BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009232
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1G|A Chain A, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
pdb|2D1G|B Chain B, Structure Of Francisella Tularensis Acid Phosphatase A
(Acpa) Bound To Orthovanadate
Length = 498
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 69/192 (35%), Gaps = 47/192 (24%)
Query: 21 IISSQPLDFDNLHKSHHKI---------QGPIKTVVVLIMENRSFDHILGWL-------- 63
+ +S+P D+ L K K+ PIK VV++ EN SFD G
Sbjct: 3 VNNSKPNDYGTLVKIEQKLFNNANTLKTTTPIKHVVIIFQENNSFDRYFGMYPNAKNPEG 62
Query: 64 ------KSTRPDIDGLTGK--ESNSVNISDPKSPKVFVSDDAIFVDSDPGHSFQAIREQI 115
K P+++GLT + E+N P + + D +FQ +
Sbjct: 63 EPKFVAKENTPNVNGLTKQLLENN------PNTKNPYRLD----------RNFQPCSQNH 106
Query: 116 FGSNVISPNSAPMMNGFVQQAMSMDPDMAR-----TVMSGFKPEVIPIYTELANEFAVFD 170
IS + +MN FV+ D D + VM + + A FA+ D
Sbjct: 107 EYHQEISSFNGGLMNKFVEHG-GHDNDTYKQNCDGQVMGYYDGNTVTALWNYAQNFALND 165
Query: 171 RWFASVPSSTQP 182
F + + P
Sbjct: 166 NTFGTTFGPSTP 177
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 295 QRFVKEVYETLRSSPQWNEMAFLITYDEHGGFFDXXXXXXXXXXXXDGVIGPDPFFFRFD 354
Q ++ ++ S W+ A +I YD+ G +D G G
Sbjct: 360 QEWLVNTINRIQQSKDWDSTAIIIIYDDSDGDYDHVYSPKSQFSDIKGRQG--------- 410
Query: 355 RLGVRVPTLLISPWIDKGTVIH 376
G R+P L+ISP+ V H
Sbjct: 411 -YGPRLPMLVISPYAKANYVDH 431
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 202 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 231
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 181 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 210
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 85 DPKSPKVFVSDDAIFVDSDPGHSFQAIREQ 114
DPK KVFV D+A + + GH Q+IR Q
Sbjct: 165 DPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 425 KTPRDDCPVTLPEVTRSLR----PWGPREDKELSEFQVELIQLAAQLVGDY 471
K+ R+D T+ E++R PW PR +EL F +++ A+L D+
Sbjct: 96 KSLRNDIGATVHELSRDKEKNTVPWFPRTIQELDRFANQILSYGAELDADH 146
>pdb|2B7H|B Chain B, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
pdb|2B7H|D Chain D, Hemoglobin From Cerdocyon Thous, A Canidae From Brazil, At
2.2 Angstroms Resolution
Length = 146
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 363 LLISPWIDKGTVIHGSNGPTPHSEFEHSSIPATVKKLFNLKSNFLTKRDAWAGTFEKFLQ 422
L++ PW + G + TP S ++ + A KK+ N S+ L D GTF K +
Sbjct: 32 LIVYPWTQRFFDSFG-DLSTPDSVMSNAKVKAHGKKVLNSFSDGLKNLDNLKGTFAKLSE 90
Query: 423 L 423
L
Sbjct: 91 L 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,492,954
Number of Sequences: 62578
Number of extensions: 687849
Number of successful extensions: 1437
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1429
Number of HSP's gapped (non-prelim): 10
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)