01356555 33333222222211 1
Q ss_pred HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 009230 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454 (539)
Q Consensus 375 ~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~v 454 (539)
.+.+. .+ + ....+...+...+..+.+..+++++|||.+..++.+. ...+.+++..||.|+.++++|+
T Consensus 117 L~~lg-aP--~----~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs------~~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 117 LEALG-AP--Y----RPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS------YRKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred HHHhC-cc--c----CCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc------HHHHHHHHHHHHHHhhccCCCe
Confidence 11111 01 1 1333556667777778888999999999999887653 2346789999999999999999
Q ss_pred EEEe
Q 009230 455 WFVA 458 (539)
Q Consensus 455 i~~~ 458 (539)
|++-
T Consensus 184 V~vG 187 (302)
T PF05621_consen 184 VGVG 187 (302)
T ss_pred EEec
Confidence 9874
No 100
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.11 E-value=5e-05 Score=69.15 Aligned_cols=176 Identities=16% Similarity=0.155 Sum_probs=92.0
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc---ccC-
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA---NYG- 360 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i---~~~- 360 (539)
.-|+.+.- +.+|++++|.||||||||||+.-+ +.........+++..+......-.+.+....|+=++.+ .+-
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRcl--N~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlT 93 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCL--NGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLT 93 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHH--HCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccch
Confidence 33444443 999999999999999999998743 43333233445555532211101111222233322211 000
Q ss_pred ---------CCCCCCCHHHHH-HHHHHhhc-----cceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccC
Q 009230 361 ---------GSAERMTVEEFE-QGKAWLSN-----TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425 (539)
Q Consensus 361 ---------~~~~~l~~~~~~-~~~~~l~~-----~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~ 425 (539)
.....++.++.+ .+.+.|.. +...+ ...-+....+=.+.++.++ .+|+++..|--++.+
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~y--P~qLSGGQqQRVAIARALa--M~P~vmLFDEPTSAL-- 167 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAY--PAQLSGGQQQRVAIARALA--MDPKVMLFDEPTSAL-- 167 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhC--ccccCcHHHHHHHHHHHHc--CCCCEEeecCCcccC--
Confidence 000123433332 23333322 11111 0001111223333444433 478999999444322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 426 ~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+.+.+.+++.-++.||+ .|.+.++++| -+= ....||.|+++..-
T Consensus 168 ------DPElv~EVL~vm~~LA~-eGmTMivVTHEM~F-------------------Ar~VadrviFmd~G 212 (240)
T COG1126 168 ------DPELVGEVLDVMKDLAE-EGMTMIIVTHEMGF-------------------AREVADRVIFMDQG 212 (240)
T ss_pred ------CHHHHHHHHHHHHHHHH-cCCeEEEEechhHH-------------------HHHhhheEEEeeCC
Confidence 23567889999999997 5699999999 321 23588999999754
No 101
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.09 E-value=8.1e-05 Score=69.41 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=89.4
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCccccccC
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYG 360 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~~~i~~~ 360 (539)
...|+.+.- +.+||++.|.||||||||||+.-+. .+....+..|.+...+ ++..+. ..+-....|.=++...
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig-~ld~pt~G~v~i~g~d~~~l~~~~~-~~~R~~~iGfvFQ~~n-- 93 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLG-GLDKPTSGEVLINGKDLTKLSEKEL-AKLRRKKIGFVFQNFN-- 93 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHh-cccCCCCceEEECCEEcCcCCHHHH-HHHHHHhEEEECccCC--
Confidence 345555544 9999999999999999999966544 3333234455554423 333222 1111112222111100
Q ss_pred CCCCCCCHHH---------------HHHHHHHhhccc-e--eEeecCCCCCC--HHHHHHHHHHHHHHcCCcEEEEcccc
Q 009230 361 GSAERMTVEE---------------FEQGKAWLSNTF-S--LIRCENDSLPS--IKWVLDLAKAAVLRHGVRGLVIDPYN 420 (539)
Q Consensus 361 ~~~~~l~~~~---------------~~~~~~~l~~~~-~--~i~~~~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~~~ 420 (539)
-.+.++..| ..+....+.+.+ + ..........+ -.+=.+.++.++ .+|++|+-|-=+
T Consensus 94 -Ll~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~--~~P~iilADEPT 170 (226)
T COG1136 94 -LLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI--NNPKIILADEPT 170 (226)
T ss_pred -CCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh--cCCCeEEeeCcc
Confidence 011233222 111111111110 0 00000011111 122233333333 578999999222
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+.-+.+.-.+++.-|+.++++.|.+||+++|... +...||.+|.+..
T Consensus 171 --------gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~-------------------lA~~~dr~i~l~d 217 (226)
T COG1136 171 --------GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE-------------------LAKYADRVIELKD 217 (226)
T ss_pred --------ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-------------------HHHhCCEEEEEeC
Confidence 2222344567999999999999999999999322 3457888887763
No 102
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=98.07 E-value=9.8e-05 Score=66.77 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=94.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCCCH--HHHHHHHHHHhhCCCccccccCCCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENKV--REHARKLLEKHIKKPFFEANYGGSAERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~~~--~~~~~r~~~~~~~~~~~~i~~~~~~~~l 366 (539)
...|+++-|.||.|+|||.++.|++.+.... .++.|+|+.++-.- .++.+-+-..+...+..+..-. .--
T Consensus 35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~---~c~ 111 (293)
T KOG2859|consen 35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAA---KCP 111 (293)
T ss_pred cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhh---cCC
Confidence 5579999999999999999999999988763 25789999988543 2332222111111112111100 122
Q ss_pred CHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHH-cCCcEEEEccccccccCCC-CC----CCHHHHHHHHH
Q 009230 367 TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLR-HGVRGLVIDPYNELDHQRP-VS----QTETEYVSQML 440 (539)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~~~~l~~~~~-~~----~~~~~~~~~~~ 440 (539)
+++..+++...-..++.+++|. .+..+-.-.-.++.++.. .++-++++|++...---+. +. ......+..+.
T Consensus 112 te~~~eEi~~~Cm~Rf~~v~C~--~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~ 189 (293)
T KOG2859|consen 112 TEEQLEEIAGECMSRFRFVNCF--ASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQ 189 (293)
T ss_pred cHhHHHHHHHHHHhhEEEEEee--ccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHH
Confidence 3444456655555678888774 222221111223333333 3578999998876532211 11 11223456788
Q ss_pred HHHHHHHHHhCcEEEEEec
Q 009230 441 TMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 441 ~~Lk~lA~~~~i~vi~~~q 459 (539)
+.|+++.+.+-+.++.+.+
T Consensus 190 q~LeKL~~d~~lv~~aT~~ 208 (293)
T KOG2859|consen 190 QRLEKLCKDAILVGMATVE 208 (293)
T ss_pred HHHHHHHhhheeeeeeehh
Confidence 9999999988887777776
No 103
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.9e-05 Score=74.81 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=92.4
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC----CHHHHHHHHHHHhhCCC-------
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN----KVREHARKLLEKHIKKP------- 353 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~----~~~~~~~r~~~~~~~~~------- 353 (539)
+.|+.+.- +.+|+.++|.|++|+||||++..++-=+-- ....|.+..... +..++.++. .....-+
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-~~G~v~~~g~~~~~~~~~~~~~~~v-G~VfQnpd~q~~~~ 95 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-TSGEVLVDGLDTSSEKSLLELRQKV-GLVFQNPDDQLFGP 95 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-CCCEEEECCeeccchhhHHHhhcce-EEEEECcccccccC
Confidence 34444444 999999999999999999998876533222 233443222222 223332222 1000000
Q ss_pred --ccccccCCCCCCCCHHHHHHHHH-Hhh--------c-cceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccc
Q 009230 354 --FFEANYGGSAERMTVEEFEQGKA-WLS--------N-TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421 (539)
Q Consensus 354 --~~~i~~~~~~~~l~~~~~~~~~~-~l~--------~-~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~ 421 (539)
..++.++-....++.+++.+..+ .+. + .++.. .+.. .+..+.+- +-..+|+++++|-=+.
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L----SGGq--kqRvaIA~--vLa~~P~iliLDEPta 167 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNL----SGGQ--KQRVAIAG--VLAMGPEILLLDEPTA 167 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc----CCcc--eeeHHhhH--HHHcCCCEEEEcCCCC
Confidence 01122221122345555443221 111 1 11111 1111 11122221 2235799999993332
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
. . +.....++++.|+++..+.+.+||+++|.-. .+...||.++.+...+
T Consensus 168 ~-------L-D~~~~~~l~~~l~~L~~~~~~tii~~tHd~~------------------~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 168 G-------L-DPKGRRELLELLKKLKEEGGKTIIIVTHDLE------------------LVLEYADRVVVLDDGK 216 (235)
T ss_pred C-------C-CHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH------------------HHHhhCCEEEEEECCE
Confidence 2 2 2345678999999999999999999999322 1456899999997543
No 104
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.01 E-value=7.7e-05 Score=67.28 Aligned_cols=122 Identities=16% Similarity=0.226 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKA 376 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 376 (539)
.+++|.|+||+|||+|+.+++.. .+.+++|++...+ .+++..|+.......
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~----~~~~~~~iat~~~~~~e~~~ri~~h~~~R------------------------ 53 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ----SGLQVLYIATAQPFDDEMAARIAHHRQRR------------------------ 53 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH----cCCCcEeCcCCCCChHHHHHHHHHHHhcC------------------------
Confidence 46899999999999999988754 3667888877543 445555653322111
Q ss_pred HhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEE
Q 009230 377 WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWF 456 (539)
Q Consensus 377 ~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~ 456 (539)
...+..+ +...++..++ ... ..+.++|+||++..+....-...+ .......+..|...-++.++++|+
T Consensus 54 --~~~w~t~----E~~~~l~~~i---~~~--~~~~~~VlID~Lt~~~~n~l~~~~-~~~~~~~l~~li~~L~~~~~tvVl 121 (170)
T PRK05800 54 --PAHWQTV----EEPLDLAELL---RAD--AAPGRCVLVDCLTTWVTNLLFEEG-EEAIAAEIDALLAALQQLPAKIIL 121 (170)
T ss_pred --CCCCeEe----cccccHHHHH---Hhh--cCCCCEEEehhHHHHHHHHhcccc-hHHHHHHHHHHHHHHHcCCCCEEE
Confidence 0112222 2222333332 211 134679999998887542211011 012222333333333458899999
Q ss_pred Eec
Q 009230 457 VAH 459 (539)
Q Consensus 457 ~~q 459 (539)
++.
T Consensus 122 Vs~ 124 (170)
T PRK05800 122 VTN 124 (170)
T ss_pred EEc
Confidence 987
No 105
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.00 E-value=0.00024 Score=64.43 Aligned_cols=38 Identities=18% Similarity=0.344 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
++++.|+||+|||+++..++..++.. |.+|++++++.-
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~-g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK-GKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEEcCCC
Confidence 67899999999999999999998875 899999998864
No 106
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.99 E-value=0.00027 Score=65.38 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHhhCCCccc
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~~~~~~~~~~~~ 356 (539)
.++++.|++|+||||.+..+|.....+ +.+|.++|++-- +.+-+ +.++...++++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL-~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQL-KTYAEILGVPFYV 61 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHH-HHHHHHHTEEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHH-HHHHHHhccccch
Confidence 378999999999999999999999987 999999999844 22222 3345556666543
No 107
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=7.9e-05 Score=74.56 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=37.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+.+|.+++|.|++|+||||++..++..+..+ |.+|.+++.+-
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDt 244 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDT 244 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCc
Confidence 5678999999999999999999999887665 99999999873
No 108
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.98 E-value=0.00015 Score=67.88 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=82.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW 377 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~ 377 (539)
.+++|+|+||+||||++.+++ .++++++.+.+...+ .|.+...+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~--------~~~~~~~~d~~~~~l--------~g~~~~~v-------------------- 56 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP--------GKTLVLSFDMSSKVL--------IGDENVDI-------------------- 56 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC--------CCCEEEeccccchhc--------cCCCCCce--------------------
Confidence 579999999999999987652 367788888865533 11110000
Q ss_pred hhccceeEeecCCCCCCHHHHHHHHHHHH-HHcCCcEEEEcccccccc------CC--CC---CCCHHHHH-HHHHHHHH
Q 009230 378 LSNTFSLIRCENDSLPSIKWVLDLAKAAV-LRHGVRGLVIDPYNELDH------QR--PV---SQTETEYV-SQMLTMVK 444 (539)
Q Consensus 378 l~~~~~~i~~~~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~~~~l~~------~~--~~---~~~~~~~~-~~~~~~Lk 444 (539)
+.. +.....+.+.+.+..+. ...+++.||||++..+.. .. .. ....+..+ ..+++.|+
T Consensus 57 -------~~~--d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~ 127 (220)
T TIGR01618 57 -------ADH--DDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLT 127 (220)
T ss_pred -------eec--CCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHH
Confidence 000 11222333333333221 124578888888877643 11 11 11123333 34666666
Q ss_pred HHHHHhCcEEEEEec-C-CCCCCCCCCCCC--cccccc--cccchhccceEEEEEeCC
Q 009230 445 RFAQHHACHVWFVAH-P-RQLHNWVGEPPN--LYDISG--SAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 445 ~lA~~~~i~vi~~~q-~-r~~~~~~~~~~~--~~~l~g--s~~i~~~aD~vl~l~r~~ 496 (539)
.|. .++++||+++| . +......+...+ ..+|++ ...+.-.+|.|.-+....
T Consensus 128 ~L~-~~g~nII~tAhe~~~~~~de~G~~~~r~~P~i~~K~~n~l~G~~DvV~rl~i~~ 184 (220)
T TIGR01618 128 VLK-ESNKNIYATAWELTNQSSGESGQIYNRYQPDIREKVLNAFLGLTDVVGRIVLNG 184 (220)
T ss_pred HHH-hCCCcEEEEEeeccccccCCCCCCcceechhhhhhHHHhhcccccEEEEEEEcc
Confidence 664 49999999999 3 322221122111 123443 123666889999887444
No 109
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.98 E-value=4.5e-05 Score=65.92 Aligned_cols=44 Identities=27% Similarity=0.423 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
+..++|.|+||+|||+++..++..+... +..+++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEccccC
Confidence 5689999999999999999998877653 4479999998766543
No 110
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=97.96 E-value=2.9e-05 Score=60.42 Aligned_cols=69 Identities=32% Similarity=0.394 Sum_probs=47.0
Q ss_pred CcEEEEechhhHHHHHHhCCC--ceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGFL--NCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQAL 200 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~--~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~ 200 (539)
+.++||||+.|++++.+.+.. .++++. |..... + ...+..+.+ ..+|++++|+|.+|+..
T Consensus 1 ~~viivEg~~d~~~l~~~~~~~~~~~~~~-G~~~~~---------------~-~~~~~~~~~~~~~v~i~~D~D~~g~~~ 63 (83)
T cd00188 1 KKLIIVEGPSDALALAQAGGYGGAVVALG-GHALNK---------------T-RELLKRLLGEAKEVIIATDADREGEAI 63 (83)
T ss_pred CEEEEEecHHHHHHHHHHcCCCEEEEEEc-cEEcHH---------------H-HHHHHHHhcCCCEEEEEcCCChhHHHH
Confidence 368999999999999999874 455542 332200 0 011223333 48999999999999977
Q ss_pred HHHHHHHhc
Q 009230 201 AEELARRVG 209 (539)
Q Consensus 201 ~~~~~~~l~ 209 (539)
+..+.+.+.
T Consensus 64 ~~~~~~~~~ 72 (83)
T cd00188 64 ALRLLELLK 72 (83)
T ss_pred HHHHHHHHH
Confidence 777776664
No 111
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.95 E-value=8.9e-06 Score=75.40 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=48.5
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
..+++++.|--+..+ +...+.+++.-|..+.+++|.+.++++|+- +.+++.||.
T Consensus 158 ~~PklLIlDEptSaL--------D~siQa~IlnlL~~l~~~~~lt~l~IsHdl------------------~~v~~~cdR 211 (252)
T COG1124 158 PEPKLLILDEPTSAL--------DVSVQAQILNLLLELKKERGLTYLFISHDL------------------ALVEHMCDR 211 (252)
T ss_pred cCCCEEEecCchhhh--------cHHHHHHHHHHHHHHHHhcCceEEEEeCcH------------------HHHHHHhhh
Confidence 468999999444333 223467899999999999999999999942 236789999
Q ss_pred EEEEEeCC
Q 009230 489 GIVIHRNR 496 (539)
Q Consensus 489 vl~l~r~~ 496 (539)
++++.+..
T Consensus 212 i~Vm~~G~ 219 (252)
T COG1124 212 IAVMDNGQ 219 (252)
T ss_pred eeeeeCCe
Confidence 99998755
No 112
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.93 E-value=0.00014 Score=70.28 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=71.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-------CeEEEEeCCCCHHH----HHHHHHHHhhCCCccccccCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-------WKFVLCSMENKVRE----HARKLLEKHIKKPFFEANYGGS 362 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-------~~vl~~s~E~~~~~----~~~r~~~~~~~~~~~~i~~~~~ 362 (539)
+.+|+.+.|.|++|+|||||+.-++-...-..| ..+.|+.-+..... .....+. +.
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~---------~~---- 93 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLR---------LR---- 93 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHh---------cc----
Confidence 899999999999999999998877643221112 13444432211000 0001110 00
Q ss_pred CCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~ 442 (539)
.....+++..+.+.+.-. .+.. ......+-.+....+-..+...+++++++|.-+. +.+ ......+.+.
T Consensus 94 -~~~~~~~~~~~l~~~gl~-~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~-------~LD-~~~~~~l~~~ 162 (251)
T PRK09544 94 -PGTKKEDILPALKRVQAG-HLID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ-------GVD-VNGQVALYDL 162 (251)
T ss_pred -ccccHHHHHHHHHHcCCh-HHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc-------CCC-HHHHHHHHHH
Confidence 012223333332222100 0000 0011222232222111222335789999993332 222 2345567788
Q ss_pred HHHHHHHhCcEEEEEecC
Q 009230 443 VKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 443 Lk~lA~~~~i~vi~~~q~ 460 (539)
|+.++++.+.+||+++|.
T Consensus 163 L~~~~~~~g~tiiivsH~ 180 (251)
T PRK09544 163 IDQLRRELDCAVLMVSHD 180 (251)
T ss_pred HHHHHHhcCCEEEEEecC
Confidence 888888889999999994
No 113
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00028 Score=71.32 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=48.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCCC---HHHHHHHHHHHhhCCCccccc
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENK---VREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~~---~~~~~~r~~~~~~~~~~~~i~ 358 (539)
+..|.+++|.|++|+||||++..++...+..+| .+|.+++.+.- ..+.+ +.++...|++...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL-~~~a~~~gv~~~~~~ 201 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL-RIFGKILGVPVHAVK 201 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHH-HHHHHHcCCceEecC
Confidence 778999999999999999999999998776556 68999998863 22222 334556677766543
No 114
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.92 E-value=0.00032 Score=66.04 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=42.3
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+++.|++++++.+.+||+++|... .+.+.+|.
T Consensus 147 ~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~------------------~~~~~~d~ 200 (213)
T cd03301 147 REPKVFLMDEPLS-------NLD-AKLRVQMRAELKRLQQRLGTTTIYVTHDQV------------------EAMTMADR 200 (213)
T ss_pred cCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhcCe
Confidence 5789999993322 222 344567888888898888999999999322 13457888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 201 i~~l~~ 206 (213)
T cd03301 201 IAVMND 206 (213)
T ss_pred EEEEEC
Confidence 888863
No 115
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.91 E-value=7.4e-05 Score=71.83 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=42.7
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||.
T Consensus 161 ~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~~tH~~~------------------~~~~~~d~ 214 (241)
T cd03256 161 QQPKLILADEPVA-------SLD-PASSRQVMDLLKRINREEGITVIVSLHQVD------------------LAREYADR 214 (241)
T ss_pred cCCCEEEEeCccc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCCE
Confidence 5789999993222 222 334567888888888888999999999422 14467899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 215 v~~l~~ 220 (241)
T cd03256 215 IVGLKD 220 (241)
T ss_pred EEEEEC
Confidence 998864
No 116
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=0.00039 Score=65.82 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=41.8
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+...||.
T Consensus 148 ~~p~lllLDEPt~-------~LD-~~~~~~~~~~l~~~~~~~~~tiii~sH~~~------------------~~~~~~d~ 201 (220)
T cd03293 148 VDPDVLLLDEPFS-------ALD-ALTREQLQEELLDIWRETGKTVLLVTHDID------------------EAVFLADR 201 (220)
T ss_pred cCCCEEEECCCCC-------CCC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHhCCE
Confidence 5789999993222 222 334567788888888888999999999322 14467899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 202 i~~l~~ 207 (220)
T cd03293 202 VVVLSA 207 (220)
T ss_pred EEEEEC
Confidence 888863
No 117
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=0.00016 Score=71.58 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=43.4
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.-. .+...||.
T Consensus 162 ~~P~llllDEPt~-------~LD-~~~~~~l~~~L~~l~~~~g~tviiitHd~~------------------~~~~~~dr 215 (290)
T PRK13634 162 MEPEVLVLDEPTA-------GLD-PKGRKEMMEMFYKLHKEKGLTTVLVTHSME------------------DAARYADQ 215 (290)
T ss_pred cCCCEEEEECCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCCE
Confidence 5799999993332 222 344567888899998888999999999321 13467888
Q ss_pred EEEEEeC
Q 009230 489 GIVIHRN 495 (539)
Q Consensus 489 vl~l~r~ 495 (539)
|+.|..-
T Consensus 216 v~~l~~G 222 (290)
T PRK13634 216 IVVMHKG 222 (290)
T ss_pred EEEEECC
Confidence 8888643
No 118
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.89 E-value=0.0002 Score=66.40 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=92.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHH---HHHHHHH------HHhhCCCc
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVR---EHARKLL------EKHIKKPF 354 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~---~~~~r~~------~~~~~~~~ 354 (539)
+|.+-- +++|+++.|.|++|+|||+++..++--..-. ...|.++.-+ ++.+ ++..|+- +.++..+.
T Consensus 24 ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~-~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD-KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC-CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 344433 9999999999999999999998887554433 4566666544 2332 2233320 01111110
Q ss_pred cc-cccC-CCCCCCCHHHHHHHH-HHhhc---cce---eEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccC
Q 009230 355 FE-ANYG-GSAERMTVEEFEQGK-AWLSN---TFS---LIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425 (539)
Q Consensus 355 ~~-i~~~-~~~~~l~~~~~~~~~-~~l~~---~~~---~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~ 425 (539)
.+ +... .....+++..++++. .+|.- +.. .+ -.+=+..+..=.+.++. ...+|++++.|-
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~--PsELSGGM~KRvaLARA--ialdPell~~DE------- 171 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLY--PSELSGGMRKRVALARA--IALDPELLFLDE------- 171 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhC--chhhcchHHHHHHHHHH--HhcCCCEEEecC-------
Confidence 00 0000 001256666666542 33321 000 00 00111122222222332 235789999992
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 426 ~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+.++.++ -....+.+-++++-+.++.++++|+|.-. .+...||.+++|..-+
T Consensus 172 PtsGLDP-I~a~~~~~LI~~L~~~lg~T~i~VTHDl~------------------s~~~i~Drv~~L~~gk 223 (263)
T COG1127 172 PTSGLDP-ISAGVIDELIRELNDALGLTVIMVTHDLD------------------SLLTIADRVAVLADGK 223 (263)
T ss_pred CCCCCCc-chHHHHHHHHHHHHHhhCCEEEEEECChH------------------HHHhhhceEEEEeCCE
Confidence 2122332 22344555566677789999999999221 1345789999887644
No 119
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.89 E-value=0.00032 Score=67.56 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=43.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+.- .+ ......+.+.|+.++++.+.+||+++|... .+.+.||
T Consensus 131 ~~~p~llllDEPt~~-------LD-~~~~~~l~~~l~~~~~~~~~tiiivsHd~~------------------~~~~~~d 184 (246)
T cd03237 131 SKDADIYLLDEPSAY-------LD-VEQRLMASKVIRRFAENNEKTAFVVEHDII------------------MIDYLAD 184 (246)
T ss_pred hcCCCEEEEeCCccc-------CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 357899999933322 22 234567888888888888999999999422 1456789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 185 ~i~~l~~ 191 (246)
T cd03237 185 RLIVFEG 191 (246)
T ss_pred EEEEEcC
Confidence 8888854
No 120
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.89 E-value=0.00043 Score=65.98 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+.+.||
T Consensus 130 ~~~p~lllLDEPt~-------gLD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 183 (230)
T TIGR01184 130 SIRPKVLLLDEPFG-------ALD-ALTRGNLQEELMQIWEEHRVTVLMVTHDVD------------------EALLLSD 183 (230)
T ss_pred HcCCCEEEEcCCCc-------CCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhcC
Confidence 35789999993322 222 334567888888888888999999999321 2456789
Q ss_pred eEEEEEeCC
Q 009230 488 NGIVIHRNR 496 (539)
Q Consensus 488 ~vl~l~r~~ 496 (539)
.++.|.+.+
T Consensus 184 ~v~~l~~G~ 192 (230)
T TIGR01184 184 RVVMLTNGP 192 (230)
T ss_pred EEEEEeCCc
Confidence 998887543
No 121
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.88 E-value=0.00032 Score=64.17 Aligned_cols=153 Identities=20% Similarity=0.186 Sum_probs=80.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCccccccCCCC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYGGSA 363 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~~~i~~~~~~ 363 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..-. ....|.+-.-. .++..+..++ +.... -+.
T Consensus 15 l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i-~~~~q----~l~----- 83 (180)
T cd03214 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKI-AYVPQ----ALE----- 83 (180)
T ss_pred EeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHH-hHHHH----HHH-----
Confidence 444433 999999999999999999998877644322 23344432111 2233222221 11000 000
Q ss_pred CCCCHHHHHHHHHHhhccceeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHH
Q 009230 364 ERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441 (539)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~ 441 (539)
.+. +.+.+...+ ...+-.+ -...++.+ ..+++++++|.-+. +.+ ......+.+
T Consensus 84 -~~g------l~~~~~~~~--------~~LS~G~~qrl~laral--~~~p~llllDEP~~-------~LD-~~~~~~~~~ 138 (180)
T cd03214 84 -LLG------LAHLADRPF--------NELSGGERQRVLLARAL--AQEPPILLLDEPTS-------HLD-IAHQIELLE 138 (180)
T ss_pred -HcC------CHhHhcCCc--------ccCCHHHHHHHHHHHHH--hcCCCEEEEeCCcc-------CCC-HHHHHHHHH
Confidence 000 001111111 1122222 22233332 35789999993332 122 234556777
Q ss_pred HHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 442 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 442 ~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
.|++++++.+.++|+++|.... +...+|.++.+..
T Consensus 139 ~l~~~~~~~~~tiii~sh~~~~------------------~~~~~d~~~~l~~ 173 (180)
T cd03214 139 LLRRLARERGKTVVMVLHDLNL------------------AARYADRVILLKD 173 (180)
T ss_pred HHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCEEEEEEC
Confidence 7888877778999999994221 3457888888864
No 122
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.88 E-value=0.00044 Score=65.06 Aligned_cols=60 Identities=12% Similarity=0.159 Sum_probs=42.3
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+++.|++++++.+.+||+++|... .+...||.
T Consensus 147 ~~p~~lllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d~ 200 (213)
T cd03259 147 REPSLLLLDEPLS-------ALD-AKLREELREELKELQRELGITTIYVTHDQE------------------EALALADR 200 (213)
T ss_pred cCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHhcCE
Confidence 5789999992221 222 344567888888888878999999999422 14467899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 201 v~~l~~ 206 (213)
T cd03259 201 IAVMNE 206 (213)
T ss_pred EEEEEC
Confidence 888864
No 123
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.88 E-value=0.00029 Score=66.33 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=42.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+.- . +......+.+.|+.+.++.+.+||+++|.... +...+|.
T Consensus 145 ~~p~llllDEPt~~-------L-D~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~------------------~~~~~d~ 198 (213)
T TIGR01277 145 RPNPILLLDEPFSA-------L-DPLLREEMLALVKQLCSERQRTLLMVTHHLSD------------------ARAIASQ 198 (213)
T ss_pred cCCCEEEEcCCCcc-------C-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHhhcCe
Confidence 57899999933322 2 23345678888888888789999999994221 3457899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|+.
T Consensus 199 v~~l~~ 204 (213)
T TIGR01277 199 IAVVSQ 204 (213)
T ss_pred EEEEEC
Confidence 888864
No 124
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=0.00036 Score=70.12 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=33.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
..+++++|+|.-+.-+ + .....++++.|+++.++.+.+||+++|.
T Consensus 170 ~~~P~lLilDEPts~L-------D-~~~~~~i~~lL~~l~~~~g~til~iTHd 214 (327)
T PRK11308 170 MLDPDVVVADEPVSAL-------D-VSVQAQVLNLMMDLQQELGLSYVFISHD 214 (327)
T ss_pred HcCCCEEEEECCCccC-------C-HHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3578999999333222 2 3345678888999999999999999993
No 125
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=0.00027 Score=67.68 Aligned_cols=60 Identities=10% Similarity=0.030 Sum_probs=42.1
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+++.|++++++.+.+||+++|... .+...||.
T Consensus 153 ~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~------------------~~~~~~d~ 206 (235)
T cd03261 153 LDPELLLYDEPTA-------GLD-PIASGVIDDLIRSLKKELGLTSIMVTHDLD------------------TAFAIADR 206 (235)
T ss_pred cCCCEEEecCCcc-------cCC-HHHHHHHHHHHHHHHHhcCcEEEEEecCHH------------------HHHHhcCE
Confidence 5799999993222 222 234567788888888778999999999322 13467899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 207 v~~l~~ 212 (235)
T cd03261 207 IAVLYD 212 (235)
T ss_pred EEEEEC
Confidence 998864
No 126
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.87 E-value=0.00014 Score=69.41 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=42.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|.-. .+...+|
T Consensus 141 ~~~p~vllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~------------------~~~~~~d 194 (230)
T TIGR02770 141 LLEPPFLIADEPTT-------DLD-VVNQARVLKLLRELRQLFGTGILLITHDLG------------------VVARIAD 194 (230)
T ss_pred hcCCCEEEEcCCcc-------ccC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 35789999993322 222 234456788888888878999999999321 1446789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 195 ~i~~l~~ 201 (230)
T TIGR02770 195 EVAVMDD 201 (230)
T ss_pred EEEEEEC
Confidence 9888865
No 127
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.84 E-value=8.1e-05 Score=66.89 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876643
No 128
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=0.00014 Score=78.99 Aligned_cols=162 Identities=19% Similarity=0.156 Sum_probs=82.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCC----
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGG---- 361 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~---- 361 (539)
|+.+.| +.+|+++.|.|++|+||||++.-++-..... .-.-.+.+..+....+..+++.+.... .+.-.+.
T Consensus 46 L~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~Q---dD~l~~~LTV~ 122 (613)
T KOG0061|consen 46 LKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQ---DDVLLPTLTVR 122 (613)
T ss_pred eeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcc---cccccccccHH
Confidence 556677 9999999999999999999999888776532 011223344433333333333221111 1110000
Q ss_pred ----------CCCCCCHHHHHHHHHHhhccceeEeecC--CC-----CCCHHHHHHHHHHHHHHcCCcEEEEcccccccc
Q 009230 362 ----------SAERMTVEEFEQGKAWLSNTFSLIRCEN--DS-----LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH 424 (539)
Q Consensus 362 ----------~~~~l~~~~~~~~~~~l~~~~~~i~~~~--~~-----~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~ 424 (539)
-...++.++.++.++.+-..+-...+.+ -+ ..+-.+-....-..-.-.+|.++++|
T Consensus 123 EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD------- 195 (613)
T KOG0061|consen 123 ETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD------- 195 (613)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec-------
Confidence 0012344444333322211110000100 01 11112222111111223578999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 425 QRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
.+.++.+... ..++++.|+++|++ |.+||++-| ++
T Consensus 196 EPTSGLDS~s-A~~vv~~Lk~lA~~-grtVi~tIHQPs 231 (613)
T KOG0061|consen 196 EPTSGLDSFS-ALQVVQLLKRLARS-GRTVICTIHQPS 231 (613)
T ss_pred CCCCCcchhh-HHHHHHHHHHHHhC-CCEEEEEEeCCc
Confidence 2223334332 35799999999999 998888877 64
No 129
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00013 Score=66.52 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=41.4
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +. +......+.+.|+.++++.+.++++++|.... +...+|
T Consensus 116 ~~~p~llilDEP~~-------~L-D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 169 (178)
T cd03229 116 AMDPDVLLLDEPTS-------AL-DPITRREVRALLKSLQAQLGITVVLVTHDLDE------------------AARLAD 169 (178)
T ss_pred HCCCCEEEEeCCcc-------cC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhcC
Confidence 35789999993221 22 23345677888888888778999999994321 345678
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 170 ~i~~l~~ 176 (178)
T cd03229 170 RVVVLRD 176 (178)
T ss_pred EEEEEeC
Confidence 8887753
No 130
>PRK10867 signal recognition particle protein; Provisional
Probab=97.83 E-value=0.00052 Score=70.94 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH--HHHhhCCCcc
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL--LEKHIKKPFF 355 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~--~~~~~~~~~~ 355 (539)
.+++++|++|+||||++..+|..+..+.|.+|++++++.-.-....++ ++...++++.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 689999999999999999999988774489999999995432222222 2344555543
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00029 Score=66.23 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=42.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+.+.||.
T Consensus 145 ~~p~llllDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d~ 198 (211)
T cd03298 145 RDKPVLLLDEPFA-------ALD-PALRAEMLDLVLDLHAETKMTVLMVTHQPE------------------DAKRLAQR 198 (211)
T ss_pred cCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHH------------------HHHhhhCE
Confidence 5789999993332 222 234456888888888888999999999422 14467898
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 199 i~~l~~ 204 (211)
T cd03298 199 VVFLDN 204 (211)
T ss_pred EEEEEC
Confidence 888864
No 132
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.83 E-value=0.00045 Score=66.15 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=42.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +. +......+.+.|++++++.+.+||+++|.... +...||
T Consensus 169 ~~~p~llllDEPt~-------~L-D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d 222 (236)
T cd03267 169 LHEPEILFLDEPTI-------GL-DVVAQENIRNFLKEYNRERGTTVLLTSHYMKD------------------IEALAR 222 (236)
T ss_pred hcCCCEEEEcCCCC-------CC-CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHH------------------HHHhCC
Confidence 35789999993322 22 23445678888888888889999999994321 346788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 223 ~i~~l~~ 229 (236)
T cd03267 223 RVLVIDK 229 (236)
T ss_pred EEEEEeC
Confidence 8888863
No 133
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=0.00019 Score=70.84 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=29.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 22 AIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5666655 999999999999999999998887754
No 134
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=0.00039 Score=65.80 Aligned_cols=61 Identities=11% Similarity=0.199 Sum_probs=42.5
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+.+.+|
T Consensus 147 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~------------------~~~~~~d 200 (220)
T cd03265 147 VHRPEVLFLDEPTI-------GLD-PQTRAHVWEYIEKLKEEFGMTILLTTHYME------------------EAEQLCD 200 (220)
T ss_pred hcCCCEEEEcCCcc-------CCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 45899999993332 222 234567788888888888999999999422 1446788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 201 ~i~~l~~ 207 (220)
T cd03265 201 RVAIIDH 207 (220)
T ss_pred EEEEEeC
Confidence 8888864
No 135
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=0.00037 Score=61.13 Aligned_cols=155 Identities=17% Similarity=0.275 Sum_probs=85.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH-------HHHHHHhhCCCccc----cc----
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA-------RKLLEKHIKKPFFE----AN---- 358 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~-------~r~~~~~~~~~~~~----i~---- 358 (539)
+.|||+..|.|.+|+||||++.-++.+++-. ...|.|-+-.-.+.++. ++++....|+--.. ++
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~-~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VS 107 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVS 107 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCC-CCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeec
Confidence 9999999999999999999999988887765 55777776433322221 22332222221111 11
Q ss_pred cCCCCCC--CCH-----HHH-HHHHHHhhccceeE-eecCCC---CCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 359 YGGSAER--MTV-----EEF-EQGKAWLSNTFSLI-RCENDS---LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 359 ~~~~~~~--l~~-----~~~-~~~~~~l~~~~~~i-~~~~~~---~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
.|++.+. |.. ..+ +.+.+|+.+--+-. +.++.+ +..+.+-+..++.++ ..+++||.|.-+
T Consensus 108 AG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLV--t~PrLvfMDEPT------ 179 (258)
T COG4107 108 AGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLV--TRPRLVFMDEPT------ 179 (258)
T ss_pred cCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhc--cCCceEEecCCC------
Confidence 0111000 000 011 33467776521100 011000 111222233333332 368999999221
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
+.-+-..+..++.-|+.+..+++.++++++|
T Consensus 180 --GGLDVSVQARLLDllrgLv~~l~la~viVTH 210 (258)
T COG4107 180 --GGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210 (258)
T ss_pred --CCcchhhHHHHHHHHHHHHHhcCceEEEEec
Confidence 2223345678999999999999999999999
No 136
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.82 E-value=0.00059 Score=68.62 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++.+.- +.+|+++.|.|++|+|||||+.-|+--
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl 70 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL 70 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4555544 999999999999999999998887643
No 137
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.81 E-value=0.00015 Score=69.74 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=41.7
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +.+.||.
T Consensus 162 ~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~------------------~~~~~d~ 215 (243)
T TIGR02315 162 QQPDLILADEPIA-------SLD-PKTSKQVMDYLKRINKEDGITVIINLHQVDL------------------AKKYADR 215 (243)
T ss_pred cCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcCe
Confidence 5789999993322 222 2344567788888887778999999994221 3467899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 216 v~~l~~ 221 (243)
T TIGR02315 216 IVGLKA 221 (243)
T ss_pred EEEEEC
Confidence 888864
No 138
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.81 E-value=0.00038 Score=68.00 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=42.4
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+...+|
T Consensus 165 ~~~p~lllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~g~tviivsH~~~------------------~~~~~~d 218 (267)
T PRK15112 165 ILRPKVIIADEALA-------SLD-MSMRSQLINLMLELQEKQGISYIYVTQHLG------------------MMKHISD 218 (267)
T ss_pred HhCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCcEEEEEeCCHH------------------HHHHhcC
Confidence 35799999993332 222 234567788888888888999999999422 1445788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 219 ~i~~l~~ 225 (267)
T PRK15112 219 QVLVMHQ 225 (267)
T ss_pred EEEEEEC
Confidence 8888864
No 139
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=0.00059 Score=69.10 Aligned_cols=45 Identities=11% Similarity=0.204 Sum_probs=33.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.
T Consensus 156 ~~~p~iLlLDEPts-------~LD-~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 156 ASNPKVLLCDEATS-------ALD-PATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 35799999993322 222 2345678888888888889999999993
No 140
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00033 Score=70.47 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=34.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..++|.|++|+||||++..+|..+..+ |.+|++++.+-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCC
Confidence 588999999999999999999988764 99999999874
No 141
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=0.00074 Score=64.50 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=42.6
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||
T Consensus 156 ~~~p~lllLDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~~d 209 (233)
T cd03258 156 ANNPKVLLCDEATS-------ALD-PETTQSILALLRDINRELGLTIVLITHEME------------------VVKRICD 209 (233)
T ss_pred hcCCCEEEecCCCC-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhCC
Confidence 35789999993221 222 234567888888888888999999999321 1456789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|.+
T Consensus 210 ~i~~l~~ 216 (233)
T cd03258 210 RVAVMEK 216 (233)
T ss_pred EEEEEEC
Confidence 9888864
No 142
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.79 E-value=0.00043 Score=65.72 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877753
No 143
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.79 E-value=0.00072 Score=64.76 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=41.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +. .||
T Consensus 148 ~~~p~llllDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~-~~d 200 (236)
T TIGR03864 148 LHRPALLLLDEPTV-------GLD-PASRAAIVAHVRALCRDQGLSVLWATHLVDE------------------IE-ADD 200 (236)
T ss_pred hcCCCEEEEcCCcc-------CCC-HHHHHHHHHHHHHHHHhCCCEEEEEecChhh------------------Hh-hCC
Confidence 35789999993322 222 3345678888888887778999999994321 23 378
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 201 ~i~~l~~ 207 (236)
T TIGR03864 201 RLVVLHR 207 (236)
T ss_pred EEEEEeC
Confidence 8888864
No 144
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00038 Score=70.87 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.++.+++|.|++|+||||++.++|.......|.+|++++++.
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 356789999999999999999999877544589999999885
No 145
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.78 E-value=0.00069 Score=69.99 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=35.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+++++|++|+||||++..+|..+..+.|.+|++++++.-
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 5899999999999999999999976435899999999954
No 146
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.78 E-value=0.00047 Score=66.87 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 999999999999999999998877643
No 147
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.78 E-value=0.0003 Score=64.49 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4455544 999999999999999999998876644
No 148
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=0.00026 Score=64.22 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876643
No 149
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.77 E-value=0.00064 Score=63.56 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 16 LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 999999999999999999998877643
No 150
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.77 E-value=0.00031 Score=63.80 Aligned_cols=132 Identities=16% Similarity=0.051 Sum_probs=74.5
Q ss_pred hhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCC
Q 009230 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMT 367 (539)
Q Consensus 288 LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~ 367 (539)
++..+.+.+|+++.|.|++|+|||||+.-++-...- ....+.+-... ...+.+. ..++
T Consensus 16 l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~------------------i~~~~q~---~~LS 73 (177)
T cd03222 16 LVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGIT------------------PVYKPQY---IDLS 73 (177)
T ss_pred EccCcEECCCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEE------------------EEEEccc---CCCC
Confidence 343334899999999999999999998866643322 23344332100 0000000 0011
Q ss_pred HHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 009230 368 VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447 (539)
Q Consensus 368 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA 447 (539)
..+ ..-...++.+ ..+++++++|.-+. +.+ ......+.+.|++++
T Consensus 74 gGq-------------------------~qrv~laral--~~~p~lllLDEPts-------~LD-~~~~~~l~~~l~~~~ 118 (177)
T cd03222 74 GGE-------------------------LQRVAIAAAL--LRNATFYLFDEPSA-------YLD-IEQRLNAARAIRRLS 118 (177)
T ss_pred HHH-------------------------HHHHHHHHHH--hcCCCEEEEECCcc-------cCC-HHHHHHHHHHHHHHH
Confidence 111 1112222222 24789999993322 222 234456777787777
Q ss_pred HHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 448 ~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
++.+.+|++++|.... +...||.++.+..
T Consensus 119 ~~~~~tiiivsH~~~~------------------~~~~~d~i~~l~~ 147 (177)
T cd03222 119 EEGKKTALVVEHDLAV------------------LDYLSDRIHVFEG 147 (177)
T ss_pred HcCCCEEEEEECCHHH------------------HHHhCCEEEEEcC
Confidence 7656899999994321 3467888888864
No 151
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.77 E-value=0.00067 Score=61.51 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=25.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+.+-- +.+|+++.|.|++|+|||||+.-++
T Consensus 11 l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444433 9999999999999999999997653
No 152
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.76 E-value=0.00028 Score=72.56 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl 52 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT 52 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 444433 999999999999999999998877643
No 153
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00035 Score=64.59 Aligned_cols=183 Identities=20% Similarity=0.172 Sum_probs=96.5
Q ss_pred cccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC----CCHHHHHHHHHHHhhCCCcc
Q 009230 281 ISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPFF 355 (539)
Q Consensus 281 i~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E----~~~~~~~~r~~~~~~~~~~~ 355 (539)
+|-+-..|+++-- +.+||++.|.|++|+|||||+..+.-- ... ....+++..+ +...++ +++. ...|+=+.
T Consensus 13 yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d~-t~G~i~~~g~~i~~~~~k~l-r~~r-~~iGmIfQ 88 (258)
T COG3638 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VDP-TSGEILFNGVQITKLKGKEL-RKLR-RDIGMIFQ 88 (258)
T ss_pred cCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cCC-CcceEEecccchhccchHHH-HHHH-HhceeEec
Confidence 4445566666654 999999999999999999999877652 211 2223334433 222222 1111 11111110
Q ss_pred c-----------------cccC----CCCCCCCHHHHHHHHHHhhccc----eeEeecCCCCCCHHHHHHHHHHHHHHcC
Q 009230 356 E-----------------ANYG----GSAERMTVEEFEQGKAWLSNTF----SLIRCENDSLPSIKWVLDLAKAAVLRHG 410 (539)
Q Consensus 356 ~-----------------i~~~----~~~~~l~~~~~~~~~~~l~~~~----~~i~~~~~~~~~~~~i~~~i~~~~~~~~ 410 (539)
. +-+. ...+-++.++...+.+.|..-- -+-+.+ .-+...-+=.+.++.++ .+
T Consensus 89 ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-~LSGGQQQRVaIARaL~--Q~ 165 (258)
T COG3638 89 QFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-TLSGGQQQRVAIARALV--QQ 165 (258)
T ss_pred cCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-cCCcchhHHHHHHHHHh--cC
Confidence 0 0000 0012456666666655443210 011111 01111122233333333 46
Q ss_pred CcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEE
Q 009230 411 VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGI 490 (539)
Q Consensus 411 ~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl 490 (539)
+++|.=|.=.. +.+ ......+|+.|++++++.|++||+..|.-.. ..++||.++
T Consensus 166 pkiILADEPva-------sLD-p~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl------------------A~~Y~~Rii 219 (258)
T COG3638 166 PKIILADEPVA-------SLD-PESAKKVMDILKDINQEDGITVIVNLHQVDL------------------AKKYADRII 219 (258)
T ss_pred CCEEecCCccc-------ccC-hhhHHHHHHHHHHHHHHcCCEEEEEechHHH------------------HHHHHhhhe
Confidence 88988882221 222 2345689999999999999999999993221 125778888
Q ss_pred EEEeCC
Q 009230 491 VIHRNR 496 (539)
Q Consensus 491 ~l~r~~ 496 (539)
.|...+
T Consensus 220 gl~~G~ 225 (258)
T COG3638 220 GLKAGR 225 (258)
T ss_pred EecCCc
Confidence 876543
No 154
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=0.0011 Score=66.71 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=29.1
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 ~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34666554 999999999999999999998887754
No 155
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.75 E-value=0.00036 Score=65.59 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998877643
No 156
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.75 E-value=0.00087 Score=64.16 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 999999999999999999998877643
No 157
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.74 E-value=0.0011 Score=63.05 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=42.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +. .||
T Consensus 153 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~------------------~~-~~d 205 (225)
T PRK10247 153 QFMPKVLLLDEITS-------ALD-ESNKHNVNEIIHRYVREQNIAVLWVTHDKDE------------------IN-HAD 205 (225)
T ss_pred hcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEECChHH------------------HH-hCC
Confidence 35789999993322 222 2345677888888888889999999994321 33 489
Q ss_pred eEEEEEeCC
Q 009230 488 NGIVIHRNR 496 (539)
Q Consensus 488 ~vl~l~r~~ 496 (539)
.++.|.+..
T Consensus 206 ~i~~l~~~~ 214 (225)
T PRK10247 206 KVITLQPHA 214 (225)
T ss_pred EEEEEeccc
Confidence 999986543
No 158
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.00061 Score=67.15 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=42.8
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+.- .+ ......+++.|++++++.+.+|++++|.-. .+.+.||
T Consensus 157 ~~~p~lLilDEPt~g-------LD-~~~~~~l~~~l~~l~~~~g~tillvsH~~~------------------~~~~~~d 210 (283)
T PRK13636 157 VMEPKVLVLDEPTAG-------LD-PMGVSEIMKLLVEMQKELGLTIIIATHDID------------------IVPLYCD 210 (283)
T ss_pred HcCCCEEEEeCCccC-------CC-HHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------HHHHhCC
Confidence 457999999933322 22 234557888888888888999999999321 1345788
Q ss_pred eEEEEEeC
Q 009230 488 NGIVIHRN 495 (539)
Q Consensus 488 ~vl~l~r~ 495 (539)
.++.|...
T Consensus 211 ri~~l~~G 218 (283)
T PRK13636 211 NVFVMKEG 218 (283)
T ss_pred EEEEEECC
Confidence 88888653
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.74 E-value=0.00024 Score=68.05 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=42.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++.+.+.+||+++|.... +...||
T Consensus 146 ~~~p~llllDEP~~-------~LD-~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~------------------~~~~~d 199 (237)
T TIGR00968 146 AVEPQVLLLDEPFG-------ALD-AKVRKELRSWLRKLHDEVHVTTVFVTHDQEE------------------AMEVAD 199 (237)
T ss_pred hcCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHhhcC
Confidence 35789999993332 222 2345677888888887779999999994321 345778
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 200 ~i~~l~~ 206 (237)
T TIGR00968 200 RIVVMSN 206 (237)
T ss_pred EEEEEEC
Confidence 8888864
No 160
>PRK14974 cell division protein FtsY; Provisional
Probab=97.74 E-value=0.001 Score=66.59 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=34.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..++++.|++|+||||.+..++..+.. .|.+|++++.+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt 178 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDT 178 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCc
Confidence 469999999999999999999987765 489999998874
No 161
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=0.00052 Score=64.46 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344433 999999999999999999998887743
No 162
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=0.001 Score=64.48 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=42.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||
T Consensus 144 ~~~p~lllLDEPt~-------~LD-~~~~~~l~~~L~~~~~~~g~tviivsH~~~------------------~~~~~~d 197 (255)
T PRK11248 144 AANPQLLLLDEPFG-------ALD-AFTREQMQTLLLKLWQETGKQVLLITHDIE------------------EAVFMAT 197 (255)
T ss_pred hcCCCEEEEeCCCc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 35799999993222 222 234566778888887777999999999422 1456789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 198 ~i~~l~~ 204 (255)
T PRK11248 198 ELVLLSP 204 (255)
T ss_pred EEEEEeC
Confidence 9888863
No 163
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.73 E-value=0.00078 Score=63.53 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3454444 999999999999999999998877643
No 164
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.73 E-value=0.001 Score=63.34 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=42.3
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+.+.||.
T Consensus 162 ~~p~lllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d~ 215 (228)
T cd03257 162 LNPKLLIADEPTS-------ALD-VSVQAQILDLLKKLQEELGLTLLFITHDLG------------------VVAKIADR 215 (228)
T ss_pred cCCCEEEecCCCC-------CCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhcCe
Confidence 5789999993322 222 234567888888888877999999999422 14567899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|+.
T Consensus 216 i~~l~~ 221 (228)
T cd03257 216 VAVMYA 221 (228)
T ss_pred EEEEeC
Confidence 988864
No 165
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.73 E-value=0.00087 Score=63.29 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3444444 999999999999999999998877644
No 166
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.72 E-value=0.00044 Score=64.04 Aligned_cols=34 Identities=35% Similarity=0.546 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444 999999999999999999998877654
No 167
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.72 E-value=0.00071 Score=67.41 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+||||++.-++--
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl 56 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL 56 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555544 999999999999999999998887643
No 168
>PF13173 AAA_14: AAA domain
Probab=97.72 E-value=0.00033 Score=60.14 Aligned_cols=41 Identities=15% Similarity=0.257 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
+.+++|.|+.|+||||++.|++.... ...+++|++++....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHH
Confidence 46899999999999999999998776 367899999987555
No 169
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.72 E-value=0.001 Score=62.68 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 999999999999999999998877654
No 170
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00075 Score=64.42 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=42.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-.. +.+ ......+.+.|+.++++.+.+||+++|.... +...+|
T Consensus 146 ~~~p~llllDEP~~-------gLD-~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~------------------~~~~~d 199 (232)
T cd03300 146 VNEPKVLLLDEPLG-------ALD-LKLRKDMQLELKRLQKELGITFVFVTHDQEE------------------ALTMSD 199 (232)
T ss_pred hcCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH------------------HHHhcC
Confidence 35789999993221 222 2344567788888888789999999993221 346788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 200 ~i~~l~~ 206 (232)
T cd03300 200 RIAVMNK 206 (232)
T ss_pred EEEEEEC
Confidence 8888864
No 171
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.71 E-value=0.00042 Score=65.84 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=80.0
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCccccccC
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYG 360 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~~~i~~~ 360 (539)
...+|.+-- +.+|+...|.|.+|+||||++.-++.= ..-....+.|=.-+ ++.++...++...+..+.+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl------ 98 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-EEPTSGEILFEGKDITKLSKEERRERVLELLEKVGL------ 98 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-cCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCC------
Confidence 355666655 999999999999999999998876532 22223444433222 2223333333322222211
Q ss_pred CCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHH
Q 009230 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQML 440 (539)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~ 440 (539)
.++ .+...++-+ .+..... +..++.+ ..+++++|-|-....+. .....+++
T Consensus 99 ------~~~-------~~~ryPhel----SGGQrQR--i~IARAL--al~P~liV~DEpvSaLD--------vSiqaqIl 149 (268)
T COG4608 99 ------PEE-------FLYRYPHEL----SGGQRQR--IGIARAL--ALNPKLIVADEPVSALD--------VSVQAQIL 149 (268)
T ss_pred ------CHH-------HhhcCCccc----Cchhhhh--HHHHHHH--hhCCcEEEecCchhhcc--------hhHHHHHH
Confidence 111 111222322 2333222 2222322 24799999995444332 23456888
Q ss_pred HHHHHHHHHhCcEEEEEec
Q 009230 441 TMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 441 ~~Lk~lA~~~~i~vi~~~q 459 (539)
.-|+.+-++++++.+.++|
T Consensus 150 nLL~dlq~~~~lt~lFIsH 168 (268)
T COG4608 150 NLLKDLQEELGLTYLFISH 168 (268)
T ss_pred HHHHHHHHHhCCeEEEEEE
Confidence 9999999999999999999
No 172
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00033 Score=69.21 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=42.6
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.-. .+...||
T Consensus 160 ~~~P~llllDEPt~-------gLD-~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~------------------~~~~~~d 213 (287)
T PRK13637 160 AMEPKILILDEPTA-------GLD-PKGRDEILNKIKELHKEYNMTIILVSHSME------------------DVAKLAD 213 (287)
T ss_pred HcCCCEEEEECCcc-------CCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 35789999993332 222 244567888888888888999999999311 1335788
Q ss_pred eEEEEEeC
Q 009230 488 NGIVIHRN 495 (539)
Q Consensus 488 ~vl~l~r~ 495 (539)
.++.|...
T Consensus 214 rv~~l~~G 221 (287)
T PRK13637 214 RIIVMNKG 221 (287)
T ss_pred EEEEEECC
Confidence 88888653
No 173
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.71 E-value=0.0009 Score=63.48 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998876643
No 174
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.71 E-value=0.00043 Score=67.55 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=41.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +...||
T Consensus 163 ~~~p~lllLDEPt~-------~LD-~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~------------------i~~~~d 216 (265)
T PRK10575 163 AQDSRCLLLDEPTS-------ALD-IAHQVDVLALVHRLSQERGLTVIAVLHDINM------------------AARYCD 216 (265)
T ss_pred hcCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCC
Confidence 35899999993322 222 2345577888888888789999999994221 345677
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|.+
T Consensus 217 ~i~~l~~ 223 (265)
T PRK10575 217 YLVALRG 223 (265)
T ss_pred EEEEEEC
Confidence 7777764
No 175
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.70 E-value=0.00076 Score=65.80 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=42.0
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||.
T Consensus 167 ~~p~illLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~g~tiiivsH~~~------------------~~~~~~d~ 220 (265)
T TIGR02769 167 VKPKLIVLDEAVS-------NLD-MVLQAVILELLRKLQQAFGTAYLFITHDLR------------------LVQSFCQR 220 (265)
T ss_pred cCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHH------------------HHHHHhcE
Confidence 5789999993332 222 234457888888888888999999999322 13457888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 221 i~~l~~ 226 (265)
T TIGR02769 221 VAVMDK 226 (265)
T ss_pred EEEEeC
Confidence 888864
No 176
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00033 Score=71.01 Aligned_cols=33 Identities=15% Similarity=0.307 Sum_probs=27.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 21 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHC
Confidence 3555543 99999999999999999999877653
No 177
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00066 Score=64.80 Aligned_cols=61 Identities=16% Similarity=0.171 Sum_probs=42.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +.+.+|
T Consensus 145 ~~~p~lllLDEP~~-------gLD-~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d 198 (232)
T PRK10771 145 VREQPILLLDEPFS-------ALD-PALRQEMLTLVSQVCQERQLTLLMVSHSLED------------------AARIAP 198 (232)
T ss_pred hcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhCC
Confidence 35789999993322 222 2344567788888888889999999994322 346788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 199 ~i~~l~~ 205 (232)
T PRK10771 199 RSLVVAD 205 (232)
T ss_pred EEEEEEC
Confidence 8888864
No 178
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.70 E-value=0.0012 Score=63.58 Aligned_cols=60 Identities=17% Similarity=0.117 Sum_probs=41.6
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||.
T Consensus 152 ~~p~llllDEPt~-------~LD-~~~~~~l~~~L~~~~~~~g~tvii~sH~~~------------------~~~~~~d~ 205 (242)
T cd03295 152 ADPPLLLMDEPFG-------ALD-PITRDQLQEEFKRLQQELGKTIVFVTHDID------------------EAFRLADR 205 (242)
T ss_pred cCCCEEEecCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEecCHH------------------HHHHhCCE
Confidence 5789999993322 222 234557788888888877899999999321 13467888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 206 i~~l~~ 211 (242)
T cd03295 206 IAIMKN 211 (242)
T ss_pred EEEEEC
Confidence 888864
No 179
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.69 E-value=0.0011 Score=62.33 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998877644
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.0011 Score=65.43 Aligned_cols=34 Identities=32% Similarity=0.244 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3455444 999999999999999999998877644
No 181
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.69 E-value=0.00099 Score=64.55 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=41.8
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...+|
T Consensus 156 ~~~p~lLlLDEPt~-------~LD-~~~~~~l~~~L~~~~~~~g~til~~sH~~~------------------~~~~~~d 209 (254)
T PRK10418 156 LCEAPFIIADEPTT-------DLD-VVAQARILDLLESIVQKRALGMLLVTHDMG------------------VVARLAD 209 (254)
T ss_pred hcCCCEEEEeCCCc-------ccC-HHHHHHHHHHHHHHHHhcCcEEEEEecCHH------------------HHHHhCC
Confidence 35789999993332 222 234457788888888888999999999321 1345678
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 210 ~v~~l~~ 216 (254)
T PRK10418 210 DVAVMSH 216 (254)
T ss_pred EEEEEEC
Confidence 8887764
No 182
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=0.00056 Score=67.32 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=27.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 59 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL 59 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4555544 999999999999999999998877644
No 183
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.69 E-value=0.0013 Score=64.27 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=42.5
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +...||
T Consensus 167 ~~~p~lllLDEPt~-------~LD-~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~------------------i~~~~d 220 (268)
T PRK10419 167 AVEPKLLILDEAVS-------NLD-LVLQAGVIRLLKKLQQQFGTACLFITHDLRL------------------VERFCQ 220 (268)
T ss_pred hcCCCEEEEeCCCc-------ccC-HHHHHHHHHHHHHHHHHcCcEEEEEECCHHH------------------HHHhCC
Confidence 35789999993322 222 2345568888888888889999999994321 445788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 221 ~i~~l~~ 227 (268)
T PRK10419 221 RVMVMDN 227 (268)
T ss_pred EEEEEEC
Confidence 8888864
No 184
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.69 E-value=0.0014 Score=63.97 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=35.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.++.++++.|++|+||||.+..+|..++.. |.+|++++.+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-GKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeCCC
Confidence 345688899999999999999999988764 89999999885
No 185
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.69 E-value=0.0011 Score=66.84 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=33.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
-.++++++.|.-+.- . +......+++.|+.+.++++.++|+++|
T Consensus 177 ~~~P~llilDEPts~-------L-D~~~~~~i~~lL~~l~~~~g~til~iTH 220 (330)
T PRK09473 177 LCRPKLLIADEPTTA-------L-DVTVQAQIMTLLNELKREFNTAIIMITH 220 (330)
T ss_pred HcCCCEEEEeCCCcc-------C-CHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 357999999933322 2 2344567888899999889999999999
No 186
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00084 Score=68.24 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+||||++.-++--
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl 53 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence 4555544 999999999999999999998877643
No 187
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=0.00075 Score=66.28 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=41.9
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|.-. .+...||
T Consensus 153 ~~~p~llilDEPt~-------gLD-~~~~~~l~~~l~~l~~~~g~tvli~tH~~~------------------~~~~~~d 206 (277)
T PRK13652 153 AMEPQVLVLDEPTA-------GLD-PQGVKELIDFLNDLPETYGMTVIFSTHQLD------------------LVPEMAD 206 (277)
T ss_pred HcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHH------------------HHHHhCC
Confidence 35789999993332 222 234557788888888888999999999322 1345777
Q ss_pred eEEEEEeC
Q 009230 488 NGIVIHRN 495 (539)
Q Consensus 488 ~vl~l~r~ 495 (539)
.++.|+..
T Consensus 207 rv~~l~~G 214 (277)
T PRK13652 207 YIYVMDKG 214 (277)
T ss_pred EEEEEECC
Confidence 87777653
No 188
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.68 E-value=0.00093 Score=63.10 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++--
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444443 999999999999999999998877643
No 189
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.68 E-value=0.00026 Score=62.75 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=85.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhh-------------CCCccccccC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHI-------------KKPFFEANYG 360 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~-------------~~~~~~i~~~ 360 (539)
++.|+.+.|.|++|+|||||+.=+|--..-+ ...+..-.-+++...-.+|=.++.. ++.+..-
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~--- 97 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS--- 97 (231)
T ss_pred ecCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---
Confidence 8999999999999999999976655433322 2333333333332222222211111 1111100
Q ss_pred CCCCCCCHHHHHHHHHHh---------hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCC
Q 009230 361 GSAERMTVEEFEQGKAWL---------SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431 (539)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l---------~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~ 431 (539)
+.-+++.++.+++...+ +..+--. .+ .-.+-.+.++-+++.. .+..+|.-..-+ +
T Consensus 98 -P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L----SG--GqRQRvALARclvR~~--PilLLDEPFsAL-------d 161 (231)
T COG3840 98 -PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL----SG--GQRQRVALARCLVREQ--PILLLDEPFSAL-------D 161 (231)
T ss_pred -cccccCHHHHHHHHHHHHHhChhhHhhhCcccc----Cc--hHHHHHHHHHHHhccC--CeEEecCchhhc-------C
Confidence 11256666655443222 1111111 12 2233344445555543 367777222211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 432 ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 432 ~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
. .--.++..-+..++.+.+.++++|+| +.. ..+.+|.++++.+-+
T Consensus 162 P-~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-------------------a~~ia~~~~fl~~Gr 207 (231)
T COG3840 162 P-ALRAEMLALVSQLCDERKMTLLMVTHHPED-------------------AARIADRVVFLDNGR 207 (231)
T ss_pred H-HHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-------------------HHHhhhceEEEeCCE
Confidence 1 11245677778899999999999999 432 235788888887543
No 190
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.68 E-value=0.00068 Score=69.68 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.+++++|++|+||||.+..+|..+..+ |.+|+.++.+-
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~kV~lV~~D~ 138 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK-GFKPCLVCADT 138 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEcCcc
Confidence 589999999999999999999987764 99999999884
No 191
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=0.0011 Score=63.76 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=42.5
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +...||
T Consensus 147 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~------------------~~~~~d 200 (241)
T PRK14250 147 ANNPEVLLLDEPTS-------ALD-PTSTEIIEELIVKLKNKMNLTVIWITHNMEQ------------------AKRIGD 200 (241)
T ss_pred hcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhCCCEEEEEeccHHH------------------HHHhCC
Confidence 35889999993332 222 2345567788888888789999999994221 346789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 201 ~i~~l~~ 207 (241)
T PRK14250 201 YTAFLNK 207 (241)
T ss_pred EEEEEeC
Confidence 9888874
No 192
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=0.0011 Score=63.64 Aligned_cols=60 Identities=13% Similarity=0.228 Sum_probs=41.5
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||.
T Consensus 153 ~~p~llllDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tvii~sH~~~------------------~~~~~~d~ 206 (239)
T cd03296 153 VEPKVLLLDEPFG-------ALD-AKVRKELRRWLRRLHDELHVTTVFVTHDQE------------------EALEVADR 206 (239)
T ss_pred cCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH------------------HHHHhCCE
Confidence 5789999993322 222 234456778888888878999999999322 13457888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 207 i~~l~~ 212 (239)
T cd03296 207 VVVMNK 212 (239)
T ss_pred EEEEEC
Confidence 888864
No 193
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.67 E-value=0.00014 Score=74.29 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=32.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|.=+. +.+ ......+...|+++.++.++++|+++|.
T Consensus 161 ~~P~llLLDEP~s-------~LD-~~~r~~l~~~L~~l~~~~g~tiI~vTHd 204 (375)
T PRK09452 161 NKPKVLLLDESLS-------ALD-YKLRKQMQNELKALQRKLGITFVFVTHD 204 (375)
T ss_pred cCCCEEEEeCCCC-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4789999992221 222 2334568888899999999999999993
No 194
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.67 E-value=0.0012 Score=67.12 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-|+--
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 444443 899999999999999999998877643
No 195
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.66 E-value=0.0011 Score=67.34 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=27.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999887764
No 196
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.66 E-value=0.00071 Score=67.35 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=27.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3555544 99999999999999999999877664
No 197
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.66 E-value=0.00036 Score=68.56 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=37.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~ 336 (539)
+..+.+++|.|++|+||||++..++..++..+| .+|.+++++.
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 346789999999999999999999999887534 8999999885
No 198
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.0014 Score=64.15 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=42.3
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...+|
T Consensus 176 ~~~p~illLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~g~tiii~tH~~~------------------~~~~~~d 229 (269)
T cd03294 176 AVDPDILLMDEAFS-------ALD-PLIRREMQDELLRLQAELQKTIVFITHDLD------------------EALRLGD 229 (269)
T ss_pred hcCCCEEEEcCCCc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhcC
Confidence 35789999993221 222 344567788888888777899999999421 1446789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 230 ~v~~l~~ 236 (269)
T cd03294 230 RIAIMKD 236 (269)
T ss_pred EEEEEEC
Confidence 8888864
No 199
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=0.00049 Score=67.34 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444444 999999999999999999998777644
No 200
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.65 E-value=0.00094 Score=64.88 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=42.8
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +.+.||
T Consensus 167 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~isH~~~~------------------~~~~~d 220 (258)
T PRK11701 167 VTHPRLVFMDEPTG-------GLD-VSVQARLLDLLRGLVRELGLAVVIVTHDLAV------------------ARLLAH 220 (258)
T ss_pred hcCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcC
Confidence 35799999993322 222 2345677888888888889999999994322 345788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 221 ~i~~l~~ 227 (258)
T PRK11701 221 RLLVMKQ 227 (258)
T ss_pred EEEEEEC
Confidence 8888875
No 201
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.65 E-value=0.0012 Score=61.85 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444433 899999999999999999998877643
No 202
>PRK10908 cell division protein FtsE; Provisional
Probab=97.65 E-value=0.0014 Score=62.04 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998887643
No 203
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.65 E-value=0.0011 Score=66.13 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3455544 999999999999999999998877643
No 204
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00055 Score=68.07 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=28.7
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35666554 999999999999999999998877643
No 205
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.0017 Score=59.11 Aligned_cols=173 Identities=20% Similarity=0.159 Sum_probs=95.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHH--HHhhCC--Cc-----
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLL--EKHIKK--PF----- 354 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~--~~~~~~--~~----- 354 (539)
||.+-- +++||+..|.||.|+|||||+..+.-.+.-. +..|.|+... .+++++.++.. -+.+.+ +|
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~-~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV 95 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV 95 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC-CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence 444433 9999999999999999999999988777643 5677777654 55666654431 111111 11
Q ss_pred ---cccccCCCCCCCCHHHH---HHHHH-----HhhccceeEeecCCCCCCHHHHHHHHHHHHHHcC----CcEEEEccc
Q 009230 355 ---FEANYGGSAERMTVEEF---EQGKA-----WLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHG----VRGLVIDPY 419 (539)
Q Consensus 355 ---~~i~~~~~~~~l~~~~~---~~~~~-----~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~----~~~vvID~~ 419 (539)
..+..+ .+.-..++- +++.. .+..+.+-- . .+.. .+=...++-++.... .+.+++|.=
T Consensus 96 V~mGr~p~~--~g~~~~e~~~i~~~ala~~d~~~la~R~y~~-L--SGGE--qQRVqlARvLaQl~~~v~~~r~L~LDEP 168 (259)
T COG4559 96 VQMGRIPHR--SGREPEEDERIAAQALAATDLSGLAGRDYRT-L--SGGE--QQRVQLARVLAQLWPPVPSGRWLFLDEP 168 (259)
T ss_pred HHhcccccc--cCCCchhhHHHHHHHHHHcChhhhhccchhh-c--CchH--HHHHHHHHHHHHccCCCCCCceEEecCC
Confidence 111111 112211221 22221 222222211 0 1111 222333444444443 358899922
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 420 NELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 420 ~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+ +..+- .-+..+++..+.||++- +.|+++-| -.- -.++||.++.|++-+
T Consensus 169 t-------saLDi-~HQ~~tl~laR~la~~g-~~V~~VLHDLNL-------------------AA~YaDrivll~~Gr 218 (259)
T COG4559 169 T-------SALDI-AHQHHTLRLARQLAREG-GAVLAVLHDLNL-------------------AAQYADRIVLLHQGR 218 (259)
T ss_pred c-------cccch-HHHHHHHHHHHHHHhcC-CcEEEEEccchH-------------------HHHhhheeeeeeCCe
Confidence 2 22222 23456889999999876 77888777 221 236899999998755
No 206
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.64 E-value=0.00052 Score=67.47 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=32.9
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
...++++++|.-+. +.+ ......+++.|+.++++.+.+||+++|.
T Consensus 156 ~~~p~lllLDEPt~-------gLD-~~~~~~l~~~l~~l~~~~~~tilivsH~ 200 (279)
T PRK13635 156 ALQPDIIILDEATS-------MLD-PRGRREVLETVRQLKEQKGITVLSITHD 200 (279)
T ss_pred HcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 35789999993322 222 2345678888888988889999999993
No 207
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.64 E-value=0.0014 Score=63.72 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877654
No 208
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.64 E-value=0.00079 Score=63.35 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444443 999999999999999999998876643
No 209
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.63 E-value=0.0013 Score=62.82 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhcc
Q 009230 407 LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKC 486 (539)
Q Consensus 407 ~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~a 486 (539)
-..+++++++|.-+. +.+ ......+.+.|+.++.+.+.+||+++|.... +...+
T Consensus 144 l~~~p~llllDEPt~-------gLD-~~~~~~l~~~l~~~~~~~~~tili~tH~~~~------------------~~~~~ 197 (235)
T cd03299 144 LVVNPKILLLDEPFS-------ALD-VRTKEKLREELKKIRKEFGVTVLHVTHDFEE------------------AWALA 197 (235)
T ss_pred HHcCCCEEEECCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEecCHHH------------------HHHhC
Confidence 345889999993332 122 2345577788888888789999999993211 34567
Q ss_pred ceEEEEEe
Q 009230 487 DNGIVIHR 494 (539)
Q Consensus 487 D~vl~l~r 494 (539)
|.++.+..
T Consensus 198 d~i~~l~~ 205 (235)
T cd03299 198 DKVAIMLN 205 (235)
T ss_pred CEEEEEEC
Confidence 88888864
No 210
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.63 E-value=0.0012 Score=66.77 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+||||++.-++-.
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl 90 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM 90 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4555544 999999999999999999998877653
No 211
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00035 Score=65.08 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=92.4
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-C-----CeEE-E------EeCCCCHHHHHHHHHHHh
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHA-G-----WKFV-L------CSMENKVREHARKLLEKH 349 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g-----~~vl-~------~s~E~~~~~~~~r~~~~~ 349 (539)
.+..|+++.- +.+|+-+.|.|++|+||||++.=++- +.... | .+|. . |..|++..+-+ ++.+..
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaG-i~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi-~l~~~~ 116 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENI-YLRGLI 116 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhC-ccCCCCceEEEcceEehhhhcccCCCcccchHHHH-HHHHHH
Confidence 3455666655 99999999999999999999765543 22211 1 1222 1 22334433221 233444
Q ss_pred hCCCccccccCCCCCCCC-HHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHH-HHHHHcCCcEEEEccccccccCCC
Q 009230 350 IKKPFFEANYGGSAERMT-VEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAK-AAVLRHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 350 ~~~~~~~i~~~~~~~~l~-~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~-~~~~~~~~~~vvID~~~~l~~~~~ 427 (539)
.|....++... ++ -.++.++-+.+. .|+ ...+ .-...++. ..+....+++++||..+..-
T Consensus 117 ~G~~~~ei~~~-----~~eIieFaELG~fi~-~Pv-------ktYS-SGM~aRLaFsia~~~~pdILllDEvlavG---- 178 (249)
T COG1134 117 LGLTRKEIDEK-----VDEIIEFAELGDFID-QPV-------KTYS-SGMYARLAFSVATHVEPDILLLDEVLAVG---- 178 (249)
T ss_pred hCccHHHHHHH-----HHHHHHHHHHHHHhh-Cch-------hhcc-HHHHHHHHHhhhhhcCCCEEEEehhhhcC----
Confidence 45443333210 00 001112222221 111 0111 11222222 23344679999999665442
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+...+......+..+.++. .+||+++|+- +.|.+.||.++.|+.-+
T Consensus 179 ----D~~F~~K~~~rl~e~~~~~-~tiv~VSHd~------------------~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 179 ----DAAFQEKCLERLNELVEKN-KTIVLVSHDL------------------GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred ----CHHHHHHHHHHHHHHHHcC-CEEEEEECCH------------------HHHHHhcCeeEEEeCCE
Confidence 2345667778888887655 8899999942 23678999999998643
No 212
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.63 E-value=0.0017 Score=61.13 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998766543
No 213
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.63 E-value=0.0013 Score=67.31 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 444433 99999999999999999999887764
No 214
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.0012 Score=59.54 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=36.5
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
...++++.- ...|+++.|-|+.|+||||++.-++.-+.-. ...|..-++.
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~-~G~v~idg~d 65 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVD 65 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC-CceEEEeecc
Confidence 345666665 8999999999999999999998887655432 3455555544
No 215
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00051 Score=67.84 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=28.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 4555544 999999999999999999998877643
No 216
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.61 E-value=0.0014 Score=63.32 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=42.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|.... +...+|
T Consensus 162 ~~~p~llllDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~------------------~~~~~d 215 (252)
T TIGR03005 162 AMRPKVMLFDEVTS-------ALD-PELVGEVLNVIRRLASEHDLTMLLVTHEMGF------------------AREFAD 215 (252)
T ss_pred HcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH------------------HHHhcC
Confidence 35789999993332 222 2334577888888888889999999994221 345788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 216 ~i~~l~~ 222 (252)
T TIGR03005 216 RVCFFDK 222 (252)
T ss_pred EEEEEEC
Confidence 8888864
No 217
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.61 E-value=0.00088 Score=70.08 Aligned_cols=178 Identities=19% Similarity=0.161 Sum_probs=96.5
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC--CCHHHHH--HHHHHHhhCCCcccccc
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME--NKVREHA--RKLLEKHIKKPFFEANY 359 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E--~~~~~~~--~r~~~~~~~~~~~~i~~ 359 (539)
...+|++.- +++||...|.|.|||||||++.-++--. ...+..+.|..-+ ++..+.. +|-+.+...-++..+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SL-- 380 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSL-- 380 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCcccccccchhhhhhhheEEEEeCccccc--
Confidence 455666655 9999999999999999999988776433 2235566665533 3321111 111111111111111
Q ss_pred CCCCCCCCH----------------HHHHHHHHHhhcc----c-eeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Q 009230 360 GGSAERMTV----------------EEFEQGKAWLSNT----F-SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDP 418 (539)
Q Consensus 360 ~~~~~~l~~----------------~~~~~~~~~l~~~----~-~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~ 418 (539)
+++++- .+.++...++-+. . +.-++-++-+....+=...++.+ ...|+++|.|.
T Consensus 381 ---nPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARAL--a~~P~lli~DE 455 (539)
T COG1123 381 ---NPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARAL--ALEPKLLILDE 455 (539)
T ss_pred ---CccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHH--hcCCCEEEecC
Confidence 111211 1111111111110 0 01000001111122222233333 35799999994
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 419 YNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 419 ~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
-...+ +..-..+++.-|+.+-+++|++.++++|.-. .+.+.||.|.++++-+
T Consensus 456 p~SaL--------Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~------------------vV~~i~drv~vm~~G~ 507 (539)
T COG1123 456 PVSAL--------DVSVQAQVLNLLKDLQEELGLTYLFISHDLA------------------VVRYIADRVAVMYDGR 507 (539)
T ss_pred Ccccc--------CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH------------------HHHhhCceEEEEECCe
Confidence 44333 2234578999999999999999999999322 3678999999999755
No 218
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.61 E-value=0.00086 Score=65.26 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.|+.+.- +.+|+.+.|.|++|+|||||+.-++--
T Consensus 38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34554444 999999999999999999998877654
No 219
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.61 E-value=0.0013 Score=64.29 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877644
No 220
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.60 E-value=0.0018 Score=60.89 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=42.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...+|
T Consensus 147 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~------------------~~~~~~d 200 (214)
T cd03297 147 AAQPELLLLDEPFS-------ALD-RALRLQLLPELKQIKKNLNIPVIFVTHDLS------------------EAEYLAD 200 (214)
T ss_pred hcCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHHcCcEEEEEecCHH------------------HHHHhcC
Confidence 35789999993222 222 334567888888888888999999999422 1446788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|.+
T Consensus 201 ~i~~l~~ 207 (214)
T cd03297 201 RIVVMED 207 (214)
T ss_pred EEEEEEC
Confidence 8888864
No 221
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.60 E-value=0.0017 Score=67.95 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=49.9
Q ss_pred HHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhc
Q 009230 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 485 (539)
Q Consensus 406 ~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~ 485 (539)
+...+|+++|.|-=++. . +-..+.++++.|+.+.+++|+++++++|.- +-+++.
T Consensus 168 ALa~~P~LLIaDEPTTa-------L-Dvt~q~qIL~llk~l~~e~g~a~l~ITHDl------------------~Vva~~ 221 (539)
T COG1123 168 ALALKPKLLIADEPTTA-------L-DVTTQAQILDLLKDLQRELGMAVLFITHDL------------------GVVAEL 221 (539)
T ss_pred HHhCCCCEEEECCCccc-------c-CHHHHHHHHHHHHHHHHHcCcEEEEEcCCH------------------HHHHHh
Confidence 34568999999933322 2 234567899999999999999999999932 246789
Q ss_pred cceEEEEEeCC
Q 009230 486 CDNGIVIHRNR 496 (539)
Q Consensus 486 aD~vl~l~r~~ 496 (539)
||.|++|++-+
T Consensus 222 aDrv~Vm~~G~ 232 (539)
T COG1123 222 ADRVVVMYKGE 232 (539)
T ss_pred cCeEEEEECCE
Confidence 99999999855
No 222
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00057 Score=63.14 Aligned_cols=163 Identities=18% Similarity=0.250 Sum_probs=89.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
+.+|+++.|-|+.|+||||++..++-..-. ....|.|-.-+ .++.+.+++=+ +-++..+-. .+.|+.+|
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-~~G~I~~~G~dit~~p~~~r~r~Gi---~~VPegR~i----F~~LTVeE 97 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRP-RSGRIIFDGEDITGLPPHERARLGI---AYVPEGRRI----FPRLTVEE 97 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeeEEECCeecCCCCHHHHHhCCe---EeCcccccc----hhhCcHHH
Confidence 899999999999999999999887644322 23455554444 33444433321 122221111 12344333
Q ss_pred -H-----------------HHHH---HHhhccceeEeecCCCCC--CHHHHHHHHHHHHHHcCCcEEEEccccccccCCC
Q 009230 371 -F-----------------EQGK---AWLSNTFSLIRCENDSLP--SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 371 -~-----------------~~~~---~~l~~~~~~i~~~~~~~~--~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~ 427 (539)
+ ++++ -.|.++.. ..-+.. .-.+..+..+.+. ..|+++++| .+.
T Consensus 98 NL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~----~~aG~LSGGEQQMLAiaRALm--~~PklLLLD-------EPs 164 (237)
T COG0410 98 NLLLGAYARRDKEAQERDLEEVYELFPRLKERRN----QRAGTLSGGEQQMLAIARALM--SRPKLLLLD-------EPS 164 (237)
T ss_pred HHhhhhhcccccccccccHHHHHHHChhHHHHhc----CcccCCChHHHHHHHHHHHHh--cCCCEEEec-------CCc
Confidence 1 1111 11111100 000111 1223444444433 479999999 111
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
-+. ....+.++.+.++.+.++.+++|+++-||-.. .-..||...+|.+-+
T Consensus 165 ~GL-aP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~------------------Al~iaDr~yvle~Gr 214 (237)
T COG0410 165 EGL-APKIVEEIFEAIKELRKEGGMTILLVEQNARF------------------ALEIADRGYVLENGR 214 (237)
T ss_pred cCc-CHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH------------------HHHhhCEEEEEeCCE
Confidence 122 23567889999999999999999999995332 124778888887543
No 223
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.0027 Score=65.99 Aligned_cols=42 Identities=17% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHH-HhcCCeEEEEeCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMEN 336 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a-~~~g~~vl~~s~E~ 336 (539)
..|..+++.|++|+||||++..+|..++ ...|.+|++++++.
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999999999999887 44478999999875
No 224
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.0005 Score=75.41 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=80.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 372 (539)
+.+|+-..|.||||+|||||.+-+++..|.+ |.+++|+-.-.+ ..+...|+....-+.....+... ....|+..+.+
T Consensus 94 ~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k-gkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~eke 171 (1187)
T COG1110 94 LVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK-GKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKE 171 (1187)
T ss_pred HHcCCceEEEcCCCCchhHHHHHHHHHHHhc-CCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHH
Confidence 8889999999999999999999999999997 888887754433 56777777554422221111111 12367778888
Q ss_pred HHHHHhhcc-c-eeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 373 QGKAWLSNT-F-SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 373 ~~~~~l~~~-~-~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
++.+.+.+. + ++|. |..-+....+.+. .++.++||||+...++...
T Consensus 172 e~le~i~~gdfdIlit-------Ts~FL~k~~e~L~-~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 172 EALERIESGDFDILIT-------TSQFLSKRFEELS-KLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHHHHHhcCCccEEEE-------eHHHHHhhHHHhc-ccCCCEEEEccHHHHHhcc
Confidence 888888753 2 2331 1111222333333 3689999999988877543
No 225
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.59 E-value=0.0014 Score=61.85 Aligned_cols=174 Identities=15% Similarity=0.159 Sum_probs=90.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCccc---cc--c----CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFE---AN--Y----GGSA 363 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~~~~~~~---i~--~----~~~~ 363 (539)
+++|+.+.+.|+.|+||||.+--+.--+.- .+..|-.-..+-- ..+-..|-+...+|.-..- +. . ....
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I 125 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI 125 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH
Confidence 999999999999999999986655432222 2455555554421 2222233333333322110 00 0 0000
Q ss_pred CCCCHHHHHHHHHHhhccce---eEeecCCCCCCHHH-HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHH
Q 009230 364 ERMTVEEFEQGKAWLSNTFS---LIRCENDSLPSIKW-VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM 439 (539)
Q Consensus 364 ~~l~~~~~~~~~~~l~~~~~---~i~~~~~~~~~~~~-i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~ 439 (539)
..+.++++++-.+.+.+..- +++ .+....++.+ ....+ .+.--|+++++++|--+ + + -+-.....+
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeL-aaaLLh~p~VLfLDEpT-v------g-LDV~aq~~i 195 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAEL-AAALLHPPKVLFLDEPT-V------G-LDVNAQANI 195 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHH-HHHhcCCCcEEEecCCc-c------C-cchhHHHHH
Confidence 01233333332222221100 000 0111222222 11111 12334789999999221 1 1 122344567
Q ss_pred HHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 440 LTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 440 ~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
-+.|+....+++++|++++|.- +.|++.||.|+.++.-+
T Consensus 196 r~Flke~n~~~~aTVllTTH~~------------------~di~~lc~rv~~I~~Gq 234 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIF------------------DDIATLCDRVLLIDQGQ 234 (325)
T ss_pred HHHHHHHHHhhCceEEEEecch------------------hhHHHhhhheEEeeCCc
Confidence 7888899999999999999932 13788999999998866
No 226
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.59 E-value=0.0021 Score=61.10 Aligned_cols=33 Identities=30% Similarity=0.281 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 444443 999999999999999999998877644
No 227
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.59 E-value=0.0017 Score=61.55 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999998877754
No 228
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00065 Score=59.06 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.+..++|.|+||+|||+++..++..+... +.++.+++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhh
Confidence 36789999999999999999999887753 78888887643
No 229
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.59 E-value=0.001 Score=69.83 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 455544 999999999999999999998877644
No 230
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.59 E-value=0.0016 Score=66.23 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=32.4
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.
T Consensus 148 ~~p~lllLDEPts-------~LD-~~~~~~l~~~L~~l~~~~g~tiiivtH~ 191 (354)
T TIGR02142 148 SSPRLLLMDEPLA-------ALD-DPRKYEILPYLERLHAEFGIPILYVSHS 191 (354)
T ss_pred cCCCEEEEcCCCc-------CCC-HHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 5789999993332 222 2345678888888988889999999993
No 231
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=0.00081 Score=62.72 Aligned_cols=35 Identities=37% Similarity=0.580 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3444444 9999999999999999999988776543
No 232
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0015 Score=64.59 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~G 55 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNA 55 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4555554 99999999999999999999887764
No 233
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0021 Score=61.39 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3444443 999999999999999999998877643
No 234
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.58 E-value=0.0017 Score=65.54 Aligned_cols=44 Identities=11% Similarity=0.220 Sum_probs=33.0
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|--+.- .+ ......+++.|+++.++.+++||+++|.
T Consensus 157 ~~P~iLLlDEPts~-------LD-~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 157 SNPKVLLCDEATSA-------LD-PATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred hCCCEEEEeCCccc-------CC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 57899999933322 22 2345678888999999999999999993
No 235
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00076 Score=65.39 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=42.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+++||+++|... .+...+|
T Consensus 169 ~~~p~llllDEPt~-------~LD-~~~~~~l~~~L~~~~~~~~~tii~~sH~~~------------------~~~~~~d 222 (255)
T PRK11300 169 VTQPEILMLDEPAA-------GLN-PKETKELDELIAELRNEHNVTVLLIEHDMK------------------LVMGISD 222 (255)
T ss_pred hcCCCEEEEcCCcc-------CCC-HHHHHHHHHHHHHHHhhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 45799999993332 222 234556778888888777999999999322 1446789
Q ss_pred eEEEEEeC
Q 009230 488 NGIVIHRN 495 (539)
Q Consensus 488 ~vl~l~r~ 495 (539)
.++.|...
T Consensus 223 ~i~~l~~g 230 (255)
T PRK11300 223 RIYVVNQG 230 (255)
T ss_pred EEEEEECC
Confidence 88888753
No 236
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.58 E-value=0.00096 Score=64.60 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=41.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...+|
T Consensus 164 ~~~p~vlllDEP~~-------~LD-~~~~~~l~~~l~~~~~~~~~tii~vsH~~~------------------~~~~~~d 217 (253)
T TIGR02323 164 VTRPRLVFMDEPTG-------GLD-VSVQARLLDLLRGLVRDLGLAVIIVTHDLG------------------VARLLAQ 217 (253)
T ss_pred hcCCCEEEEcCCCc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhcC
Confidence 45899999993332 122 233456778888888888999999999422 1345778
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 218 ~~~~l~~ 224 (253)
T TIGR02323 218 RLLVMQQ 224 (253)
T ss_pred EEEEEEC
Confidence 8888864
No 237
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.0019 Score=66.08 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=26.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+-- +.+|+++.|.|++|+|||||+.-|+-
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3444433 99999999999999999999877663
No 238
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.58 E-value=0.0016 Score=62.96 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444444 999999999999999999998877643
No 239
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.57 E-value=0.00073 Score=64.48 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 999999999999999999998877643
No 240
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.57 E-value=0.0017 Score=66.12 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.
T Consensus 145 ~~p~llLLDEPts-------~LD-~~~~~~l~~~L~~l~~~~g~tii~vTHd 188 (352)
T PRK11144 145 TAPELLLMDEPLA-------SLD-LPRKRELLPYLERLAREINIPILYVSHS 188 (352)
T ss_pred cCCCEEEEcCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5789999993322 222 2334577888888988889999999994
No 241
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00058 Score=66.34 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=41.3
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +...||.
T Consensus 157 ~~p~lllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~------------------~~~~~d~ 210 (258)
T PRK13548 157 GPPRWLLLDEPTS-------ALD-LAHQHHVLRLARQLAHERGLAVIVVLHDLNL------------------AARYADR 210 (258)
T ss_pred CCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHHH------------------HHHhcCE
Confidence 4789999993332 222 2344567888888886678999999993221 3457788
Q ss_pred EEEEEeC
Q 009230 489 GIVIHRN 495 (539)
Q Consensus 489 vl~l~r~ 495 (539)
++.|.+.
T Consensus 211 i~~l~~G 217 (258)
T PRK13548 211 IVLLHQG 217 (258)
T ss_pred EEEEECC
Confidence 8877653
No 242
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.56 E-value=0.00084 Score=68.15 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-|+--
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl 51 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL 51 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3444433 899999999999999999998877754
No 243
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.56 E-value=0.0025 Score=59.73 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=82.4
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC----CCHHHHHHHHHHHhhCCCc---c
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKPF---F 355 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E----~~~~~~~~r~~~~~~~~~~---~ 355 (539)
+...+|++.- +..|+++++.|+|||||||.+.- ...+... ...-++|..| +++.++.+++-...-++.+ .
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkM-INrLiep-t~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~ 90 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKM-INRLIEP-TSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHL 90 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHH-HhcccCC-CCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCc
Confidence 4455666655 99999999999999999998654 3344433 3334445444 4466676665322222221 1
Q ss_pred ccccCC----CCCCCCHHHHHHHHHHhhcc----c-eeE-eecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccC
Q 009230 356 EANYGG----SAERMTVEEFEQGKAWLSNT----F-SLI-RCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ 425 (539)
Q Consensus 356 ~i~~~~----~~~~l~~~~~~~~~~~l~~~----~-~~i-~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~ 425 (539)
.+..+. .-..++.+++++-.+.|-.. + .|. ++..+-+....+=...++.++ .++.++..|-=...+.+
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALA--adP~ilLMDEPFgALDp 168 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALA--ADPPILLMDEPFGALDP 168 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHh--cCCCeEeecCCccccCh
Confidence 111000 00123333333222222110 1 010 000011111223334445444 36889999933222211
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 426 RPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 426 ~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
-++ .++-..++++-++++.+||+|+|
T Consensus 169 ----I~R----~~lQ~e~~~lq~~l~kTivfVTH 194 (309)
T COG1125 169 ----ITR----KQLQEEIKELQKELGKTIVFVTH 194 (309)
T ss_pred ----hhH----HHHHHHHHHHHHHhCCEEEEEec
Confidence 122 23456677788999999999999
No 244
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.56 E-value=0.0016 Score=59.33 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|..+.- ++++.+|.+.||+|||||||+..+=
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHHH
Confidence 3444444 9999999999999999999988654
No 245
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.56 E-value=0.0019 Score=62.82 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=41.9
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|.... +...||.
T Consensus 169 ~~p~llllDEPt~-------~LD-~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~------------------~~~~~d~ 222 (262)
T PRK09984 169 QQAKVILADEPIA-------SLD-PESARIVMDTLRDINQNDGITVVVTLHQVDY------------------ALRYCER 222 (262)
T ss_pred cCCCEEEecCccc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH------------------HHHhCCE
Confidence 5789999993322 222 3445678888888888789999999994321 3457788
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|.+
T Consensus 223 i~~l~~ 228 (262)
T PRK09984 223 IVALRQ 228 (262)
T ss_pred EEEEEC
Confidence 888864
No 246
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.55 E-value=0.0018 Score=64.50 Aligned_cols=41 Identities=24% Similarity=0.299 Sum_probs=36.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.+|+++++.|++|+||||++..+|..+... |.+|++++.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCc
Confidence 467899999999999999999999988764 89999999875
No 247
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0024 Score=65.67 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl 77 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL 77 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 454444 999999999999999999998877644
No 248
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=0.0007 Score=66.37 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=27.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 20 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 20 ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3454444 99999999999999999999887764
No 249
>PRK12377 putative replication protein; Provisional
Probab=97.55 E-value=0.00075 Score=64.61 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=33.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.-++|.|+||+|||.|+..++..+..+ |.+|+|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH
Confidence 467899999999999999999998875 9999999864
No 250
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.54 E-value=0.00045 Score=67.41 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444444 999999999999999999998877644
No 251
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.00091 Score=64.87 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=38.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL 345 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~ 345 (539)
+..++-++|.|+||+|||.|+..++..++.+ |++|+|++. .+++..+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-g~~v~f~~~----~~L~~~l 149 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIEN-GWRVLFTRT----TDLVQKL 149 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHc-CCceeeeeH----HHHHHHH
Confidence 4567789999999999999999999988875 999999984 3454444
No 252
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.53 E-value=0.00092 Score=63.54 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred cccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 3444444 9999999999999999999988776543
No 253
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.53 E-value=0.00072 Score=62.94 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444443 999999999999999999998877654
No 254
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.53 E-value=0.00086 Score=63.91 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=42.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|.-+.- .+ ......+.+.|++++++.+.+||+++|.-. .+...+|
T Consensus 147 ~~~p~illlDEPt~~-------LD-~~~~~~l~~~l~~~~~~~~~tii~~sH~~~------------------~~~~~~d 200 (230)
T TIGR03410 147 VTRPKLLLLDEPTEG-------IQ-PSIIKDIGRVIRRLRAEGGMAILLVEQYLD------------------FARELAD 200 (230)
T ss_pred hcCCCEEEecCCccc-------CC-HHHHHHHHHHHHHHHHcCCcEEEEEeCCHH------------------HHHHhCC
Confidence 357899999933322 22 234456777788887777899999999321 1456788
Q ss_pred eEEEEEeC
Q 009230 488 NGIVIHRN 495 (539)
Q Consensus 488 ~vl~l~r~ 495 (539)
.++.+...
T Consensus 201 ~v~~l~~g 208 (230)
T TIGR03410 201 RYYVMERG 208 (230)
T ss_pred EEEEEECC
Confidence 88888643
No 255
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.00064 Score=62.46 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=77.8
Q ss_pred cCCCcE-EEEEcCCCCChhHHHHHHHHHHHHh----cCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCH
Q 009230 294 VLPGEL-TIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTV 368 (539)
Q Consensus 294 l~~G~l-~~i~G~~G~GKT~~~~~la~~~a~~----~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~ 368 (539)
...|.+ ++|.|||++||||++..+|..++.. .+.+|+.+. .+.+ +. +..-|++...+
T Consensus 133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiD--ersE-Ia----g~~~gvpq~~~----------- 194 (308)
T COG3854 133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIID--ERSE-IA----GCLNGVPQHGR----------- 194 (308)
T ss_pred HhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEe--ccch-hh----ccccCCchhhh-----------
Confidence 567778 8999999999999999999998875 357788775 2222 22 22333332211
Q ss_pred HHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 009230 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQ 448 (539)
Q Consensus 369 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~ 448 (539)
. .+.-+. ++.+...-++ .+++.+-|.++|+|.+-. ..+ ...+.. |-
T Consensus 195 ---g-------~R~dVl----d~cpk~~gmm----maIrsm~PEViIvDEIGt--------~~d---~~A~~t-----a~ 240 (308)
T COG3854 195 ---G-------RRMDVL----DPCPKAEGMM----MAIRSMSPEVIIVDEIGT--------EED---ALAILT-----AL 240 (308)
T ss_pred ---h-------hhhhhc----ccchHHHHHH----HHHHhcCCcEEEEecccc--------HHH---HHHHHH-----HH
Confidence 1 111111 2333333333 345567899999993321 111 112222 33
Q ss_pred HhCcEEEEEec-CCCCCCCCCCCCCcccccc
Q 009230 449 HHACHVWFVAH-PRQLHNWVGEPPNLYDISG 478 (539)
Q Consensus 449 ~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~g 478 (539)
+.|+-++.++| +.-.+- .++|++.|+-+
T Consensus 241 ~~GVkli~TaHG~~iedl--~krp~lkdlv~ 269 (308)
T COG3854 241 HAGVKLITTAHGNGIEDL--IKRPTLKDLVE 269 (308)
T ss_pred hcCcEEEEeeccccHHHh--hcChhHHHHHh
Confidence 68999999999 654432 46788877664
No 256
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.51 E-value=0.0018 Score=61.50 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=27.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444433 9999999999999999999998877554
No 257
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.001 Score=67.02 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=33.6
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
..+++++++|--+. +.+ .....++++.|+++.++.+++||+++|.
T Consensus 174 ~~~P~llilDEPts-------~LD-~~~~~~i~~lL~~l~~~~g~tii~itHd 218 (330)
T PRK15093 174 ANQPRLLIADEPTN-------AME-PTTQAQIFRLLTRLNQNNNTTILLISHD 218 (330)
T ss_pred HCCCCEEEEeCCCC-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 45799999993332 222 3345678888899988899999999993
No 258
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=0.0018 Score=63.47 Aligned_cols=33 Identities=24% Similarity=0.135 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444444 999999999999999999998876643
No 259
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.50 E-value=0.0007 Score=65.71 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 899999999999999999998877643
No 260
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.50 E-value=0.002 Score=61.83 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 899999999999999999998877754
No 261
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.50 E-value=0.0023 Score=60.56 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 999999999999999999998877643
No 262
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.50 E-value=0.0012 Score=72.66 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=29.5
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34555554 9999999999999999999988877543
No 263
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.00073 Score=66.29 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=27.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~G 50 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG 50 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3444444 99999999999999999999887764
No 264
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.50 E-value=0.0031 Score=59.64 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444433 999999999999999999998877644
No 265
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=0.0016 Score=64.17 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998877643
No 266
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.49 E-value=0.0049 Score=59.23 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998887654
No 267
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00075 Score=66.34 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=33.4
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|.-+. +.+ ......+++.|+.++++.+.+||+++|.
T Consensus 156 ~~~p~lLlLDEPt~-------~LD-~~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 156 AMRPKIIILDEATS-------MLD-PEGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred HcCCCEEEEECCcc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35789999993332 222 2345678888999988889999999993
No 268
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.49 E-value=0.0015 Score=70.55 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=28.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555544 9999999999999999999988777543
No 269
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.0008 Score=64.33 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444443 9999999999999999999988776443
No 270
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.49 E-value=0.0011 Score=62.84 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3444443 99999999999999999999876653
No 271
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.49 E-value=0.002 Score=59.76 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=28.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCeE
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKF 329 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~v 329 (539)
+..|++++|+|++|+|||||+..++..... +.|.+|
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v 58 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPV 58 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEE
Confidence 777899999999999999999999866532 236544
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.49 E-value=0.0054 Score=63.63 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+++++|++|+||||.+..+|..+..+ |++|++++.+.-
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~kV~lV~~D~~ 134 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK-GLKVGLVAADTY 134 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEecCCCC
Confidence 3589999999999999999999888764 999999999853
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=97.49 E-value=0.0017 Score=70.52 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=43.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|-=+ .+.+ ......+++.|++++++.+.+||+++|... .+.+.||
T Consensus 469 ~~~p~llLLDEPt-------~~LD-~~~~~~l~~~l~~l~~~~g~tviivsHD~~------------------~~~~~aD 522 (590)
T PRK13409 469 SRDADLYLLDEPS-------AHLD-VEQRLAVAKAIRRIAEEREATALVVDHDIY------------------MIDYISD 522 (590)
T ss_pred hcCCCEEEEeCCc-------cCCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------HHHHhCC
Confidence 3579999999222 1222 344567888999999988999999999321 1346788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.++.
T Consensus 523 rvivl~~ 529 (590)
T PRK13409 523 RLMVFEG 529 (590)
T ss_pred EEEEEcC
Confidence 8888853
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.48 E-value=0.0016 Score=69.58 Aligned_cols=34 Identities=26% Similarity=0.203 Sum_probs=27.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~ 52 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE 52 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555544 999999999999999999998877644
No 275
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.48 E-value=0.0011 Score=66.34 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4565554 999999999999999999998877643
No 276
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00092 Score=59.58 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999999887764
No 277
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.0012 Score=63.56 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=28.7
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.+..++++.- ++.|+++.+.|++|+||||++.-||
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIA 49 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIA 49 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHh
Confidence 4555665544 9999999999999999999988665
No 278
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0068 Score=63.58 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=37.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E~ 336 (539)
+..|++++|.|++|+||||++..++..++..+ +.+|.+++.+.
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 67799999999999999999999999887753 47899999864
No 279
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00062 Score=65.24 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=27.4
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3444444 999999999999999999998876643
No 280
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.45 E-value=0.00067 Score=58.15 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=25.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
++|.|+||+|||+++..++..+ +.+++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----GFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----TSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----cccccccccc
Confidence 4799999999999988877663 6777766654
No 281
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.0024 Score=59.00 Aligned_cols=32 Identities=38% Similarity=0.607 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence 444443 99999999999999999999887773
No 282
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.45 E-value=0.0012 Score=63.39 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=28.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 4555544 9999999999999999999988777543
No 283
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0036 Score=60.17 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998877643
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.44 E-value=0.0016 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+.+.|.|++|+|||||+.-++-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 99999999999999999999876654
No 285
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=97.43 E-value=0.0014 Score=71.84 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-|+.+.+ +.+|+++.|.|++|+|||||+.-++-.
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~ 74 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFR 74 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4666777 999999999999999999998877654
No 286
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.43 E-value=0.0019 Score=64.27 Aligned_cols=181 Identities=18% Similarity=0.224 Sum_probs=96.8
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC-CC---HHH--HHHHHHHHhhCCCcccc
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NK---VRE--HARKLLEKHIKKPFFEA 357 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E-~~---~~~--~~~r~~~~~~~~~~~~i 357 (539)
+...|.+-- +++|+...|.|.+||||||+.+.+..-+..+ | . ++|..+ .+ ..+ -.+|-+.....-++..+
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~-I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-E-IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-e-EEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 344455544 9999999999999999999999887655442 2 2 333333 11 111 11121222222222211
Q ss_pred ccC---------C---CCCCCCHHHHH-HHHHHhhcc---c-eeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Q 009230 358 NYG---------G---SAERMTVEEFE-QGKAWLSNT---F-SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420 (539)
Q Consensus 358 ~~~---------~---~~~~l~~~~~~-~~~~~l~~~---~-~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~ 420 (539)
... + ....++..|.. ++.+.+.+- + ..-++..+-+....+=++.++.++ .++++|++|.=+
T Consensus 377 sPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli--LkP~~i~LDEPT 454 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI--LKPELILLDEPT 454 (534)
T ss_pred CcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh--cCCcEEEecCCc
Confidence 100 0 01234443332 223333220 0 000000111222233334444333 478999999222
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+.-+...+.++++-|+.|-+++|..-++++|.-+ .+-..||.||.+..-+
T Consensus 455 --------SALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~------------------VvrAl~~~viVm~~Gk 504 (534)
T COG4172 455 --------SALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA------------------VVRALCHRVIVMRDGK 504 (534)
T ss_pred --------hHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH------------------HHHHhhceEEEEeCCE
Confidence 2223455678999999999999999999999222 2446889999987644
No 287
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.43 E-value=0.0027 Score=59.71 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998877644
No 288
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.42 E-value=0.0023 Score=59.79 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998877643
No 289
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.42 E-value=0.0017 Score=64.51 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3454544 999999999999999999998877643
No 290
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.42 E-value=0.00088 Score=66.52 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=41.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
|+++.. ..++.++.|.|+||+|||||+..++..+... |.+|.+++++..
T Consensus 24 ~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~-~~~v~~i~~D~~ 73 (300)
T TIGR00750 24 LDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRR-GLKVAVIAVDPS 73 (300)
T ss_pred HHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 444444 6778999999999999999999999988775 999999998854
No 291
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.42 E-value=0.0015 Score=60.24 Aligned_cols=32 Identities=28% Similarity=0.273 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444443 99999999999999999999876654
No 292
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.001 Score=63.68 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 444433 8999999999999999999988877543
No 293
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.41 E-value=0.0017 Score=58.90 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999998877654
No 294
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0017 Score=58.77 Aligned_cols=33 Identities=30% Similarity=0.467 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 444433 999999999999999999998877644
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=97.41 E-value=0.00042 Score=53.30 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHh---cCCeEEEEeCCCCH-HHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENKV-REHARKL 345 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~---~g~~vl~~s~E~~~-~~~~~r~ 345 (539)
.+.+.+|.|+||+|||+.+.+.+.+.... .+.+|++++.--.. +++.+|+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 35688899999999999999998888752 16789999877443 3444554
No 296
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.41 E-value=0.0025 Score=61.63 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
+.+|+++.|.|++|+|||||+.-++--..
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 78999999999999999999877665543
No 297
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.40 E-value=0.0027 Score=63.49 Aligned_cols=38 Identities=24% Similarity=0.614 Sum_probs=33.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
|.++.|.||+||||++..++..+....|++|.+++.+.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccc
Confidence 46899999999999999999888754599999999884
No 298
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.0037 Score=60.84 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=48.6
Q ss_pred HHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhc
Q 009230 406 VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINK 485 (539)
Q Consensus 406 ~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~ 485 (539)
+....++++|=|-=++- -+...+.++++-|+++.+++|.++++++|.=+ -+.+.
T Consensus 167 ala~~P~LlIADEPTTA--------LDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~------------------vva~~ 220 (316)
T COG0444 167 ALALNPKLLIADEPTTA--------LDVTVQAQILDLLKELQREKGTALILITHDLG------------------VVAEI 220 (316)
T ss_pred HHhCCCCEEEeCCCcch--------hhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHh
Confidence 44568999999932221 23345678999999999999999999999322 35678
Q ss_pred cceEEEEEeCC
Q 009230 486 CDNGIVIHRNR 496 (539)
Q Consensus 486 aD~vl~l~r~~ 496 (539)
||.|.+++.-+
T Consensus 221 aDri~VMYaG~ 231 (316)
T COG0444 221 ADRVAVMYAGR 231 (316)
T ss_pred cceEEEEECcE
Confidence 99999888744
No 299
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.0017 Score=63.96 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=28.2
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~ 57 (282)
T PRK13640 22 ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL 57 (282)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 3444444 9999999999999999999988876443
No 300
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.38 E-value=0.002 Score=61.90 Aligned_cols=34 Identities=38% Similarity=0.613 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444 999999999999999999998877754
No 301
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.003 Score=60.65 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 19 l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444433 9999999999999999999988777543
No 302
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.38 E-value=0.003 Score=69.47 Aligned_cols=44 Identities=9% Similarity=0.221 Sum_probs=33.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|--+. +. +.....++++.|+.++++++.+||+++|.
T Consensus 480 ~~p~llllDEPts-------~L-D~~~~~~i~~ll~~l~~~~g~tvi~isHd 523 (623)
T PRK10261 480 LNPKVIIADEAVS-------AL-DVSIRGQIINLLLDLQRDFGIAYLFISHD 523 (623)
T ss_pred cCCCEEEEeCCcc-------cC-CHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 5899999993322 22 23445678888899988899999999993
No 303
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.0071 Score=58.83 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=42.2
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|+.++++.+.+||+++|... .+...||.
T Consensus 167 ~~p~vllLDEP~~-------~LD-~~~~~~l~~~l~~l~~~~~~tiiivsH~~~------------------~i~~~~d~ 220 (261)
T PRK14258 167 VKPKVLLMDEPCF-------GLD-PIASMKVESLIQSLRLRSELTMVIVSHNLH------------------QVSRLSDF 220 (261)
T ss_pred cCCCEEEEeCCCc-------cCC-HHHHHHHHHHHHHHHHhCCCEEEEEECCHH------------------HHHHhcCE
Confidence 5789999993332 122 334556778888887777899999999322 24578899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 221 i~~l~~ 226 (261)
T PRK14258 221 TAFFKG 226 (261)
T ss_pred EEEEcc
Confidence 999875
No 304
>PF05729 NACHT: NACHT domain
Probab=97.36 E-value=0.0018 Score=57.82 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHh
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEH 324 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~ 324 (539)
+.+|.|.||+|||+++..++..++.+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 68899999999999999999999886
No 305
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.0035 Score=61.05 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
-++|.|++|+|||.|+..++..+..+ |.+|+|++.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~~ 150 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVNF 150 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEH
Confidence 47899999999999999999998876 999999983
No 306
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.36 E-value=0.0043 Score=63.08 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=27.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--.
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~ 43 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI 43 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 444444 9999999999999999999988776443
No 307
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.013 Score=56.82 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+|+.+++.|++|+|||+++..++..+..+ +.+|.+++.+-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~-~~~v~~i~~D~~ 114 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHS 114 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEecCCC
Confidence 67899999999999999999999887764 899999998854
No 308
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0063 Score=66.82 Aligned_cols=114 Identities=13% Similarity=0.117 Sum_probs=68.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHH--HHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENKVREHA--RKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~~~~~~~--~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
+.+|+++++.|++|+||||.+..++......+| .+|.+++.+-..--.. -+..+...+++.... .++++
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~--------~~~~~ 253 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAV--------KDAAD 253 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcccc--------CCHHH
Confidence 456889999999999999999999988765556 5899999885321111 133455566665422 35666
Q ss_pred HHHHHHHhhcc-ceeEeecCCC-CCCHHHHHHHHHHHHHHcC--CcEEEEc
Q 009230 371 FEQGKAWLSNT-FSLIRCENDS-LPSIKWVLDLAKAAVLRHG--VRGLVID 417 (539)
Q Consensus 371 ~~~~~~~l~~~-~~~i~~~~~~-~~~~~~i~~~i~~~~~~~~--~~~vvID 417 (539)
+.++.+.+.+. .++| |..+ ++.-..+.+.+..+..... -.++|+|
T Consensus 254 l~~al~~~~~~D~VLI--DTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLs 302 (767)
T PRK14723 254 LRFALAALGDKHLVLI--DTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLN 302 (767)
T ss_pred HHHHHHHhcCCCEEEE--eCCCCCccCHHHHHHHHHHhccCCCCeEEEEEC
Confidence 77766666654 3344 3222 2222345555554433222 2467777
No 309
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.0016 Score=61.99 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3444444 9999999999999999999988887543
No 310
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.35 E-value=0.0015 Score=62.14 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=28.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 29 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555544 999999999999999999998877644
No 311
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.0036 Score=60.86 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444443 999999999999999999999888754
No 312
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.35 E-value=0.0038 Score=55.92 Aligned_cols=31 Identities=39% Similarity=0.460 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH 324 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~ 324 (539)
+..+.+++|.|+.|+|||+++..++......
T Consensus 18 ~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~ 48 (162)
T cd03227 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGA 48 (162)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3444699999999999999999988887765
No 313
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0041 Score=60.85 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=41.5
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+. +.+ ......+.+.|++++++.+.+||+++|... .+...||.
T Consensus 171 ~~p~lllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~~~~tviiisH~~~------------------~~~~~~d~ 224 (272)
T PRK13547 171 QPPRYLLLDEPTA-------ALD-LAHQHRLLDTVRRLARDWNLGVLAIVHDPN------------------LAARHADR 224 (272)
T ss_pred CCCCEEEEcCccc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEECCHH------------------HHHHhCCE
Confidence 4789999993322 122 234456778888888878999999999322 13457788
Q ss_pred EEEEEeC
Q 009230 489 GIVIHRN 495 (539)
Q Consensus 489 vl~l~r~ 495 (539)
++.|.+.
T Consensus 225 i~~l~~G 231 (272)
T PRK13547 225 IAMLADG 231 (272)
T ss_pred EEEEECC
Confidence 8888653
No 314
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.35 E-value=0.012 Score=57.45 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=27.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 35 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444433 9999999999999999999988877543
No 315
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00099 Score=59.97 Aligned_cols=142 Identities=18% Similarity=0.118 Sum_probs=89.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGK 375 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 375 (539)
.|.|.+++|+-++|||+-+++-+.+.... |.+|+.|..+.+.+--... ++...|.+...
T Consensus 3 ~g~l~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~iD~R~~~~~-V~Sr~G~~~~A------------------- 61 (201)
T COG1435 3 MGWLEFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAIDTRYGVGK-VSSRIGLSSEA------------------- 61 (201)
T ss_pred eEEEEEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEecccccccccce-eeeccCCcccc-------------------
Confidence 57899999999999999999999998886 9999999988655422111 12222222111
Q ss_pred HHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEE
Q 009230 376 AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVW 455 (539)
Q Consensus 376 ~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi 455 (539)
..| . +-.++.+.+........+++|+||-. |.+. .+++..|.++|.++|++|+
T Consensus 62 -------~~i----~---~~~~i~~~i~~~~~~~~~~~v~IDEa-QF~~------------~~~v~~l~~lad~lgi~Vi 114 (201)
T COG1435 62 -------VVI----P---SDTDIFDEIAALHEKPPVDCVLIDEA-QFFD------------EELVYVLNELADRLGIPVI 114 (201)
T ss_pred -------eec----C---ChHHHHHHHHhcccCCCcCEEEEehh-HhCC------------HHHHHHHHHHHhhcCCEEE
Confidence 112 1 23445555544333333789999933 3221 2577888999999999999
Q ss_pred EEecCCCCCCCCCCCCCcccccccccchhccceEEEEE
Q 009230 456 FVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493 (539)
Q Consensus 456 ~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~ 493 (539)
+-.=...= .-.-+.||..+-..||.+.-|.
T Consensus 115 ~~GL~~DF--------rgepFe~s~~Lla~ADkv~kL~ 144 (201)
T COG1435 115 CYGLDTDF--------RGEPFEGSKYLLAIADKVTKLK 144 (201)
T ss_pred Eecccccc--------ccCCCccHHHHHHHHHHHHHHH
Confidence 85431111 1122557777778888766443
No 316
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.34 E-value=0.0039 Score=58.22 Aligned_cols=183 Identities=15% Similarity=0.147 Sum_probs=96.6
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC----CCHHHHHHHHHHHhhCCC--ccc
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME----NKVREHARKLLEKHIKKP--FFE 356 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E----~~~~~~~~r~~~~~~~~~--~~~ 356 (539)
|+..+|+..- +++|+++.|.||.|+||||+..-+.-. ..-....|. |..+ +++.++.++=++.-.... +..
T Consensus 16 Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-~~P~~G~v~-~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-YKPSSGTVI-FRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-ccCCCceEE-ECCcccCCCCHHHHHhccceeecccccccCC
Confidence 5667777766 999999999999999999985543322 222233443 4444 566665443221111000 000
Q ss_pred ----------------cccCCCCCCC--CHHH-HHHHHHHhhcccee-EeecCCCCCCH--HHHHHHHHHHHHHcCCcEE
Q 009230 357 ----------------ANYGGSAERM--TVEE-FEQGKAWLSNTFSL-IRCENDSLPSI--KWVLDLAKAAVLRHGVRGL 414 (539)
Q Consensus 357 ----------------i~~~~~~~~l--~~~~-~~~~~~~l~~~~~~-i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~v 414 (539)
+...-..... .+.+ .+++.++|..--+. .....-+..+- ...++.++.++ .+|+++
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa--~~P~lL 171 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA--TQPKLL 171 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh--cCCCEE
Confidence 0000000001 1111 23344444321000 00001111221 22334444333 579999
Q ss_pred EEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 415 VIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 415 vID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
++|--+ .+.+. .+..++...++++.++.+++|+++=|.-+ -+.+.||.|+.|..
T Consensus 172 LLDEPa-------AGln~-~e~~~l~~~i~~i~~~~g~tillIEHdM~------------------~Vm~l~dri~Vl~~ 225 (250)
T COG0411 172 LLDEPA-------AGLNP-EETEELAELIRELRDRGGVTILLIEHDMK------------------LVMGLADRIVVLNY 225 (250)
T ss_pred EecCcc-------CCCCH-HHHHHHHHHHHHHHhcCCcEEEEEEeccH------------------HHhhhccEEEeccC
Confidence 999221 23333 34567888888888889999999999422 24579999999987
Q ss_pred CC
Q 009230 495 NR 496 (539)
Q Consensus 495 ~~ 496 (539)
-+
T Consensus 226 G~ 227 (250)
T COG0411 226 GE 227 (250)
T ss_pred Cc
Confidence 65
No 317
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.34 E-value=0.0029 Score=59.05 Aligned_cols=33 Identities=36% Similarity=0.520 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 444433 999999999999999999998877654
No 318
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.33 E-value=0.0053 Score=59.15 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 999999999999999999998877653
No 319
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.33 E-value=0.0037 Score=59.71 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
...+|.|+||+|||.++..++..+..+ |.+|+|++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~-g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLR-GKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEH
Confidence 368899999999999999999998885 999999963
No 320
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.32 E-value=0.00095 Score=66.49 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=36.4
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQ 462 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~ 462 (539)
..++.+.++|-+...+. + .....+++.|.++|++.++++++++|+..
T Consensus 523 aerpn~~~iDEF~AhLD-------~-~TA~rVArkiselaRe~giTlivvThrpE 569 (593)
T COG2401 523 AERPNVLLIDEFAAHLD-------E-LTAVRVARKISELAREAGITLIVVTHRPE 569 (593)
T ss_pred hcCCCcEEhhhhhhhcC-------H-HHHHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 35789999996665542 2 23457899999999999999999999543
No 321
>PLN03211 ABC transporter G-25; Provisional
Probab=97.31 E-value=0.0021 Score=70.78 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=29.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-|+.+.. +++|+++.|.|++|+|||||+.-++-.
T Consensus 83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~ 117 (659)
T PLN03211 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGR 117 (659)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4666666 999999999999999999998877644
No 322
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.31 E-value=0.0011 Score=63.96 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444433 999999999999999999998877643
No 323
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.31 E-value=0.0085 Score=64.54 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=28.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 16 l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 444443 9999999999999999999998887653
No 324
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.31 E-value=0.0087 Score=60.33 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHH-HhcCCeEEEEeCCCC----HHHHHHHHHHHhhCCCccccccCCCCCCCCHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSMENK----VREHARKLLEKHIKKPFFEANYGGSAERMTVE 369 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a-~~~g~~vl~~s~E~~----~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~ 369 (539)
.++.++++.||+|+||||-+..+|+... .....+|.++|++-- .+++ +..+...|+|+.-. .++.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL--k~Ya~im~vp~~vv--------~~~~ 270 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL--KTYADIMGVPLEVV--------YSPK 270 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH--HHHHHHhCCceEEe--------cCHH
Confidence 4478999999999999999999999988 333689999999942 3333 44577788887643 4567
Q ss_pred HHHHHHHHhhcc
Q 009230 370 EFEQGKAWLSNT 381 (539)
Q Consensus 370 ~~~~~~~~l~~~ 381 (539)
++..+...+.+.
T Consensus 271 el~~ai~~l~~~ 282 (407)
T COG1419 271 ELAEAIEALRDC 282 (407)
T ss_pred HHHHHHHHhhcC
Confidence 777776666654
No 325
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.01 Score=55.90 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 27 FGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 343433 999999999999999999998877654
No 326
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.30 E-value=0.004 Score=58.87 Aligned_cols=59 Identities=12% Similarity=0.317 Sum_probs=41.4
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|.-+.- .+ ......+...|+.++++.+.+||+++|... +...||.
T Consensus 158 ~~p~illlDEP~~~-------LD-~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-------------------~~~~~d~ 210 (220)
T TIGR02982 158 HRPKLVLADEPTAA-------LD-SKSGRDVVELMQKLAREQGCTILIVTHDNR-------------------ILDVADR 210 (220)
T ss_pred cCCCEEEEeCCCCc-------CC-HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-------------------HHhhCCE
Confidence 57899999933322 22 234557888888888878999999999421 1247888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 211 v~~l~~ 216 (220)
T TIGR02982 211 IVHMED 216 (220)
T ss_pred EEEEEC
Confidence 888864
No 327
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.30 E-value=6.6e-05 Score=70.26 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=81.8
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh---cCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~---~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
.++.|...+..-+. +....-++|+|.||+|||+++..++..++.. ....+..+.+-.. ++ +...+.+.
T Consensus 19 ~i~~g~~~~~~~v~~dl~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~--~l-----~~~~~~~~ 91 (205)
T PF01580_consen 19 PIPVGVDQRGDPVVLDLKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS--DL-----APLADLPH 91 (205)
T ss_dssp EEEEEEETTS-EEEEEGGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS--CC-----GGGTT-TT
T ss_pred EEEecccCCCCEEEEEcCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc--cc-----chhhhhhh
Confidence 45555554333332 5555578899999999999999999999883 2556666665432 11 11111111
Q ss_pred cccccCCCCCCCCHHHHHHHHHH----hhccceeEeecCCCCCCHHHHHHHHHHHHH---------HcCCcEEEEccccc
Q 009230 355 FEANYGGSAERMTVEEFEQGKAW----LSNTFSLIRCENDSLPSIKWVLDLAKAAVL---------RHGVRGLVIDPYNE 421 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~----l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~---------~~~~~~vvID~~~~ 421 (539)
... . ...-+.++..++.++ +..+.-++. ..+..+++........+.. ....-+++||.+..
T Consensus 92 ~~~--~--~~~~~~~~~~~~l~~l~~em~~R~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~iDe~~~ 165 (205)
T PF01580_consen 92 VAA--V--AVATDPEEILRLLEELVEEMERRQALLR--EAGVRNIDDYNEERGELPDDIFADPWLKELPPIFIVIDEFAA 165 (205)
T ss_dssp BSS-----S-B-SHHHHHHHHHHHHHHHHHHHHHHH--HCT-SSHHHHHHHHHHHHHTT----B-----EEEEEECTHHH
T ss_pred hcc--c--cccccHHHHHHHHHHHHHHHHHHHHHHH--HcCccchhhHHHHhhhhccccccccccccCchHHHHhhhHHH
Confidence 100 0 001234444433322 222222221 1233334432222222111 23456889999998
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 422 LDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 422 l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
+..... ......+.+.+..|-+.++..||++|+.+|
T Consensus 166 l~~~~~--~~~~~~~~~~l~~i~~~gR~~Gi~li~~~Q 201 (205)
T PF01580_consen 166 LRDSAP--DDSKKEIMDLLARIARKGRAAGIHLILATQ 201 (205)
T ss_dssp HHHHHH--HH----HHHHHHHHHHHCGGGTEEEEEEES
T ss_pred HHhhcc--hhhHHHHHHHHHHHHHHHHhcCEEEEEEeC
Confidence 875321 011234566777777778899999999999
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.30 E-value=0.0018 Score=70.20 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=80.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
-....+++|.+|.|.||||++.|++. .+. .+..|.|+|++++ +.+++.++++.....- +.+.++-
T Consensus 34 ~~~~RL~li~APAGfGKttl~aq~~~-~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~----------p~~~~~a 101 (894)
T COG2909 34 ANDYRLILISAPAGFGKTTLLAQWRE-LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQAT----------PTLGDEA 101 (894)
T ss_pred CCCceEEEEeCCCCCcHHHHHHHHHH-hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhC----------ccccHHH
Confidence 44557999999999999999999988 444 3899999999866 6677788876543221 1222221
Q ss_pred HHHHHHHhhccceeEeecCCCCCCHHHHHHHH-HHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLA-KAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 371 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i-~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
. .+..+- ...++..+.+.+ ..+..-.++=.+|||+|.-+-.+ .+.+.++.|-+-+ -
T Consensus 102 ~-----~l~q~~--------~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~---------~l~~~l~fLl~~~-P 158 (894)
T COG2909 102 Q-----TLLQKH--------QYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDP---------ALHEALRFLLKHA-P 158 (894)
T ss_pred H-----HHHHhc--------ccccHHHHHHHHHHHHHhhcCceEEEeccccccCcc---------cHHHHHHHHHHhC-C
Confidence 1 222221 122344444333 34445567889999988755321 1333333332221 1
Q ss_pred hCcEEEEEecCC
Q 009230 450 HACHVWFVAHPR 461 (539)
Q Consensus 450 ~~i~vi~~~q~r 461 (539)
-|++.|+++.++
T Consensus 159 ~~l~lvv~SR~r 170 (894)
T COG2909 159 ENLTLVVTSRSR 170 (894)
T ss_pred CCeEEEEEeccC
Confidence 478888877644
No 329
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.29 E-value=0.013 Score=56.61 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 444433 999999999999999999998887754
No 330
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.29 E-value=0.0035 Score=60.73 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+-- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 899999999999999999998877643
No 331
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.28 E-value=0.0042 Score=66.87 Aligned_cols=61 Identities=10% Similarity=0.169 Sum_probs=43.9
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|--+. +.+ ......+++.|++++++.+.+||+++|.... +.+.||
T Consensus 443 ~~~p~lLllDEPt~-------~LD-~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~------------------~~~~~d 496 (520)
T TIGR03269 443 IKEPRIVILDEPTG-------TMD-PITKVDVTHSILKAREEMEQTFIIVSHDMDF------------------VLDVCD 496 (520)
T ss_pred hcCCCEEEEeCCcc-------cCC-HHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH------------------HHHhCC
Confidence 35799999993222 222 3455678888889988889999999994221 446789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|+.
T Consensus 497 ~i~~l~~ 503 (520)
T TIGR03269 497 RAALMRD 503 (520)
T ss_pred EEEEEEC
Confidence 9998863
No 332
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.28 E-value=0.0029 Score=57.65 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=27.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 18 LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred eEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444433 9999999999999999999988877543
No 333
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=0.0018 Score=60.64 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 454443 899999999999999999998776643
No 334
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.28 E-value=0.0058 Score=65.94 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=43.6
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|--+. +. +......+++.|+.++++.+.+||+++|... .+...||
T Consensus 441 ~~~p~llllDEPt~-------~L-D~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~------------------~~~~~~d 494 (529)
T PRK15134 441 ILKPSLIILDEPTS-------SL-DKTVQAQILALLKSLQQKHQLAYLFISHDLH------------------VVRALCH 494 (529)
T ss_pred hCCCCEEEeeCCcc-------cc-CHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH------------------HHHHhcC
Confidence 35799999993322 22 2344567888889998888999999999322 1446789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|+.
T Consensus 495 ~i~~l~~ 501 (529)
T PRK15134 495 QVIVLRQ 501 (529)
T ss_pred eEEEEEC
Confidence 9998874
No 335
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.28 E-value=0.0031 Score=68.94 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCC---ccccccCCC---CC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYGGS---AE 364 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~---~~~i~~~~~---~~ 364 (539)
+++|+.+.|.|++|+|||||+.-++--.--. ...|.+-.-+ .+.+.+..+ ++....-+ ...++++-. ..
T Consensus 366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 443 (582)
T PRK11176 366 IPAGKTVALVGRSGSGKSTIANLLTRFYDID-EGEILLDGHDLRDYTLASLRNQ-VALVSQNVHLFNDTIANNIAYARTE 443 (582)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHhccCCC-CceEEECCEEhhhcCHHHHHhh-ceEEccCceeecchHHHHHhcCCCC
Confidence 8999999999999999999987776543322 3444432222 223333322 22211111 111111100 11
Q ss_pred CCCHHHHHHHHH------Hhhccc---eeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 365 RMTVEEFEQGKA------WLSNTF---SLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 365 ~l~~~~~~~~~~------~l~~~~---~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
..+++++.++.+ ++...+ ....-+.....+-.+ -+..+|.+. .+++++++|.-+.-+ +.
T Consensus 444 ~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall--~~~~ililDEptsaL-------D~- 513 (582)
T PRK11176 444 QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL--RDSPILILDEATSAL-------DT- 513 (582)
T ss_pred CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH--hCCCEEEEECccccC-------CH-
Confidence 356676655432 222211 111001111122222 233334333 378999999444332 11
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+.-..+.+.|+++. .+.++|+++|.-. ....||.|+.|...
T Consensus 514 ~t~~~i~~~l~~~~--~~~tvI~VtHr~~-------------------~~~~~D~Ii~l~~g 554 (582)
T PRK11176 514 ESERAIQAALDELQ--KNRTSLVIAHRLS-------------------TIEKADEILVVEDG 554 (582)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEecchH-------------------HHHhCCEEEEEECC
Confidence 22235667776653 3699999999321 23468999999753
No 336
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0048 Score=60.50 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444444 999999999999999999998877643
No 337
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00077 Score=67.28 Aligned_cols=36 Identities=17% Similarity=0.381 Sum_probs=30.2
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
++..+|++-- +.+||++.|-|||||||||++.-||-
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3566776655 99999999999999999999887763
No 338
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.27 E-value=0.0058 Score=56.75 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876653
No 339
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.00053 Score=68.02 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+..||+.+|.||+||||||++.-||
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 9999999999999999999988766
No 340
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.26 E-value=0.0027 Score=61.17 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 999999999999999999998876633
No 341
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.26 E-value=0.0028 Score=64.77 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.9
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
.+++++++|.-.. +.+ .....++.+.|.++.++.+.+||+++|
T Consensus 181 ~~P~ILLlDEPts-------~LD-~~~r~~l~~~L~~l~~~~~~TII~iTH 223 (382)
T TIGR03415 181 MDADILLMDEPFS-------ALD-PLIRTQLQDELLELQAKLNKTIIFVSH 223 (382)
T ss_pred cCCCEEEEECCCc-------cCC-HHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999993332 222 234457888888888888999999999
No 342
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.26 E-value=0.008 Score=55.88 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 999999999999999999998866543
No 343
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0032 Score=61.79 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=28.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+-- +.+|+.+.|.|++|+|||||+.-++-..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 57 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF 57 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4555544 9999999999999999999988776443
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=97.25 E-value=0.0019 Score=76.99 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=28.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-|+.+.+ +.+|+++.|.|++|+|||||+.-++-.
T Consensus 895 iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~ 929 (1470)
T PLN03140 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 929 (1470)
T ss_pred EeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCC
Confidence 4566666 999999999999999999998877654
No 345
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.25 E-value=0.0018 Score=69.56 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 27 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl 60 (510)
T PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI 60 (510)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 999999999999999999998776643
No 346
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=0.0061 Score=57.21 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=25.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+| ++.|.|++|+|||||+.-++-.
T Consensus 16 l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC
Confidence 444433 8899 9999999999999998877643
No 347
>PRK13768 GTPase; Provisional
Probab=97.25 E-value=0.0028 Score=61.21 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
-+++++|++|+||||++.+++..++.+ |.+|+++.++...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~-g~~v~~i~~D~~~ 42 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ-GYDVAIVNLDPAV 42 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc-CCceEEEECCCcc
Confidence 368899999999999999999998875 9999999988553
No 348
>PRK06921 hypothetical protein; Provisional
Probab=97.24 E-value=0.0069 Score=58.91 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+.-++|.|+||+|||.|+..++..+..+.|..|+|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 56788999999999999999998887644899999995
No 349
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.24 E-value=0.0028 Score=62.06 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555544 999999999999999999998766644
No 350
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.24 E-value=0.0055 Score=57.03 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444443 899999999999999999998766643
No 351
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.24 E-value=0.0015 Score=62.47 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=27.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 444433 8999999999999999999988777443
No 352
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.24 E-value=0.006 Score=58.81 Aligned_cols=33 Identities=36% Similarity=0.435 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444444 899999999999999999998877654
No 353
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.017 Score=56.34 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=27.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 444444 999999999999999999999887654
No 354
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.24 E-value=0.016 Score=56.31 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 60 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNR 60 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 99999999999999999999887764
No 355
>PRK07773 replicative DNA helicase; Validated
Probab=97.24 E-value=0.00041 Score=78.99 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=49.1
Q ss_pred ccccccchhccceEEEEEeCCCC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 476 ISGSAHFINKCDNGIVIHRNRDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 476 l~gs~~i~~~aD~vl~l~r~~~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|--...|+|.||.|++|||++.. +....+..+++|.|||||++|++ .+.|++++.||.+.
T Consensus 822 ~~~hn~i~~dAD~v~~l~r~~~y~~~~~~~g~~e~ii~K~R~g~~g~~---~~~~~~~~~~f~~~ 883 (886)
T PRK07773 822 IIVHNSIEQDADVVILLYRPDYYDRDDPRGGEAEFIVAKHRNGPTGTV---TLAFQLHLSRFANL 883 (886)
T ss_pred eEecCceeccCCEEEEEechhhcCCCCCCCCceEEEEeccCCCCCceE---EEEEecCcceeecc
Confidence 33456799999999999997732 22334789999999999999986 79999999999875
No 356
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.013 Score=56.63 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3555544 999999999999999999998876644
No 357
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.011 Score=57.17 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444443 99999999999999999999888764
No 358
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.23 E-value=0.0033 Score=68.90 Aligned_cols=166 Identities=14% Similarity=0.116 Sum_probs=87.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCCc---cccccCCC--CCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKPF---FEANYGGS--AER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~~---~~i~~~~~--~~~ 365 (539)
+++|+.+.|.|++|+||||++.-++... -. ...+.+-.- +.+.+.+.+. ++....-+. ..++++-. .+.
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~~~~lr~~-i~~v~Q~~~LF~~TI~eNI~~g~~~ 449 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELDPESWRKH-LSWVGQNPQLPHGTLRDNVLLGNPD 449 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCCHHHHHhh-eEEecCCCcCCCcCHHHHhhcCCCC
Confidence 8999999999999999999988777655 32 334443321 3445544433 222211110 11111110 124
Q ss_pred CCHHHHHHHHH------Hhhccc---e-eEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 366 MTVEEFEQGKA------WLSNTF---S-LIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 366 l~~~~~~~~~~------~l~~~~---~-~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
.+++++.++.+ ++...+ . .+. +.....+= .+-+..+|.+. .+++++++|.-+.-++ .
T Consensus 450 ~~~eei~~al~~a~l~~~i~~lp~G~dT~vg-e~G~~LSGGQrQRialARAll--~~~~IliLDE~TSaLD--------~ 518 (588)
T PRK11174 450 ASDEQLQQALENAWVSEFLPLLPQGLDTPIG-DQAAGLSVGQAQRLALARALL--QPCQLLLLDEPTASLD--------A 518 (588)
T ss_pred CCHHHHHHHHHHhCHHHHHHhcccccccccc-cCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCCC--------H
Confidence 67777766532 232221 1 110 10111221 22333344333 4789999995443321 1
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+.-..+.+.|+++. .+.++|+++|.-. .-..||.++.|..
T Consensus 519 ~te~~i~~~l~~~~--~~~TvIiItHrl~-------------------~i~~aD~Iivl~~ 558 (588)
T PRK11174 519 HSEQLVMQALNAAS--RRQTTLMVTHQLE-------------------DLAQWDQIWVMQD 558 (588)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEecChH-------------------HHHhCCEEEEEeC
Confidence 22235666666654 4688999999321 1246899999864
No 359
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.23 E-value=0.022 Score=55.26 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 28 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444433 899999999999999999999877744
No 360
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.23 E-value=0.0023 Score=59.88 Aligned_cols=34 Identities=32% Similarity=0.294 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3444433 999999999999999999998877644
No 361
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.014 Score=56.26 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 344433 99999999999999999999888863
No 362
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.0068 Score=58.53 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444444 899999999999999999998877754
No 363
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.22 E-value=0.0031 Score=67.58 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 53 (501)
T PRK10762 19 ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53 (501)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998776644
No 364
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.22 E-value=0.009 Score=57.69 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999999887764
No 365
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.0032 Score=59.09 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=27.2
Q ss_pred chhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 285 WRALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 285 ~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
...|+++-- +.+||++.|.|+|||||||++.-+|
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 444555543 9999999999999999999977655
No 366
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.20 E-value=0.0066 Score=57.54 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444444 999999999999999999998876644
No 367
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.017 Score=55.85 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred ecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 999999999999999999998877643
No 368
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.018 Score=55.96 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3455544 999999999999999999998887754
No 369
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0018 Score=54.33 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=53.7
Q ss_pred CCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHHHH
Q 009230 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202 (539)
Q Consensus 123 ~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~~~ 202 (539)
.+.|+||||--|..++-+++...++.+.+++.+.. ..+. .+....+.+.|+|.+|.|.+|.+-.+
T Consensus 9 ~~~vIVVEGK~D~~~l~~~~~~~~i~~~g~~i~~~--------------~~ie-~i~~~~~~k~VIILTD~D~~Ge~Irk 73 (127)
T COG1658 9 LKEVIVVEGKDDTASLKRLGDAGVIITNGSAINSL--------------ETIE-LIKKAQKYKGVIILTDPDRKGERIRK 73 (127)
T ss_pred cCceEEEeCCcHHHHHHHhcCCceEEEcCCccchH--------------HHHH-HHHHhhccCCEEEEeCCCcchHHHHH
Confidence 36899999999999999999887776543332211 0100 11222347889999999999999999
Q ss_pred HHHHHhcC
Q 009230 203 ELARRVGR 210 (539)
Q Consensus 203 ~~~~~l~~ 210 (539)
.+.+.|+.
T Consensus 74 ~l~~~l~~ 81 (127)
T COG1658 74 KLKEYLPG 81 (127)
T ss_pred HHHHHhcc
Confidence 99999976
No 370
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.17 E-value=0.0069 Score=59.43 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 37 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 999999999999999999998888754
No 371
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.16 E-value=0.013 Score=57.29 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444443 999999999999999999998877643
No 372
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.16 E-value=0.0068 Score=54.32 Aligned_cols=146 Identities=14% Similarity=0.093 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC-----CCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM-----ENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~-----E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
+| ++.|.+++|.||||.++-++..++.+ |.+|+++-+ .......+.++ ++.+.....+
T Consensus 5 ~G-li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g---------- 67 (173)
T TIGR00708 5 RG-IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTG---------- 67 (173)
T ss_pred cc-EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhc-----CcEEEECCCC----------
Confidence 35 77777789999999999999999884 999987732 22223333332 3333322111
Q ss_pred HHHHHHHhhccceeEeecCCCCC---CHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHH
Q 009230 371 FEQGKAWLSNTFSLIRCENDSLP---SIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFA 447 (539)
Q Consensus 371 ~~~~~~~l~~~~~~i~~~~~~~~---~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA 447 (539)
+.+.. . +... ...+..+.++..+....+++||+|-++..+.-. --+ .+++++.|+ .
T Consensus 68 -----------~~~~~-~-~~~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~g--li~----~~~v~~lL~--~ 126 (173)
T TIGR00708 68 -----------FTWET-Q-NREADTAIAKAAWQHAKEMLADPELDLVLLDELTYALKYG--YLD----VEEVVEALQ--E 126 (173)
T ss_pred -----------CeecC-C-CcHHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCC--CcC----HHHHHHHHH--h
Confidence 11110 0 0000 012233444455555679999999887665431 112 234555554 2
Q ss_pred HHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 448 QHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 448 ~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+.-++.||++-++. ...+-..||.|--+...+
T Consensus 127 rp~~~evVlTGR~~-----------------p~~l~e~AD~VTEm~~vK 158 (173)
T TIGR00708 127 RPGHQHVIITGRGC-----------------PQDLLELADLVTEMRPVK 158 (173)
T ss_pred CCCCCEEEEECCCC-----------------CHHHHHhCceeeeecccc
Confidence 45678888875521 124667889887776544
No 373
>PTZ00293 thymidine kinase; Provisional
Probab=97.16 E-value=0.0029 Score=58.58 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 374 (539)
..|.|.+++||-++|||+-+++.+.+.... |.+++.|-.-.+.+.-....+..+.|...
T Consensus 2 ~~G~i~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~~DtR~~~~~~I~Sh~g~~~-------------------- 60 (211)
T PTZ00293 2 YRGTISVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYSKDTRYSDEQNISSHDKQML-------------------- 60 (211)
T ss_pred CceEEEEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEecccccCCCCCcEEecCCCcc--------------------
Confidence 458999999999999999777777777664 88999887654433100000000001000
Q ss_pred HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 009230 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454 (539)
Q Consensus 375 ~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~v 454 (539)
.-+.+ ..+.++.+.+ .++++|+||-. +.+..+.+....++ ..|++|
T Consensus 61 ------~a~~v-------~~~~e~~~~~------~~~dvI~IDEa--------------QFf~~i~~~~~~l~-~~g~~V 106 (211)
T PTZ00293 61 ------KAIKV-------SKLKEVLETA------KNYDVIAIDEG--------------QFFPDLVEFSEAAA-NLGKIV 106 (211)
T ss_pred ------eeEEc-------CCHHHHHHhc------cCCCEEEEEch--------------HhhHhHHHHHHHHH-HCCCeE
Confidence 00111 1233333322 36899999922 22333333333333 789999
Q ss_pred EEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 455 i~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
++..-...-.+ .-+.++..+-..||.|.-|...-
T Consensus 107 ivaGLd~Df~~--------~~F~~~~~Ll~~AD~V~kl~aiC 140 (211)
T PTZ00293 107 IVAALDGTFQR--------KPFGQILNLIPLAERVTKLTAVC 140 (211)
T ss_pred EEEecCccccc--------CcCccHHHHHHhhCEEEEcceEc
Confidence 88766322221 12567788889999998776543
No 374
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.0098 Score=57.48 Aligned_cols=160 Identities=17% Similarity=0.158 Sum_probs=88.2
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEe---CCCCHHHHHHHHHHHhhCCCccccc
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCS---MENKVREHARKLLEKHIKKPFFEAN 358 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s---~E~~~~~~~~r~~~~~~~~~~~~i~ 358 (539)
.+..||++.- +.+|+++.|.|+||+||||++.- .|.... ....|.+.. ...+...+. ...+..|+=+..+.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~--iN~Le~PtsG~v~v~G~di~~l~~~~Lr--~~R~~IGMIFQhFn 93 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRL--INLLERPTSGSVFVDGQDLTALSEAELR--QLRQKIGMIFQHFN 93 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHH--HhccCCCCCceEEEcCEecccCChHHHH--HHHhhccEEecccc
Confidence 4567777765 99999999999999999999773 344332 235666665 334444332 22222222111110
Q ss_pred ------------cCCCCCCCCHHHHHH-HHHHhh-----ccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Q 009230 359 ------------YGGSAERMTVEEFEQ-GKAWLS-----NTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYN 420 (539)
Q Consensus 359 ------------~~~~~~~l~~~~~~~-~~~~l~-----~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~ 420 (539)
+.-....++.++.++ ..+.+. ++..-+ ...=+....+-...++.++ .+|++++-|--+
T Consensus 94 LLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~y--P~qLSGGQKQRVaIARALa--~~P~iLL~DEaT 169 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRY--PAQLSGGQKQRVAIARALA--NNPKILLCDEAT 169 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccC--chhcCcchhhHHHHHHHHh--cCCCEEEecCcc
Confidence 000001233444332 222221 111000 0011112334445555444 579999999555
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 421 ELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 421 ~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
+.+. .+-...+++-|+.+-+++|++|++++|
T Consensus 170 SALD--------P~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 170 SALD--------PETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred ccCC--------hHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 4432 233567999999999999999999999
No 375
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.018 Score=58.92 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHh---cCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEH---AGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~---~g~~vl~~s~E~ 336 (539)
+.++++.|++|+||||.+..+|..+... .|.+|++++.+-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 3589999999999999999999887642 378999999985
No 376
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.15 E-value=0.0012 Score=58.10 Aligned_cols=37 Identities=35% Similarity=0.583 Sum_probs=33.0
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+.|++|+|||||+.+++..+... |.+++.+..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~-g~~v~ii~~D~~ 38 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRAR-GKRVAVLAIDPS 38 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeCCC
Confidence 5788999999999999999888775 999999998864
No 377
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.15 E-value=0.0039 Score=71.00 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=39.3
Q ss_pred hhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC------HHHHHHHHH
Q 009230 286 RALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK------VREHARKLL 346 (539)
Q Consensus 286 ~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~------~~~~~~r~~ 346 (539)
.-|+.+.| ++||.||.|.|.+|+|||||+.=+|- .....|++.|+. .++.+.|..
T Consensus 805 qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~------R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAG------RKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred EhhhcCceEecCCceeehhcCCCCchHHHHHHHhc------CcccceEEeEEEECCeeCchhhhcccc
Confidence 34677778 99999999999999999999655442 345567777743 224555554
No 378
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.15 E-value=0.01 Score=55.38 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998876643
No 379
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.15 E-value=0.0079 Score=56.76 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=30.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSME 335 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E 335 (539)
.+.|.|++|+|||.|+..++..+... .+.+|+|++.+
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 56799999999999999998887764 36899999865
No 380
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.14 E-value=0.028 Score=56.91 Aligned_cols=141 Identities=16% Similarity=0.185 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HH-HHHHHHHHHhhCCCccccccCCCCCCCCHHHH-HHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VR-EHARKLLEKHIKKPFFEANYGGSAERMTVEEF-EQG 374 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~-~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~-~~~ 374 (539)
.+++++|--|+||||.+-.+|..+.. .|++|+.++++.- |. .-..+.++...++++..... .-++-++ .++
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~-----~~~Pv~Iak~a 174 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGT-----EKDPVEIAKAA 174 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCC-----CCCHHHHHHHH
Confidence 68999999999999999999999988 5999999999954 22 11234567778888765421 2233333 344
Q ss_pred HHHhhcc-ceeEeecCCCCCCHH-HHHHHHHHHHHHcCCc--EEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 009230 375 KAWLSNT-FSLIRCENDSLPSIK-WVLDLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 450 (539)
Q Consensus 375 ~~~l~~~-~~~i~~~~~~~~~~~-~i~~~i~~~~~~~~~~--~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~ 450 (539)
.++.... .-++-++.-+...+| ++.+.+..+...-.|+ ++|||..+ + ......-+.|-+..
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~--------G-------QdA~~~A~aF~e~l 239 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI--------G-------QDAVNTAKAFNEAL 239 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc--------c-------hHHHHHHHHHhhhc
Confidence 4554443 222223545666665 4777777776666664 78888222 1 12334446677788
Q ss_pred CcEEEEEec
Q 009230 451 ACHVWFVAH 459 (539)
Q Consensus 451 ~i~vi~~~q 459 (539)
+++-++++-
T Consensus 240 ~itGvIlTK 248 (451)
T COG0541 240 GITGVILTK 248 (451)
T ss_pred CCceEEEEc
Confidence 999999876
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.12 E-value=0.0085 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
..|++++|.|++|+||||++..++
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHhe
Confidence 347899999999999999987664
No 382
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0072 Score=58.37 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 89999999999999999999887763
No 383
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.12 E-value=0.0093 Score=71.34 Aligned_cols=34 Identities=38% Similarity=0.630 Sum_probs=29.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-|+.+.+ +.+|+++.|.|++|+|||||+.-++-.
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~ 110 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASN 110 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4666767 999999999999999999998887754
No 384
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.12 E-value=0.0025 Score=62.45 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444443 899999999999999999998877643
No 385
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.11 E-value=0.0056 Score=65.74 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl 312 (510)
T PRK15439 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGL 312 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 455433 999999999999999999998877643
No 386
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=97.11 E-value=0.0062 Score=72.78 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=29.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
-|+.+.. +.+|+++.|.|++|+|||||+.-++-..
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~ 813 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV 813 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566666 9999999999999999999988776543
No 387
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.023 Score=54.93 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=24.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999999888743
No 388
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.014 Score=56.29 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=27.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444444 999999999999999999998877654
No 389
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.11 E-value=0.0069 Score=58.47 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 444444 999999999999999999998887653
No 390
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.10 E-value=0.0038 Score=58.17 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|++++|+|++|+|||||+..++...
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 6788999999999999999999998554
No 391
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.10 E-value=0.0077 Score=62.40 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCC--CCHHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSME--NKVREHARKLLEK 348 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E--~~~~~~~~r~~~~ 348 (539)
.++|.|+||+|||+++..++.++.... +..++|+++. .+...++.+++..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 568999999999999999998876542 4778888764 2344555555443
No 392
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.10 E-value=0.0032 Score=67.63 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 21 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl 54 (510)
T PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI 54 (510)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 455444 999999999999999999998776643
No 393
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.09 E-value=0.031 Score=54.03 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 899999999999999999998877654
No 394
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.09 E-value=0.023 Score=59.53 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=44.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCCC---HHHHHHHHHHHhhCCCcc
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENK---VREHARKLLEKHIKKPFF 355 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~~---~~~~~~r~~~~~~~~~~~ 355 (539)
+..|.++++.|++|+||||.+..|+......+| .+|.+++.+-. ..+-+ +..+...|++..
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQL-r~~AeilGVpv~ 317 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQL-RIYGKILGVPVH 317 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHH-HHHHHHhCCCee
Confidence 456889999999999999999999988865556 48999988743 21221 334555666654
No 395
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.08 E-value=0.021 Score=50.58 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=79.0
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE---eC--CCCHHHHHHHHHHHhhCCCccccccCCCCC-CCCHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC---SM--ENKVREHARKLLEKHIKKPFFEANYGGSAE-RMTVEEFE 372 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~---s~--E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~-~l~~~~~~ 372 (539)
++.|..++|.|||+.++-++..++.+ |.+|+++ -. +.....++.++ -++.......+.... .-.+++..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHHHH
Confidence 77788888999999999999999985 9999994 33 23333333333 233332211110000 00000000
Q ss_pred HHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCc
Q 009230 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHAC 452 (539)
Q Consensus 373 ~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i 452 (539)
. .....+.++..+....+++||+|-++..+.-. .-+ .+++++.|+. +--++
T Consensus 79 ~---------------------a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~g---li~---~~~v~~ll~~--rp~~~ 129 (159)
T cd00561 79 A---------------------AAEGWAFAKEAIASGEYDLVILDEINYALGYG---LLD---VEEVVDLLKA--KPEDL 129 (159)
T ss_pred H---------------------HHHHHHHHHHHHhcCCCCEEEEechHhHhhCC---CCC---HHHHHHHHHc--CCCCC
Confidence 0 11223344444555679999999887765432 112 2345554442 34578
Q ss_pred EEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEE
Q 009230 453 HVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIH 493 (539)
Q Consensus 453 ~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~ 493 (539)
.||++.++-. ..+...||.|--+.
T Consensus 130 evIlTGr~~p-----------------~~l~e~AD~VTEm~ 153 (159)
T cd00561 130 ELVLTGRNAP-----------------KELIEAADLVTEMR 153 (159)
T ss_pred EEEEECCCCC-----------------HHHHHhCceeeecc
Confidence 8888766311 23566778766554
No 396
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.0072 Score=58.92 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=26.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|..+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 32 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 64 (265)
T PRK14252 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNR 64 (265)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444433 89999999999999999999887764
No 397
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.08 E-value=0.027 Score=55.12 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 48 i~~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 48 IPKNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 899999999999999999998887643
No 398
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.0045 Score=66.36 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+++|+.+.|.|++|+|||||+.-++-.
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 899999999999999999998877744
No 399
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.07 E-value=0.029 Score=54.42 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 333433 999999999999999999998887754
No 400
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.07 E-value=0.0047 Score=66.15 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=40.5
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|--+. +.+ ......+.+.|+.++++ +.+||+++|.-. .+.+.||.
T Consensus 412 ~~p~lllLDEPt~-------~LD-~~~~~~l~~~l~~~~~~-g~tviivtHd~~------------------~~~~~~d~ 464 (501)
T PRK10762 412 TRPKVLILDEPTR-------GVD-VGAKKEIYQLINQFKAE-GLSIILVSSEMP------------------EVLGMSDR 464 (501)
T ss_pred hCCCEEEEcCCCC-------CCC-HhHHHHHHHHHHHHHHC-CCEEEEEcCCHH------------------HHHhhCCE
Confidence 5789999993332 222 23455677778888765 899999999422 24567899
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
++.|..
T Consensus 465 v~~l~~ 470 (501)
T PRK10762 465 ILVMHE 470 (501)
T ss_pred EEEEEC
Confidence 998874
No 401
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.06 E-value=0.0033 Score=63.71 Aligned_cols=45 Identities=31% Similarity=0.423 Sum_probs=32.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~ 340 (539)
..++.+++|+|++|+||||++..++..+....+.+ +++.|.+.+.
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~--i~tiEdp~E~ 163 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGH--IITIEDPIEY 163 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCE--EEEEcCChhh
Confidence 34567999999999999999988876654322334 4466887663
No 402
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.013 Score=58.96 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=27.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|..+.- +.+|+++.|.|++|+|||||+.-++..
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~ 131 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL 131 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444444 999999999999999999999887754
No 403
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.026 Score=54.51 Aligned_cols=32 Identities=25% Similarity=0.329 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 21 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 89999999999999999999888764
No 404
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.0035 Score=67.34 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 312 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV 312 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 444433 999999999999999999998877743
No 405
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.06 E-value=0.027 Score=54.39 Aligned_cols=33 Identities=27% Similarity=0.300 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 443433 999999999999999999998887754
No 406
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.05 E-value=0.0052 Score=61.47 Aligned_cols=39 Identities=13% Similarity=0.213 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+.-.+|.|+||+|||.|+..+|..+..+ |..|+|++..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-g~~V~y~t~~ 220 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-GKSVIYRTAD 220 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEEHH
Confidence 34678899999999999999999988875 9999999853
No 407
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.0062 Score=67.10 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+.+.|.|++|+|||||+.-++-.
T Consensus 335 i~~Ge~~~l~G~NGsGKSTLlk~l~G~ 361 (638)
T PRK10636 335 LVPGSRIGLLGRNGAGKSTLIKLLAGE 361 (638)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998887754
No 408
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.05 E-value=0.023 Score=54.85 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 l~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14249 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRM 53 (251)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 444433 899999999999999999998877653
No 409
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.05 E-value=0.0033 Score=68.84 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+.+.|.|++|+|||||+.-++-
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999999866553
No 410
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=97.04 E-value=0.0025 Score=51.98 Aligned_cols=81 Identities=30% Similarity=0.371 Sum_probs=51.8
Q ss_pred cEEEEechhhHHHHHHhCC---CceEEcCCCCCCCCCCCCCCChhh-hhhhHHHHhHHHHhccCCEEEEEecCCccchHH
Q 009230 125 DIIIVEGEMDKLSMEEAGF---LNCVSVPDGAPSSVSKKNVPSEEQ-DTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 200 (539)
Q Consensus 125 ~v~i~EG~~Dalsl~~~g~---~~~v~l~~g~~~~~~~~~l~~~~~-~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~ 200 (539)
+|+|+||..|+-++.++.. ..++++ .|...... .|.... ..+...+......+.+..+||+|.|+|..|+..
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~-~Ghl~~~~---~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIAT-SGHLLELA---KPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEE-SSSSEEST---TSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEe-CCcccccc---cccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 4899999999999999976 333332 34332111 111100 111222333445566789999999999999999
Q ss_pred HHHHHHHhc
Q 009230 201 AEELARRVG 209 (539)
Q Consensus 201 ~~~~~~~l~ 209 (539)
+..+.+.++
T Consensus 77 a~~i~~~~~ 85 (100)
T PF01751_consen 77 AWEIIELLG 85 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988884
No 411
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=97.04 E-value=0.0026 Score=63.10 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=64.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccc--cCCCCCCCCHHH-HHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEAN--YGGSAERMTVEE-FEQG 374 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~--~~~~~~~l~~~~-~~~~ 374 (539)
.+++++|.-|+||||++..+|.++|.. |.+|+.+|++-... +.. ++....+-....+. .+-....++.+. +++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~~-L~d-~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~ 78 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAHS-LSD-VLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEY 78 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTTH-HHH-HHTS--BSS-EEETTCSSEEEEE--HHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCcc-HHH-HhCCcCCCCCeEecCCCCceeeecCHHHHHHHH
Confidence 378999999999999999999999996 99999999996543 222 22222222222332 110111233332 2222
Q ss_pred HHHh----hccce------eEeecCCCCCCHHHHH--HHHHHHHHHcCCcEEEEcc
Q 009230 375 KAWL----SNTFS------LIRCENDSLPSIKWVL--DLAKAAVLRHGVRGLVIDP 418 (539)
Q Consensus 375 ~~~l----~~~~~------~i~~~~~~~~~~~~i~--~~i~~~~~~~~~~~vvID~ 418 (539)
.+.+ ..... ++...-...|.++++. ..+..+......++||+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt 134 (305)
T PF02374_consen 79 WEEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLESGEYDLIVVDT 134 (305)
T ss_dssp HHHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEES
T ss_pred HHHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 1111 11000 0001112346777754 4555666677899999993
No 412
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0053 Score=65.77 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 53 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN 53 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998877643
No 413
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.0075 Score=58.49 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=27.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444 8999999999999999999988777543
No 414
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.03 E-value=0.032 Score=54.38 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 26 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444433 99999999999999999999987774
No 415
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.02 E-value=0.0045 Score=59.73 Aligned_cols=36 Identities=28% Similarity=0.524 Sum_probs=31.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
|++|+|.||+||||++.+++..+... +.+|.+++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-~~~v~~i~~D 36 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-NIDVIILGTD 36 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-CCceEEEccH
Confidence 58999999999999999999887664 7888888764
No 416
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.02 E-value=0.0055 Score=59.24 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred eecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence 444433 99999999999999999999987664
No 417
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0026 Score=60.19 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
-++|.|++|+|||+|++.+..+... ....+|+..+
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~--~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH--KFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc--cCCEEEEEec
Confidence 4679999999999999999987654 3444444444
No 418
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0076 Score=64.60 Aligned_cols=173 Identities=23% Similarity=0.314 Sum_probs=88.7
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC----C-------c
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK----P-------F 354 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~----~-------~ 354 (539)
-|+++.- ++||+.+.+.||+|+||||++.=+. ++-.-....++.=. .+-.++=.+.+....|. | .
T Consensus 483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~PtsG~IllDG--~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDPTSGRILLDG--VPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCCCCeEEECC--eehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 4555554 9999999999999999999865443 33332344444321 22222222222222111 1 1
Q ss_pred cccccCCCCCCCCHHHHHHHH------HHhhccceeEe--ecCCC---CCCHHHHHHHHHHHHHHcCCcEEEEccccccc
Q 009230 355 FEANYGGSAERMTVEEFEQGK------AWLSNTFSLIR--CENDS---LPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~------~~l~~~~~~i~--~~~~~---~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
+.|.+|- ...++|++..+. +.+.+.+.=+. +.+.+ +....+=++.+|.++ .+|.++|+|.-+..+
T Consensus 560 eNI~YG~--~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl--r~P~VLILDEATSAL 635 (716)
T KOG0058|consen 560 ENIAYGL--DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL--RNPRVLILDEATSAL 635 (716)
T ss_pred HHHhcCC--CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh--cCCCEEEEechhhhc
Confidence 2233442 246677776543 33433221110 11111 112233444455544 478999999666554
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+ .++|. .+.+ .|.++.++ -+|++++| -.. -+.||.|.++.+-+
T Consensus 636 D----aeSE~-lVq~---aL~~~~~~--rTVlvIAHRLST--------------------V~~Ad~Ivvi~~G~ 679 (716)
T KOG0058|consen 636 D----AESEY-LVQE---ALDRLMQG--RTVLVIAHRLST--------------------VRHADQIVVIDKGR 679 (716)
T ss_pred c----hhhHH-HHHH---HHHHhhcC--CeEEEEehhhhH--------------------hhhccEEEEEcCCe
Confidence 3 23332 2233 33333333 88999999 321 24678888887654
No 419
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.023 Score=55.67 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++
T Consensus 36 l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444433 9999999999999999999988776
No 420
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.018 Score=56.30 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=27.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 40 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444433 9999999999999999999998887543
No 421
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.00 E-value=0.004 Score=58.88 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=27.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3454444 999999999999999999998877654
No 422
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.00 E-value=0.0041 Score=66.50 Aligned_cols=33 Identities=12% Similarity=0.320 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 264 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 297 (491)
T PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI 297 (491)
T ss_pred cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC
Confidence 444433 999999999999999999998877643
No 423
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.00 E-value=0.0012 Score=59.90 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=35.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
++|++++|.|.||+||||++..++..+... |..+.++..+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~-g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREA-GYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEcCc
Confidence 578999999999999999999999888664 7888888765
No 424
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=96.99 E-value=0.008 Score=64.23 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 14 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 47 (491)
T PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI 47 (491)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 444443 999999999999999999998877643
No 425
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.99 E-value=0.0028 Score=58.99 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
...|++++|.|++|+|||+++..++.....
T Consensus 26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l 55 (204)
T cd03282 26 RGSSRFHIITGPNMSGKSTYLKQIALLAIM 55 (204)
T ss_pred eCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999988765544
No 426
>PF09807 DUF2348: Uncharacterized conserved protein (DUF2348); InterPro: IPR018627 Members of this family of putative uncharacterised proteins have no known function.
Probab=96.98 E-value=0.017 Score=55.51 Aligned_cols=191 Identities=16% Similarity=0.234 Sum_probs=117.5
Q ss_pred chhhhhhhc-----cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccccc
Q 009230 285 WRALNELYN-----VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANY 359 (539)
Q Consensus 285 ~~~LD~~~~-----l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~ 359 (539)
|++|+.+++ .++|.+++|... ++-=|.++.+++....+ .|.+|+++++..+.... .+. ++-.|+++...+.
T Consensus 2 f~eln~ll~~~~~~~~~g~~ili~d~-~~dgsFLlh~~L~~~Lk-~~~~V~fv~~~q~~~HY-~~v-~~KLG~NL~~~~~ 77 (249)
T PF09807_consen 2 FPELNSLLNWSPDSVPPGKLILIEDC-ETDGSFLLHHFLSQYLK-AGCKVCFVAFSQSFSHY-NNV-AQKLGVNLSAAKE 77 (249)
T ss_pred chHHHHHhcCCCCCCCCCeEEEEEcC-CCCchhHHHHHHHHHhc-CCCcEEEEEccCCHHHH-HHH-HHhhEecchHhcc
Confidence 466776663 789999999999 88888888888888877 49999999999886632 222 3335776654432
Q ss_pred CCCCCCCCH-HHHHHHHHHhh-----c--cc-eeEeecCCCCCCHHHHHHHHHHHHHH---cCCcEEEEccccccccCCC
Q 009230 360 GGSAERMTV-EEFEQGKAWLS-----N--TF-SLIRCENDSLPSIKWVLDLAKAAVLR---HGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 360 ~~~~~~l~~-~~~~~~~~~l~-----~--~~-~~i~~~~~~~~~~~~i~~~i~~~~~~---~~~~~vvID~~~~l~~~~~ 427 (539)
.+ ++.- +-+....+.+- + .+ -+++ . .+...+..+.+.|+..... .+..+||||++.-|...
T Consensus 78 ~g---ql~fiD~l~~~~~~l~~~~~~~~~~~~~~l~-~-~~~~~L~~L~~~I~~~l~~~~~~~~~~liIDdls~Ll~l-- 150 (249)
T PF09807_consen 78 KG---QLVFIDGLKSSLDLLFDEDSSDEPNPLKFLR-E-DNASSLRSLYEFIQEALSPADSNGSVVLIIDDLSVLLSL-- 150 (249)
T ss_pred CC---cEEEeehhhhhhhhhhccccccCCccccccc-c-CCcchHHHHHHHHHHHHhhccCCCCeEEEEeCHHHHHHc--
Confidence 21 2110 11111111111 1 11 1111 1 2223467777777665554 34689999998888752
Q ss_pred CCCCHHHHHHHHHHHHH-HHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 428 VSQTETEYVSQMLTMVK-RFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk-~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+.+. ..+-.++..++ .++.+.+..++++.| .-.... .... . =...+.+.||.+|.+..-
T Consensus 151 -G~s~-~~vldF~~ycra~l~~~~~~~lVvl~h~d~~~~~---e~~~--~--l~~~L~h~a~l~i~v~~L 211 (249)
T PF09807_consen 151 -GVSS-NDVLDFIHYCRATLCSESNGSLVVLVHCDIDDED---EEND--L--LLNSLAHMADLVITVEPL 211 (249)
T ss_pred -CCCH-HHHHHHHHHHHHHhccccCCCEEEEEecCCCCcc---chHH--H--HHHHHHHHhcEEEEecCC
Confidence 2233 34667899998 688888888888888 322211 1111 0 124688999999988753
No 427
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.98 E-value=0.014 Score=52.54 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=27.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 999999999999999999998877654
No 428
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.98 E-value=0.0063 Score=67.01 Aligned_cols=171 Identities=18% Similarity=0.189 Sum_probs=89.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHhhCCCc---cccccCC--CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPF---FEANYGG--SAER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~~~~~~~~~~---~~i~~~~--~~~~ 365 (539)
+++|+.+.|.|++||||||++.-+.--.-- ....+.+=..+.+ ...+. |-+.....-++ ..++.+- ..+.
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-~~G~I~~dg~dl~~i~~~~lR-~~ig~V~Q~~~Lf~gSI~eNi~l~~p~ 573 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-QQGRILLDGVDLNDIDLASLR-RQVGYVLQDPFLFSGSIRENIALGNPE 573 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCEeHHhcCHHHHH-hheeEEcccchhhcCcHHHHHhcCCCC
Confidence 999999999999999999997655432222 1334444433322 23222 22211111110 1111110 1233
Q ss_pred CCHHHHHHH------HHHhhccceeEee-cCCCCCC----HHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 366 MTVEEFEQG------KAWLSNTFSLIRC-ENDSLPS----IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 366 l~~~~~~~~------~~~l~~~~~~i~~-~~~~~~~----~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
.+.|++.++ .+.+...|.=+.. -.++..+ ..+.+..+|.+. .+|+++++|--+.-++ .+
T Consensus 574 ~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl--~~P~ILlLDEaTSaLD--------~~ 643 (709)
T COG2274 574 ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL--SKPKILLLDEATSALD--------PE 643 (709)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc--cCCCEEEEeCcccccC--------Hh
Confidence 455555443 2444443321100 0122222 344555555443 5799999994443221 12
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
.-..+++.|.++. .++++|+++|.... -..||.++.++..+-
T Consensus 644 sE~~I~~~L~~~~--~~~T~I~IaHRl~t-------------------i~~adrIiVl~~Gki 685 (709)
T COG2274 644 TEAIILQNLLQIL--QGRTVIIIAHRLST-------------------IRSADRIIVLDQGKI 685 (709)
T ss_pred HHHHHHHHHHHHh--cCCeEEEEEccchH-------------------hhhccEEEEccCCce
Confidence 2245777777665 45899999993322 347899999987653
No 429
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.98 E-value=0.012 Score=53.81 Aligned_cols=151 Identities=19% Similarity=0.327 Sum_probs=84.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH--HHHHhhCCCccccccCCCCC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK--LLEKHIKKPFFEANYGGSAE 364 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r--~~~~~~~~~~~~i~~~~~~~ 364 (539)
|+.+.- +..|++++|.|..|+|||||+.-++-.+... +..|..-.-..+.....+| +++....-+... ..+
T Consensus 22 l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t-~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~g-----t~~ 95 (263)
T COG1101 22 LNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRANLLARVFQDPLAG-----TAP 95 (263)
T ss_pred HhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC-CceEEECceecccCCHHHHhhHHHHHhcchhhC-----Ccc
Confidence 444433 8999999999999999999999888777664 5555544444332222222 233333222211 112
Q ss_pred CCCHHH-HH--------------------H-HHHHh-----------hccceeEeecCCCCCCHHHHHHHHHHHHHHcCC
Q 009230 365 RMTVEE-FE--------------------Q-GKAWL-----------SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV 411 (539)
Q Consensus 365 ~l~~~~-~~--------------------~-~~~~l-----------~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~ 411 (539)
.|+-+| +. + ..+.+ .++.-++ .+ ...+.++.+ ++.-+++
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglL----SG--GQRQalsL~--MAtl~~p 167 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLL----SG--GQRQALSLL--MATLHPP 167 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhc----cc--hHHHHHHHH--HHhcCCC
Confidence 333332 10 0 01111 1111111 11 112222222 3445789
Q ss_pred cEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 412 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 412 ~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
+++++|.++.-..+. .-..+++.-.++..+.+++.+++.||
T Consensus 168 kiLLLDEHTAALDPk--------ta~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 168 KILLLDEHTAALDPK--------TAEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred cEEEecchhhcCCcc--------hHHHHHHHHHHHHHhcCCceEEEecc
Confidence 999999887765432 12456777777889999999999995
No 430
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.98 E-value=0.023 Score=54.90 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 22 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred eeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence 444433 99999999999999999999888763
No 431
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.98 E-value=0.0022 Score=67.51 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=24.9
Q ss_pred hhccCCCcEEEEEcCCCCChhHHHHHHHHHHHH
Q 009230 291 LYNVLPGELTIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 291 ~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
..++.+..-++|.||||+|||+++..++..+..
T Consensus 210 ~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 210 EYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred hccCCCCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 334433345889999999999999988877654
No 432
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.97 E-value=0.0088 Score=64.09 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~ 50 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV 50 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998877643
No 433
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.97 E-value=0.0014 Score=60.72 Aligned_cols=35 Identities=37% Similarity=0.612 Sum_probs=26.3
Q ss_pred Cchhh-hhhh-ccCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 284 GWRAL-NELY-NVLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 284 g~~~L-D~~~-~l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+|..+ +.+. .+.+| +++|.|++|+|||||+..++.
T Consensus 8 ~fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 8 GFKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred CCcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 44445 3332 28889 999999999999999987753
No 434
>PRK09183 transposase/IS protein; Provisional
Probab=96.97 E-value=0.00097 Score=64.61 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..|+.++|.|+||+|||+++..++..++.+ |.+|+|++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~-G~~v~~~~~ 138 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA-GIKVRFTTA 138 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeH
Confidence 7889999999999999999999998777664 999999974
No 435
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.96 E-value=0.006 Score=59.70 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=28.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+.+.|.|++|+|||||+.-++...
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3444444 9999999999999999999988876554
No 436
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.96 E-value=0.0065 Score=67.80 Aligned_cols=165 Identities=18% Similarity=0.122 Sum_probs=83.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCc---cccccCCC-CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEANYGGS-AERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~---~~i~~~~~-~~~l 366 (539)
+++|+.+.|.|++|+|||||+.-++--..-. ...+.+-.-+ .+...+.+++ +....-+. ..++++-. ....
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i-~~v~Q~~~lf~gTI~eNi~~~~~~ 553 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETPE-SGSVFYDGQDLAGLDVQAVRRQL-GVVLQNGRLMSGSIFENIAGGAPL 553 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCEEEECCEEcCcCCHHHHHhcc-EEEccCCccCcccHHHHHhcCCCC
Confidence 8999999999999999999977666443322 3444433222 3444443332 21111110 11111100 0115
Q ss_pred CHHHHHHHHH------Hhhccce----eEeecCCCCCCHH--HHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 367 TVEEFEQGKA------WLSNTFS----LIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 367 ~~~~~~~~~~------~l~~~~~----~i~~~~~~~~~~~--~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
+++++.++.+ .+...+. .+. +.....+-. +-+..+|.+. .+++++++|.-+.-+ +. .
T Consensus 554 ~~e~i~~al~~a~l~~~i~~lp~G~dt~ig-e~G~~LSGGQrQRialARAll--~~p~iLiLDEpTS~L-------D~-~ 622 (686)
T TIGR03797 554 TLDEAWEAARMAGLAEDIRAMPMGMHTVIS-EGGGTLSGGQRQRLLIARALV--RKPRILLFDEATSAL-------DN-R 622 (686)
T ss_pred CHHHHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCC-------CH-H
Confidence 6666655532 2322221 110 101112222 2333444333 578999999444322 21 2
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
.-..+.+.|+++ +.++|+++|.-. .-..||.|+.|..
T Consensus 623 te~~i~~~L~~~----~~T~IiItHr~~-------------------~i~~~D~Iivl~~ 659 (686)
T TIGR03797 623 TQAIVSESLERL----KVTRIVIAHRLS-------------------TIRNADRIYVLDA 659 (686)
T ss_pred HHHHHHHHHHHh----CCeEEEEecChH-------------------HHHcCCEEEEEEC
Confidence 223566666654 679999999311 1246899999964
No 437
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.96 E-value=0.012 Score=56.71 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=79.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCC---CCHHHHHHHHHHHhhCCCccccccCC---CCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSME---NKVREHARKLLEKHIKKPFFEANYGG---SAERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~~~i~~~~---~~~~l 366 (539)
..| -+.+|.||+|+|||.|+.++...-..+ ....|.|++.| .+++++...-... ..-++..-..|+ ..+.+
T Consensus 85 ~qP-~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql-~EgNY~~~~~gTi~P~t~t~ 162 (369)
T PF02456_consen 85 LQP-FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQL-CEGNYDCGPDGTIVPQTGTF 162 (369)
T ss_pred CCc-eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHH-HhcCCCCCCCCeeccccccc
Confidence 444 278899999999999999886543332 36789999999 4466665554332 222222111110 01223
Q ss_pred CHHHHHHHHHHh-hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHH-HHHHH
Q 009230 367 TVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQM-LTMVK 444 (539)
Q Consensus 367 ~~~~~~~~~~~l-~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~-~~~Lk 444 (539)
.++-++-..+.+ .+..+ +-.+++.|...+ .+.|+=.||+|--+.-+.+. .+-....-.+ ++-..
T Consensus 163 ~P~Fv~msy~e~t~~~Nl-------dI~~p~NiF~~A----a~~GPiaIImDECMe~Lg~~---~~is~fFHAlPSKL~~ 228 (369)
T PF02456_consen 163 RPKFVEMSYDEATSPENL-------DITNPNNIFAQA----AKKGPIAIIMDECMEKLGSH---KSISKFFHALPSKLHD 228 (369)
T ss_pred cccceeecHhhhCCcccc-------CCCCchHHHHHH----HhcCCEEEEhHHHHHHhcCC---CChhHHHhcCcHHHhh
Confidence 332222111111 11111 112345555433 45789999999666544322 1111111112 22234
Q ss_pred HHHHHhCcEEEEEecC
Q 009230 445 RFAQHHACHVWFVAHP 460 (539)
Q Consensus 445 ~lA~~~~i~vi~~~q~ 460 (539)
++++=++-.|++|-||
T Consensus 229 rfp~CTgy~VfVVLHN 244 (369)
T PF02456_consen 229 RFPKCTGYYVFVVLHN 244 (369)
T ss_pred hccCCceeEEEEEecc
Confidence 4666688899999993
No 438
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=96.95 E-value=0.0099 Score=64.18 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 335 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G 367 (530)
T PRK15064 335 FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVG 367 (530)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344433 89999999999999999999887764
No 439
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.95 E-value=0.0068 Score=65.02 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV 54 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3555544 999999999999999999998877653
No 440
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.94 E-value=0.014 Score=63.59 Aligned_cols=172 Identities=20% Similarity=0.242 Sum_probs=88.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe---CCCCHHHHHHHHHHHhhCCC-------ccc
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS---MENKVREHARKLLEKHIKKP-------FFE 356 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s---~E~~~~~~~~r~~~~~~~~~-------~~~ 356 (539)
|+++.- +++|+.+.|.|++|+||||++.-++.-.--+ ...+++-. -+.+...+.+++ +....-+ ..-
T Consensus 345 l~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~-~G~I~idg~dI~~i~~~~lr~~I-~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 345 LKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT-SGEILIDGIDIRDISLDSLRKRI-GIVSQDPLLFSGTIREN 422 (567)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCeEEECCEehhhcCHHHHHHhc-cEEcccceeecccHHHH
Confidence 444443 9999999999999999999987666544322 34555411 123344343333 2211111 011
Q ss_pred cccCCCCCCCCHHHHHHHH------HHhhccc---eeEeecCCCC--CC--HHHHHHHHHHHHHHcCCcEEEEccccccc
Q 009230 357 ANYGGSAERMTVEEFEQGK------AWLSNTF---SLIRCENDSL--PS--IKWVLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~------~~l~~~~---~~i~~~~~~~--~~--~~~i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
+..+ .+..+++++.++. +.+.+.| ... .. ++. .+ ..+.+..+|.+. .+++++|+|.-+.-.
T Consensus 423 I~~g--~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~-vg-e~G~~LSgGQrQrlaiARall--~~~~ILILDEaTSal 496 (567)
T COG1132 423 IALG--RPDATDEEIEEALKLANAHEFIANLPDGYDTI-VG-ERGVNLSGGQRQRLAIARALL--RNPPILILDEATSAL 496 (567)
T ss_pred HhcC--CCCCCHHHHHHHHHHhChHHHHHhCcccccce-ec-CCCccCCHHHHHHHHHHHHHh--cCCCEEEEecccccc
Confidence 2222 1236777776653 2333322 111 11 121 12 233444444433 467999999544332
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+ ..++ ..+.+.++++.+. -++++++|.-+. +. .||.++.+...+
T Consensus 497 D----~~tE----~~I~~~l~~l~~~--rT~iiIaHRlst------------------i~-~aD~IiVl~~G~ 540 (567)
T COG1132 497 D----TETE----ALIQDALKKLLKG--RTTLIIAHRLST------------------IK-NADRIIVLDNGR 540 (567)
T ss_pred C----HHhH----HHHHHHHHHHhcC--CEEEEEeccHhH------------------HH-hCCEEEEEECCE
Confidence 1 1122 3455555555533 477789883221 23 499999998654
No 441
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.94 E-value=0.0055 Score=65.61 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMEN 336 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E~ 336 (539)
-.+|.|++|+|||.|+..++..+... .|.+|+|++.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 47899999999999999999887653 378999999764
No 442
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.94 E-value=0.0044 Score=69.27 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=83.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCC-------ccccccCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKP-------FFEANYGGSA 363 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~-------~~~i~~~~~~ 363 (539)
+++|+.+.|.|++|+|||||+.-++--.--. ...+.+-.- +.+...+.+.+ +....-+ .+.+..+ .
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~l~~~~~~~lr~~i-~~v~Q~~~lf~~TI~eNi~~~--~ 563 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT-EGSVLLDGVDIRQIDPADLRRNI-GYVPQDPRLFYGTLRDNIALG--A 563 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhcc-EEECCChhhhhhhHHHHHhCC--C
Confidence 8999999999999999999987665433222 233333221 12333332222 1111100 0011111 1
Q ss_pred CCCCHHHHHHHH------HHhhccce----eEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCC
Q 009230 364 ERMTVEEFEQGK------AWLSNTFS----LIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431 (539)
Q Consensus 364 ~~l~~~~~~~~~------~~l~~~~~----~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~ 431 (539)
+..+++++.++. +++...+. .+. +.....+- .+-+..++.+. .+++++++|.-+.-+ +
T Consensus 564 ~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~-e~G~~LSgGQrQRlalARall--~~p~iliLDE~Ts~L-------D 633 (694)
T TIGR03375 564 PYADDEEILRAAELAGVTEFVRRHPDGLDMQIG-ERGRSLSGGQRQAVALARALL--RDPPILLLDEPTSAM-------D 633 (694)
T ss_pred CCCCHHHHHHHHHHcChHHHHHhCcccccceec-CCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCC-------C
Confidence 135666665543 23322221 110 10111222 23344444433 478999999443322 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 432 ~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
. +.-..+.+.|+++.+ +.++|+++|.-. ....||.|+.|...
T Consensus 634 ~-~te~~i~~~l~~~~~--~~T~iiItHrl~-------------------~~~~~D~iivl~~G 675 (694)
T TIGR03375 634 N-RSEERFKDRLKRWLA--GKTLVLVTHRTS-------------------LLDLVDRIIVMDNG 675 (694)
T ss_pred H-HHHHHHHHHHHHHhC--CCEEEEEecCHH-------------------HHHhCCEEEEEeCC
Confidence 1 222456666666543 789999999321 12578999999643
No 443
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=96.93 E-value=0.0039 Score=58.38 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=34.6
Q ss_pred cEEEEE-cCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 298 ELTIVT-GVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 298 ~l~~i~-G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
.++.|+ +..|+||||++.++|..++...|.+|+.+.++....
T Consensus 36 ~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~ 78 (207)
T TIGR03018 36 NLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRP 78 (207)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCCh
Confidence 345554 688999999999999999874599999999997654
No 444
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.92 E-value=0.0071 Score=60.42 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
-++.|+|+||+|||||+..++..+... |.+|.+++.+.+..
T Consensus 57 ~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 57 LRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDPSST 97 (332)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCCCcc
Confidence 478899999999999999999888764 99999999997643
No 445
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.92 E-value=0.0051 Score=66.66 Aligned_cols=167 Identities=13% Similarity=0.085 Sum_probs=81.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCC---ccccccCCCCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYGGSAERMT 367 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~---~~~i~~~~~~~~l~ 367 (539)
+++|+.+.|.|++|+|||||+.-++-..-- ....+.+-..+ .+...+..++ +....-+ ...+..+ ....+
T Consensus 346 i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~~~~i-~~v~q~~~lf~~ti~~n--~~~~~ 421 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQP-QSGEILLDGKPVTAEQPEDYRKLF-SAVFTDFHLFDQLLGPE--GKPAN 421 (547)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEECCCCCHHHHhhhe-EEEecChhHHHHhhccc--cCchH
Confidence 899999999999999999998666533222 12334332222 2333333221 1110000 0001111 11233
Q ss_pred HHHHHHHHHHhhccceeEeecC----CCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHH
Q 009230 368 VEEFEQGKAWLSNTFSLIRCEN----DSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441 (539)
Q Consensus 368 ~~~~~~~~~~l~~~~~~i~~~~----~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~ 441 (539)
++++.++.+.+.-.. .+...+ ....+-.+ -+..++.+ -.+++++++|.-+.-+ +. +.-..+.+
T Consensus 422 ~~~~~~~~~~~~l~~-~~~~~~~~~~G~~LSgGq~qRl~lARal--~~~~~ililDE~ts~L-------D~-~~~~~i~~ 490 (547)
T PRK10522 422 PALVEKWLERLKMAH-KLELEDGRISNLKLSKGQKKRLALLLAL--AEERDILLLDEWAADQ-------DP-HFRREFYQ 490 (547)
T ss_pred HHHHHHHHHHcCCch-hhhccccCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEECCCCCC-------CH-HHHHHHHH
Confidence 444444443332111 110000 01222222 22233332 3578999999444322 22 22235566
Q ss_pred HHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 442 MVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 442 ~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
.|....++.+.+||+++|.-. ....||.++.+..
T Consensus 491 ~l~~~~~~~~~tvi~itH~~~-------------------~~~~~d~i~~l~~ 524 (547)
T PRK10522 491 VLLPLLQEMGKTIFAISHDDH-------------------YFIHADRLLEMRN 524 (547)
T ss_pred HHHHHHHhCCCEEEEEEechH-------------------HHHhCCEEEEEEC
Confidence 666555556899999999321 1246888888864
No 446
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.92 E-value=0.0083 Score=61.61 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+...|.||+|+||||++.-+.-
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHc
Confidence 89999999999999999999887764
No 447
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.92 E-value=0.013 Score=64.10 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
+.+|+.+.|.|++|+|||||+.-++--..
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 89999999999999999999887775543
No 448
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.89 E-value=0.012 Score=60.65 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=22.7
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.++.-++|.|+||+|||+++..+|..
T Consensus 175 Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 175 GIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4555567889999999999998887754
No 449
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=96.89 E-value=0.0084 Score=64.34 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=27.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl 311 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA 311 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 3555433 999999999999999999998887743
No 450
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.053 Score=55.91 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=50.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCCCH---HHHHHHHHHHhhCCCccccccCCCCCCCCHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENKV---REHARKLLEKHIKKPFFEANYGGSAERMTVE 369 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~~~---~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~ 369 (539)
+..|+.+.+.|++|+||||++.-++......++ .++.+++.+... .+. .+..+...|++.... .+..
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQ-L~~~a~ilGvp~~~v--------~~~~ 258 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQ-LRIYGKLLGVSVRSI--------KDIA 258 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHH-HHHHHHHcCCceecC--------CCHH
Confidence 467899999999999999999999986654433 577777766432 211 233455667776533 2334
Q ss_pred HHHHHHHHhhcc
Q 009230 370 EFEQGKAWLSNT 381 (539)
Q Consensus 370 ~~~~~~~~l~~~ 381 (539)
++..+...+.+.
T Consensus 259 dl~~al~~l~~~ 270 (420)
T PRK14721 259 DLQLMLHELRGK 270 (420)
T ss_pred HHHHHHHHhcCC
Confidence 444444555543
No 451
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.88 E-value=0.0025 Score=60.31 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
...+++++|.|++|+|||+++..++.....
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~l 56 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLM 56 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHHHH
Confidence 567899999999999999999999866443
No 452
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.88 E-value=0.037 Score=53.38 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK14266 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR 51 (250)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 444433 89999999999999999999888874
No 453
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.88 E-value=0.025 Score=52.31 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++-.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999998877654
No 454
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.011 Score=58.19 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=26.8
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 55 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G 87 (286)
T PRK14275 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINR 87 (286)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444433 99999999999999999999887764
No 455
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.86 E-value=0.011 Score=63.84 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=26.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+++.- +++|+.+.|.|++|+||||++.-++..
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 343333 899999999999999999998666543
No 456
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.86 E-value=0.009 Score=68.30 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=35.3
Q ss_pred cEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 412 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 412 ~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
-+||||.+..|+... ...+.+.+..|.+.++..|||+|+.+| +.
T Consensus 1142 IVVIIDE~AdLm~~~------~kevE~lI~rLAqkGRAaGIHLILATQRPs 1186 (1355)
T PRK10263 1142 IVVLVDEFADLMMTV------GKKVEELIARLAQKARAAGIHLVLATQRPS 1186 (1355)
T ss_pred EEEEEcChHHHHhhh------hHHHHHHHHHHHHHhhhcCeEEEEEecCcc
Confidence 389999999987531 124667888899999999999999999 54
No 457
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.86 E-value=0.011 Score=57.53 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+.+.|.|++|+|||||+.-++-.
T Consensus 24 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (261)
T PRK14263 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM 57 (261)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 444433 999999999999999999998876533
No 458
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.85 E-value=0.0069 Score=67.67 Aligned_cols=168 Identities=17% Similarity=0.147 Sum_probs=85.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCC---ccccccCC--CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKP---FFEANYGG--SAER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~---~~~i~~~~--~~~~ 365 (539)
+++|+.+.|.|++|+|||||+.-++-...-. ...+.+-.. +.+...+.+++ +....-+ ...++.+- ..+.
T Consensus 480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~-~G~I~idg~~i~~~~~~~~r~~i-~~v~q~~~lf~~ti~eNi~~~~~~ 557 (694)
T TIGR01846 480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ-HGQVLVDGVDLAIADPAWLRRQM-GVVLQENVLFSRSIRDNIALCNPG 557 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEehhhCCHHHHHHhC-eEEccCCeehhhhHHHHHhcCCCC
Confidence 8999999999999999999977666543322 334443322 23333333222 1111100 00111100 0123
Q ss_pred CCHHHHHHHH------HHhhccc----eeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 366 MTVEEFEQGK------AWLSNTF----SLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 366 l~~~~~~~~~------~~l~~~~----~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
.+++++.++. +.+...+ ..+. +.....+-.+ -+..++.+. .+++++++|.-+.-+ + .
T Consensus 558 ~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~-~~g~~LSgGq~qri~lARall--~~~~ililDEpts~L-------D-~ 626 (694)
T TIGR01846 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALV--GNPRILIFDEATSAL-------D-Y 626 (694)
T ss_pred CCHHHHHHHHHHcChHHHHHhCcCccCcEec-CCCCCCCHHHHHHHHHHHHHH--hCCCEEEEECCCcCC-------C-H
Confidence 5566655443 2222211 1111 1111222222 233334333 578999999444322 2 1
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
..-..+.+.|+.+. .+.++|+++|.-.. + ..+|.++.|...
T Consensus 627 ~~~~~i~~~l~~~~--~~~t~i~itH~~~~------------------~-~~~d~ii~l~~G 667 (694)
T TIGR01846 627 ESEALIMRNMREIC--RGRTVIIIAHRLST------------------V-RACDRIIVLEKG 667 (694)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEeCChHH------------------H-HhCCEEEEEeCC
Confidence 22345677777664 47899999993211 2 358999998653
No 459
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.85 E-value=0.0052 Score=67.34 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=85.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC---CHHHHHHHHHHHhhCCCc---cccccC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKPF---FEANYG 360 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~---~~~~~~~r~~~~~~~~~~---~~i~~~ 360 (539)
|+++.- +++|+.+.|.|++|+|||||+.-++--.-- ....+.+-.-+. +.+.+.+++ +....-+. ..++++
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-~~G~I~idg~~i~~~~~~~l~~~i-~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-TEGEIRLDGRPLSSLSHSVLRQGV-AMVQQDPVVLADTFLAN 434 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECCEEhhhCCHHHHHhhe-EEEccCCccccchHHHH
Confidence 443333 999999999999999999997766543322 234554433222 233333332 21111110 111110
Q ss_pred CC-CCCCCHHHHHHHHH------Hhhccc----eeEeecCCCCCCHH--HHHHHHHHHHHHcCCcEEEEccccccccCCC
Q 009230 361 GS-AERMTVEEFEQGKA------WLSNTF----SLIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 361 ~~-~~~l~~~~~~~~~~------~l~~~~----~~i~~~~~~~~~~~--~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~ 427 (539)
-. ....+++++.++.+ ++...+ ..+. +.....+-. +-+..+|.+. .+++++++|.-+.-+
T Consensus 435 I~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~-e~g~~LSGGqrQRialARaLl--~~~~illlDEpts~L---- 507 (592)
T PRK10790 435 VTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLG-EQGNNLSVGQKQLLALARVLV--QTPQILILDEATANI---- 507 (592)
T ss_pred HHhCCCCCHHHHHHHHHHcCcHHHHHhcccccccccc-CCCCCCCHHHHHHHHHHHHHH--hCCCEEEEeCCcccC----
Confidence 00 01345666555432 222211 1110 111122222 2333444443 478999999333222
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+. +.-..+.+.|+++.. +++||+++|.-. ....+|.|+.|..
T Consensus 508 ---D~-~t~~~i~~~l~~~~~--~~tvIivtHr~~-------------------~l~~~D~ii~l~~ 549 (592)
T PRK10790 508 ---DS-GTEQAIQQALAAVRE--HTTLVVIAHRLS-------------------TIVEADTILVLHR 549 (592)
T ss_pred ---CH-HHHHHHHHHHHHHhC--CCEEEEEecchH-------------------HHHhCCEEEEEEC
Confidence 22 223456677776643 689999999321 1235788888864
No 460
>PLN03140 ABC transporter G family member; Provisional
Probab=96.84 E-value=0.009 Score=71.45 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=32.6
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+..-|+++.+ +.+|++++|.|+||+|||||+.-++-..
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l 215 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL 215 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4566788878 9999999999999999999988877543
No 461
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.84 E-value=0.0059 Score=66.50 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+++|+.+.|.|++|+|||||+.-++-..
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 8999999999999999999987766443
No 462
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.84 E-value=0.0043 Score=58.41 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
++++|.|++|+|||||+..++....
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~ 55 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIAL 55 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH
Confidence 7999999999999999999976443
No 463
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.83 E-value=0.011 Score=64.52 Aligned_cols=174 Identities=17% Similarity=0.103 Sum_probs=86.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCC---ccccccC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKP---FFEANYG 360 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~---~~~i~~~ 360 (539)
|+.+.- +++|+.+.|.|++|+|||||+.-++...--. ...+.+-.. +.+...+.+. ++....-+ ...++++
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~ti~~N 433 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPIADYSEAALRQA-ISVVSQRVHLFSATLRDN 433 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEEhhhCCHHHHHhh-eeEEcccchhhcccHHHH
Confidence 444433 8999999999999999999987776544322 334443222 2233333222 11111111 0111111
Q ss_pred CC--CCCCCHHHHHHHHHH------hhccceeEe---ecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCC
Q 009230 361 GS--AERMTVEEFEQGKAW------LSNTFSLIR---CENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 361 ~~--~~~l~~~~~~~~~~~------l~~~~~~i~---~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~ 427 (539)
-. .+..+++++.++.+. +.. +.=+. -+.....+-.+ -+..++.+. .+++++++|.-+.-+
T Consensus 434 i~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall--~~~~ililDE~ts~l---- 506 (574)
T PRK11160 434 LLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALL--HDAPLLLLDEPTEGL---- 506 (574)
T ss_pred hhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCcccC----
Confidence 00 123466666555332 222 11000 00011122222 233333333 478999999444322
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+. +.-..+.+.|+.+. .+.++|+++|.-.. + ..||.++.|+..
T Consensus 507 ---D~-~t~~~i~~~l~~~~--~~~tviiitHr~~~------------------~-~~~d~i~~l~~G 549 (574)
T PRK11160 507 ---DA-ETERQILELLAEHA--QNKTVLMITHRLTG------------------L-EQFDRICVMDNG 549 (574)
T ss_pred ---CH-HHHHHHHHHHHHHc--CCCEEEEEecChhH------------------H-HhCCEEEEEeCC
Confidence 21 22345666676664 37899999993211 2 358999998753
No 464
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.82 E-value=0.0077 Score=56.89 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998877643
No 465
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.82 E-value=0.018 Score=61.39 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=71.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-------CCeEEEEeCC--CCHHHHHHHHHHHhhCCCccccccCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHA-------GWKFVLCSME--NKVREHARKLLEKHIKKPFFEANYGGSAE 364 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-------g~~vl~~s~E--~~~~~~~~r~~~~~~~~~~~~i~~~~~~~ 364 (539)
+++|+-.+|.|++|+|||+|...++-=.--.. +..++|++=+ ++...+ +..++ +.....
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtL-re~l~-----------YP~~~~ 483 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTL-REALC-----------YPNAAP 483 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccH-HHHHh-----------CCCCCC
Confidence 89999999999999999999887763221111 2234555433 333322 22221 222222
Q ss_pred CCCHHHHHHHHHH-----hhccceeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHH
Q 009230 365 RMTVEEFEQGKAW-----LSNTFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437 (539)
Q Consensus 365 ~l~~~~~~~~~~~-----l~~~~~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~ 437 (539)
.++++++.++..+ +.++.--.. .=+.-.+.++ -++.++- .-++|++||+|.-+.-+. +
T Consensus 484 ~~~d~~l~~vL~~vgL~~L~~rl~~~~-~W~~vLS~GEqQRlafARi--lL~kP~~v~LDEATsALD-------e----- 548 (604)
T COG4178 484 DFSDAELVAVLHKVGLGDLAERLDEED-RWDRVLSGGEQQRLAFARL--LLHKPKWVFLDEATSALD-------E----- 548 (604)
T ss_pred CCChHHHHHHHHHcCcHHHHHHHhccC-cHhhhcChhHHHHHHHHHH--HHcCCCEEEEecchhccC-------h-----
Confidence 4777776665322 222110000 0001111221 1222222 236899999995554332 2
Q ss_pred HHHHHHHHHHHH--hCcEEEEEec
Q 009230 438 QMLTMVKRFAQH--HACHVWFVAH 459 (539)
Q Consensus 438 ~~~~~Lk~lA~~--~~i~vi~~~q 459 (539)
+.-..|.++.++ .+++||-|+|
T Consensus 549 ~~e~~l~q~l~~~lp~~tvISV~H 572 (604)
T COG4178 549 ETEDRLYQLLKEELPDATVISVGH 572 (604)
T ss_pred HHHHHHHHHHHhhCCCCEEEEecc
Confidence 112334444556 7999999999
No 466
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.82 E-value=0.013 Score=64.01 Aligned_cols=167 Identities=19% Similarity=0.180 Sum_probs=84.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCC---ccccccCC---CCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYGG---SAE 364 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~---~~~i~~~~---~~~ 364 (539)
+++|+.+.|.|++|+|||||+.-++-..-- ....+.+-.-+ .+...+... ++....-+ ...++.+- ...
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-~~G~I~i~g~~i~~~~~~~~~~~-i~~v~Q~~~lf~~Ti~~Ni~~~~~~ 432 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEP-DSGQILLDGHDLADYTLASLRRQ-VALVSQDVVLFNDTIANNIAYGRTE 432 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEeHHhcCHHHHHhh-ceEEccCcccccccHHHHHhcCCCC
Confidence 899999999999999999998876644322 23444443322 233333222 12111111 11111110 011
Q ss_pred CCCHHHHHHHHH------Hhhccc----eeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCH
Q 009230 365 RMTVEEFEQGKA------WLSNTF----SLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432 (539)
Q Consensus 365 ~l~~~~~~~~~~------~l~~~~----~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~ 432 (539)
..+++++.++.+ ++.+.+ ..+. +.....+-.+ -+..+|.+. .+++++++|.-+.-+ +
T Consensus 433 ~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGqrQRiaLARall--~~~~illLDEpts~L-------D- 501 (571)
T TIGR02203 433 QADRAEIERALAAAYAQDFVDKLPLGLDTPIG-ENGVLLSGGQRQRLAIARALL--KDAPILILDEATSAL-------D- 501 (571)
T ss_pred CCCHHHHHHHHHHcChHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHHHHh--cCCCEEEEeCccccC-------C-
Confidence 456666655432 222211 1120 1111223333 333344333 478999999433222 2
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 433 ~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
...-..+++.|++++ -+.++|+++|... +...||.|+.+..
T Consensus 502 ~~~~~~i~~~L~~~~--~~~tiIiitH~~~-------------------~~~~~D~ii~l~~ 542 (571)
T TIGR02203 502 NESERLVQAALERLM--QGRTTLVIAHRLS-------------------TIEKADRIVVMDD 542 (571)
T ss_pred HHHHHHHHHHHHHHh--CCCEEEEEehhhH-------------------HHHhCCEEEEEeC
Confidence 222345677777664 3689999999422 2346888888853
No 467
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.82 E-value=0.015 Score=58.42 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=31.2
Q ss_pred cEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 412 RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 412 ~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
-++++++...-........+..+....+.+.|+++.+++|+++++|+|
T Consensus 271 l~~l~~p~~~~~~D~~R~~~~~~~R~~~~~ll~~~l~~~G~~~v~Vtg 318 (325)
T TIGR01526 271 LTLLLKPNTEWVDDGLRSLGSQKQRQEFQQLLKKLLDEYGVPFVVIES 318 (325)
T ss_pred EEEECCCCCCCccCCcccCchHHHHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 456677665533221122222234456777999999999999999999
No 468
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.82 E-value=0.0098 Score=61.87 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=31.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E 335 (539)
...+|.|++|+|||.|+..++..+..+. +..|+|++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4578999999999999999988877642 6889999754
No 469
>PRK13409 putative ATPase RIL; Provisional
Probab=96.82 E-value=0.0083 Score=65.26 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+||||++.-++-
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G 121 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSG 121 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999999876654
No 470
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.81 E-value=0.0097 Score=71.97 Aligned_cols=168 Identities=18% Similarity=0.161 Sum_probs=89.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCCc---cccccCCC-CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKPF---FEANYGGS-AERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~~---~~i~~~~~-~~~l 366 (539)
+.+|+.+.|.|++|+||||++.-+..-.-- ....+.+-..+ .+...+..++ +....-+. ..++.+-. .+..
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~G~I~IdG~dI~~i~~~~LR~~i-~iVpQdp~LF~gTIr~NLdp~~~~ 1386 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINES-AEGEIIIDGLNIAKIGLHDLRFKI-TIIPQDPVLFSGSLRMNLDPFSQY 1386 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccC-CCCeEEECCEEccccCHHHHHhcC-eEECCCCcccCccHHHHcCcccCC
Confidence 899999999999999999998877654322 23344443322 3445444443 22111111 12222211 2356
Q ss_pred CHHHHHHHHH------Hhhccc---e-eEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 367 TVEEFEQGKA------WLSNTF---S-LIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 367 ~~~~~~~~~~------~l~~~~---~-~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
+++++.++.+ .+...+ . .+ -+.....+- .+.+..+|.+. .+++++++|.-+.-++ .+++
T Consensus 1387 sdeei~~al~~a~l~~~I~~lp~GLdt~v-~e~G~~LSgGQrQrl~LARALL--r~~~ILiLDEaTSalD------~~Te 1457 (1522)
T TIGR00957 1387 SDEEVWWALELAHLKTFVSALPDKLDHEC-AEGGENLSVGQRQLVCLARALL--RKTKILVLDEATAAVD------LETD 1457 (1522)
T ss_pred CHHHHHHHHHHcCcHHHHhhCccCCCcee-cCCCCcCCHHHHHHHHHHHHHH--cCCCEEEEECCcccCC------HHHH
Confidence 7777665532 222211 1 11 011122332 34555555554 4689999995443321 1221
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
..+.+.|++.. -+++||+++|.-.. -..+|.|+.|...
T Consensus 1458 --~~Iq~~l~~~~--~~~TvI~IAHRl~t-------------------i~~~DrIlVld~G 1495 (1522)
T TIGR00957 1458 --NLIQSTIRTQF--EDCTVLTIAHRLNT-------------------IMDYTRVIVLDKG 1495 (1522)
T ss_pred --HHHHHHHHHHc--CCCEEEEEecCHHH-------------------HHhCCEEEEEECC
Confidence 23445555432 47999999992111 2368999999753
No 471
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.81 E-value=0.02 Score=62.13 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+.+.|.|++|+||||++.-++..
T Consensus 365 i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 365 IAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999998776643
No 472
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=96.80 E-value=0.0084 Score=64.75 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=76.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCC---ccccccC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYG 360 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~---~~~i~~~ 360 (539)
|+.+.- +++|+.+.|.|++|+|||||+.-++...-- ....+.+-.-+ .+...+.+++ +....-+ ...++++
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~I~~~g~~i~~~~~~~lr~~i-~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-TEGSIAVNGVPLADADADSWRDQI-AWVPQHPFLFAGTIAEN 415 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEECCEehhhCCHHHHHhhe-EEEcCCCcccCcCHHHH
Confidence 444333 999999999999999999998776543322 23344433222 3344433332 2111111 0111111
Q ss_pred CC--CCCCCHHHHHHHHH------Hhhccc---e-eEeecCCCCCCHH--HHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 361 GS--AERMTVEEFEQGKA------WLSNTF---S-LIRCENDSLPSIK--WVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 361 ~~--~~~l~~~~~~~~~~------~l~~~~---~-~i~~~~~~~~~~~--~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
-. .+..+++++.++.+ ++...+ . .+. +.....+-. +-+..+|.+. .+++++++|.-+.-+
T Consensus 416 i~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~-e~g~~LSgGq~qri~laRal~--~~~~ililDE~ts~l--- 489 (529)
T TIGR02857 416 IRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIG-EGGAGLSGGQAQRLALARAFL--RDAPLLLLDEPTAHL--- 489 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhc-cccccCCHHHHHHHHHHHHHh--cCCCEEEEeCccccc---
Confidence 00 12345666555432 222211 1 110 001111212 2233333332 478999999444322
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
+. +.-..+.+.|+.+. .+.++|+++|.
T Consensus 490 ----D~-~~~~~i~~~l~~~~--~~~t~i~itH~ 516 (529)
T TIGR02857 490 ----DA-ETEALVTEALRALA--QGRTVLLVTHR 516 (529)
T ss_pred ----CH-HHHHHHHHHHHHhc--CCCEEEEEecC
Confidence 11 22234666666554 57999999993
No 473
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.80 E-value=0.027 Score=53.07 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444433 9999999999999999999988776443
No 474
>PRK04017 hypothetical protein; Provisional
Probab=96.80 E-value=0.0034 Score=53.08 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=50.9
Q ss_pred CCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHHHH
Q 009230 123 ESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAE 202 (539)
Q Consensus 123 ~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~~~ 202 (539)
...++||||--|.-++.++|+...+-+.+|.+- .... + ......+.|+|..|.|.+|.+-++
T Consensus 22 ~g~vIVVEGk~D~~~L~~lGv~~~iI~t~g~~~-------~~~~-----e------~ia~~~r~VIILTD~D~~GekIr~ 83 (132)
T PRK04017 22 AGAPIIVEGKRDVESLRKLGVEGEIIKVSRTPL-------AEIA-----E------LIASRGKEVIILTDFDRKGEELAK 83 (132)
T ss_pred CCCEEEEeCccHHHHHHHcCCCccEEEECCeec-------chHH-----H------HHHhcCCeEEEEECCCcchHHHHH
Confidence 457899999999999999998533333333321 1000 0 123467899999999999999999
Q ss_pred HHHHHhcCC
Q 009230 203 ELARRVGRE 211 (539)
Q Consensus 203 ~~~~~l~~~ 211 (539)
++.+.|...
T Consensus 84 ~l~~~l~~~ 92 (132)
T PRK04017 84 KLSEYLQGY 92 (132)
T ss_pred HHHHHHHhC
Confidence 999988553
No 475
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.79 E-value=0.0064 Score=68.16 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=82.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC---CCHHHHHHHHHHHhhCCC---ccccccCC--CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME---NKVREHARKLLEKHIKKP---FFEANYGG--SAER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E---~~~~~~~~r~~~~~~~~~---~~~i~~~~--~~~~ 365 (539)
+++|+.+.|.|++|+|||||+.-++-...-. ...+.+-..+ .+...+.+++ +....-+ ...++.+- ..+.
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i-~~v~Q~~~lf~gTi~eNi~l~~~~ 579 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQPW-SGEILFDGIPREEIPREVLANSV-AMVDQDIFLFEGTVRDNLTLWDPT 579 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CcEEEECCEeHHHCCHHHHHhhe-eEEecCChhhhccHHHHhhCCCCC
Confidence 8999999999999999999987665443322 3344432211 2333333222 2111111 01111110 0123
Q ss_pred CCHHHHHHHHH------Hhhccc----eeEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 366 MTVEEFEQGKA------WLSNTF----SLIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 366 l~~~~~~~~~~------~l~~~~----~~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
.+++++.++.+ .+...+ ..+. +.....+- .+-+..+|.+. .+++++++|.-+.-+ +.
T Consensus 580 ~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~-e~G~~LSGGQrQRiaLARall--~~p~iliLDEptS~L-------D~- 648 (710)
T TIGR03796 580 IPDADLVRACKDAAIHDVITSRPGGYDAELA-EGGANLSGGQRQRLEIARALV--RNPSILILDEATSAL-------DP- 648 (710)
T ss_pred CCHHHHHHHHHHhCCHHHHHhCcCcccceec-cCCCCCCHHHHHHHHHHHHHh--hCCCEEEEECccccC-------CH-
Confidence 56666655432 222221 1111 11111221 23334444443 478999999444322 21
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
..-..+++.|++ .+.++|+++|.-. .-..||.++.|..
T Consensus 649 ~te~~i~~~l~~----~~~T~IiitHrl~-------------------~i~~~D~Iivl~~ 686 (710)
T TIGR03796 649 ETEKIIDDNLRR----RGCTCIIVAHRLS-------------------TIRDCDEIIVLER 686 (710)
T ss_pred HHHHHHHHHHHh----cCCEEEEEecCHH-------------------HHHhCCEEEEEeC
Confidence 222356666653 5899999999321 1245899999964
No 476
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.78 E-value=0.0084 Score=65.50 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+.+.|.|++|+|||||+.-++..
T Consensus 358 i~~G~~~~ivG~sGsGKSTL~~ll~g~ 384 (585)
T TIGR01192 358 AKAGQTVAIVGPTGAGKTTLINLLQRV 384 (585)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHccC
Confidence 899999999999999999998766643
No 477
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=96.77 E-value=0.016 Score=61.86 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=26.9
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 276 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 276 LHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred EeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 444433 99999999999999999999888775
No 478
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.77 E-value=0.0019 Score=54.58 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
.++|+|+||+||||++.+++... |.+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~----~~~~i 28 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL----GFPVI 28 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH----TCEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH----CCeEE
Confidence 47899999999999998887654 66665
No 479
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.77 E-value=0.012 Score=57.02 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-..
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 444433 9999999999999999999988776543
No 480
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.0061 Score=57.89 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=32.1
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
..|+++..|.=+.-+. ...-.+++..|.+|.++.++||+-|+|+
T Consensus 145 t~P~LLLmDEPLaSLD--------~~RK~EilpylERL~~e~~IPIlYVSHS 188 (352)
T COG4148 145 TAPELLLMDEPLASLD--------LPRKREILPYLERLRDEINIPILYVSHS 188 (352)
T ss_pred cCCCeeeecCchhhcc--------cchhhHHHHHHHHHHHhcCCCEEEEecC
Confidence 4689999993322111 1123578899999999999999999993
No 481
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.76 E-value=0.0037 Score=60.35 Aligned_cols=66 Identities=24% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+++.++..++...++|....+..+++
T Consensus 48 ~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev 113 (274)
T cd01133 48 TKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREG 113 (274)
T ss_pred CcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHH
Confidence 344578999999999888999999999999999999999999999887544456666666666554
No 482
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0071 Score=58.52 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=70.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 372 (539)
+.-..|+++.||||+|||+++-.+|.++..+.. .----.-.|.....++.++.+- +| +
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsE-Sg-------------K------- 232 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSE-SG-------------K------- 232 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhh-hh-------------h-------
Confidence 555679999999999999999998888765411 0000112366666666665431 11 1
Q ss_pred HHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCC-cEEEEccccccccCCC---CC---CCHHHHHHHHHHHHHH
Q 009230 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGV-RGLVIDPYNELDHQRP---VS---QTETEYVSQMLTMVKR 445 (539)
Q Consensus 373 ~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~-~~vvID~~~~l~~~~~---~~---~~~~~~~~~~~~~Lk~ 445 (539)
.+..+...|..++...|+ =+|.||-.-.|...+. ++ .+.-..+..++.+|-+
T Consensus 233 ---------------------lV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr 291 (423)
T KOG0744|consen 233 ---------------------LVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR 291 (423)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH
Confidence 122233333334333332 2344554433322110 11 1223456778888888
Q ss_pred HHHHhCcEEEEEec
Q 009230 446 FAQHHACHVWFVAH 459 (539)
Q Consensus 446 lA~~~~i~vi~~~q 459 (539)
+-+.-|+-++.++.
T Consensus 292 lK~~~NvliL~TSN 305 (423)
T KOG0744|consen 292 LKRYPNVLILATSN 305 (423)
T ss_pred hccCCCEEEEeccc
Confidence 88888988888776
No 483
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.75 E-value=0.0058 Score=58.64 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=41.4
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-Ce-EEEEeCC--CCHHHHHHHH
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WK-FVLCSME--NKVREHARKL 345 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~-vl~~s~E--~~~~~~~~r~ 345 (539)
.+|-++.+.+|+-++|.|++|+||||++..++.+....+. .. +++.+.| ....++...+
T Consensus 6 ~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 6 VVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred heeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh
Confidence 4565666899999999999999999999888877655322 22 3344555 4555565554
No 484
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=96.74 E-value=0.011 Score=63.48 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=27.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-.
T Consensus 275 ~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~ 309 (500)
T TIGR02633 275 RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA 309 (500)
T ss_pred ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC
Confidence 3454433 999999999999999999998877643
No 485
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.74 E-value=0.0047 Score=60.32 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=36.3
Q ss_pred cCCC-cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEE-EeCCCCHHHHHHHHHHHhhCCC
Q 009230 294 VLPG-ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL-CSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 294 l~~G-~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~-~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
++++ .+++|.|++|+||||++..++...... +..+.+ +....++.++...+. ...|.+
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~~~~~~~~~~~~~~~~l~~i~-~~lG~~ 98 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RVVAAKLVNTRVDAEDLLRMVA-ADFGLE 98 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-CeEEeeeeCCCCCHHHHHHHHH-HHcCCC
Confidence 4444 489999999999999999987665422 333322 345566666654443 333443
No 486
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.73 E-value=0.0066 Score=55.29 Aligned_cols=58 Identities=26% Similarity=0.309 Sum_probs=41.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccccc
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANY 359 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~ 359 (539)
+++|+|..|+|||||+.+++. ....|.++.++-.|+....+=.+++.. .+++...+..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~--~~~~~~~~~vI~ne~g~~~iD~~~l~~-~~~~v~~l~~ 59 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK--RNRQGERVAVIVNEFGEVNIDAELLQE-DGVPVVELNN 59 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTTS-EEEEECSTTSTHHHHHHHHT-TT-EEEEECT
T ss_pred EEEEEcCCCCCHHHHHHHHHH--HhcCCceeEEEEccccccccchhhhcc-cceEEEEecC
Confidence 689999999999999999997 333599999999999866555555543 2555555543
No 487
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.73 E-value=0.0026 Score=57.88 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=35.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKL 345 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~ 345 (539)
+..+.-.+|.|+||+|||.++..++.+++.. |.+|+|++. .+++.++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~----~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITA----SDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEH----HHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeec----Cceeccc
Confidence 6667788999999999999999999998884 999999974 3455554
No 488
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.73 E-value=0.12 Score=48.08 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=33.6
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.|+|.-|+||||++.-++..++.++|+.|+.+..+.+
T Consensus 3 IaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd 40 (255)
T COG3640 3 IAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPD 40 (255)
T ss_pred EEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCC
Confidence 67999999999999999899998876799999987753
No 489
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.73 E-value=0.011 Score=66.40 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=82.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCC---ccc----cccCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKP---FFE----ANYGGSA 363 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~---~~~----i~~~~~~ 363 (539)
+++|+.+.|.|++|+|||||+.-++.-..-. ...+.+-.. +.+...+.+++ +....-+ ... +..+ ..
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~-~G~I~idg~~i~~~~~~~lr~~i-~~v~Q~~~lf~gTI~eNi~l~-~~ 573 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLRQFI-NYLPQEPYIFSGSILENLLLG-AK 573 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCCC-CcEEEECCEEHHHcCHHHHHHhe-EEEecCceehhHHHHHHHhcc-CC
Confidence 8999999999999999999987665433222 233333221 23333333322 1111100 001 1111 01
Q ss_pred CCCCHHHHHHHHH------Hhhccce----eEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCC
Q 009230 364 ERMTVEEFEQGKA------WLSNTFS----LIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQT 431 (539)
Q Consensus 364 ~~l~~~~~~~~~~------~l~~~~~----~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~ 431 (539)
...+++++.++.+ .+...+. .+. +.....+- .+-+..+|.+. .+++++++|.-+.-+ +
T Consensus 574 ~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialARall--~~p~iliLDE~Ts~L-------D 643 (708)
T TIGR01193 574 ENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALARALL--TDSKVLILDESTSNL-------D 643 (708)
T ss_pred CCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCccccC-------C
Confidence 2356666655432 2322221 110 11111222 23334444433 478999999444322 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 432 ETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 432 ~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
. +.-..+.+.|+.+ .+.++|+++|.-. ....||.++.|..
T Consensus 644 ~-~te~~i~~~L~~~---~~~T~IiitHr~~-------------------~~~~~D~i~~l~~ 683 (708)
T TIGR01193 644 T-ITEKKIVNNLLNL---QDKTIIFVAHRLS-------------------VAKQSDKIIVLDH 683 (708)
T ss_pred H-HHHHHHHHHHHHh---cCCEEEEEecchH-------------------HHHcCCEEEEEEC
Confidence 2 2224566667654 3789999999321 1246899998864
No 490
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.72 E-value=0.017 Score=51.81 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCCCC-HHHHHHHHHHHhhC--CCccccccCCCCCCCCHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENK-VREHARKLLEKHIK--KPFFEANYGGSAERMTVEEF 371 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E~~-~~~~~~r~~~~~~~--~~~~~i~~~~~~~~l~~~~~ 371 (539)
.|.-.+|.|++|+|||+.+.-.+.+...+. ...++++..... .++...++...... +....+. + ..+..
T Consensus 13 ~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~-~----~~~~~-- 85 (169)
T PF00270_consen 13 SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH-G----GQSIS-- 85 (169)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES-T----TSCHH--
T ss_pred cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccccc-c----ccccc--
Confidence 466788999999999999888777766652 237888876644 44555555443332 1222221 1 23322
Q ss_pred HHHHHHhhc-cceeEeecCCCCCCHHHHHHHHHHH-HHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 372 EQGKAWLSN-TFSLIRCENDSLPSIKWVLDLAKAA-VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 372 ~~~~~~l~~-~~~~i~~~~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
.....++.. ..+++. +++.+...+... ..-..+++||||....+... .....+..+++.++. .
T Consensus 86 ~~~~~~~~~~~~ilv~-------T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-----~~~~~~~~i~~~~~~---~ 150 (169)
T PF00270_consen 86 EDQREVLSNQADILVT-------TPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-----TFRAMLKSILRRLKR---F 150 (169)
T ss_dssp HHHHHHHHTTSSEEEE-------EHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-----THHHHHHHHHHHSHT---T
T ss_pred cccccccccccccccc-------CcchhhccccccccccccceeeccCcccccccc-----cHHHHHHHHHHHhcC---C
Confidence 111223332 233331 456555555430 01133899999966665531 222233344443332 2
Q ss_pred hCcEEEEEec
Q 009230 450 HACHVWFVAH 459 (539)
Q Consensus 450 ~~i~vi~~~q 459 (539)
.++++++++-
T Consensus 151 ~~~~~i~~SA 160 (169)
T PF00270_consen 151 KNIQIILLSA 160 (169)
T ss_dssp TTSEEEEEES
T ss_pred CCCcEEEEee
Confidence 2788888876
No 491
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.034 Score=57.74 Aligned_cols=176 Identities=20% Similarity=0.152 Sum_probs=88.6
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHH--HHHhhCCCccccccC
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKL--LEKHIKKPFFEANYG 360 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~--~~~~~~~~~~~i~~~ 360 (539)
.|+.+.- +.+||=+.|.|++||||||++.-++.+.--+ ...+.+=..|+. +..+.+.+ +.+-...=...++++
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~-~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC-CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 3444443 9999999999999999999988777655443 234444443432 33333333 111111111111111
Q ss_pred C--CCCCCCHHHHHHHHHH------hhccc----eeEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 361 G--SAERMTVEEFEQGKAW------LSNTF----SLIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 361 ~--~~~~l~~~~~~~~~~~------l~~~~----~~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
- ..+.-++|++.++.+. +.+.+ -++ + ++...+ .+.....-.-+--++..++++|-=+.=.
T Consensus 432 L~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~l--g-e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegL--- 505 (573)
T COG4987 432 LRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWL--G-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGL--- 505 (573)
T ss_pred HhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchh--c-cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccC---
Confidence 0 1234677877665332 22221 122 1 222211 2322211111123488999999222110
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
+..++ .++++.|..-++ +-++++++| -+.. ..+|.|+++..-+
T Consensus 506 -D~~TE----~~vL~ll~~~~~--~kTll~vTHrL~~l--------------------e~~drIivl~~Gk 549 (573)
T COG4987 506 -DPITE----RQVLALLFEHAE--GKTLLMVTHRLRGL--------------------ERMDRIIVLDNGK 549 (573)
T ss_pred -ChhhH----HHHHHHHHHHhc--CCeEEEEecccccH--------------------hhcCEEEEEECCe
Confidence 11223 345555544443 788999988 5443 3678888887654
No 492
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=96.70 E-value=0.0048 Score=59.46 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=40.9
Q ss_pred CCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceE
Q 009230 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 489 (539)
Q Consensus 410 ~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~v 489 (539)
.++++++|.-+.-+ + ......+.+.|+.++++ +.+||+++|... +...||.+
T Consensus 177 ~p~~lllDEPt~~L-------D-~~~~~~l~~~i~~~~~~-g~~vi~isH~~~-------------------~~~~~d~i 228 (247)
T cd03275 177 PAPFFVLDEVDAAL-------D-NTNVGKVASYIREQAGP-NFQFIVISLKEE-------------------FFSKADAL 228 (247)
T ss_pred CCCEEEEecccccC-------C-HHHHHHHHHHHHHhccC-CcEEEEEECCHH-------------------HHhhCCeE
Confidence 47899999333222 2 23345667777777654 899999999421 23479999
Q ss_pred EEEEeCCC
Q 009230 490 IVIHRNRD 497 (539)
Q Consensus 490 l~l~r~~~ 497 (539)
+.++++.+
T Consensus 229 ~~~~~~~~ 236 (247)
T cd03275 229 VGVYRDQE 236 (247)
T ss_pred EEEEecCC
Confidence 99998875
No 493
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.70 E-value=0.03 Score=57.30 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=38.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhc-C----CeEEEEeCCC--CHHHHHHHHHHHhh
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHA-G----WKFVLCSMEN--KVREHARKLLEKHI 350 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~-g----~~vl~~s~E~--~~~~~~~r~~~~~~ 350 (539)
..++|.|+||+|||+++..++.++.... + ..++|+.+.. +...++.++.....
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLR 100 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999988765421 1 5788888642 35567777665543
No 494
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.69 E-value=0.017 Score=54.43 Aligned_cols=35 Identities=26% Similarity=0.205 Sum_probs=28.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWK 328 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~ 328 (539)
+.+|++++|.|++|+|||+|+..++..... +.|..
T Consensus 28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~ 63 (222)
T cd03287 28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSF 63 (222)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 678999999999999999999999884433 33543
No 495
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=96.68 E-value=0.0035 Score=56.33 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=40.4
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe-CC---CCHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-ME---NKVREHAR 343 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s-~E---~~~~~~~~ 343 (539)
||..|+++.- +.+|+|-+|.||.|.|||||+--|.-..-- ....|+|-. .+ ++..++++
T Consensus 17 GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-QEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-CcceEEEcCchhhccCCHHHHHH
Confidence 6888888876 999999999999999999996655433221 124555544 44 33444443
No 496
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.68 E-value=0.012 Score=62.19 Aligned_cols=38 Identities=24% Similarity=0.205 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E 335 (539)
.-.+|.|+||+|||.|+..++..+..+. +..|+|++.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 3578999999999999999998877642 6789999865
No 497
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.009 Score=61.52 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=27.4
Q ss_pred hhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 291 LYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 291 ~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+=| |++| +++.||||+|||.|+..+|-. .|.|..|.|.
T Consensus 332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGE----A~VPFF~~sG 370 (752)
T KOG0734|consen 332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGE----AGVPFFYASG 370 (752)
T ss_pred ccCcCCCc--eEEeCCCCCchhHHHHHhhcc----cCCCeEeccc
Confidence 335 9998 779999999999997665533 3666655543
No 498
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.026 Score=59.29 Aligned_cols=169 Identities=17% Similarity=0.151 Sum_probs=85.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE---eCCCCHHHHHHHHHHHhhCCC---ccccccCC--CCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC---SMENKVREHARKLLEKHIKKP---FFEANYGG--SAER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~---s~E~~~~~~~~r~~~~~~~~~---~~~i~~~~--~~~~ 365 (539)
+++|+++.|.|++|+||||++.-++--..-. .....+= .-+.+.+...+.+ +....-+ ...++.+- ....
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~-~G~I~vng~~l~~l~~~~~~k~i-~~v~Q~p~lf~gTireNi~l~~~~ 421 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWRKQI-SWVSQNPYLFAGTIRENILLARPD 421 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCC-CceEEECCccccccCHHHHHhHe-eeeCCCCccccccHHHHhhccCCc
Confidence 9999999999999999999987666443322 2222222 1234455444443 2222222 11222110 0123
Q ss_pred CCHHHHHHHHH------Hhhc--cce-eEeecCCCCCCHHHHH--HHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 366 MTVEEFEQGKA------WLSN--TFS-LIRCENDSLPSIKWVL--DLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 366 l~~~~~~~~~~------~l~~--~~~-~i~~~~~~~~~~~~i~--~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
.+++++.++.+ ++.. ... .+ -+.....+..+.- ..+|.+ -.+++++++|--+.=++ .+++
T Consensus 422 ~s~e~i~~al~~a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QRlaLARAl--l~~~~l~llDEpTA~LD----~etE-- 492 (559)
T COG4988 422 ASDEEIIAALDQAGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQRLALARAL--LSPASLLLLDEPTAHLD----AETE-- 492 (559)
T ss_pred CCHHHHHHHHHHhcHHHhhcCCCcccchh-ccCCCCCCHHHHHHHHHHHHh--cCCCCEEEecCCccCCC----HhHH--
Confidence 56677665532 2222 111 11 0111122333322 222222 24589999993332111 1122
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
..+.+.|.+++++ -+|++++| .- ....+|.|+.|..-+.
T Consensus 493 --~~i~~~l~~l~~~--ktvl~itHrl~--------------------~~~~~D~I~vld~G~l 532 (559)
T COG4988 493 --QIILQALQELAKQ--KTVLVITHRLE--------------------DAADADRIVVLDNGRL 532 (559)
T ss_pred --HHHHHHHHHHHhC--CeEEEEEcChH--------------------HHhcCCEEEEecCCce
Confidence 3466777777776 67888888 21 2347899999886553
No 499
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.67 E-value=0.03 Score=56.39 Aligned_cols=148 Identities=16% Similarity=0.183 Sum_probs=78.2
Q ss_pred cccCchhhhhhhc-----cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-------cCCeEEEEe--------CCCCHHH
Q 009230 281 ISTGWRALNELYN-----VLPGELTIVTGVPNSGKSEWIDALICNINEH-------AGWKFVLCS--------MENKVRE 340 (539)
Q Consensus 281 i~tg~~~LD~~~~-----l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-------~g~~vl~~s--------~E~~~~~ 340 (539)
+.+|+++-+-++. +-..+-+.|.||.|+|||||+.-+.-.+--+ +..++.||. .|.++.+
T Consensus 592 VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~E 671 (807)
T KOG0066|consen 592 VTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVE 671 (807)
T ss_pred ccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHH
Confidence 3466766665553 3444678999999999999987766543322 335677763 5666666
Q ss_pred HHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHH--hhccceeEe-ecCCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Q 009230 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAW--LSNTFSLIR-CENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417 (539)
Q Consensus 341 ~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~--l~~~~~~i~-~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID 417 (539)
.+.|.. .+++ ++.+..... |..+-+.|. ++-.+....... .+ .+ .-.+++++|+|
T Consensus 672 yLqr~F----Nlpy--------------q~ARK~LG~fGL~sHAHTikikdLSGGQKaRVa--la-eL-al~~PDvlILD 729 (807)
T KOG0066|consen 672 YLQRKF----NLPY--------------QEARKQLGTFGLASHAHTIKIKDLSGGQKARVA--LA-EL-ALGGPDVLILD 729 (807)
T ss_pred HHHHhc----CCCh--------------HHHHHHhhhhhhhhccceEeeeecCCcchHHHH--HH-HH-hcCCCCEEEec
Confidence 655542 2222 222221111 112222221 222333322221 11 12 23579999999
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCC
Q 009230 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQ 462 (539)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~ 462 (539)
.-+.-+ +-+ -+..|...-.+|+-.||+|+| -|-
T Consensus 730 EPTNNL--------DIE----SIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 730 EPTNNL--------DIE----SIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred CCCCCc--------chh----hHHHHHHHHHhccCcEEEEecccce
Confidence 322111 112 234444445689999999999 553
No 500
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.67 E-value=0.015 Score=70.07 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=79.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC---CHHHHHHHHHHHhhCCC---ccccccCC-CCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN---KVREHARKLLEKHIKKP---FFEANYGG-SAERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~---~~~~~~~r~~~~~~~~~---~~~i~~~~-~~~~l 366 (539)
+++|+-+.|.|++|+|||||+.-++.-.. . ...+++-..+. +...+..++ +....-+ ...++.+- .....
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~-~G~I~IdG~di~~i~~~~lR~~i-s~IpQdp~LF~GTIR~NLdp~~~~ 1318 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-T-EGEIQIDGVSWNSVTLQTWRKAF-GVIPQKVFIFSGTFRKNLDPYEQW 1318 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-C-CcEEEECCEEcccCCHHHHHhce-EEEeCCCccCccCHHHHhCcccCC
Confidence 89999999999999999999988876653 3 45555444333 344444433 2111111 01122111 11235
Q ss_pred CHHHHHHHHHH------hhccc---e-eEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 367 TVEEFEQGKAW------LSNTF---S-LIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 367 ~~~~~~~~~~~------l~~~~---~-~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
+++++.++.+. +...+ . .+ -+.....+- .+.+..+|.+. .+++++++|--+.-++ .+
T Consensus 1319 tdeei~~aL~~~~L~~~i~~lp~GLdt~v-~e~G~nLSgGQrQrL~LARALL--r~~~ILlLDEaTS~lD--------~~ 1387 (1490)
T TIGR01271 1319 SDEEIWKVAEEVGLKSVIEQFPDKLDFVL-VDGGYVLSNGHKQLMCLARSIL--SKAKILLLDEPSAHLD--------PV 1387 (1490)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccccc-ccCCCcCCHHHHHHHHHHHHHh--CCCCEEEEeCCcccCC--------HH
Confidence 67776555332 22211 1 11 011112333 34555555544 4689999994443321 11
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
.-..+.+.|+... -+++||+++|
T Consensus 1388 Te~~I~~~L~~~~--~~~TvI~IaH 1410 (1490)
T TIGR01271 1388 TLQIIRKTLKQSF--SNCTVILSEH 1410 (1490)
T ss_pred HHHHHHHHHHHHc--CCCEEEEEec
Confidence 2234556665543 4799999999
Done!