Query 009231
Match_columns 539
No_of_seqs 179 out of 2328
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 21:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 5.7E-29 2E-33 265.4 32.7 433 12-520 8-477 (491)
2 2xut_A Proton/peptide symporte 100.0 1.2E-28 4.1E-33 265.2 25.0 454 13-522 8-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 3.3E-25 1.1E-29 232.9 28.7 390 16-517 27-436 (451)
4 3o7q_A L-fucose-proton symport 99.9 2.8E-23 9.6E-28 217.5 32.8 357 12-475 21-408 (438)
5 4gc0_A D-xylose-proton symport 99.9 2.7E-23 9.3E-28 221.3 23.5 407 51-533 53-482 (491)
6 2gfp_A EMRD, multidrug resista 99.9 4.3E-22 1.5E-26 204.6 13.0 166 21-218 4-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.2E-21 4E-26 205.1 10.6 390 17-519 7-404 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.4E-12 4.8E-17 136.3 15.1 178 17-223 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.4E-11 4.9E-16 128.3 17.7 168 17-218 258-427 (438)
10 2cfq_A Lactose permease; trans 99.3 9.5E-12 3.2E-16 129.6 12.9 168 27-225 230-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 1.8E-10 6.3E-15 122.0 13.2 186 18-226 284-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 6.2E-08 2.1E-12 102.3 20.1 181 18-226 277-465 (491)
13 2gfp_A EMRD, multidrug resista 98.8 1.6E-09 5.5E-14 110.4 2.7 163 17-211 199-364 (375)
14 2xut_A Proton/peptide symporte 98.1 2.4E-05 8.4E-10 83.0 14.8 122 352-513 72-197 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=5.7e-29 Score=265.41 Aligned_cols=433 Identities=16% Similarity=0.175 Sum_probs=283.9
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhh-----ccCChhHHHHHHHHHHHHHHhhHHHHHHHHHh-hccchH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCRE-----YNMETTAATNIIFIWTAATNFLPIVGALLADS-YVGRYR 85 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr-~~Grk~ 85 (539)
.+.++|..+.+....+++++++|++.++++.|++++ +|+|..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345667888888899999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCC
Q 009231 86 MIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGT 165 (539)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~ 165 (539)
++..+.++.+++.++++++. +.+.++++|+++|+|.+...|+..++++|.+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999999888655 67789999999999999999999999999999865
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecC---C-CCCChhhHH
Q 009231 166 KSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSK---A-NTSLLPGLT 241 (539)
Q Consensus 166 ~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~ 241 (539)
+.|+.++++++...++|..+||.+++++.++.||++.|++.++..+++.+..+...++..+++ + ++.+..+..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 447889999999999999999999999999999999999988777666665544433322111 1 111112211
Q ss_pred HHHHH--------------HHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccc
Q 009231 242 QVLVA--------------SFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSL 307 (539)
Q Consensus 242 ~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (539)
+.... .......... +........ .. .....+... ...........+......+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 288 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSLP--AYINLLTIV----AI--AIPVFYFAW--MISSVKVTSTEHLRVVSYIPL 288 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCTT--HHHHHHHHH----HH--HHHHHHHHH--HC------------CTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccc--cchhhhhHH----HH--HHHHHHHHH--HhhcccccHHHHHHHHHHHHH
Confidence 11100 0001000000 000000000 00 000000000 000000000000000000000
Q ss_pred h---------hHh----hhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHH
Q 009231 308 C---------TVE----QASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGL 374 (539)
Q Consensus 308 ~---------~~~----q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~ 374 (539)
+ ..+ .........+.. ....+.....+.+..++..++. ..+.+|+++|+ ......+..|.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~l~~r~~~r~--~~~~~~~~~~~ 361 (491)
T 4aps_A 289 FIAAVLFWAIEEQGSVVLATFAAERVDSS-WFPVSWFQSLNPLFIMLYTPFF----AWLWTAWKKNQ--PSSPTKFAVGL 361 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHSCCCS-SSCSGGGTTHHHHHHHHHHHHH----HHHHHHTTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhccC-ccCHHHHhccchHHHHHHHHHH----HHHHHHHhccC--CCchHHHHHHH
Confidence 0 000 000111111100 0334555666666666666653 44567777664 55677788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHH
Q 009231 375 LFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSG 454 (539)
Q Consensus 375 ~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~ 454 (539)
.+.+++++++...... .+ ...+.+.+++.+.+++.+++++...|..++++.+.+|++.||+++|+++
T Consensus 362 ~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~ 428 (491)
T 4aps_A 362 MFAGLSFLLMAIPGAL-------YG------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWF 428 (491)
T ss_dssp HHHHHHHTTTHHHHHH-------CC------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHH
T ss_pred HHHHHHHHHHHHHHHh-------cC------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999988877665410 00 0123456677788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009231 455 AGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKAYGP 520 (539)
Q Consensus 455 ~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~ 520 (539)
...++|+.+++.+.+.+.+. ++...|+..+++.+++.++.+...++.++
T Consensus 429 ~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 429 LSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997765431 23566777788888777777766655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.2e-28 Score=265.24 Aligned_cols=454 Identities=18% Similarity=0.280 Sum_probs=271.1
Q ss_pred CCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhcc------CChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHH
Q 009231 13 KGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYN------METTAATNIIFIWTAATNFLPIVGALLADSYVGRYRM 86 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~ 86 (539)
++++|.++.+.+..++.++++|++.++++.|+++++| +|..+++++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4445677888889999999999999999999999999 9999999999999999999999999999994499999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCc
Q 009231 87 IGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTK 166 (539)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~ 166 (539)
+.++.++..++.++++++. .+.+.++++|+++|++.+...|+..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999988887643 1567788999999999999999999999999998653
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHH
Q 009231 167 SKGALQSYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVA 246 (539)
Q Consensus 167 ~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 246 (539)
+++...+++++...++|..+||.+++++.++.||++.|++.++..+++.+..+...++.+++++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 223556666999999999999999999998899999999988877766666555444433222222111111111111
Q ss_pred HHhhccCCCCC--------------------CC-------------------chhh--hccC-CCCcccCCCcchhhhhh
Q 009231 247 SFKNRRTKLPT--------------------QA-------------------TEEM--YHHG-KGSMRLMPSENLRFLNK 284 (539)
Q Consensus 247 ~~~~~~~~~~~--------------------~~-------------------~~~~--~~~~-~~~~~~~~~~~~~~~~~ 284 (539)
..++++...+. +. .+.+ .+.. +........+..+.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (524)
T 2xut_A 222 ALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRI 301 (524)
T ss_dssp -----CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHH
T ss_pred HHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHH
Confidence 11111100000 00 0000 0000 00000000000000000
Q ss_pred hhhhcCCCCCCCCCCCCCCCccchhHhhhhhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCC
Q 009231 285 ACMAKHPEQDLTPDGRASNPNSLCTVEQASSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQL 364 (539)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~ 364 (539)
....... . . -......+......+....+... + .+.+.....+.+..++..++.+++..+..+|.+++ .
T Consensus 302 ~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 370 (524)
T 2xut_A 302 LVLFALV-T-P--FWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---L 370 (524)
T ss_dssp HHHHTTS-H-H--HHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------
T ss_pred HHHHHHH-H-H--HHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---C
Confidence 0000000 0 0 00000000000001111122110 0 12334445555555666666666555555665444 5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCch
Q 009231 365 SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKS 444 (539)
Q Consensus 365 ~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 444 (539)
+..+.+.+|+++.+++++++...+.. . +...+.+.+++++.+++.+++++...+..++++.+.+|++
T Consensus 371 ~~~~~~~~g~~~~~~~~~~~~~~~~~----------~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~ 437 (524)
T 2xut_A 371 TALRKMGAGIAITGLSWIVVGTIQLM----------M---DGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKA 437 (524)
T ss_dssp CCHHHHHTHHHHHHHHHHTTTTTTTT----------T---TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH----------h---cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 66777888888888887776554200 0 0001235667778889999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCC-CCCCcchhHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q 009231 445 MSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPS-NINKGHYDYYYWLLTALSMANFLYYLACCKAYGPFK 522 (539)
Q Consensus 445 ~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~~~~ 522 (539)
+||+++|++++..++|+.+|+.+.+.+.+..+ .+|.++ +.+ .....|++.+++.+++.++++...+++++++
T Consensus 438 ~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (524)
T 2xut_A 438 MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQD 510 (524)
T ss_dssp CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999999988764321 122210 000 0122377777888888877777666655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=3.3e-25 Score=232.95 Aligned_cols=390 Identities=9% Similarity=-0.005 Sum_probs=251.0
Q ss_pred cchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 16 LRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|+.+.......++..+..+...+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 3445555556677777777666776655 5567 9999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHH----hhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhh
Q 009231 96 LGMVLLWS----TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGAL 171 (539)
Q Consensus 96 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r 171 (539)
++.+++++ +. +.+.++++|+++|++.+...++..++++|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 65 677899999999999999999999999999998 459
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhh
Q 009231 172 QSYFSWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKN 250 (539)
Q Consensus 172 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (539)
++++++.+...++|.+++|.+++++.+..| |++.|++.++..++..++.+...++.+++.+..+. .+
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 221 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------- 221 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh-----------
Confidence 999999999999999999999999888888 99999999887766655544444432221110000 00
Q ss_pred ccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-------------hhhhcc
Q 009231 251 RRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-------------QASSMD 317 (539)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------q~~~~~ 317 (539)
.+.. ..+ ..+..+ ..+...++. ..+... ..+..|..+... ......
T Consensus 222 ~~~~----~~~-~~~~~~-~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 222 YKND----YPD-DYNEKA-EQELTAKQI---FMQYVL------------PNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp TCCC-------------------CCTHH---HHHHTS------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred hccc----ccc-cchhhh-hcccccccc---hHHHHH------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 000 000000 000000000 000000 000001110000 111111
Q ss_pred CCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 009231 318 RHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFST-ASMTAWAIVEAARRSIAI 396 (539)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~-i~~~~~~~~~~~~~~~~~ 396 (539)
...+ .+......+... ..+...+...+...+.+|+.+ +++..+.++..+.+ ++++.+....
T Consensus 281 ~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-------- 342 (451)
T 1pw4_A 281 EVKH----FALDKSSWAYFL-YEYAGIPGTLLCGWMSDKVFR-----GNRGATGVFFMTLVTIATIVYWMNP-------- 342 (451)
T ss_dssp TBSC----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTST-----TCHHHHHHHHHHHHHHHHHHTTSCC--------
T ss_pred HhcC----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc-----CCchhHHHHHHHHHHHHHHHHHHhc--------
Confidence 1111 222211111111 111112222223444455310 44556666655555 5544443221
Q ss_pred hcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q 009231 397 NEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSA-ANLVASLIMNAVDDIT 475 (539)
Q Consensus 397 ~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~i-g~~lg~~l~~~i~~~~ 475 (539)
+.+.+.+....++.|++.....+....++.+..|++.||+++|+++...++ |..+++.+.+.+.+..
T Consensus 343 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 343 ------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 124555666677888888888888889999999999999999999999999 9999999999877543
Q ss_pred cCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q 009231 476 KRGGNGGWIPSNINKGHYDYYYWLLTALSMANFLYYLACCKA 517 (539)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~ 517 (539)
++...|++.+++.+++.+..+...++
T Consensus 411 ----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 411 ----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24677888888888777776665443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=2.8e-23 Score=217.54 Aligned_cols=357 Identities=13% Similarity=0.060 Sum_probs=231.3
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHH
Q 009231 12 PKGGLRTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGC 91 (539)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~ 91 (539)
.+++++.+..+....++..+..+...+.++. +.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~ 98 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL 98 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence 3444555666666677777776655555554 6789999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHH---HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccc
Q 009231 92 FTCLLGMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSK 168 (539)
Q Consensus 92 ~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~ 168 (539)
++.+++.+++ +.+. +.+.++++|++.|+|.+...++..++++|.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------ 149 (438)
T 3o7q_A 99 FLYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------ 149 (438)
T ss_dssp HHHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------
T ss_pred HHHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------
Confidence 9999999988 5444 7888999999999999999999999999999984
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhc-cccc-------------------------chhhhHHHHHHHHHHHHHHHh
Q 009231 169 GALQSYFSWYYVFVSASSIVAVTCIVYIQ-DNLG-------------------------WKVGFGVPAVIMLLSALSFFL 222 (539)
Q Consensus 169 ~~r~~~~~~~~~~~~lg~~~g~~i~~~l~-~~~g-------------------------~~~~f~i~~~~~l~~~~~~~~ 222 (539)
+|++++++.+...++|..++|.+++++. +..+ |++.|++.+...++..+..+.
T Consensus 150 -~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 150 -SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999987 5554 999998777665554444433
Q ss_pred c-CCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCC
Q 009231 223 A-SPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRA 301 (539)
Q Consensus 223 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (539)
. .|+.+++++++++..+..+.+....++ ......-.......
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~----------- 271 (438)
T 3o7q_A 229 TKFPALQSDNHSDAKQGSFSASLSRLARI--------------------------RHWRWAVLAQFCYV----------- 271 (438)
T ss_dssp CCCCCCTTTCCCCSSTTSHHHHHHHHTTC--------------------------SHHHHHHHHHHHHH-----------
T ss_pred HcCCcccccccccccccchhhhHHHHHhC--------------------------hHHHHHHHHHHHHH-----------
Confidence 2 222111111111111111111111100 00000000000000
Q ss_pred CCCccchhHhhhhh-ccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHH
Q 009231 302 SNPNSLCTVEQASS-MDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTAS 380 (539)
Q Consensus 302 ~~~~~~~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~ 380 (539)
............. .....+ .+.......... ..+...+...+...+.+| .++++.+..+.++.+++
T Consensus 272 -~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~-~~~~~~~~~~~~g~l~~r-------~~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 272 -GAQTACWSYLIRYAVEEIPG----MTAGFAANYLTG-TMVCFFIGRFTGTWLISR-------FAPHKVLAAYALIAMAL 338 (438)
T ss_dssp -HHHHHHHHHHHHHHHHHSTT----CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhccCC----cchhHHHHHHHH-HHHHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHHH
Confidence 0000000000111 111111 122111111111 111111222223344444 66667888888888777
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHHHHHHHHHH
Q 009231 381 MTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTLSGAGLSAA 460 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig 460 (539)
.+...+.+ +.+ ....+++.+++.+...|..+.+..+..|++ +++++++.. ...+|
T Consensus 339 ~~~~~~~~----------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 339 CLISAFAG----------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHCC----------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred HHHHHHcC----------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 76655442 222 334457788888888999999989999987 999999887 67799
Q ss_pred HHHHHHHHHHhhhhh
Q 009231 461 NLVASLIMNAVDDIT 475 (539)
Q Consensus 461 ~~lg~~l~~~i~~~~ 475 (539)
+.+++.+.+.+.+..
T Consensus 394 ~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 394 GGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887765
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.91 E-value=2.7e-23 Score=221.27 Aligned_cols=407 Identities=12% Similarity=0.032 Sum_probs=227.2
Q ss_pred ChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccch
Q 009231 51 ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQL 130 (539)
Q Consensus 51 s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (539)
+..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++........+ .......-..+.
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~-----~~~~~~~~a~~~ 126 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP-----DNTVPVYLAGYV 126 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS-----SSSCCGGGGGCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-----hhHHHHHHhhhH
Confidence 446778999999999999999999999997 99999999999999999999864311100000 000000012378
Q ss_pred HHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHhhhhccc--------ccc
Q 009231 131 MPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYVFVSASSIVAVTCIVYIQDN--------LGW 202 (539)
Q Consensus 131 ~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~g~~i~~~l~~~--------~g~ 202 (539)
+.++++|+++|+|.|+..+..+++++|..|+ ++|++..++.+....+|..+++.++..+... ..|
T Consensus 127 ~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4gc0_A 127 PEFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence 8899999999999999999999999999999 5599999999999999999999877665432 346
Q ss_pred hhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccCCCCCCCchhhhccCCCCcccCCCcchhhh
Q 009231 203 KVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRTKLPTQATEEMYHHGKGSMRLMPSENLRFL 282 (539)
Q Consensus 203 ~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (539)
++.+.+..+..++..+.. ...|+.+.--..+.+.++..+.+.....+..... ......+..+..++. . . + .
T Consensus 200 ~~~~~~~~~~~~~~~~~~-~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~-~-~--~-~ 270 (491)
T 4gc0_A 200 RYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ---AVQEIKHSLDHGRKT-G-G--R-L 270 (491)
T ss_dssp HHHHHTTHHHHHHHHHHG-GGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-T-T--H-H
T ss_pred HHHhhhhhhhhhhhhhhh-hcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH---HHHHHHHHHHhhhhh-h-h--H-H
Confidence 666665554444333322 2222221110011222222333322211110000 000000000000000 0 0 0 0
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCccch---hHhhh----------hhccCCCCCCeeecCcchhhhhHHHHHHHHHHHhHH
Q 009231 283 NKACMAKHPEQDLTPDGRASNPNSLC---TVEQA----------SSMDRHVTPNFEIPSGSFNIFAILTLTIWIGLYDRA 349 (539)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~q~----------~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~~ 349 (539)
.. . ......... ..+|. .......+ ... ...........+...+...+
T Consensus 271 ---~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 331 (491)
T 4gc0_A 271 ---LM-F----------GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG----AST-DIALLQTIIVGVINLTFTVL 331 (491)
T ss_dssp ---HH-S----------CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS----CCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HH-h----------cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC----CCc-cchhhHHHHHHHHHHHHHHH
Confidence 00 0 000000000 00000 00000000 000 00111111111112222223
Q ss_pred HHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHH-HHH
Q 009231 350 VLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLA-MAF 428 (539)
Q Consensus 350 ~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g-~~~ 428 (539)
...+.+|+ ++++.+..+...++++.+.++.... .....+..+...++...+ ...
T Consensus 332 ~~~l~dr~-------Grr~~~~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4gc0_A 332 AIMTVDKF-------GRKPLQIIGALGMAIGMFSLGTAFY------------------TQAPGIVALLSMLFYVAAFAMS 386 (491)
T ss_dssp HHHHHHHH-------CSHHHHHHHHHHHHHHHHHHHHHHH------------------TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhh-------cCcchhccchHHHHHHHHHHHHHHh------------------cccchHHHHHHHHHHHHHHHhH
Confidence 44556664 4446777777777777766655430 111122222222222222 233
Q ss_pred HhhhhhhhhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHH
Q 009231 429 NMIGQTEFYYTELPKSMSSIASTLSGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMANF 508 (539)
Q Consensus 429 ~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~ 508 (539)
..|..+.+..|..|++.|++++|+.+..+++++.+++.+.+.+.+....... .+....|++.+++++++.
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~----------~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAH----------FHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHH----------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhHHHHHHHHHHHHHH
Confidence 4466677888999999999999999999999999999998876542210000 012356788899999999
Q ss_pred HHHHHHhhhcccCCCCc-CccCCCCC
Q 009231 509 LYYLACCKAYGPFKGRV-GTAFDDKD 533 (539)
Q Consensus 509 ~~~~~~~~~~~~~~~~~-~~~~~~~~ 533 (539)
++.+++.+|+|+++.|| ++.+++++
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHheecCCCCCCHHHHHHHhCCCC
Confidence 99999999999999988 55555443
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.87 E-value=4.3e-22 Score=204.57 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Q 009231 21 FIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVL 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l 100 (539)
.+....++..+......+.++.+ .+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||++..+.++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 34456666777777677777765 678999999999999999999999999999999997 9999999999999999999
Q ss_pred HHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHHHHH
Q 009231 101 LWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSWYYV 180 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~ 180 (539)
.++++ +.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ-------LRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-------CCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH-------HHHHHHHHHH
Confidence 98877 78889999999999999999999999999999844 8999999999
Q ss_pred HHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHH
Q 009231 181 FVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 181 ~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~ 218 (539)
..++|..++|.+++++.++.+|++.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988999999988776655544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=1.2e-21 Score=205.09 Aligned_cols=390 Identities=11% Similarity=0.013 Sum_probs=217.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLL 96 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~ 96 (539)
|..+......++..+++....++++.|+++++|+|+.++|++.+.+.++..++++++|+++||+ ||||++++++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 5566666666777777888889999999999999999999999999999999999999999997 999999998887655
Q ss_pred HHHHH---HHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 97 GMVLL---WSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 97 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
+.... .++... ...+..++.+.+++.+...+...+...+..++.. ++++.
T Consensus 86 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~ 138 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS-----RRSNF 138 (417)
T ss_dssp CHHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH-----HHHTC
T ss_pred HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh-----hhccc
Confidence 33221 221100 0012334445555555444444444444443311 23566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCceeecCCCCCChhhHHHHHHHHHhhccC
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPFYVKSKANTSLLPGLTQVLVASFKNRRT 253 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (539)
.++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++.++ ++++++. .+.
T Consensus 139 ~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------~~~ 203 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS-SATVANA-------------VGA 203 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-SSCSSSS-------------SSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc-ccccccc-------------ccc
Confidence 6677777789999999999999876 589999987766543333322222111100 0000000 000
Q ss_pred CCCCCCchhhhccCCCCcccCCCcchhhhhhhhhhcCCCCCCCCCCCCCCCccchhHh-hhhhccCCCCCCeeecCcc--
Q 009231 254 KLPTQATEEMYHHGKGSMRLMPSENLRFLNKACMAKHPEQDLTPDGRASNPNSLCTVE-QASSMDRHVTPNFEIPSGS-- 330 (539)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-q~~~~~~~~~~~~~~~~~~-- 330 (539)
.......+... ..........+ ...... ....+. ...+ .........+ ........
T Consensus 204 ~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~g 262 (417)
T 2cfq_A 204 NHSAFSLKLAL-------ELFRQPKLWFL--SLYVIG----------VSCTYD-VFDQQFANFFTSFFA-TGEQGTRVFG 262 (417)
T ss_dssp CCCCCCHHHHH-------HHTTCHHHHHH--HHHHHH----------HHHHHH-HHHHHHHHHHHHTSS-SHHHHTHHHH
T ss_pred ccccccHHHHH-------HHhcCCchhhH--HHHHHH----------HHHHHH-HHHHHHHHHHHHHHh-ccCCChhHHH
Confidence 00000000000 00000000000 000000 000000 0000 0001111110 00000111
Q ss_pred -hhhhhHHHHHHHHHHHhHHHHHHhhhhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccc
Q 009231 331 -FNIFAILTLTIWIGLYDRAVLPLASKIKGKPCQLSLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQ 409 (539)
Q Consensus 331 -~~~~~~~~ii~~~~l~~~~~~~l~~k~~~~~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 409 (539)
...++.+. ..+......++.+| .++++.+..+.++.+++++...+.+
T Consensus 263 ~~~~~~~~~----~~~~~~~~g~l~dr-------~g~~~~l~~~~~~~~~~~~~~~~~~--------------------- 310 (417)
T 2cfq_A 263 YVTTMGELL----NASIMFFAPLIINR-------IGGKNALLLAGTIMSVRIIGSSFAT--------------------- 310 (417)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHH-------HCHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHH-------hcHHHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 11111111 11222233444555 4555677777777777655543321
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCchhhhHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCC
Q 009231 410 MSAMWQLPYLVLSGLAMAFNMIGQTEFYYTELPKSMSSIASTL-SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNI 488 (539)
Q Consensus 410 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~ 488 (539)
+.+.++...++.+++.....+....+..+..|++.||+++++ ++..+++|+.++|.+.|.+.+..
T Consensus 311 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~------------- 376 (417)
T 2cfq_A 311 -SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI------------- 376 (417)
T ss_dssp -SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-------------
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-------------
Confidence 344455555666777777777778889999999999999999 58889999999999998776432
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009231 489 NKGHYDYYYWLLTALSMANFLYYLACCKAYG 519 (539)
Q Consensus 489 ~~~~~~~~f~~~~~~~~v~~~~~~~~~~~~~ 519 (539)
++...|.+.+++.+++.++.+...++++
T Consensus 377 ---g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 377 ---GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 2456677778787877776665454433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=1.4e-12 Score=136.33 Aligned_cols=178 Identities=16% Similarity=0.153 Sum_probs=149.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhc--cchHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYV--GRYRMIGFGCFTC 94 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~--Grk~~~~~~~~~~ 94 (539)
|.++..++..++..+.++++..+++.|+++.+|++..+++++.+...++..++.++.|+++|| + |||+.+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 556677778888889999999999999998899999999999999999999999999999999 6 8999888887766
Q ss_pred H-HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 95 L-LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 95 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
. ++.++..+.. ..+.+.+.+..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 5 5544444321 11456677777888998888888889999999998 45999
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhc
Q 009231 174 YFSWYYVFVSA-SSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLA 223 (539)
Q Consensus 174 ~~~~~~~~~~l-g~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~ 223 (539)
++++.+...++ |..++|.+.|++.++.||+..|++.++..+++.+..+..
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999888777766655443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.35 E-value=1.4e-11 Score=128.25 Aligned_cols=168 Identities=11% Similarity=0.055 Sum_probs=137.5
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHH-hhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILY-LCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 95 (539)
|.++..++..++....++++..+++.| +++.+|++..+++.+.+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 556666667777888888889999999 8888899999999999999999999999999999997 99999999999888
Q ss_pred HHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 96 LGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 96 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
++.++..+.. +... .+..++.+++.+...|...++..|.+|+ + ++.+.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776544 3333 3344788899999999999999999886 2 45556
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccc-chhhhHHHHHHHHHHHH
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQDNLG-WKVGFGVPAVIMLLSAL 218 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~f~i~~~~~l~~~~ 218 (539)
++.. ...+|..++|.+.|++.++.| ++..|++.++..++..+
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999988 99999987665444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.30 E-value=9.5e-12 Score=129.62 Aligned_cols=168 Identities=8% Similarity=0.022 Sum_probs=126.7
Q ss_pred HHHHHHhhcchhhHHHHhhhhccC---ChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 009231 27 AFERMATVGFTPNMILYLCREYNM---ETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLGMVLLWS 103 (539)
Q Consensus 27 ~~~~~~~~~~~~~l~~yl~~~lg~---s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~~~l~~~ 103 (539)
+.....++.....++.|+.+.++. +..+.+...+...++..++.++.|+++||+ |||+++..+.++.+++.++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556688888766653 345567777777778888999999999997 9999999888887777655553
Q ss_pred hhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhHHHHH-HHHHH
Q 009231 104 TTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYFSW-YYVFV 182 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 182 (539)
.. +.+.+++...+.+++.+...+...++++|.+|+ +.|++++++ ++...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 32 445566666667777776677778899999998 568999888 47777
Q ss_pred HHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCC
Q 009231 183 SASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASP 225 (539)
Q Consensus 183 ~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~ 225 (539)
.+|..++|.++|++.++.|+...|.+.++..+++.++.+...+
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999988889999998888877777666554333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=1.8e-10 Score=121.95 Aligned_cols=186 Identities=10% Similarity=0.001 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHH-----HHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIG-----FGCF 92 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-----~~~~ 92 (539)
......+..++....++.....++.|..+.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555566667777888888999999998999878888888889999999999999999997 9986654 6766
Q ss_pred HHHHHHHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhh
Q 009231 93 TCLLGMVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQ 172 (539)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~ 172 (539)
+.+++..++........ .....+.+.+.+..++.+++.+...|...+++.|.+|++. |+
T Consensus 363 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~-------~g 421 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF-------NS 421 (491)
T ss_dssp HHHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC-------SS
T ss_pred HHHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH-------HH
Confidence 66666655554321000 0011245667777888999999999999999999999954 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 173 SYFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 173 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
++.++++...++|..++|.+.+++.+ .++...|.+.+...+++.++.+...++
T Consensus 422 ~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 422 QMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp SSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888865 467778888877777666666555444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.89 E-value=6.2e-08 Score=102.28 Aligned_cols=181 Identities=9% Similarity=0.055 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHHHHHH
Q 009231 18 TLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFTCLLG 97 (539)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~~~ 97 (539)
.........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 333333344444443333334444556678888888888888888889999999999999997 9999999999888888
Q ss_pred HHHHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHH--HHHhhccCccccchhhhcccCCCCCCCccchhhhHHH
Q 009231 98 MVLLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFG--LMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQSYF 175 (539)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~~~ 175 (539)
.+.++....... .....++... ..+++ ....|....+.+|.+|. +.|+++.
T Consensus 356 ~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt-------~~R~~~~ 408 (491)
T 4gc0_A 356 MFSLGTAFYTQA-------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPN-------AIRGKAL 408 (491)
T ss_dssp HHHHHHHHHTTC-------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCT-------TTHHHHH
T ss_pred HHHHHHHHhccc-------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCH-------hHHHHHH
Confidence 777665431111 1122222222 22222 23456778899999999 4599999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc------cccchhhhHHHHHHHHHHHHHHHhcCCc
Q 009231 176 SWYYVFVSASSIVAVTCIVYIQD------NLGWKVGFGVPAVIMLLSALSFFLASPF 226 (539)
Q Consensus 176 ~~~~~~~~lg~~~g~~i~~~l~~------~~g~~~~f~i~~~~~l~~~~~~~~~~~~ 226 (539)
++.+...++++.+++.+.+.+.+ ..++...|++.+.+.+++.+..++..|+
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999887776643 2456667888888777777766665554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.78 E-value=1.6e-09 Score=110.44 Aligned_cols=163 Identities=8% Similarity=-0.033 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHhhcchhhHHHHhhhhccCChhHHHHHHHHHHHHHHhhHHHHHHHHHhhccchHHHHHHHHH-HH
Q 009231 17 RTLPFIIANEAFERMATVGFTPNMILYLCREYNMETTAATNIIFIWTAATNFLPIVGALLADSYVGRYRMIGFGCFT-CL 95 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~~~i~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~-~~ 95 (539)
|.++...+..++...++++...+++.|+++++|+++.+++.+.....++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 3455666677778888888999999999988999999999999999999999999999999997 872 2333322 22
Q ss_pred HHHH--HHHHhhccCCCCCCCcccccCCCCCCCccchHHHHHHHHHHHhhccCccccchhhhcccCCCCCCCccchhhhH
Q 009231 96 LGMV--LLWSTTILPGAKPPACDQLRNGCESATWSQLMPLYFAFGLMSLGSGGIRSSSLAFGAEQLDKGDGTKSKGALQS 173 (539)
Q Consensus 96 ~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~i~~~~~~~~~~~~~~~r~~ 173 (539)
.+.. ...... ..+.+.+++..++.+++.+...|...+++.|..| ++ |++
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~-------~g~ 326 (375)
T 2gfp_A 276 AGLLMWIPDWFG---------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL-------AGT 326 (375)
T ss_dssp TSSSSSHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH-------HHH
T ss_pred HHHHHHHHhhhc---------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc-------cch
Confidence 2222 111111 0145556677888999999999999999999987 33 899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccchhhhHHHHH
Q 009231 174 YFSWYYVFVSASSIVAVTCIVYIQDNLGWKVGFGVPAV 211 (539)
Q Consensus 174 ~~~~~~~~~~lg~~~g~~i~~~l~~~~g~~~~f~i~~~ 211 (539)
+.++.+...++|..++|.+.+.+.+..+|...+.+.+.
T Consensus 327 ~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 327 AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999999999887788877766433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=2.4e-05 Score=83.05 Aligned_cols=122 Identities=16% Similarity=0.002 Sum_probs=91.6
Q ss_pred HHhhhhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccccccchHHHHHHHHHHHHHHHHHHh
Q 009231 352 PLASKIKGKPCQL-SLKLRMGIGLLFSTASMTAWAIVEAARRSIAINEGISDDLRAVVQMSAMWQLPYLVLSGLAMAFNM 430 (539)
Q Consensus 352 ~l~~k~~~~~~~~-~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~ 430 (539)
++.+++.+| . ++++.+.++.++.+++.+...+.. .+.+.++...++.|++.+...
T Consensus 72 ~~~G~l~dr---~~g~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~~~ 127 (524)
T 2xut_A 72 LLGGWIADR---FFGKYNTILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGGIK 127 (524)
T ss_dssp HHHHHHHTT---SSCSHHHHHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHH---HhcchHHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccccc
Confidence 334455555 6 777889999999888877765431 146667777889999999999
Q ss_pred hhhhhhhhccCCchhhhHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHHHH
Q 009231 431 IGQTEFYYTELPKSMSSIASTL---SGAGLSAANLVASLIMNAVDDITKRGGNGGWIPSNINKGHYDYYYWLLTALSMAN 507 (539)
Q Consensus 431 ~~~~~~~~~~~P~~~rg~~~gi---~~~~~~ig~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~ 507 (539)
|....++.+..|++.|++++++ ++...++|..+|+.+.+.+.+.. ++...|++.+++.+++
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g~~~~f~~~~~~~~~~ 191 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------GAAVAFGIPGVLMFVA 191 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHHHH
Confidence 9999999999999999887777 88888999999998877665322 2466777777776666
Q ss_pred HHHHHH
Q 009231 508 FLYYLA 513 (539)
Q Consensus 508 ~~~~~~ 513 (539)
.+.++.
T Consensus 192 ~~~~~~ 197 (524)
T 2xut_A 192 TVFFWL 197 (524)
T ss_dssp HHHHHS
T ss_pred HHHHHH
Confidence 555443
Done!