Query 009230
Match_columns 539
No_of_seqs 318 out of 2579
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 21:47:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q57_A DNA primase/helicase; d 100.0 1.1E-67 3.6E-72 561.9 38.3 453 52-538 14-482 (503)
2 4a1f_A DNAB helicase, replicat 100.0 8.9E-47 3E-51 374.4 18.2 267 261-538 9-317 (338)
3 3bh0_A DNAB-like replicative h 100.0 6E-42 2.1E-46 341.2 28.0 272 256-538 26-308 (315)
4 3bgw_A DNAB-like replicative h 100.0 1.6E-41 5.5E-46 352.1 29.1 272 256-538 155-437 (444)
5 2q6t_A DNAB replication FORK h 100.0 1.6E-39 5.4E-44 339.3 33.8 254 275-538 177-440 (444)
6 2r6a_A DNAB helicase, replicat 100.0 1.5E-37 5.3E-42 325.2 32.8 266 262-538 168-441 (454)
7 1cr0_A DNA primase/helicase; R 100.0 1.7E-30 5.9E-35 257.2 25.6 264 264-539 2-276 (296)
8 1nui_A DNA primase/helicase; z 100.0 5.7E-29 2E-33 239.8 12.2 186 40-247 66-255 (255)
9 2zts_A Putative uncharacterize 100.0 7.1E-28 2.4E-32 232.2 16.2 222 276-520 7-230 (251)
10 2au3_A DNA primase; zinc ribbo 100.0 2.8E-28 9.7E-33 249.9 12.7 178 49-251 123-350 (407)
11 4edg_A DNA primase; catalytic 99.9 1.8E-27 6.3E-32 233.5 13.2 191 36-251 16-259 (329)
12 1dd9_A DNA primase, DNAG; topr 99.9 1.3E-26 4.5E-31 229.2 17.9 180 47-251 39-272 (338)
13 1xp8_A RECA protein, recombina 99.9 7.8E-23 2.7E-27 205.8 17.3 223 276-536 50-288 (366)
14 2i1q_A DNA repair and recombin 99.9 2E-22 6.9E-27 201.5 19.4 237 240-521 47-311 (322)
15 2z43_A DNA repair and recombin 99.9 3.1E-22 1.1E-26 199.9 20.3 236 240-520 56-309 (324)
16 1v5w_A DMC1, meiotic recombina 99.9 5.6E-22 1.9E-26 199.4 19.9 243 240-521 71-329 (343)
17 2dr3_A UPF0273 protein PH0284; 99.9 2E-21 7E-26 186.4 22.4 213 279-520 3-219 (247)
18 3cmw_A Protein RECA, recombina 99.9 5.4E-22 1.8E-26 229.9 19.8 214 276-527 708-936 (1706)
19 2cvh_A DNA repair and recombin 99.9 9.3E-21 3.2E-25 178.5 22.8 201 280-521 1-206 (220)
20 3cmu_A Protein RECA, recombina 99.9 5.6E-22 1.9E-26 231.7 16.9 222 276-535 359-595 (2050)
21 1u94_A RECA protein, recombina 99.9 4.8E-21 1.6E-25 192.2 20.4 206 276-519 39-259 (356)
22 3cmw_A Protein RECA, recombina 99.9 2.1E-21 7.2E-26 225.0 19.4 212 277-526 360-586 (1706)
23 3lda_A DNA repair protein RAD5 99.9 9.4E-21 3.2E-25 192.7 18.3 242 240-520 127-382 (400)
24 1nlf_A Regulatory protein REPA 99.8 5.8E-20 2E-24 179.8 20.5 232 279-537 11-262 (279)
25 3hr8_A Protein RECA; alpha and 99.8 6.4E-20 2.2E-24 183.1 19.5 214 278-529 39-267 (356)
26 2zr9_A Protein RECA, recombina 99.8 1.5E-19 5.2E-24 181.3 22.2 206 276-519 37-257 (349)
27 1n0w_A DNA repair protein RAD5 99.8 1.8E-19 6E-24 172.5 19.2 209 278-520 3-228 (243)
28 2w0m_A SSO2452; RECA, SSPF, un 99.8 2.3E-18 7.8E-23 163.5 23.2 207 279-520 3-214 (235)
29 3io5_A Recombination and repai 99.8 1.4E-17 4.9E-22 160.7 18.2 212 278-529 4-238 (333)
30 4a74_A DNA repair and recombin 99.7 2.5E-17 8.5E-22 156.1 16.2 199 277-521 3-220 (231)
31 3cmu_A Protein RECA, recombina 99.7 4.3E-17 1.5E-21 191.0 18.0 182 276-495 708-901 (2050)
32 1pzn_A RAD51, DNA repair and r 99.7 1.6E-16 5.6E-21 159.6 17.4 239 240-520 79-337 (349)
33 2ehv_A Hypothetical protein PH 99.6 1.1E-14 3.7E-19 139.6 20.1 218 277-519 8-229 (251)
34 1tf7_A KAIC; homohexamer, hexa 99.6 1.6E-14 5.4E-19 153.6 21.5 202 277-519 259-464 (525)
35 3bs4_A Uncharacterized protein 99.6 9.4E-15 3.2E-19 139.0 15.8 222 280-531 2-246 (260)
36 2vhj_A Ntpase P4, P4; non- hyd 99.2 7.2E-11 2.5E-15 114.7 9.8 124 280-459 105-234 (331)
37 1tf7_A KAIC; homohexamer, hexa 99.1 1.1E-08 3.7E-13 108.6 23.3 202 277-516 17-228 (525)
38 2b8t_A Thymidine kinase; deoxy 98.8 8E-09 2.7E-13 96.1 6.3 145 294-496 9-153 (223)
39 1t6t_1 Putative protein; struc 98.5 1.2E-07 4.1E-12 77.4 6.6 72 124-215 21-93 (118)
40 3gfo_A Cobalt import ATP-bindi 98.0 3.4E-05 1.2E-09 74.1 10.8 61 408-494 159-219 (275)
41 3ec2_A DNA replication protein 97.9 4.9E-05 1.7E-09 68.1 10.1 42 294-335 35-76 (180)
42 2fcj_A Small toprim domain pro 97.9 7.6E-05 2.6E-09 61.0 9.7 101 123-251 4-106 (119)
43 1w4r_A Thymidine kinase; type 97.9 1.1E-05 3.6E-10 72.7 4.8 134 294-495 17-153 (195)
44 2j9r_A Thymidine kinase; TK1, 97.8 5.7E-05 1.9E-09 69.0 8.7 141 294-496 25-165 (214)
45 1xx6_A Thymidine kinase; NESG, 97.8 1.2E-05 4.3E-10 72.7 4.0 140 294-495 5-144 (191)
46 3tui_C Methionine import ATP-b 97.8 0.00017 5.7E-09 71.8 12.4 60 409-494 180-239 (366)
47 3rlf_A Maltose/maltodextrin im 97.8 0.00016 5.4E-09 72.4 12.2 54 397-460 140-193 (381)
48 4g1u_C Hemin import ATP-bindin 97.8 4.2E-05 1.4E-09 73.2 7.4 60 410-495 165-224 (266)
49 3tif_A Uncharacterized ABC tra 97.8 0.00014 4.9E-09 68.2 11.0 60 408-494 161-220 (235)
50 3dm5_A SRP54, signal recogniti 97.7 0.00067 2.3E-08 69.2 16.2 41 296-337 99-139 (443)
51 1g6h_A High-affinity branched- 97.7 8.7E-05 3E-09 70.7 9.0 60 408-494 169-228 (257)
52 1z47_A CYSA, putative ABC-tran 97.7 0.00028 9.7E-09 70.0 12.5 45 408-460 161-205 (355)
53 2r8r_A Sensor protein; KDPD, P 97.7 0.00054 1.8E-08 63.1 13.4 41 295-336 3-44 (228)
54 3e2i_A Thymidine kinase; Zn-bi 97.7 6.2E-05 2.1E-09 68.6 6.5 141 294-496 25-165 (219)
55 2orv_A Thymidine kinase; TP4A 97.6 0.00011 3.9E-09 67.7 7.8 137 295-496 17-153 (234)
56 1vpl_A ABC transporter, ATP-bi 97.6 0.00032 1.1E-08 66.5 11.3 32 287-318 30-62 (256)
57 1v43_A Sugar-binding transport 97.6 8.5E-05 2.9E-09 74.4 7.2 53 398-460 149-201 (372)
58 1g29_1 MALK, maltose transport 97.6 0.00044 1.5E-08 69.2 12.4 45 408-460 155-199 (372)
59 2olj_A Amino acid ABC transpor 97.6 0.00028 9.6E-09 67.2 10.3 60 408-494 175-234 (263)
60 2yz2_A Putative ABC transporte 97.6 0.0004 1.4E-08 66.3 11.4 60 408-494 154-213 (266)
61 2it1_A 362AA long hypothetical 97.6 0.00041 1.4E-08 69.2 11.6 45 408-460 149-193 (362)
62 2nq2_C Hypothetical ABC transp 97.6 0.0003 1E-08 66.7 10.2 167 288-494 21-204 (253)
63 3fvq_A Fe(3+) IONS import ATP- 97.6 0.00017 5.8E-09 71.7 8.7 33 287-319 19-52 (359)
64 1b0u_A Histidine permease; ABC 97.6 0.00028 9.7E-09 67.3 9.8 60 408-494 169-228 (262)
65 3kl4_A SRP54, signal recogniti 97.5 0.0011 3.6E-08 67.7 14.3 59 296-355 96-156 (433)
66 1vma_A Cell division protein F 97.5 0.0036 1.2E-07 60.9 17.3 43 294-337 101-143 (306)
67 2ihy_A ABC transporter, ATP-bi 97.5 0.0002 6.9E-09 68.9 7.5 32 287-318 36-68 (279)
68 3e70_C DPA, signal recognition 97.5 0.0013 4.5E-08 64.7 13.4 143 294-460 126-278 (328)
69 2yyz_A Sugar ABC transporter, 97.4 0.00015 5.2E-09 72.2 6.5 45 408-460 149-193 (359)
70 1fnn_A CDC6P, cell division co 97.4 0.0013 4.3E-08 66.3 13.5 49 299-347 46-96 (389)
71 1ji0_A ABC transporter; ATP bi 97.4 0.0002 6.8E-09 67.4 6.9 60 408-494 155-214 (240)
72 1j8m_F SRP54, signal recogniti 97.4 0.0032 1.1E-07 61.0 15.6 40 297-337 98-137 (297)
73 4gp7_A Metallophosphoesterase; 97.4 0.00012 4.1E-09 65.0 5.0 23 294-316 6-28 (171)
74 3d31_A Sulfate/molybdate ABC t 97.4 0.00054 1.8E-08 67.9 9.9 44 409-460 144-187 (348)
75 2ff7_A Alpha-hemolysin translo 97.4 0.0006 2E-08 64.4 9.9 32 288-319 25-57 (247)
76 2qi9_C Vitamin B12 import ATP- 97.4 0.00018 6.2E-09 68.0 6.1 32 287-318 15-47 (249)
77 1oxx_K GLCV, glucose, ABC tran 97.4 0.00022 7.6E-09 70.9 6.7 45 408-460 156-200 (353)
78 2pcj_A ABC transporter, lipopr 97.3 0.00047 1.6E-08 64.1 8.3 58 408-493 156-213 (224)
79 2qby_B CDC6 homolog 3, cell di 97.3 0.0006 2.1E-08 68.7 9.8 55 297-351 45-109 (384)
80 1zu4_A FTSY; GTPase, signal re 97.3 0.0017 5.7E-08 63.8 12.5 43 294-337 102-144 (320)
81 3b9q_A Chloroplast SRP recepto 97.3 0.0047 1.6E-07 60.0 15.6 43 294-337 97-139 (302)
82 1yqt_A RNAse L inhibitor; ATP- 97.3 0.0011 3.6E-08 70.1 11.4 61 408-494 417-477 (538)
83 3ozx_A RNAse L inhibitor; ATP 97.3 0.0005 1.7E-08 72.5 8.8 61 408-494 401-461 (538)
84 2qen_A Walker-type ATPase; unk 97.3 0.0023 7.9E-08 63.3 13.2 134 294-459 28-172 (350)
85 2og2_A Putative signal recogni 97.3 0.0082 2.8E-07 59.6 16.9 43 294-337 154-196 (359)
86 1rj9_A FTSY, signal recognitio 97.3 0.0066 2.2E-07 59.0 15.9 40 296-336 101-140 (304)
87 2orw_A Thymidine kinase; TMTK, 97.3 0.00032 1.1E-08 63.1 5.8 41 296-337 2-42 (184)
88 3j16_B RLI1P; ribosome recycli 97.2 0.0015 5.2E-08 69.7 11.9 158 294-494 375-543 (608)
89 2yhs_A FTSY, cell division pro 97.2 0.0093 3.2E-07 61.4 17.2 42 294-336 290-331 (503)
90 2qby_A CDC6 homolog 1, cell di 97.2 0.0012 4E-08 66.4 10.6 40 296-335 44-85 (386)
91 2ixe_A Antigen peptide transpo 97.2 0.00014 4.7E-09 69.8 3.3 33 287-319 34-67 (271)
92 2v1u_A Cell division control p 97.2 0.0023 7.9E-08 64.3 12.6 52 296-347 43-101 (387)
93 3bk7_A ABC transporter ATP-bin 97.2 0.0018 6.3E-08 69.2 12.1 158 294-494 379-547 (607)
94 2px0_A Flagellar biosynthesis 97.2 0.0029 1E-07 61.3 12.6 43 295-337 103-145 (296)
95 1ls1_A Signal recognition part 97.2 0.0046 1.6E-07 59.9 13.8 42 296-338 97-138 (295)
96 2ffh_A Protein (FFH); SRP54, s 97.1 0.0088 3E-07 60.8 15.8 141 296-459 97-246 (425)
97 1jbk_A CLPB protein; beta barr 97.1 0.0028 9.7E-08 56.4 10.9 38 297-334 43-86 (195)
98 2onk_A Molybdate/tungstate ABC 97.1 9.5E-05 3.2E-09 69.6 1.0 61 408-494 142-202 (240)
99 3nh6_A ATP-binding cassette SU 97.1 0.00083 2.8E-08 65.3 7.3 32 287-318 69-101 (306)
100 4b4t_J 26S protease regulatory 97.1 0.0039 1.3E-07 62.5 12.3 32 299-334 184-215 (405)
101 1w5s_A Origin recognition comp 97.1 0.0045 1.5E-07 62.8 12.8 52 296-347 49-109 (412)
102 4b4t_L 26S protease subunit RP 97.0 0.0062 2.1E-07 62.0 13.5 38 293-334 211-248 (437)
103 2pjz_A Hypothetical protein ST 97.0 0.0086 3E-07 56.8 13.7 33 288-321 21-54 (263)
104 4b4t_K 26S protease regulatory 97.0 0.0046 1.6E-07 62.9 12.2 113 293-459 202-319 (428)
105 1sgw_A Putative ABC transporte 97.0 0.0047 1.6E-07 56.7 11.0 32 287-318 24-56 (214)
106 3b5x_A Lipid A export ATP-bind 97.0 0.0028 9.7E-08 67.7 10.9 33 288-320 359-392 (582)
107 1c9k_A COBU, adenosylcobinamid 97.0 0.00047 1.6E-08 61.3 3.9 43 299-346 1-44 (180)
108 3h4m_A Proteasome-activating n 96.9 0.0055 1.9E-07 58.8 11.7 38 293-334 47-84 (285)
109 4b4t_I 26S protease regulatory 96.9 0.013 4.6E-07 59.0 14.3 38 293-334 212-249 (437)
110 2xxa_A Signal recognition part 96.9 0.041 1.4E-06 56.2 18.2 40 297-336 100-139 (433)
111 3pih_A Uvrabc system protein A 96.8 0.0078 2.7E-07 67.0 13.0 32 288-319 600-632 (916)
112 2z4s_A Chromosomal replication 96.8 0.0062 2.1E-07 62.6 11.3 40 297-336 130-170 (440)
113 2j37_W Signal recognition part 96.8 0.034 1.2E-06 57.7 16.6 39 297-336 101-139 (504)
114 2yvu_A Probable adenylyl-sulfa 96.8 0.0013 4.6E-08 58.9 5.3 46 288-334 4-49 (186)
115 3b60_A Lipid A export ATP-bind 96.8 0.0036 1.2E-07 66.9 9.4 26 294-319 366-391 (582)
116 2kjq_A DNAA-related protein; s 96.7 0.0016 5.3E-08 56.3 5.3 40 294-335 34-73 (149)
117 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0068 2.3E-07 63.9 10.9 26 294-319 44-69 (538)
118 3eie_A Vacuolar protein sortin 96.7 0.0062 2.1E-07 59.8 10.0 36 295-334 49-84 (322)
119 4b4t_H 26S protease regulatory 96.7 0.011 3.9E-07 60.1 11.9 39 292-334 238-276 (467)
120 3cf2_A TER ATPase, transitiona 96.7 0.011 3.9E-07 64.7 12.7 114 292-459 233-348 (806)
121 3cf0_A Transitional endoplasmi 96.7 0.008 2.7E-07 58.4 10.4 37 293-333 45-81 (301)
122 3ice_A Transcription terminati 96.7 0.0032 1.1E-07 62.5 7.4 65 279-343 156-221 (422)
123 4b4t_M 26S protease regulatory 96.6 0.014 4.7E-07 59.4 12.1 38 293-334 211-248 (434)
124 1sky_E F1-ATPase, F1-ATP synth 96.6 0.0044 1.5E-07 63.4 8.3 65 276-340 130-194 (473)
125 2ius_A DNA translocase FTSK; n 96.6 0.0035 1.2E-07 65.1 7.7 57 280-336 148-209 (512)
126 3j16_B RLI1P; ribosome recycli 96.6 0.0038 1.3E-07 66.7 7.9 26 294-319 100-125 (608)
127 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.02 7E-07 56.1 12.6 39 294-335 42-80 (322)
128 2iut_A DNA translocase FTSK; n 96.6 0.006 2.1E-07 63.9 9.1 148 294-461 211-389 (574)
129 3t15_A Ribulose bisphosphate c 96.5 0.0025 8.4E-08 61.8 5.7 34 297-334 36-69 (293)
130 3bos_A Putative DNA replicatio 96.5 0.0028 9.5E-08 59.0 5.9 39 296-335 51-89 (242)
131 3b9p_A CG5977-PA, isoform A; A 96.4 0.037 1.3E-06 53.3 13.7 35 296-334 53-87 (297)
132 4f4c_A Multidrug resistance pr 96.4 0.0034 1.2E-07 73.4 7.2 170 294-496 1102-1292(1321)
133 4f4c_A Multidrug resistance pr 96.4 0.014 4.6E-07 68.4 12.1 146 294-459 441-611 (1321)
134 3c8u_A Fructokinase; YP_612366 96.4 0.0037 1.3E-07 57.1 5.9 41 294-335 19-59 (208)
135 1g5t_A COB(I)alamin adenosyltr 96.4 0.009 3.1E-07 53.6 8.2 41 294-336 26-66 (196)
136 3qxc_A Dethiobiotin synthetase 96.4 0.082 2.8E-06 49.3 15.1 136 299-461 24-171 (242)
137 3uie_A Adenylyl-sulfate kinase 96.4 0.004 1.4E-07 56.5 5.9 40 294-334 22-61 (200)
138 3uk6_A RUVB-like 2; hexameric 96.4 0.019 6.6E-07 57.2 11.4 57 294-352 67-129 (368)
139 3bk7_A ABC transporter ATP-bin 96.4 0.019 6.4E-07 61.3 11.7 26 294-319 114-139 (607)
140 3te6_A Regulatory protein SIR3 96.4 0.037 1.3E-06 53.9 12.9 57 296-352 44-108 (318)
141 3qf4_B Uncharacterized ABC tra 96.3 0.0032 1.1E-07 67.4 5.6 31 288-318 371-402 (598)
142 2ck3_D ATP synthase subunit be 96.3 0.0064 2.2E-07 62.1 7.2 65 277-341 133-197 (482)
143 3vfd_A Spastin; ATPase, microt 96.3 0.036 1.2E-06 55.8 12.8 36 296-335 147-182 (389)
144 3d8b_A Fidgetin-like protein 1 96.2 0.028 9.5E-07 56.0 11.7 35 296-334 116-150 (357)
145 3syl_A Protein CBBX; photosynt 96.2 0.036 1.2E-06 53.7 12.3 37 296-333 66-106 (309)
146 1rz3_A Hypothetical protein rb 96.2 0.0053 1.8E-07 55.7 5.7 42 294-336 19-60 (201)
147 4aby_A DNA repair protein RECN 96.2 0.013 4.3E-07 59.7 9.1 34 284-318 47-81 (415)
148 2ce7_A Cell division protein F 96.2 0.041 1.4E-06 56.7 12.9 35 294-334 48-82 (476)
149 1zp6_A Hypothetical protein AT 96.2 0.0026 9E-08 57.0 3.5 39 293-335 5-43 (191)
150 3qf4_A ABC transporter, ATP-bi 96.2 0.019 6.5E-07 61.3 10.7 25 294-318 366-390 (587)
151 2w58_A DNAI, primosome compone 96.2 0.0036 1.2E-07 56.7 4.4 37 298-335 55-91 (202)
152 3igf_A ALL4481 protein; two-do 96.1 0.0075 2.6E-07 60.2 6.8 36 298-334 3-38 (374)
153 2pez_A Bifunctional 3'-phospho 96.1 0.0064 2.2E-07 53.9 5.7 38 295-333 3-40 (179)
154 2qp9_X Vacuolar protein sortin 96.1 0.051 1.8E-06 54.0 12.9 35 295-333 82-116 (355)
155 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.005 1.7E-07 58.4 5.3 38 296-334 3-40 (260)
156 1xjc_A MOBB protein homolog; s 96.1 0.0071 2.4E-07 53.1 5.7 38 299-337 6-43 (169)
157 2vf7_A UVRA2, excinuclease ABC 96.1 0.021 7.2E-07 63.0 10.7 23 294-316 520-542 (842)
158 3ux8_A Excinuclease ABC, A sub 96.1 0.014 4.9E-07 63.4 9.3 31 288-318 338-369 (670)
159 1fx0_B ATP synthase beta chain 96.1 0.0061 2.1E-07 62.5 5.9 66 276-341 144-209 (498)
160 3thx_A DNA mismatch repair pro 96.1 0.0093 3.2E-07 66.6 7.9 28 294-321 659-686 (934)
161 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.022 7.5E-07 53.7 9.5 38 294-335 36-73 (262)
162 1m7g_A Adenylylsulfate kinase; 96.1 0.0068 2.3E-07 55.4 5.7 40 294-333 22-61 (211)
163 1z6g_A Guanylate kinase; struc 96.0 0.0029 9.9E-08 58.4 3.1 35 287-321 12-47 (218)
164 2yl4_A ATP-binding cassette SU 96.0 0.0095 3.2E-07 63.8 7.4 26 294-319 367-392 (595)
165 3zq6_A Putative arsenical pump 96.0 0.0088 3E-07 58.8 6.5 39 298-337 15-53 (324)
166 2eyu_A Twitching motility prot 96.0 0.011 3.7E-07 56.1 6.7 45 287-332 16-60 (261)
167 2va8_A SSO2462, SKI2-type heli 96.0 0.061 2.1E-06 58.9 13.7 137 294-459 43-183 (715)
168 3l0o_A Transcription terminati 96.0 0.012 4.2E-07 58.3 7.2 63 279-341 157-220 (427)
169 1l8q_A Chromosomal replication 95.9 0.0055 1.9E-07 60.2 4.6 39 297-336 37-75 (324)
170 2qgz_A Helicase loader, putati 95.9 0.0079 2.7E-07 58.6 5.7 38 297-335 152-190 (308)
171 3thx_B DNA mismatch repair pro 95.9 0.0015 5E-08 72.9 0.5 28 294-321 670-697 (918)
172 2woj_A ATPase GET3; tail-ancho 95.9 0.0076 2.6E-07 60.0 5.6 49 288-337 9-59 (354)
173 1kgd_A CASK, peripheral plasma 95.9 0.0045 1.5E-07 55.1 3.6 26 295-320 3-28 (180)
174 2iw3_A Elongation factor 3A; a 95.9 0.045 1.5E-06 61.1 12.2 25 294-318 458-482 (986)
175 3vaa_A Shikimate kinase, SK; s 95.9 0.0054 1.9E-07 55.5 4.1 28 294-321 22-49 (199)
176 1yrb_A ATP(GTP)binding protein 95.9 0.008 2.7E-07 56.8 5.5 41 294-336 11-51 (262)
177 3end_A Light-independent proto 95.8 0.0089 3E-07 58.2 5.7 42 295-337 39-80 (307)
178 2j41_A Guanylate kinase; GMP, 95.8 0.0053 1.8E-07 55.7 3.7 27 294-320 3-29 (207)
179 3tr0_A Guanylate kinase, GMP k 95.8 0.0054 1.8E-07 55.6 3.7 27 294-320 4-30 (205)
180 2pl3_A Probable ATP-dependent 95.8 0.18 6.1E-06 46.5 14.3 42 294-335 59-106 (236)
181 2obl_A ESCN; ATPase, hydrolase 95.8 0.0068 2.3E-07 60.0 4.6 42 279-320 53-94 (347)
182 2qm8_A GTPase/ATPase; G protei 95.8 0.012 4E-07 58.1 6.3 48 288-336 45-93 (337)
183 3ux8_A Excinuclease ABC, A sub 95.7 0.013 4.4E-07 63.7 7.1 28 287-314 33-61 (670)
184 2v3c_C SRP54, signal recogniti 95.7 0.0066 2.3E-07 62.0 4.4 38 298-336 100-137 (432)
185 1znw_A Guanylate kinase, GMP k 95.7 0.0059 2E-07 55.7 3.6 27 294-320 17-43 (207)
186 1z6t_A APAF-1, apoptotic prote 95.7 0.031 1.1E-06 59.6 9.8 49 297-345 147-199 (591)
187 1nks_A Adenylate kinase; therm 95.7 0.0092 3.1E-07 53.3 4.8 34 299-333 3-36 (194)
188 3tau_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 55.5 3.7 26 295-320 6-31 (208)
189 2dpy_A FLII, flagellum-specifi 95.6 0.0095 3.3E-07 61.0 5.2 42 279-320 139-180 (438)
190 3aez_A Pantothenate kinase; tr 95.6 0.01 3.6E-07 57.8 5.3 42 294-335 87-129 (312)
191 4eun_A Thermoresistant glucoki 95.6 0.0078 2.7E-07 54.5 4.1 28 294-321 26-53 (200)
192 1htw_A HI0065; nucleotide-bind 95.6 0.0073 2.5E-07 52.6 3.7 28 294-321 30-57 (158)
193 3ug7_A Arsenical pump-driving 95.6 0.012 4E-07 58.5 5.6 41 296-337 25-65 (349)
194 3io3_A DEHA2D07832P; chaperone 95.6 0.012 4.1E-07 58.3 5.7 50 287-336 8-58 (348)
195 2v9p_A Replication protein E1; 95.6 0.0071 2.4E-07 58.6 3.9 35 287-321 115-150 (305)
196 1s96_A Guanylate kinase, GMP k 95.6 0.0069 2.4E-07 55.9 3.6 27 294-320 13-39 (219)
197 3iqw_A Tail-anchored protein t 95.6 0.01 3.4E-07 58.5 5.0 39 298-337 17-55 (334)
198 1np6_A Molybdopterin-guanine d 95.6 0.014 4.8E-07 51.6 5.4 38 298-336 7-44 (174)
199 3bfv_A CAPA1, CAPB2, membrane 95.6 0.017 5.7E-07 55.2 6.3 40 298-338 83-123 (271)
200 1ihu_A Arsenical pump-driving 95.6 0.014 4.7E-07 62.5 6.3 41 296-337 7-47 (589)
201 4b3f_X DNA-binding protein smu 95.6 0.012 4E-07 63.7 5.9 53 294-347 202-255 (646)
202 2o8b_B DNA mismatch repair pro 95.5 0.0084 2.9E-07 67.9 4.6 45 408-459 866-910 (1022)
203 4dzz_A Plasmid partitioning pr 95.5 0.012 4.1E-07 53.3 4.8 38 299-337 4-41 (206)
204 1kht_A Adenylate kinase; phosp 95.5 0.011 3.8E-07 52.7 4.5 36 297-333 3-38 (192)
205 1tue_A Replication protein E1; 95.5 0.0076 2.6E-07 54.4 3.3 28 294-321 55-82 (212)
206 2qor_A Guanylate kinase; phosp 95.5 0.008 2.7E-07 54.7 3.6 28 294-321 9-36 (204)
207 3cio_A ETK, tyrosine-protein k 95.5 0.017 5.7E-07 56.0 6.0 40 297-337 104-144 (299)
208 2ck3_A ATP synthase subunit al 95.4 0.027 9.3E-07 57.9 7.6 67 276-342 141-214 (510)
209 3p32_A Probable GTPase RV1496/ 95.4 0.016 5.5E-07 57.6 5.8 42 297-339 79-120 (355)
210 1knq_A Gluconate kinase; ALFA/ 95.4 0.011 3.8E-07 52.1 4.1 26 295-320 6-31 (175)
211 1g3q_A MIND ATPase, cell divis 95.4 0.017 5.7E-07 53.7 5.5 38 299-337 5-42 (237)
212 1hyq_A MIND, cell division inh 95.4 0.018 6.2E-07 54.4 5.8 38 299-337 5-42 (263)
213 2woo_A ATPase GET3; tail-ancho 95.4 0.015 5.1E-07 57.3 5.3 39 298-337 20-58 (329)
214 2p65_A Hypothetical protein PF 95.4 0.012 4E-07 52.1 4.2 37 297-333 43-85 (187)
215 1qhx_A CPT, protein (chloramph 95.3 0.011 3.9E-07 52.1 4.0 34 297-334 3-36 (178)
216 2jeo_A Uridine-cytidine kinase 95.3 0.01 3.4E-07 55.7 3.7 35 287-321 14-49 (245)
217 3fwy_A Light-independent proto 95.3 0.017 5.9E-07 56.3 5.4 42 294-336 45-86 (314)
218 1nn5_A Similar to deoxythymidy 95.3 0.02 6.9E-07 52.1 5.6 38 295-333 7-44 (215)
219 2ph1_A Nucleotide-binding prot 95.2 0.019 6.6E-07 54.4 5.5 39 299-338 21-59 (262)
220 3q9l_A Septum site-determining 95.2 0.019 6.6E-07 54.0 5.5 37 299-336 5-41 (260)
221 2rhm_A Putative kinase; P-loop 95.2 0.013 4.5E-07 52.3 4.1 26 295-320 3-28 (193)
222 2jlq_A Serine protease subunit 95.2 0.13 4.5E-06 52.8 12.2 56 294-353 16-72 (451)
223 3g5u_A MCG1178, multidrug resi 95.2 0.019 6.4E-07 67.0 6.3 31 288-318 1049-1080(1284)
224 2p67_A LAO/AO transport system 95.2 0.025 8.7E-07 55.9 6.4 45 294-339 53-97 (341)
225 2cbz_A Multidrug resistance-as 95.2 0.0096 3.3E-07 55.6 3.2 32 287-318 20-52 (237)
226 1lvg_A Guanylate kinase, GMP k 95.2 0.0087 3E-07 54.2 2.8 27 295-321 2-28 (198)
227 3jvv_A Twitching mobility prot 95.2 0.023 8E-07 56.4 6.1 42 294-337 120-161 (356)
228 1ypw_A Transitional endoplasmi 95.2 0.083 2.8E-06 58.5 11.1 37 293-333 234-270 (806)
229 3hu3_A Transitional endoplasmi 95.2 0.17 5.9E-06 52.4 12.8 38 293-334 234-271 (489)
230 3ney_A 55 kDa erythrocyte memb 95.1 0.014 4.8E-07 52.7 3.9 27 294-320 16-42 (197)
231 2afh_E Nitrogenase iron protei 95.1 0.02 7E-07 55.0 5.4 38 299-337 4-41 (289)
232 3oiy_A Reverse gyrase helicase 95.1 0.06 2E-06 54.6 9.1 115 294-422 33-151 (414)
233 3lnc_A Guanylate kinase, GMP k 95.1 0.0077 2.6E-07 55.9 2.3 25 294-318 24-48 (231)
234 2axn_A 6-phosphofructo-2-kinas 95.1 0.14 5E-06 53.4 12.1 39 297-336 35-73 (520)
235 1wb9_A DNA mismatch repair pro 95.1 0.044 1.5E-06 60.3 8.5 27 295-321 605-631 (800)
236 1cp2_A CP2, nitrogenase iron p 95.1 0.018 6.2E-07 54.6 4.8 38 299-337 3-40 (269)
237 1sxj_E Activator 1 40 kDa subu 95.1 0.047 1.6E-06 54.0 8.1 23 300-322 39-61 (354)
238 3fkq_A NTRC-like two-domain pr 95.1 0.021 7.2E-07 57.2 5.5 36 299-335 146-181 (373)
239 3kjh_A CO dehydrogenase/acetyl 95.1 0.01 3.5E-07 55.6 3.0 36 301-337 4-39 (254)
240 3la6_A Tyrosine-protein kinase 95.1 0.022 7.6E-07 54.8 5.4 39 299-338 95-133 (286)
241 3lw7_A Adenylate kinase relate 95.1 0.017 5.9E-07 50.5 4.3 27 299-330 3-29 (179)
242 2a5y_B CED-4; apoptosis; HET: 95.1 0.15 5E-06 53.9 12.3 52 298-349 153-211 (549)
243 2r2a_A Uncharacterized protein 95.1 0.012 4.1E-07 53.3 3.3 38 298-335 6-48 (199)
244 3cm0_A Adenylate kinase; ATP-b 95.0 0.014 4.7E-07 52.0 3.6 25 296-320 3-27 (186)
245 2qt1_A Nicotinamide riboside k 95.0 0.013 4.6E-07 53.2 3.6 37 294-335 18-54 (207)
246 1mv5_A LMRA, multidrug resista 95.0 0.011 3.9E-07 55.4 3.0 32 288-319 18-50 (243)
247 2bdt_A BH3686; alpha-beta prot 95.0 0.012 4E-07 52.7 3.0 23 297-319 2-24 (189)
248 3ea0_A ATPase, para family; al 95.0 0.021 7.1E-07 53.3 4.9 39 299-337 7-45 (245)
249 3kb2_A SPBC2 prophage-derived 95.0 0.016 5.4E-07 50.7 3.8 22 299-320 3-24 (173)
250 2ewv_A Twitching motility prot 95.0 0.029 9.8E-07 56.2 6.1 39 294-332 133-171 (372)
251 2z0h_A DTMP kinase, thymidylat 95.0 0.025 8.7E-07 50.6 5.2 34 299-333 2-35 (197)
252 3b85_A Phosphate starvation-in 95.0 0.0086 2.9E-07 54.7 2.0 27 294-320 19-45 (208)
253 2pze_A Cystic fibrosis transme 94.9 0.011 3.9E-07 54.8 2.8 32 287-318 23-55 (229)
254 2zu0_C Probable ATP-dependent 94.9 0.011 3.8E-07 56.3 2.8 33 287-319 35-68 (267)
255 2wwf_A Thymidilate kinase, put 94.9 0.028 9.6E-07 51.0 5.5 39 294-333 7-45 (212)
256 2pbr_A DTMP kinase, thymidylat 94.9 0.027 9.3E-07 50.3 5.3 34 299-333 2-35 (195)
257 1sq5_A Pantothenate kinase; P- 94.9 0.019 6.6E-07 55.8 4.6 41 295-335 78-119 (308)
258 3asz_A Uridine kinase; cytidin 94.9 0.014 4.8E-07 53.2 3.4 37 295-335 4-40 (211)
259 2d2e_A SUFC protein; ABC-ATPas 94.9 0.01 3.6E-07 55.9 2.5 32 288-319 19-51 (250)
260 2v6i_A RNA helicase; membrane, 94.9 0.13 4.3E-06 52.6 10.9 54 296-353 1-55 (431)
261 2zj8_A DNA helicase, putative 94.9 0.11 3.6E-06 57.0 11.0 139 294-459 36-177 (720)
262 2r9v_A ATP synthase subunit al 94.9 0.022 7.7E-07 58.4 5.1 66 276-342 154-219 (515)
263 1ly1_A Polynucleotide kinase; 94.9 0.014 4.9E-07 51.4 3.3 32 298-334 3-34 (181)
264 1kag_A SKI, shikimate kinase I 94.9 0.013 4.3E-07 51.5 2.9 25 296-320 3-27 (173)
265 3cwq_A Para family chromosome 94.9 0.024 8.1E-07 51.7 4.8 37 299-337 3-39 (209)
266 2qe7_A ATP synthase subunit al 94.8 0.024 8.2E-07 58.2 5.1 66 276-342 141-206 (502)
267 2ghi_A Transport protein; mult 94.8 0.014 4.7E-07 55.4 3.2 32 288-319 36-68 (260)
268 3cf2_A TER ATPase, transitiona 94.8 0.036 1.2E-06 60.8 6.7 36 293-332 507-542 (806)
269 1gvn_B Zeta; postsegregational 94.8 0.018 6E-07 55.5 3.9 37 294-334 30-66 (287)
270 2ze6_A Isopentenyl transferase 94.8 0.018 6.1E-07 54.3 3.8 23 298-320 2-24 (253)
271 3oaa_A ATP synthase subunit al 94.7 0.029 9.9E-07 57.4 5.3 66 276-342 141-206 (513)
272 2plr_A DTMP kinase, probable t 94.7 0.021 7.2E-07 51.8 4.0 35 296-332 3-37 (213)
273 1byi_A Dethiobiotin synthase; 94.7 0.033 1.1E-06 51.2 5.3 34 299-333 4-37 (224)
274 3ld9_A DTMP kinase, thymidylat 94.7 0.039 1.3E-06 50.8 5.7 42 294-336 18-60 (223)
275 1fx0_A ATP synthase alpha chai 94.7 0.025 8.5E-07 58.1 4.7 66 276-342 142-207 (507)
276 3kta_A Chromosome segregation 94.6 0.022 7.4E-07 50.5 3.8 36 284-320 11-49 (182)
277 2www_A Methylmalonic aciduria 94.6 0.041 1.4E-06 54.6 6.1 43 296-339 73-115 (349)
278 3trf_A Shikimate kinase, SK; a 94.6 0.024 8.4E-07 50.3 4.0 24 297-320 5-28 (185)
279 1odf_A YGR205W, hypothetical 3 94.6 0.026 8.7E-07 54.4 4.3 41 294-335 28-71 (290)
280 3k9g_A PF-32 protein; ssgcid, 94.5 0.022 7.4E-07 54.1 3.8 38 299-338 30-67 (267)
281 1ihu_A Arsenical pump-driving 94.5 0.038 1.3E-06 59.0 6.1 52 285-337 312-366 (589)
282 1tev_A UMP-CMP kinase; ploop, 94.5 0.024 8.3E-07 50.6 3.9 24 297-320 3-26 (196)
283 1a7j_A Phosphoribulokinase; tr 94.5 0.03 1E-06 53.9 4.7 39 297-336 5-43 (290)
284 3iij_A Coilin-interacting nucl 94.5 0.025 8.5E-07 50.0 3.8 27 294-320 8-34 (180)
285 3llm_A ATP-dependent RNA helic 94.4 0.069 2.4E-06 49.5 7.0 57 289-345 67-129 (235)
286 1y63_A LMAJ004144AAA protein; 94.4 0.029 9.8E-07 50.0 4.2 27 294-320 7-33 (184)
287 3a00_A Guanylate kinase, GMP k 94.4 0.018 6.3E-07 51.3 2.9 25 297-321 1-25 (186)
288 2p6r_A Afuhel308 helicase; pro 94.4 0.088 3E-06 57.4 8.8 140 294-459 37-180 (702)
289 2oze_A ORF delta'; para, walke 94.4 0.032 1.1E-06 53.8 4.8 40 298-338 35-77 (298)
290 1wcv_1 SOJ, segregation protei 94.4 0.023 7.7E-07 53.7 3.6 39 298-337 7-46 (257)
291 1p9r_A General secretion pathw 94.4 0.026 8.9E-07 57.3 4.1 38 294-332 164-201 (418)
292 2c95_A Adenylate kinase 1; tra 94.4 0.029 1E-06 50.2 4.1 26 295-320 7-32 (196)
293 1qvr_A CLPB protein; coiled co 94.3 0.093 3.2E-06 58.6 8.9 36 299-334 193-234 (854)
294 2v54_A DTMP kinase, thymidylat 94.3 0.024 8.2E-07 51.2 3.4 35 296-333 3-37 (204)
295 3lv8_A DTMP kinase, thymidylat 94.3 0.054 1.8E-06 50.4 5.9 43 294-337 24-66 (236)
296 2qmh_A HPR kinase/phosphorylas 94.3 0.025 8.4E-07 50.8 3.3 26 295-320 32-57 (205)
297 2xj4_A MIPZ; replication, cell 94.3 0.036 1.2E-06 53.3 4.8 37 299-336 7-43 (286)
298 1svm_A Large T antigen; AAA+ f 94.3 0.026 9E-07 56.4 4.0 28 293-320 165-192 (377)
299 4edh_A DTMP kinase, thymidylat 94.2 0.045 1.5E-06 50.1 5.0 37 296-333 5-41 (213)
300 3t61_A Gluconokinase; PSI-biol 94.2 0.029 1E-06 50.7 3.7 25 297-321 18-42 (202)
301 4eaq_A DTMP kinase, thymidylat 94.2 0.042 1.4E-06 50.9 4.8 36 294-331 23-58 (229)
302 3gd7_A Fusion complex of cysti 94.1 0.021 7.1E-07 57.4 2.8 33 287-319 36-69 (390)
303 1aky_A Adenylate kinase; ATP:A 94.1 0.035 1.2E-06 50.9 4.1 25 296-320 3-27 (220)
304 3b6e_A Interferon-induced heli 94.1 0.26 9E-06 44.4 10.1 40 296-335 47-91 (216)
305 2vli_A Antibiotic resistance p 94.1 0.026 8.9E-07 49.9 3.1 31 296-330 4-34 (183)
306 2bbs_A Cystic fibrosis transme 94.1 0.023 8E-07 54.6 3.0 31 288-318 54-85 (290)
307 2bbw_A Adenylate kinase 4, AK4 94.1 0.035 1.2E-06 51.9 4.1 26 295-320 25-50 (246)
308 3tqc_A Pantothenate kinase; bi 94.0 0.039 1.3E-06 53.8 4.4 38 299-336 94-132 (321)
309 1ixz_A ATP-dependent metallopr 94.0 0.046 1.6E-06 51.3 4.8 34 294-333 48-81 (254)
310 4fcw_A Chaperone protein CLPB; 94.0 0.038 1.3E-06 53.5 4.3 38 297-335 47-84 (311)
311 3g5u_A MCG1178, multidrug resi 94.0 0.037 1.3E-06 64.6 4.8 31 288-318 406-437 (1284)
312 2x8a_A Nuclear valosin-contain 94.0 0.064 2.2E-06 51.1 5.8 35 294-334 43-77 (274)
313 1gtv_A TMK, thymidylate kinase 93.9 0.016 5.4E-07 52.8 1.3 34 299-333 2-35 (214)
314 2yv5_A YJEQ protein; hydrolase 93.9 0.033 1.1E-06 54.0 3.7 32 287-318 155-186 (302)
315 3pg5_A Uncharacterized protein 93.9 0.027 9.4E-07 56.1 3.2 38 299-337 4-41 (361)
316 3upu_A ATP-dependent DNA helic 93.9 0.066 2.3E-06 55.2 6.1 40 299-339 47-87 (459)
317 2c61_A A-type ATP synthase non 93.9 0.036 1.2E-06 56.5 3.9 65 277-341 132-199 (469)
318 2cdn_A Adenylate kinase; phosp 93.8 0.044 1.5E-06 49.4 4.2 29 297-329 20-48 (201)
319 3n70_A Transport activator; si 93.8 0.021 7.1E-07 48.7 1.9 37 296-334 23-59 (145)
320 2p5t_B PEZT; postsegregational 93.8 0.029 1E-06 52.8 3.0 38 294-335 29-66 (253)
321 4ag6_A VIRB4 ATPase, type IV s 93.8 0.059 2E-06 54.3 5.5 48 296-344 34-81 (392)
322 3a8t_A Adenylate isopentenyltr 93.8 0.036 1.2E-06 54.2 3.7 36 294-335 37-72 (339)
323 2bwj_A Adenylate kinase 5; pho 93.8 0.041 1.4E-06 49.3 3.8 27 294-320 9-35 (199)
324 3vr4_A V-type sodium ATPase ca 93.8 0.12 4.2E-06 53.7 7.7 65 276-343 211-275 (600)
325 3e1s_A Exodeoxyribonuclease V, 93.8 0.063 2.2E-06 56.9 5.8 43 294-337 201-243 (574)
326 3nwj_A ATSK2; P loop, shikimat 93.7 0.028 9.7E-07 52.8 2.6 34 287-320 34-71 (250)
327 2gza_A Type IV secretion syste 93.7 0.025 8.5E-07 56.4 2.3 28 294-321 172-199 (361)
328 4e22_A Cytidylate kinase; P-lo 93.6 0.041 1.4E-06 51.7 3.7 27 294-320 24-50 (252)
329 2i3b_A HCR-ntpase, human cance 93.6 0.047 1.6E-06 48.9 3.8 29 297-326 1-29 (189)
330 3umf_A Adenylate kinase; rossm 93.6 0.052 1.8E-06 49.7 4.2 27 294-320 26-52 (217)
331 2bjv_A PSP operon transcriptio 93.6 0.043 1.5E-06 51.9 3.8 40 297-337 29-68 (265)
332 1via_A Shikimate kinase; struc 93.6 0.043 1.5E-06 48.2 3.5 22 299-320 6-27 (175)
333 2iyv_A Shikimate kinase, SK; t 93.6 0.039 1.3E-06 48.9 3.2 28 298-329 3-30 (184)
334 1t9h_A YLOQ, probable GTPase E 93.5 0.014 4.8E-07 56.6 0.3 32 288-319 164-195 (307)
335 2jaq_A Deoxyguanosine kinase; 93.5 0.047 1.6E-06 49.1 3.8 23 299-321 2-24 (205)
336 2qag_B Septin-6, protein NEDD5 93.5 0.039 1.3E-06 55.8 3.5 32 288-319 30-64 (427)
337 1uj2_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 51.3 3.9 38 298-335 23-64 (252)
338 1njg_A DNA polymerase III subu 93.5 0.036 1.2E-06 51.0 3.0 26 298-323 46-71 (250)
339 3i5x_A ATP-dependent RNA helic 93.5 1.3 4.4E-05 46.6 15.5 144 296-459 110-272 (563)
340 3vr4_D V-type sodium ATPase su 93.5 0.044 1.5E-06 55.6 3.7 65 276-341 130-198 (465)
341 4f92_B U5 small nuclear ribonu 93.5 0.33 1.1E-05 58.1 11.8 143 294-459 939-1091(1724)
342 3ly5_A ATP-dependent RNA helic 93.4 0.37 1.3E-05 45.3 10.0 52 295-346 89-147 (262)
343 1qf9_A UMP/CMP kinase, protein 93.3 0.051 1.7E-06 48.3 3.6 23 298-320 7-29 (194)
344 3gqb_A V-type ATP synthase alp 93.3 0.12 4.1E-06 53.5 6.7 65 276-343 200-264 (578)
345 4tmk_A Protein (thymidylate ki 93.3 0.11 3.9E-06 47.3 6.0 38 296-335 2-40 (213)
346 1e6c_A Shikimate kinase; phosp 93.3 0.047 1.6E-06 47.7 3.2 22 299-320 4-25 (173)
347 2npi_A Protein CLP1; CLP1-PCF1 93.2 0.049 1.7E-06 56.0 3.8 37 294-330 135-172 (460)
348 2chg_A Replication factor C sm 93.2 0.034 1.2E-06 50.5 2.4 24 300-323 41-64 (226)
349 3gqb_B V-type ATP synthase bet 93.2 0.047 1.6E-06 55.4 3.5 66 276-341 126-201 (464)
350 1lv7_A FTSH; alpha/beta domain 93.2 0.083 2.8E-06 49.6 5.0 31 300-334 48-78 (257)
351 3fb4_A Adenylate kinase; psych 93.2 0.058 2E-06 49.2 3.8 22 299-320 2-23 (216)
352 3cr8_A Sulfate adenylyltranfer 93.1 0.045 1.5E-06 57.6 3.3 41 294-334 366-406 (552)
353 3v9p_A DTMP kinase, thymidylat 93.1 0.092 3.2E-06 48.4 5.0 40 294-333 22-64 (227)
354 1sxj_C Activator 1 40 kDa subu 93.1 0.044 1.5E-06 54.0 3.0 29 294-322 41-71 (340)
355 2xzl_A ATP-dependent helicase 93.1 0.11 3.9E-06 57.2 6.6 52 296-347 374-426 (802)
356 1zd8_A GTP:AMP phosphotransfer 93.1 0.057 1.9E-06 49.8 3.6 26 295-320 5-30 (227)
357 2fna_A Conserved hypothetical 93.1 0.16 5.5E-06 49.8 7.2 34 298-335 31-64 (357)
358 4ddu_A Reverse gyrase; topoiso 93.1 0.33 1.1E-05 55.5 10.6 116 294-423 90-209 (1104)
359 2f1r_A Molybdopterin-guanine d 93.1 0.06 2E-06 47.3 3.5 37 298-335 3-39 (171)
360 3tlx_A Adenylate kinase 2; str 93.0 0.069 2.4E-06 49.9 4.2 26 295-320 27-52 (243)
361 1ex7_A Guanylate kinase; subst 93.0 0.051 1.8E-06 48.5 3.1 22 299-320 3-24 (186)
362 1zuh_A Shikimate kinase; alpha 93.0 0.068 2.3E-06 46.5 3.9 29 298-330 8-36 (168)
363 1zak_A Adenylate kinase; ATP:A 93.0 0.058 2E-06 49.5 3.5 24 297-320 5-28 (222)
364 3d3q_A TRNA delta(2)-isopenten 93.0 0.052 1.8E-06 53.2 3.3 32 298-335 8-39 (340)
365 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.024 8.2E-07 55.7 0.9 28 294-321 168-195 (330)
366 1cke_A CK, MSSA, protein (cyti 92.9 0.069 2.4E-06 49.0 4.0 24 297-320 5-28 (227)
367 1u0l_A Probable GTPase ENGC; p 92.9 0.043 1.5E-06 53.2 2.6 32 287-318 159-190 (301)
368 2rcn_A Probable GTPase ENGC; Y 92.9 0.052 1.8E-06 53.7 3.2 31 288-318 206-236 (358)
369 2pt5_A Shikimate kinase, SK; a 92.9 0.072 2.4E-06 46.3 3.8 28 299-330 2-29 (168)
370 1ukz_A Uridylate kinase; trans 92.8 0.074 2.5E-06 47.9 4.0 23 298-320 16-38 (203)
371 3sqw_A ATP-dependent RNA helic 92.8 0.93 3.2E-05 48.0 13.2 144 296-459 59-221 (579)
372 1ye8_A Protein THEP1, hypothet 92.8 0.061 2.1E-06 47.6 3.3 23 299-321 2-24 (178)
373 3exa_A TRNA delta(2)-isopenten 92.8 0.063 2.2E-06 51.8 3.5 33 297-335 3-35 (322)
374 2gk6_A Regulator of nonsense t 92.8 0.09 3.1E-06 56.5 5.2 50 297-346 195-245 (624)
375 3be4_A Adenylate kinase; malar 92.8 0.068 2.3E-06 48.9 3.6 30 297-330 5-34 (217)
376 3r20_A Cytidylate kinase; stru 92.7 0.073 2.5E-06 49.3 3.8 23 298-320 10-32 (233)
377 3sr0_A Adenylate kinase; phosp 92.7 0.077 2.6E-06 48.2 3.8 22 299-320 2-23 (206)
378 3ez2_A Plasmid partition prote 92.6 0.09 3.1E-06 53.0 4.7 40 299-338 111-155 (398)
379 3foz_A TRNA delta(2)-isopenten 92.6 0.07 2.4E-06 51.4 3.6 33 297-335 10-42 (316)
380 3dl0_A Adenylate kinase; phosp 92.6 0.067 2.3E-06 48.7 3.4 22 299-320 2-23 (216)
381 1ofh_A ATP-dependent HSL prote 92.6 0.1 3.6E-06 50.2 5.0 34 298-335 51-84 (310)
382 1d2n_A N-ethylmaleimide-sensit 92.6 0.099 3.4E-06 49.6 4.6 33 297-333 64-96 (272)
383 3mfy_A V-type ATP synthase alp 92.5 0.11 3.7E-06 53.8 5.0 63 277-342 207-269 (588)
384 3u61_B DNA polymerase accessor 92.5 0.15 5E-06 49.7 5.8 36 298-337 49-84 (324)
385 1ak2_A Adenylate kinase isoenz 92.4 0.096 3.3E-06 48.5 4.2 25 296-320 15-39 (233)
386 2xb4_A Adenylate kinase; ATP-b 92.4 0.083 2.8E-06 48.5 3.8 23 299-321 2-24 (223)
387 1jjv_A Dephospho-COA kinase; P 92.4 0.072 2.5E-06 48.1 3.3 21 299-319 4-24 (206)
388 1f2t_A RAD50 ABC-ATPase; DNA d 92.4 0.087 3E-06 45.1 3.6 25 294-319 21-45 (149)
389 3crm_A TRNA delta(2)-isopenten 92.4 0.077 2.6E-06 51.6 3.6 32 298-335 6-37 (323)
390 2gxq_A Heat resistant RNA depe 92.4 0.46 1.6E-05 42.5 8.7 54 294-347 35-94 (207)
391 2oap_1 GSPE-2, type II secreti 92.3 0.047 1.6E-06 57.0 2.0 28 294-321 257-284 (511)
392 2vp4_A Deoxynucleoside kinase; 92.3 0.052 1.8E-06 50.2 2.2 35 294-333 17-51 (230)
393 2if2_A Dephospho-COA kinase; a 92.3 0.073 2.5E-06 48.0 3.1 29 299-332 3-31 (204)
394 1iy2_A ATP-dependent metallopr 92.2 0.092 3.1E-06 50.0 3.9 34 294-333 72-105 (278)
395 2z83_A Helicase/nucleoside tri 92.2 0.18 6.3E-06 51.8 6.4 56 294-353 18-74 (459)
396 1t6n_A Probable ATP-dependent 92.2 1.5 5.1E-05 39.6 12.0 39 297-335 51-91 (220)
397 1pui_A ENGB, probable GTP-bind 92.2 0.047 1.6E-06 49.3 1.7 31 287-318 17-47 (210)
398 2zan_A Vacuolar protein sortin 92.1 0.18 6.2E-06 51.6 6.2 39 294-335 164-202 (444)
399 1x6v_B Bifunctional 3'-phospho 92.1 0.11 3.9E-06 55.1 4.7 37 296-333 51-87 (630)
400 2grj_A Dephospho-COA kinase; T 92.0 0.1 3.4E-06 46.9 3.7 30 297-330 12-41 (192)
401 3eph_A TRNA isopentenyltransfe 92.0 0.096 3.3E-06 52.4 3.8 24 298-321 3-26 (409)
402 4a8j_A Elongator complex prote 92.0 0.1 3.6E-06 51.1 4.0 90 394-495 199-292 (361)
403 2wsm_A Hydrogenase expression/ 91.9 0.13 4.5E-06 46.8 4.5 37 299-337 32-68 (221)
404 1m8p_A Sulfate adenylyltransfe 91.9 0.14 4.9E-06 54.1 5.3 40 295-335 394-434 (573)
405 1e4v_A Adenylate kinase; trans 91.8 0.096 3.3E-06 47.7 3.4 21 300-320 3-23 (214)
406 1ltq_A Polynucleotide kinase; 91.8 0.089 3E-06 50.7 3.3 22 298-319 3-24 (301)
407 1q3t_A Cytidylate kinase; nucl 91.7 0.13 4.5E-06 47.6 4.3 27 294-320 13-39 (236)
408 1sxj_A Activator 1 95 kDa subu 91.7 0.15 5.2E-06 53.3 5.2 37 296-336 76-112 (516)
409 2gks_A Bifunctional SAT/APS ki 91.7 0.14 4.7E-06 53.9 4.8 49 286-335 355-409 (546)
410 1ojl_A Transcriptional regulat 91.7 0.085 2.9E-06 51.1 3.0 47 295-342 23-69 (304)
411 1nij_A Hypothetical protein YJ 91.7 0.1 3.5E-06 50.9 3.6 23 298-320 5-27 (318)
412 3zvl_A Bifunctional polynucleo 91.6 0.088 3E-06 53.5 3.2 24 296-319 257-280 (416)
413 1uf9_A TT1252 protein; P-loop, 91.6 0.094 3.2E-06 47.0 3.1 22 298-319 9-30 (203)
414 3tqf_A HPR(Ser) kinase; transf 91.6 0.11 3.9E-06 45.3 3.3 24 296-319 15-38 (181)
415 3ake_A Cytidylate kinase; CMP 91.5 0.13 4.3E-06 46.4 3.8 22 299-320 4-25 (208)
416 2wjy_A Regulator of nonsense t 91.4 0.17 5.7E-06 55.8 5.3 51 296-346 370-421 (800)
417 2v1x_A ATP-dependent DNA helic 91.4 0.77 2.6E-05 48.8 10.4 112 294-423 56-178 (591)
418 1vht_A Dephospho-COA kinase; s 91.4 0.12 4E-06 47.2 3.5 29 297-330 4-32 (218)
419 3iuy_A Probable ATP-dependent 91.4 0.48 1.7E-05 43.2 7.8 40 296-335 56-103 (228)
420 1in4_A RUVB, holliday junction 91.4 0.12 4E-06 50.8 3.7 24 298-321 52-75 (334)
421 3m6a_A ATP-dependent protease 91.2 0.13 4.5E-06 54.1 4.1 26 296-321 107-132 (543)
422 1vec_A ATP-dependent RNA helic 91.2 1.1 3.9E-05 39.9 9.9 42 294-335 37-80 (206)
423 1um8_A ATP-dependent CLP prote 91.2 0.16 5.4E-06 50.7 4.5 34 297-334 72-105 (376)
424 3hws_A ATP-dependent CLP prote 91.0 0.15 5.2E-06 50.6 4.1 34 297-334 51-84 (363)
425 2dhr_A FTSH; AAA+ protein, hex 91.0 0.21 7E-06 51.9 5.2 36 294-335 63-98 (499)
426 1tq4_A IIGP1, interferon-induc 90.9 0.089 3E-06 53.2 2.3 22 298-319 70-91 (413)
427 2gj8_A MNME, tRNA modification 90.8 0.14 4.6E-06 44.8 3.2 23 296-318 3-25 (172)
428 3ez9_A Para; DNA binding, wing 90.8 0.096 3.3E-06 52.9 2.5 39 299-337 114-157 (403)
429 1hqc_A RUVB; extended AAA-ATPa 90.8 0.16 5.5E-06 49.3 4.0 34 298-335 39-72 (324)
430 3pfi_A Holliday junction ATP-d 90.8 0.2 6.8E-06 49.1 4.7 32 299-334 57-88 (338)
431 3euj_A Chromosome partition pr 90.8 0.11 3.7E-06 53.6 2.8 36 284-320 16-52 (483)
432 1gm5_A RECG; helicase, replica 90.8 0.54 1.9E-05 51.6 8.6 106 299-421 391-501 (780)
433 3qks_A DNA double-strand break 90.8 0.16 5.3E-06 46.0 3.6 27 294-321 21-47 (203)
434 1e9r_A Conjugal transfer prote 90.7 0.23 7.8E-06 50.7 5.3 38 298-336 54-91 (437)
435 1sxj_D Activator 1 41 kDa subu 90.7 0.28 9.6E-06 48.1 5.7 36 300-335 61-98 (353)
436 1gku_B Reverse gyrase, TOP-RG; 90.7 0.28 9.5E-06 56.0 6.3 114 294-423 68-188 (1054)
437 2f6r_A COA synthase, bifunctio 90.6 0.13 4.4E-06 49.2 3.1 28 298-330 76-103 (281)
438 1hv8_A Putative ATP-dependent 90.5 0.39 1.3E-05 47.2 6.7 48 298-345 45-94 (367)
439 3of5_A Dethiobiotin synthetase 90.5 0.29 9.8E-06 45.1 5.2 34 299-333 7-40 (228)
440 2ga8_A Hypothetical 39.9 kDa p 90.5 0.17 5.7E-06 49.8 3.8 29 294-322 19-49 (359)
441 3sfz_A APAF-1, apoptotic pepti 90.4 0.39 1.3E-05 55.8 7.5 40 298-337 148-190 (1249)
442 1wp9_A ATP-dependent RNA helic 90.3 1.2 4.1E-05 45.3 10.4 53 299-352 25-78 (494)
443 1lw7_A Transcriptional regulat 90.3 0.12 4.1E-06 51.4 2.6 27 294-320 165-193 (365)
444 2vf7_A UVRA2, excinuclease ABC 90.3 0.12 4.1E-06 57.0 2.8 29 294-322 33-61 (842)
445 4a82_A Cystic fibrosis transme 90.2 0.098 3.4E-06 55.6 2.0 31 288-318 357-388 (578)
446 3qf7_A RAD50; ABC-ATPase, ATPa 90.2 0.18 6.1E-06 50.2 3.8 26 294-320 21-46 (365)
447 1ypw_A Transitional endoplasmi 90.1 0.081 2.8E-06 58.6 1.3 37 293-333 507-543 (806)
448 2ocp_A DGK, deoxyguanosine kin 90.1 0.19 6.4E-06 46.7 3.7 26 296-321 1-26 (241)
449 3pvs_A Replication-associated 90.1 0.44 1.5E-05 48.7 6.7 35 299-337 52-86 (447)
450 2r62_A Cell division protease 90.0 0.096 3.3E-06 49.5 1.6 21 300-320 47-67 (268)
451 1w36_D RECD, exodeoxyribonucle 89.9 0.32 1.1E-05 52.0 5.7 40 296-335 163-205 (608)
452 2hf9_A Probable hydrogenase ni 89.9 0.22 7.5E-06 45.4 3.9 37 299-337 40-76 (226)
453 1u0j_A DNA replication protein 89.7 0.25 8.7E-06 46.5 4.1 26 295-320 102-127 (267)
454 3tmk_A Thymidylate kinase; pho 89.6 0.26 8.7E-06 45.0 4.0 27 295-321 3-29 (216)
455 2c9o_A RUVB-like 1; hexameric 89.5 0.28 9.5E-06 50.4 4.7 39 294-334 60-98 (456)
456 2wji_A Ferrous iron transport 89.4 0.2 6.9E-06 43.2 3.1 20 299-318 5-24 (165)
457 3ozx_A RNAse L inhibitor; ATP 89.4 0.18 6.2E-06 52.9 3.2 26 294-319 22-47 (538)
458 3lfu_A DNA helicase II; SF1 he 89.3 0.5 1.7E-05 50.8 6.8 52 297-348 22-77 (647)
459 2r44_A Uncharacterized protein 89.2 0.23 8E-06 48.4 3.7 37 294-334 43-79 (331)
460 3co5_A Putative two-component 89.2 0.087 3E-06 44.6 0.5 23 297-319 27-49 (143)
461 1ni3_A YCHF GTPase, YCHF GTP-b 89.0 0.23 7.8E-06 49.8 3.5 29 291-319 13-42 (392)
462 1z2a_A RAS-related protein RAB 89.0 0.22 7.6E-06 42.6 3.1 20 300-319 8-27 (168)
463 3pxg_A Negative regulator of g 88.9 0.24 8.1E-06 51.1 3.7 26 298-323 202-227 (468)
464 3hjn_A DTMP kinase, thymidylat 88.9 0.51 1.8E-05 42.3 5.5 34 299-333 2-35 (197)
465 4hlc_A DTMP kinase, thymidylat 88.8 0.35 1.2E-05 43.7 4.3 35 297-333 2-36 (205)
466 1jr3_A DNA polymerase III subu 88.8 0.3 1E-05 48.4 4.2 25 298-322 39-63 (373)
467 1oix_A RAS-related protein RAB 88.8 0.22 7.4E-06 44.3 2.9 21 299-319 31-51 (191)
468 1bif_A 6-phosphofructo-2-kinas 88.7 0.34 1.2E-05 49.9 4.8 38 297-335 39-76 (469)
469 1a5t_A Delta prime, HOLB; zinc 88.7 0.21 7.1E-06 49.0 3.0 24 299-322 26-49 (334)
470 2dyk_A GTP-binding protein; GT 88.7 0.24 8.3E-06 42.1 3.0 19 300-318 4-22 (161)
471 2zej_A Dardarin, leucine-rich 88.6 0.2 6.8E-06 44.1 2.5 20 300-319 5-24 (184)
472 2o5v_A DNA replication and rep 88.6 0.23 8E-06 49.1 3.2 35 284-319 13-48 (359)
473 1kao_A RAP2A; GTP-binding prot 88.6 0.25 8.5E-06 42.1 3.0 20 300-319 6-25 (167)
474 1qde_A EIF4A, translation init 88.5 0.68 2.3E-05 42.0 6.2 42 294-335 48-91 (224)
475 2ce2_X GTPase HRAS; signaling 88.4 0.24 8.3E-06 42.1 2.9 20 300-319 6-25 (166)
476 1e69_A Chromosome segregation 88.4 0.28 9.4E-06 47.9 3.6 25 294-319 22-46 (322)
477 2f9l_A RAB11B, member RAS onco 88.4 0.25 8.6E-06 44.1 3.1 22 299-320 7-28 (199)
478 1yks_A Genome polyprotein [con 88.3 0.61 2.1E-05 47.6 6.3 55 294-352 5-60 (440)
479 1vt4_I APAF-1 related killer D 88.2 0.95 3.2E-05 50.9 8.0 52 296-347 149-204 (1221)
480 1w1w_A Structural maintenance 88.2 0.31 1.1E-05 49.6 4.0 26 294-319 23-48 (430)
481 3sop_A Neuronal-specific septi 88.2 0.24 8.1E-06 47.0 2.8 23 299-321 4-26 (270)
482 2nzj_A GTP-binding protein REM 88.1 0.27 9.2E-06 42.4 3.0 19 300-318 7-25 (175)
483 3pxi_A Negative regulator of g 88.1 0.4 1.4E-05 52.7 5.0 36 299-335 523-558 (758)
484 1u8z_A RAS-related protein RAL 88.1 0.28 9.6E-06 41.9 3.1 20 300-319 7-26 (168)
485 2erx_A GTP-binding protein DI- 88.0 0.28 9.6E-06 42.1 3.0 20 300-319 6-25 (172)
486 1ek0_A Protein (GTP-binding pr 87.9 0.29 9.9E-06 41.9 3.1 21 300-320 6-26 (170)
487 3fgn_A Dethiobiotin synthetase 87.9 0.58 2E-05 43.7 5.3 130 299-461 29-167 (251)
488 3q85_A GTP-binding protein REM 87.8 0.29 1E-05 42.0 3.1 19 300-318 5-23 (169)
489 4f92_B U5 small nuclear ribonu 87.8 2 6.7E-05 51.5 10.9 143 294-459 92-252 (1724)
490 1g16_A RAS-related protein SEC 87.8 0.28 9.6E-06 42.0 2.9 20 300-319 6-25 (170)
491 1z08_A RAS-related protein RAB 87.7 0.3 1E-05 41.9 3.0 21 300-320 9-29 (170)
492 2wjg_A FEOB, ferrous iron tran 87.7 0.3 1E-05 42.9 3.1 20 299-318 9-28 (188)
493 1wms_A RAB-9, RAB9, RAS-relate 87.7 0.3 1E-05 42.3 3.0 19 300-318 10-28 (177)
494 1c1y_A RAS-related protein RAP 87.6 0.31 1.1E-05 41.6 3.1 20 300-319 6-25 (167)
495 3k1j_A LON protease, ATP-depen 87.6 0.22 7.6E-06 53.2 2.5 28 294-321 57-84 (604)
496 1rif_A DAR protein, DNA helica 87.6 0.55 1.9E-05 44.6 5.1 36 299-334 130-165 (282)
497 1z0j_A RAB-22, RAS-related pro 87.6 0.31 1.1E-05 41.8 3.0 21 300-320 9-29 (170)
498 1iqp_A RFCS; clamp loader, ext 87.5 0.33 1.1E-05 46.9 3.6 36 299-334 48-84 (327)
499 2ged_A SR-beta, signal recogni 87.5 0.31 1E-05 43.1 3.0 21 299-319 50-70 (193)
500 4a0g_A Adenosylmethionine-8-am 87.5 5.6 0.00019 43.9 13.7 35 298-333 36-75 (831)
No 1
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=100.00 E-value=1.1e-67 Score=561.88 Aligned_cols=453 Identities=22% Similarity=0.239 Sum_probs=372.9
Q ss_pred HHHHHHhcCCCHHHHHHcCcccccCCceeEEEEeEe-eCCEEEEEEeecCCCccccc-CCCCCccccccccCCCCcEEEE
Q 009230 52 LRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKVFYGLDDIEGESDIIIV 129 (539)
Q Consensus 52 ~~~Yl~~Rgi~~~~~~~~~~~~~~~~~~~~i~fP~~-~~G~~~~~~~R~~~~~~~~~-~~~~~~l~g~~~~~~~~~v~i~ 129 (539)
+++||.+|||+.+++++|++++.+..+..+++|||+ ..|+++++++|..++.|++. +.+...+||++...+.++|+||
T Consensus 14 ~~~YL~~Rgi~~~~~~~~~~~~~~~~g~~~i~fp~~d~~G~~~g~~~R~~~~~~ky~~~~k~~~lyg~~~~~~~~~v~i~ 93 (503)
T 1q57_A 14 RYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGKHLWNGGKKIVVT 93 (503)
T ss_dssp BCCCBTTTTBCHHHHHHHTEEECCBTTBCEEEEEEECTTSCEEEEEEEETTTEEEEEECCCTTCEETGGGCSSEEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHcCeEEECCCCcEEEEEEEECCCCCEEEEEeECCCCCceEecCCCCCceECccccCCCCEEEEE
Confidence 678999999999999999987665445578999988 88999999999876555542 2345789999988777899999
Q ss_pred echhhHHHHHHh-CC-CceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHHHHHHHHH
Q 009230 130 EGEMDKLSMEEA-GF-LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQALAEELARR 207 (539)
Q Consensus 130 EG~~Dalsl~~~-g~-~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~~~~~~~~ 207 (539)
||++|+||++|+ |. .++++++++.... ...+.+++++|+++++|++|+|||+||+++++++++.
T Consensus 94 EG~~D~ls~~~~~g~~~~v~slg~~~~~~--------------~~~l~~~l~~l~~~~~ivl~~D~D~aG~~aa~~~~~~ 159 (503)
T 1q57_A 94 EGEIDMLTVMELQDCKYPVVSLGHGASAA--------------KKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQV 159 (503)
T ss_dssp SSHHHHHHHTTTTTTCSCEEEESSTTTTH--------------HHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCcEEEECCcccchh--------------HHHHHHHHHhhcCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 999999999999 76 3566765443321 1234445677888899999999999999999999999
Q ss_pred hcCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHHhccccCccccccccchHHHHHHHhhccCCCcccccc-Cch
Q 009230 208 VGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGIST-GWR 286 (539)
Q Consensus 208 l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~t-g~~ 286 (539)
|...+|+++.+| +|||||+|++.|.+++.+++++|.++.+.+++++.++++++++.+. .+...+++| ||+
T Consensus 160 l~~~~~~~~~~p-------~kD~nd~l~~~g~~~~~~~i~~a~~~~~~~i~~~~~~~~~i~~~~~--~~~~~~i~t~G~~ 230 (503)
T 1q57_A 160 LPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVWNAGPWIPDGVVSALSLRERIREHLS--SEESVGLLFSGCT 230 (503)
T ss_dssp SCGGGEEECCCS-------SSSHHHHHTTSCHHHHHHHHTTCCCCCCSSEEEGGGGHHHHHHHHH--HSCTTCSCCSSCT
T ss_pred cccCcEEEEeCC-------CCCHHHHHHhcCHHHHHHHHHhcCCCCHHHhcChHHHHHHHHhhhc--ccccCCccccchh
Confidence 976578777654 8999999999999999999999999999999999999999988764 356789999 999
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc---cccCCC
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE---ANYGGS 362 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~---i~~~~~ 362 (539)
.||++++ +++|++++|+|+||+|||+|++|++.+++.++|.+|+|||+||+++++..|+++..+++++.+ ++.+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g-- 308 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKRE-- 308 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHH--
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccC--
Confidence 9999998 999999999999999999999999999998558999999999999999999999999998764 4332
Q ss_pred CCCCCHHHHHHHHHHh-hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLT 441 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l-~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~ 441 (539)
.++++++.++.+.+ ....+++. +..+..+++++...++.++.++++++||||++. ++.......++.+.+.++++
T Consensus 309 --~l~~~~~~~~~~~~~~~~~l~i~-~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~-~l~~~~~~~~~~~~~~~~~~ 384 (503)
T 1q57_A 309 --IIENGKFDQWFDELFGNDTFHLY-DSFAEAETDRLLAKLAYMRSGLGCDVIILDHIS-IVVSASGESDERKMIDNLMT 384 (503)
T ss_dssp --HHHTSHHHHHHHHHHTTTCEEEE-CCC---CHHHHHHHHHHHHHTTCCSEEEEECTT-CCCSCCSCCCHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHhccCCEEEE-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEccch-hcCCCCCCCCHHHHHHHHHH
Confidence 45555666665554 34445552 222347899999999999999999999999555 44433223577788999999
Q ss_pred HHHHHHHHhCcEEEEEec-CCCCCCC----CCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEee-C
Q 009230 442 MVKRFAQHHACHVWFVAH-PRQLHNW----VGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR-N 515 (539)
Q Consensus 442 ~Lk~lA~~~~i~vi~~~q-~r~~~~~----~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R-~ 515 (539)
.|+.||+++||+||+++| ++ .+++ .+++|.++|++||+.|++.||+||+|++++..+ .++.+++.|.|+| +
T Consensus 385 ~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r~~~~~--~~~~~~l~v~K~R~~ 461 (503)
T 1q57_A 385 KLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQGD--MPNLVLVRILKCRFT 461 (503)
T ss_dssp HHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEECSSSS--CTTEEEEEEEEETTT
T ss_pred HHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhecCcEEEEEEeCCcCC--CCCeEEEEEEeccCC
Confidence 999999999999999999 76 4433 367899999999999999999999999987533 2357899999999 8
Q ss_pred CCcceeeeEEEEEeCCCceeccC
Q 009230 516 KVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 516 g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|++|.+ +.+.|+++++||.++
T Consensus 462 G~~g~~--~~l~f~~~~~~f~~~ 482 (503)
T 1q57_A 462 GDTGIA--GYMEYNKETGWLEPS 482 (503)
T ss_dssp CCCEEE--EEEEECTTTCCEEEE
T ss_pred CCCCce--EEEEEEcCCceEecC
Confidence 988764 379999999999875
No 2
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=100.00 E-value=8.9e-47 Score=374.43 Aligned_cols=267 Identities=21% Similarity=0.261 Sum_probs=228.4
Q ss_pred cchHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 261 RDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 261 ~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
.++++++++++++..+...|+||||+.||++++ |++|+|++|+|+||+|||+|+++++.+++.+ |.+|+|||+||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-g~~Vl~fSlEms~~ 87 (338)
T 4a1f_A 9 ESAMDLITENQRKGSLEVTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-DRGVAVFSLEMSAE 87 (338)
T ss_dssp HHHHHHHHHHHHHTTTCCCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCEEEEEESSSCHH
T ss_pred HHHHHHHHHHHhcCCCCcCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCHH
Confidence 455677877766235678999999999999998 9999999999999999999999999999985 99999999999999
Q ss_pred HHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc-CCcEEE
Q 009230 340 EHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH-GVRGLV 415 (539)
Q Consensus 340 ~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~-~~~~vv 415 (539)
++..|+++..++++..+++.+ .++.+++.++ ...+.+.+++|. +.+..++++|.+.+++++.++ ++++||
T Consensus 88 ql~~Rlls~~~~v~~~~l~~g----~Ls~~e~~~l~~a~~~l~~~~l~I~--d~~~~si~~i~~~ir~l~~~~gg~~lIV 161 (338)
T 4a1f_A 88 QLALRALSDLTSINMHDLESG----RLDDDQWENLAKCFDHLSQKKLFFY--DKSYVRIEQIRLQLRKLKSQHKELGIAF 161 (338)
T ss_dssp HHHHHHHHHHHCCCHHHHHHT----CCCHHHHHHHHHHHHHHHHSCEEEE--CCTTCCHHHHHHHHHHHHHHCTTEEEEE
T ss_pred HHHHHHHHHhhCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCeEEe--CCCCCcHHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999876 7999988765 455666677773 356678999999999999998 899999
Q ss_pred EccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 416 IDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 416 ID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
|| |++++.......++.+++.++++.||.||+++|||||+++| +|..+++.+++|.++||+||++|+|.||+|++|+|
T Consensus 162 ID-yLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~R 240 (338)
T 4a1f_A 162 ID-YLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLYR 240 (338)
T ss_dssp EE-EEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEEC
T ss_pred Ee-chHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEec
Confidence 99 77777542111233356889999999999999999999999 99988888899999999999999999999999999
Q ss_pred CCCC--------------CC----------------------CCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 495 NRDP--------------EA----------------------GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 495 ~~~~--------------~~----------------------~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
++.. +. ..++.++|+|.|||||++|++ .+.|++++.||.+.
T Consensus 241 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eiiiaK~R~G~~g~v---~l~f~~~~~~F~~~ 317 (338)
T 4a1f_A 241 GYIYQMRAEDNKIDKLKKEGKIEEAQELYLKVNEERRIHKQNGSIEEAEIIVAKNRNGATGTV---YTRFNAPFTRYEDM 317 (338)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTSCCEEE---EEEEEGGGTEECCC
T ss_pred chhcccccccccccccccccccccccchhhhhhhhhcccccccCCCceEEEEEeccCCCCceE---EEEEccccceeccc
Confidence 7521 11 125679999999999999875 79999999999874
No 3
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=100.00 E-value=6e-42 Score=341.20 Aligned_cols=272 Identities=17% Similarity=0.237 Sum_probs=222.3
Q ss_pred ccccccchHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..++.++++++.+.+++..+...++||||+.||++++ |++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~-g~~vl~~sl 104 (315)
T 3bh0_A 26 DDGSIDEALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 104 (315)
T ss_dssp CCCCCHHHHHHHHHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT-TCEEEEEES
T ss_pred CcccHHHHHHHHHHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-CCeEEEEEC
Confidence 34455666555444443324556899999999999998 9999999999999999999999999999986 899999999
Q ss_pred CCCHHHHHHHHHHHhhCCCccccccCCCCCC--CCHHHHHH---HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc
Q 009230 335 ENKVREHARKLLEKHIKKPFFEANYGGSAER--MTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409 (539)
Q Consensus 335 E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--l~~~~~~~---~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~ 409 (539)
||+++++..|+++..++++..+++.+ . ++.+++.+ +...+...++++. +....++++|.+.+++++.++
T Consensus 105 E~s~~~l~~R~~~~~~~i~~~~l~~~----~~~l~~~~~~~l~~a~~~l~~~~i~i~--d~~~~~~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 105 EMGKKENIKRLIVTAGSINAQKIKAA----RRDFASEDWGKLSMAIGEISNSNINIF--DKAGQSVNYIWSKTRQTKRKN 178 (315)
T ss_dssp SSCHHHHHHHHHHHHTTCCHHHHHSC----HHHHCSSCHHHHHHHHHHHHTSCEEEE--CCSCCBHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHhcC----CCCCCHHHHHHHHHHHHHHhCCCEEEE--CCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998877644 3 55555543 4455655566652 245578999999999999989
Q ss_pred CCc--EEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhcc
Q 009230 410 GVR--GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486 (539)
Q Consensus 410 ~~~--~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~a 486 (539)
+++ +|||| +++++.......++.+.+.++++.|+.+|+++|||||+++| +|..+++.+++|.++|++||+.|+|.|
T Consensus 179 ~~~~~lVVID-~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~a 257 (315)
T 3bh0_A 179 PGKRVIVMID-YLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDA 257 (315)
T ss_dssp SSCCEEEEEE-CGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHHC
T ss_pred CCCCeEEEEe-CchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhhC
Confidence 999 99999 55555433233567788999999999999999999999999 888877778899999999999999999
Q ss_pred ceEEEEEeCCC--CCCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 487 DNGIVIHRNRD--PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 487 D~vl~l~r~~~--~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|+||+|+|++. ++...++.+++.|.|||+|++|++ .+.|+++++||.+.
T Consensus 258 D~vi~L~r~~~~~~~~~~~~~~~l~v~K~R~G~~g~~---~l~f~~~~~~f~~~ 308 (315)
T 3bh0_A 258 DIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTV---SLAFIKEYGNFVNL 308 (315)
T ss_dssp SEEEEEEEHHHHCTTCTTTTEEEEEEEEETTSCCEEE---EEEEEGGGTEEEEC
T ss_pred CEEEEEecccccCccccCCCcEEEEEECCcCCCCceE---EEEEECCCCeEecC
Confidence 99999999752 222234578999999999998865 69999999999875
No 4
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=100.00 E-value=1.6e-41 Score=352.06 Aligned_cols=272 Identities=17% Similarity=0.234 Sum_probs=225.5
Q ss_pred ccccccchHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 256 GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 256 ~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..++.++..+..+.++...+...|+||||+.||++++ |++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+
T Consensus 155 ~~~~~~~~~~~~~~~i~~~~~~~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 155 DDGSIDEALVTVYEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp CCCCCHHHHHHHHHHHHTCCSSCCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred CCccHHHHHHHHHHHHHHhhcCCCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 44455555544333332211557899999999999998 9999999999999999999999999999997 999999999
Q ss_pred CCCHHHHHHHHHHHhhCCCccccccCCCCCC--CCHHHHHH---HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHc
Q 009230 335 ENKVREHARKLLEKHIKKPFFEANYGGSAER--MTVEEFEQ---GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRH 409 (539)
Q Consensus 335 E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~--l~~~~~~~---~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~ 409 (539)
||+++++..|+++..++++..+++.+ . ++.++|.+ +...+...++++. +.+..++++|.+.+++++.++
T Consensus 234 Ems~~ql~~R~~~~~~~i~~~~l~~g----~~~l~~~~~~~l~~a~~~l~~~~l~i~--d~~~~s~~~i~~~ir~l~~~~ 307 (444)
T 3bgw_A 234 EMGKKENIKRLIVTAGSINAQKIKAA----RRDFASEDWGKLSMAIGEISNSNINIF--DKAGQSVNYIWSKTRQTKRKN 307 (444)
T ss_dssp SSCTTHHHHHHHHHHSCCCHHHHHHT----GGGTCCSCHHHHHHHHHHHHTSCEEEE--CCSSCBHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHhcc----cCCCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998888755 4 66555544 4556666667763 245678999999999999999
Q ss_pred CCc--EEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhcc
Q 009230 410 GVR--GLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC 486 (539)
Q Consensus 410 ~~~--~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~a 486 (539)
+++ +|||| +++++.......++.+.+.++++.|+.+|+++|||||+++| +|..+.+.+++|.++|++||++|+|.|
T Consensus 308 ~~~~~lIVID-~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~a 386 (444)
T 3bgw_A 308 PGKRVIVMID-YLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDA 386 (444)
T ss_dssp CSSCEEEEEE-CSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHC
T ss_pred CCCCeEEEEe-cHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhC
Confidence 999 99999 66666543223577788999999999999999999999999 998887778999999999999999999
Q ss_pred ceEEEEEeCCCC--CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 487 DNGIVIHRNRDP--EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 487 D~vl~l~r~~~~--~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
|+|++|+|++.. +...++..++.|.|||+|++|++ .+.|+++++||.+.
T Consensus 387 D~Vi~L~r~~~~~~~~~~~~~~~l~i~K~R~G~~g~v---~l~f~~~~~rf~~~ 437 (444)
T 3bgw_A 387 DIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTV---SLAFIKEYGNFVNL 437 (444)
T ss_dssp SEEEECCBGGGTCTTCSSTTEEEEEEEEESSSCCEEE---EEEEETTTTEEECC
T ss_pred CEEEEEeccccccccccCCCeEEEEEEcccCCCCeEE---EEEEEcCccEEecC
Confidence 999999998642 22234678999999999998865 79999999999885
No 5
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=100.00 E-value=1.6e-39 Score=339.27 Aligned_cols=254 Identities=19% Similarity=0.264 Sum_probs=212.8
Q ss_pred CCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 275 SGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 275 ~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
.+...++||||+.||.+++ |++|++++|+|+||+|||+|+++++.+++.+.|.+|+|||+||+++++..|+++..++++
T Consensus 177 ~~~~~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 177 KGEVAGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp ------CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 3456899999999999998 999999999999999999999999999998558999999999999999999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHH---HHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC--C-
Q 009230 354 FFEANYGGSAERMTVEEFEQGK---AWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR--P- 427 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~---~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~--~- 427 (539)
..+++.+ .+++++|.++. +.+...++++. +.+..+++++.+.+++++.++++++|||| +.+++... .
T Consensus 257 ~~~l~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~s~~~l~~~~~~l~~~~~~~lIvID-~l~~~~~~~~~~ 329 (444)
T 2q6t_A 257 MNRVRLG----QLTDRDFSRLVDVASRLSEAPIYID--DTPDLTLMEVRARARRLVSQNQVGLIIID-YLQLMSGPGSGK 329 (444)
T ss_dssp TTTCCGG----GCCHHHHHHHHHHHHHHHTSCEEEE--CCTTCBHHHHHHHHHHHHHHSCCCEEEEE-CGGGCBCC----
T ss_pred HHHHhCC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHcCCCEEEEc-ChhhcCCCcCCC
Confidence 9888765 78988887653 45555566662 24566899999999999999999999999 55555432 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC--CCCCCC
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP--EAGPID 504 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~--~~~~~~ 504 (539)
...++.+.+.++++.|+.+|+++|||||+++| +|..+.+.+++|.++|++||++|++.||+|++|+|++.. +...++
T Consensus 330 ~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r~~~~~~~~~~~~ 409 (444)
T 2q6t_A 330 SGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAG 409 (444)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEEGGGTCSSSSCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEecccccCCcCCCCC
Confidence 22467788999999999999999999999999 888877778899999999999999999999999998743 222346
Q ss_pred cEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 505 RVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 505 ~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
.+++.|.|+|+|++|++ .+.|+++++||.+.
T Consensus 410 ~~~l~i~K~R~g~~g~~---~l~f~~~~~~f~~~ 440 (444)
T 2q6t_A 410 IAEIIVGKQRNGPTGTV---ELQFHASHVRFNDL 440 (444)
T ss_dssp EEEEEEEECSSSCCEEE---EEEEETTTTEEECC
T ss_pred eEEEEEEecCCCCceEE---EEEEECCccEEecC
Confidence 78999999999998864 79999999999875
No 6
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=100.00 E-value=1.5e-37 Score=325.17 Aligned_cols=266 Identities=19% Similarity=0.271 Sum_probs=217.2
Q ss_pred chHHHHHHHhhccCCCccccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Q 009230 262 DYFDEIDAYYHRTSGDEFGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340 (539)
Q Consensus 262 ~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~ 340 (539)
++++++++.+++ .+...++||||+.||++++ |++|++++|+|+||+|||+|+++++.+++...|.+|+|||+||+.++
T Consensus 168 ~~~~~~~~~~~~-~~~~~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~ 246 (454)
T 2r6a_A 168 QTYDNIEMLHNR-DGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQ 246 (454)
T ss_dssp HHHHHHHHHHSC-CCCCCSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHH
T ss_pred HHHHHHHHHHhC-CCCCCCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence 445666665443 4567899999999999998 99999999999999999999999999999865889999999999999
Q ss_pred HHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH---HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Q 009230 341 HARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG---KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417 (539)
Q Consensus 341 ~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~---~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID 417 (539)
+..|+++..++++..+++.+ .++.+++..+ .+.+...++++. +.+..+++++...++.++.++++++||||
T Consensus 247 l~~r~~~~~~~~~~~~l~~g----~l~~~~~~~~~~a~~~l~~~~l~i~--d~~~~s~~~i~~~~~~l~~~~~~~livID 320 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTG----KLTPEDWGKLTMAMGSLSNAGIYID--DTPSIRVSDIRAKCRRLKQESGLGMIVID 320 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTS----CCCHHHHHHHHHHHHHHHSSCEEEE--CCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHHHHHHHHcCCCHHHHhcC----CCCHHHHHHHHHHHHHHhcCCEEEE--CCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 99999998999999888655 7888887664 345555566663 24566899999999999888899999999
Q ss_pred cccccccCCC-CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 418 PYNELDHQRP-VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 418 ~~~~l~~~~~-~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+.+++.... ...++.+.+.++++.|+.+|+++||+||+++| +|..+.+.+++|.++|++||+.+++.||.|++|+++
T Consensus 321 -~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 321 -YLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp -CGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred -cHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 555544321 12356678899999999999999999999999 888877777889999999999999999999999998
Q ss_pred CCCC--CCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceeccC
Q 009230 496 RDPE--AGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMDI 538 (539)
Q Consensus 496 ~~~~--~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~~ 538 (539)
+..+ ...++.+++.|.|||+|++|++ .+.|+++++||.+.
T Consensus 400 ~~~~~~~~~~~~~~l~i~K~R~G~~g~v---~l~f~~~~~~f~~~ 441 (454)
T 2r6a_A 400 DYYNKDSENKNIIEIIIAKQRNGPVGTV---QLAFIKEYNKFVNL 441 (454)
T ss_dssp TC-------CCEEEEEEEEESSSCCEEE---EEEEETTTTEEECC
T ss_pred cccCcccCCCCeEEEEEecccCCCCeEE---EEEEEcCccEEeCC
Confidence 7532 1234678999999999998865 79999999999875
No 7
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.97 E-value=1.7e-30 Score=257.15 Aligned_cols=264 Identities=19% Similarity=0.220 Sum_probs=182.5
Q ss_pred HHHHHHHhhccCCCcccccc-Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 264 FDEIDAYYHRTSGDEFGIST-GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 264 ~~~i~~~~~~~~~~~~gi~t-g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
++.+++.++. ....+++| |++.||.+++ +++|++++|+|+||+|||||+.+++..++...|.+|+|+++|++..++
T Consensus 2 ~~~l~~~~~~--~~~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~ 79 (296)
T 1cr0_A 2 RERIREHLSS--EESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEET 79 (296)
T ss_dssp HHHHHHHHHH--CCCCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHH
T ss_pred hhHhhhhhcc--CCcCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHH
Confidence 3455554433 66789999 9999999998 999999999999999999999999999887657799999999999999
Q ss_pred HHHHHHHhhCCCccc---cccCCCCCCCCHHHHHHHHHHh-hccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Q 009230 342 ARKLLEKHIKKPFFE---ANYGGSAERMTVEEFEQGKAWL-SNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVID 417 (539)
Q Consensus 342 ~~r~~~~~~~~~~~~---i~~~~~~~~l~~~~~~~~~~~l-~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID 417 (539)
..|+.+...+.++.. +..+ .++.+++.++.+.+ ....+++. +.....++.++...++.++..+++++||||
T Consensus 80 ~~r~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~l~~~~l~i~-~~~~~~~~~~l~~~~~a~~~~~~p~llilD 154 (296)
T 1cr0_A 80 AEDLIGLHNRVRLRQSDSLKRE----IIENGKFDQWFDELFGNDTFHLY-DSFAEAETDRLLAKLAYMRSGLGCDVIILD 154 (296)
T ss_dssp HHHHHHHHTTCCGGGCHHHHHH----HHHHTHHHHHHHHHHSSSCEEEE-CCCCSCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHHHcCCChhhccccccC----CCCHHHHHHHHHHHhccCCEEEE-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999888777766432 1111 12334444444443 32234442 212456788888888876777899999999
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCC---CCCCCCCCcccccccccchhccceEEEEE
Q 009230 418 PYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLH---NWVGEPPNLYDISGSAHFINKCDNGIVIH 493 (539)
Q Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~---~~~~~~~~~~~l~gs~~i~~~aD~vl~l~ 493 (539)
..+.+.... ...++...+.++++.|+.+|+++|++||+++| +|... .+.+++|.++|++||+.+++.||.|++|+
T Consensus 155 ept~~~~~~-~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~ 233 (296)
T 1cr0_A 155 HISIVVSAS-GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALE 233 (296)
T ss_dssp EEC------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEE
T ss_pred CccccCCCC-CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEe
Confidence 666544221 11233356788999999999999999999999 65221 13468899999999999999999999999
Q ss_pred eCCCCCCCCCCcEEEEEEEee-CCCcceeeeEEEEEeCCCceeccCC
Q 009230 494 RNRDPEAGPIDRVQVCVRKVR-NKVVGTIGEAFLSYNRVTGEYMDIV 539 (539)
Q Consensus 494 r~~~~~~~~~~~~~l~i~K~R-~g~~G~~~~~~l~fd~~~~rf~~~~ 539 (539)
+.+..+ .++..++.+.|+| +|+.|.+ ..+.|++++++|.++.
T Consensus 234 ~~~~~~--~~~~~~l~i~K~R~~g~~g~~--~~~~f~~~~~~f~~~~ 276 (296)
T 1cr0_A 234 RNQQGD--MPNLVLVRILKCRFTGDTGIA--GYMEYNKETGWLEPSS 276 (296)
T ss_dssp EC---------CEEEEEEEETTTCCCEEE--EEEEECTTTCCEEECC
T ss_pred cCcccC--CCCeEEEEEEccccCCCCCce--EEEEEEcCccEEecCC
Confidence 987532 1357899999999 7988864 2799999999998863
No 8
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.96 E-value=5.7e-29 Score=239.76 Aligned_cols=186 Identities=25% Similarity=0.269 Sum_probs=142.0
Q ss_pred cccCCCCCCcHHHHHHHHhcCCCHHHHHHcCcccccCCceeEEEEeEe-eCCEEEEEEeecCCCccccc-CCCCCccccc
Q 009230 40 EDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHGHEVVIAFPYW-RNGKLVNCKYRDFNKKFWQE-KDTEKVFYGL 117 (539)
Q Consensus 40 ~~~~~~~p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~~~~~i~fP~~-~~G~~~~~~~R~~~~~~~~~-~~~~~~l~g~ 117 (539)
.+.+...|.. .+.+||.+|||+.++++.|++......+...++||+. .+|+++++++|..++.|++. +.+...+||+
T Consensus 66 ~~~~~~~~~~-~~~~YL~~RGi~~~~i~~f~~~~~~~~g~~~i~fp~~d~~G~vvg~~~R~~~~~~Ky~~s~k~~~lyg~ 144 (255)
T 1nui_A 66 YNVWNFGESN-GRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTTGSHKSDALFGK 144 (255)
T ss_dssp BCCBCGGGTT-CBCCCBGGGTBCHHHHHHHTEEEEEETTEEEEEEEEECTTSCEEEEEEECTTCCCEEEECCCTTCCTTG
T ss_pred cccccccccH-HHHHHHHHcCCCHHHHHHhCeEEEccCCcEEEEEEEECCCCCEEEEEEECCCCCceEecCCCCccccCc
Confidence 3334444433 3678999999999999999886432223456999988 78999999999876666642 2355689999
Q ss_pred cccCCCCcEEEEechhhHHHHHHh-CC-CceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCc
Q 009230 118 DDIEGESDIIIVEGEMDKLSMEEA-GF-LNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDP 195 (539)
Q Consensus 118 ~~~~~~~~v~i~EG~~Dalsl~~~-g~-~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~ 195 (539)
+...+.++|+||||++|+||++|+ |. .++++++++.... ..+|.+++..|.++++||||+|||+
T Consensus 145 ~~~~~~~~v~i~EG~~Dals~~~~~g~~~~v~slg~~~~~~--------------~~~l~~~~~~l~~~~~iil~~D~D~ 210 (255)
T 1nui_A 145 HLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAA--------------KKTCAANYEYFDQFEQIILMFDMDE 210 (255)
T ss_dssp GGCCCBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTH--------------HHHHHHTHHHHTTBSCEEEECCSSH
T ss_pred cccCCCCEEEEEeCHHHHHHHHHhhCCCcEEEECCCccchh--------------HHHHHHHHHHhcCCCEEEEEeCCCH
Confidence 988767889999999999999999 64 3456654333220 1234455677888899999999999
Q ss_pred cchHHHHHHHHHhcCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHH
Q 009230 196 PGQALAEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVE 247 (539)
Q Consensus 196 ~G~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~ 247 (539)
||+++++++++.|...+|+++.+| +|||||+|+++|.+++.++|+
T Consensus 211 aG~~aa~~~~~~l~~~~v~~~~~p-------~kD~nd~l~~~g~~~~~~~i~ 255 (255)
T 1nui_A 211 AGRKAVEEAAQVLPAGKVRVAVLP-------CKDANECHLNGHDREIMEQVW 255 (255)
T ss_dssp HHHHHHHHHHHHSCTTTEEECCCS-------SSSHHHHHTTTTHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCC-------CCCHHHHHHhcCHHHHHHHhC
Confidence 999999999999965477766643 899999999999999988874
No 9
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.95 E-value=7.1e-28 Score=232.19 Aligned_cols=222 Identities=15% Similarity=0.135 Sum_probs=157.9
Q ss_pred CCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 276 GDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
.+..++|||++.||++++ |++|++++|+|+||+|||+|++|++.+.+.+.+.+|+|+|+||+++++..|+.+...+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~- 85 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF- 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH-
T ss_pred CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh-
Confidence 577899999999999994 99999999999999999999999999987766899999999999999999986543222
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHH
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTET 433 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~ 433 (539)
......+ .+...++............+ ........+.+.+.+..++..+++++||||++..+.... .+.
T Consensus 86 -~~~~~~~---~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~----~~~ 154 (251)
T 2zts_A 86 -EKYEKEG---KIAIVDGVSSVVGLPSEEKF---VLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL----EEE 154 (251)
T ss_dssp -HHHHHTT---SEEEEC----------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS----SSG
T ss_pred -HHHHhcC---cchhhhhHHHHhhcccchhc---cccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc----cCh
Confidence 1111000 11000000000000000111 113455778899999999999999999999888776432 122
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEe
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~ 513 (539)
..+.+++..|+.+|+++||+|++++|... +...++++++.+++.||.||.|++.+.... ....+.|.|+
T Consensus 155 ~~~~~~~~~L~~~a~~~~i~vi~~~q~~~--------~~~~~~~~~~~~~~~aD~vi~l~~~~~~~~---~~R~l~I~K~ 223 (251)
T 2zts_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPD--------PQHGKLSRYGIEEFIARGVIVLDLQEKNIE---LKRYVLIRKM 223 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC------------CCSSSSSCGGGGCSEEEEEEEEECSSS---EEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEec--------ccccccccCCceeEEeeEEEEEEEEecCCe---EEEEEEEEEc
Confidence 34678899999999999999999999321 234567889999999999999998765332 2467999999
Q ss_pred eCCCcce
Q 009230 514 RNKVVGT 520 (539)
Q Consensus 514 R~g~~G~ 520 (539)
|+++.+.
T Consensus 224 R~~~~~~ 230 (251)
T 2zts_A 224 RETRHSM 230 (251)
T ss_dssp TTCCCCC
T ss_pred CCCCCCC
Confidence 9987654
No 10
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=99.95 E-value=2.8e-28 Score=249.86 Aligned_cols=178 Identities=19% Similarity=0.248 Sum_probs=142.7
Q ss_pred cHHHHHHHHhcCCCHHHHHHcCcccccC---------------------------------CceeEEEEeEe-eCCEEEE
Q 009230 49 GNELRAYFAERLISAETLRRNRVMQKRH---------------------------------GHEVVIAFPYW-RNGKLVN 94 (539)
Q Consensus 49 ~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~---------------------------------~~~~~i~fP~~-~~G~~~~ 94 (539)
...+.+||.+|||+.++++.|++++... ..+++|+||++ ..|++++
T Consensus 123 ~~~a~~YL~~RGi~~~~i~~f~lGyap~~~~l~~~l~~~~~~~~~l~~~Gl~~~~~g~~~d~f~~ri~fPi~d~~G~vig 202 (407)
T 2au3_A 123 NREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVLKENDLLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIG 202 (407)
T ss_dssp CHHHHHHHHHTTCCHHHHHHTTCEECCCHHHHHHHHHHHTCHHHHHTTTCEECSSTTCCEETTTTEEEEEEECTTSCEEE
T ss_pred ChHHHHHHHHcCCCHHHHHHhCCCCCCchHHHHHHHHhcCCCHHHHHHCCceEecCCCcccccCCeEEEEEECCCCCEEE
Confidence 3568899999999999999998753321 11469999988 8899999
Q ss_pred EEee-cC---CCcccccC-----CCCCccccccccC----CCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCC
Q 009230 95 CKYR-DF---NKKFWQEK-----DTEKVFYGLDDIE----GESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKN 161 (539)
Q Consensus 95 ~~~R-~~---~~~~~~~~-----~~~~~l~g~~~~~----~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~ 161 (539)
+++| .+ .+||.+.+ .+...+||++.+. +.++|+||||++|+||++|+|+.++|+.. |++.
T Consensus 203 f~gRr~l~~~~pKylnspet~~f~k~~~lygl~~a~~~i~~~~~viivEG~~Dvlsl~q~G~~n~VA~l-Gtal------ 275 (407)
T 2au3_A 203 FGGRRIVEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPL-GTAL------ 275 (407)
T ss_dssp EEEEECSCCSSCSEEECCCCSSCCGGGCEETHHHHHHHHHHHTCEEECSSHHHHHHHHHTTCCSEEEES-SSSC------
T ss_pred EEEEEecCCCCCeeecCCCCCCCCCCccccChHHHHHHhccCCeEEEEechHhHHHHHHCCCCcEEEcC-cccC------
Confidence 9999 55 46788754 3456789998653 35789999999999999999999888864 5432
Q ss_pred CCChhhhhhhHHHHhHHHHhccC-CEEEEEecCCccchHHHHHHHHHhc--CCceEEEecCCCCCCCCCCChHHHHHhcC
Q 009230 162 VPSEEQDTKYQYLWNCKMYLKQA-SRIILATDGDPPGQALAEELARRVG--RERCWRVRWPKKNDVDHFKDANEVLMYLG 238 (539)
Q Consensus 162 l~~~~~~~~~~~l~~~~~~l~~~-~~ivl~~DnD~~G~~~~~~~~~~l~--~~~~~~~~~p~~~~~~~~kD~nd~l~~~g 238 (539)
+ ..++..|.++ ++|++|+|||.||++|+.++++.|. +..++++.+| .+|||||+++++|
T Consensus 276 -t-----------~~~~~~L~r~~~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~~lP------~gkDpdd~l~~~g 337 (407)
T 2au3_A 276 -T-----------QNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPVYLP------EGYDPDEFIKEFG 337 (407)
T ss_dssp -C-----------HHHHHHHHTTCSEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCC------TTCCHHHHHHHHC
T ss_pred -C-----------HHHHHHHHhcCCeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEEECC------CCCChHHHHHhcC
Confidence 1 1124566665 7999999999999999999999884 3467788887 5799999999999
Q ss_pred cchHHHHHHhccc
Q 009230 239 PGALKEVVENAEL 251 (539)
Q Consensus 239 ~~~~~~~~~~A~~ 251 (539)
.+++.+++++|.+
T Consensus 338 ~~~~~~~l~~a~~ 350 (407)
T 2au3_A 338 KEELRRLINSSGE 350 (407)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999874
No 11
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=99.94 E-value=1.8e-27 Score=233.53 Aligned_cols=191 Identities=21% Similarity=0.335 Sum_probs=149.0
Q ss_pred hhcccccCCCCCCcHHHHHHHHhcCCCHHHHHHcCcccccCC------------------------------------ce
Q 009230 36 REITEDSLELEPLGNELRAYFAERLISAETLRRNRVMQKRHG------------------------------------HE 79 (539)
Q Consensus 36 ~~~~~~~~~~~p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~------------------------------------~~ 79 (539)
..+....+.-.|....+++||.+|||++++++.|++++...+ .+
T Consensus 16 ~~~y~~~L~~~~~g~~a~~YL~~Rgl~~e~i~~f~lGyap~~~~~l~~~l~~~g~~~~~l~~~GL~~~~~~g~~~yd~Fr 95 (329)
T 4edg_A 16 QEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFR 95 (329)
T ss_dssp HHHHHHHHHHSSTTHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHHHTTCCHHHHHHTTSEEEETTTTEEEESCC
T ss_pred HHHHHHHHccCcccHHHHHHHHHcCCCHHHHHhCCeeeccCcHHHHHHHHHHCCCCHHHHHHCCCeEECCCCCccccccC
Confidence 333333333345666799999999999999999988543211 13
Q ss_pred eEEEEeEe-eCCEEEEEEeecC---CCcccccC-----CCCCccccccccC----CCCcEEEEechhhHHHHHHhCCCce
Q 009230 80 VVIAFPYW-RNGKLVNCKYRDF---NKKFWQEK-----DTEKVFYGLDDIE----GESDIIIVEGEMDKLSMEEAGFLNC 146 (539)
Q Consensus 80 ~~i~fP~~-~~G~~~~~~~R~~---~~~~~~~~-----~~~~~l~g~~~~~----~~~~v~i~EG~~Dalsl~~~g~~~~ 146 (539)
++|+||++ ..|++++|.+|.+ .+||.+++ +++..|||++... +.++|+||||++|+||++|+|+.++
T Consensus 96 ~Ri~fPI~d~~G~vigF~gR~l~~~~pKYlNspet~~f~K~~~Lygl~~a~~~i~~~~~vivvEG~~Dvial~q~Gi~na 175 (329)
T 4edg_A 96 NRIMFPLKNAQGRIVGYSGRTYTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKLDEIVLLEGFMDVIKSDTAGLKNV 175 (329)
T ss_dssp SEEEEEEECTTSCEEEEEEECSSSCSSSEEECCCCSSCCTTTCCBTHHHHHHHHHHHTCEEEESCHHHHHHHHHHTCCSE
T ss_pred CEEEEEEECCCCCEEEEEeEECCCCCCeEeCCCCcccccccchhccHHHHHHHhccCCcEEEEecHHHHHHHHHcCCCeE
Confidence 69999988 7899999999998 37888866 3577899998764 4678999999999999999999998
Q ss_pred EEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHHHHHHHhc--CCceEEEecCCCCC
Q 009230 147 VSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARRVG--RERCWRVRWPKKND 223 (539)
Q Consensus 147 v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~~~~~~l~--~~~~~~~~~p~~~~ 223 (539)
|+. .|++- .. .++..|.+ .++||+|+|+|+||++|+.++.+.|. +..++++.+|
T Consensus 176 VA~-lGTal-------t~-----------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~~lP---- 232 (329)
T 4edg_A 176 VAT-MGTQL-------SD-----------EHITFIRKLTSNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLP---- 232 (329)
T ss_dssp EEC-SSSCC-------CH-----------HHHHHHHHHCSEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEECCCC----
T ss_pred EEC-CccCC-------CH-----------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEEECC----
Confidence 885 45532 11 12445555 47999999999999999999999884 3467888887
Q ss_pred CCCCCChHHHHHhcCcchHHHHH-Hhccc
Q 009230 224 VDHFKDANEVLMYLGPGALKEVV-ENAEL 251 (539)
Q Consensus 224 ~~~~kD~nd~l~~~g~~~~~~~~-~~A~~ 251 (539)
.+|||||+++++|.+++.+++ +++.+
T Consensus 233 --~gkDpdd~l~~~G~~~~~~~i~~~~~~ 259 (329)
T 4edg_A 233 --SGMDPDEYIGKYGNDAFTTFVKNDKKS 259 (329)
T ss_dssp --TTCCHHHHHHHHCHHHHHHHHHHCCEE
T ss_pred --CCCCHHHHHHHhCHHHHHHHHHhcCCC
Confidence 579999999999999999985 55654
No 12
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=99.94 E-value=1.3e-26 Score=229.21 Aligned_cols=180 Identities=21% Similarity=0.320 Sum_probs=144.1
Q ss_pred CCcHHHHHHHHhcCCCHHHHHHcCcccccCC-----------------------------------ceeEEEEeEe-eCC
Q 009230 47 PLGNELRAYFAERLISAETLRRNRVMQKRHG-----------------------------------HEVVIAFPYW-RNG 90 (539)
Q Consensus 47 p~~~~~~~Yl~~Rgi~~~~~~~~~~~~~~~~-----------------------------------~~~~i~fP~~-~~G 90 (539)
|....+.+||.+|||++++++.|++++...+ ..++|+||+. ..|
T Consensus 39 ~~~~~a~~YL~~RGls~e~i~~f~lGyap~~~~~L~~~l~~~g~~~~~l~~~GL~~~~~~g~~yd~Fr~Ri~fPI~d~~G 118 (338)
T 1dd9_A 39 PVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRG 118 (338)
T ss_dssp GGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTTSEEEC---CEEESCCSEEEEEEECTTS
T ss_pred CccHHHHHHHHHcCCCHHHHHHcceeeccccHHHHHHHHHHcCCCHHHHHHCCCeeecCCCccccccCCEEEEEEECCCC
Confidence 5567799999999999999999998643211 1358999988 789
Q ss_pred EEEEEEeecC---CCcccccCC-----CCCccccccc----cCCCCcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCC
Q 009230 91 KLVNCKYRDF---NKKFWQEKD-----TEKVFYGLDD----IEGESDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVS 158 (539)
Q Consensus 91 ~~~~~~~R~~---~~~~~~~~~-----~~~~l~g~~~----~~~~~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~ 158 (539)
++++|.+|.+ .+||.+++. +...+||++. +.+.++|+||||++|+||++|+|+.++|++. |++.
T Consensus 119 ~vigf~gR~l~~~~pKYlnspet~if~K~~~Lygl~~A~~~i~~~~~viIvEG~~Dvlsl~q~G~~~aVA~l-Gtal--- 194 (338)
T 1dd9_A 119 RVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASL-GTST--- 194 (338)
T ss_dssp CEEEEEEEESSSCSCSEEECCCCSSCCTTTCCBTHHHHHHTCSSCSCEEEESSHHHHHHHHHTTCCCEEECC-C-CC---
T ss_pred cEEEEEEEeCCCCCCceecCCCCcccccCccccCccHHHHhhccCCeEEEEechHhHHHHHHcCCCcEEEeC-cccc---
Confidence 9999999998 367887663 5678999875 3457899999999999999999999888854 5542
Q ss_pred CCCCCChhhhhhhHHHHhHHHHhcc-CCEEEEEecCCccchHHHHHHHHH---hc--CCceEEEecCCCCCCCCCCChHH
Q 009230 159 KKNVPSEEQDTKYQYLWNCKMYLKQ-ASRIILATDGDPPGQALAEELARR---VG--RERCWRVRWPKKNDVDHFKDANE 232 (539)
Q Consensus 159 ~~~l~~~~~~~~~~~l~~~~~~l~~-~~~ivl~~DnD~~G~~~~~~~~~~---l~--~~~~~~~~~p~~~~~~~~kD~nd 232 (539)
+. .++..|.+ .++||||+|||+||++|+.++.+. +. +..++++.+| .+|||||
T Consensus 195 ----t~-----------~~~~~L~r~~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~lP------~gkDpdd 253 (338)
T 1dd9_A 195 ----TA-----------DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLP------DGEDPDT 253 (338)
T ss_dssp ----CH-----------HHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEEEC------TTCCHHH
T ss_pred ----CH-----------HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEecCC------CCCChHH
Confidence 11 12344543 489999999999999999999987 42 3467888888 5899999
Q ss_pred HHHhcCcchHHHHHHhccc
Q 009230 233 VLMYLGPGALKEVVENAEL 251 (539)
Q Consensus 233 ~l~~~g~~~~~~~~~~A~~ 251 (539)
+++++|.+++.+++++|.+
T Consensus 254 ~l~~~G~~~~~~~l~~a~~ 272 (338)
T 1dd9_A 254 LVRKEGKEAFEARMEQAMP 272 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEE
T ss_pred HHHHhcHHHHHHHHHcCCC
Confidence 9999999999999988875
No 13
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.89 E-value=7.8e-23 Score=205.77 Aligned_cols=223 Identities=13% Similarity=0.120 Sum_probs=156.7
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....++|||++.||.+++ |++|++++|+|+||+|||+|+++++.+++.. |.+|+||++|++..++. +...|+
T Consensus 50 ~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~~----a~~~g~ 124 (366)
T 1xp8_A 50 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPVY----ARALGV 124 (366)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTC
T ss_pred ccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHHH----HHHcCC
Confidence 456789999999999984 9999999999999999999999999999885 89999999999877653 222344
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC-CC--
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP-VS-- 429 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~-~~-- 429 (539)
+.. .+++. ...+.+++.+.++.++...++++||||++..+..... .+
T Consensus 125 d~~-------------------------~l~i~-----~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~ 174 (366)
T 1xp8_A 125 NTD-------------------------ELLVS-----QPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDM 174 (366)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC----
T ss_pred CHH-------------------------Hceee-----cCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcccccccccc
Confidence 321 12222 2346788888888887778899999997777653111 00
Q ss_pred -C----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC-C-CCC
Q 009230 430 -Q----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD-P-EAG 501 (539)
Q Consensus 430 -~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~-~-~~~ 501 (539)
. .....+.++++.|+.+|+++||+||+++| +++.....+ .| ....|+..+++.||+++.|+|.+. . +..
T Consensus 175 gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg-~p--~~~~gg~al~~~a~~rl~L~r~~~~~k~~~ 251 (366)
T 1xp8_A 175 GDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYG-NP--ETTTGGRALKFYASVRLDVRKIGQPTKVGN 251 (366)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC------------------CHHHHHHHCSEEEEEEEESCCC----
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccC-Cc--cccCCcchhhheeeEEEEEEecchhcccCc
Confidence 0 12235678999999999999999999999 665543211 11 112468899999999999999763 1 111
Q ss_pred --CCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceec
Q 009230 502 --PIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYM 536 (539)
Q Consensus 502 --~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~ 536 (539)
..+.+++.|.|||+++.+....+.+.|+..-.+|.
T Consensus 252 ~~~g~~~~v~v~Knr~~p~~~~~~f~i~~~~Gi~~~~ 288 (366)
T 1xp8_A 252 DAVANTVKIKTVKNKVAAPFKEVELALVYGKGFDQLS 288 (366)
T ss_dssp --CEEEEEEEEEEESSSCCCCEEEEEEETTTEECHHH
T ss_pred cccCCEEEEEEEcCCCCCCCceEEEEEEeCCCcccch
Confidence 12468999999999987655556666665544443
No 14
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.89 E-value=2e-22 Score=201.46 Aligned_cols=237 Identities=12% Similarity=0.124 Sum_probs=164.9
Q ss_pred chHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHH
Q 009230 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDAL 317 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~l 317 (539)
+.+.+++..|....+.+..+..++.+. .....+++||++.||.++ | +++|++++|+|+||+|||+|++++
T Consensus 47 ~~a~~~i~~a~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 47 KAAAKMIMGARDLCDLGFKSGIDLLKQ--------RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp HHHHHHHHHHHHHTTCSCCCTHHHHHH--------HTTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcCCcHHHHHHH--------hccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHH
Confidence 456666776665444556665665431 134578999999999999 4 999999999999999999999999
Q ss_pred HHHHHHh-----------cC----CeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhc
Q 009230 318 ICNINEH-----------AG----WKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSN 380 (539)
Q Consensus 318 a~~~a~~-----------~g----~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~ 380 (539)
+.+++.. .| .+|+||++|++ ++++..++.. .+++ .+++ + +
T Consensus 119 a~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~--~g~~--------------~~~~------~-~ 175 (322)
T 2i1q_A 119 CVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH--AGID--------------GQTV------L-D 175 (322)
T ss_dssp HHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH--HTCC--------------HHHH------H-H
T ss_pred HHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH--cCCC--------------HHHH------h-c
Confidence 9886432 24 79999999997 8888776532 3332 2211 1 2
Q ss_pred cceeEeecCCCCCCHH---HHHHHHHHHHHH-cCCcEEEEccccccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCc
Q 009230 381 TFSLIRCENDSLPSIK---WVLDLAKAAVLR-HGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHAC 452 (539)
Q Consensus 381 ~~~~i~~~~~~~~~~~---~i~~~i~~~~~~-~~~~~vvID~~~~l~~~~~~--~~--~~~~~~~~~~~~Lk~lA~~~~i 452 (539)
+.++.. ..+.+ ++...+..++.+ .++++||||++..+...... +. ++...+.+++..|+.+|+++|+
T Consensus 176 ~l~~~~-----~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 176 NTFVAR-----AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp TEEEEE-----CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEe-----CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233331 22333 455666666776 78999999988877542110 11 1234678999999999999999
Q ss_pred EEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 453 HVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 453 ~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
+||+++| +++.....+ ......|+..+++.+|++|.|++.+. ....+.+.|+|+++.|.+
T Consensus 251 ~vi~~nq~~~~~~~~~g---~~~~~~g~~~~~~~~d~~i~l~~~~~------~~r~~~v~k~~~~p~~~~ 311 (322)
T 2i1q_A 251 VVLVTNQVSAKPDAFFG---MAEQAIGGHIVGHAATFRFFVRKGKG------DKRVAKLYDSPHLPDAEA 311 (322)
T ss_dssp EEEEEECEECC----------CCEESSHHHHHHHCSEEEEEEECST------TEEEEEEEECSSSCCEEE
T ss_pred EEEEECceeecCCCCCC---CCcCCCCcHHHHhcCcEEEEEEecCC------CeEEEEEEECCCCCCeEE
Confidence 9999999 665432110 11234577789999999999998752 245899999999988764
No 15
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.89 E-value=3.1e-22 Score=199.89 Aligned_cols=236 Identities=15% Similarity=0.119 Sum_probs=143.7
Q ss_pred chHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHH
Q 009230 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 317 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~l 317 (539)
+.+..+++.|....+.+..+..++.+. .....+++||++.||.+++ +++|++++|+|+||+|||+|++++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 56 STAQKIIKEARDALDIRFKTALEVKKE--------RMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp ----------------CCCCHHHHHHH--------HCSCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhhhhh--------hccCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHH
Confidence 455566666655444555555555321 1346789999999999994 999999999999999999999999
Q ss_pred HHHHHHhc-----CCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCC
Q 009230 318 ICNINEHA-----GWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390 (539)
Q Consensus 318 a~~~a~~~-----g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~ 390 (539)
+.+++... +.+|+||++|++ ++++..++.. .+++ .+++ + ++.++..
T Consensus 128 a~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~--~g~~--------------~~~~------~-~~l~~~~---- 180 (324)
T 2z43_A 128 SVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA--LGLD--------------IDNV------M-NNIYYIR---- 180 (324)
T ss_dssp HHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH--TTCC--------------HHHH------H-HTEEEEE----
T ss_pred HHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH--hCCC--------------HHHH------h-ccEEEEe----
Confidence 99876532 679999999997 7877766432 2322 2221 1 2333332
Q ss_pred CCCCHH---HHHHHHHHHHHH-cCCcEEEEccccccccCCC--CCC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 391 SLPSIK---WVLDLAKAAVLR-HGVRGLVIDPYNELDHQRP--VSQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 391 ~~~~~~---~i~~~i~~~~~~-~~~~~vvID~~~~l~~~~~--~~~--~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
..+.+ ++...+..++.+ .++++||||++..+..... .+. ++...+.++++.|+.+|+++|++||+++| ++
T Consensus 181 -~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 181 -AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred -CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 22333 456667777777 7899999998887764211 011 12346789999999999999999999999 65
Q ss_pred CCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCcce
Q 009230 462 QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 462 ~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~ 520 (539)
+..... .......|+..+++.+|++|.|++.+. ....+.+.|+|+++.|.
T Consensus 260 ~~~~~~---~~~~~~~gg~~l~~~~d~~l~l~r~~~------~~r~~~v~k~~~~p~~~ 309 (324)
T 2z43_A 260 RPDMFY---GDPTVAVGGHTLYHVPGIRIQLKKSRG------NRRIARVVDAPHLPEGE 309 (324)
T ss_dssp -------------------------CEEEEEEECST------TEEEEEEEECSSSCCEE
T ss_pred cCCCcC---CCCCCCCchHHHHhhCcEEEEEEEcCC------CeEEEEEEECCCCCceE
Confidence 543211 011123567789999999999998652 24689999999998775
No 16
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.88 E-value=5.6e-22 Score=199.37 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=152.2
Q ss_pred chHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHH
Q 009230 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 317 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~l 317 (539)
+.+.++++.|......+..+..++.+. .....+++||++.||.+++ +++|++++|+|+||+|||+|++++
T Consensus 71 ~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 71 AKVDKIKEAANKLIEPGFLTAFEYSEK--------RKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp ---------------CCSEEHHHHHHH--------GGGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCcHHHHHhh--------hcccceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345555666654444445544444321 1235689999999999994 999999999999999999999999
Q ss_pred HHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCC
Q 009230 318 ICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390 (539)
Q Consensus 318 a~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~ 390 (539)
+.+++.. .+.+|+||++|++ ++++..++.. .+++ .++ + +. ++++.. ..
T Consensus 143 a~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~--~g~~--------------~~~---~---l~-~l~~~~--~~ 197 (343)
T 1v5w_A 143 CVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR--FNVD--------------HDA---V---LD-NVLYAR--AY 197 (343)
T ss_dssp HHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH--TTCC--------------HHH---H---HH-TEEEEE--CC
T ss_pred HHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH--cCCC--------------HHH---H---Hh-ceeEee--cC
Confidence 9987652 2789999999996 7777766532 2322 211 1 22 233332 12
Q ss_pred CCCCHHHHHHHHHHHHHH--cCCcEEEEccccccccCCCC--CC--CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCC
Q 009230 391 SLPSIKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPV--SQ--TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQL 463 (539)
Q Consensus 391 ~~~~~~~i~~~i~~~~~~--~~~~~vvID~~~~l~~~~~~--~~--~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~ 463 (539)
....+.++...++.++.+ .++++||||++..+....-. +. ++...+.++++.|+.+|+++|++||+++| +++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~ 277 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADP 277 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecC
Confidence 223344566667777777 78999999988877643111 11 12345789999999999999999999999 6655
Q ss_pred CCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCccee
Q 009230 464 HNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 464 ~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
..+..-..+...-.|+..+++.||++|.|++.+. ....+.|.|+|+++.|.+
T Consensus 278 ~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r~~~------~~r~~~v~K~r~~p~~~~ 329 (343)
T 1v5w_A 278 GATMTFQADPKKPIGGHILAHASTTRISLRKGRG------ELRIAKIYDSPEMPENEA 329 (343)
T ss_dssp ---------------CCTTTTSSSEEEEEEESST------TEEEEEEEECTTCCSSCE
T ss_pred CCccccCCCCCcCCchHHHHHhCCEEEEEEEcCC------CEEEEEEEECCCCCCeeE
Confidence 3310000000112356689999999999998652 256899999999988763
No 17
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.88 E-value=2e-21 Score=186.43 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=147.1
Q ss_pred cccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc
Q 009230 279 FGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 279 ~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~ 356 (539)
.+++||++.||+++ + +++|++++|+|+||+|||+|+++++.+.+.. |.+|+|+++|++..++..|+. ..|.++..
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~~~~~~~--~~g~~~~~ 79 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQVRQNMA--QFGWDVKP 79 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHHHHHHHH--TTTCCCHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHHHHHHHH--HcCCCHHH
Confidence 47999999999997 4 9999999999999999999999999999885 899999999999998888874 24444322
Q ss_pred cccCCCCCCCCHHH-HHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHH
Q 009230 357 ANYGGSAERMTVEE-FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435 (539)
Q Consensus 357 i~~~~~~~~l~~~~-~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~ 435 (539)
+...+ .+...+ .......+.....++ . ....+++++...+..++.+.++++||||++..+... +. ..
T Consensus 80 ~~~~~---~l~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-----~~-~~ 147 (247)
T 2dr3_A 80 YEEKG---MFAMVDAFTAGIGKSKEYEKYI-V--HDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-----KP-AM 147 (247)
T ss_dssp HHHHT---SEEEEECSTTTTCC--CCCSCB-C--SCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-----CG-GG
T ss_pred HhhCC---cEEEEecchhhccccccccccc-c--cCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-----CH-HH
Confidence 11000 000000 000000000001111 0 233567888888888888889999999988877521 11 13
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEee
Q 009230 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514 (539)
Q Consensus 436 ~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R 514 (539)
..+++..|.++++++|++|++++| ++... +++++ .+++.||.|+.|++.+... .....+.|.|+|
T Consensus 148 ~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~----------~~~~~-~~~~~~D~vi~L~~~~~~~---~~~r~l~v~K~R 213 (247)
T 2dr3_A 148 ARSIILQLKRVLAGTGCTSIFVSQVSVGER----------GFGGP-GVEHGVDGIIRLDLDEIDG---ELKRSLIVWKMR 213 (247)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC--------------CCC-C-CHHHHSSEEEEEEEEEETT---EEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHCCCeEEEEecCCCCcc----------ccccc-ccceeEEEEEEEEEEccCC---eeEEEEEEEECC
Confidence 456778889999999999999999 55321 11222 4789999999999875421 236789999999
Q ss_pred CCCcce
Q 009230 515 NKVVGT 520 (539)
Q Consensus 515 ~g~~G~ 520 (539)
+++.+.
T Consensus 214 ~~~~~~ 219 (247)
T 2dr3_A 214 GTSHSM 219 (247)
T ss_dssp TSCCCC
T ss_pred CCCCCC
Confidence 998763
No 18
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.88 E-value=5.4e-22 Score=229.90 Aligned_cols=214 Identities=15% Similarity=0.112 Sum_probs=162.0
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....+++||++.||++++ +++|++++|+|+||+|||+|+++++.+++.+ |.+|+|||+||+..++. +...|+
T Consensus 708 ~~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~-g~~VlyiS~Ees~~ql~----A~~lGv 782 (1706)
T 3cmw_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 782 (1706)
T ss_dssp GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH----HHHTTC
T ss_pred ccccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHc-CCCeEEEeccchHHHHH----HHHcCC
Confidence 356789999999999994 9999999999999999999999999999985 89999999999988764 444454
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc-C---CCC
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q---RPV 428 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~-~---~~~ 428 (539)
+.. .+++. ...+++++.+.+++++.++++++||||++..+.. . ...
T Consensus 783 d~~-------------------------~L~i~-----~~~~leei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~ 832 (1706)
T 3cmw_A 783 DID-------------------------NLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 832 (1706)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCT
T ss_pred Chh-------------------------heEEe-----cCCcHHHHHHHHHHHHHccCCCEEEEechhhhcccccccccc
Confidence 432 12332 2337889999999988889999999996665542 1 011
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCC
Q 009230 429 SQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEA 500 (539)
Q Consensus 429 ~~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~ 500 (539)
+. .....+.+++..|+.+|+++|++||+++| ++......+ .|. .-.||+.+++.||+++.|+|++. .+.
T Consensus 833 G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G-dp~--~p~gs~~Leq~ADvvl~L~R~~~~~~g~~ 909 (1706)
T 3cmw_A 833 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPE--TTTGGNALKFYASVRLDIRRIGAVKEGEN 909 (1706)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS-CCE--EESSCSHHHHHEEEEEEEEEEEEEEETTE
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC-Ccc--ccCCcchhhheeeEEEEEEeccccccccc
Confidence 11 13345788899999999999999999999 776554332 221 12368999999999999998752 111
Q ss_pred CCCCcEEEEEEEeeCCCcceeeeEEEE
Q 009230 501 GPIDRVQVCVRKVRNKVVGTIGEAFLS 527 (539)
Q Consensus 501 ~~~~~~~l~i~K~R~g~~G~~~~~~l~ 527 (539)
...+.+.+.+.|||+|++|+.+.+.+.
T Consensus 910 ~~g~~r~l~V~KnR~gp~~~~~~F~I~ 936 (1706)
T 3cmw_A 910 VVGSETRVKVVKNKIAAPFKQAEFQIL 936 (1706)
T ss_dssp EEEEEEEEEEEEESSSCSCCEEEEEEE
T ss_pred ccCcEEEEEEEecCCCCCCceEEEEEE
Confidence 112368899999999999987655553
No 19
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.87 E-value=9.3e-21 Score=178.53 Aligned_cols=201 Identities=19% Similarity=0.189 Sum_probs=142.8
Q ss_pred ccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC--CHHHHHHHHHHHhhCCCcc
Q 009230 280 GISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN--KVREHARKLLEKHIKKPFF 355 (539)
Q Consensus 280 gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~--~~~~~~~r~~~~~~~~~~~ 355 (539)
.++||++.||+++ | +++|++++|.|+||+|||||+.+++. . .+.+|+|++.|+ +..++...+ . ..+
T Consensus 1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~~~~~~~~~~~~~~-~-~~~---- 70 (220)
T 2cvh_A 1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L-SGKKVAYVDTEGGFSPERLVQMA-E-TRG---- 70 (220)
T ss_dssp CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H-HCSEEEEEESSCCCCHHHHHHHH-H-TTT----
T ss_pred CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H-cCCcEEEEECCCCCCHHHHHHHH-H-hcC----
Confidence 3799999999999 4 99999999999999999999999998 3 389999999998 776654422 1 111
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHH
Q 009230 356 EANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEY 435 (539)
Q Consensus 356 ~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~ 435 (539)
+..+++ + +...+. ...+......+.+.++.++.+ ++++||||+...++.......++...
T Consensus 71 ----------~~~~~~------~-~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 71 ----------LNPEEA------L-SRFILF--TPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp ----------CCHHHH------H-HHEEEE--CCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred ----------CChHHH------h-hcEEEE--ecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 222221 1 122222 112222233445555555444 79999999888776432212344567
Q ss_pred HHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEee
Q 009230 436 VSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVR 514 (539)
Q Consensus 436 ~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R 514 (539)
+.++++.|+.++++++++||+++| ++.... .+.+| .+|..+++.||.++.|++.+.. +...+.|.|+|
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~-~~~~p-----~~~~~~~~~~d~vi~l~~~~~~-----~~r~l~v~K~r 199 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHFDSRT-EMTKP-----VAEQTLGYRCKDILRLDKLPKP-----GLRVAVLERHR 199 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSSSCTT-SSCCS-----CCCHHHHHTSSEEEEEEECSST-----TEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEEcCCC-Ccccc-----CCCcceeecCcEEEEEEEecCC-----CEEEEEEEeCC
Confidence 788999999999999999999999 654432 12233 4567899999999999988631 36789999999
Q ss_pred CCCccee
Q 009230 515 NKVVGTI 521 (539)
Q Consensus 515 ~g~~G~~ 521 (539)
+++.|..
T Consensus 200 ~~~~~~~ 206 (220)
T 2cvh_A 200 FRPEGLM 206 (220)
T ss_dssp SSCTTCE
T ss_pred CCCCCce
Confidence 9988763
No 20
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.87 E-value=5.6e-22 Score=231.75 Aligned_cols=222 Identities=16% Similarity=0.124 Sum_probs=163.9
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....++|||++.||.+++ |++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+||+..++. +...|+
T Consensus 359 ~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~-G~~vlyis~E~s~~~~~----a~~lGv 433 (2050)
T 3cmu_A 359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 433 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH----HHHTTC
T ss_pred cCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCHHHHH----HHHcCC
Confidence 346789999999999994 9999999999999999999999999999875 89999999999988764 333454
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc-CC---CC
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-QR---PV 428 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~-~~---~~ 428 (539)
+.. + +++. ...+++++.+.++.++.+.++++||||++..+.. .. ..
T Consensus 434 d~~-------------------------~-L~I~----~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~ 483 (2050)
T 3cmu_A 434 DID-------------------------N-LLCS----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 483 (2050)
T ss_dssp CTT-------------------------T-CEEE----CCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT
T ss_pred CHH-------------------------H-eEEe----CCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhccccccccc
Confidence 321 1 2231 2346788999999888889999999997766653 10 00
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCC
Q 009230 429 SQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEA 500 (539)
Q Consensus 429 ~~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~ 500 (539)
++ .....+.+.++.|+.+|+++||+||+++| +++...+.+ .| ..-.|+.++++.||++|.|+|.+. .+.
T Consensus 484 Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g-~p--~~psGg~ale~~ADv~l~L~R~~~~~~g~~ 560 (2050)
T 3cmu_A 484 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NP--ETTTGGNALKFYASVRLDIRRIGAVKEGEN 560 (2050)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS-CC--EECSSHHHHHHHEEEEEEEEEEEEEEETTE
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC-CC--cCCCCcchhhhhCCEEEEEEecccccCCcc
Confidence 11 13345677888888889999999999999 766543311 11 122588899999999999999752 111
Q ss_pred CCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCcee
Q 009230 501 GPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEY 535 (539)
Q Consensus 501 ~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf 535 (539)
...+.+++.+.|||+|+.|..+.+.+.|+..-.+|
T Consensus 561 ~~g~~~~v~V~KnR~gp~g~~~~f~I~~~~Gi~~~ 595 (2050)
T 3cmu_A 561 VVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFY 595 (2050)
T ss_dssp EEEEEEEEEEEEESSSCSCCEEEEEEETTTEECHH
T ss_pred ccCcEEEEEEEecCCCCCCceEEEEEEeCCCcccc
Confidence 11135789999999999998766666555444333
No 21
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.87 E-value=4.8e-21 Score=192.22 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=144.6
Q ss_pred CCccccccCchhhhhhh--c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~--~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....++|||++.||.++ | |++|++++|+|+||+|||+|+++++.+++.+ |.+|+||++|++..... +...|+
T Consensus 39 ~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~~----a~~~g~ 113 (356)
T 1u94_A 39 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 113 (356)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTC
T ss_pred ccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHHH----HHHcCC
Confidence 34678999999999999 4 9999999999999999999999999999885 89999999999876542 222343
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC---CC-
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR---PV- 428 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~---~~- 428 (539)
+.. .++++ ...+.+++.+.++.++...++++||||++..+.... ..
T Consensus 114 ~~~-------------------------~l~i~-----~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~ 163 (356)
T 1u94_A 114 DID-------------------------NLLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 163 (356)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred Chh-------------------------heeee-----CCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhcccc
Confidence 321 12222 223567788888888888899999999777665311 00
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCC
Q 009230 429 SQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEA 500 (539)
Q Consensus 429 ~~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~ 500 (539)
+. .....+.++++.|+.+++++||+||+++| +++...+.+ .|. .-.|+..+++.||+++.|+|.+. .+.
T Consensus 164 g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg-~~~--~~~gG~~l~~~advrl~l~r~~~~k~g~~ 240 (356)
T 1u94_A 164 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NPE--TTTGGNALKFYASVRLDIRRIGAVKEGEN 240 (356)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC-----------------CTTCSHHHHHCSEEEEEEEEEEEESSSS
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC-CCc--ccCCCcceeeeccEEEEEEEeeeeccCcc
Confidence 01 11235678899999999999999999999 665433211 111 12345689999999999998652 111
Q ss_pred CCCCcEEEEEEEeeCCCcc
Q 009230 501 GPIDRVQVCVRKVRNKVVG 519 (539)
Q Consensus 501 ~~~~~~~l~i~K~R~g~~G 519 (539)
...+.+.+.|.|+|+++..
T Consensus 241 ~~g~~~~~~i~K~r~~p~~ 259 (356)
T 1u94_A 241 VVGSETRVKVVKNKIAAPF 259 (356)
T ss_dssp EEEEEEEEEEEEESSBCSC
T ss_pred ccCcEEEEEECCCccCCCC
Confidence 0124688999999999844
No 22
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.87 E-value=2.1e-21 Score=224.99 Aligned_cols=212 Identities=16% Similarity=0.123 Sum_probs=159.2
Q ss_pred CccccccCchhhhhhh--c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 277 DEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~--~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
...++|||++.||.++ | |++|++++|+|+||+|||+|++|++.+++.+ |.+|+|||+||+..++. +...|++
T Consensus 360 ~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-G~~vlyis~E~s~~~~~----a~~lGvd 434 (1706)
T 3cmw_A 360 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGVD 434 (1706)
T ss_dssp SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECTTSCCCHHH----HHHTTCC
T ss_pred cCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEccCchHHHH----HHHcCCC
Confidence 4578999999999999 4 9999999999999999999999999999985 99999999999988763 3334554
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC----CCC
Q 009230 354 FFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR----PVS 429 (539)
Q Consensus 354 ~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~----~~~ 429 (539)
... ++++ ...+.+++.+.++.++.+.++++||||++..+.... ..+
T Consensus 435 ~~~-------------------------L~i~-----~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g 484 (1706)
T 3cmw_A 435 IDN-------------------------LLCS-----QPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 484 (1706)
T ss_dssp GGG-------------------------CEEE-----CCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTT
T ss_pred HHH-------------------------eEEc-----CCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccc
Confidence 321 1222 123578888888888888999999999777765310 001
Q ss_pred C----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCC
Q 009230 430 Q----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAG 501 (539)
Q Consensus 430 ~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~ 501 (539)
. .....+.++++.|+.+|+++||+||+++| +++...+.+. + ..-.|+..+++.||++|.|+|.+. .+..
T Consensus 485 ~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~-~--~~p~gg~ale~~ADv~L~L~R~~~~~~g~~~ 561 (1706)
T 3cmw_A 485 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN-P--ETTTGGNALKFYASVRLDIRRIGAVKEGENV 561 (1706)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSC-C--EEESSCSHHHHHEEEEEEEEEEEEEEETTEE
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCC-C--ccCCCCcceeeeCCEEEEEEeccccccCccc
Confidence 1 23345788999999999999999999999 7765433111 1 112478899999999999999752 1111
Q ss_pred CCCcEEEEEEEeeCCCcceeeeEEE
Q 009230 502 PIDRVQVCVRKVRNKVVGTIGEAFL 526 (539)
Q Consensus 502 ~~~~~~l~i~K~R~g~~G~~~~~~l 526 (539)
..+.+++.|.|||+++.+....+.+
T Consensus 562 ~~~~~~l~V~KnR~gp~~~~~~F~I 586 (1706)
T 3cmw_A 562 VGSETRVKVVKNKIAAPFKQAEFQI 586 (1706)
T ss_dssp EEEEEEEEEEEESSSCSCCEEEEEE
T ss_pred cCcEEEEEEEecCCCCCCCeEEEEE
Confidence 1235789999999999988655544
No 23
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.85 E-value=9.4e-21 Score=192.70 Aligned_cols=242 Identities=14% Similarity=0.138 Sum_probs=152.9
Q ss_pred chHHHHHHhccccCccccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHH
Q 009230 240 GALKEVVENAELYPIMGLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDAL 317 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~l 317 (539)
..+.+++..|..+...+..+..++.+.- ....+++||++.||++++ +++|+++.|+|+||+|||||++++
T Consensus 127 ~~~~~i~~~a~~~~~~~~~ta~~l~~~~--------~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 127 AKADKLLNEAARLVPMGFVTAADFHMRR--------SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTL 198 (400)
T ss_dssp HHHHHHHHHHHHHSCCSCCCHHHHHHHH--------HTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHhhh--------ccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHH
Confidence 4566667766655445555544443211 345689999999999994 999999999999999999999999
Q ss_pred HHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCC
Q 009230 318 ICNINEH-----AGWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEND 390 (539)
Q Consensus 318 a~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~ 390 (539)
+.+.+.. .+.+++||+.|++ ..++.. ++...++. .+. + + +...+... .
T Consensus 199 a~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~--~a~~~gl~--------------~~~---v---l-eni~~~~~--~ 253 (400)
T 3lda_A 199 AVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS--IAQRFGLD--------------PDD---A---L-NNVAYARA--Y 253 (400)
T ss_dssp HHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH--HHHHTTCC--------------HHH---H---H-HTEEEEEC--C
T ss_pred HHHhccCcccCCCCCcEEEEeCCCccCHHHHHH--HHHHcCCC--------------hHh---H---h-hcEEEecc--C
Confidence 9887652 2578999999986 444433 23333332 111 1 1 12233211 1
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCC----CCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCC
Q 009230 391 SLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVS----QTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHN 465 (539)
Q Consensus 391 ~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~----~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~ 465 (539)
......+++..+..++...++++||||++..+....-.+ ..+...+.+++..|+.+++++|++||+++| .+..+.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g 333 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDG 333 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCc
Confidence 111122344455556667789999999888876532111 112334578999999999999999999999 433322
Q ss_pred CCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCcce
Q 009230 466 WVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 466 ~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~ 520 (539)
...-........|+..+++.+|++|.|++.+. ....+.+.|+|+++.++
T Consensus 334 ~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~g------~~R~l~v~K~R~~p~~e 382 (400)
T 3lda_A 334 GMAFNPDPKKPIGGNIMAYSSTTRLGFKKGKG------CQRLCKVVDSPCLPEAE 382 (400)
T ss_dssp --------------CHHHHHCSEEEEEEECST------TEEEEEEEECSSSCSCE
T ss_pred cccccCCCccCCchhHHHHhcceEEEEEecCC------CcEEEEEEcCCCCCCCc
Confidence 10000011123467889999999999998642 24789999999999887
No 24
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.84 E-value=5.8e-20 Score=179.80 Aligned_cols=232 Identities=14% Similarity=0.128 Sum_probs=143.7
Q ss_pred cccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh---------cCCeEEEEeCCCCHHHHHHHHHHH
Q 009230 279 FGISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEH---------AGWKFVLCSMENKVREHARKLLEK 348 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~---------~g~~vl~~s~E~~~~~~~~r~~~~ 348 (539)
..++||++.||.+++ +++|++++|.|++|+|||||+++++..++.. .+.+|+|+++|++..++..|+.+.
T Consensus 11 ~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~~ 90 (279)
T 1nlf_A 11 EAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90 (279)
T ss_dssp HHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHHH
T ss_pred HHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHHH
Confidence 458899999999998 9999999999999999999999999876541 136899999999998887776543
Q ss_pred hhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeec--CCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCC
Q 009230 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCE--NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQR 426 (539)
Q Consensus 349 ~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~--~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~ 426 (539)
. .. +.......+.+.+ .+.... .....+... ...++.++ .++++||||+...+....
T Consensus 91 g--~~------------~~~~~~~~~~~~l----~l~~~~~~~~~~ls~g~-~~~i~~l~--~~~~livlDe~~~~~~~d 149 (279)
T 1nlf_A 91 G--AH------------LSAEERQAVADGL----LIQPLIGSLPNIMAPEW-FDGLKRAA--EGRRLMVLDTLRRFHIEE 149 (279)
T ss_dssp H--TT------------SCHHHHHHHHHHE----EECCCTTSCCCTTSHHH-HHHHHHHH--TTCSEEEEECGGGGCCSC
T ss_pred H--hh------------cChhhhhhccCce----EEeecCCCCcccCCHHH-HHHHHHhc--CCCCEEEECCHHHhcCCC
Confidence 2 21 2222222222222 111000 011112222 33444433 369999999888765432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCC--------
Q 009230 427 PVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDP-------- 498 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~-------- 498 (539)
.+....+.++++.|+.++++.|++||+++|..+.....+..+..++.+||+.+...+..+..+.+..+.
T Consensus 150 ---~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~~~g~~~~~~~~~g~~~l~d~v~~~~~~~~~~~~~~~~~gi~ 226 (279)
T 1nlf_A 150 ---ENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAEAEEWGVD 226 (279)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEECCHHHHHHTTCC
T ss_pred ---cCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCCchhhhhccchhhhccchhhhhhccCCCHHHHHHhCCC
Confidence 233456788999999999999999999999333322223345567789999998766666666665421
Q ss_pred CCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCCCceecc
Q 009230 499 EAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRVTGEYMD 537 (539)
Q Consensus 499 ~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~~~rf~~ 537 (539)
+......+++.+.|+|+++.|... .+.++ ++|.|..
T Consensus 227 ~~~~~~~~~~~v~K~~~~~~~~~~--~~~~~-~~G~l~~ 262 (279)
T 1nlf_A 227 DDQRRFFVRFGVSKANYGAPFADR--WFRRH-DGGVLKP 262 (279)
T ss_dssp TTSGGGEEEEEEEECSSSSCCCCE--EEEEC-GGGCEEE
T ss_pred hhhcCcEEEeeeccccCCCCCCce--EEEEc-CCeeEec
Confidence 111123578999999999998752 45554 6777754
No 25
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=99.84 E-value=6.4e-20 Score=183.10 Aligned_cols=214 Identities=14% Similarity=0.095 Sum_probs=156.0
Q ss_pred ccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 278 EFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 278 ~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
...+|||++.||.+++ +++|++++|+|+||+|||||+++++..++.. |.+|+|++.|++..... +...+++.
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~-gg~VlyId~E~s~~~~r----a~rlgv~~ 113 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM-GGVAAFIDAEHALDPVY----AKNLGVDL 113 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHHTCCG
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEecccccchHH----HHHcCCch
Confidence 6789999999999984 9999999999999999999999999998875 88999999998866542 22224332
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc-C--CC-CCC
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q--RP-VSQ 430 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~-~--~~-~~~ 430 (539)
. ..++. ...+.+++...++.++...++++||||++..+.. . .+ .++
T Consensus 114 ~-------------------------~l~i~-----~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 114 K-------------------------SLLIS-----QPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp G-------------------------GCEEE-----CCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred h-------------------------hhhhh-----hccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 1 12222 2345777888888777778899999999888764 1 11 011
Q ss_pred ----CHHHHHHHHHHHHHHHHHHhCcEEEEEecCC-CCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCCCC
Q 009230 431 ----TETEYVSQMLTMVKRFAQHHACHVWFVAHPR-QLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEAGP 502 (539)
Q Consensus 431 ----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r-~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~~~ 502 (539)
.....+.++++.|+.+|++++++||+++|.+ +...-. .+.....|+..++..+|++|.|.+.+. .+...
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~f---g~p~~~~GG~~l~h~~~~rl~l~k~~~~k~g~~~~ 240 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMF---GSPETTTGGLALKFYATMRMEVRRGEPIKEGKDVI 240 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSS---CSCSSCTHHHHHHHHCSEEEEEEEEEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccccc---CCcccCCCcchhhhhCcEEEEEEeccccccCCccc
Confidence 1234577889999999999999999999953 332211 122356789999999999999998531 11001
Q ss_pred CCcEEEEEEEeeCCCcceeeeEEEEEe
Q 009230 503 IDRVQVCVRKVRNKVVGTIGEAFLSYN 529 (539)
Q Consensus 503 ~~~~~l~i~K~R~g~~G~~~~~~l~fd 529 (539)
.+.+.+.+.|||.++.+..+.+.+.|+
T Consensus 241 g~~~~vkvvKnr~~~~~~~~~f~i~~~ 267 (356)
T 3hr8_A 241 GNVISVKIVKNKVAPPFKTAQTYIIYG 267 (356)
T ss_dssp EEEEEEEEEEESSSCCCCEEEEEEETT
T ss_pred ccEEEEEEEeCCCCCCCceEEEEEeeC
Confidence 235788999999998888665555443
No 26
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.84 E-value=1.5e-19 Score=181.30 Aligned_cols=206 Identities=16% Similarity=0.108 Sum_probs=145.5
Q ss_pred CCccccccCchhhhhhhc---cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELYN---VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~---l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....+++||++.||.+++ +++|++++|+|+||+|||||+++++.+++.. |.+|+|+++|++..... +...|+
T Consensus 37 ~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~~----a~~lG~ 111 (349)
T 2zr9_A 37 QPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPEY----AKKLGV 111 (349)
T ss_dssp CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHHH----HHHTTC
T ss_pred ccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHHH----HHHcCC
Confidence 345789999999999984 9999999999999999999999999999885 89999999999866542 223344
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccC-C--CC-
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQ-R--PV- 428 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~-~--~~- 428 (539)
+.. .++++ ...+.+++.+.++.++...++++||||++..+... . +.
T Consensus 112 ~~~-------------------------~l~i~-----~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~ 161 (349)
T 2zr9_A 112 DTD-------------------------SLLVS-----QPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEM 161 (349)
T ss_dssp CGG-------------------------GCEEE-----CCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC-
T ss_pred CHH-------------------------HeEEe-----cCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccc
Confidence 321 12222 23357777777877777788999999988887621 0 00
Q ss_pred CC----CHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC---CCC
Q 009230 429 SQ----TETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD---PEA 500 (539)
Q Consensus 429 ~~----~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~---~~~ 500 (539)
++ .....+.+++..|+.+++++|++||+++| +++.....+ .| ..-.|+..+++.||.++.++|.+. .+.
T Consensus 162 gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~-~p--~~~~gg~~l~~~ad~~l~lrr~~~~k~g~~ 238 (349)
T 2zr9_A 162 GDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFG-SP--ETTTGGKALKFYASVRLDVRRIETLKDGTD 238 (349)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC--------------CCSSHHHHHHHCSEEEEEEEEEEECSSSS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC-CC--cccCCchHhhhccceEEEEEEeeeeecCcc
Confidence 01 11225678889999999999999999999 554432111 11 112467889999999999998642 111
Q ss_pred CCCCcEEEEEEEeeCCCcc
Q 009230 501 GPIDRVQVCVRKVRNKVVG 519 (539)
Q Consensus 501 ~~~~~~~l~i~K~R~g~~G 519 (539)
...+.+.+.|.|+|.++..
T Consensus 239 ~~g~~~~~~i~K~~~~p~~ 257 (349)
T 2zr9_A 239 AVGNRTRVKVVKNKVSPPF 257 (349)
T ss_dssp CCEEEEEEEEEEESSSCCC
T ss_pred ccCCEEEEEeCCCccCCCC
Confidence 1124678999999999844
No 27
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.83 E-value=1.8e-19 Score=172.47 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=132.5
Q ss_pred ccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEeCCCC--HHHHHHHHHHH
Q 009230 278 EFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMENK--VREHARKLLEK 348 (539)
Q Consensus 278 ~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s~E~~--~~~~~~r~~~~ 348 (539)
..+++||++.||+++ | +++|++++|.|+||+|||||+.+++.+++... +.+++|++.|++ +.++..++..
T Consensus 3 ~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~- 81 (243)
T 1n0w_A 3 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER- 81 (243)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH-
T ss_pred ceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH-
Confidence 357999999999999 4 99999999999999999999999998765421 679999999994 6655544322
Q ss_pred hhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHH---HHHHHHHHHHHcCCcEEEEccccccccC
Q 009230 349 HIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKW---VLDLAKAAVLRHGVRGLVIDPYNELDHQ 425 (539)
Q Consensus 349 ~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~---i~~~i~~~~~~~~~~~vvID~~~~l~~~ 425 (539)
.++ ..++ + + +...++. ..+.++ +...+..+....++++||||++..+...
T Consensus 82 -~g~--------------~~~~---~---~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 82 -YGL--------------SGSD---V---L-DNVAYAR-----AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp -TTC--------------CHHH---H---H-HTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred -cCC--------------CHHH---H---h-hCeEEEe-----cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 222 1211 1 1 2223321 123333 3344555666678999999988887643
Q ss_pred CCCC-C--C-HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCC
Q 009230 426 RPVS-Q--T-ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEA 500 (539)
Q Consensus 426 ~~~~-~--~-~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~ 500 (539)
.-++ . . +...+.+++..|+.+++++|++||+++| ++....+..-..+...-.|+..+++.||.++.|++.+.
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~~--- 211 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGRG--- 211 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECST---
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcCC---
Confidence 2111 0 1 1224778999999999999999999999 55443210000000112566789999999999998532
Q ss_pred CCCCcEEEEEEEeeCCCcce
Q 009230 501 GPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 501 ~~~~~~~l~i~K~R~g~~G~ 520 (539)
....+.+.|+|+++.+.
T Consensus 212 ---~~r~l~v~K~r~~~~~~ 228 (243)
T 1n0w_A 212 ---ETRICKIYDSPCLPEAE 228 (243)
T ss_dssp ---TEEEEEECCBTTBSCEE
T ss_pred ---CeEEEEEEECCCCCCCe
Confidence 25689999999988764
No 28
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.81 E-value=2.3e-18 Score=163.53 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=144.5
Q ss_pred cccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccc
Q 009230 279 FGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 279 ~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~ 356 (539)
.+++||++.||+++ | +++|++++|.|+||+|||||+.+++...+.. +.+|+|++.|++..++..++. ..+.....
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDSIIRQAK--QFNWDFEE 79 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHHHHHHHH--HTTCCCGG
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHHHHHHHH--HhcchHHH
Confidence 47899999999999 4 9999999999999999999999999888875 889999999999988877764 34544433
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCc--EEEEccccccccCCCCCCCHHH
Q 009230 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVR--GLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~--~vvID~~~~l~~~~~~~~~~~~ 434 (539)
+... .+.. +......+. ..++ ....+.+++...+..+....+++ +||||+.+.+.... ..
T Consensus 80 ~~~~----~~~~--~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d------~~ 141 (235)
T 2w0m_A 80 YIEK----KLII--IDALMKEKE--DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK------PA 141 (235)
T ss_dssp GBTT----TEEE--EECCC------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC------GG
T ss_pred HhhC----CEEE--EeccccccC--ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC------HH
Confidence 2210 0000 000000000 1111 12337788887787777778999 99999887765321 12
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEe
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKV 513 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~ 513 (539)
...+++..|+.+++++|++||+++| .+.... .. . ..+++.||.++.|++.+... .....+.|.|+
T Consensus 142 ~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~----~~-----~--~~~~~~~d~vi~l~~~~~~~---~~~r~l~v~K~ 207 (235)
T 2w0m_A 142 MARKISYYLKRVLNKWNFTIYATSQYAITTSQ----AF-----G--FGVEHVADGIIRFRRMIRNG---ELHRYILIEKM 207 (235)
T ss_dssp GHHHHHHHHHHHHHHTTEEEEEEEC----------------------CHHHHCSEEEEEEEEEETT---EEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccCccccc----cc-----c--cchheeeeEEEEEEEEecCC---cEEEEEEEEec
Confidence 3567889999999999999999999 542211 11 1 35889999999999876422 13578999999
Q ss_pred eCCCcce
Q 009230 514 RNKVVGT 520 (539)
Q Consensus 514 R~g~~G~ 520 (539)
|+++.+.
T Consensus 208 r~~~~~~ 214 (235)
T 2w0m_A 208 RQTDHDK 214 (235)
T ss_dssp TTCCCCC
T ss_pred cCCcccc
Confidence 9987653
No 29
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.76 E-value=1.4e-17 Score=160.67 Aligned_cols=212 Identities=12% Similarity=0.069 Sum_probs=132.9
Q ss_pred ccccccCchhhhhhh-----c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCCCCHHHHHHHHHHHhh
Q 009230 278 EFGISTGWRALNELY-----N-VLPGELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENKVREHARKLLEKHI 350 (539)
Q Consensus 278 ~~gi~tg~~~LD~~~-----~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E~~~~~~~~r~~~~~~ 350 (539)
...++||++.||.++ | +++| +++|+|+||+|||||++|++.+++.+ .|.+|+|++.|.+.... | +...
T Consensus 4 ~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--r--a~~l 78 (333)
T 3io5_A 4 MDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--Y--LRSM 78 (333)
T ss_dssp --CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--H--HHHT
T ss_pred CCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--H--HHHh
Confidence 357999999999988 5 9999 99999999999999999999998874 27899999999886543 2 2223
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHH-HHHHHHH--HHHcCCcEEEEccccccccC-C
Q 009230 351 KKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWV-LDLAKAA--VLRHGVRGLVIDPYNELDHQ-R 426 (539)
Q Consensus 351 ~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i-~~~i~~~--~~~~~~~~vvID~~~~l~~~-~ 426 (539)
|++.. ..++. ...+.+++ ...++.+ ++...+++|||||+..+... .
T Consensus 79 Gvd~d-------------------------~llv~-----~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~e 128 (333)
T 3io5_A 79 GVDPE-------------------------RVIHT-----PVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKE 128 (333)
T ss_dssp TCCGG-------------------------GEEEE-----ECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--
T ss_pred CCCHH-------------------------HeEEE-----cCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchh
Confidence 54332 12222 22356666 5555554 45567999999999998742 1
Q ss_pred -CCC--C------CHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 427 -PVS--Q------TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 427 -~~~--~------~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
.+. . .....+.+.++.|..+|+++|++||++.|.++...-. ..|. - .|+..+ ..|.+-|.|.+.+.
T Consensus 129 ieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k~G~~f-g~p~--~-~GG~~l-~~ss~Rl~lrk~~~ 203 (333)
T 3io5_A 129 TEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYETQEMF-SKTV--M-GGGTGP-MYSADTVFIIGKRQ 203 (333)
T ss_dssp ------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-------------------CCG-GGGSSEEEEEEEC-
T ss_pred ccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeeecCccc-CCCC--C-CCccee-eeeeEEEEEEeccc
Confidence 111 1 2334566777888889999999999999965532211 2232 2 566667 88888888876442
Q ss_pred ---CCCCCCCcEEEEEEEeeCCCcceeeeEEEEEe
Q 009230 498 ---PEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYN 529 (539)
Q Consensus 498 ---~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd 529 (539)
.+.-..+.+.+.+.|+|--.......+.+.|+
T Consensus 204 ik~~~~~~G~~~~v~~~k~kv~k~k~~~~~~i~~~ 238 (333)
T 3io5_A 204 IKDGSDLQGYQFVLNVEKSRTVKEKSKFFIDVKFD 238 (333)
T ss_dssp ---------CEEEEEEEECSSBCTTCEEEEEBCTT
T ss_pred cccCCccEEeEEEEeEEEEEEccCCcCCcEEEEec
Confidence 11112345677778877644433323334333
No 30
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.74 E-value=2.5e-17 Score=156.12 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=126.5
Q ss_pred CccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-----cCCeEEEEeCCCC--HHHHHHHHHH
Q 009230 277 DEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEH-----AGWKFVLCSMENK--VREHARKLLE 347 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-----~g~~vl~~s~E~~--~~~~~~r~~~ 347 (539)
....++||++.||.++ | +++|+++.|.|++|+|||||+..++...... .+..++|++.|.. .+++....
T Consensus 3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~-- 80 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIA-- 80 (231)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH--
T ss_pred cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHH--
Confidence 4568999999999999 4 9999999999999999999999998765541 1567999999875 44332221
Q ss_pred HhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHH-----HcCCcEEEEcccccc
Q 009230 348 KHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-----RHGVRGLVIDPYNEL 422 (539)
Q Consensus 348 ~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~-----~~~~~~vvID~~~~l 422 (539)
...+ +..+ .+ .+...+... ............+..+.. ..++++|++|+....
T Consensus 81 ~~~~--------------~~~~---~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 81 QNRG--------------LDPD---EV----LKHIYVARA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHTT--------------SCHH---HH----HHTEEEEEC--CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHcC--------------CCHH---HH----hhcEEEEec--CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 1122 2222 11 122222211 111111222334444444 568999999988776
Q ss_pred ccCCCCCCC----HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCC
Q 009230 423 DHQRPVSQT----ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRD 497 (539)
Q Consensus 423 ~~~~~~~~~----~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~ 497 (539)
.....++.. +...+.+++..|+.++++.|++||+++| .+. ++..+++.||.++.|.+...
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~---------------~g~~~~~~~d~~l~l~~~~~ 202 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQAN---------------GGHILAHSATLRVYLRKGKG 202 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------------------------CCSEEEEEEECTT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccC---------------cchhhHhhceEEEEEEecCC
Confidence 543211111 1122568999999999999999999999 433 34568899999999998442
Q ss_pred CCCCCCCcEEEEEEEeeCCCccee
Q 009230 498 PEAGPIDRVQVCVRKVRNKVVGTI 521 (539)
Q Consensus 498 ~~~~~~~~~~l~i~K~R~g~~G~~ 521 (539)
....+.+.|+|+++.|.+
T Consensus 203 ------~~r~l~~~K~r~~~~~~~ 220 (231)
T 4a74_A 203 ------GKRIARLIDAPHLPEGEA 220 (231)
T ss_dssp ------SCEEEEEESCC--CCSCE
T ss_pred ------CeEEEEEEeCCCCCCceE
Confidence 356789999999988874
No 31
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.72 E-value=4.3e-17 Score=190.95 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=140.4
Q ss_pred CCccccccCchhhhhhh--c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 276 GDEFGISTGWRALNELY--N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~--~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
....++|||+++||+++ | +++|++++|+|+||+|||+|++|++.+++.+ +.+|+|||+||+..++. +...|+
T Consensus 708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~-g~~VlyiS~Ees~~ql~----A~rlG~ 782 (2050)
T 3cmu_A 708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPIY----ARKLGV 782 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEECTTSCCCHHH----HHHTTC
T ss_pred cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHH----HHHcCC
Confidence 45678999999999999 3 9999999999999999999999999999885 88999999999999885 222232
Q ss_pred CccccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccccc-C----C-
Q 009230 353 PFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDH-Q----R- 426 (539)
Q Consensus 353 ~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~-~----~- 426 (539)
+. ..+++ .+..+++++.+.++.+..+.++++||||++..+.. . .
T Consensus 783 ~~--------------------------~~l~i----~~~~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~ 832 (2050)
T 3cmu_A 783 DI--------------------------DNLLC----SQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI 832 (2050)
T ss_dssp CT--------------------------TTCEE----ECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCT
T ss_pred Cc--------------------------cceEE----ecCCCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCC
Confidence 11 12444 24578999999999988888999999995555443 1 1
Q ss_pred CCCCC--HHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 427 PVSQT--ETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 427 ~~~~~--~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
++... ....+.++++.|+.+|+++||+||+++| +|..+.-.+ .| ..-.|+..+...+++.+.|.|.
T Consensus 833 Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e~~fg-dp--~~p~GG~~l~h~a~~Rl~Lrr~ 901 (2050)
T 3cmu_A 833 GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG-NP--ETTTGGNALKFYASVRLDIRRI 901 (2050)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS-CC--EECSSHHHHHHHEEEEEEEEEE
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccchhhcC-CC--ccccCCceeeeeeeEEEEEEee
Confidence 11111 1224788999999999999999999999 887764211 12 2335778999999999999875
No 32
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.71 E-value=1.6e-16 Score=159.59 Aligned_cols=239 Identities=13% Similarity=0.158 Sum_probs=150.4
Q ss_pred chHHHHHHhccccCcc-ccccccchHHHHHHHhhccCCCccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHH
Q 009230 240 GALKEVVENAELYPIM-GLFNFRDYFDEIDAYYHRTSGDEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDA 316 (539)
Q Consensus 240 ~~~~~~~~~A~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~ 316 (539)
..+..+++.|...... +..+..++++.. .....++||++.||.+++ +++|+++.|.|+||+|||||+++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 79 GTALKIIQAARKAANLGTFMRADEYLKKR--------ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp HHHHHHHHHHHHHCSTTSCEEHHHHHHHH--------HTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCCccHHHHHhhh--------ccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4566666666543222 555555554331 234689999999999985 99999999999999999999999
Q ss_pred HHHHHHHh--c---CCeEEEEeCCCC--HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHHHHHhhccceeEeecC
Q 009230 317 LICNINEH--A---GWKFVLCSMENK--VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN 389 (539)
Q Consensus 317 la~~~a~~--~---g~~vl~~s~E~~--~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~ 389 (539)
++...+.. . +.+|+|++.|.. ++++.. +....+ +..+ .+.+...+...
T Consensus 151 l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~--i~q~~~--------------~~~~-------~v~~ni~~~~~-- 205 (349)
T 1pzn_A 151 LAVMVQLPPEEGGLNGSVIWIDTENTFRPERIRE--IAQNRG--------------LDPD-------EVLKHIYVARA-- 205 (349)
T ss_dssp HHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHH--HHHTTT--------------CCHH-------HHGGGEEEEEC--
T ss_pred HHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHH--HHHHcC--------------CCHH-------HHhhCEEEEec--
Confidence 99876421 2 368999999986 333322 122111 2221 12223333321
Q ss_pred CCCCCHHHHHHHHHHHHHH-----cCCcEEEEccccccccCCCCC-C---CHHHHHHHHHHHHHHHHHHhCcEEEEEec-
Q 009230 390 DSLPSIKWVLDLAKAAVLR-----HGVRGLVIDPYNELDHQRPVS-Q---TETEYVSQMLTMVKRFAQHHACHVWFVAH- 459 (539)
Q Consensus 390 ~~~~~~~~i~~~i~~~~~~-----~~~~~vvID~~~~l~~~~~~~-~---~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q- 459 (539)
........+...++.++.. .++++||||+.+.++.....+ . .+...+.+++..|+.+++++|++||+++|
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 1111233455566666666 689999999999876432111 1 12234778999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcEEEEEEEeeCCCcce
Q 009230 460 PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRKVRNKVVGT 520 (539)
Q Consensus 460 ~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K~R~g~~G~ 520 (539)
........+. ..-..|+..+++.+|..|.+.+... ....+.+.|+|+++.|.
T Consensus 286 ~~~~~~~~~~---~~~~~~G~~l~~~~~~rL~l~~~~~------~~Ri~k~~ks~~~~~~~ 337 (349)
T 1pzn_A 286 QARPDAFFGD---PTRPIGGHILAHSATLRVYLRKGKG------GKRIARLIDAPHLPEGE 337 (349)
T ss_dssp C------------------CCCCCTTCSEEEEEEECTT------SEEEEEESCSSSSCCSE
T ss_pred ccccccccCC---ccccCCcceEeecCcEEEEEEEcCC------CeEEEEEEeCCCCCCeE
Confidence 4433211011 1123567788999999999998642 24567778888877765
No 33
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.64 E-value=1.1e-14 Score=139.64 Aligned_cols=218 Identities=16% Similarity=0.181 Sum_probs=130.5
Q ss_pred CccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
...+++||++.||+++ | +++|+++.|.|++|+|||||+..++...+...+..++|++.|.+..++..++. ..+..+
T Consensus 8 ~~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~ 85 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA--SFGWDF 85 (251)
T ss_dssp CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH--TTTCCH
T ss_pred ccceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH--HcCCCh
Confidence 4568999999999999 3 99999999999999999999999997777234889999999999887765542 223322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
....... .+..-+.............+. ......++++...+.......+++++++|+...++.... +..
T Consensus 86 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~---d~~- 155 (251)
T 2ehv_A 86 EKYEKEG---KIAIVDGVSSVVGLPSEEKFV---LEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE---EER- 155 (251)
T ss_dssp HHHHHTT---SEEEEC----------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS---SGG-
T ss_pred HHHhhcC---CEEEEEcccccccccccccee---ccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC---CHH-
Confidence 2110000 000000000000000000000 012334667777776666778999999998877664221 111
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhcc-ceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKC-DNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~a-D~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
...+.+..|....++.|++||+++| ...... .+ ....+++.+ |.++.|...+... .....+.+.|
T Consensus 156 ~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~---------~~-~~~~i~~~~aD~vi~l~~~~~~~---~~~r~l~i~K 222 (251)
T 2ehv_A 156 KIREVLLKLNTILLEMGVTTILTTEAPDPQHG---------KL-SRYGIEEFIARGVIVLDLQEKNI---ELKRYVLIRK 222 (251)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEECCC----C---------CS-SSSSCGGGGCSEEEEEEEEECSS---SEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEECCCCCCcc---------cc-cccChhhEeeeEEEEEeeeccCC---eeEEEEEEEE
Confidence 1223223333333567999999999 443310 01 113457787 9999998765422 1256789999
Q ss_pred eeCCCcc
Q 009230 513 VRNKVVG 519 (539)
Q Consensus 513 ~R~g~~G 519 (539)
.|.+...
T Consensus 223 ~r~~~~~ 229 (251)
T 2ehv_A 223 MRETRHS 229 (251)
T ss_dssp ETTCCCC
T ss_pred ccCCCcC
Confidence 9987654
No 34
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.62 E-value=1.6e-14 Score=153.61 Aligned_cols=202 Identities=17% Similarity=0.203 Sum_probs=139.0
Q ss_pred CccccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....+++|++.||.+++ +.+|++++|.|++|+|||||+.+++...+.. |.+++|+++|.+..++..++.. .+
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~~~l~~~~~~--~g--- 332 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESRAQLLRNAYS--WG--- 332 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCHHHHHHHHHT--TS---
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCHHHHHHHHHH--cC---
Confidence 44678999999999985 9999999999999999999999999887764 8899999999998887766521 12
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHH
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETE 434 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~ 434 (539)
++.+++. ....+.+........+..+....+...+...+++++||||...|.... ...+
T Consensus 333 -----------~~~~~~~------~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~----~~~~ 391 (525)
T 1tf7_A 333 -----------MDFEEME------RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGV----SNNA 391 (525)
T ss_dssp -----------CCHHHHH------HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSS----CHHH
T ss_pred -----------CCHHHHH------hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhC----ChHH
Confidence 2222211 111122211112334566666666666667899999999888876532 1222
Q ss_pred HHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCccccccc-ccchhccceEEEEEeCCCCCCCCCCcEEEEEEE
Q 009230 435 YVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGS-AHFINKCDNGIVIHRNRDPEAGPIDRVQVCVRK 512 (539)
Q Consensus 435 ~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs-~~i~~~aD~vl~l~r~~~~~~~~~~~~~l~i~K 512 (539)
..+.+..|-..+++.|++||+++| ..+.. .+.++ ..++..||.|+.|+..+... .....+.+.|
T Consensus 392 -~~~~i~~ll~~l~~~g~tvilvsh~~~~~~----------~~~~~~~~l~~~~D~vi~L~~ge~~~---~~~R~l~v~K 457 (525)
T 1tf7_A 392 -FRQFVIGVTGYAKQEEITGLFTNTSDQFMG----------AHSITDSHISTITDTIILLQYVEIRG---EMSRAINVFK 457 (525)
T ss_dssp -HHHHHHHHHHHHHHTTCEEEEEEECSSSSC----------CCSSCSSCCTTTCSEEEEEEEEEETT---EEEEEEEEEE
T ss_pred -HHHHHHHHHHHHHhCCCEEEEEECcccccC----------cccccCcccceeeeEEEEEEEEEeCC---EEEEEEEEEE
Confidence 334444444455678999999999 43332 13343 55788999999998765321 2357889999
Q ss_pred eeCCCcc
Q 009230 513 VRNKVVG 519 (539)
Q Consensus 513 ~R~g~~G 519 (539)
+|.++..
T Consensus 458 ~R~~~~~ 464 (525)
T 1tf7_A 458 MRGSWHD 464 (525)
T ss_dssp ESSSCCC
T ss_pred CCCCCCC
Confidence 9999873
No 35
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.61 E-value=9.4e-15 Score=138.99 Aligned_cols=222 Identities=8% Similarity=-0.093 Sum_probs=131.6
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCcccc
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEA 357 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i 357 (539)
.++||+++||++++ +++|.+++|.|.||+|||+|++|++.+.+.+ |.+++||++|+++.++..++.+ .|+++...
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~-Ge~~~~~~~~e~~~~l~~~~~~--~G~dl~~~ 78 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS-DNLVGMFSISYPLQLIIRILSR--FGVDVIKY 78 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHH--TTCCHHHH
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC-CCcEEEEEEeCCHHHHHHHHHH--cCCCHHHH
Confidence 47899999999996 9999999999999999999999999999986 9999999999999999988854 56665543
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhc---cceeEeecCCCCCCHHHHHHHHHHHHHH----------cC-Cc-EEEEcccccc
Q 009230 358 NYGGSAERMTVEEFEQGKAWLSN---TFSLIRCENDSLPSIKWVLDLAKAAVLR----------HG-VR-GLVIDPYNEL 422 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~~l~~---~~~~i~~~~~~~~~~~~i~~~i~~~~~~----------~~-~~-~vvID~~~~l 422 (539)
...+...-++. .. ..+.. ...++ .+....+++++...++.++.. .+ .+ ++|||++..+
T Consensus 79 ~~~g~l~i~d~--~~---~~~~~~~~~~~v~--~~~~e~d~~~l~~~i~~iv~~~~~~~~i~~~~~~~rvv~vidsldsl 151 (260)
T 3bs4_A 79 LENHRLAIVDT--FG---SFHGIKATMPGVW--YLEGMLSSETLPIKYAKAVEDHKKVWMDLNLFEGRELYGFAISMSGY 151 (260)
T ss_dssp HHTTSEEEECH--HH---HHHTC---CTTEE--CCCSCCCTTTHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEEETGGGG
T ss_pred hhCCcEEEEEc--cc---cccccccccccee--cccccCCHHHHHHHHHHHHHhhccccchhhccCCceEEEEEeecchH
Confidence 21100000111 00 01110 11111 111134555554444444433 24 45 3577766665
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHH-----HHHH-hCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 423 DHQRPVSQTETEYVSQMLTMVKR-----FAQH-HACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~Lk~-----lA~~-~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
.... .....+..+...+.. +.++ .+++++++.+ ..... .....+...||.||.|...+
T Consensus 152 ~~~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~ttil~~~-~~~~~-----------~~~~~l~~laD~VI~lr~~e 215 (260)
T 3bs4_A 152 LEVF----TPEETLRYLETSAEVRYGHPAYKKYPRGTNFWLWE-GVKDK-----------RVLLSVYRRADYVLKTRSSL 215 (260)
T ss_dssp GGTS----CHHHHHHHHHHHHHHHHHCHHHHSSCCCEEEEEEE-SCSCH-----------HHHHHHHHHCSEEEEEEEEE
T ss_pred HHHh----ChhhHHHHHHHHHHhhhhHHHHhccCCcEEEEEEC-CCccc-----------ccccceEEEeeEEEEEEEEe
Confidence 5432 222222223333222 3344 6777777765 11110 11245678899999998765
Q ss_pred CCCCCCCCcEEEEEEEeeCCCcceeeeEEEEEeCC
Q 009230 497 DPEAGPIDRVQVCVRKVRNKVVGTIGEAFLSYNRV 531 (539)
Q Consensus 497 ~~~~~~~~~~~l~i~K~R~g~~G~~~~~~l~fd~~ 531 (539)
... .-...|.|.|.|.+..-. +.-++.|...
T Consensus 216 ~~g---~~rR~L~V~K~Rg~~~~~-~~re~~i~~~ 246 (260)
T 3bs4_A 216 GEN---GIKRELLVIKTPKPIEEL-VRFEYEFKGN 246 (260)
T ss_dssp ETT---EEEEEEEEEECCC------CEEEEEEETT
T ss_pred cCC---ceEEEEEEEECCCCCcCC-ceEEEEEecC
Confidence 321 124789999999865432 2224566554
No 36
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.16 E-value=7.2e-11 Score=114.67 Aligned_cols=124 Identities=20% Similarity=0.156 Sum_probs=89.0
Q ss_pred ccccCchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC--CCHHHHHHHHHHHhhCCCccc
Q 009230 280 GISTGWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME--NKVREHARKLLEKHIKKPFFE 356 (539)
Q Consensus 280 gi~tg~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E--~~~~~~~~r~~~~~~~~~~~~ 356 (539)
-++||++.||++++ +++|.+++|.|+||+|||+|+++++.+ . |.+|+|+++| ++ ++.
T Consensus 105 ~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~---~-G~~VlyIs~~~eE~--------------v~~-- 164 (331)
T 2vhj_A 105 ELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA---L-GGKDKYATVRFGEP--------------LSG-- 164 (331)
T ss_dssp TCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH---H-HTTSCCEEEEBSCS--------------STT--
T ss_pred ccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh---C-CCCEEEEEecchhh--------------hhh--
Confidence 36799999999998 999999999999999999999999876 3 7899999993 32 000
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCC---CCCHH
Q 009230 357 ANYGGSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV---SQTET 433 (539)
Q Consensus 357 i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~---~~~~~ 433 (539)
+. .+++.+...+.....+.+ +||||++..+...... .....
T Consensus 165 ---------~~-------------------------~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s~~G~v~ 208 (331)
T 2vhj_A 165 ---------YN-------------------------TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNTTSGGIS 208 (331)
T ss_dssp ---------CB-------------------------CCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----------CC
T ss_pred ---------hh-------------------------cCHHHHHHHHHHHHhhCC--EEEEecccccccccccccccchHH
Confidence 00 123444544544445555 9999998887532210 00012
Q ss_pred HHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 434 EYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 434 ~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
+.+.+++..|..++++.+++++++.+
T Consensus 209 ~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 209 RGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 45778999999999999999888766
No 37
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.09 E-value=1.1e-08 Score=108.58 Aligned_cols=202 Identities=12% Similarity=0.107 Sum_probs=123.6
Q ss_pred CccccccCchhhhhhh-c-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCc
Q 009230 277 DEFGISTGWRALNELY-N-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPF 354 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~-~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~ 354 (539)
....+++|.+.||++. | +++|++++|.|++|+|||||+.+++...+...+..++|++.+.+..++..+. ...|+.+
T Consensus 17 ~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~--~~~g~~~ 94 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNA--RSFGWDL 94 (525)
T ss_dssp SCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHH--GGGTCCH
T ss_pred ccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHH--HHcCCCh
Confidence 3467889999999986 5 9999999999999999999999986555554477899999998766554332 2233322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHhhccceeEeecC-------CCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC
Q 009230 355 FEANYGGSAERMTVEEFEQGKAWLSNTFSLIRCEN-------DSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP 427 (539)
Q Consensus 355 ~~i~~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~~-------~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~ 427 (539)
.. .. ....+.++.... -....++.+...+.......++++|+||+.+.+...
T Consensus 95 q~--------------~~-----~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~-- 153 (525)
T 1tf7_A 95 AK--------------LV-----DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ-- 153 (525)
T ss_dssp HH--------------HH-----HTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT--
T ss_pred HH--------------hh-----ccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHh--
Confidence 21 11 001111111100 012234444444444444567999999988765532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CCCCCCCCCCCCCcccccccccchhccceEEEEEeCCCCCCCCCCcE
Q 009230 428 VSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNRDPEAGPIDRV 506 (539)
Q Consensus 428 ~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~~~~~~~~~~~ 506 (539)
...+......+.+.++.+.+ .|++||+++| ...... .......+..||.|+.|...... + ....
T Consensus 154 -~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~----------~~~~~i~~~laD~vi~L~~~~~~--G-~~~r 218 (525)
T 1tf7_A 154 -YDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGP----------IARYGVEEFVSDNVVILRNVLEG--E-RRRR 218 (525)
T ss_dssp -TCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSC----------SSTTSCHHHHCSEEEEEEEECST--T-CCEE
T ss_pred -cCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccc----------cccccceeeeeeEEEEEEEEccC--C-ceeE
Confidence 12233444566666666655 6999999999 432211 01111125669999999875431 1 1245
Q ss_pred EEEEEEeeCC
Q 009230 507 QVCVRKVRNK 516 (539)
Q Consensus 507 ~l~i~K~R~g 516 (539)
.+.+.|.|..
T Consensus 219 ~l~~~k~r~~ 228 (525)
T 1tf7_A 219 TLEILKLRGT 228 (525)
T ss_dssp EEEEEEETTS
T ss_pred EEEEEECCCC
Confidence 6778887753
No 38
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.75 E-value=8e-09 Score=96.11 Aligned_cols=145 Identities=11% Similarity=0.097 Sum_probs=90.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 373 (539)
-.+|.+++++|++|+||||.+++++.+++.+ |.+|++++.+.+.. ....++...|+...
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~-g~kVli~~~~~d~r--~~~~i~srlG~~~~------------------ 67 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYA-DVKYLVFKPKIDTR--SIRNIQSRTGTSLP------------------ 67 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCCGG--GCSSCCCCCCCSSC------------------
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEEeccCch--HHHHHHHhcCCCcc------------------
Confidence 4678999999999999999999999998875 99999998887543 11111111111100
Q ss_pred HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 009230 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453 (539)
Q Consensus 374 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~ 453 (539)
.+.+ ...+++.+.++.......+++|+||....+. .++++.|+.++. .+++
T Consensus 68 --------~~~~-------~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~-------------~~~ve~l~~L~~-~gi~ 118 (223)
T 2b8t_A 68 --------SVEV-------ESAPEILNYIMSNSFNDETKVIGIDEVQFFD-------------DRICEVANILAE-NGFV 118 (223)
T ss_dssp --------CEEE-------SSTHHHHHHHHSTTSCTTCCEEEECSGGGSC-------------THHHHHHHHHHH-TTCE
T ss_pred --------cccc-------CCHHHHHHHHHHHhhCCCCCEEEEecCccCc-------------HHHHHHHHHHHh-CCCe
Confidence 0111 1224455544433223458999999775432 124455566666 4999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 454 vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
||++-|...-.+ .-+.++..+...||.|.-|..-.
T Consensus 119 Vil~Gl~~df~~--------~~F~~~~~Ll~lAD~V~el~~ic 153 (223)
T 2b8t_A 119 VIISGLDKNFKG--------EPFGPIAKLFTYADKITKLTAIC 153 (223)
T ss_dssp EEEECCSBCTTS--------SBCTTHHHHHHHCSEEEECCEEC
T ss_pred EEEEeccccccC--------CcCCCcHHHHHHhheEeecceec
Confidence 999988322211 12445677888999999876544
No 39
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=98.54 E-value=1.2e-07 Score=77.39 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=57.1
Q ss_pred CcEEEEechhhHHHHHHhCCCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCE-EEEEecCCccchHHHH
Q 009230 124 SDIIIVEGEMDKLSMEEAGFLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASR-IILATDGDPPGQALAE 202 (539)
Q Consensus 124 ~~v~i~EG~~Dalsl~~~g~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~-ivl~~DnD~~G~~~~~ 202 (539)
+.++||||-.|..+++++|+.++++. +|++ ++ .+...+.+.++ |++++|+|.+|++++.
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~~iI~t-~Gta-------l~------------~~i~~l~~~~~~VIIltD~D~aGe~ir~ 80 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIKNVIDL-SGKR-------YA------------DVVDMLEGKWEKVILLFDLDTHGERINQ 80 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCCCEEEC-TTSC-------HH------------HHHHHHTTTCSEEEECCCSSHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcCcEEEE-CCCc-------HH------------HHHHHHHhCCCEEEEEECCChhHHHHHH
Confidence 67999999999999999999988875 4553 11 12345665565 9999999999999999
Q ss_pred HHHHHhcCCceEE
Q 009230 203 ELARRVGRERCWR 215 (539)
Q Consensus 203 ~~~~~l~~~~~~~ 215 (539)
++.+.|+...+++
T Consensus 81 ~i~~~l~~~~~~v 93 (118)
T 1t6t_1 81 KMKELLSSQGFLV 93 (118)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHhcCccCcee
Confidence 9999997655544
No 40
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.97 E-value=3.4e-05 Score=74.12 Aligned_cols=61 Identities=15% Similarity=0.226 Sum_probs=42.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|--+ ++.+ ......+++.|++++++.|.+||+++|.-.. +.+.||
T Consensus 159 ~~~P~lLlLDEPt-------s~LD-~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~------------------~~~~~d 212 (275)
T 3gfo_A 159 VMEPKVLILDEPT-------AGLD-PMGVSEIMKLLVEMQKELGITIIIATHDIDI------------------VPLYCD 212 (275)
T ss_dssp TTCCSEEEEECTT-------TTCC-HHHHHHHHHHHHHHHHHHCCEEEEEESCCSS------------------GGGGCS
T ss_pred HcCCCEEEEECcc-------ccCC-HHHHHHHHHHHHHHHhhCCCEEEEEecCHHH------------------HHHhCC
Confidence 3689999999222 2233 3445678888888885559999999993221 346789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.+++|..
T Consensus 213 rv~~l~~ 219 (275)
T 3gfo_A 213 NVFVMKE 219 (275)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9998874
No 41
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.90 E-value=4.9e-05 Score=68.07 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=35.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+|+.++|.|+||+|||+++..++..+....|..++|++.+
T Consensus 35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~ 76 (180)
T 3ec2_A 35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76 (180)
T ss_dssp GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 556899999999999999999999988874458888887643
No 42
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=97.88 E-value=7.6e-05 Score=60.98 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=66.6
Q ss_pred CCcEEEEechhhHHHHHHhC--CCceEEcCCCCCCCCCCCCCCChhhhhhhHHHHhHHHHhccCCEEEEEecCCccchHH
Q 009230 123 ESDIIIVEGEMDKLSMEEAG--FLNCVSVPDGAPSSVSKKNVPSEEQDTKYQYLWNCKMYLKQASRIILATDGDPPGQAL 200 (539)
Q Consensus 123 ~~~v~i~EG~~Dalsl~~~g--~~~~v~l~~g~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~ivl~~DnD~~G~~~ 200 (539)
-+.++||||..|..++.+++ ..+++++ +|+-+ .. .... +..+.+.+.|+++.|+|.+|++-
T Consensus 4 i~~vIVVEGk~D~~~L~~~~~~~~~iI~t-~Gsi~--------~~----~l~~----I~~~~~~r~VIi~TD~D~~GekI 66 (119)
T 2fcj_A 4 VEKVIIVEGRSDKQKVAAVLNEPVVIVCT-NGTIS--------DA----RLEE----LADELEGYDVYLLADADEAGEKL 66 (119)
T ss_dssp CCEEEEESSHHHHHHHHHHBSSCCEEEEC-CSCCC--------HH----HHHH----HHHHTTTSEEEEECCSSHHHHHH
T ss_pred cCeEEEEechHHHHHHHHhcCCCCCEEEe-CCccC--------HH----HHHH----HHHHhcCCCEEEEECCCccHHHH
Confidence 35799999999999999998 3455664 45411 00 0011 22334578999999999999999
Q ss_pred HHHHHHHhcCCceEEEecCCCCCCCCCCChHHHHHhcCcchHHHHHHhccc
Q 009230 201 AEELARRVGRERCWRVRWPKKNDVDHFKDANEVLMYLGPGALKEVVENAEL 251 (539)
Q Consensus 201 ~~~~~~~l~~~~~~~~~~p~~~~~~~~kD~nd~l~~~g~~~~~~~~~~A~~ 251 (539)
.+.+.+.++.. ...-+|. ....++++ ..+.+.+++.++..
T Consensus 67 Rk~i~~~lp~~--~hafi~r-----~~~gVE~a----~~~~I~~aL~~~~~ 106 (119)
T 2fcj_A 67 RRQFRRMFPEA--EHLYIDR-----AYREVAAA----PIWHLAQVLLRARF 106 (119)
T ss_dssp HHHHHHHCTTS--EEECCCT-----TTCSTTTS----CHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCC--cEEeccC-----CccCcccC----CHHHHHHHHHhccc
Confidence 99999999764 3444452 22233332 34667777777654
No 43
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.86 E-value=1.1e-05 Score=72.67 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=84.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHH---HHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE---HARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~---~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
-..|.|.+|+|+.|+|||+.+++.+.+...+ +.+|+|++.+.+.+. +..|+ |.
T Consensus 17 ~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~i~S~~-----g~------------------ 72 (195)
T 1w4r_A 17 KTRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSSFCTHD-----RN------------------ 72 (195)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGSCCHHH-----HH------------------
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhhhhhcc-----CC------------------
Confidence 3468999999999999999999999998875 999999998855431 11111 00
Q ss_pred HHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 009230 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 450 (539)
Q Consensus 371 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~ 450 (539)
.. +. ..+ .+.+++.+. ...+++|+||....+ . + +...+..++ +.
T Consensus 73 ------~~-~A-~~~-------~~~~d~~~~------~~~~DvIlIDEaQFf-k------~-------~ve~~~~L~-~~ 116 (195)
T 1w4r_A 73 ------TM-EA-LPA-------CLLRDVAQE------ALGVAVIGIDEGQFF-P------D-------IVEFCEAMA-NA 116 (195)
T ss_dssp ------HS-EE-EEE-------SSGGGGHHH------HHTCSEEEESSGGGC-T------T-------HHHHHHHHH-HT
T ss_pred ------cc-cc-eec-------CCHHHHHHh------ccCCCEEEEEchhhh-H------H-------HHHHHHHHH-HC
Confidence 00 00 111 112233332 235899999966554 1 1 223335666 78
Q ss_pred CcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 451 ACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 451 ~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
|++||+......-.+ .-+.++..+-..||.|.-|..-
T Consensus 117 gk~VI~~GL~~DF~~--------~~F~~~~~Ll~~Ad~v~kl~ai 153 (195)
T 1w4r_A 117 GKTVIVAALDGTFQR--------KPFGAILNLVPLAESVVKLTAV 153 (195)
T ss_dssp TCEEEEEEESBCTTS--------SBCTTGGGGGGGCSEEEECCEE
T ss_pred CCeEEEEeccccccc--------ccchhHHHHHHhcCeEEEeeeE
Confidence 999999877322221 1256778888999999877654
No 44
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.80 E-value=5.7e-05 Score=69.02 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=81.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 373 (539)
-.+|.+.+++|+.|+||||.+++++.++..+ |.+|++|....+.+.-...+.+ ..|.....+.
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kVli~k~~~d~R~ge~~i~s-~~g~~~~a~~--------------- 87 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHAIVFKPCIDNRYSEEDVVS-HNGLKVKAVP--------------- 87 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEECC------------------CCEEE---------------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCCcchHHHHHh-hcCCeeEEee---------------
Confidence 5678999999999999999999999998875 9999999866543311111111 1122211110
Q ss_pred HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 009230 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453 (539)
Q Consensus 374 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~ 453 (539)
+ .. .+++.+.+. ..+++|+||-...+. . +.+..|+.++. .+++
T Consensus 88 -----------~----~~---~~~~~~~~~-----~~~dvViIDEaQF~~-~------------~~V~~l~~l~~-~~~~ 130 (214)
T 2j9r_A 88 -----------V----SA---SKDIFKHIT-----EEMDVIAIDEVQFFD-G------------DIVEVVQVLAN-RGYR 130 (214)
T ss_dssp -----------C----SS---GGGGGGGCC-----SSCCEEEECCGGGSC-T------------THHHHHHHHHH-TTCE
T ss_pred -----------c----CC---HHHHHHHHh-----cCCCEEEEECcccCC-H------------HHHHHHHHHhh-CCCE
Confidence 0 00 011111111 147999999554421 1 12355666665 4999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 454 vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
||+......-.+ .-+.++..+-..||.|.-|..-.
T Consensus 131 Vi~~Gl~~DF~~--------~~F~~~~~Ll~~AD~Vtel~aiC 165 (214)
T 2j9r_A 131 VIVAGLDQDFRG--------LPFGQVPQLMAIAEHVTKLQAVC 165 (214)
T ss_dssp EEEEECSBCTTS--------CBCTTHHHHHHHCSEEEECCCBC
T ss_pred EEEEeccccccc--------CccccHHHHHHhcccEEeeeeEe
Confidence 999876222211 23567788889999999887554
No 45
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.79 E-value=1.2e-05 Score=72.68 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=81.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 373 (539)
..+|.+.+++|+.|+||||.+++++.+...+ |.+|+++....+.+ . +. ..+... +.
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~-g~kV~v~k~~~d~r-----~-----~~--~~i~s~-----~g------ 60 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKIA-KQKIQVFKPEIDNR-----Y-----SK--EDVVSH-----MG------ 60 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC-------------------CEEECT-----TS------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEeccCcc-----c-----hH--HHHHhh-----cC------
Confidence 3568899999999999999999999998775 99999997553321 1 00 011100 00
Q ss_pred HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 009230 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453 (539)
Q Consensus 374 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~ 453 (539)
+.-....+ ... +++.+.+. ...++|+||-...+. + +.+..|+.++.. +++
T Consensus 61 ----~~~~a~~~----~~~---~~i~~~~~-----~~~dvViIDEaqfl~--------~-----~~v~~l~~l~~~-~~~ 110 (191)
T 1xx6_A 61 ----EKEQAVAI----KNS---REILKYFE-----EDTEVIAIDEVQFFD--------D-----EIVEIVNKIAES-GRR 110 (191)
T ss_dssp ----CEEECEEE----SSS---THHHHHCC-----TTCSEEEECSGGGSC--------T-----HHHHHHHHHHHT-TCE
T ss_pred ----CceeeEee----CCH---HHHHHHHh-----ccCCEEEEECCCCCC--------H-----HHHHHHHHHHhC-CCE
Confidence 00000111 111 23333221 247999999544321 1 234566777765 999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeC
Q 009230 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 454 vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
||+......-.+ .-+.++..+...||.|.-+..-
T Consensus 111 Vi~~Gl~~df~~--------~~F~~~~~L~~~AD~V~el~~i 144 (191)
T 1xx6_A 111 VICAGLDMDFRG--------KPFGPIPELMAIAEFVDKIQAI 144 (191)
T ss_dssp EEEEECSBCTTS--------CBCTTHHHHHHHCSEEEECCEE
T ss_pred EEEEeccccccc--------CcCccHHHHHHHcccEEeeeeE
Confidence 999766222111 1245678888999999776543
No 46
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.78 E-value=0.00017 Score=71.79 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=43.6
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccce
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDN 488 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~ 488 (539)
.+++++++|--+ ++.+ ......+++.|+++.++.|++||+++|.-. .+.+.||.
T Consensus 180 ~~P~lLLlDEPT-------s~LD-~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~------------------~~~~~aDr 233 (366)
T 3tui_C 180 SNPKVLLCDQAT-------SALD-PATTRSILELLKDINRRLGLTILLITHEMD------------------VVKRICDC 233 (366)
T ss_dssp TCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHHSCCEEEEEESCHH------------------HHHHHCSE
T ss_pred cCCCEEEEECCC-------ccCC-HHHHHHHHHHHHHHHHhCCCEEEEEecCHH------------------HHHHhCCE
Confidence 579999999222 2233 344567889999999999999999999321 24567888
Q ss_pred EEEEEe
Q 009230 489 GIVIHR 494 (539)
Q Consensus 489 vl~l~r 494 (539)
|++|..
T Consensus 234 v~vl~~ 239 (366)
T 3tui_C 234 VAVISN 239 (366)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 888865
No 47
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.78 E-value=0.00016 Score=72.44 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 397 WVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 397 ~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
+-...++.++ .+++++++|-=+ ++.+ .....++...|+++.++.|+++|+++|.
T Consensus 140 QRVaiArAL~--~~P~lLLLDEPt-------s~LD-~~~~~~l~~~l~~l~~~~g~tii~vTHd 193 (381)
T 3rlf_A 140 QRVAIGRTLV--AEPSVFLLDEPL-------SNLD-AALRVQMRIEISRLHKRLGRTMIYVTHD 193 (381)
T ss_dssp HHHHHHHHHH--HCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHHHCCEEEEECSC
T ss_pred HHHHHHHHHH--cCCCEEEEECCC-------cCCC-HHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3344444443 478999999222 2233 3344678888999999999999999993
No 48
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.76 E-value=4.2e-05 Score=73.22 Aligned_cols=60 Identities=13% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceE
Q 009230 410 GVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNG 489 (539)
Q Consensus 410 ~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~v 489 (539)
+++++++|- +.++.+ ......+++.|++++++.+++||+++|.-. .+.+.||.+
T Consensus 165 ~p~lLllDE-------Pts~LD-~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~------------------~~~~~~d~v 218 (266)
T 4g1u_C 165 TPRWLFLDE-------PTSALD-LYHQQHTLRLLRQLTRQEPLAVCCVLHDLN------------------LAALYADRI 218 (266)
T ss_dssp CCEEEEECC-------CCSSCC-HHHHHHHHHHHHHHHHHSSEEEEEECSCHH------------------HHHHHCSEE
T ss_pred CCCEEEEeC-------ccccCC-HHHHHHHHHHHHHHHHcCCCEEEEEEcCHH------------------HHHHhCCEE
Confidence 799999992 212333 344567888899999888899999999311 245688999
Q ss_pred EEEEeC
Q 009230 490 IVIHRN 495 (539)
Q Consensus 490 l~l~r~ 495 (539)
++|+.-
T Consensus 219 ~vl~~G 224 (266)
T 4g1u_C 219 MLLAQG 224 (266)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 988753
No 49
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.76 E-value=0.00014 Score=68.15 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=43.3
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|--+ ++.+ ......+++.|++++++.+.+||+++|.-. +...||
T Consensus 161 ~~~p~llllDEPt-------s~LD-~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-------------------~~~~~d 213 (235)
T 3tif_A 161 ANNPPIILADQPT-------WALD-SKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-------------------VARFGE 213 (235)
T ss_dssp TTCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHHHCCEEEEECSCHH-------------------HHTTSS
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-------------------HHHhCC
Confidence 3579999999222 2233 344567888899999888999999999311 224789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|+.
T Consensus 214 ~i~~l~~ 220 (235)
T 3tif_A 214 RIIYLKD 220 (235)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999974
No 50
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.73 E-value=0.00067 Score=69.16 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
++.+++++|++|+||||++..+|..++.+ |.+|++++.+.-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~-G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR-GYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 35799999999999999999999988875 999999998843
No 51
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.72 E-value=8.7e-05 Score=70.67 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=41.7
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|-=+ ++.+ ......+++.|++++++ +.+||+++|.-.. +...||
T Consensus 169 ~~~p~lllLDEPt-------s~LD-~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~------------------~~~~~d 221 (257)
T 1g6h_A 169 MTNPKMIVMDEPI-------AGVA-PGLAHDIFNHVLELKAK-GITFLIIEHRLDI------------------VLNYID 221 (257)
T ss_dssp HTCCSEEEEESTT-------TTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCST------------------TGGGCS
T ss_pred HcCCCEEEEeCCc-------cCCC-HHHHHHHHHHHHHHHHC-CCEEEEEecCHHH------------------HHHhCC
Confidence 3679999999222 2223 34456788888888765 9999999994221 346889
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 222 ~v~~l~~ 228 (257)
T 1g6h_A 222 HLYVMFN 228 (257)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9998863
No 52
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.69 E-value=0.00028 Score=70.03 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=33.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|-=+ ++.+ .....++...|+++.++.+++||+++|.
T Consensus 161 ~~~P~lLLLDEP~-------s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 161 APRPQVLLFDEPF-------AAID-TQIRRELRTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp TTCCSEEEEESTT-------CCSS-HHHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 3579999999222 2223 3445678888899999999999999993
No 53
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.69 E-value=0.00054 Score=63.07 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=36.1
Q ss_pred CCCcE-EEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 295 LPGEL-TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 295 ~~G~l-~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.+|.+ +++.|++|+|||+++++++..++.+ |.+|+++..+.
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 35776 6678999999999999999999986 99999999886
No 54
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.66 E-value=6.2e-05 Score=68.61 Aligned_cols=141 Identities=13% Similarity=0.062 Sum_probs=84.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQ 373 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~ 373 (539)
-..|.+.+|+|+-|+||||.+++.+.+...+ |.+|++|....+...-.. .++...|.....+
T Consensus 25 ~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~-g~kvli~kp~~D~R~~~~-~I~Sr~G~~~~a~---------------- 86 (219)
T 3e2i_A 25 YHSGWIECITGSMFSGKSEELIRRLRRGIYA-KQKVVVFKPAIDDRYHKE-KVVSHNGNAIEAI---------------- 86 (219)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEEC------------CBTTBCCEEE----------------
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHc-CCceEEEEeccCCcchhh-hHHHhcCCceeeE----------------
Confidence 5679999999999999999999988887764 999999988765442222 2222233222111
Q ss_pred HHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcE
Q 009230 374 GKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACH 453 (539)
Q Consensus 374 ~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~ 453 (539)
.+ .. .++|.+.+ ..++++|+||-. |.+. .+++..|..+| +.|++
T Consensus 87 ----------~v----~~---~~di~~~i-----~~~~dvV~IDEa-QFf~------------~~~v~~l~~la-~~gi~ 130 (219)
T 3e2i_A 87 ----------NI----SK---ASEIMTHD-----LTNVDVIGIDEV-QFFD------------DEIVSIVEKLS-ADGHR 130 (219)
T ss_dssp ----------EE----SS---GGGGGGSC-----CTTCSEEEECCG-GGSC------------THHHHHHHHHH-HTTCE
T ss_pred ----------Ee----CC---HHHHHHHH-----hcCCCEEEEech-hcCC------------HHHHHHHHHHH-HCCCE
Confidence 11 00 11222111 136889999933 3331 14667778888 79999
Q ss_pred EEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 454 VWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 454 vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
|++..=...-. ..-+.++..+-..||.|.-|..--
T Consensus 131 Vi~~GLd~DF~--------~~~F~~~~~Ll~~Ad~v~kl~aiC 165 (219)
T 3e2i_A 131 VIVAGLDMDFR--------GEPFEPMPKLMAVSEQVTKLQAVC 165 (219)
T ss_dssp EEEEEESBCTT--------SCBCTTHHHHHHHCSEEEEECEEC
T ss_pred EEEeecccccc--------cCCCccHHHHHHhcceEEEeeeEc
Confidence 99865421111 123567888999999999887543
No 55
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.62 E-value=0.00011 Score=67.65 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFEQG 374 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~ 374 (539)
..|.+.+++|+.|+||||.+++.+.+...+ |.+|++|....+.+.- ..+.+. .|.....
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~-g~kvli~kp~~D~Ryg-~~i~sr-~G~~~~a------------------ 75 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-SSFCTH-DRNTMEA------------------ 75 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTT-TCCEEEEEETTCCCC-------------CEE------------------
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeecCCccch-HHHHhh-cCCeeEE------------------
Confidence 468999999999999999999999998764 9999999866543211 122111 1221110
Q ss_pred HHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEE
Q 009230 375 KAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHV 454 (539)
Q Consensus 375 ~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~v 454 (539)
+-+ ... +++.+.+ ..+++|+||-...+. . +.++++.| .+.+++|
T Consensus 76 --------~~i----~~~---~di~~~~------~~~dvViIDEaQF~~-------~----v~el~~~l----~~~gi~V 119 (234)
T 2orv_A 76 --------LPA----CLL---RDVAQEA------LGVAVIGIDEGQFFP-------D----IVEFCEAM----ANAGKTV 119 (234)
T ss_dssp --------EEE----SSG---GGGHHHH------TTCSEEEESSGGGCT-------T----HHHHHHHH----HHTTCEE
T ss_pred --------Eec----CCH---HHHHHHh------ccCCEEEEEchhhhh-------h----HHHHHHHH----HhCCCEE
Confidence 111 111 2233222 458999999554431 1 33333333 3489999
Q ss_pred EEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 455 WFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 455 i~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
|+......-.+ .-+.++..+-..||.|.-|..-.
T Consensus 120 I~~GL~~DF~~--------~~F~~~~~Ll~~AD~VtelkaIC 153 (234)
T 2orv_A 120 IVAALDGTFQR--------KPFGAILNLVPLAESVVKLTAVC 153 (234)
T ss_dssp EEECCSBCTTS--------SBCTTGGGGGGGCSEEEECCEEC
T ss_pred EEEeccccccc--------CCcccHHHHHHhcccEEeeeeEe
Confidence 99876322221 12556777888999988775533
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.62 E-value=0.00032 Score=66.53 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=26.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3554444 9999999999999999999987665
No 57
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.60 E-value=8.5e-05 Score=74.38 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 398 VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 398 i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-...++.++ .+++++++|-=+ ++.+ .....++...|+++.++.+++||+++|.
T Consensus 149 RvalArAL~--~~P~lLLLDEP~-------s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 201 (372)
T 1v43_A 149 RVAVARAIV--VEPDVLLMDEPL-------SNLD-AKLRVAMRAEIKKLQQKLKVTTIYVTHD 201 (372)
T ss_dssp HHHHHHHHT--TCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HHHHHHHHh--cCCCEEEEcCCC-------ccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 334444333 579999999222 2223 3345678888899999999999999993
No 58
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.60 E-value=0.00044 Score=69.24 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=33.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|-=+ ++.+ .....++...|+++.++.+++||+++|.
T Consensus 155 ~~~P~lLLLDEP~-------s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 199 (372)
T 1g29_1 155 VRKPQVFLMDEPL-------SNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHD 199 (372)
T ss_dssp HTCCSEEEEECTT-------TTSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred hcCCCEEEECCCC-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEECCC
Confidence 3579999999222 2223 3345678888899988999999999993
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.58 E-value=0.00028 Score=67.24 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=42.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|--+ .+.+ ......+.+.|++++++ +.+||+++|.-. .+.+.||
T Consensus 175 ~~~p~lllLDEPt-------s~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~~d 227 (263)
T 2olj_A 175 AMEPKIMLFDEPT-------SALD-PEMVGEVLSVMKQLANE-GMTMVVVTHEMG------------------FAREVGD 227 (263)
T ss_dssp TTCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHT-TCEEEEECSCHH------------------HHHHHCS
T ss_pred HCCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHhC-CCEEEEEcCCHH------------------HHHHhCC
Confidence 3579999999222 2233 34456788888888776 999999999311 2456899
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 228 ~v~~l~~ 234 (263)
T 2olj_A 228 RVLFMDG 234 (263)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9999863
No 60
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.58 E-value=0.0004 Score=66.35 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=41.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|--+ .+.+ ......+++.|++++++ +.+||+++|.-.. +...||
T Consensus 154 ~~~p~lllLDEPt-------s~LD-~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~------------------~~~~~d 206 (266)
T 2yz2_A 154 VHEPDILILDEPL-------VGLD-REGKTDLLRIVEKWKTL-GKTVILISHDIET------------------VINHVD 206 (266)
T ss_dssp TTCCSEEEEESTT-------TTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCCTT------------------TGGGCS
T ss_pred HcCCCEEEEcCcc-------ccCC-HHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH------------------HHHhCC
Confidence 4689999999222 2223 34456788888888776 9999999994221 335688
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 207 ~v~~l~~ 213 (266)
T 2yz2_A 207 RVVVLEK 213 (266)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 8888863
No 61
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.57 E-value=0.00041 Score=69.16 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=33.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|-=+. +.+ .....++...|+++.++.+++||+++|.
T Consensus 149 ~~~P~lLLLDEP~s-------~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (362)
T 2it1_A 149 VKEPEVLLLDEPLS-------NLD-ALLRLEVRAELKRLQKELGITTVYVTHD 193 (362)
T ss_dssp TTCCSEEEEESGGG-------GSC-HHHHHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred HcCCCEEEEECccc-------cCC-HHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 35799999993332 222 2344678888899988999999999993
No 62
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.57 E-value=0.0003 Score=66.71 Aligned_cols=167 Identities=16% Similarity=0.186 Sum_probs=84.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-----CeEEEEeCC------CCHHHHHHHHHHHhhCCCcc
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFF 355 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-----~~vl~~s~E------~~~~~~~~r~~~~~~~~~~~ 355 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++--.--..| ..+.|+.-+ ++..+. +. ... ....
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~en---l~-~~~-~~~~ 95 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDI---VL-MGR-STHI 95 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHH---HH-GGG-GGGS
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHH---HH-Hhh-hhhc
Confidence 454444 999999999999999999997766532211112 235555432 223222 21 100 0000
Q ss_pred ccccCCCCCCCCHHH---HHHHHHHhhccceeEeecCCCCCCHHH--HHHHHHHHHHHcCCcEEEEccccccccCCCCCC
Q 009230 356 EANYGGSAERMTVEE---FEQGKAWLSNTFSLIRCENDSLPSIKW--VLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQ 430 (539)
Q Consensus 356 ~i~~~~~~~~l~~~~---~~~~~~~l~~~~~~i~~~~~~~~~~~~--i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~ 430 (539)
.+. .....+. ..++.+.+.-. .+.. ......+-.+ -...++. --.+++++++|--+ .+.
T Consensus 96 ~~~-----~~~~~~~~~~~~~~l~~~~l~-~~~~-~~~~~LSgGq~qrv~lAra--L~~~p~lllLDEPt-------s~L 159 (253)
T 2nq2_C 96 NTF-----AKPKSHDYQVAMQALDYLNLT-HLAK-REFTSLSGGQRQLILIARA--IASECKLILLDEPT-------SAL 159 (253)
T ss_dssp CTT-----CCCCHHHHHHHHHHHHHTTCG-GGTT-SBGGGSCHHHHHHHHHHHH--HHTTCSEEEESSSS-------TTS
T ss_pred ccc-----cCCCHHHHHHHHHHHHHcCCh-HHhc-CChhhCCHHHHHHHHHHHH--HHcCCCEEEEeCCc-------ccC
Confidence 000 0011221 22233322100 0000 0012223332 2333333 33579999999222 222
Q ss_pred CHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 431 TETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 431 ~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
+ ......+++.|+.++++.+.+||+++|.-. .+...||.++.|..
T Consensus 160 D-~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~------------------~~~~~~d~v~~l~~ 204 (253)
T 2nq2_C 160 D-LANQDIVLSLLIDLAQSQNMTVVFTTHQPN------------------QVVAIANKTLLLNK 204 (253)
T ss_dssp C-HHHHHHHHHHHHHHHHTSCCEEEEEESCHH------------------HHHHHCSEEEEEET
T ss_pred C-HHHHHHHHHHHHHHHHhcCCEEEEEecCHH------------------HHHHhCCEEEEEeC
Confidence 3 344567788888887777999999999321 13456777777764
No 63
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.56 E-value=0.00017 Score=71.66 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+++.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhc
Confidence 4555544 99999999999999999999876653
No 64
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.55 E-value=0.00028 Score=67.26 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|--+ ++.+ ......+.+.|+.++++ +.+||+++|.-. .+...||
T Consensus 169 ~~~p~lllLDEPt-------s~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~~~~~d 221 (262)
T 1b0u_A 169 AMEPDVLLFDEPT-------SALD-PELVGEVLRIMQQLAEE-GKTMVVVTHEMG------------------FARHVSS 221 (262)
T ss_dssp HTCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHT-TCCEEEECSCHH------------------HHHHHCS
T ss_pred hcCCCEEEEeCCC-------ccCC-HHHHHHHHHHHHHHHhC-CCEEEEEeCCHH------------------HHHHhCC
Confidence 3679999999222 2233 34456778888888766 999999999311 2456889
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 222 ~v~~l~~ 228 (262)
T 1b0u_A 222 HVIFLHQ 228 (262)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9998863
No 65
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.0011 Score=67.69 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=43.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH--HHHHhhCCCcc
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK--LLEKHIKKPFF 355 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r--~~~~~~~~~~~ 355 (539)
++.+++++|++|+||||++..++..++.+ |.+|++++.+......... ..+...+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~-G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~ 156 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR-GYKVGLVAADVYRPAAYDQLLQLGNQIGVQVY 156 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCSCHHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEecCccchhHHHHHHHHHHhcCCcee
Confidence 46899999999999999999999998875 9999999988542222222 23444566554
No 66
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.52 E-value=0.0036 Score=60.92 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=38.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+|++++|.|++|+||||++..+|..++.. |.+|+++..+..
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D~~ 143 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAADTF 143 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECTT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccccc
Confidence 4678999999999999999999999888875 899999998864
No 67
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.46 E-value=0.0002 Score=68.89 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3454444 9999999999999999999977655
No 68
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.46 E-value=0.0013 Score=64.69 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=78.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC---HHHHHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK---VREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~---~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
-.+|+++.|.|++|+||||++..++...... +..|++...+.. +.+... ..+...|+++..-.. .+.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~-~g~V~l~g~D~~r~~a~eql~-~~~~~~gv~~v~q~~-----~~~p~~ 198 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNH-GFSVVIAASDTFRAGAIEQLE-EHAKRIGVKVIKHSY-----GADPAA 198 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEECCSSTTHHHHHH-HHHHHTTCEEECCCT-----TCCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEeecccccchHHHHH-HHHHHcCceEEeccc-----cCCHHH
Confidence 4789999999999999999999999877664 889999987753 222222 223445554332111 233221
Q ss_pred -HHH-HHHHhh-c-cceeEeecCCCCCC-HHHHHHHHHHHHHH--cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHH
Q 009230 371 -FEQ-GKAWLS-N-TFSLIRCENDSLPS-IKWVLDLAKAAVLR--HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443 (539)
Q Consensus 371 -~~~-~~~~l~-~-~~~~i~~~~~~~~~-~~~i~~~i~~~~~~--~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~L 443 (539)
..+ +..... . ...++.. .+... -..+...+..+.+. ....++++|.... .+++..+
T Consensus 199 ~v~e~l~~~~~~~~d~vliDt--aG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------------~~~~~~~ 261 (328)
T 3e70_C 199 VAYDAIQHAKARGIDVVLIDT--AGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------------NAIVEQA 261 (328)
T ss_dssp HHHHHHHHHHHHTCSEEEEEE--CCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------------THHHHHH
T ss_pred HHHHHHHHHHhccchhhHHhh--ccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------------HHHHHHH
Confidence 111 111111 1 1223321 22211 11223333322222 2345678882221 1455667
Q ss_pred HHHHHHhCcEEEEEecC
Q 009230 444 KRFAQHHACHVWFVAHP 460 (539)
Q Consensus 444 k~lA~~~~i~vi~~~q~ 460 (539)
+.|.+..++++++++|.
T Consensus 262 ~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHSCCCEEEEECG
T ss_pred HHHHHhcCCCEEEEeCc
Confidence 78888899999999993
No 69
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.44 E-value=0.00015 Score=72.19 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=33.2
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|-=+ ++.+ ......+...|+++.++.+++||+++|.
T Consensus 149 ~~~P~lLLLDEP~-------s~LD-~~~r~~l~~~l~~l~~~~g~tvi~vTHd 193 (359)
T 2yyz_A 149 VKQPKVLLFDEPL-------SNLD-ANLRMIMRAEIKHLQQELGITSVYVTHD 193 (359)
T ss_dssp TTCCSEEEEESTT-------TTSC-HHHHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HcCCCEEEEECCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3579999999222 2223 3345678888899988999999999993
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.43 E-value=0.0013 Score=66.33 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC--CCHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME--NKVREHARKLLE 347 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E--~~~~~~~~r~~~ 347 (539)
.++|.|+||+|||+++..++.......+.+++|+++. .++..+...++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 8999999999999999988866543215788988843 334555555543
No 71
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.43 E-value=0.0002 Score=67.42 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.4
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|-=+ .+.+ ......+++.|+++++ .+.+||+++|... .+...||
T Consensus 155 ~~~p~lllLDEPt-------s~LD-~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~------------------~~~~~~d 207 (240)
T 1ji0_A 155 MSRPKLLMMDEPS-------LGLA-PILVSEVFEVIQKINQ-EGTTILLVEQNAL------------------GALKVAH 207 (240)
T ss_dssp TTCCSEEEEECTT-------TTCC-HHHHHHHHHHHHHHHH-TTCCEEEEESCHH------------------HHHHHCS
T ss_pred HcCCCEEEEcCCc-------ccCC-HHHHHHHHHHHHHHHH-CCCEEEEEecCHH------------------HHHHhCC
Confidence 3689999999222 2233 3445667788888876 6899999999321 2456889
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 208 ~v~~l~~ 214 (240)
T 1ji0_A 208 YGYVLET 214 (240)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9998863
No 72
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.42 E-value=0.0032 Score=61.02 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.++++.|++|+||||++.+++..++.. |.+|++++.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D~~ 137 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGADVY 137 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 7899999999999999999999998875 999999999853
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.42 E-value=0.00012 Score=65.00 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDA 316 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~ 316 (539)
+.+|+++.|.|++|+|||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 78999999999999999999886
No 74
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.40 E-value=0.00054 Score=67.93 Aligned_cols=44 Identities=11% Similarity=0.114 Sum_probs=32.8
Q ss_pred cCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 409 HGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 409 ~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
.+++++++|-=+ ++.+ ......+...|+++.++.+++||+++|.
T Consensus 144 ~~P~lLLLDEP~-------s~LD-~~~~~~l~~~l~~l~~~~g~tii~vTHd 187 (348)
T 3d31_A 144 TNPKILLLDEPL-------SALD-PRTQENAREMLSVLHKKNKLTVLHITHD 187 (348)
T ss_dssp SCCSEEEEESSS-------TTSC-HHHHHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cCCCEEEEECcc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 579999999222 2223 3345678888899988999999999993
No 75
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.40 E-value=0.0006 Score=64.37 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 554444 99999999999999999999776553
No 76
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.38 E-value=0.00018 Score=67.98 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3454444 9999999999999999999977655
No 77
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.36 E-value=0.00022 Score=70.92 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=32.1
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecC
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHP 460 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~ 460 (539)
-.+++++++|-=+.- .+. ....++...|+++.++.+++||+++|.
T Consensus 156 ~~~P~lLLLDEP~s~-------LD~-~~r~~l~~~l~~l~~~~g~tvi~vTHd 200 (353)
T 1oxx_K 156 VKDPSLLLLDEPFSN-------LDA-RMRDSARALVKEVQSRLGVTLLVVSHD 200 (353)
T ss_dssp TTCCSEEEEESTTTT-------SCG-GGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HhCCCEEEEECCccc-------CCH-HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 357999999933222 221 234567788888888899999999993
No 78
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.35 E-value=0.00047 Score=64.07 Aligned_cols=58 Identities=9% Similarity=0.105 Sum_probs=40.3
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|--+ .+.+ ......+.+.|+.++++ +.+||+++|.-. .+ ..||
T Consensus 156 ~~~p~lllLDEPt-------~~LD-~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~------------------~~-~~~d 207 (224)
T 2pcj_A 156 ANEPILLFADEPT-------GNLD-SANTKRVMDIFLKINEG-GTSIVMVTHERE------------------LA-ELTH 207 (224)
T ss_dssp TTCCSEEEEESTT-------TTCC-HHHHHHHHHHHHHHHHT-TCEEEEECSCHH------------------HH-TTSS
T ss_pred HcCCCEEEEeCCC-------CCCC-HHHHHHHHHHHHHHHHC-CCEEEEEcCCHH------------------HH-HhCC
Confidence 3579999999222 2223 34456788888888777 999999999311 12 4789
Q ss_pred eEEEEE
Q 009230 488 NGIVIH 493 (539)
Q Consensus 488 ~vl~l~ 493 (539)
.++.|.
T Consensus 208 ~v~~l~ 213 (224)
T 2pcj_A 208 RTLEMK 213 (224)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988886
No 79
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.0006 Score=68.71 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=40.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhc-------CCeEEEEeCCC---CHHHHHHHHHHHhhC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHA-------GWKFVLCSMEN---KVREHARKLLEKHIK 351 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~-------g~~vl~~s~E~---~~~~~~~r~~~~~~~ 351 (539)
+..++|.|+||+|||+++..++..+.... +.+++++++.. ++..++..++....+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~ 109 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTG 109 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcC
Confidence 34899999999999999999987765531 78899988543 566666666554433
No 80
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.34 E-value=0.0017 Score=63.76 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=38.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+|++++|.|++|+||||++..+|..++.. |.+|+++..+..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~~ 144 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADTF 144 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCc
Confidence 5678999999999999999999999988875 999999998864
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.34 E-value=0.0047 Score=60.00 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=37.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+|+++.|.|++|+||||++..++...... +..|.+...+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCS
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeeccc
Confidence 6789999999999999999999999877654 889998887753
No 82
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.30 E-value=0.0011 Score=70.09 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=44.0
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|-=+ .+.+ ......+++.|++++++.+.+||+++|... .+...||
T Consensus 417 ~~~p~lLlLDEPt-------~~LD-~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~------------------~~~~~~d 470 (538)
T 1yqt_A 417 LRDADIYLLDEPS-------AYLD-VEQRLAVSRAIRHLMEKNEKTALVVEHDVL------------------MIDYVSD 470 (538)
T ss_dssp TSCCSEEEEECTT-------TTCC-HHHHHHHHHHHHHHHHHHTCEEEEECSCHH------------------HHHHHCS
T ss_pred HhCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------HHHHhCC
Confidence 3579999999222 2223 345667888899999889999999999322 2456788
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 471 rv~vl~~ 477 (538)
T 1yqt_A 471 RLMVFEG 477 (538)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 8888863
No 83
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.30 E-value=0.0005 Score=72.46 Aligned_cols=61 Identities=15% Similarity=0.098 Sum_probs=44.5
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
..+++++++|- +.++.+ .....++++.|++++++.+.+||+++|.-. .+.+.||
T Consensus 401 ~~~p~lLlLDE-------PT~gLD-~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~------------------~~~~~aD 454 (538)
T 3ozx_A 401 AKEADLYVLDQ-------PSSYLD-VEERYIVAKAIKRVTRERKAVTFIIDHDLS------------------IHDYIAD 454 (538)
T ss_dssp HSCCSEEEEES-------TTTTCC-HHHHHHHHHHHHHHHHHTTCEEEEECSCHH------------------HHHHHCS
T ss_pred HcCCCEEEEeC-------CccCCC-HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH------------------HHHHhCC
Confidence 46899999992 222333 344567889999999999999999999321 2456789
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.|+.|..
T Consensus 455 ri~vl~~ 461 (538)
T 3ozx_A 455 RIIVFKG 461 (538)
T ss_dssp EEEEEEE
T ss_pred EEEEEeC
Confidence 9888875
No 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.28 E-value=0.0023 Score=63.28 Aligned_cols=134 Identities=13% Similarity=0.100 Sum_probs=72.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC--------CHHHHHHHHHHHhhCCCccccccCCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN--------KVREHARKLLEKHIKKPFFEANYGGSAER 365 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~--------~~~~~~~r~~~~~~~~~~~~i~~~~~~~~ 365 (539)
+..|.+++|.|++|+|||+++.+++... + ++|+++.. +...+...+......
T Consensus 28 l~~~~~v~i~G~~G~GKT~Ll~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-------------- 87 (350)
T 2qen_A 28 LENYPLTLLLGIRRVGKSSLLRAFLNER----P--GILIDCRELYAERGHITREELIKELQSTISP-------------- 87 (350)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHS----S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCS--------------
T ss_pred HhcCCeEEEECCCcCCHHHHHHHHHHHc----C--cEEEEeecccccccCCCHHHHHHHHHHHHHH--------------
Confidence 4445799999999999999998887542 3 88888753 344444444322110
Q ss_pred CCHHHHHHHHHHhhccceeEe-ec-CCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHH
Q 009230 366 MTVEEFEQGKAWLSNTFSLIR-CE-NDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMV 443 (539)
Q Consensus 366 l~~~~~~~~~~~l~~~~~~i~-~~-~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~L 443 (539)
. +.+. +.+.-. +-+. .. +....+++.+...+..+....++-+||||++..+..... ..+ ..+...|
T Consensus 88 ~--~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~-----~~~~~~L 155 (350)
T 2qen_A 88 F--QKFQ---SKFKIS-LNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG-----KELLALF 155 (350)
T ss_dssp H--HHHH---HHHTCC-CCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT-----HHHHHHH
T ss_pred H--HhHh---hhceeE-EEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch-----hhHHHHH
Confidence 0 0011 111000 0000 00 001235666776666655555577999998887754110 001 2344555
Q ss_pred HHHHHH-hCcEEEEEec
Q 009230 444 KRFAQH-HACHVWFVAH 459 (539)
Q Consensus 444 k~lA~~-~~i~vi~~~q 459 (539)
+.+... .++.+|++..
T Consensus 156 ~~~~~~~~~~~~il~g~ 172 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGS 172 (350)
T ss_dssp HHHHHHCTTEEEEEEES
T ss_pred HHHHHhcCCeEEEEECC
Confidence 555554 4788888765
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.28 E-value=0.0082 Score=59.63 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=37.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+|+++.|.|++|+||||++..++...... +..|++...+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEeccccc
Confidence 6789999999999999999999999877654 889999887753
No 86
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.28 E-value=0.0066 Score=59.01 Aligned_cols=40 Identities=28% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+|+++.|.|++|+||||++..++...... +.+|++...+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEeecC
Confidence 68999999999999999999999777654 78999988775
No 87
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.26 E-value=0.00032 Score=63.07 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+|.+.+++|++|+||||++++++.+...+ |.+|+++..+.+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~-g~~v~~~~~~~d 42 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG-KKKVAVFKPKID 42 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCEEEEEEEC--
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeeccc
Confidence 47899999999999999999999988775 899999987754
No 88
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.24 E-value=0.0015 Score=69.70 Aligned_cols=158 Identities=16% Similarity=0.072 Sum_probs=82.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-----CeEEEEeCC------CCHHHHHHHHHHHhhCCCccccccCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFFEANYGGS 362 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-----~~vl~~s~E------~~~~~~~~r~~~~~~~~~~~~i~~~~~ 362 (539)
+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ .+..+.+. ....+ .
T Consensus 375 ~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~---~~~~~--------~-- 441 (608)
T 3j16_B 375 FSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFF---KKIRG--------Q-- 441 (608)
T ss_dssp CCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHH---HHCSS--------T--
T ss_pred cccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHH---HHhhc--------c--
Confidence 566689999999999999998766532211123 235555433 22333221 11000 0
Q ss_pred CCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~ 442 (539)
........++.+.+.-..+ . .......+=.+--..+-..+...+++++++|- +..+.+ ......+++.
T Consensus 442 --~~~~~~~~~~l~~l~l~~~-~-~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDE-------PT~gLD-~~~~~~i~~l 509 (608)
T 3j16_B 442 --FLNPQFQTDVVKPLRIDDI-I-DQEVQHLSGGELQRVAIVLALGIPADIYLIDE-------PSAYLD-SEQRIICSKV 509 (608)
T ss_dssp --TTSHHHHHHTHHHHTSTTT-S-SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECC-------TTTTCC-HHHHHHHHHH
T ss_pred --cccHHHHHHHHHHcCChhh-h-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC-------CCCCCC-HHHHHHHHHH
Confidence 1122222223333221100 0 00012223222211111112235799999992 222333 3455678888
Q ss_pred HHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 443 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 443 Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
|++++++.+.+||+++|.-. .+...||.++.+..
T Consensus 510 l~~l~~~~g~tviivtHdl~------------------~~~~~aDrvivl~~ 543 (608)
T 3j16_B 510 IRRFILHNKKTAFIVEHDFI------------------MATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHHHTCEEEEECSCHH------------------HHHHHCSEEEECEE
T ss_pred HHHHHHhCCCEEEEEeCCHH------------------HHHHhCCEEEEEeC
Confidence 99999889999999999321 24567888888864
No 89
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.24 E-value=0.0093 Score=61.41 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=36.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+.+|++++|.|++|+||||++..|+..+... +..|++...+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~ 331 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDT 331 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCT
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcc
Confidence 7789999999999999999999998776654 78898887664
No 90
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.0012 Score=66.39 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc--CCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA--GWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~--g~~vl~~s~E 335 (539)
.+..++|.|++|+|||+++..++....... +.+++|+++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 356899999999999999999887765532 6788888753
No 91
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.23 E-value=0.00014 Score=69.83 Aligned_cols=33 Identities=33% Similarity=0.398 Sum_probs=26.9
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3555544 99999999999999999999876653
No 92
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.23 E-value=0.0023 Score=64.26 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEeCCC--CHHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSMEN--KVREHARKLLE 347 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s~E~--~~~~~~~r~~~ 347 (539)
.+..++|.|+||+|||+++..++....... +.+++|+++.. +...+...++.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 101 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAE 101 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHH
Confidence 456789999999999999999988775532 67888887653 34455555443
No 93
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.21 E-value=0.0018 Score=69.15 Aligned_cols=158 Identities=16% Similarity=0.032 Sum_probs=83.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-----CeEEEEeCC------CCHHHHHHHHHHHhhCCCccccccCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-----WKFVLCSME------NKVREHARKLLEKHIKKPFFEANYGGS 362 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-----~~vl~~s~E------~~~~~~~~r~~~~~~~~~~~~i~~~~~ 362 (539)
+.+|+++.|.|++|+|||||+.-++--..-..| ..+.|+.-+ ++..+.+........ .
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~---- 447 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------N---- 447 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------H----
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCC-------C----
Confidence 579999999999999999998876642211112 245555432 334333221100000 0
Q ss_pred CCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTM 442 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~ 442 (539)
..+...++.+.+.-... . .......+-.+-....-..+...+++++++|-=+ .+.+ ......+++.
T Consensus 448 ----~~~~~~~~l~~~~l~~~-~-~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt-------~~LD-~~~~~~l~~~ 513 (607)
T 3bk7_A 448 ----SNFYKTELLKPLGIIDL-Y-DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS-------AYLD-VEQRLAVSRA 513 (607)
T ss_dssp ----CHHHHHHTHHHHTCTTT-T-TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT-------TTCC-HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCchH-h-cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc-------cCCC-HHHHHHHHHH
Confidence 01112222222211000 0 0001122222222211122234679999999222 2233 3455678888
Q ss_pred HHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEe
Q 009230 443 VKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHR 494 (539)
Q Consensus 443 Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r 494 (539)
|++++++.+.+||+++|... .+...||.++.|..
T Consensus 514 l~~l~~~~g~tvi~vsHd~~------------------~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 514 IRHLMEKNEKTALVVEHDVL------------------MIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHHHTTCEEEEECSCHH------------------HHHHHCSEEEEEEE
T ss_pred HHHHHHhCCCEEEEEeCCHH------------------HHHHhCCEEEEEcC
Confidence 99999889999999999321 24567888888863
No 94
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.21 E-value=0.0029 Score=61.27 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=37.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+|++++|.|++|+||||++..++..++...|.+|++++.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 4688999999999999999999999888645899999998853
No 95
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.20 E-value=0.0046 Score=59.92 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
+|+++.|.|++|+||||++..++...+.. |.+|+++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCccc
Confidence 78899999999999999999999988875 8999999988653
No 96
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.15 E-value=0.0088 Score=60.75 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH--HHHHHhhCCCccccccCCCCCCCCHHHH-H
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR--KLLEKHIKKPFFEANYGGSAERMTVEEF-E 372 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~--r~~~~~~~~~~~~i~~~~~~~~l~~~~~-~ 372 (539)
++.+++++|++|+||||++..++..++.. |.+|+++..+...-.... +..+...+++...... ..++.++ .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~-g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~-----~~~p~~i~~ 170 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD-----GESPESIRR 170 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT-----TCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEeeccccCchhHHHHHHhcccCCccEEecCC-----CCCHHHHHH
Confidence 67899999999999999999999998875 999999998854221111 2233445665432211 1344444 3
Q ss_pred HHHHHhh-cc--ceeEeecCCCCCCH-HHHHHHHHHHHHHcCC--cEEEEccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 009230 373 QGKAWLS-NT--FSLIRCENDSLPSI-KWVLDLAKAAVLRHGV--RGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446 (539)
Q Consensus 373 ~~~~~l~-~~--~~~i~~~~~~~~~~-~~i~~~i~~~~~~~~~--~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~l 446 (539)
++.+.+. .. .++| |..+.... ..+...+..+.....+ -++|+|. . . + . ..+..++.|
T Consensus 171 ~~l~~~~~~~~DvVII--DTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa-~---t----g-q------~av~~a~~f 233 (425)
T 2ffh_A 171 RVEEKARLEARDLILV--DTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA-M---T----G-Q------EALSVARAF 233 (425)
T ss_dssp HHHHHHHHTTCSEEEE--ECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG-G---G----T-T------HHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEE--cCCCcccccHHHHHHHHHhhhccCCceEEEEEec-c---c----h-H------HHHHHHHHH
Confidence 4444442 22 2334 32222222 2233333333222233 3566772 1 1 1 1 122334556
Q ss_pred HHHhCcEEEEEec
Q 009230 447 AQHHACHVWFVAH 459 (539)
Q Consensus 447 A~~~~i~vi~~~q 459 (539)
....++..+++++
T Consensus 234 ~~~l~i~GVIlTK 246 (425)
T 2ffh_A 234 DEKVGVTGLVLTK 246 (425)
T ss_dssp HHHTCCCEEEEES
T ss_pred HhcCCceEEEEeC
Confidence 6677888888877
No 97
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.13 E-value=0.0028 Score=56.37 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHh------cCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~------~g~~vl~~s~ 334 (539)
+..++|.|+||+|||+++..++..+... .+.+++++++
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 3568899999999999999998877552 1567776654
No 98
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.13 E-value=9.5e-05 Score=69.55 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=43.5
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccc
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCD 487 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD 487 (539)
-.+++++++|--+ .+.+ ......+++.|+.++++.+.+||+++|.-. .+...||
T Consensus 142 ~~~p~lllLDEPt-------s~LD-~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~------------------~~~~~~d 195 (240)
T 2onk_A 142 VIQPRLLLLDEPL-------SAVD-LKTKGVLMEELRFVQREFDVPILHVTHDLI------------------EAAMLAD 195 (240)
T ss_dssp TTCCSSBEEESTT-------SSCC-HHHHHHHHHHHHHHHHHHTCCEEEEESCHH------------------HHHHHCS
T ss_pred HcCCCEEEEeCCc-------ccCC-HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH------------------HHHHhCC
Confidence 3679999999222 2223 344567888888888888999999999311 2456889
Q ss_pred eEEEEEe
Q 009230 488 NGIVIHR 494 (539)
Q Consensus 488 ~vl~l~r 494 (539)
.++.|..
T Consensus 196 ~i~~l~~ 202 (240)
T 2onk_A 196 EVAVMLN 202 (240)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 9998874
No 99
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.09 E-value=0.00083 Score=65.34 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 3555544 9999999999999999999976554
No 100
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.0039 Score=62.54 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
=+++.||||+|||.++..+|.. .+.+.+.++.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e----~~~~f~~v~~ 215 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH----TDCKFIRVSG 215 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH----HTCEEEEEEG
T ss_pred ceEEeCCCCCCHHHHHHHHHHh----hCCCceEEEh
Confidence 3789999999999998877655 4778777654
No 101
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.05 E-value=0.0045 Score=62.78 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCcEEEE--EcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEeCC--CCHHHHHHHHHH
Q 009230 296 PGELTIV--TGVPNSGKSEWIDALICNINEHA-----GWKFVLCSME--NKVREHARKLLE 347 (539)
Q Consensus 296 ~G~l~~i--~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s~E--~~~~~~~~r~~~ 347 (539)
.+..++| .|++|+|||+++..++....... +.+++|+++. .++..+...++.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVR 109 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHH
Confidence 4568888 99999999999999987765421 5788999853 456666666554
No 102
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0062 Score=62.02 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=28.5
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
|+.+-.=+++.||||+|||+++..+|.. .|.++++++.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e----~~~~~~~v~~ 248 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAAT----IGANFIFSPA 248 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH----HTCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH----hCCCEEEEeh
Confidence 4444345889999999999998877755 3788777763
No 103
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.0086 Score=56.84 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|+.+.- +. |+++.|.|++|+|||||+.-++--.
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 444433 89 9999999999999999988776443
No 104
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0046 Score=62.86 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=64.4
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHH
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 372 (539)
|+.+-.=+++.||||+|||+++..+|.. .+.+++.+++-. +... .+.+.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~----~~~~~~~v~~~~--------------------l~~~----~~Ge~--- 250 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANS----TKAAFIRVNGSE--------------------FVHK----YLGEG--- 250 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHH----HTCEEEEEEGGG--------------------TCCS----SCSHH---
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEecch--------------------hhcc----ccchh---
Confidence 4333334889999999999998887755 377877775421 0000 01110
Q ss_pred HHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCC---C-CCCH-HHHHHHHHHHHHHHH
Q 009230 373 QGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRP---V-SQTE-TEYVSQMLTMVKRFA 447 (539)
Q Consensus 373 ~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~---~-~~~~-~~~~~~~~~~Lk~lA 447 (539)
...+ ..+-..++...+-+|+||.+..+..... . +... ...+.+++..+..+.
T Consensus 251 ----------------------e~~i-r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 251 ----------------------PRMV-RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------------HHHH-HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------------HHHH-HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 1111 1122234556788999998877765431 1 1122 234556666666666
Q ss_pred HHhCcEEEEEec
Q 009230 448 QHHACHVWFVAH 459 (539)
Q Consensus 448 ~~~~i~vi~~~q 459 (539)
...++.||+++.
T Consensus 308 ~~~~v~vI~aTN 319 (428)
T 4b4t_K 308 QSTNVKVIMATN 319 (428)
T ss_dssp SSCSEEEEEEES
T ss_pred CCCCEEEEEecC
Confidence 666776666665
No 105
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.99 E-value=0.0047 Score=56.75 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=26.2
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3554444 9999999999999999999977655
No 106
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.98 E-value=0.0028 Score=67.69 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=26.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
|+.+.- +++|+.+.|.|++|+||||++.-++--
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 444433 899999999999999999998776643
No 107
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.97 E-value=0.00047 Score=61.32 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLL 346 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~ 346 (539)
+++|.|++|||||+|+.+++.. +.+++|+.++.. ..+...|+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHH
Confidence 4789999999999999988743 678999999875 344555543
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.94 E-value=0.0055 Score=58.84 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=29.3
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
++.++.-++|.|+||+|||+++..++.. .+.++++++.
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~----~~~~~~~v~~ 84 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATE----TNATFIRVVG 84 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHH----TTCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHH----hCCCEEEEeh
Confidence 4555667899999999999998887654 3677777654
No 109
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.013 Score=59.01 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.2
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
|+++-.=+++.||||+|||.++..+|.. .+.+++.++.
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e----~~~~fi~v~~ 249 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQ----TSATFLRIVG 249 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHH----HTCEEEEEES
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHH----hCCCEEEEEH
Confidence 4333345889999999999998877755 3778777664
No 110
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.90 E-value=0.041 Score=56.15 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=35.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..+++++|.+|+||||++.++|..++.+.|.+|+.++++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3578888999999999999999999874499999999995
No 111
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.82 E-value=0.0078 Score=66.98 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +++|+++.|.|++|+|||||+.....
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~ 632 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLY 632 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHH
Confidence 444433 89999999999999999999865443
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.80 E-value=0.0062 Score=62.60 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=32.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E~ 336 (539)
+.-++|.|+||+|||+++..++..+.... +.+++|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 35788999999999999999988776542 78899988653
No 113
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.76 E-value=0.034 Score=57.73 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
...++|+|++|+||||++..++..++.+ |.+|++++.+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK-GWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEeccc
Confidence 3578899999999999999999998875 99999999874
No 114
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.76 E-value=0.0013 Score=58.85 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=35.3
Q ss_pred hhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 288 LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
||.-....+|.+++|.|.+|+||||++..++..+... |.++.+++.
T Consensus 4 ~~~~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~-~~~~~~~~~ 49 (186)
T 2yvu_A 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKE-GYRVEVLDG 49 (186)
T ss_dssp ----CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEeeH
Confidence 4543236688999999999999999999999887764 888888763
No 115
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.75 E-value=0.0036 Score=66.89 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+++|+.+.|.|++|+||||++.-++.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 89999999999999999999876654
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.0016 Score=56.29 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=34.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+ +|+.+.|.|++|+|||+++..++..+.. .|.+++|++.+
T Consensus 34 ~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~ 73 (149)
T 2kjq_A 34 K-HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAA 73 (149)
T ss_dssp C-CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETT
T ss_pred c-CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHH
Confidence 5 8999999999999999999998877665 48888888765
No 117
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.70 E-value=0.0068 Score=63.91 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999876653
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.70 E-value=0.0062 Score=59.79 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
.+..-++|.|+||+|||+++..++.. .+.++++++.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~----~~~~~~~v~~ 84 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE----ANSTFFSVSS 84 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH----HTCEEEEEEH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH----HCCCEEEEch
Confidence 34456899999999999998887654 3678777754
No 119
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.011 Score=60.12 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=28.8
Q ss_pred hccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 292 ~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+|+.+-.=+++.||||+|||+++..+|.. .+.+++.++.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e----~~~~fi~vs~ 276 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANR----TDATFIRVIG 276 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHH----HTCEEEEEEG
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhc----cCCCeEEEEh
Confidence 34444456889999999999998877755 3777776654
No 120
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.68 E-value=0.011 Score=64.74 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=65.8
Q ss_pred hccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHHH
Q 009230 292 YNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEEF 371 (539)
Q Consensus 292 ~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~ 371 (539)
+++.+-.=++|.||||+|||+++..+|.. .|.++++++. .++. +. ...+.+
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~e----lg~~~~~v~~----~~l~----sk----------------~~gese- 283 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING----PEIM----SK----------------LAGESE- 283 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTT----TTCEEEEEEH----HHHH----SS----------------CTTHHH-
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHH----hCCeEEEEEh----HHhh----cc----------------cchHHH-
Confidence 34333345889999999999998776643 4777776653 2221 10 000000
Q ss_pred HHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCC--CCCHHHHHHHHHHHHHHHHHH
Q 009230 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV--SQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 372 ~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~--~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
..+. .+-..+..+.+-+|+||.+-.+...... +......+.+++..+..+..+
T Consensus 284 ------------------------~~lr-~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 284 ------------------------SNLR-KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp ------------------------HHHH-HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred ------------------------HHHH-HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 0111 1112234567889999988888754322 233444556666666666666
Q ss_pred hCcEEEEEec
Q 009230 450 HACHVWFVAH 459 (539)
Q Consensus 450 ~~i~vi~~~q 459 (539)
.++.||..+.
T Consensus 339 ~~V~VIaaTN 348 (806)
T 3cf2_A 339 AHVIVMAATN 348 (806)
T ss_dssp GCEEEEEECS
T ss_pred CCEEEEEecC
Confidence 6777776655
No 121
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.66 E-value=0.008 Score=58.39 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=29.0
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
++.++.-++|.|+||+|||+++..++.. .+.+.++++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~----~~~~~i~v~ 81 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISIK 81 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHH----TTCEEEEEC
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHH----hCCCEEEEE
Confidence 3677888999999999999998887754 356666554
No 122
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.65 E-value=0.0032 Score=62.51 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=54.7
Q ss_pred cccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHHHH
Q 009230 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVREHAR 343 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E~~~~~~~~ 343 (539)
..+.||+..+|-++.+.+|+-+.|.|++|+|||+++.+++..+..++ +..++|+...+..+++..
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~ 221 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 221 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHH
Confidence 45778999999888899999999999999999999999998887753 446778888888876643
No 123
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.014 Score=59.43 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=28.3
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
|+++-.=+++.||||+|||.++..+|.. .|.+++.++.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e----~~~~f~~v~~ 248 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQ----TNATFLKLAA 248 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHH----HTCEEEEEEG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHH----hCCCEEEEeh
Confidence 3333345889999999999998877655 4778777764
No 124
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.61 E-value=0.0044 Score=63.39 Aligned_cols=65 Identities=25% Similarity=0.282 Sum_probs=52.2
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVRE 340 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~ 340 (539)
.....+.||+..+|.+..+.+|+-.+|.|++|+|||+++..++.+.+.+++.-++|...-....+
T Consensus 130 ~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGertte 194 (473)
T 1sky_E 130 TEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTRE 194 (473)
T ss_dssp CSCCEECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred ccCccccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchH
Confidence 34456889999999998777899999999999999999999999988765555566655555443
No 125
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.60 E-value=0.0035 Score=65.15 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=38.5
Q ss_pred ccccCchhhhhhhc--cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc---CCeEEEEeCCC
Q 009230 280 GISTGWRALNELYN--VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMEN 336 (539)
Q Consensus 280 gi~tg~~~LD~~~~--l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~---g~~vl~~s~E~ 336 (539)
.++.|...-..-+. +..+.-.+|+|.||+|||+++..++..++..+ ..++..+.+.+
T Consensus 148 ~v~lG~d~~G~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 148 TVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEEEEETTSCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred eEEEEEcCCCCEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 45556433222222 77788899999999999999999998877642 23455555444
No 126
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0038 Score=66.66 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhc
Confidence 78999999999999999999776553
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.02 Score=56.07 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=29.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..+..-++|.|+||+|||+++..++... .+.++++++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~~i~~~ 80 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSS 80 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT---TSCEEEEEECC
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc---CCCcEEEEEhH
Confidence 4445678899999999999998887653 26677666653
No 128
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.55 E-value=0.006 Score=63.93 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=81.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc---CCeEEEEeCCCCHHHHHHHHHHHhhCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREHARKLLEKHIKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~---g~~vl~~s~E~~~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~ 370 (539)
|..+--.+|+|.||+|||+++..++..++..+ ..+++.+.+-+ .++ +...+++--. .. -.-+.++
T Consensus 211 L~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg--~eL-----s~~~~lPHl~--~~---Vvtd~~~ 278 (574)
T 2iut_A 211 LAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM--LEL-----SIYEGIPHLL--CP---VVTDMKE 278 (574)
T ss_dssp GGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS--HHH-----HTTTTCTTBS--SS---CBCCHHH
T ss_pred hhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh--hhh-----HhhcCCCccc--ce---eeCCHHH
Confidence 55555688999999999999999999988642 24566676665 222 2233332110 00 0112333
Q ss_pred HHHHHHHh----hccceeEeecCCCCCCHHHHHHHHHHHHHH---------------------cC--CcEEEEccccccc
Q 009230 371 FEQGKAWL----SNTFSLIRCENDSLPSIKWVLDLAKAAVLR---------------------HG--VRGLVIDPYNELD 423 (539)
Q Consensus 371 ~~~~~~~l----~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~---------------------~~--~~~vvID~~~~l~ 423 (539)
...+..|+ ..+.-.+. ..+-.++......+...... .. .-+||||.+..++
T Consensus 279 a~~~L~~lv~EMerR~~ll~--~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~ 356 (574)
T 2iut_A 279 AANALRWSVAEMERRYRLMA--AMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMM 356 (574)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHh
Confidence 33332222 22111110 01222344333322221110 01 2389999998887
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec-CC
Q 009230 424 HQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH-PR 461 (539)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q-~r 461 (539)
.... ..+...+..|.+.++.+||++|+.+| +.
T Consensus 357 ~~~~------~~~~~~L~~Iar~GRa~GIhLIlaTQRPs 389 (574)
T 2iut_A 357 MIVG------KKVEELIARIAQKARAAGIHLILATQRPS 389 (574)
T ss_dssp HHTC------HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred hhhh------HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence 5321 24556777888888899999999999 54
No 129
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.52 E-value=0.0025 Score=61.80 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
-..++|.|+||+|||+++..+|..+ |.+++++++
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l----~~~~i~v~~ 69 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM----GINPIMMSA 69 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH----TCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCCEEEEeH
Confidence 3467889999999999988887654 778887774
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0028 Score=58.95 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+..++|.|+||+|||+++..++..+... +.++.|++.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~-~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL-ERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEHH
Confidence 46789999999999999999999888775 8999999874
No 131
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.45 E-value=0.037 Score=53.29 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
++.-++|.|+||+|||+++..++.. .+.+.++++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~----~~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE----CSATFLNISA 87 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH----TTCEEEEEES
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH----hCCCeEEeeH
Confidence 4567899999999999998877654 3666666654
No 132
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.44 E-value=0.0034 Score=73.42 Aligned_cols=170 Identities=18% Similarity=0.197 Sum_probs=87.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHHHHHHhhCCCc---cc----cccCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM---ENKVREHARKLLEKHIKKPF---FE----ANYGGSA 363 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~---E~~~~~~~~r~~~~~~~~~~---~~----i~~~~~~ 363 (539)
+++|+.+.|.|++|+||||++.-+..-. .-....+.+=.. +.+...+..++ +....-+. .. |.+|.+.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~lR~~i-~~V~Qdp~LF~gTIreNI~~gld~ 1179 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEHTRSQI-AIVSQEPTLFDCSIAENIIYGLDP 1179 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHHHHTTE-EEECSSCCCCSEEHHHHHSSSSCT
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHHHHhhe-EEECCCCEeeCccHHHHHhccCCC
Confidence 8999999999999999999976554322 111234433221 24455554443 21111110 11 2222222
Q ss_pred CCCCHHHHHHHH------HHhhcc---ceeEeecCCCCCCH--HHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCH
Q 009230 364 ERMTVEEFEQGK------AWLSNT---FSLIRCENDSLPSI--KWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTE 432 (539)
Q Consensus 364 ~~l~~~~~~~~~------~~l~~~---~~~i~~~~~~~~~~--~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~ 432 (539)
...+++++.++. +.+... .....-+.....+- .+.+..+|.+. .+++++++|--+.-++ .+
T Consensus 1180 ~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAll--r~~~ILiLDEaTSaLD------~~ 1251 (1321)
T 4f4c_A 1180 SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALV--RNPKILLLDEATSALD------TE 1251 (1321)
T ss_dssp TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHH--SCCSEEEEESCCCSTT------SH
T ss_pred CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHH--hCCCEEEEeCccccCC------HH
Confidence 356777776653 223221 11110011112232 34555555544 4789999995443331 22
Q ss_pred HHHHHHHHHHHHHHHHHhCcEEEEEecCCCCCCCCCCCCCcccccccccchhccceEEEEEeCC
Q 009230 433 TEYVSQMLTMVKRFAQHHACHVWFVAHPRQLHNWVGEPPNLYDISGSAHFINKCDNGIVIHRNR 496 (539)
Q Consensus 433 ~~~~~~~~~~Lk~lA~~~~i~vi~~~q~r~~~~~~~~~~~~~~l~gs~~i~~~aD~vl~l~r~~ 496 (539)
++ ..+.+.|+++. -+++||+++|.-.. -..||.|++|..-+
T Consensus 1252 tE--~~Iq~~l~~~~--~~~TvI~IAHRLsT-------------------i~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1252 SE--KVVQEALDRAR--EGRTCIVIAHRLNT-------------------VMNADCIAVVSNGT 1292 (1321)
T ss_dssp HH--HHHHHHHTTTS--SSSEEEEECSSSST-------------------TTTCSEEEEESSSS
T ss_pred HH--HHHHHHHHHHc--CCCEEEEeccCHHH-------------------HHhCCEEEEEECCE
Confidence 22 23444444433 48999999992111 24689999997543
No 133
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.43 E-value=0.014 Score=68.41 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=73.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC----CCCHHHHHHHHHHHhhCCCc-------cccccCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM----ENKVREHARKLLEKHIKKPF-------FEANYGGS 362 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~----E~~~~~~~~r~~~~~~~~~~-------~~i~~~~~ 362 (539)
+++|+++.|.|++|+||||++.-+....--. ...+. +.. +.+...+..++ +....-+. ..|..|
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~~~-~G~I~-idG~~i~~~~~~~lr~~i-~~v~Q~~~Lf~~TI~eNI~~g-- 515 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYDVL-KGKIT-IDGVDVRDINLEFLRKNV-AVVSQEPALFNCTIEENISLG-- 515 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSCCS-EEEEE-ETTEETTTSCHHHHHHHE-EEECSSCCCCSEEHHHHHHTT--
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccccc-cCccc-CCCccchhccHHHHhhcc-cccCCcceeeCCchhHHHhhh--
Confidence 8999999999999999999976554322111 12222 221 23444443332 21111110 011122
Q ss_pred CCCCCHHHHHHHHH------Hhhc---cce-eEeecCCCCC--C--HHHHHHHHHHHHHHcCCcEEEEccccccccCCCC
Q 009230 363 AERMTVEEFEQGKA------WLSN---TFS-LIRCENDSLP--S--IKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPV 428 (539)
Q Consensus 363 ~~~l~~~~~~~~~~------~l~~---~~~-~i~~~~~~~~--~--~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~ 428 (539)
.+..+++++.++.+ .+.. ... .+ . +... + ..+-++.+|.+. .+++++++|.-+.-++.
T Consensus 516 ~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~v--G-e~G~~LSGGQkQRiaiARAl~--~~~~IliLDE~tSaLD~--- 587 (1321)
T 4f4c_A 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLV--G-DRGTQLSGGQKQRIAIARALV--RNPKILLLDEATSALDA--- 587 (1321)
T ss_dssp CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEE--S-SSSCCCCHHHHHHHHHHHHHT--TCCSEEEEESTTTTSCT---
T ss_pred cccchHHHHHHHHHHccchhHHHcCCCCCccEe--c-CCCCCCCHHHHHHHHHHHHHc--cCCCEEEEecccccCCH---
Confidence 12356777665532 2222 111 12 1 1112 2 233344444332 47899999966655432
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 429 SQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 429 ~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
.++. .+.+.|..+. .|.++|+++|
T Consensus 588 -~te~----~i~~~l~~~~--~~~T~iiiaH 611 (1321)
T 4f4c_A 588 -ESEG----IVQQALDKAA--KGRTTIIIAH 611 (1321)
T ss_dssp -TTHH----HHHHHHHHHH--TTSEEEEECS
T ss_pred -HHHH----HHHHHHHHHh--CCCEEEEEcc
Confidence 2332 3444444444 3789999999
No 134
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.42 E-value=0.0037 Score=57.15 Aligned_cols=41 Identities=24% Similarity=0.401 Sum_probs=33.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..+|+++.|.|++|+|||||+..++...-.. |..+.+++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d 59 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMD 59 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecC
Confidence 4679999999999999999999887665543 5567788765
No 135
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.009 Score=53.61 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=33.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
-.+| +++|.+++|.||||.++-++..++.+ |.+|+++.+--
T Consensus 26 ~~~g-~i~v~tG~GkGKTTaA~GlalRA~g~-G~rV~~vQF~K 66 (196)
T 1g5t_A 26 EERG-IIIVFTGNGKGKTTAAFGTAARAVGH-GKNVGVVQFIK 66 (196)
T ss_dssp -CCC-CEEEEESSSSCHHHHHHHHHHHHHHT-TCCEEEEESSC
T ss_pred ccCc-eEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeC
Confidence 3444 77788888999999999999999984 99999997653
No 136
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.40 E-value=0.082 Score=49.29 Aligned_cols=136 Identities=10% Similarity=0.005 Sum_probs=73.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe-----CCC------CHHHHHHHHHHHhh-CCCccccccCCCCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----MEN------KVREHARKLLEKHI-KKPFFEANYGGSAERM 366 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s-----~E~------~~~~~~~r~~~~~~-~~~~~~i~~~~~~~~l 366 (539)
+.+.+-.+|+|||++++.++..+.++ |.+|.||- .+. +...+++ -.+..+ +.+...+..-.....+
T Consensus 24 i~ItgT~t~vGKT~vs~gL~~~L~~~-G~~V~~fKPv~~g~~~~~~~~~D~~~~~~-~~~~~~~g~~~~~~~p~~~~~p~ 101 (242)
T 3qxc_A 24 LFISATNTNAGKTTCARLLAQYCNAC-GVKTILLKPIETGVNDAINHSSDAHLFLQ-DNRLLDRSLTLKDISFYRYHKVS 101 (242)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEECCEECSCCTTTCCCSHHHHHHH-HHHTTCTTCCHHHHCCEECSSSS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhC-CCceEEEeeeecCCcccCCCCchHHHHHH-HHHHHhCCCChHHeeeEEECCCC
Confidence 55555569999999999999998886 99999994 221 1121111 112222 4432211000000011
Q ss_pred CHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHH
Q 009230 367 TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRF 446 (539)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~l 446 (539)
++.-- ..+... .....++.|.+.++.+. .+.++||||.-..+..+.. .. .....+
T Consensus 102 sp~~a----a~~~g~--------~~~i~~~~I~~~~~~l~--~~~D~vlIEGagGl~~pl~--~~---------~~~adl 156 (242)
T 3qxc_A 102 APLIA----QQEEDP--------NAPIDTDNLTQRLHNFT--KTYDLVIVEGAGGLCVPIT--LE---------ENMLDF 156 (242)
T ss_dssp CHHHH----HHHHCT--------TCCCCHHHHHHHHHHGG--GTCSEEEEECCSCTTCBSS--SS---------CBHHHH
T ss_pred ChHHH----HHHcCC--------CCcCCHHHHHHHHHHHH--hcCCEEEEECCCCcccccc--cc---------chHHHH
Confidence 11110 011110 00335667776666543 4678999997776664321 11 112346
Q ss_pred HHHhCcEEEEEecCC
Q 009230 447 AQHHACHVWFVAHPR 461 (539)
Q Consensus 447 A~~~~i~vi~~~q~r 461 (539)
|+.++.|||+|+..+
T Consensus 157 A~~l~~pVILV~~~~ 171 (242)
T 3qxc_A 157 ALKLKAKMLLISHDN 171 (242)
T ss_dssp HHHHTCEEEEEECCS
T ss_pred HHHcCCCEEEEEcCC
Confidence 788999999999844
No 137
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.39 E-value=0.004 Score=56.51 Aligned_cols=40 Identities=28% Similarity=0.181 Sum_probs=33.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
..+|+++.|.|++|+||||++..++..+-. .|..+.|+..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~-~G~~~~~~d~ 61 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQ-KGKLCYILDG 61 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCceEEEecC
Confidence 678999999999999999999999887764 3766666663
No 138
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.36 E-value=0.019 Score=57.17 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=40.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE------eCCCCHHHHHHHHHHHhhCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC------SMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~------s~E~~~~~~~~r~~~~~~~~ 352 (539)
..+|..++|.|+||+|||+++..++..+.. ..+...+ +.+++..+...+.+....+.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGP--DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGV 129 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCS--SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc--cCCcccccchhhhhcccchhHHHHHHHHHHHHH
Confidence 445678999999999999999998877532 2344433 45677777777766554443
No 139
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.35 E-value=0.019 Score=61.34 Aligned_cols=26 Identities=23% Similarity=0.297 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|+++.|.|++|+|||||+.-++-
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhC
Confidence 78999999999999999999876653
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.037 Score=53.86 Aligned_cols=57 Identities=11% Similarity=0.118 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc------CCeEEEEeCC--CCHHHHHHHHHHHhhCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSME--NKVREHARKLLEKHIKK 352 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~------g~~vl~~s~E--~~~~~~~~r~~~~~~~~ 352 (539)
++..++|.|+||+|||+++..++..+-... ...++++.+- .++..++..+...+.|.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~ 108 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE 108 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC
Confidence 445778999999999999999988875421 3467788754 45667777777776664
No 141
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.32 E-value=0.0032 Score=67.43 Aligned_cols=31 Identities=26% Similarity=0.523 Sum_probs=25.1
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+++.- +++|+.+.|.|++|+||||++.-++
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 444333 8999999999999999999976554
No 142
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.29 E-value=0.0064 Score=62.06 Aligned_cols=65 Identities=23% Similarity=0.236 Sum_probs=55.5
Q ss_pred CccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 277 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
....+.||+..+|-++-+.+|.=..|.|++|+|||+++.+++.+++.+++.-++|....+..+++
T Consensus 133 ~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv 197 (482)
T 2ck3_D 133 EQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG 197 (482)
T ss_dssp CCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHH
T ss_pred cCcCCccceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHH
Confidence 44578999999999988999999999999999999999999999877555567777777777654
No 143
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.26 E-value=0.036 Score=55.81 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
++.-++|.|+||+|||+++..++.. .+.+++++++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~----~~~~~~~v~~~ 182 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE----SNATFFNISAA 182 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH----TTCEEEEECSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh----hcCcEEEeeHH
Confidence 3457899999999999998877543 47888877763
No 144
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.25 E-value=0.028 Score=55.98 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..-++|.|+||+|||+++..++.. .+.++++++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~----~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ----SGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH----TTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH----cCCeEEEEeh
Confidence 3456889999999999999887654 3778887765
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.23 E-value=0.036 Score=53.65 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCC----eEEEEe
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCS 333 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~----~vl~~s 333 (539)
++.-++|.|+||+|||+++..++..+... +. ++++++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~ 106 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRL-GYVRKGHLVSVT 106 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHT-TSSSSCCEEEEC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCcCCCcEEEEc
Confidence 34468999999999999999998877653 33 666665
No 146
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.21 E-value=0.0053 Score=55.75 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=34.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..+|.++.|+|++|+||||++..++..+... +.+|.+++.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~-~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ-GISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCeEEEeccCc
Confidence 5678999999999999999999888766543 78888886653
No 147
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.21 E-value=0.013 Score=59.72 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=27.3
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+|..|+.+.- +.+| +++|.|++|+||||++.-+.
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 4555665544 9999 99999999999999987654
No 148
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.20 E-value=0.041 Score=56.74 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=26.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+++| ++|.|+||+|||+++..++.. .+.++++++.
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~----~~~~f~~is~ 82 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGE----ANVPFFHISG 82 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHH----HTCCEEEEEG
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHH----cCCCeeeCCH
Confidence 4555 789999999999998887753 3677776653
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.19 E-value=0.0026 Score=57.05 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=29.7
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+.+|++++|.|+||+||||++..++.. .+...++++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 3788999999999999999998887643 24455566543
No 150
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.18 E-value=0.019 Score=61.25 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+++|+.+.|.|++|+||||++.-++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999999999976554
No 151
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.18 E-value=0.0036 Score=56.75 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=31.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.-++|.|+||+|||+++..++..+... +.+++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~-~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR-NVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEEhH
Confidence 578899999999999999999887764 8899998754
No 152
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=96.13 E-value=0.0075 Score=60.24 Aligned_cols=36 Identities=11% Similarity=0.141 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
.+++++|..|+||||++.++|..++.. |.+|+++++
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~-g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQ-GKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC-CCCeEEEeC
Confidence 367889999999999999999999986 999999999
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.13 E-value=0.0064 Score=53.92 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
.+|.+++|.|++|+||||++..++..+.. .|.+++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 36889999999999999999998877654 488888765
No 154
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.13 E-value=0.051 Score=53.96 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
.+..-++|.|+||+|||+++..++..+ +.++++++
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~----~~~~~~v~ 116 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA----NSTFFSVS 116 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH----TCEEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh----CCCEEEee
Confidence 333457889999999999998887653 66777665
No 155
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.12 E-value=0.005 Score=58.45 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
++.+++|+|.||+||||++..++..+.. .|.++++++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~-~g~~~i~~~~ 40 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSK-NNIDVIVLGS 40 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHh-CCCEEEEECc
Confidence 4568999999999999999999887665 3888887765
No 156
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.11 E-value=0.0071 Score=53.15 Aligned_cols=38 Identities=18% Similarity=0.379 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
++.|+|++|+||||++..++..+..+ |.+|..+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~-g~~v~~ik~~~~ 43 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE-GWRVGTVKHHGH 43 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc-CCeeeEEEeCCC
Confidence 68899999999999999999887764 899999987653
No 157
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.10 E-value=0.021 Score=63.00 Aligned_cols=23 Identities=43% Similarity=0.540 Sum_probs=22.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDA 316 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~ 316 (539)
+++|+++.|+|++|+|||||+..
T Consensus 520 i~~Geiv~I~G~nGSGKSTLl~~ 542 (842)
T 2vf7_A 520 FPLGVMTSVTGVSGSGKSTLVSQ 542 (842)
T ss_dssp EESSSEEEEECCTTSSHHHHCCC
T ss_pred EcCCCEEEEEcCCCcCHHHHHHH
Confidence 99999999999999999999986
No 158
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.10 E-value=0.014 Score=63.35 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=25.2
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+.+.- +++|+++.|.|++|+|||||+.-++
T Consensus 338 L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 444433 8999999999999999999986543
No 159
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.08 E-value=0.0061 Score=62.48 Aligned_cols=66 Identities=26% Similarity=0.191 Sum_probs=53.9
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREH 341 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~ 341 (539)
.....+.||+..+|-++-+.+|.=..|.|++|+|||+++.+++.+++.+++.-++|...-+..++.
T Consensus 144 ~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv 209 (498)
T 1fx0_B 144 TKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREG 209 (498)
T ss_dssp CCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHH
T ss_pred ccccccccceeEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHH
Confidence 345578999999999988999999999999999999999999999887555566666666655443
No 160
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.08 E-value=0.0093 Score=66.64 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|++++|.||+|+||||++.+++...
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999986543
No 161
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.07 E-value=0.022 Score=53.69 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=28.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+..-++|.|+||+|||+++..++.. .+.++++++..
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~----~~~~~~~~~~~ 73 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATE----AQVPFLAMAGA 73 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH----HTCCEEEEETT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH----hCCCEEEechH
Confidence 344456889999999999999888764 26677777654
No 162
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.06 E-value=0.0068 Score=55.45 Aligned_cols=40 Identities=20% Similarity=0.084 Sum_probs=34.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+.+|.+++|.|++|+||||++..++..+-...|.++.+++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 7789999999999999999999998877623488888886
No 163
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.04 E-value=0.0029 Score=58.38 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=23.3
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+||||++..++-..
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3555544 8999999999999999999988877543
No 164
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.03 E-value=0.0095 Score=63.77 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+++|+.+.|.|++|+||||++.-++-
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999999876653
No 165
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=96.01 E-value=0.0088 Score=58.78 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+.+++|..|+||||++.++|..+|.. |.+|+.++++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS-GKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC-CCcEEEEeCCCC
Confidence 688899999999999999999999986 999999999974
No 166
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.97 E-value=0.011 Score=56.14 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=33.4
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
.|+.+. +.+|++++|.|++|+||||++.-++..........+.+.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 344444 899999999999999999999888766543214566554
No 167
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.97 E-value=0.061 Score=58.85 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=74.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC-CHHHHHHHHHHHh--hCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKH--IKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~-~~~~~~~r~~~~~--~~~~~~~i~~~~~~~~l~~~~ 370 (539)
+..|+-++|+|+||+|||+.+...+.+.....|.+++|+..-- -..+...++ ... .|+...... | .....+
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~-~~~~~~g~~v~~~~-G----~~~~~~ 116 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTF-KDWELIGFKVAMTS-G----DYDTDD 116 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHH-GGGGGGTCCEEECC-S----CSSSCC
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHH-HHhhcCCCEEEEEe-C----CCCCch
Confidence 5668899999999999999998877766554588999997542 133444444 111 233332221 1 111000
Q ss_pred HHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHH-HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 371 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
.++....++| .|++.+...++.-.. -.++++||||-...+.. ......+..++..++
T Consensus 117 -----~~~~~~~Iiv-------~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-----~~~~~~l~~i~~~~~----- 174 (715)
T 2va8_A 117 -----AWLKNYDIII-------TTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-----PERGPVVESVTIRAK----- 174 (715)
T ss_dssp -----GGGGGCSEEE-------ECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-----TTTHHHHHHHHHHHH-----
T ss_pred -----hhcCCCCEEE-------EcHHHHHHHHhCChhHhhccCEEEEechhhcCC-----cccchHHHHHHHhcc-----
Confidence 1222333433 145555444433111 23578999997665432 122334444554443
Q ss_pred hCcEEEEEec
Q 009230 450 HACHVWFVAH 459 (539)
Q Consensus 450 ~~i~vi~~~q 459 (539)
++.+|+++-
T Consensus 175 -~~~ii~lSA 183 (715)
T 2va8_A 175 -RRNLLALSA 183 (715)
T ss_dssp -TSEEEEEES
T ss_pred -cCcEEEEcC
Confidence 677777776
No 168
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.96 E-value=0.012 Score=58.25 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=53.7
Q ss_pred cccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc-CCeEEEEeCCCCHHHH
Q 009230 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA-GWKFVLCSMENKVREH 341 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-g~~vl~~s~E~~~~~~ 341 (539)
..+.||+..+|-++-+.+|+=..|.|++|+|||+++.+|+.+++.++ +..++|....+..+++
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV 220 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEV 220 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchH
Confidence 35789999999888899999999999999999999999998887753 4567788888887765
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.0055 Score=60.17 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+..++|.|+||+|||+++..++..+... +.+++|++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~~~ 75 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSADD 75 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEHHH
Confidence 4568899999999999999999887765 89999998653
No 170
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.92 E-value=0.0079 Score=58.62 Aligned_cols=38 Identities=18% Similarity=0.173 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHH-HhcCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNIN-EHAGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a-~~~g~~vl~~s~E 335 (539)
+.-++|.|+||+|||+++..++..+. .. |.+|+|++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~-g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK-GVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS-CCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEHH
Confidence 46788999999999999999999888 64 9999998753
No 171
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.92 E-value=0.0015 Score=72.85 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|++++|.||+|+||||++.+++...
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~ 697 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALIT 697 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHH
Confidence 5689999999999999999999987543
No 172
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=95.92 E-value=0.0076 Score=59.99 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=39.8
Q ss_pred hhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHH--HhcCCeEEEEeCCCC
Q 009230 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALICNIN--EHAGWKFVLCSMENK 337 (539)
Q Consensus 288 LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a--~~~g~~vl~~s~E~~ 337 (539)
|+.++.-..-.+++.+|..|+||||++.++|..+| . .|.+|+.++++..
T Consensus 9 l~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~D~~ 59 (354)
T 2woj_A 9 LHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLISTDPA 59 (354)
T ss_dssp CHHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS
T ss_pred HHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC
Confidence 44444322235888999999999999999999999 6 4999999999985
No 173
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0045 Score=55.12 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+|++++|.|+||+||||++..++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999887754
No 174
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.89 E-value=0.045 Score=61.15 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=23.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+.+|+.+.|.|++|+|||||+.-++
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 8999999999999999999988877
No 175
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.89 E-value=0.0054 Score=55.53 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=23.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|..++|.|+||+||||++..++..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999998887553
No 176
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.89 E-value=0.008 Score=56.84 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=36.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..+.-++++.|.+|+||||++.+++..++ . |.+|+.++++.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~-g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-D-NYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-T-TSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-C-CCeEEEEeCCC
Confidence 44556899999999999999999999988 5 99999999885
No 177
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.84 E-value=0.0089 Score=58.17 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+.++.|+|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 345677777999999999999999999986 999999999854
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.81 E-value=0.0053 Score=55.72 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|++++|.|++|+||||++..++..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999998877644
No 179
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.80 E-value=0.0054 Score=55.62 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=22.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+||||++..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999998877644
No 180
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.78 E-value=0.18 Score=46.51 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=28.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH------hcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE------HAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~------~~g~~vl~~s~E 335 (539)
+..|.-+++.+++|+|||...+-.+.+... ..+.+++++..-
T Consensus 59 ~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 59 ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred HhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 455667889999999999865554444332 236778888743
No 181
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.78 E-value=0.0068 Score=60.05 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=35.7
Q ss_pred cccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..+.||...||.++.+.+|+.+.|.|++|+||||++..++..
T Consensus 53 ~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 53 QPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp SEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678899999966999999999999999999997766654
No 182
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.77 E-value=0.012 Score=58.15 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=38.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
|+.+.- +.+|+++.|.|+||+|||||+..++..... .+..|.+++.+.
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~ 93 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDP 93 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECG
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcC
Confidence 444444 889999999999999999999998866655 378899888664
No 183
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.74 E-value=0.013 Score=63.69 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.0
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWI 314 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~ 314 (539)
.|+.+.- +.+|+++.|.|++|+|||||+
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence 4555544 999999999999999999996
No 184
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.73 E-value=0.0066 Score=62.00 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..++|+|++|+||||++..++..++.+ |.+|++++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~-G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR-GLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH-HCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 478899999999999999999999886 99999999884
No 185
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.72 E-value=0.0059 Score=55.69 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+||||++.-++--
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 899999999999999999998877644
No 186
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.70 E-value=0.031 Score=59.61 Aligned_cols=49 Identities=14% Similarity=0.059 Sum_probs=33.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHH---HhcCCeEEEEeCCCC-HHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNIN---EHAGWKFVLCSMENK-VREHARKL 345 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a---~~~g~~vl~~s~E~~-~~~~~~r~ 345 (539)
..+++|.|++|+|||+++.+++.... ......++|+++... ...+...+
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 46999999999999999999886542 221235888887644 33344433
No 187
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.68 E-value=0.0092 Score=53.34 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++|.|+||+||||++..++..+-. .|.++.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN-QGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCceEEEEE
Confidence 6899999999999999999887654 377788884
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.66 E-value=0.0065 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+|++++|.||+|+||||++..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 57899999999999999998877644
No 189
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.65 E-value=0.0095 Score=60.98 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=35.1
Q ss_pred cccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 279 FGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 279 ~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..+.+|...||.++.+.+|+.+.|.|++|+|||||+..++..
T Consensus 139 ~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 139 HVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp SBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345567889999955999999999999999999997666654
No 190
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.65 E-value=0.01 Score=57.82 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=32.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E 335 (539)
..+|+++.|.|++|+|||||+..++.-.....| ..+.|++.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 678999999999999999999887755432223 468888776
No 191
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.64 E-value=0.0078 Score=54.53 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
..+|++++|.|++|+||||++..++...
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5679999999999999999998887553
No 192
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.64 E-value=0.0073 Score=52.56 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|+++.|.|+.|+|||||+.-++...
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999988877554
No 193
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.63 E-value=0.012 Score=58.55 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
...+.+++|..|+||||++.++|..+|.. |.+|+.++++..
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~-G~rVLlvD~D~~ 65 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEK-GLKVVIVSTDPA 65 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHS-SCCEEEEECCTT
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 34688899999999999999999999986 999999999984
No 194
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=95.63 E-value=0.012 Score=58.29 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=40.1
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCeEEEEeCCC
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMEN 336 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~vl~~s~E~ 336 (539)
.|+.++.-..-.+++++|..|+||||++.++|..+|. +.|.+|+.++++.
T Consensus 8 ~L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 8 TLESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP 58 (348)
T ss_dssp SSHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred hHHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3455554223369999999999999999999999993 3599999999993
No 195
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.61 E-value=0.0071 Score=58.59 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=29.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +++|+++.|.|++|+|||||+.-++.-.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4555544 9999999999999999999999887665
No 196
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.60 E-value=0.0069 Score=55.85 Aligned_cols=27 Identities=37% Similarity=0.514 Sum_probs=22.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++|++++|.||+|+|||||+..++-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 889999999999999999998876643
No 197
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=95.59 E-value=0.01 Score=58.49 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+++++|..|+||||++.++|..++.. |.+|+.++++-.
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~-g~~vllid~D~~ 55 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKV-RRSVLLLSTDPA 55 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTS-SSCEEEEECCSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 588999999999999999999999985 999999999943
No 198
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.58 E-value=0.014 Score=51.61 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=32.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.+++|+|++|+|||||+..++..+... |.+|..+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~-g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR-GIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc-CCceeEEeeCC
Confidence 578999999999999999998877654 88888887654
No 199
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.57 E-value=0.017 Score=55.19 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=34.1
Q ss_pred cEEEEE-cCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 298 ELTIVT-GVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 298 ~l~~i~-G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
.+++|+ +.+|+||||++.++|..+++. |.+|+++.+++..
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~-G~rVLLID~D~~~ 123 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQA-GYKTLIVDGDMRK 123 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCSSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 466666 458999999999999999985 9999999999753
No 200
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.57 E-value=0.014 Score=62.50 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+..+++++|.+|+||||++.++|..++.. |.+|++++++..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~-G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQ-GKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 34689999999999999999999999986 999999999974
No 201
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.56 E-value=0.012 Score=63.73 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=43.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLE 347 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~ 347 (539)
+....+++|.||||+|||+.+.+++.++..+ |.+||.++.--. ...+..|+..
T Consensus 202 l~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 202 LSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHHH
T ss_pred hcCCCceEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEcCchHHHHHHHHHHHh
Confidence 5555799999999999999999999998885 999999997744 4567777743
No 202
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.52 E-value=0.0084 Score=67.86 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=31.3
Q ss_pred HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHhCcEEEEEec
Q 009230 408 RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHHACHVWFVAH 459 (539)
Q Consensus 408 ~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~~i~vi~~~q 459 (539)
..++++|++|-.. .+.+.......+...|+.++++.++.+|+++|
T Consensus 866 a~~~sLlLLDEp~-------~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH 910 (1022)
T 2o8b_B 866 ATAHSLVLVDELG-------RGTATFDGTAIANAVVKELAETIKCRTLFSTH 910 (1022)
T ss_dssp CCTTCEEEEECTT-------TTSCHHHHHHHHHHHHHHHHHTSCCEEEEECC
T ss_pred CCCCcEEEEECCC-------CCCChHHHHHHHHHHHHHHHhcCCCEEEEEeC
Confidence 3578999999322 23344443444667777787777999999999
No 203
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.49 E-value=0.012 Score=53.29 Aligned_cols=38 Identities=11% Similarity=0.305 Sum_probs=32.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+..+..|+||||++.++|..++.+ |.+|+++.++..
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~-g~~vlliD~D~~ 41 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRS-GYNIAVVDTDPQ 41 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 34555889999999999999999985 999999998843
No 204
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.49 E-value=0.011 Score=52.73 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
|.+++|.|+||+||||++..++...-.+ |.+..+++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g~~~~~i~ 38 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE-GVNYKMVS 38 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CcceEEEe
Confidence 5689999999999999999998776442 54344555
No 205
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.48 E-value=0.0076 Score=54.43 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=23.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+++..-++|.||||+|||++++.++..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 5556678999999999999998887653
No 206
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.48 E-value=0.008 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
..+|.+++|+|+||+||||++..++...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999998887653
No 207
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.46 E-value=0.017 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=34.1
Q ss_pred CcEEEEEc-CCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 297 GELTIVTG-VPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 297 G~l~~i~G-~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+++|++ .+|+||||++.++|..++.. |.+|+++.+++.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~r 144 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQS-DQKVLFIDADLR 144 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 34666665 58999999999999999985 999999999984
No 208
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=95.43 E-value=0.027 Score=57.86 Aligned_cols=67 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHh-------cCCeEEEEeCCCCHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH-------AGWKFVLCSMENKVREHA 342 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~-------~g~~vl~~s~E~~~~~~~ 342 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++.+..+.+.. ++..++|....+..+++.
T Consensus 141 ~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~ 214 (510)
T 2ck3_A 141 SVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVA 214 (510)
T ss_dssp CCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHH
T ss_pred ccCccccccceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHH
Confidence 3445688999999999889999999999999999999988766666652 355678888887777653
No 209
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.41 E-value=0.016 Score=57.65 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
.-.++|+|.||+|||||+.+++..++.. |.+|+.++.+....
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~-g~kV~vi~~Dp~~~ 120 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIER-GHRVAVLAVDPSST 120 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT-TCCEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhC-CCceEEEecCCCCC
Confidence 3478899999999999999999988775 99999999885443
No 210
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.40 E-value=0.011 Score=52.06 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+|++++|.|++|+||||++..++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56899999999999999998887654
No 211
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.38 E-value=0.017 Score=53.68 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+.++..|+||||++.++|..++.+ |.+|+++.++..
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 42 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDR-GRKVLAVDGDLT 42 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCC
Confidence 45556789999999999999999986 999999999863
No 212
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.37 E-value=0.018 Score=54.43 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+.++..|+||||++.++|..++.. |.+|+++.++..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQL-GHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHT-TCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 55667899999999999999999986 999999999863
No 213
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=95.35 E-value=0.015 Score=57.25 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=36.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+.+++|..|+||||++.++|..++.. |.+|++++++..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~-G~rVllvD~D~~ 58 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKV-RSSVLLISTDPA 58 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTS-SSCEEEEECCTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 588899999999999999999999985 999999999976
No 214
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.35 E-value=0.012 Score=52.07 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHh------cCCeEEEEe
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCS 333 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~------~g~~vl~~s 333 (539)
+..++|.|+||+|||+++..++..+... .+.++++++
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 3467999999999999999998876542 156676664
No 215
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.31 E-value=0.011 Score=52.06 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+.+++|+|+||+||||++..++.. .+.+.+.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~----l~~~~~~~~~ 36 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV----LPEPWLAFGV 36 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH----SSSCEEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh----cCCCeEEecc
Confidence 568999999999999998877654 3555554443
No 216
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.30 E-value=0.01 Score=55.74 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=24.1
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.|+.+.- +.+|+++.|.|++|+||||++..++...
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555544 8999999999999999999998776543
No 217
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.29 E-value=0.017 Score=56.30 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+..-.++.|+|--|+||||.+.+++..+|.. |++|+.+.++-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~-GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL-GKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 4445799999999999999999999999996 99999999983
No 218
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.26 E-value=0.02 Score=52.12 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
.+|-+++|.|++|+||||++..++..+-.. +..|..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEee
Confidence 357799999999999999999999887654 78875443
No 219
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.24 E-value=0.019 Score=54.35 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=34.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
+.+..+..|+||||++.++|..++.. |.+|+++.++...
T Consensus 21 I~v~s~kGGvGKTT~a~nLA~~la~~-G~~VlliD~D~~~ 59 (262)
T 2ph1_A 21 IAVMSGKGGVGKSTVTALLAVHYARQ-GKKVGILDADFLG 59 (262)
T ss_dssp EEEECSSSCTTHHHHHHHHHHHHHHT-TCCEEEEECCSSC
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 55667889999999999999999986 9999999988654
No 220
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.23 E-value=0.019 Score=54.04 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=32.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+.+.++..|+||||++.++|..++.+ |.+|+++.++.
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~-g~~VlliD~D~ 41 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQK-GKKTVVIDFAI 41 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 45557889999999999999999985 99999999986
No 221
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.21 E-value=0.013 Score=52.34 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++.+++|.|+||+||||++..++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999888755
No 222
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.21 E-value=0.13 Score=52.77 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=41.3
Q ss_pred cCCCcEEEEEcCCCCChhH-HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 294 VLPGELTIVTGVPNSGKSE-WIDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~-~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
+..++++++.|+||+|||. +++.++.++... |.+++|++ |-..++..+.....|.+
T Consensus 16 l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-~~~~lvl~---Ptr~La~Q~~~~l~g~~ 72 (451)
T 2jlq_A 16 FRKKRLTIMDLHPGAGKTKRILPSIVREALLR-RLRTLILA---PTRVVAAEMEEALRGLP 72 (451)
T ss_dssp GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-TCCEEEEE---SSHHHHHHHHHHTTTSC
T ss_pred HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-CCcEEEEC---CCHHHHHHHHHHhcCce
Confidence 6667899999999999999 688877776664 88999998 33456655555444443
No 223
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.20 E-value=0.019 Score=67.03 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=25.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+.+.- +++|+.+.|.|++|+||||++.-++
T Consensus 1049 l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp BSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444433 9999999999999999999977655
No 224
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.20 E-value=0.025 Score=55.87 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=37.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
..+|..+.|.|+||+||||++..++...... |.+|.+++.+....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~-~~~v~v~~~d~~~~ 97 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE-GLKVAVIAVDPSSP 97 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEECCC--
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEEeecCCcC
Confidence 6778899999999999999999999887764 89999999886543
No 225
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.19 E-value=0.0096 Score=55.63 Aligned_cols=32 Identities=34% Similarity=0.487 Sum_probs=26.4
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555444 9999999999999999999987665
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.18 E-value=0.0087 Score=54.17 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+|++++|.|++|+||||++..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 478999999999999999998877543
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.17 E-value=0.023 Score=56.36 Aligned_cols=42 Identities=29% Similarity=0.428 Sum_probs=31.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
..+|++++|+|++|+||||++..++..+....+..++ +.|.+
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~--t~ed~ 161 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHIL--TIEDP 161 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEE--EEESS
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEE--EccCc
Confidence 5678899999999999999999887766553355554 44544
No 228
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.16 E-value=0.083 Score=58.48 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=29.2
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
++.+++-++|.|+||+|||+++..++.. .+.+.++++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~----l~~~~i~v~ 270 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLIN 270 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT----TTCEEEEEE
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH----cCCcEEEEE
Confidence 4788899999999999999998877543 366666555
No 229
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.16 E-value=0.17 Score=52.41 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=28.9
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..+..-++|.|+||+|||+++..++.. .+.+++++++
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~----~~~~fv~vn~ 271 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE----TGAFFFLING 271 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHH----CSSEEEEEEH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHH----hCCCEEEEEc
Confidence 4444456889999999999998877543 4788888773
No 230
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.13 E-value=0.014 Score=52.66 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=23.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.-+|++++|.||+|+||||++..++..
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999998887754
No 231
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.12 E-value=0.02 Score=55.01 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+.|+|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~-G~rVlliD~D~q 41 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEM-GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEEECSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 44557999999999999999999986 999999999854
No 232
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.11 E-value=0.06 Score=54.55 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=65.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHh-hCCCccccccCCCCCCCCHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKH-IKKPFFEANYGGSAERMTVEEF 371 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~-~~~~~~~i~~~~~~~~l~~~~~ 371 (539)
+..|.-+++.++||+|||.+.+-.+..... .+..++|+..--. ..++..++.... .++....+. +..+..+.
T Consensus 33 i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~-----g~~~~~~~ 106 (414)
T 3oiy_A 33 IVQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY-----SSMKKEEK 106 (414)
T ss_dssp HTTTCCEECCSCSSSSHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECC-----TTSCHHHH
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEE-----CCCChhhH
Confidence 445667889999999999966666566554 4788999886533 344544543321 233332222 23455444
Q ss_pred HHHHHHhhc--cceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEcccccc
Q 009230 372 EQGKAWLSN--TFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNEL 422 (539)
Q Consensus 372 ~~~~~~l~~--~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l 422 (539)
......+.. ..++| .|++.+...+.. .....+++||||-...+
T Consensus 107 ~~~~~~l~~~~~~Iiv-------~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~ 151 (414)
T 3oiy_A 107 EKFEKSFEEDDYHILV-------FSTQFVSKNREK-LSQKRFDFVFVDDVDAV 151 (414)
T ss_dssp HHHHHHHHHTCCSEEE-------EEHHHHHHCHHH-HTTCCCSEEEESCHHHH
T ss_pred HHHHHHhhcCCCCEEE-------ECHHHHHHHHHH-hccccccEEEEeChHhh
Confidence 333334433 22333 145555554443 33457999999966544
No 233
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.11 E-value=0.0077 Score=55.91 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=19.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+.+|+++.|.|++|+||||++..++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999988776
No 234
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.08 E-value=0.14 Score=53.44 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
..+++++|.||+||||++..++..+-.. +..+..|+.+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~-~~d~~v~s~D~ 73 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI-GVPTKVFNVGE 73 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeEEecccH
Confidence 3689999999999999999999877654 77888887553
No 235
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.08 E-value=0.044 Score=60.34 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+|++++|.|++|+|||||+.+++.-.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999999998754
No 236
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=95.08 E-value=0.018 Score=54.63 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
++.|+|..|+||||++.++|..++.. |.+|+++.++..
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~-G~~VlliD~D~q 40 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAM-GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEEECTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHC-CCcEEEEcCCCC
Confidence 34557999999999999999999975 999999998853
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.08 E-value=0.047 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEcCCCCChhHHHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a 322 (539)
++|.|++|+||||++..++..+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 88999999999999998887653
No 238
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=95.07 E-value=0.021 Score=57.22 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=32.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+.+|..|+||||++.++|..++.. |.+|+++.++
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~-g~rVlliD~D 181 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANM-GKKVFYLNIE 181 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHH-TCCEEEEECC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhC-CCCEEEEECC
Confidence 44455799999999999999999996 9999999999
No 239
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.07 E-value=0.01 Score=55.57 Aligned_cols=36 Identities=19% Similarity=0.105 Sum_probs=32.7
Q ss_pred EEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 301 IVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 301 ~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.|+|..|+||||++.++|..++.. |.+|+.+.++..
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 39 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMASD-YDKIYAVDGDPD 39 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTT-CSCEEEEEECTT
T ss_pred EEecCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 448999999999999999999986 999999999874
No 240
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.07 E-value=0.022 Score=54.75 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
+.+.++.+|+||||++.++|..+|.. |.+|+++.+++..
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~-G~rVLLID~D~~~ 133 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQT-NKRVLLIDCDMRK 133 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTT-TCCEEEEECCTTT
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhC-CCCEEEEeccCCC
Confidence 55555679999999999999999985 9999999999863
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.06 E-value=0.017 Score=50.46 Aligned_cols=27 Identities=41% Similarity=0.742 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
+++|.|+||+||||++..+ ...|.+++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-----~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-----KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-----HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-----HHCCCcEE
Confidence 7899999999999998877 22477754
No 242
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.06 E-value=0.15 Score=53.88 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHH---HHHHhcCCeEEEEeCCCC----HHHHHHHHHHHh
Q 009230 298 ELTIVTGVPNSGKSEWIDALIC---NINEHAGWKFVLCSMENK----VREHARKLLEKH 349 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~---~~a~~~g~~vl~~s~E~~----~~~~~~r~~~~~ 349 (539)
.++.|.|.+|+||||+|.+++. .....+-..++|++.... ...+...++...
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998885 122222356788877653 566666665543
No 243
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.06 E-value=0.012 Score=53.30 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHH----hcC-CeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINE----HAG-WKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~----~~g-~~vl~~s~E 335 (539)
-+++++|+||+|||+++..++...+. ..| .++.|..++
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 37899999999999999887766541 236 555555443
No 244
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.05 E-value=0.014 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+|.+++|.|+||+||||++..++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998888754
No 245
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.02 E-value=0.013 Score=53.19 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=28.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+|.++.|+|++|+||||++..++... ..+.+++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~-----~~~~~i~~D 54 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL-----PNCSVISQD 54 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS-----TTEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc-----CCcEEEeCC
Confidence 7889999999999999999987665321 046666655
No 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.00 E-value=0.011 Score=55.36 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.4
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 444444 99999999999999999999876653
No 247
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.98 E-value=0.012 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.396 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|++++|.|++|+||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999998864
No 248
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.97 E-value=0.021 Score=53.25 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=33.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+..+..|+||||++.++|..++...|.+|+++.++..
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 445567899999999999999998744999999999865
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.97 E-value=0.016 Score=50.73 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+++|.|+||+||||++..++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999998887654
No 250
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.97 E-value=0.029 Score=56.17 Aligned_cols=39 Identities=31% Similarity=0.356 Sum_probs=31.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
+.+|++++|.|++|+||||++..++..+.......++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 788999999999999999999998876654313566554
No 251
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.96 E-value=0.025 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++|.|++|+||||++..++..+.. .|.+|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEee
Confidence 6889999999999999999877655 388886543
No 252
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.96 E-value=0.0086 Score=54.72 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+|+++.|.|++|+|||||+.-++--
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 788999999999999999999888755
No 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.94 E-value=0.011 Score=54.82 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=26.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3555544 9999999999999999999987665
No 254
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.93 E-value=0.011 Score=56.29 Aligned_cols=33 Identities=36% Similarity=0.422 Sum_probs=26.8
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3454444 99999999999999999999876653
No 255
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.93 E-value=0.028 Score=51.04 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=31.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
..+|-+++|.|++|+||||++..++..+-.. +..+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~~~~~ 45 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEVKHLY 45 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEe
Confidence 3457799999999999999999999877654 77775444
No 256
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.92 E-value=0.027 Score=50.26 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=27.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++|.|++|+||||++..++..+... |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~-g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK-GYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 67899999999999999998876543 88877553
No 257
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.91 E-value=0.019 Score=55.84 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCeEEEEeCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSME 335 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~vl~~s~E 335 (539)
.+|+++.|.|++|+|||||+..++...-. ..+..+.+++.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 78899999999999999999877754420 124567777665
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.91 E-value=0.014 Score=53.18 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+|+++.|.|++|+||||++..++... +..+.|++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~----~~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL----GERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH----GGGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEecC
Confidence 578999999999999999988776542 2135666543
No 259
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.91 E-value=0.01 Score=55.88 Aligned_cols=32 Identities=28% Similarity=0.283 Sum_probs=26.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 444433 99999999999999999999876653
No 260
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.91 E-value=0.13 Score=52.58 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCChhHHH-HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 296 PGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~-~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
+|+.+++.|++|+|||..+ +.++..+.. .|.+++|+..- ..++..+.....+.+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt---~~La~Q~~~~~~~~~ 55 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPT---RVVASEMYEALRGEP 55 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESS---HHHHHHHHHHTTTSC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcH---HHHHHHHHHHhCCCe
Confidence 3678999999999999875 555545555 48899999843 445555444433443
No 261
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.90 E-value=0.11 Score=56.99 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=76.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC-CCHHHHHHHHHH-HhhCCCccccccCCCCCCCCHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME-NKVREHARKLLE-KHIKKPFFEANYGGSAERMTVEEF 371 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E-~~~~~~~~r~~~-~~~~~~~~~i~~~~~~~~l~~~~~ 371 (539)
+..|+-++++|+||+|||+.+...+.+.....|.+++|+..- .-..++..++.. ...|+....+. | ..+.++
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~-G----~~~~~~- 109 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMAT-G----DYDSKD- 109 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEEC-S----CSSCCC-
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEec-C----CCCccc-
Confidence 455889999999999999988665555444348899999865 335566666521 11244333222 1 111100
Q ss_pred HHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHH-HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Q 009230 372 EQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH 450 (539)
Q Consensus 372 ~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~ 450 (539)
.++....+++ .|++.+...++.-.. -.++++||||-...+.. ..+...+..++..++.
T Consensus 110 ----~~~~~~~Iiv-------~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-----~~r~~~~~~ll~~l~~----- 168 (720)
T 2zj8_A 110 ----EWLGKYDIII-------ATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS-----RDRGATLEVILAHMLG----- 168 (720)
T ss_dssp ----GGGGGCSEEE-------ECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-----TTTHHHHHHHHHHHBT-----
T ss_pred ----cccCCCCEEE-------ECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-----CcccHHHHHHHHHhhc-----
Confidence 1122333443 145555444433111 13578999996665532 1233445556665551
Q ss_pred CcEEEEEec
Q 009230 451 ACHVWFVAH 459 (539)
Q Consensus 451 ~i~vi~~~q 459 (539)
++.+|+++-
T Consensus 169 ~~~ii~lSA 177 (720)
T 2zj8_A 169 KAQIIGLSA 177 (720)
T ss_dssp TBEEEEEEC
T ss_pred CCeEEEEcC
Confidence 677777776
No 262
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=94.89 E-value=0.022 Score=58.42 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. ++..++|....+..+++.
T Consensus 154 ~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~-~dv~~V~~~IGeR~~Ev~ 219 (515)
T 2r9v_A 154 PVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG-QGVYCIYVAIGQKKSAIA 219 (515)
T ss_dssp CCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT-TTEEEEEEEESCCHHHHH
T ss_pred CCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCcHHHH
Confidence 445678999999999988999999999999999999998876666553 355667888777777653
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.89 E-value=0.014 Score=51.43 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
.+++|.|+||+||||++..++.. .....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~-----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK-----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh-----cCCcEEecH
Confidence 47899999999999998887752 233456664
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.88 E-value=0.013 Score=51.52 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|.+++|.|++|+||||++..++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999998877644
No 265
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.86 E-value=0.024 Score=51.75 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+..+..|+||||++.++|..++.. | +|+++.++..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~-g-~VlliD~D~q 39 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQ-G-ETLLIDGDPN 39 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTT-S-CEEEEEECTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhc-C-CEEEEECCCC
Confidence 45667899999999999999999986 9 9999998865
No 266
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.85 E-value=0.024 Score=58.16 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=52.9
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||++++++..+.+. ++..++|....+..+++.
T Consensus 141 ~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~ 206 (502)
T 2qe7_A 141 SVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG-QDVICIYVAIGQKQSTVA 206 (502)
T ss_dssp CCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS-CSEEEEEEEESCCHHHHH
T ss_pred CCCCccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc-CCcEEEEEECCCcchHHH
Confidence 344578899999999988999999999999999999998876666553 355667887777776553
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.83 E-value=0.014 Score=55.36 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=26.6
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++-
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 554444 99999999999999999999887654
No 268
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.79 E-value=0.036 Score=60.76 Aligned_cols=36 Identities=19% Similarity=0.316 Sum_probs=24.4
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
++.+..=+++.||||+|||.++..+|.. .+.+.+.+
T Consensus 507 g~~~~~gvLl~GPPGtGKT~lAkaiA~e----~~~~f~~v 542 (806)
T 3cf2_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANE----CQANFISI 542 (806)
T ss_dssp CCCCCSCCEEESSTTSSHHHHHHHHHHT----TTCEEEEC
T ss_pred CCCCCceEEEecCCCCCchHHHHHHHHH----hCCceEEe
Confidence 4333344789999999999987666544 46665533
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.79 E-value=0.018 Score=55.51 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=27.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
...+.+++|+|+||+||||++..++... +...+++|.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Confidence 3456799999999999999988876542 234566665
No 270
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.78 E-value=0.018 Score=54.35 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+++|+|+||+||||++..++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 37899999999999999988765
No 271
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=94.71 E-value=0.029 Score=57.43 Aligned_cols=66 Identities=18% Similarity=0.336 Sum_probs=52.7
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++++...+... .+..++|...-+...++.
T Consensus 141 ~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~-~dv~~V~~~IGeR~~ev~ 206 (513)
T 3oaa_A 141 SVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD-SGIKCIYVAIGQKASTIS 206 (513)
T ss_dssp CCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS-SSCEEEEEEESCCHHHHH
T ss_pred CcCcccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhcc-CCceEEEEEecCChHHHH
Confidence 445678899999999988999999999999999999998776666433 355677888887776543
No 272
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.71 E-value=0.021 Score=51.81 Aligned_cols=35 Identities=29% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
+|-+++|.|+||+||||++..++..+-.. | .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~-g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK-R-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT-S-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc-C-CEEEe
Confidence 36689999999999999999998775432 4 56443
No 273
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.69 E-value=0.033 Score=51.17 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+.+....+|+||||++.++|..++++ |.+|+++.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~-G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA-GYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEc
Confidence 44555679999999999999999986 99999975
No 274
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.68 E-value=0.039 Score=50.80 Aligned_cols=42 Identities=21% Similarity=0.171 Sum_probs=34.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCeEEEEeCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMEN 336 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~vl~~s~E~ 336 (539)
-.+|-+++|.|.+|+||||++..++..+.. . |.+|.+++-|-
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~-g~~v~~~treP 60 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIY-GVNNVVLTREP 60 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CGGGEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcc-CceeeEeeeCC
Confidence 346789999999999999999999988766 5 88888755553
No 275
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=94.65 E-value=0.025 Score=58.11 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=53.7
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
.....+.||+..+|-++-+.+|.=..|.|++|+|||++++++..+.+. ++..++|....+..+++.
T Consensus 142 ~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~ 207 (507)
T 1fx0_A 142 SVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQG-QNVICVYVAIGQKASSVA 207 (507)
T ss_dssp CCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCT-TTCEEEEEEESCCHHHHH
T ss_pred ccCCcccccceecccccccccCCEEEEecCCCCCccHHHHHHHHHhhc-CCcEEEEEEcCCCchHHH
Confidence 344568899999999988999999999999999999998876666554 366778888888777653
No 276
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.63 E-value=0.022 Score=50.52 Aligned_cols=36 Identities=28% Similarity=0.458 Sum_probs=27.1
Q ss_pred Cchhh--hhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 284 GWRAL--NELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 284 g~~~L--D~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+|..+ +.+.- |.+| +++|.|++|+||||++..+..-
T Consensus 11 nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 11 GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 44555 44333 8888 9999999999999998876543
No 277
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.62 E-value=0.041 Score=54.56 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVR 339 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~ 339 (539)
.+..+.|.|+||+|||||+..++...... +.+|.+++.+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~-~~~v~V~~~dp~~~ 115 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER-GHKLSVLAVDPSSC 115 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC---
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc-CCeEEEEeecCCCC
Confidence 36789999999999999999998776554 88999998876543
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.57 E-value=0.024 Score=50.27 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+..++|.|+||+||||++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998888754
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.55 E-value=0.026 Score=54.40 Aligned_cols=41 Identities=20% Similarity=0.020 Sum_probs=30.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC--CeEEEE-eCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG--WKFVLC-SME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g--~~vl~~-s~E 335 (539)
-.++.++.|+|++|+|||||+..++..+... | .+++.+ +.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~~~~~~iv~~D 71 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGGEKSIGYASID 71 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGGGSCEEEEEGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCCCceEEEeccc
Confidence 3456799999999999999999888776543 3 334444 776
No 280
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.53 E-value=0.022 Score=54.09 Aligned_cols=38 Identities=24% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
+.+..+..|+||||++.++|..++ + |.+|+++.++...
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~-g~~VlliD~D~~~ 67 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-K-NNKVLLIDMDTQA 67 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-T-TSCEEEEEECTTC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-C-CCCEEEEECCCCC
Confidence 445578899999999999999999 6 9999999999654
No 281
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=94.53 E-value=0.038 Score=59.00 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=43.8
Q ss_pred chhhhhhhc-c--CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 285 WRALNELYN-V--LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 285 ~~~LD~~~~-l--~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+.||.+++ + ..+.++++.|.+|+||||++.++|..++.. |.+|++++++..
T Consensus 312 ~~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~-g~~vllvD~Dp~ 366 (589)
T 1ihu_A 312 IPSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLTTSDPA 366 (589)
T ss_dssp CCCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESCCC
T ss_pred cchhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHHHC-CCcEEEEeCCCc
Confidence 467777776 3 344678889999999999999999999986 999999999965
No 282
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.52 E-value=0.024 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+++|.|+||+||||++..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998887754
No 283
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.47 E-value=0.03 Score=53.91 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+-++.|+|++|+||||++..++..+-.. +..+.+++++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~-~~~~~vI~~D~ 43 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE-GVKAVSIEGDA 43 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH-TCCEEEEEGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc-CCCeeEeecch
Confidence 3489999999999999999988765443 67788888763
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.46 E-value=0.025 Score=50.04 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=22.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
...+.+++|.|+||+||||++..++..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345678999999999999998887755
No 285
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.44 E-value=0.069 Score=49.52 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=37.8
Q ss_pred hhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCC----eEEEEeCCC-CHHHHHHHH
Q 009230 289 NELYN-VLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSMEN-KVREHARKL 345 (539)
Q Consensus 289 D~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~----~vl~~s~E~-~~~~~~~r~ 345 (539)
..++. +..|+.+++.|++|+|||+++..++.......+. .+++....- ...++..++
T Consensus 67 ~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~ 129 (235)
T 3llm_A 67 SEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERV 129 (235)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHH
Confidence 34445 7778999999999999998877777665543343 677665442 233444444
No 286
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.44 E-value=0.029 Score=49.96 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..+|..++|+|+||+||||++..++..
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345778999999999999998877643
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.44 E-value=0.018 Score=51.34 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|++++|.|++|+||||++..++...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999999988877554
No 288
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.43 E-value=0.088 Score=57.45 Aligned_cols=140 Identities=16% Similarity=0.142 Sum_probs=75.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC-CHHHHHHHHHHHh--hCCCccccccCCCCCCCCHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN-KVREHARKLLEKH--IKKPFFEANYGGSAERMTVEE 370 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~-~~~~~~~r~~~~~--~~~~~~~i~~~~~~~~l~~~~ 370 (539)
+..|+-++++|+||+|||+.+...+.+...+ +.+++|+..-- -..+...++ ... .|+....+. |. ... ..
T Consensus 37 i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~l~i~P~r~La~q~~~~~-~~~~~~g~~v~~~~-G~-~~~-~~-- 109 (702)
T 2p6r_A 37 VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESF-KKWEKIGLRIGIST-GD-YES-RD-- 109 (702)
T ss_dssp HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHH-TTTTTTTCCEEEEC-SS-CBC-CS--
T ss_pred HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCcEEEEeCcHHHHHHHHHHH-HHHHhcCCEEEEEe-CC-CCc-ch--
Confidence 4557889999999999999888777776664 78899887432 133344444 111 122222211 10 000 00
Q ss_pred HHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHH-HcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 371 FEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVL-RHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 371 ~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
..+....++|. |++.+...++.-.. -.++++||||-...+.. ..+...+..++..++.+ .
T Consensus 110 -----~~~~~~~Iiv~-------Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~-----~~r~~~~~~ll~~l~~~--~ 170 (702)
T 2p6r_A 110 -----EHLGDCDIIVT-------TSEKADSLIRNRASWIKAVSCLVVDEIHLLDS-----EKRGATLEILVTKMRRM--N 170 (702)
T ss_dssp -----SCSTTCSEEEE-------EHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC-----TTTHHHHHHHHHHHHHH--C
T ss_pred -----hhccCCCEEEE-------CHHHHHHHHHcChhHHhhcCEEEEeeeeecCC-----CCcccHHHHHHHHHHhc--C
Confidence 01122223331 34544444332111 23578999996665542 12334556666666643 2
Q ss_pred hCcEEEEEec
Q 009230 450 HACHVWFVAH 459 (539)
Q Consensus 450 ~~i~vi~~~q 459 (539)
.++.+|+++-
T Consensus 171 ~~~~ii~lSA 180 (702)
T 2p6r_A 171 KALRVIGLSA 180 (702)
T ss_dssp TTCEEEEEEC
T ss_pred cCceEEEECC
Confidence 3677888776
No 289
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.42 E-value=0.032 Score=53.80 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=33.4
Q ss_pred cEEEEE---cCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH
Q 009230 298 ELTIVT---GVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV 338 (539)
Q Consensus 298 ~l~~i~---G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~ 338 (539)
..++|+ +..|+||||++.++|..++.. |.+|+.+.++...
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~-G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKL-NLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHT-TCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 344455 599999999999999999985 9999999988653
No 290
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.41 E-value=0.023 Score=53.66 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=33.4
Q ss_pred cEEEE-EcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIV-TGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i-~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.++.| .+..|+||||++.++|..++.. |.+|+++.++..
T Consensus 7 ~vI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~ 46 (257)
T 1wcv_1 7 RRIALANQKGGVGKTTTAINLAAYLARL-GKRVLLVDLDPQ 46 (257)
T ss_dssp CEEEECCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEEEeCCCCchHHHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 44555 5788999999999999999986 999999999864
No 291
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.37 E-value=0.026 Score=57.27 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=29.6
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
..+|++++|+|++|+||||++..++..+... ...+.++
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ 201 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNILTV 201 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEE
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEe
Confidence 3688999999999999999998887655332 4566655
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.36 E-value=0.029 Score=50.18 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++.+++|.|+||+||||++..++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999998888754
No 293
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.34 E-value=0.093 Score=58.62 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhc------CCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~------g~~vl~~s~ 334 (539)
-++|.|+||+|||+++..++..+.... +.+++++++
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 468999999999999999998876521 567776654
No 294
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.34 E-value=0.024 Score=51.16 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+|-+++|.|++|+||||++..++..+ . |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~-g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--P-ANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--C-GGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--C-CCceEEEe
Confidence 57789999999999999988877654 1 56776655
No 295
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.33 E-value=0.054 Score=50.35 Aligned_cols=43 Identities=16% Similarity=0.380 Sum_probs=32.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
--+|.+++|.|++|+||||.+..++..+... |.+++.++-|..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~ 66 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTREPG 66 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCC
Confidence 3457899999999999999999999887764 888333444533
No 296
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.33 E-value=0.025 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..|..++|+|+||+|||++++.++..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999998887754
No 297
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.32 E-value=0.036 Score=53.26 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=32.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+.+..+..|+||||++.++|..++.. |.+|+++.++.
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~-G~~VlliD~D~ 43 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYG-GAKVAVIDLDL 43 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 44556789999999999999999986 99999999987
No 298
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.32 E-value=0.026 Score=56.38 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=25.2
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
++++|++++|.|+||+||||++..++..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3899999999999999999999988753
No 299
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.23 E-value=0.045 Score=50.06 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+|-+++|.|++|+||||.+..++..+... |.+|....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v~~~~ 41 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTR 41 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCccccc
Confidence 57899999999999999999998877654 88886443
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.20 E-value=0.029 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
..+++|.|++|+||||++..++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999988877653
No 301
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.16 E-value=0.042 Score=50.89 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=29.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEE
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVL 331 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~ 331 (539)
..+|.+++|.|++|+||||++..++..+.. |..|+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee
Confidence 668999999999999999999888876543 566653
No 302
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.14 E-value=0.021 Score=57.37 Aligned_cols=33 Identities=27% Similarity=0.408 Sum_probs=27.5
Q ss_pred hhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 287 ALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 287 ~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|+.+.- +.+|+++.|.|++|+||||++.-++-
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 4555544 99999999999999999999877663
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.14 E-value=0.035 Score=50.95 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+|-+++|.|+||+||||++..++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999998888754
No 304
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.11 E-value=0.26 Score=44.36 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s~E 335 (539)
.|.-++|.+++|+|||..+...+....... +.+++++..-
T Consensus 47 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~ 91 (216)
T 3b6e_A 47 EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNK 91 (216)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESS
T ss_pred cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECH
Confidence 345688999999999999888877665431 5688888643
No 305
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.10 E-value=0.026 Score=49.92 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
++.+++|.|.||+||||++..++.. .|.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~----l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER----LPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH----STTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh----cCCCEE
Confidence 3568999999999999998877644 366654
No 306
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.10 E-value=0.023 Score=54.64 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=25.7
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+.+.- +.+|+++.|.|++|+|||||+.-++
T Consensus 54 l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 444443 9999999999999999999977655
No 307
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.08 E-value=0.035 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++++++|.|++|+||||++..++..
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888754
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.02 E-value=0.039 Score=53.83 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=28.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHH-hcCCeEEEEeCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMEN 336 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~vl~~s~E~ 336 (539)
++.|+|++|+|||||+..++..... ..+..|.+++.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 8999999999999999877654431 1245788888874
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.00 E-value=0.046 Score=51.29 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++| ++|.|+||+|||+++..++... +.+.++++
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~----~~~~i~~~ 81 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITAS 81 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHh----CCCEEEee
Confidence 6677 8899999999999988777542 34555554
No 310
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.98 E-value=0.038 Score=53.50 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
...++|.|+||+|||+++..++...... +.+++++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~-~~~~~~~~~~ 84 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT-EEAMIRIDMT 84 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC-GGGEEEEEGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC-CcceEEeecc
Confidence 4578999999999999999988876553 6677777664
No 311
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.98 E-value=0.037 Score=64.59 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=25.3
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+++.- +++|+.+.|.|++|+||||++.-++
T Consensus 406 L~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp EEEEEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444433 8999999999999999999976554
No 312
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.96 E-value=0.064 Score=51.12 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=27.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+++| ++|.|+||+|||+++..++.. .+.+.++++.
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~----~~~~~i~i~g 77 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANE----SGLNFISVKG 77 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHH----TTCEEEEEET
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHH----cCCCEEEEEc
Confidence 6667 899999999999998877653 3556666664
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.94 E-value=0.016 Score=52.85 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=27.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++|.|++|+||||++..++..+-. .|.+|.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~-~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA-AGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE-EEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 6889999999999999998877654 366776553
No 314
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.93 E-value=0.033 Score=53.99 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=27.0
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
++|+++.+..|+++.|.|++|+|||||+..++
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 35666666678999999999999999998877
No 315
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=93.93 E-value=0.027 Score=56.10 Aligned_cols=38 Identities=8% Similarity=0.167 Sum_probs=33.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.+..+..|+||||++.++|..+|.. |.+|+++.++..
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~-G~rVLlID~D~q 41 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQ-GKRVLYVDCDPQ 41 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHT-TCCEEEEECCTT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhC-CCcEEEEEcCCC
Confidence 45556899999999999999999985 999999999965
No 316
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.89 E-value=0.066 Score=55.19 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=33.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCC-eEEEEeCCCCHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGW-KFVLCSMENKVR 339 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~-~vl~~s~E~~~~ 339 (539)
.++|.|+||+|||+++..++..+... |. +++.++.-..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~-~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIST-GETGIILAAPTHAAK 87 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCceEEEecCcHHHH
Confidence 99999999999999999999888875 65 788887665443
No 317
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.87 E-value=0.036 Score=56.54 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=51.4
Q ss_pred CccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc---CCeEEEEeCCCCHHHH
Q 009230 277 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCSMENKVREH 341 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~---g~~vl~~s~E~~~~~~ 341 (539)
....+.||+..+|-++-+.+|.=..|.|++|+|||+++.++|.+...++ +.-++|....+..+++
T Consensus 132 ~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev 199 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEA 199 (469)
T ss_dssp CCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHH
T ss_pred cccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHH
Confidence 4457899999999998899998888999999999999998887764321 2457777777776654
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.84 E-value=0.044 Score=49.37 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeE
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKF 329 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~v 329 (539)
+-+++|.|+||+||||++..++... |.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l----~~~~ 48 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL----GIPQ 48 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH----TCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCcE
Confidence 3589999999999999988877653 5554
No 319
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.84 E-value=0.021 Score=48.70 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
.+.-++|.|+||+|||+++..++...... +.+++ +.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~~v-~~~ 59 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGEFV-YRE 59 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSCCE-EEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCCEE-EEC
Confidence 34457899999999999998877654443 55655 443
No 320
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.82 E-value=0.029 Score=52.79 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=28.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..++.+++|.|+||+||||++..++... +..+.+++.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l----~~~~~~~~~D 66 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEF----QGNIVIIDGD 66 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHT----TTCCEEECGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhc----CCCcEEEecH
Confidence 4566899999999999999988877542 4445566655
No 321
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.81 E-value=0.059 Score=54.27 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHARK 344 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r 344 (539)
.+.-++|.|++|+|||+++..++..... .|.+++++..+.....+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~ 81 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPEREYKEMCRK 81 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSCCSHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCcCHHHHHHH
Confidence 4567889999999999999999888765 48899999888766655444
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.80 E-value=0.036 Score=54.17 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=26.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
-+++.+++|.|++|+|||+++..+|.. .+.-++|.+
T Consensus 37 ~~~~~lIvI~GPTgsGKTtLa~~LA~~------l~~eiIs~D 72 (339)
T 3a8t_A 37 HRKEKLLVLMGATGTGKSRLSIDLAAH------FPLEVINSD 72 (339)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHTT------SCEEEEECC
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHH------CCCcEEccc
Confidence 345679999999999999998877743 345566765
No 323
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.79 E-value=0.041 Score=49.33 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.++.+++|.|+||+||||++..++..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 334568999999999999998887765
No 324
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.79 E-value=0.12 Score=53.68 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=51.9
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 343 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~ 343 (539)
.....+.||+..+|-++-+.+|.-..|.|++|+|||+++.+++.+. +..-++|...-+..+++..
T Consensus 211 ~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~---~~~v~V~~~iGER~~Ev~e 275 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS---DVDLVVYVGCGERGNEMTD 275 (600)
T ss_dssp CCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHH
T ss_pred CCCceecccchhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHH
Confidence 3446788999999999889999999999999999999999887552 2345677777777776543
No 325
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.75 E-value=0.063 Score=56.92 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=35.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+..+.+++|.|+||+|||+++..++..+... |.+|++.+.-..
T Consensus 201 ~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~-g~~Vl~~ApT~~ 243 (574)
T 3e1s_A 201 LAGHRLVVLTGGPGTGKSTTTKAVADLAESL-GLEVGLCAPTGK 243 (574)
T ss_dssp HTTCSEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEEESSHH
T ss_pred HHhCCEEEEEcCCCCCHHHHHHHHHHHHHhc-CCeEEEecCcHH
Confidence 3346799999999999999999998777664 999998876443
No 326
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.70 E-value=0.028 Score=52.80 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.0
Q ss_pred hhhhhhc-cCC---CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 287 ALNELYN-VLP---GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 287 ~LD~~~~-l~~---G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|+++.- +.+ |+.++|.|++|+||||++..++..
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3454443 666 999999999999999998887754
No 327
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.66 E-value=0.025 Score=56.39 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|++++|.|++|+||||++.-++...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999999988776543
No 328
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.64 E-value=0.041 Score=51.74 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..+|.++.|.|++|+||||++..++..
T Consensus 24 ~~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 24 TAIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999998877644
No 329
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.61 E-value=0.047 Score=48.90 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAG 326 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g 326 (539)
|+.+.|.|++|+||||++.-++.... ..|
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 67899999999999999999887766 446
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.61 E-value=0.052 Score=49.73 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=23.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+....+++|.|+||+||||.+..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 666679999999999999998877754
No 331
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.59 E-value=0.043 Score=51.88 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
+.-++|.|+||+|||+++..++...... +.+++++++..-
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~-~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRW-QGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTT-TSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCcc-CCCeEEEecCCC
Confidence 3467899999999999998887665442 678888876543
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.57 E-value=0.043 Score=48.20 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++|.|+||+||||++..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999998888754
No 333
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.55 E-value=0.039 Score=48.92 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeE
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKF 329 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~v 329 (539)
.+++|+|+||+||||++..++... |.++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----g~~~ 30 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----GVGL 30 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----TCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----CCCE
Confidence 358899999999999988877542 6554
No 334
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.55 E-value=0.014 Score=56.57 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=26.5
Q ss_pred hhhhhccCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
++.++.+.+|+.+.|.|+||+|||||+..++-
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 44555577899999999999999999887753
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.55 E-value=0.047 Score=49.12 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+++|.|++|+||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999998887653
No 336
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.53 E-value=0.039 Score=55.84 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=26.2
Q ss_pred hhhhhc-cCCCcE--EEEEcCCCCChhHHHHHHHH
Q 009230 288 LNELYN-VLPGEL--TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 288 LD~~~~-l~~G~l--~~i~G~~G~GKT~~~~~la~ 319 (539)
|+.+.- +.+|++ +.|.|++|+|||||+..++-
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 665554 999999 99999999999999887653
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.51 E-value=0.047 Score=51.30 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHh----cCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEH----AGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~----~g~~vl~~s~E 335 (539)
-++.|+|++|+||||++..++..+-.. .+..+++++++
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 378999999999999998887653211 13457777766
No 338
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.50 E-value=0.036 Score=51.01 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
..++|.|++|+|||+++..++.....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 38899999999999999998876543
No 339
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.49 E-value=1.3 Score=46.57 Aligned_cols=144 Identities=9% Similarity=-0.011 Sum_probs=70.7
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcC------CeEEEEeCCCC-HHHHHHHHHHH---hhCCC---ccccccCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAG------WKFVLCSMENK-VREHARKLLEK---HIKKP---FFEANYGGS 362 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g------~~vl~~s~E~~-~~~~~~r~~~~---~~~~~---~~~i~~~~~ 362 (539)
.|.-+++.++||+|||...+-.+.+.+...+ .+++|++.--. ..++..++... ..+.. ...+. +
T Consensus 110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-g-- 186 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV-G-- 186 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEEC-T--
T ss_pred CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEE-C--
Confidence 4678899999999999754443444333312 37888875422 23343333221 11111 11111 1
Q ss_pred CCCCCHHHHHHHHHHh-hcc-ceeEeecCCCCCCHHHHHHHHHHHH--HHcCCcEEEEccccccccCCCCCCCHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWL-SNT-FSLIRCENDSLPSIKWVLDLAKAAV--LRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l-~~~-~~~i~~~~~~~~~~~~i~~~i~~~~--~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~ 438 (539)
..+. ......+ ... .++| .|++.+...+.... .-..+++||||-...+... .-...+..
T Consensus 187 --~~~~---~~~~~~~~~~~~~Iiv-------~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----~f~~~~~~ 249 (563)
T 3i5x_A 187 --GTDF---RAAMNKMNKLRPNIVI-------ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-----GFRDDLET 249 (563)
T ss_dssp --TSCH---HHHHHHHHHHCCSEEE-------ECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-----TTHHHHHH
T ss_pred --CcCH---HHHHHHHhcCCCCEEE-------ECcHHHHHHHHhccccccccceEEEEeCHHHHhcc-----chHHHHHH
Confidence 1121 1111122 112 2333 14566665555432 2245899999966665532 12334445
Q ss_pred HHHHHHHHHHH--hCcEEEEEec
Q 009230 439 MLTMVKRFAQH--HACHVWFVAH 459 (539)
Q Consensus 439 ~~~~Lk~lA~~--~~i~vi~~~q 459 (539)
++..+...... .++.+++++-
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SA 272 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSA 272 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEES
T ss_pred HHHhhhhccccCccCceEEEEEc
Confidence 55555433221 2677888876
No 340
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.48 E-value=0.044 Score=55.63 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCC----eEEEEeCCCCHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGW----KFVLCSMENKVREH 341 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~----~vl~~s~E~~~~~~ 341 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+|+.+... ++. -++|...-+..+++
T Consensus 130 ~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~-~~d~~~~~~V~~~iGeR~~Ev 198 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATV-LDSSDDFAVVFAAIGITFEEA 198 (465)
T ss_dssp CCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBC-SSCSSCEEEEEEEEEECHHHH
T ss_pred CcccccccCceEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHh-ccCCCceEEEEEEecCCcHHH
Confidence 344568899999999988889988889999999999999887765432 122 67777777776655
No 341
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.47 E-value=0.33 Score=58.07 Aligned_cols=143 Identities=11% Similarity=0.046 Sum_probs=78.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH-hcCCeEEEEeCCCC-HHHHHHHHHHHh---hCCCccccccCCCCCCCCH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE-HAGWKFVLCSMENK-VREHARKLLEKH---IKKPFFEANYGGSAERMTV 368 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-~~g~~vl~~s~E~~-~~~~~~r~~~~~---~~~~~~~i~~~~~~~~l~~ 368 (539)
+..++-+++++|||+|||..+.-.+.+... ..+.+++|++.--. ..+....+.... .|+....+ .| ..+.
T Consensus 939 ~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~l-tG----d~~~ 1013 (1724)
T 4f92_B 939 YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLL-TG----ETST 1013 (1724)
T ss_dssp HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEEC-CS----CHHH
T ss_pred hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEE-EC----CCCc
Confidence 456778999999999999866555544443 34678999976422 223333433322 22222211 11 1111
Q ss_pred HHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHH---HHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHH
Q 009230 369 EEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKR 445 (539)
Q Consensus 369 ~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~---~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~ 445 (539)
+ ...+....++|. |++.+...++.. ..-.++++||||... ++.. .+...+..++..|+.
T Consensus 1014 -~----~~~~~~~~IiV~-------TPEkld~llr~~~~~~~l~~v~lvViDE~H-~l~d-----~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1014 -D----LKLLGKGNIIIS-------TPEKWDILSRRWKQRKNVQNINLFVVDEVH-LIGG-----ENGPVLEVICSRMRY 1075 (1724)
T ss_dssp -H----HHHHHHCSEEEE-------CHHHHHHHHTTTTTCHHHHSCSEEEECCGG-GGGS-----TTHHHHHHHHHHHHH
T ss_pred -c----hhhcCCCCEEEE-------CHHHHHHHHhCcccccccceeeEEEeechh-hcCC-----CCCccHHHHHHHHHH
Confidence 1 112233334441 445443333321 112468999999665 4422 234556778888888
Q ss_pred HHHHh--CcEEEEEec
Q 009230 446 FAQHH--ACHVWFVAH 459 (539)
Q Consensus 446 lA~~~--~i~vi~~~q 459 (539)
++... ++-+|++|-
T Consensus 1076 i~~~~~~~~riI~lSA 1091 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSS 1091 (1724)
T ss_dssp HHHTTSSCCEEEEEES
T ss_pred HHhhcCCCceEEEEeC
Confidence 77654 677888876
No 342
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.40 E-value=0.37 Score=45.31 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHh------cCCeEEEEeCCCC-HHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEH------AGWKFVLCSMENK-VREHARKLL 346 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~------~g~~vl~~s~E~~-~~~~~~r~~ 346 (539)
..|.-+++.|++|+|||..++-.+...+.. .+..++|+..--. ..++..++.
T Consensus 89 ~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~ 147 (262)
T 3ly5_A 89 LEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147 (262)
T ss_dssp HHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred hCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 334557899999999997654444443332 3777888875322 334444443
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.34 E-value=0.051 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+++|.|+||+||||++..++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999998877654
No 344
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=93.31 E-value=0.12 Score=53.53 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=52.0
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHAR 343 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~~ 343 (539)
.....+.||+..+|-++-+.+|.-..|.|++|+|||+++.+++.+. +..-++|...-+..+++..
T Consensus 200 ~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~---~~~v~V~~~iGER~~Ev~e 264 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWS---NADVVVYVGSGERGNEMTD 264 (578)
T ss_dssp CSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHS---SCSEEEEEEEEECHHHHHH
T ss_pred cCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhcc---CCCEEEEEEecccHHHHHH
Confidence 3446788999999999889999999999999999999999887552 2445677777777776543
No 345
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.30 E-value=0.11 Score=47.30 Aligned_cols=38 Identities=13% Similarity=0.355 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCC-eEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGW-KFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~-~vl~~s~E 335 (539)
+|-+++|.|++|+||||.+..++..+... |. .| .++-|
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v-~~~re 40 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL-GIRDM-VFTRE 40 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCE-EEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcc-eeeeC
Confidence 47899999999999999999998877664 77 55 44445
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.28 E-value=0.047 Score=47.72 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+++|.|+||+||||++..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999998887754
No 347
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.049 Score=56.03 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=29.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEE
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFV 330 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl 330 (539)
+.+|+.+.|.|++|+|||||+.-++--.....| .++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~ 172 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLY 172 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEE
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEE
Confidence 889999999999999999998887755444335 3344
No 348
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.24 E-value=0.034 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.4
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
++|.|+||+|||+++..++..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999877654
No 349
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.21 E-value=0.047 Score=55.36 Aligned_cols=66 Identities=15% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHh----------cCCeEEEEeCCCCHHHH
Q 009230 276 GDEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEH----------AGWKFVLCSMENKVREH 341 (539)
Q Consensus 276 ~~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~----------~g~~vl~~s~E~~~~~~ 341 (539)
.....+.||+..+|-++-+.+|+=..|.|++|+|||+++.+|+.+...+ .+.-++|...-+..+++
T Consensus 126 ~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev 201 (464)
T 3gqb_B 126 KPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQREL 201 (464)
T ss_dssp CCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHH
T ss_pred CccccccCcceeeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHH
Confidence 4456789999999999889999888899999999999998887654321 11267777777776655
No 350
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.19 E-value=0.083 Score=49.62 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=24.5
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
++|.|+||+|||+++..++... +.++++++.
T Consensus 48 vll~G~~GtGKT~la~~la~~~----~~~~~~i~~ 78 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEA----KVPFFTISG 78 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH----TCCEEEECS
T ss_pred EEEECcCCCCHHHHHHHHHHHc----CCCEEEEeH
Confidence 8899999999999998887542 567766653
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.18 E-value=0.058 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++|.|+||+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999998887654
No 352
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.14 E-value=0.045 Score=57.61 Aligned_cols=41 Identities=27% Similarity=0.268 Sum_probs=32.3
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+.+|+++.|.|++|+||||++..++..+-...|..+.++..
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 67899999999999999999998887765432346666654
No 353
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.10 E-value=0.092 Score=48.44 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=29.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhc---CCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHA---GWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~---g~~vl~~s 333 (539)
..+|-+++|.|++|+||||.+..++..+...+ |.+|.+..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 56788999999999999999999987775532 78886543
No 354
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.09 E-value=0.044 Score=54.05 Aligned_cols=29 Identities=38% Similarity=0.469 Sum_probs=24.4
Q ss_pred cCCCcE--EEEEcCCCCChhHHHHHHHHHHH
Q 009230 294 VLPGEL--TIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 294 l~~G~l--~~i~G~~G~GKT~~~~~la~~~a 322 (539)
+..|++ +++.|+||+|||+++..++..+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 455666 89999999999999999987764
No 355
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.11 Score=57.22 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH-HHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHARKLLE 347 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~-~~~~~r~~~ 347 (539)
.+.+++|.|+||+|||+.+..++..+....+.+|++++.-..+ .++..|+..
T Consensus 374 ~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 374 QRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 3569999999999999999999888776448899999877554 567777754
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.08 E-value=0.057 Score=49.75 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.7
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++-+++|.|+||+||||++..++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999998877654
No 357
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.08 E-value=0.16 Score=49.81 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+++|.|++|+|||+++.+++... +.+++|+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~----~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL----NLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc----CCCEEEEEch
Confidence 489999999999999999887653 3457899876
No 358
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.06 E-value=0.33 Score=55.53 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=66.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHh-hCCCccccccCCCCCCCCHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKH-IKKPFFEANYGGSAERMTVEEF 371 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~-~~~~~~~i~~~~~~~~l~~~~~ 371 (539)
+..|.-+++.|+||+|||.+.+-.+...+. .|..+++++.--. ..++..++.... .++....+. + ..+..+.
T Consensus 90 il~g~dvlv~ApTGSGKTl~~l~~il~~~~-~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~-G----g~~~~er 163 (1104)
T 4ddu_A 90 IVQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFY-S----SMKKEEK 163 (1104)
T ss_dssp HTTTCCEEECCSTTCCHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEEC-T----TCCTTHH
T ss_pred HHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEe-C----CCCHHHH
Confidence 445667889999999999987777777665 4888999986633 344555543311 122222221 2 3333233
Q ss_pred HHHHHHhhcc-c-eeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccc
Q 009230 372 EQGKAWLSNT-F-SLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 372 ~~~~~~l~~~-~-~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
......+... . ++| .|+..+.+.+.. ....++++||||-...+.
T Consensus 164 ~~~~~~l~~g~~~IlV-------~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~ 209 (1104)
T 4ddu_A 164 EKFEKSFEEDDYHILV-------FSTQFVSKNREK-LSQKRFDFVFVDDVDAVL 209 (1104)
T ss_dssp HHHHHHHHTSCCSEEE-------EEHHHHHHSHHH-HHTSCCSEEEESCHHHHT
T ss_pred HHHHHHHhCCCCCEEE-------ECHHHHHHHHHh-hcccCcCEEEEeCCCccc
Confidence 3333344432 2 333 135555554443 344679999999665544
No 359
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.06 E-value=0.06 Score=47.34 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+.|.|++|+||||++.-++...... |.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~-g~~~G~I~~d 39 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER-GLRVAVVKRH 39 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT-TCCEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc-CCceEEEEEc
Confidence 468899999999999999888776653 6666666554
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.04 E-value=0.069 Score=49.87 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++-+++|.|+||+||||++..++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999998887754
No 361
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.01 E-value=0.051 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+++|+||||+||||++..+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999998776644
No 362
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.01 E-value=0.068 Score=46.50 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
..++|.|.+|+||||++..++.. .|.+++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~----lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA----LKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH----HTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHH----hCCCEE
Confidence 47889999999999998877654 366654
No 363
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.00 E-value=0.058 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+-+++|.|+||+||||++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998887755
No 364
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.98 E-value=0.052 Score=53.19 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+++|+|+||+|||||+..++..+ + +.++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l----~--~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF----N--GEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT----T--EEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc----C--Cceeccc
Confidence 388999999999999988877542 3 5566765
No 365
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.97 E-value=0.024 Score=55.73 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.+|++++|.|++|+||||++.-++...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999999987766543
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.95 E-value=0.069 Score=48.99 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+..+.|.|++|+||||++..++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998877654
No 367
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.89 E-value=0.043 Score=53.18 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=25.9
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.+++++.+..|+++.|.|++|+||||++..++
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 35566665678999999999999999977665
No 368
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.88 E-value=0.052 Score=53.69 Aligned_cols=31 Identities=35% Similarity=0.617 Sum_probs=24.2
Q ss_pred hhhhhccCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYNVLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
++.+....+|+++.|.|+||+|||||+..++
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 3444334479999999999999999987665
No 369
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.86 E-value=0.072 Score=46.26 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
.++|.|.+|+||||++..++... |.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l----~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL----NIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH----TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh----CCCEE
Confidence 47899999999999988877542 55543
No 370
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.84 E-value=0.074 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+++|.|++|+||||++..++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999998877644
No 371
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.83 E-value=0.93 Score=48.00 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=69.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhc------CCeEEEEeCCCC-HHHHHHHHHHHh---hCCC---ccccccCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHA------GWKFVLCSMENK-VREHARKLLEKH---IKKP---FFEANYGGS 362 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~------g~~vl~~s~E~~-~~~~~~r~~~~~---~~~~---~~~i~~~~~ 362 (539)
.|.-+++.++||+|||...+-.+...+... +.++++++.--. ..++..++.... .+.. ...+. +
T Consensus 59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-g-- 135 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV-G-- 135 (579)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEEC-T--
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEE-C--
Confidence 467788999999999974443344433321 247888875422 233443333221 1111 11111 1
Q ss_pred CCCCCHHHHHHHHHHhhc-c-ceeEeecCCCCCCHHHHHHHHHHH--HHHcCCcEEEEccccccccCCCCCCCHHHHHHH
Q 009230 363 AERMTVEEFEQGKAWLSN-T-FSLIRCENDSLPSIKWVLDLAKAA--VLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQ 438 (539)
Q Consensus 363 ~~~l~~~~~~~~~~~l~~-~-~~~i~~~~~~~~~~~~i~~~i~~~--~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~ 438 (539)
..+ +......+.. . .++| .|++.+...+... .....+++||||-...+... .-...+..
T Consensus 136 --g~~---~~~~~~~l~~~~~~IlV-------~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-----gf~~~~~~ 198 (579)
T 3sqw_A 136 --GTD---FRAAMNKMNKLRPNIVI-------ATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-----GFRDDLET 198 (579)
T ss_dssp --TSC---HHHHHHHHHHHCCSEEE-------ECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-----TTHHHHHH
T ss_pred --Ccc---HHHHHHHHhcCCCCEEE-------ECHHHHHHHHHhccccccccCCEEEEEChHHhhcC-----CCHHHHHH
Confidence 111 1111122211 2 2333 1456666555543 12246899999966665432 12233444
Q ss_pred HHHHHHHHHHH--hCcEEEEEec
Q 009230 439 MLTMVKRFAQH--HACHVWFVAH 459 (539)
Q Consensus 439 ~~~~Lk~lA~~--~~i~vi~~~q 459 (539)
++..+...... .++.+++++-
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SA 221 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSA 221 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEES
T ss_pred HHHHhhhhhcccccCceEEEEec
Confidence 44444332211 1678888876
No 372
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.82 E-value=0.061 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+.|.|++|+|||||+.-++-..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999998877554
No 373
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.78 E-value=0.063 Score=51.85 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+++|+||||+|||+++..++.. .+..++|.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~------~~~~iis~D 35 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR------LNGEVISGD 35 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT------TTEEEEECC
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh------CccceeecC
Confidence 358899999999999998877643 334556654
No 374
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.78 E-value=0.09 Score=56.48 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=39.7
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH-HHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHARKLL 346 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~-~~~~~r~~ 346 (539)
+.+++|.|+||+|||+++..++..+....+.+|++++.-..+ .++..|+.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 569999999999999999999988776347899998876544 45666654
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.76 E-value=0.068 Score=48.90 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
|-.++|.|+||+||||++..++... |.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l----~~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY----GLAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH----CCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh----CceEE
Confidence 4578999999999999988887653 55544
No 376
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.74 E-value=0.073 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-++.|.|+||+||||++..++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999998877655
No 377
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.69 E-value=0.077 Score=48.21 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++|.|+||+||||.+..++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999998877754
No 378
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.63 E-value=0.09 Score=53.04 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=33.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHH-----hcCCeEEEEeCCCCH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMENKV 338 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~-----~~g~~vl~~s~E~~~ 338 (539)
+.+..+..|+||||++.++|..++. ..|.+|+++.++...
T Consensus 111 Iav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~ 155 (398)
T 3ez2_A 111 IFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS 155 (398)
T ss_dssp EEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC
Confidence 4555588999999999999999985 349999999999643
No 379
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.63 E-value=0.07 Score=51.42 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..+++|+||||+|||+++..++.. .+..++|.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~------~~~~iis~D 42 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI------LPVELISVD 42 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH------SCEEEEECC
T ss_pred CcEEEEECCCccCHHHHHHHHHHh------CCCcEEecc
Confidence 358999999999999998887644 234456655
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.63 E-value=0.067 Score=48.74 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.++|.|+||+||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999998877643
No 381
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.62 E-value=0.1 Score=50.19 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.-++|.|+||+|||+++..++... +.++++++..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l----~~~~~~i~~~ 84 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEAT 84 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH----TCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh----CCCEEEEcch
Confidence 457799999999999999887653 5677777653
No 382
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.58 E-value=0.099 Score=49.59 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
..-++|.|+||+|||+++..++.. .+.+++.++
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~----~~~~~~~i~ 96 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE----SNFPFIKIC 96 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----HTCSEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH----hCCCEEEEe
Confidence 357889999999999999888765 266766664
No 383
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.48 E-value=0.11 Score=53.84 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=49.2
Q ss_pred CccccccCchhhhhhhccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 277 DEFGISTGWRALNELYNVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 277 ~~~gi~tg~~~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
....+.||+..+|-++-+.+|.-..|.|++|+|||+++.+++.+ + +..-++|...-+..+++.
T Consensus 207 ~~epl~TGirvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~-~--~~~~~V~~~iGER~~Ev~ 269 (588)
T 3mfy_A 207 PEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKW-S--DAQVVIYIGCGERGNEMT 269 (588)
T ss_dssp SCSEECCSCHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHH-S--SCSEEEEEECCSSSSHHH
T ss_pred CCcccccCcchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhc-c--CCCEEEEEEecccHHHHH
Confidence 34568899999999988999999999999999999999887644 1 234566777666665543
No 384
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.45 E-value=0.15 Score=49.74 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.+++++|+||+|||+++..++.. .+.++++++....
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~----l~~~~~~i~~~~~ 84 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHD----VNADMMFVNGSDC 84 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHH----TTEEEEEEETTTC
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH----hCCCEEEEccccc
Confidence 48899999999999998887654 3788999987654
No 385
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.44 E-value=0.096 Score=48.45 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
++-.++|.|+||+||||++..++..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999998888765
No 386
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.43 E-value=0.083 Score=48.55 Aligned_cols=23 Identities=17% Similarity=0.105 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+++|.|+||+||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988887653
No 387
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.42 E-value=0.072 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~ 319 (539)
++.|.|++|+||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887754
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.40 E-value=0.087 Score=45.07 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=21.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|.+| +++|.|++|+|||+++-.+..
T Consensus 21 f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 21 FKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 5555 999999999999999876654
No 389
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.38 E-value=0.077 Score=51.60 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
.+++|+|+||+||||++..++.. .+ ..+++.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~----l~--~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA----LP--CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH----SC--EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHH----cC--CcEEecc
Confidence 48999999999999998877644 23 4556654
No 390
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=92.38 E-value=0.46 Score=42.53 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=32.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHH-----hcCCeEEEEeCCC-CHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMEN-KVREHARKLLE 347 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~-----~~g~~vl~~s~E~-~~~~~~~r~~~ 347 (539)
+..|.-+++.+++|+|||..+...+..... ..+.+++|+..-- -..++..++..
T Consensus 35 ~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 94 (207)
T 2gxq_A 35 ALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTA 94 (207)
T ss_dssp HHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 334566889999999999765554444432 1356788886542 23444444433
No 391
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.28 E-value=0.047 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+..|+.++|+|++|+||||++..++..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 7889999999999999999988766443
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.27 E-value=0.052 Score=50.20 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=27.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
..+|+++.|.|++|+||||++..++.. +..|.+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~ 51 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLT 51 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEEC
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEe
Confidence 678999999999999999998776543 44565543
No 393
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.26 E-value=0.073 Score=47.99 Aligned_cols=29 Identities=21% Similarity=0.033 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEE
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLC 332 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~ 332 (539)
.+.|.|++|+||||++..++. .|.++++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-----~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-----LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-----TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-----CCCEEEEc
Confidence 578999999999999887764 26666654
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.18 E-value=0.092 Score=50.04 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++| ++|.|+||+|||+++..++... +.+.++++
T Consensus 72 ~~~g--vll~Gp~GtGKTtl~~~i~~~~----~~~~i~~~ 105 (278)
T 1iy2_A 72 IPKG--VLLVGPPGVGKTHLARAVAGEA----RVPFITAS 105 (278)
T ss_dssp CCCE--EEEECCTTSSHHHHHHHHHHHT----TCCEEEEE
T ss_pred CCCe--EEEECCCcChHHHHHHHHHHHc----CCCEEEec
Confidence 6677 8899999999999988777542 34555554
No 395
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=92.18 E-value=0.18 Score=51.84 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=40.4
Q ss_pred cCCCcEEEEEcCCCCChhHH-HHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEW-IDALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKKP 353 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~-~~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~~ 353 (539)
+..|..+++.|+||+|||+. ++.++..+.. .+.+++|++. -..++..+.....|.+
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~P---tr~La~Q~~~~l~g~~ 74 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAP---TRVVAAEMAEALRGLP 74 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEEC---SHHHHHHHHHHTTTSC
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECc---hHHHHHHHHHHhcCce
Confidence 77889999999999999985 6666666555 4888999983 3445555554444544
No 396
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.16 E-value=1.5 Score=39.57 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHh--cCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~--~g~~vl~~s~E 335 (539)
|.-+++.+++|+|||..++-.+...... .+.+++|+..-
T Consensus 51 ~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 51 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 4458899999999997766555554332 13478888743
No 397
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.15 E-value=0.047 Score=49.32 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=25.8
Q ss_pred hhhhhhccCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 287 ALNELYNVLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 287 ~LD~~~~l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
.++. +.+.+|..++|.|++|+|||||+..++
T Consensus 17 ~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 17 DIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 4444 458899999999999999999987765
No 398
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.09 E-value=0.18 Score=51.61 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=28.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..+..-++|.|+||+|||+++..++..+ .+.++++++..
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~---~~~~~~~v~~~ 202 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA---NNSTFFSISSS 202 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC---CSSEEEEECCC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc---CCCCEEEEeHH
Confidence 3444578899999999999998887653 26677666543
No 399
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.08 E-value=0.11 Score=55.13 Aligned_cols=37 Identities=24% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+|.+++|.|.||+||||++..++..+... |.+++++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~-G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH-GIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEec
Confidence 56799999999999999999999877654 88877764
No 400
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.02 E-value=0.1 Score=46.86 Aligned_cols=30 Identities=30% Similarity=0.216 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
..++.|+|++||||||++..++.. .|.+++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~----lg~~vi 41 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK----YGAHVV 41 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----HCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh----cCCEEE
Confidence 357889999999999998877754 266654
No 401
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.01 E-value=0.096 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+++|+||||+|||+++..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 488999999999999999988664
No 402
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=92.00 E-value=0.1 Score=51.06 Aligned_cols=90 Identities=11% Similarity=0.081 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHHcC--CcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHHh--CcEEEEEecCCCCCCCCCC
Q 009230 394 SIKWVLDLAKAAVLRHG--VRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQHH--ACHVWFVAHPRQLHNWVGE 469 (539)
Q Consensus 394 ~~~~i~~~i~~~~~~~~--~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~~--~i~vi~~~q~r~~~~~~~~ 469 (539)
....++..+...+.... +-.|+|=|+..-.-... .......+-.++..||.|.+.+ +++++++...--.
T Consensus 199 ~y~~lL~~I~~~i~~~~~~ilRIvI~SLgSP~wy~~-~~~~~~~ll~FL~~LRaLlR~~~~~~v~~iTlP~~l~------ 271 (361)
T 4a8j_A 199 PVSTILSQIEQTIKRNDKKLIRIVIPSLLHPAMYPP-KMFESSEIIGLMHGVRSLVKKYYERVVLFASISIDII------ 271 (361)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEEETTTTCTTTSCG-GGGBHHHHHHHHHHHHHHHHHTTTTEEEEEEEECTTS------
T ss_pred hHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCC-cccCHHHHHHHHHHHHHHHhhcCCceEEEEEEChHHc------
Confidence 56678888877765533 44677776665432111 1123456788999999999987 4455555442111
Q ss_pred CCCcccccccccchhccceEEEEEeC
Q 009230 470 PPNLYDISGSAHFINKCDNGIVIHRN 495 (539)
Q Consensus 470 ~~~~~~l~gs~~i~~~aD~vl~l~r~ 495 (539)
+. . =...++..+|.||.|..-
T Consensus 272 -~~--~--l~~rle~l~D~vi~L~pF 292 (361)
T 4a8j_A 272 -TP--P--LLVLLRNMFDSVINLEPF 292 (361)
T ss_dssp -CH--H--HHHHHHHHCSEEEEEEEC
T ss_pred -Ch--H--HHHHHHHhCcEEEEeeec
Confidence 11 1 124789999999999873
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.94 E-value=0.13 Score=46.79 Aligned_cols=37 Identities=22% Similarity=0.119 Sum_probs=30.2
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.++|.|.+|+|||||+..++..... ..++..++.+..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~~--~~~~~~i~~d~~ 68 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIGN--EVKIGAMLGDVV 68 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTT--TSCEEEEECSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc--CCeEEEEecCCC
Confidence 6889999999999999999877543 367888887764
No 404
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.90 E-value=0.14 Score=54.07 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcC-CeEEEEeCC
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAG-WKFVLCSME 335 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g-~~vl~~s~E 335 (539)
+.|-+++|.|.||+||||++..++..+... | .++.+++.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~-G~~~~~~lD~D 434 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ-GGRSVSLLLGD 434 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH-CSSCEEEEEHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhccc-CCceEEEECcH
Confidence 356789999999999999999999887664 6 888887743
No 405
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.84 E-value=0.096 Score=47.70 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~ 320 (539)
++|.|+||+||||++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999998888764
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.78 E-value=0.089 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.816 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.+++|.|+||+||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988775
No 407
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.71 E-value=0.13 Score=47.60 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=22.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
..+|..+.|.|++|+||||++..++..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999998877653
No 408
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.69 E-value=0.15 Score=53.33 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
+...++|.|+||+|||+++..++..+ |.++++++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l----~~~~i~in~s~ 112 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL----GYDILEQNASD 112 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 34588999999999999988877653 78888887653
No 409
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.68 E-value=0.14 Score=53.91 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=38.0
Q ss_pred hhhhhhhc--c----CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 286 RALNELYN--V----LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 286 ~~LD~~~~--l----~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+.+...+. + ..+.+++|+|.+|+||||++..++..+..+ |.++.+++.+
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~-G~~~~~ld~D 409 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR-GRKVTLLDGD 409 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEECHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc-CCeEEEECch
Confidence 44555554 3 347789999999999999999999877664 8888888743
No 410
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.66 E-value=0.085 Score=51.10 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=34.0
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKVREHA 342 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~~~~~ 342 (539)
..+.-++|.|+||+|||+++..++..... .+.+++++++..-+..+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~~~~~l~ 69 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR-SDRPLVTLNCAALNESLL 69 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSSCCHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCCCChHHH
Confidence 33456889999999999999888765444 367888887665444443
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.65 E-value=0.1 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.497 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.+++|+|++|+||||++..++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 58999999999999998887754
No 412
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.64 E-value=0.088 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
...+++|+|+||+||||++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999887764
No 413
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.63 E-value=0.094 Score=47.04 Aligned_cols=22 Identities=32% Similarity=0.209 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.++.|+|++|+||||++..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999877664
No 414
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=91.59 E-value=0.11 Score=45.30 Aligned_cols=24 Identities=42% Similarity=0.328 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
.|.-++|.|+||+||||+++.++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466789999999999999888775
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.49 E-value=0.13 Score=46.35 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
++.|+|++|+||||++..++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999998877654
No 416
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.42 E-value=0.17 Score=55.85 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCCH-HHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENKV-REHARKLL 346 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~~-~~~~~r~~ 346 (539)
.+.+++|.|+||+|||+++..++..+....+.+|+..+.-..+ .++..|+.
T Consensus 370 ~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHH
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Confidence 3569999999999999999999888776447899988766443 45555554
No 417
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.41 E-value=0.77 Score=48.76 Aligned_cols=112 Identities=10% Similarity=-0.034 Sum_probs=59.7
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhhCCCccccccCCCCCCCCHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKKPFFEANYGGSAERMTVEEFE 372 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 372 (539)
+..|.-+++.+|||+|||.. .++.. .. .+..+++++.--. ..+...++.. .|++...+. +..+.++..
T Consensus 56 il~g~d~lv~~pTGsGKTl~-~~lpa--l~-~~g~~lVisP~~~L~~q~~~~l~~--~gi~~~~l~-----~~~~~~~~~ 124 (591)
T 2v1x_A 56 TMAGKEVFLVMPTGGGKSLC-YQLPA--LC-SDGFTLVICPLISLMEDQLMVLKQ--LGISATMLN-----ASSSKEHVK 124 (591)
T ss_dssp HHTTCCEEEECCTTSCTTHH-HHHHH--HT-SSSEEEEECSCHHHHHHHHHHHHH--HTCCEEECC-----SSCCHHHHH
T ss_pred HHcCCCEEEEECCCChHHHH-HHHHH--HH-cCCcEEEEeCHHHHHHHHHHHHHh--cCCcEEEEe-----CCCCHHHHH
Confidence 33465688999999999953 33322 12 3568888875422 2334444433 255543332 245666655
Q ss_pred HHHHHhh---c-cceeEeecCCCCCCHHH------HHHHHHHHHHHcCCcEEEEccccccc
Q 009230 373 QGKAWLS---N-TFSLIRCENDSLPSIKW------VLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 373 ~~~~~l~---~-~~~~i~~~~~~~~~~~~------i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
.....+. . ..+++ .+++. +.+.+........+.+||||-...+.
T Consensus 125 ~~~~~l~~~~~~~~Ilv-------~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 125 WVHAEMVNKNSELKLIY-------VTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHHHHHHCTTCCCCEEE-------ECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred HHHHHhhcccCCCCEEE-------EChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 5544442 1 12322 13333 33334443344578999999666554
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.38 E-value=0.12 Score=47.19 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
+-+++|+|++|+||||++..++. .|.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-----lg~~~i 32 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-----LGINVI 32 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-----TTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-----cCCEEE
Confidence 45889999999999999887753 266544
No 419
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=91.36 E-value=0.48 Score=43.24 Aligned_cols=40 Identities=15% Similarity=-0.021 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHH--------hcCCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINE--------HAGWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~--------~~g~~vl~~s~E 335 (539)
.|.-+++.+++|+|||...+-.+..... ..+..++|+..-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt 103 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPT 103 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSS
T ss_pred CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCC
Confidence 4555789999999999654433333221 136678888743
No 420
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.36 E-value=0.12 Score=50.81 Aligned_cols=24 Identities=17% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+.++|.|+||+||||++.-++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999999887654
No 421
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.22 E-value=0.13 Score=54.10 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+|..++|.|+||+|||+++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999887654
No 422
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.17 E-value=1.1 Score=39.85 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=26.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh--cCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~--~g~~vl~~s~E 335 (539)
+..|.-+++.+++|+|||...+-.+...... .+.+++|+..-
T Consensus 37 ~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 80 (206)
T 1vec_A 37 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPT 80 (206)
T ss_dssp HHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSC
T ss_pred HccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCc
Confidence 4445668899999999996544333333211 24578888743
No 423
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.16 E-value=0.16 Score=50.75 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
..-++|.|+||+|||+++..++..+ +.+++.++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l----~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL----DIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh----CCCEEEecc
Confidence 3457899999999999998887543 667777654
No 424
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.01 E-value=0.15 Score=50.64 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+.-++|.|+||+|||+++..++... +.+++.++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~----~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL----DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEech
Confidence 4467899999999999988887553 667666653
No 425
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.01 E-value=0.21 Score=51.86 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=28.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
+++| ++|.|+||+|||+++..++.. .+.+.++++..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~----~~~~~i~i~g~ 98 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGE----ARVPFITASGS 98 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHH----TTCCEEEEEGG
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHH----hCCCEEEEehh
Confidence 6667 889999999999998877754 25677777754
No 426
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.90 E-value=0.089 Score=53.16 Aligned_cols=22 Identities=41% Similarity=0.439 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~ 319 (539)
..+.|.|++|+|||||+..++-
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3999999999999999877664
No 427
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.85 E-value=0.14 Score=44.78 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCCChhHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la 318 (539)
+|.-++|.|++|+|||||+..++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 56678999999999999987765
No 428
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.81 E-value=0.096 Score=52.95 Aligned_cols=39 Identities=8% Similarity=0.097 Sum_probs=24.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHH-----hcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINE-----HAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~-----~~g~~vl~~s~E~~ 337 (539)
+.++.|..|+||||++.++|..++. +.|.+|+++.++..
T Consensus 114 Iav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 114 IFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp EEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 5555589999999999999999983 24999999999853
No 429
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.79 E-value=0.16 Score=49.34 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..++|.|+||+|||+++..++... +.++.+++..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~----~~~~~~~~~~ 72 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL----GVNLRVTSGP 72 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH----TCCEEEECTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh----CCCEEEEecc
Confidence 467899999999999999887653 5677777654
No 430
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.79 E-value=0.2 Score=49.08 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
-++|.|+||+|||+++..++.. .+.++..++.
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~----~~~~~~~~~~ 88 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE----MSANIKTTAA 88 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH----TTCCEEEEEG
T ss_pred eEEEECcCCCCHHHHHHHHHHH----hCCCeEEecc
Confidence 4789999999999999888544 3566666654
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=90.78 E-value=0.11 Score=53.59 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=28.7
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
.|..|+.+.- +.+ +++.|.|++|+|||||+.-++--
T Consensus 16 ~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 16 NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 3556665544 888 99999999999999998876643
No 432
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=90.77 E-value=0.54 Score=51.57 Aligned_cols=106 Identities=19% Similarity=0.122 Sum_probs=61.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhh--CCCccccccCCCCCCCCHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHI--KKPFFEANYGGSAERMTVEEFEQGK 375 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~--~~~~~~i~~~~~~~~l~~~~~~~~~ 375 (539)
-.++.|++|+|||..++..+...... |..++++..... +.++..++..... ++....+. +..+..+.....
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~l~~-g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~-----G~~~~~~r~~~~ 464 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDNYEA-GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLI-----GATTPSEKEKIK 464 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHHHHH-TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECC-----SSSCHHHHHHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEe-----CCCCHHHHHHHH
Confidence 57899999999999888777777665 889999886532 4455555544433 33332222 245555555555
Q ss_pred HHhhcc--ceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccc
Q 009230 376 AWLSNT--FSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNE 421 (539)
Q Consensus 376 ~~l~~~--~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~ 421 (539)
+.+... .++| +.+ ..+ .....-.++++||||-...
T Consensus 465 ~~l~~g~~~IvV-----gT~--~ll----~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 465 SGLRNGQIDVVI-----GTH--ALI----QEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp HHHHSSCCCEEE-----ECT--THH----HHCCCCSCCCEEEEESCCC
T ss_pred HHHhcCCCCEEE-----ECH--HHH----hhhhhccCCceEEecccch
Confidence 555432 2333 111 111 1111224678999996554
No 433
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.76 E-value=0.16 Score=46.00 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=21.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
|.+| +++|.|++|+|||+++-.|...+
T Consensus 21 f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 21 FKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 5554 99999999999999988765443
No 434
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.75 E-value=0.23 Score=50.68 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMEN 336 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~ 336 (539)
.-++|.|+||+|||+++..++.++... |.+++++....
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~-g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLR-GDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHT-TCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence 467899999999999988888887764 88888887553
No 435
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.65 E-value=0.28 Score=48.15 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=27.8
Q ss_pred EEEEcCCCCChhHHHHHHHHHHHHh--cCCeEEEEeCC
Q 009230 300 TIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 335 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~~a~~--~g~~vl~~s~E 335 (539)
++|.|+||+|||+++..++..+... ....+..++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 8899999999999999999876531 24566666654
No 436
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=90.65 E-value=0.28 Score=56.02 Aligned_cols=114 Identities=15% Similarity=0.032 Sum_probs=62.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhh--CC----CccccccCCCCCCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHI--KK----PFFEANYGGSAERM 366 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~--~~----~~~~i~~~~~~~~l 366 (539)
+..|.-+++.|++|+|||.+++-++..+... +..+++++.--. ..++..++..... ++ ....+ .| ..
T Consensus 68 il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~-~G----g~ 141 (1054)
T 1gku_B 68 ILRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYY-HG----RI 141 (1054)
T ss_dssp HHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEEC-CS----SC
T ss_pred HHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEE-eC----CC
Confidence 4567778899999999999777777666554 788888875422 3444444433322 22 11111 12 23
Q ss_pred CHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccc
Q 009230 367 TVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELD 423 (539)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~ 423 (539)
+..+..+..+.+....++| .|+..+.+.+.. -..+++||||-...+.
T Consensus 142 ~~~~~~~~~~~l~~~~IlV-------~TP~~L~~~l~~---L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 142 PKREKENFMQNLRNFKIVI-------TTTQFLSKHYRE---LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp CSHHHHHHHHSGGGCSEEE-------EEHHHHHHCSTT---SCCCSEEEESCHHHHH
T ss_pred ChhhHHHHHhhccCCCEEE-------EcHHHHHHHHHH---hccCCEEEEeChhhhh
Confidence 3333333334444422333 134555444333 2368899999655443
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.62 E-value=0.13 Score=49.19 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEE
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHAGWKFV 330 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl 330 (539)
-+++|+|++|+||||++..++ . .|.+++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~----lg~~~i 103 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-N----LGAYII 103 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-H----HTCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH-H----CCCcEE
Confidence 479999999999999998887 3 276654
No 438
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.54 E-value=0.39 Score=47.15 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=32.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeCCCC-HHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSMENK-VREHARKL 345 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~E~~-~~~~~~r~ 345 (539)
.-+++.+++|+|||..+...+...... .+.+++++..--. ..++..++
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 94 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEI 94 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHH
Confidence 578899999999998877666655432 3678888875422 23444444
No 439
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.52 E-value=0.29 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+.+-+-.+|+|||+++..++..+.++ |.+|.||-
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~~-G~~V~~~K 40 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEHQ-NIKSLCLK 40 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHT-TCCEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHC-CCeeEEec
Confidence 44444559999999999999998886 99999984
No 440
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.51 E-value=0.17 Score=49.79 Aligned_cols=29 Identities=34% Similarity=0.394 Sum_probs=24.0
Q ss_pred cCCCcE--EEEEcCCCCChhHHHHHHHHHHH
Q 009230 294 VLPGEL--TIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 294 l~~G~l--~~i~G~~G~GKT~~~~~la~~~a 322 (539)
+.+|+. ++|.|++|+||||++..++..+-
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 566766 89999999999999988876553
No 441
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=90.43 E-value=0.39 Score=55.79 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHH-h--cCCeEEEEeCCCC
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINE-H--AGWKFVLCSMENK 337 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~-~--~g~~vl~~s~E~~ 337 (539)
.++.|.|..|+||||+|.+++.+... . ....++|+++...
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 58899999999999999998876432 1 2346888887653
No 442
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.29 E-value=1.2 Score=45.29 Aligned_cols=53 Identities=13% Similarity=0.064 Sum_probs=36.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC-HHHHHHHHHHHhhCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK-VREHARKLLEKHIKK 352 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~-~~~~~~r~~~~~~~~ 352 (539)
-.+|++++|+|||..+..++.......+.+++++..--. ..+...++ ....+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~-~~~~~~ 78 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESF-RRLFNL 78 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHH-HHHBCS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHH-HHHhCc
Confidence 567899999999998888877776545789999985422 23343333 334444
No 443
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.28 E-value=0.12 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.9
Q ss_pred cCC--CcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLP--GELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~--G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+ |+.+.|.|++|+|||||+..++..
T Consensus 165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 165 ARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 677 999999999999999998887754
No 444
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=90.28 E-value=0.12 Score=57.00 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
++++.|++|+|.+|||||+|+......-.
T Consensus 33 iP~~~l~viTGvSGSGKSSLafdtl~ae~ 61 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFGTLYAEA 61 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTTTHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999988665443
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.24 E-value=0.098 Score=55.62 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=25.0
Q ss_pred hhhhhc-cCCCcEEEEEcCCCCChhHHHHHHH
Q 009230 288 LNELYN-VLPGELTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 288 LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la 318 (539)
|+++.- +++|+.+.|.|++|+||||++.-++
T Consensus 357 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred eeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 444433 8999999999999999999976544
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.23 E-value=0.18 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.4
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
+.+| +++|.|++|+||||++-.++..
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 7777 9999999999999998766644
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=90.13 E-value=0.081 Score=58.55 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.7
Q ss_pred ccCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 293 NVLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 293 ~l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
++.++.-++|.|+||+|||+++..++..+ +.+++.++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~----~~~~i~v~ 543 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISIK 543 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHH----TCCCCCCC
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 37788889999999999999998888654 44444444
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.13 E-value=0.19 Score=46.68 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+|-+++|.|.+|+||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35689999999999999988887653
No 449
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.07 E-value=0.44 Score=48.71 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=26.9
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
-++|.|+||+|||+++..++.. .+.+...++....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~----~~~~f~~l~a~~~ 86 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY----ANADVERISAVTS 86 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH----TTCEEEEEETTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHH----hCCCeEEEEeccC
Confidence 4899999999999998877755 3566677766543
No 450
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.04 E-value=0.096 Score=49.46 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~ 320 (539)
++|.|+||+|||+++..++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 779999999999999888764
No 451
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=89.94 E-value=0.32 Score=52.00 Aligned_cols=40 Identities=15% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHHHHH---hcCCeEEEEeCC
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICNINE---HAGWKFVLCSME 335 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~~a~---~~g~~vl~~s~E 335 (539)
.+.+++|.|+||+|||+++..++..+.. ..+.+|+..+.-
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 4679999999999999999988877664 235678777543
No 452
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.89 E-value=0.22 Score=45.43 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=27.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCCCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSMENK 337 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E~~ 337 (539)
.++|.|.+|+|||||+.+++..... ..++..+..+..
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~--~~~~~~i~~d~~ 76 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKD--KYKIACIAGDVI 76 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT--TCCEEEEEEETT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc--CCeEEEEECCCC
Confidence 5778899999999999999977644 355655555543
No 453
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.67 E-value=0.25 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~ 320 (539)
++..-++|.||||+|||.|+..+|..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999988764
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.58 E-value=0.26 Score=45.04 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 295 LPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 295 ~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+|-+++|.|++|+||||.+..++..+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998887664
No 455
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.49 E-value=0.28 Score=50.42 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
..++.-+++.|+||+|||+++..++..+-. ..++++++.
T Consensus 60 ~~~~~~iLl~GppGtGKT~la~ala~~l~~--~~~~~~~~~ 98 (456)
T 2c9o_A 60 KMAGRAVLLAGPPGTGKTALALAIAQELGS--KVPFCPMVG 98 (456)
T ss_dssp CCTTCEEEEECCTTSSHHHHHHHHHHHHCT--TSCEEEEEG
T ss_pred CCCCCeEEEECCCcCCHHHHHHHHHHHhCC--CceEEEEeH
Confidence 334446889999999999999988876421 256666553
No 456
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.37 E-value=0.2 Score=43.18 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la 318 (539)
.++|.|++|+|||||+..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999988875
No 457
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.35 E-value=0.18 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
..+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhc
Confidence 78999999999999999999776653
No 458
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.30 E-value=0.5 Score=50.78 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcC---CeEEEEeCCCC-HHHHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAG---WKFVLCSMENK-VREHARKLLEK 348 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g---~~vl~~s~E~~-~~~~~~r~~~~ 348 (539)
...++|.|+||+|||+.+.+-+.+++.+.+ .+++++++-.. ..++..|+...
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 345678899999999999998888887523 67999887533 45666666543
No 459
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.21 E-value=0.23 Score=48.43 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=26.8
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
+..|.-++|.|+||+|||+++..++..+ +.++..+.+
T Consensus 43 l~~~~~vll~G~pGtGKT~la~~la~~~----~~~~~~i~~ 79 (331)
T 2r44_A 43 ICTGGHILLEGVPGLAKTLSVNTLAKTM----DLDFHRIQF 79 (331)
T ss_dssp HHHTCCEEEESCCCHHHHHHHHHHHHHT----TCCEEEEEC
T ss_pred HHcCCeEEEECCCCCcHHHHHHHHHHHh----CCCeEEEec
Confidence 4445678899999999999998887543 445555443
No 460
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=89.18 E-value=0.087 Score=44.64 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=18.4
Q ss_pred CcEEEEEcCCCCChhHHHHHHHH
Q 009230 297 GELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.-++|.|+||+|||+++..++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 34578999999999999776653
No 461
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.00 E-value=0.23 Score=49.79 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=26.1
Q ss_pred hhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 291 LYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 291 ~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+++ +.+|..+.|.|+||+|||||...++-
T Consensus 13 ~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 13 QWGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CCSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 466 88999999999999999999988875
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.98 E-value=0.22 Score=42.60 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=17.5
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|.+|+|||||+..++.
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 57889999999999988764
No 463
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.91 E-value=0.24 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINE 323 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~ 323 (539)
.-.+|.|+||+|||+++..++..+..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 35689999999999999999888754
No 464
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.90 E-value=0.51 Score=42.28 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
+++|-|.-|+||||.+..++..+..+ |.+|++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEE
Confidence 57888999999999999998887764 99987654
No 465
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.82 E-value=0.35 Score=43.71 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS 333 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s 333 (539)
|.+++|-|..|+||||.+..++..+. + |.+|++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~-~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-K-DYDVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-T-TSCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-C-CCCEEEee
Confidence 56899999999999999988887764 3 78877543
No 466
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.80 E-value=0.3 Score=48.36 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHH
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
..++|.|++|+|||+++..++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999998886653
No 467
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.75 E-value=0.22 Score=44.30 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~ 319 (539)
.++|.|++|+|||||+..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999887764
No 468
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.74 E-value=0.34 Score=49.91 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 297 GELTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 297 G~l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
..++++.|.||+||||++..++...-.. +.++..|+.+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecc
Confidence 3588999999999999999999887654 6677766644
No 469
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.71 E-value=0.21 Score=49.01 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNIN 322 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a 322 (539)
.+++.|++|+|||+++..++..+.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 589999999999999999987764
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.65 E-value=0.24 Score=42.06 Aligned_cols=19 Identities=37% Similarity=0.739 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la 318 (539)
++|.|.+|+|||+|+..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999988776
No 471
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.64 E-value=0.2 Score=44.13 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|++|+|||||+..++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999988764
No 472
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=88.59 E-value=0.23 Score=49.14 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.5
Q ss_pred Cchhhhhhhc-cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 284 GWRALNELYN-VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 284 g~~~LD~~~~-l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+|..++.+.- +.+| +++|.|++|+|||+++-.+..
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 13 NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 4555554433 8888 999999999999999888764
No 473
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=88.55 E-value=0.25 Score=42.15 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|++|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67899999999999877764
No 474
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.51 E-value=0.68 Score=42.01 Aligned_cols=42 Identities=7% Similarity=0.087 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh--cCCeEEEEeCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH--AGWKFVLCSME 335 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~--~g~~vl~~s~E 335 (539)
+..|.-+++.+++|+|||....-.+.+.... .+.+++++..-
T Consensus 48 ~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 91 (224)
T 1qde_A 48 IIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 91 (224)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred HhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 3345558899999999997633333332211 24578888744
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.43 E-value=0.24 Score=42.11 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
+++.|.+|+|||||+..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999888764
No 476
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.42 E-value=0.28 Score=47.86 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.5
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
|.+| +++|.|++|+|||+++-.+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 7788 999999999999999888764
No 477
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.39 E-value=0.25 Score=44.08 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~ 320 (539)
-++|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3678999999999998887643
No 478
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=88.28 E-value=0.61 Score=47.56 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=37.5
Q ss_pred cCCCcEEEEEcCCCCChhHHH-HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHhhCC
Q 009230 294 VLPGELTIVTGVPNSGKSEWI-DALICNINEHAGWKFVLCSMENKVREHARKLLEKHIKK 352 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~-~~la~~~a~~~g~~vl~~s~E~~~~~~~~r~~~~~~~~ 352 (539)
+..|.-+++.|++|+|||..+ +.++..+.. .+..++|++. -..++..+.....+.
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~P---tr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAP---TRVVLSEMKEAFHGL 60 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEES---SHHHHHHHHHHTTTS
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcc---hHHHHHHHHHHHhcC
Confidence 567889999999999999864 555544544 4778888873 344555554444443
No 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.24 E-value=0.95 Score=50.91 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCCChhHHHHHHHHH--HHHhcCCeEEEEeCCCC--HHHHHHHHHH
Q 009230 296 PGELTIVTGVPNSGKSEWIDALICN--INEHAGWKFVLCSMENK--VREHARKLLE 347 (539)
Q Consensus 296 ~G~l~~i~G~~G~GKT~~~~~la~~--~a~~~g~~vl~~s~E~~--~~~~~~r~~~ 347 (539)
...++.|.|+.|+||||+|.+++.. +.......++|+++... ...+...+..
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3569999999999999999998853 33333456888887643 4445444443
No 480
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=88.16 E-value=0.31 Score=49.58 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.1
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~ 319 (539)
+.+|++++|.|++|+|||+++..++.
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 66789999999999999999888764
No 481
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.15 E-value=0.24 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChhHHHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
.+.|.|++|+|||||+..++-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36789999999999988877544
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.14 E-value=0.27 Score=42.44 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la 318 (539)
++|.|.+|+|||+|+..+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 6789999999999988775
No 483
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.11 E-value=0.4 Score=52.74 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=29.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeCC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSME 335 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~E 335 (539)
-++|.|+||+|||+++..++..+.. .+.+++++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG-DEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC-CCcceEEEech
Confidence 5899999999999999999887754 36788888764
No 484
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.07 E-value=0.28 Score=41.85 Aligned_cols=20 Identities=25% Similarity=0.327 Sum_probs=17.3
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|.+|+|||+|+..++.
T Consensus 7 i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999887763
No 485
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=87.97 E-value=0.28 Score=42.07 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|.+|+|||+|+..++.
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67889999999999887763
No 486
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.91 E-value=0.29 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.9
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~ 320 (539)
++|.|++|+|||+|+..+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 678899999999998887643
No 487
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=87.91 E-value=0.58 Score=43.73 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=71.4
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEe-----CC--CCHHHHHHHHHHHhhCCCcc--ccccCCCCCCCCHH
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCS-----ME--NKVREHARKLLEKHIKKPFF--EANYGGSAERMTVE 369 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s-----~E--~~~~~~~~r~~~~~~~~~~~--~i~~~~~~~~l~~~ 369 (539)
+.+-+-.+|+|||++++.++..+.++ |.+|.||- .+ ...-.. +...++.+.. -+... ..+++.
T Consensus 29 i~Itgt~t~vGKT~vt~gL~~~l~~~-G~~V~~fKPv~~g~~~~~~D~~~----~~~~~g~~~~~~~~~~~---~p~sP~ 100 (251)
T 3fgn_A 29 LVVTGTGTGVGKTVVCAALASAARQA-GIDVAVCKPVQTGTARGDDDLAE----VGRLAGVTQLAGLARYP---QPMAPA 100 (251)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT-TCCEEEEEEEECCGGGTCCHHHH----HHHHHCCCEEEEEEECS---SSSCHH
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeeeecCCCCCCHHHHH----HHHHcCCCCCCCCeeEC---CCCChH
Confidence 56666678999999999999998886 99999995 21 111122 2333454311 01100 112221
Q ss_pred HHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHHHHHcCCcEEEEccccccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 009230 370 EFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAAVLRHGVRGLVIDPYNELDHQRPVSQTETEYVSQMLTMVKRFAQH 449 (539)
Q Consensus 370 ~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~~~~~~Lk~lA~~ 449 (539)
-.. .+.+ .....++.|.+.++++ ..+.|+||||.-..+..+.. ... .....+|+.
T Consensus 101 ~aa----~~~~---------~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~~pl~--~~~--------~~~adla~~ 155 (251)
T 3fgn_A 101 AAA----EHAG---------MALPARDQIVRLIADL--DRPGRLTLVEGAGGLLVELA--EPG--------VTLRDVAVD 155 (251)
T ss_dssp HHH----HHTT---------CCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTTCEEE--TTT--------EEHHHHHHH
T ss_pred HHH----HHcC---------CCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCcCCcC--ccc--------chHHHHHHH
Confidence 111 1111 1123456666655543 23578999997666553210 000 012346778
Q ss_pred hCcEEEEEecCC
Q 009230 450 HACHVWFVAHPR 461 (539)
Q Consensus 450 ~~i~vi~~~q~r 461 (539)
++.|||+|+..+
T Consensus 156 l~~pVILV~~~~ 167 (251)
T 3fgn_A 156 VAAAALVVVTAD 167 (251)
T ss_dssp TTCEEEEEECSS
T ss_pred cCCCEEEEEcCC
Confidence 899999998843
No 488
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=87.84 E-value=0.29 Score=41.97 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la 318 (539)
++|.|.+|+|||+|+..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999988875
No 489
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=87.77 E-value=2 Score=51.51 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=74.0
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHHHHh----------cCCeEEEEeCCCC-HHHHHHHHHHHh--hCCCccccccC
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNINEH----------AGWKFVLCSMENK-VREHARKLLEKH--IKKPFFEANYG 360 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~a~~----------~g~~vl~~s~E~~-~~~~~~r~~~~~--~~~~~~~i~~~ 360 (539)
+..++=+++++|||+|||..+.-.+.+...+ .+.+++|++.=-. ..+....+-... .|+....+ .|
T Consensus 92 l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~-tG 170 (1724)
T 4f92_B 92 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL-TG 170 (1724)
T ss_dssp HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEC-CS
T ss_pred HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEE-EC
Confidence 6678889999999999998765555544432 2568999985422 223333333322 23332222 22
Q ss_pred CCCCCCCHHHHHHHHHHhhccceeEeecCCCCCCHHHHHHHHHHH---HHHcCCcEEEEccccccccCCCCCCCHHHHHH
Q 009230 361 GSAERMTVEEFEQGKAWLSNTFSLIRCENDSLPSIKWVLDLAKAA---VLRHGVRGLVIDPYNELDHQRPVSQTETEYVS 437 (539)
Q Consensus 361 ~~~~~l~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~i~~~i~~~---~~~~~~~~vvID~~~~l~~~~~~~~~~~~~~~ 437 (539)
. ...+..+ +....++|. |++.+...++.. ..-..+++||||-.. ++.. ++-..++
T Consensus 171 d--~~~~~~~-------~~~~~IlVt-------TpEkld~llr~~~~~~~l~~v~~vIiDEvH-~l~d-----~RG~~lE 228 (1724)
T 4f92_B 171 D--HQLCKEE-------ISATQIIVC-------TPEKWDIITRKGGERTYTQLVRLIILDEIH-LLHD-----DRGPVLE 228 (1724)
T ss_dssp S--CSSCCTT-------GGGCSEEEE-------CHHHHHHHTTSSTTHHHHTTEEEEEETTGG-GGGS-----TTHHHHH
T ss_pred C--CCCCccc-------cCCCCEEEE-------CHHHHHHHHcCCccchhhcCcCEEEEecch-hcCC-----ccHHHHH
Confidence 1 0111111 222223441 344332222211 112468999999664 5432 2334456
Q ss_pred HHHHHHHHHHHH--hCcEEEEEec
Q 009230 438 QMLTMVKRFAQH--HACHVWFVAH 459 (539)
Q Consensus 438 ~~~~~Lk~lA~~--~~i~vi~~~q 459 (539)
.++.++....+. .++-+|.+|-
T Consensus 229 ~~l~rl~~~~~~~~~~~riI~LSA 252 (1724)
T 4f92_B 229 ALVARAIRNIEMTQEDVRLIGLSA 252 (1724)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEEEC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEec
Confidence 666666554443 3577888776
No 490
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=87.77 E-value=0.28 Score=42.05 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|.+|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 57889999999999888763
No 491
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=87.68 E-value=0.3 Score=41.92 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~ 320 (539)
++|.|.+|+|||+|+..++..
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 678899999999998887643
No 492
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.68 E-value=0.3 Score=42.88 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChhHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la 318 (539)
-++|.|++|+|||||+..++
T Consensus 9 ~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47799999999999988876
No 493
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.65 E-value=0.3 Score=42.27 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=17.0
Q ss_pred EEEEcCCCCChhHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALI 318 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la 318 (539)
++|.|.+|+|||+|+..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999988876
No 494
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.65 E-value=0.31 Score=41.64 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.4
Q ss_pred EEEEcCCCCChhHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~ 319 (539)
++|.|.+|+|||+|+..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57889999999999888764
No 495
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.61 E-value=0.22 Score=53.15 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCCCChhHHHHHHHHHH
Q 009230 294 VLPGELTIVTGVPNSGKSEWIDALICNI 321 (539)
Q Consensus 294 l~~G~l~~i~G~~G~GKT~~~~~la~~~ 321 (539)
+..|+.++|.|+||+||||++..++...
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 7788999999999999999999887644
No 496
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=87.58 E-value=0.55 Score=44.61 Aligned_cols=36 Identities=17% Similarity=0.014 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHhcCCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEHAGWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~~g~~vl~~s~ 334 (539)
-.+|++++|+|||..+..++.......+.+++++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~P 165 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVP 165 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECS
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 457899999999999888877766653449999974
No 497
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=87.57 E-value=0.31 Score=41.77 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=17.8
Q ss_pred EEEEcCCCCChhHHHHHHHHH
Q 009230 300 TIVTGVPNSGKSEWIDALICN 320 (539)
Q Consensus 300 ~~i~G~~G~GKT~~~~~la~~ 320 (539)
++|.|.+|+|||+|+..++..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 678899999999998887643
No 498
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=87.52 E-value=0.33 Score=46.93 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=25.8
Q ss_pred EEEEEcCCCCChhHHHHHHHHHHHHh-cCCeEEEEeC
Q 009230 299 LTIVTGVPNSGKSEWIDALICNINEH-AGWKFVLCSM 334 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~~~a~~-~g~~vl~~s~ 334 (539)
-++|.|+||+|||+++..++..+... ....++.++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 38999999999999999998776432 1133555543
No 499
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=87.50 E-value=0.31 Score=43.07 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChhHHHHHHHH
Q 009230 299 LTIVTGVPNSGKSEWIDALIC 319 (539)
Q Consensus 299 l~~i~G~~G~GKT~~~~~la~ 319 (539)
-++|.|.+|+|||+|+..++.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999887753
No 500
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=87.45 E-value=5.6 Score=43.92 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCChhHHHHHHHHHHHHhc-----CCeEEEEe
Q 009230 298 ELTIVTGVPNSGKSEWIDALICNINEHA-----GWKFVLCS 333 (539)
Q Consensus 298 ~l~~i~G~~G~GKT~~~~~la~~~a~~~-----g~~vl~~s 333 (539)
.+.+.+-.+|+|||+++.-++..+.+ . |.+|.||-
T Consensus 36 ~l~I~gt~s~vGKT~vt~gL~r~l~~-~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 36 TYLIWSANTSLGKTLVSTGIAASFLL-QQPSSSATKLLYLK 75 (831)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHS-CSSCCTTCEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh-cccccCCceEEEEc
Confidence 46666777999999999999987766 5 89999995
Done!