Query 009233
Match_columns 539
No_of_seqs 327 out of 2175
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 22:03:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 2E-134 4E-139 1082.8 50.3 532 1-533 1-536 (536)
2 PLN02518 pheophorbide a oxygen 100.0 6.1E-49 1.3E-53 428.9 31.8 314 211-533 84-438 (539)
3 PLN00095 chlorophyllide a oxyg 100.0 2E-49 4.4E-54 410.5 25.2 272 211-490 66-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 2.8E-39 6.1E-44 340.5 23.6 312 178-523 5-356 (367)
5 TIGR03229 benzo_1_2_benA benzo 100.0 7.5E-35 1.6E-39 312.1 19.5 179 177-374 15-220 (433)
6 TIGR03228 anthran_1_2_A anthra 100.0 5.9E-34 1.3E-38 305.1 12.9 180 177-374 15-218 (438)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 2.2E-30 4.8E-35 235.4 12.7 122 204-325 4-125 (129)
8 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 1.4E-29 3E-34 234.3 12.9 132 201-332 5-142 (144)
9 cd03537 Rieske_RO_Alpha_PrnD T 100.0 2.1E-29 4.5E-34 227.2 12.1 109 216-325 2-119 (123)
10 cd04338 Rieske_RO_Alpha_Tic55 100.0 3.7E-29 7.9E-34 228.9 12.6 115 211-325 11-130 (134)
11 cd03531 Rieske_RO_Alpha_KSH Th 100.0 4E-28 8.6E-33 216.4 12.2 109 217-325 1-111 (115)
12 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 5.4E-28 1.2E-32 222.3 11.3 113 213-325 13-134 (138)
13 cd03532 Rieske_RO_Alpha_VanA_D 99.9 9.9E-28 2.2E-32 214.0 11.8 110 214-324 2-113 (116)
14 cd03545 Rieske_RO_Alpha_OHBDO_ 99.9 1.5E-27 3.4E-32 222.2 11.9 130 179-325 3-148 (150)
15 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 5.5E-27 1.2E-31 215.0 12.5 112 212-324 9-127 (136)
16 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 1.3E-26 2.8E-31 207.7 11.2 108 217-324 1-115 (118)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 1.2E-26 2.5E-31 211.1 10.7 108 218-325 1-127 (129)
18 cd03469 Rieske_RO_Alpha_N Ries 99.9 3.3E-26 7.1E-31 203.5 10.7 107 218-324 1-115 (118)
19 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 3.9E-26 8.4E-31 207.4 11.3 114 212-325 3-126 (128)
20 cd03538 Rieske_RO_Alpha_AntDO 99.9 1.3E-25 2.9E-30 208.3 11.6 126 183-325 5-144 (146)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 2.1E-25 4.6E-30 201.1 11.3 110 216-325 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 4.4E-25 9.6E-30 199.0 11.0 108 218-325 1-119 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 2.6E-24 5.7E-29 185.3 10.9 96 218-318 1-97 (98)
24 cd03530 Rieske_NirD_small_Baci 99.9 3.2E-24 6.9E-29 185.3 10.9 97 218-319 1-98 (98)
25 cd03474 Rieske_T4moC Toluene-4 99.9 4.8E-24 1E-28 187.4 11.9 103 218-325 1-104 (108)
26 cd03542 Rieske_RO_Alpha_HBDO R 99.9 6.2E-24 1.3E-28 191.7 11.4 108 218-325 1-121 (123)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 2.2E-23 4.8E-28 181.6 11.1 100 217-320 1-101 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 3.1E-23 6.7E-28 181.1 10.4 97 218-319 1-103 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 3.6E-23 7.8E-28 181.1 10.1 99 217-320 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 1.2E-22 2.6E-27 178.4 10.5 101 217-323 2-104 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.1E-22 2.3E-27 174.8 9.6 93 220-317 2-95 (95)
32 PF13806 Rieske_2: Rieske-like 99.8 3.6E-21 7.9E-26 168.8 10.3 98 217-319 1-104 (104)
33 PF00355 Rieske: Rieske [2Fe-2 99.8 4.4E-21 9.5E-26 164.8 8.7 93 217-314 1-97 (97)
34 PRK09511 nirD nitrite reductas 99.8 8.9E-21 1.9E-25 167.4 10.7 98 217-319 3-107 (108)
35 cd03467 Rieske Rieske domain; 99.8 2.1E-20 4.5E-25 161.2 10.5 95 218-316 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.8 3.5E-20 7.6E-25 163.1 10.6 101 216-320 3-105 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 8.5E-20 1.8E-24 156.4 9.4 88 221-313 2-89 (91)
38 cd03476 Rieske_ArOX_small Smal 99.8 3.1E-18 6.8E-23 155.2 10.1 95 220-319 5-114 (126)
39 cd08878 RHO_alpha_C_DMO-like C 99.7 1.8E-17 3.8E-22 156.8 14.2 171 345-522 5-195 (196)
40 cd03471 Rieske_cytochrome_b6f 99.7 3.6E-17 7.8E-22 147.8 10.6 90 229-323 22-114 (126)
41 TIGR02694 arsenite_ox_S arseni 99.7 2.9E-16 6.3E-21 142.8 9.8 94 220-318 8-115 (129)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.6 5.2E-16 1.1E-20 135.7 7.7 72 224-296 14-89 (107)
43 cd03470 Rieske_cytochrome_bc1 99.6 1.3E-15 2.9E-20 138.1 10.5 92 223-318 5-125 (126)
44 cd00680 RHO_alpha_C C-terminal 99.6 2.6E-14 5.6E-19 134.2 15.4 161 344-522 3-186 (188)
45 PRK13474 cytochrome b6-f compl 99.5 6.1E-14 1.3E-18 134.4 10.0 89 227-320 72-163 (178)
46 cd08885 RHO_alpha_C_1 C-termin 99.5 9.5E-13 2.1E-17 126.1 16.6 162 343-521 3-187 (190)
47 cd08887 RHO_alpha_C_3 C-termin 99.4 3E-12 6.5E-17 121.6 13.8 161 344-522 4-183 (185)
48 cd08883 RHO_alpha_C_CMO-like C 99.4 5.8E-12 1.3E-16 119.8 15.1 159 343-522 3-173 (175)
49 TIGR01416 Rieske_proteo ubiqui 99.4 2.1E-12 4.6E-17 123.4 10.7 94 217-315 40-169 (174)
50 cd08884 RHO_alpha_C_GbcA-like 99.4 1.4E-11 3E-16 120.3 15.1 167 337-521 7-202 (205)
51 cd08886 RHO_alpha_C_2 C-termin 99.3 3E-11 6.5E-16 115.9 14.0 160 343-521 3-181 (182)
52 PF00848 Ring_hydroxyl_A: Ring 99.2 2.1E-11 4.5E-16 115.8 7.8 159 345-522 11-206 (209)
53 cd03475 Rieske_SoxF_SoxL SoxF 99.1 5.7E-10 1.2E-14 105.7 10.3 67 248-318 73-158 (171)
54 PF08417 PaO: Pheophorbide a o 98.8 1.3E-08 2.9E-13 87.3 8.0 88 405-503 1-91 (92)
55 cd08880 RHO_alpha_C_ahdA1c-lik 98.8 6E-08 1.3E-12 96.2 12.1 32 344-375 4-37 (222)
56 COG0723 QcrA Rieske Fe-S prote 98.7 3.1E-08 6.7E-13 94.9 6.6 76 239-318 83-164 (177)
57 cd08882 RHO_alpha_C_MupW-like 98.6 3.4E-07 7.5E-12 92.0 10.4 84 438-522 147-241 (243)
58 cd08879 RHO_alpha_C_AntDO-like 98.4 5.3E-07 1.1E-11 90.3 8.1 31 344-374 4-34 (237)
59 cd08881 RHO_alpha_C_NDO-like C 98.4 1.6E-06 3.4E-11 85.2 9.4 33 343-375 8-41 (206)
60 TIGR03171 soxL2 Rieske iron-su 98.3 1.2E-06 2.7E-11 90.0 7.2 69 247-319 173-276 (321)
61 KOG1671 Ubiquinol cytochrome c 98.3 9.2E-07 2E-11 84.8 5.2 73 224-296 92-190 (210)
62 PF11723 Aromatic_hydrox: Homo 98.1 9.6E-06 2.1E-10 80.1 8.8 184 336-525 21-238 (240)
63 KOG1336 Monodehydroascorbate/f 94.6 0.019 4.2E-07 62.5 2.2 38 261-298 1-39 (478)
64 PRK14127 cell division protein 77.1 6.6 0.00014 35.1 5.9 42 105-149 27-68 (109)
65 PRK14161 heat shock protein Gr 71.4 19 0.00041 34.9 8.0 55 98-158 12-66 (178)
66 PF13118 DUF3972: Protein of u 65.7 17 0.00037 33.3 5.9 49 96-144 69-118 (126)
67 TIGR02449 conserved hypothetic 60.5 39 0.00085 27.4 6.5 58 102-159 5-62 (65)
68 PF07820 TraC: TraC-like prote 60.1 48 0.001 28.7 7.3 26 117-142 1-26 (92)
69 PRK14156 heat shock protein Gr 58.8 41 0.0009 32.6 7.6 55 103-158 20-74 (177)
70 PRK00888 ftsB cell division pr 55.7 33 0.00072 30.3 5.9 50 119-168 28-77 (105)
71 PF04977 DivIC: Septum formati 55.5 33 0.00071 27.7 5.6 52 116-167 15-66 (80)
72 PRK03578 hscB co-chaperone Hsc 55.4 66 0.0014 31.0 8.4 88 72-162 57-164 (176)
73 COG1645 Uncharacterized Zn-fin 55.4 8.6 0.00019 35.4 2.2 29 255-286 27-55 (131)
74 PF09740 DUF2043: Uncharacteri 53.7 7.7 0.00017 34.7 1.5 26 263-288 73-100 (110)
75 PF10080 DUF2318: Predicted me 53.5 1E+02 0.0022 27.3 8.5 80 227-320 2-92 (102)
76 PF11932 DUF3450: Protein of u 51.3 83 0.0018 31.7 8.8 29 229-257 178-208 (251)
77 PRK14549 50S ribosomal protein 50.5 59 0.0013 26.5 6.2 46 118-163 12-62 (69)
78 PRK00294 hscB co-chaperone Hsc 49.9 80 0.0017 30.4 8.0 91 70-163 53-162 (173)
79 PF09538 FYDLN_acid: Protein o 48.8 10 0.00022 33.8 1.6 31 256-288 9-39 (108)
80 PF11559 ADIP: Afadin- and alp 48.4 1.1E+02 0.0023 28.3 8.5 87 68-158 27-113 (151)
81 COG1938 Archaeal enzymes of AT 47.5 37 0.00079 34.6 5.4 49 102-150 188-236 (244)
82 PF13334 DUF4094: Domain of un 46.9 15 0.00032 32.0 2.2 32 108-139 63-94 (95)
83 PF10392 COG5: Golgi transport 46.5 96 0.0021 28.2 7.7 69 69-144 26-105 (132)
84 PF06005 DUF904: Protein of un 45.5 1E+02 0.0022 25.5 6.8 33 125-157 39-71 (72)
85 PF13094 CENP-Q: CENP-Q, a CEN 41.8 1.3E+02 0.0029 28.1 8.1 51 113-163 36-86 (160)
86 PF05278 PEARLI-4: Arabidopsis 41.4 1.1E+02 0.0024 31.6 7.8 40 120-159 202-241 (269)
87 PF07282 OrfB_Zn_ribbon: Putat 41.4 21 0.00045 28.5 2.2 33 255-288 27-59 (69)
88 cd00427 Ribosomal_L29_HIP Ribo 40.8 83 0.0018 24.5 5.4 28 118-145 6-33 (57)
89 PRK04654 sec-independent trans 38.2 1.2E+02 0.0026 30.2 7.2 58 98-156 35-92 (214)
90 PRK00420 hypothetical protein; 37.1 25 0.00054 31.6 2.2 31 255-287 22-52 (112)
91 PF08606 Prp19: Prp19/Pso4-lik 37.0 90 0.002 25.7 5.2 21 121-141 25-45 (70)
92 PF05546 She9_MDM33: She9 / Md 36.8 1E+02 0.0022 30.6 6.5 49 109-158 24-72 (207)
93 PF07743 HSCB_C: HSCB C-termin 36.3 2.3E+02 0.0051 22.9 7.9 33 97-131 8-40 (78)
94 PRK01773 hscB co-chaperone Hsc 35.9 1.7E+02 0.0037 28.1 7.9 87 72-162 53-160 (173)
95 PRK09039 hypothetical protein; 35.8 1.5E+02 0.0032 31.6 8.2 15 138-152 171-185 (343)
96 TIGR02209 ftsL_broad cell divi 35.4 1E+02 0.0022 25.4 5.5 47 119-166 25-71 (85)
97 PF10186 Atg14: UV radiation r 34.3 1.8E+02 0.0039 29.3 8.4 42 116-157 54-95 (302)
98 PF03195 DUF260: Protein of un 33.8 46 0.001 29.3 3.3 48 91-141 52-101 (101)
99 PRK14147 heat shock protein Gr 33.3 1.3E+02 0.0029 28.9 6.6 39 120-158 27-65 (172)
100 PF11572 DUF3234: Protein of u 33.2 16 0.00035 31.6 0.3 52 212-267 3-54 (103)
101 PRK11637 AmiB activator; Provi 32.2 1.6E+02 0.0035 32.0 8.0 33 119-151 90-122 (428)
102 TIGR00219 mreC rod shape-deter 32.0 99 0.0021 32.0 6.0 54 104-157 52-105 (283)
103 COG1842 PspA Phage shock prote 32.0 2E+02 0.0044 28.9 7.9 69 101-169 14-82 (225)
104 PRK09039 hypothetical protein; 31.2 1.7E+02 0.0037 31.2 7.7 60 104-163 123-182 (343)
105 PF05377 FlaC_arch: Flagella a 30.9 65 0.0014 25.3 3.3 32 108-139 4-35 (55)
106 PRK14164 heat shock protein Gr 30.9 1.5E+02 0.0031 29.8 6.6 41 118-158 77-117 (218)
107 PRK14141 heat shock protein Gr 30.1 1.5E+02 0.0033 29.5 6.6 39 120-158 40-78 (209)
108 PRK14157 heat shock protein Gr 29.7 1.6E+02 0.0034 29.8 6.6 39 120-158 86-124 (227)
109 TIGR00595 priA primosomal prot 28.6 54 0.0012 36.8 3.6 52 239-291 198-256 (505)
110 PRK14139 heat shock protein Gr 28.6 1.7E+02 0.0038 28.5 6.6 39 120-158 41-79 (185)
111 PF15155 MRFAP1: MORF4 family- 28.0 1.2E+02 0.0026 27.1 4.8 49 104-162 12-64 (127)
112 TIGR02300 FYDLN_acid conserved 27.9 36 0.00077 31.3 1.6 31 256-288 9-39 (129)
113 PF14803 Nudix_N_2: Nudix N-te 27.9 39 0.00085 23.8 1.5 28 257-284 1-31 (34)
114 PRK14155 heat shock protein Gr 27.6 1.8E+02 0.0039 28.9 6.6 39 120-158 22-60 (208)
115 PF13815 Dzip-like_N: Iguana/D 27.1 75 0.0016 28.4 3.6 7 84-90 38-44 (118)
116 TIGR03228 anthran_1_2_A anthra 27.1 3.1E+02 0.0066 30.4 9.0 58 438-499 318-382 (438)
117 KOG1594 Uncharacterized enzyme 27.1 78 0.0017 32.7 4.0 57 17-73 60-117 (305)
118 PRK14151 heat shock protein Gr 27.1 2E+02 0.0042 27.9 6.6 39 120-158 29-67 (176)
119 COG0497 RecN ATPase involved i 26.2 1.7E+02 0.0037 33.4 6.9 57 98-154 322-378 (557)
120 PF08317 Spc7: Spc7 kinetochor 25.9 2E+02 0.0044 30.2 7.2 19 217-240 293-311 (325)
121 PRK14163 heat shock protein Gr 25.8 2E+02 0.0042 28.9 6.5 39 120-158 49-87 (214)
122 PF06148 COG2: COG (conserved 25.7 1.3E+02 0.0028 27.2 5.0 46 113-158 64-109 (133)
123 COG1096 Predicted RNA-binding 25.7 1.4E+02 0.0031 29.2 5.4 57 224-284 116-174 (188)
124 KOG0980 Actin-binding protein 25.3 2.2E+02 0.0047 34.1 7.6 81 69-157 445-533 (980)
125 PF14446 Prok-RING_1: Prokaryo 25.2 32 0.00069 26.9 0.7 25 272-296 18-47 (54)
126 PRK10884 SH3 domain-containing 24.8 1.5E+02 0.0032 29.4 5.5 45 111-157 88-132 (206)
127 PRK14162 heat shock protein Gr 24.5 1.9E+02 0.0042 28.4 6.2 39 120-158 48-86 (194)
128 PRK14159 heat shock protein Gr 23.9 2.2E+02 0.0047 27.6 6.3 41 118-158 30-70 (176)
129 PF13863 DUF4200: Domain of un 23.8 3.3E+02 0.0072 24.0 7.2 54 98-151 54-107 (126)
130 PRK14149 heat shock protein Gr 23.7 2.4E+02 0.0053 27.7 6.6 39 120-158 45-83 (191)
131 PF00831 Ribosomal_L29: Riboso 23.5 2.5E+02 0.0055 21.9 5.5 27 118-144 7-33 (58)
132 smart00549 TAFH TAF homology. 23.3 1.4E+02 0.0029 26.0 4.2 39 98-137 41-79 (92)
133 PF07730 HisKA_3: Histidine ki 23.1 1.5E+02 0.0032 23.0 4.3 17 101-117 8-24 (68)
134 PRK14154 heat shock protein Gr 23.0 2.5E+02 0.0054 28.0 6.6 39 120-158 61-99 (208)
135 PRK00461 rpmC 50S ribosomal pr 22.9 2.9E+02 0.0063 23.7 6.2 51 118-168 8-62 (87)
136 PF08537 NBP1: Fungal Nap bind 22.9 2E+02 0.0044 30.4 6.2 46 119-164 176-221 (323)
137 PF12761 End3: Actin cytoskele 22.8 80 0.0017 31.1 3.1 22 122-143 100-121 (195)
138 PRK00306 50S ribosomal protein 22.4 2.9E+02 0.0063 22.1 5.8 26 118-143 9-34 (66)
139 KOG4403 Cell surface glycoprot 22.3 1.7E+02 0.0037 32.2 5.7 66 76-141 196-275 (575)
140 PRK14146 heat shock protein Gr 22.2 2.5E+02 0.0054 28.1 6.5 39 120-158 63-101 (215)
141 COG3551 Uncharacterized protei 22.0 2.8E+02 0.0061 29.4 6.9 75 74-151 252-328 (402)
142 PF00261 Tropomyosin: Tropomyo 21.6 2.2E+02 0.0048 28.5 6.1 61 98-158 177-237 (237)
143 PRK14143 heat shock protein Gr 21.4 2.7E+02 0.0058 28.3 6.7 39 120-158 76-114 (238)
144 PRK05014 hscB co-chaperone Hsc 21.4 4.2E+02 0.0091 25.3 7.7 89 70-162 50-159 (171)
145 PRK14148 heat shock protein Gr 21.2 2.9E+02 0.0062 27.2 6.6 39 120-158 49-87 (195)
146 COG3027 zapA Cell division pro 20.8 1.8E+02 0.0038 25.8 4.6 33 126-158 62-98 (105)
147 PRK14158 heat shock protein Gr 20.6 3E+02 0.0066 27.0 6.6 39 120-158 49-87 (194)
148 PRK05580 primosome assembly pr 20.4 92 0.002 36.3 3.5 34 257-291 391-424 (679)
149 COG5570 Uncharacterized small 20.2 1.5E+02 0.0032 23.2 3.4 42 101-142 16-57 (57)
150 PF05529 Bap31: B-cell recepto 20.0 79 0.0017 30.5 2.5 22 120-141 156-177 (192)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=1.8e-134 Score=1082.84 Aligned_cols=532 Identities=76% Similarity=1.303 Sum_probs=472.8
Q ss_pred Cc-ccccccccccccccc--cccccccccccccceEEEEEecCCCccccccccceeeeeccCCCCCCCCCCCceeehhhH
Q 009233 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (539)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (539)
|| +++|+++||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 67 499999999999998 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
|||+||||||||||||||+||||.+|+||||||||||||+|||||||||||||||||+|||+|||+||+||+++||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCccccc-ccccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeEEEE
Q 009233 158 MEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFD 236 (539)
Q Consensus 158 ~e~~~~~r~l~~~sa~~~-~~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~~g~~~~~~ 236 (539)
||.++|+|||++++.+++ .|.+..++ ++..++..+++.+++++..++|++||...++|+||+||.++||++|+++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~ 239 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTA-SAVELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIE 239 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcC-cchhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEE
Confidence 999999999998766655 55555544 4477888899999999999999999999999999999999999989999999
Q ss_pred ECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecCeE
Q 009233 237 CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMI 316 (539)
Q Consensus 237 l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~~G~I 316 (539)
++|++|+|||+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|+.+....++++|||+|++|+|
T Consensus 240 llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV 319 (536)
T PLN02281 240 CFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMI 319 (536)
T ss_pred ECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999876556889999999999999
Q ss_pred EEcCCCCCCCCCCCCCCCCCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCceeeeecCCCCCCccc
Q 009233 317 WIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYW 396 (539)
Q Consensus 317 wV~l~~~~p~~~lp~~~~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~~~~p~~~~~g~~ 396 (539)
|||++++++++.+|.+..+.++.......+++++||++++||++|+||++|+|.++++..+..+..+....+...+.++|
T Consensus 320 wV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~~~~~~~p~~ 399 (536)
T PLN02281 320 WIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPTSGLQGYW 399 (536)
T ss_pred EEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEecccCCCCccc
Confidence 99998765545566665544666555557899999999999999999999999999998766666555544444455566
Q ss_pred cCCCceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHH
Q 009233 397 DPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHF 476 (539)
Q Consensus 397 ~~~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~ 476 (539)
...+..++|.+||++...+++..+|...+......+.++..+|.+||+++++||+||.+.+||.++.+..++...++..+
T Consensus 400 ~~~pv~~~f~aP~~v~l~i~~~~~G~~~~~~~~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~~~d~~~~~~~l~~~ 479 (536)
T PLN02281 400 DPYPIDMEFKPPCIVLSTIGISKPGKLEGKSTQQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPILKNLPFMEHLWRHF 479 (536)
T ss_pred ccCCceEEEECcEEEEEeeccccCCccccccccccccceEEEEEEEECCCCeEEEEEEecccCccccccccchHHHHHHH
Confidence 55555789999999988888777765433233344456678899999999999999999999977643344444446667
Q ss_pred HHHHHhhhHHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009233 477 AEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 533 (539)
Q Consensus 477 ~~~V~~ED~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~l~~g~~~~p~~~ 533 (539)
...+|.||+.|+|+||+.+...+..+++++++|+++++||||+++++++.+++||++
T Consensus 480 ~~~vF~ED~~iLEaQQ~~i~~~~~~~~l~l~aD~~~v~~RRWl~~~~~~~~~~pf~~ 536 (536)
T PLN02281 480 AEQVLNEDLRLVLGQQERMLNGANIWNLPVAYDKLGVRYRLWRNAVDRGDDKLPFSG 536 (536)
T ss_pred hhHhhHhHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHhhcccCCCCCCC
Confidence 889999999999999999998888889999999999999999999999999999984
No 2
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=6.1e-49 Score=428.86 Aligned_cols=314 Identities=21% Similarity=0.420 Sum_probs=227.9
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEeeccCCCCCCCCCCCccc-CCeeeccCCCeeEcCC
Q 009233 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTD 288 (539)
Q Consensus 211 ~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~-~dG~v~A~~n~CpHRGa~Ls~G~v~-~~~l~CPyHGW~Fd~~ 288 (539)
.-.+++.||+||.++||++|+++.++++|++|||||+ .+|+++||.|+|||||++|+.|.++ ++.|+||||||+||.+
T Consensus 84 ~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~~ 163 (539)
T PLN02518 84 KFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 163 (539)
T ss_pred hhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcCC
Confidence 4578999999999999988999999999999999998 8999999999999999999999986 6799999999999999
Q ss_pred CCccccCCccc----------ccccccccceEEecCeEEEcCCCCC----CCCCCCCC---CCCCCceeeeEEEEEeecc
Q 009233 289 GKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCL---LPPSGFEIHAEIVMELPIE 351 (539)
Q Consensus 289 G~c~~~P~~~~----------~~~~L~~~pv~e~~G~IwV~l~~~~----p~~~lp~~---~~~~~~~~~~~~~~~~~~n 351 (539)
|+|+.+|+.+. ...++++|||+|++|+||||++++. +...+|.+ .+.++|... ....+++++
T Consensus 164 G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~ 242 (539)
T PLN02518 164 GSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFYG 242 (539)
T ss_pred CCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEecC
Confidence 99999997421 2357999999999999999998642 12234433 223455432 345689999
Q ss_pred hhhHhhhcCCCCCCCCcCccccccCC-CCCceeeee-cCCCCCCcccc-CCCceeEEcCceeEEEEeeecCCCCcCCCCc
Q 009233 352 HGLLLDNLLDLAHAPFTHTSTFAKGW-SVPSLVKFL-TPASGLQGYWD-PYPIDMEFRPPCMVLSTIGISKPGKLEGQNT 428 (539)
Q Consensus 352 wk~~vEN~lD~~H~~~vH~~t~~~~~-~vp~~v~~~-~p~~~~~g~~~-~~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~ 428 (539)
|++++||++|++|++|+|++++|... ..+...+.. ....++.+.+. .....+.|.+||++...+++.......+
T Consensus 243 ~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~~~~~~--- 319 (539)
T PLN02518 243 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTKLPIVG--- 319 (539)
T ss_pred chhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeeccccCCC---
Confidence 99999999999999999999998642 112111111 11123333221 1224578999998776555431100000
Q ss_pred cccceeeEEEEEEecCCCCeEEEEEEeeccchhh-------ccCchhHHHHHHHHHHHHHhhhHHHHHHHhhhccCC-C-
Q 009233 429 RQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-------LKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNG-A- 499 (539)
Q Consensus 429 ~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~-------~~~~p~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g-~- 499 (539)
.....+...++++|+++++||++|.+.+||... .+.+|-... +...++|++||+.+|+.|++.+... .
T Consensus 320 -~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~--h~~~n~Vl~~D~~~lh~Qe~~~~~~~~e 396 (539)
T PLN02518 320 -DQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYE--HWTSNKVYDGDMIVLQGQEKIFLSKSGE 396 (539)
T ss_pred -CcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHH--HhhhccchHhHHHHHHHHHHHHhhcccc
Confidence 011223456778999999999999998887322 222332111 2236789999999999998876442 1
Q ss_pred ----------CCCCCcccCChHHHHHHHHHHHHHcCCCCCCCCC
Q 009233 500 ----------NVWNLPVGYDKLGVRYRLWRDALEKGAKQLPFMK 533 (539)
Q Consensus 500 ----------~~~el~~~aD~~~v~yRrwl~~l~~g~~~~p~~~ 533 (539)
..+++|+++|+.+++||+|+++++ +++.||..
T Consensus 397 ~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g--~g~~~w~~ 438 (539)
T PLN02518 397 GSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHG--NSQPEWFG 438 (539)
T ss_pred ccccchhhhhhhccCCCchhHHHHHHHHHHHHhC--cCCCCccc
Confidence 123689999999999999999986 44556644
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=2e-49 Score=410.51 Aligned_cols=272 Identities=37% Similarity=0.765 Sum_probs=226.2
Q ss_pred cccccCceEEeeecCCC-CCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCC
Q 009233 211 NTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 289 (539)
Q Consensus 211 ~~~~~~~W~~va~~~dL-~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G 289 (539)
+...++.||+||+++|| ++|+++.++++|++|+|||+.+|+++||.|.|||||++|+.|.++++.|+||||||+||.+|
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G 145 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG 145 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence 34568999999999999 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCccc--ccccccccceEEecCeEEEcCCCCCCCC------------------CCCC-CCCCCCceeeeEEEEEe
Q 009233 290 KCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMEL 348 (539)
Q Consensus 290 ~c~~~P~~~~--~~~~L~~~pv~e~~G~IwV~l~~~~p~~------------------~lp~-~~~~~~~~~~~~~~~~~ 348 (539)
+|+.+|+.+. .+.++++|||++++|+||||+++..|.. .+|. +.++++|..+.+..+|+
T Consensus 146 ~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dl 225 (394)
T PLN00095 146 ECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADI 225 (394)
T ss_pred CEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEec
Confidence 9999997532 3467899999999999999998654431 2333 34456888877777899
Q ss_pred ecchhhHhhhcCCCCC-CCCcCcccccc----C---CCCCceeeeecCCCCCCccccCCCceeEEcCceeEEEEeeecC-
Q 009233 349 PIEHGLLLDNLLDLAH-APFTHTSTFAK----G---WSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISK- 419 (539)
Q Consensus 349 ~~nwk~~vEN~lD~~H-~~~vH~~t~~~----~---~~vp~~v~~~~p~~~~~g~~~~~~~~~~f~~P~~vl~~~~~~~- 419 (539)
++.|.+++||+||++| .||+|+.||.- . +..+.... .....++.+.|+++|++|+|.+||++.+++++.+
T Consensus 226 p~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~-~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l~~~ 304 (394)
T PLN00095 226 KLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGT-KIIAKVLRGGRDAVPQSATFKPACVIASTIALEDG 304 (394)
T ss_pred cccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhh-hhhhhhheeecccCCcceeEcCceeeeeeeccccc
Confidence 9999999999999999 69999988851 1 11121111 1224567888999999999999999999999865
Q ss_pred CCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchh---hccCchhHHHHHHHHHHHHHhhhHHHHHH
Q 009233 420 PGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFAS---VLKHVPFMQYLWRHFAEQVLNEDLRLVLG 490 (539)
Q Consensus 420 pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~---~~~~~p~~~~~~~~~~~~V~~ED~~IlE~ 490 (539)
||+.. .|..|++++|+|.|.++++||++++|++||.. +...+|. ..|..++++|+.||++++.+
T Consensus 305 ~g~~~-----~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~~~~~~~~~~~--~~w~~~a~~vl~e~l~~v~~ 371 (394)
T PLN00095 305 PGGGD-----GTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVAVPEGAQAAAG--DVWANLAMMVLKEELEDVRA 371 (394)
T ss_pred CCCCc-----cccceeeeEEEEEecCCCceEEEEeecccccccHHHhHhchH--HHHHHHHHHHHHHHHHHHhc
Confidence 55432 35678999999999999999999999999975 5555664 78999999999999998753
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=340.47 Aligned_cols=312 Identities=25% Similarity=0.402 Sum_probs=213.4
Q ss_pred ccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeec
Q 009233 178 TCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQN 257 (539)
Q Consensus 178 ~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n 257 (539)
.+....++++.++.+...+ +.+.||+||+++||+++++++++++|+++||+|+.||+++||.|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-----------------~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d 67 (367)
T COG4638 5 LPPPFYTDPELFQLELERI-----------------FYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALAD 67 (367)
T ss_pred CCCccccCHHHHHHHHHHh-----------------hhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEec
Confidence 4455667777777776664 35699999999999988999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccC-CeeeccCCCeeEcCCCCccccCC--ccc----ccccccccceEEecCeEEEcCCCCCCCC---
Q 009233 258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPS--TQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA--- 327 (539)
Q Consensus 258 ~CpHRGa~Ls~G~v~~-~~l~CPyHGW~Fd~~G~c~~~P~--~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~--- 327 (539)
.|||||++|+.|.+.+ +.|+||||||+||++|+|+.+|. ... ...++++||+++++|+||||+++++++.
T Consensus 68 ~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~ 147 (367)
T COG4638 68 VCPHRGARLSEGRVGGKGRLTCPYHGWTYDLDGRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAF 147 (367)
T ss_pred cCCCCCchhccccCCCCceEecCCCceEECCCCcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHh
Confidence 9999999999999988 89999999999999999999994 221 2358999999999999999999876431
Q ss_pred CCCCCC-CCCCceee-eEEEEEeecchhhHhhhcCC-CCCCCCcCccccccCCCCC---ceee--------ee--cCCCC
Q 009233 328 TIPCLL-PPSGFEIH-AEIVMELPIEHGLLLDNLLD-LAHAPFTHTSTFAKGWSVP---SLVK--------FL--TPASG 391 (539)
Q Consensus 328 ~lp~~~-~~~~~~~~-~~~~~~~~~nwk~~vEN~lD-~~H~~~vH~~t~~~~~~vp---~~v~--------~~--~p~~~ 391 (539)
..|... ...++... ......+++|||.++||++| +||++++|.++.+...... ..+. .. .|...
T Consensus 148 ~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (367)
T COG4638 148 LPPAEPYEDDRSRLGGGSFTINVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQ 227 (367)
T ss_pred cccccccccccccccCceEEEEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccC
Confidence 112222 22223222 34567788999999998887 9999999998876532110 0000 00 00000
Q ss_pred CCccc-------cCC-----CceeEEcCcee-EEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeecc
Q 009233 392 LQGYW-------DPY-----PIDMEFRPPCM-VLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLD 458 (539)
Q Consensus 392 ~~g~~-------~~~-----~~~~~f~~P~~-vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~ 458 (539)
..+.. ... ...+.+..|+. +... ............|+++++|.+.......
T Consensus 228 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 291 (367)
T COG4638 228 PLGSEASSYGFDGNYEVHVPGAYLLFLYPNSTVWNH----------------VTVDDVIVFFVQPIDEDETMVTLVWLVL 291 (367)
T ss_pred CcchhhhccccccccccccCceeEEEEcCCchheee----------------ecccceeEEEEEecCCceeEEEeeeeec
Confidence 00000 000 00112222221 1000 0011123455799999999887654321
Q ss_pred chhhccCchhHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHH
Q 009233 459 FASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALE 523 (539)
Q Consensus 459 f~~~~~~~p~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~ 523 (539)
. ........+...++.+...++.||..|+|.||+++.+.+. ....+...|...+++|+|+.+..
T Consensus 292 ~-~~~~~~~~~~~~~~~~~~~~~~qD~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (367)
T COG4638 292 P-DLVEGVDYFDKLIRRFRQEILDQDREILENQQPGRLSPALERGPYPIREDAGSVQFRRWLAERL 356 (367)
T ss_pred c-chhhHHHHHHHHHHHHhccCcHHHHHHHHHHhcccccccccCCCccccccchhhHHHHHHHHHH
Confidence 1 1112223344555667788999999999999997766544 33467788999999999986554
No 5
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=7.5e-35 Score=312.05 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=148.7
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+....+|++.++.|++++| .+.|+.||+.+||+ +|++++++++|++|+|+|+.+|+++||
T Consensus 15 ~~~~~~Ytd~~~f~~E~~~IF-----------------~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af 77 (433)
T TIGR03229 15 RCKREMFTDPELFDLEMKHIF-----------------EGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAF 77 (433)
T ss_pred cCChhhcCCHHHHHHHHHHHh-----------------hhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEE
Confidence 467778899999999998875 66788999999998 589999999999999999999999999
Q ss_pred eccCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCccc----------ccccccccce-EEecCeEEEcCCCC
Q 009233 256 QNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSLPC-FEQEGMIWIWPGDE 323 (539)
Q Consensus 256 ~n~CpHRGa~Ls~G~-v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~----------~~~~L~~~pv-~e~~G~IwV~l~~~ 323 (539)
.|+|||||++|+.|. ++.+.|+||||||+||.+|+|+++|.... ...+|.+++. ..+.|+|||+++++
T Consensus 78 ~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~ 157 (433)
T TIGR03229 78 INACSHRGAMLCRHKRGNKTTYTCPFHGWTFNNSGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPD 157 (433)
T ss_pred eCcCCCCCCCcccccccCCCEEEcCCCCCEecCCcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCC
Confidence 999999999999875 56679999999999999999999987321 1357999974 55689999999876
Q ss_pred CCCCCCCCCCCC-------------CCceee-eEEEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009233 324 PPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (539)
Q Consensus 324 ~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 374 (539)
+| ++++++++ .++... ....++++||||+++||++|+||++++|.+++.
T Consensus 158 ~~--~l~e~Lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 220 (433)
T TIGR03229 158 VL--PLEEHLGETAKIIDMIVDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYAA 220 (433)
T ss_pred CC--CHHHHhhhHHHHHHHHhhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHHH
Confidence 54 34554432 233332 345778999999999999999999999987764
No 6
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=5.9e-34 Score=305.08 Aligned_cols=180 Identities=19% Similarity=0.313 Sum_probs=152.0
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+....+|++.++.|++++| .+.|+.||+++||+ +|+++++++++++|+|+|+.||+++||
T Consensus 15 ~v~~~~ytd~~if~~E~~~IF-----------------~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~ 77 (438)
T TIGR03228 15 RIARDMFTEPELFDLEMELIF-----------------EKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHAL 77 (438)
T ss_pred ecChheECCHHHHHHHHHHHH-----------------hhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEE
Confidence 466778899999999998875 67899999999998 499999999999999999999999999
Q ss_pred eccCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcc-------cccccccccceEEecCeEEEcCCCCCCCC
Q 009233 256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ-------LRNVKIKSLPCFEQEGMIWIWPGDEPPTA 327 (539)
Q Consensus 256 ~n~CpHRGa~Ls~-G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~-------~~~~~L~~~pv~e~~G~IwV~l~~~~p~~ 327 (539)
.|+|||||++|+. +.++.+.|+||||||+||.+|+|+++|... ....+|+.++|.+.+|+||++++++++ .
T Consensus 78 ~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~-~ 156 (438)
T TIGR03228 78 VNACQHRGATLTRVGKGNQSTFTCPFHAWCYKSDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAAT-D 156 (438)
T ss_pred cccCCCCCCccccCCccccCEEEcCCCCCcccCCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCC-C
Confidence 9999999999996 788888999999999999999999998542 124678889999999999999987642 2
Q ss_pred CCCCCCCC--------------CCceee-eEEEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009233 328 TIPCLLPP--------------SGFEIH-AEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (539)
Q Consensus 328 ~lp~~~~~--------------~~~~~~-~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 374 (539)
++++++++ .++++. ....+.++||||+.+||++|+||++++|.++++
T Consensus 157 ~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 157 SLEDFLGDARVFLDMMVAQSPTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CHHHHhhhHHHHHHHHhhccCcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 35554421 124433 245678999999999999999999999988764
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=2.2e-30 Score=235.45 Aligned_cols=122 Identities=65% Similarity=1.383 Sum_probs=113.3
Q ss_pred cCCCCCccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCe
Q 009233 204 SGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGW 283 (539)
Q Consensus 204 ~~~~~~~~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW 283 (539)
-|+..++...+++.|++|+++++|++|+++.++++|++++|+|+.+|+++|+.|.|||+|++|+.|.+.++.|+||||||
T Consensus 4 ~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hgw 83 (129)
T cd04337 4 LGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHGW 83 (129)
T ss_pred cccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCCC
Confidence 36677889999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred eEcCCCCccccCCcccccccccccceEEecCeEEEcCCCCCC
Q 009233 284 EYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 284 ~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
+||.+|+|+.+|..+....+|++||+++++|+||||+++++|
T Consensus 84 ~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 84 EYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred EECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 999999999999765445689999999999999999987654
No 8
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=1.4e-29 Score=234.34 Aligned_cols=132 Identities=33% Similarity=0.714 Sum_probs=117.8
Q ss_pred ccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeecc
Q 009233 201 LNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCP 279 (539)
Q Consensus 201 ~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CP 279 (539)
+...||.+|+...+++.|++|+.+++|+ +|+++.+.++|++++|+|+.+|+++||.|+|||||++|+.|.+.++.|+||
T Consensus 5 ~~~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP 84 (144)
T cd03479 5 LTRVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCC 84 (144)
T ss_pred eeecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEcc
Confidence 3456888999999999999999999999 699999999999999999989999999999999999999999989999999
Q ss_pred CCCeeEcCCCCccccCCccc-----ccccccccceEEecCeEEEcCCCCCCCCCCCCC
Q 009233 280 YHGWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332 (539)
Q Consensus 280 yHGW~Fd~~G~c~~~P~~~~-----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~ 332 (539)
||||+||.+|+|+.+|+.+. ...+|++|||++++|+|||++++..+++.+|++
T Consensus 85 ~Hgw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 85 YHGWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CCCcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 99999999999999997542 246799999999999999999864444445544
No 9
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.96 E-value=2.1e-29 Score=227.17 Aligned_cols=109 Identities=33% Similarity=0.739 Sum_probs=100.0
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccC
Q 009233 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 216 ~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
..||+|+.++||+ ++++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 5799999999996 678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred Cccc---------ccccccccceEEecCeEEEcCCCCCC
Q 009233 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
+.+. ...++++|||+|++|+||||++++.|
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 7432 23689999999999999999987654
No 10
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=3.7e-29 Score=228.89 Aligned_cols=115 Identities=30% Similarity=0.839 Sum_probs=105.2
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009233 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (539)
Q Consensus 211 ~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~ 290 (539)
...+++.|++|+.++||++|..+.++++|++|+|+|+.+|+++||+|+|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 35679999999999999988889999999999999988999999999999999999999999999999999999999999
Q ss_pred ccccCCccc-----ccccccccceEEecCeEEEcCCCCCC
Q 009233 291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 291 c~~~P~~~~-----~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
|+.+|.... ...+|++|||++++|+|||++++.+|
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~ 130 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATP 130 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCC
Confidence 999987531 23669999999999999999987654
No 11
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.95 E-value=4e-28 Score=216.41 Aligned_cols=109 Identities=25% Similarity=0.638 Sum_probs=101.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~ 296 (539)
.|++|+.++||++|+++.++++|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 49999999999999999999999999999998999999999999999999999999999999999999999999999987
Q ss_pred ccc--ccccccccceEEecCeEEEcCCCCCC
Q 009233 297 TQL--RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 297 ~~~--~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
.+. ...++++||+++++|+|||+++++..
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 542 24678999999999999999987643
No 12
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=5.4e-28 Score=222.26 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.5
Q ss_pred cccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcC-CCcEEEeeccCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCC
Q 009233 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 290 (539)
Q Consensus 213 ~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~-dG~v~A~~n~CpHRGa~Ls~G~v~-~~~l~CPyHGW~Fd~~G~ 290 (539)
.+++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++||.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 468999999999999999999999999999999986 999999999999999999999875 569999999999999999
Q ss_pred ccccCCccc-------ccccccccceEEecCeEEEcCCCCCC
Q 009233 291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 291 c~~~P~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
|+.+|.... ...+|++|||++++|+|||++++.++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997531 23679999999999999999987654
No 13
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=9.9e-28 Score=213.96 Aligned_cols=110 Identities=35% Similarity=0.819 Sum_probs=101.9
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccc
Q 009233 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293 (539)
Q Consensus 214 ~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~ 293 (539)
+++.|+++|.++||+ |+++.+.+.|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 578999999999998 8899999999999999988999999999999999999999999999999999999999999999
Q ss_pred cCCcc--cccccccccceEEecCeEEEcCCCCC
Q 009233 294 MPSTQ--LRNVKIKSLPCFEQEGMIWIWPGDEP 324 (539)
Q Consensus 294 ~P~~~--~~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (539)
+|... ....+|++|||++++|+|||++++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~~ 113 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDAA 113 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCcc
Confidence 99754 23468999999999999999998653
No 14
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=1.5e-27 Score=222.17 Aligned_cols=130 Identities=21% Similarity=0.346 Sum_probs=114.4
Q ss_pred cCCCCCCchhhHHhhccCCCCcccccCCCCCcccccc-CceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEee
Q 009233 179 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLK-NFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQ 256 (539)
Q Consensus 179 ~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~ 256 (539)
++...+|++.++.|+++++ + +.|++||++++|+ +|+++.+.+.|++|+|+|+.+|+++|+.
T Consensus 3 ~~~~y~d~~~~~~E~~~if-----------------~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~ 65 (150)
T cd03545 3 PYKVFTDRAYFDREQERIF-----------------RGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWV 65 (150)
T ss_pred ChhhccCHHHHHHHHHhhh-----------------CCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEc
Confidence 4567788899999988864 5 7899999999998 5999999999999999998899999999
Q ss_pred ccCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCccc-------------ccccccccceEEecCeEEEcCCC
Q 009233 257 NTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQL-------------RNVKIKSLPCFEQEGMIWIWPGD 322 (539)
Q Consensus 257 n~CpHRGa~Ls~G~-v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~-------------~~~~L~~~pv~e~~G~IwV~l~~ 322 (539)
|+|||||++|+.|. ++++.|+||||||+||++|+|+.+|..+. ...+|++|+|.+++|+|||++++
T Consensus 66 n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 66 NRCAHRGALVCRERRGNDGSLTCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ccCcCCCCEecccccCCCCEEECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 99999999999884 45789999999999999999999996421 24689999999999999999987
Q ss_pred CCC
Q 009233 323 EPP 325 (539)
Q Consensus 323 ~~p 325 (539)
+++
T Consensus 146 ~~~ 148 (150)
T cd03545 146 EVE 148 (150)
T ss_pred CCC
Confidence 654
No 15
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.94 E-value=5.5e-27 Score=215.00 Aligned_cols=112 Identities=31% Similarity=0.628 Sum_probs=100.0
Q ss_pred ccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCc--ccCCeeeccCCCeeEcC-C
Q 009233 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D 288 (539)
Q Consensus 212 ~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~--v~~~~l~CPyHGW~Fd~-~ 288 (539)
..+++.|++||.++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +
T Consensus 9 ~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~t 87 (136)
T cd03548 9 WGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDD 87 (136)
T ss_pred cCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCC
Confidence 36789999999999999999999999999999999 69999999999999999999985 56789999999999996 8
Q ss_pred CCccccCCccc----ccccccccceEEecCeEEEcCCCCC
Q 009233 289 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP 324 (539)
Q Consensus 289 G~c~~~P~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (539)
|+|+.+|..+. ...+|++|||++++|+|||++++..
T Consensus 88 G~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~~ 127 (136)
T cd03548 88 GKLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDGD 127 (136)
T ss_pred ccEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCcc
Confidence 99998765432 1367999999999999999997643
No 16
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=1.3e-26 Score=207.70 Aligned_cols=108 Identities=25% Similarity=0.410 Sum_probs=99.6
Q ss_pred ceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccC
Q 009233 217 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 217 ~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
.|++||+++||+ +|+++++++.|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 499999999998 4889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc------ccccccccceEEecCeEEEcCCCCC
Q 009233 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (539)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (539)
.... ...+|.+++|.+++|+|||+++++.
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~~ 115 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRSL 115 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCCc
Confidence 8542 3478999999999999999997643
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=1.2e-26 Score=211.10 Aligned_cols=108 Identities=22% Similarity=0.406 Sum_probs=97.2
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009233 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 218 W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
|++||+++||+ +|++.++.+++.+|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 5899999999999999999999999999999999999998864 456899999999999999999999
Q ss_pred Cccc-----------------ccccccccceEEecCeEEEcCCCCCC
Q 009233 296 STQL-----------------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 296 ~~~~-----------------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
..+. ...+|++++|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 7421 24679999999999999999987654
No 18
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.93 E-value=3.3e-26 Score=203.54 Aligned_cols=107 Identities=33% Similarity=0.669 Sum_probs=99.3
Q ss_pred eEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009233 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 218 W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
|++||.++||+ +|+.+.+++.|++++|+|+.+|+++|+.|+|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 9999999999999999998899999999999999999999998 889999999999999999999999
Q ss_pred Cccc------ccccccccceEEecCeEEEcCCCCC
Q 009233 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (539)
Q Consensus 296 ~~~~------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (539)
+... ...+|++|||++++|+|||++++..
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~ 115 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDA 115 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCC
Confidence 8542 2467999999999999999997754
No 19
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.93 E-value=3.9e-26 Score=207.38 Aligned_cols=114 Identities=23% Similarity=0.405 Sum_probs=100.3
Q ss_pred ccccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCC
Q 009233 212 TRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDG 289 (539)
Q Consensus 212 ~~~~~~W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G 289 (539)
..+.+.|+.||+++||++ |.+..++++|++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+|
T Consensus 3 ~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~G 82 (128)
T cd03472 3 RVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTAG 82 (128)
T ss_pred chhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCCc
Confidence 357889999999999985 777888899999999999999999999999999999999874 446899999999999999
Q ss_pred CccccCCccc--------ccccccccceEEecCeEEEcCCCCCC
Q 009233 290 KCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 290 ~c~~~P~~~~--------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
+|+.+|..+. ....|+.++|.++.|+|||++++++|
T Consensus 83 ~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 83 NLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred CEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 9999998532 12468999999999999999987654
No 20
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.93 E-value=1.3e-25 Score=208.28 Aligned_cols=126 Identities=20% Similarity=0.394 Sum_probs=107.7
Q ss_pred CCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEeeccCCC
Q 009233 183 STSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH 261 (539)
Q Consensus 183 a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpH 261 (539)
-+|++.++.+++++ +.+.|++|+++++|+ +|+++.+++.|++|+|+|+.+|+++|+.|+|||
T Consensus 5 y~~~~~~~~e~~~i-----------------~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpH 67 (146)
T cd03538 5 YTDPEIFALEMERL-----------------FGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPH 67 (146)
T ss_pred EcCHHHHHHHHHHH-----------------hhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcC
Confidence 46677777777664 477899999999998 699999999999999999989999999999999
Q ss_pred CCCCCCCC-ccc-CCeeeccCCCeeEcCCCCccccCCccc----------cccccccc-ceEEecCeEEEcCCCCCC
Q 009233 262 RACPLHLG-SVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 262 RGa~Ls~G-~v~-~~~l~CPyHGW~Fd~~G~c~~~P~~~~----------~~~~L~~~-pv~e~~G~IwV~l~~~~p 325 (539)
||++|+.+ .+. ++.|+||||||+||.||+|+.+|..+. ...+|+++ .|.+++|+|||++++++|
T Consensus 68 rg~~L~~~~~g~~~~~i~CP~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 68 KGTKIVSDGCGNTGKFFRCPYHAWSFKTDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCEeecccccccCCEEECCCCCCEECCCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 99999754 344 568999999999999999999997541 24689999 688899999999987643
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.92 E-value=2.1e-25 Score=201.14 Aligned_cols=110 Identities=21% Similarity=0.513 Sum_probs=96.3
Q ss_pred CceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccC-CeeeccCCCeeEcCCCCccc
Q 009233 216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 293 (539)
Q Consensus 216 ~~W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~-~~l~CPyHGW~Fd~~G~c~~ 293 (539)
+.|+.+|+++||++ |++..+.+++++++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.||+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 46999999999986 78888889999999999889999999999999999999987664 68999999999999999999
Q ss_pred cCCccc--------ccccccccceEE-ecCeEEEcCCCCCC
Q 009233 294 MPSTQL--------RNVKIKSLPCFE-QEGMIWIWPGDEPP 325 (539)
Q Consensus 294 ~P~~~~--------~~~~L~~~pv~e-~~G~IwV~l~~~~p 325 (539)
+|.... ...+|++||+.+ ++|+|||++++++|
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997432 236799999655 79999999987643
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.92 E-value=4.4e-25 Score=199.03 Aligned_cols=108 Identities=19% Similarity=0.358 Sum_probs=95.9
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCCccccC
Q 009233 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 218 W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~-~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
|+.+|+++||++ |++..+.+.|.+++|+|+.+|+++||.|+|||||++|+.|... ...|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 899999999986 7788889999999999988999999999999999999987654 35799999999999999999999
Q ss_pred Cccc---------ccccccccceEEecCeEEEcCCCCCC
Q 009233 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 296 ~~~~---------~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
..+. ...+|++|+|.+++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 119 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGP 119 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCC
Confidence 7431 23679999999999999999987643
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=2.6e-24 Score=185.34 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.9
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~ 296 (539)
|++++.++||++|+++.+++.|++++|+|. +|+++||.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+.+|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999999999999999999999997 669999999999999999999888899999999999997 999999887
Q ss_pred cccccccccccceEEecCeEEE
Q 009233 297 TQLRNVKIKSLPCFEQEGMIWI 318 (539)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV 318 (539)
. ..|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 3 57999999999999998
No 24
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=3.2e-24 Score=185.25 Aligned_cols=97 Identities=21% Similarity=0.463 Sum_probs=89.7
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~ 296 (539)
|+.++.++||++|+.+.+.+.|++++|+|+.+|+++||.|+|||+|++|+.|.+.++.|+||||||+||+ +|.|.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999999999999999999988899999999999999999999999999999999999996 888764 43
Q ss_pred cccccccccccceEEecCeEEEc
Q 009233 297 TQLRNVKIKSLPCFEQEGMIWIW 319 (539)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV~ 319 (539)
..+|++||+++++|.|||.
T Consensus 80 ----~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 ----EGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred ----CCccceEeEEEECCEEEEC
Confidence 2579999999999999984
No 25
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.91 E-value=4.8e-24 Score=187.43 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.9
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~ 296 (539)
|+.+|.++||++|+++.+++.|.+++++|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|.|.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8999999999999999999999999999989999999999999999999999988889999999999996 677664 32
Q ss_pred cccccccccccceEEecCeEEEcCCCCCC
Q 009233 297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 297 ~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
..+|++|||++++|.|||++.+.+|
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 3689999999999999999975443
No 26
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.90 E-value=6.2e-24 Score=191.71 Aligned_cols=108 Identities=24% Similarity=0.463 Sum_probs=93.7
Q ss_pred eEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccC
Q 009233 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (539)
Q Consensus 218 W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P 295 (539)
|+.||+.+||++ |+++.+++.|++++|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999986 788999999999999999899999999999999999998854 456999999999999999999998
Q ss_pred Cccc----------ccccccccce-EEecCeEEEcCCCCCC
Q 009233 296 STQL----------RNVKIKSLPC-FEQEGMIWIWPGDEPP 325 (539)
Q Consensus 296 ~~~~----------~~~~L~~~pv-~e~~G~IwV~l~~~~p 325 (539)
.... ...+|..+++ ..++|+||+++++++|
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~ 121 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVA 121 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCC
Confidence 6321 1357888864 5568999999987654
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.90 E-value=2.2e-23 Score=181.60 Aligned_cols=100 Identities=21% Similarity=0.385 Sum_probs=93.2
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P 295 (539)
.|+.+|..+||++|....+.+.|.+++|+|..+|+++|++|+|||+|++|+.|.+.++.|.||+|||+||+ ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 49999999999999999999999999999977899999999999999999999999999999999999995 99999988
Q ss_pred CcccccccccccceEEecCeEEEcC
Q 009233 296 STQLRNVKIKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~IwV~l 320 (539)
.. ..|++||+++++|.|||.+
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred cc----CCcceEeEEEECCEEEEeC
Confidence 63 4799999999999999853
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.89 E-value=3.1e-23 Score=181.12 Aligned_cols=97 Identities=24% Similarity=0.309 Sum_probs=88.4
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCC-CCCCccc----CCeeeccCCCeeEc-CCCCc
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 291 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~-Ls~G~v~----~~~l~CPyHGW~Fd-~~G~c 291 (539)
|++||.++||++|+.+.+.+.|++|+|+|..+|+++|+.|+|||+|++ |+.|.+. ++.|+||||||+|| .||+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 899999999999999999999999999998777999999999999997 7888753 34899999999999 59999
Q ss_pred cccCCcccccccccccceEEecCeEEEc
Q 009233 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (539)
Q Consensus 292 ~~~P~~~~~~~~L~~~pv~e~~G~IwV~ 319 (539)
+..|. .+|++|||++++|.|||.
T Consensus 81 ~~~p~-----~~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDED-----VSVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCC-----ccEeeEeEEEECCEEEEC
Confidence 99875 579999999999999983
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.89 E-value=3.6e-23 Score=181.08 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=90.8
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCC-CCCCCCCcccCCe----eeccCCCeeEcC-CCC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 290 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHR-Ga~Ls~G~v~~~~----l~CPyHGW~Fd~-~G~ 290 (539)
.|++|+.++||++|..+.+.+.|++++|+|..+|+++|+.|+|||+ +.+|+.|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 5999999999999999999999999999998789999999999999 8999999876665 999999999995 999
Q ss_pred ccccCCcccccccccccceEEecCeEEEcC
Q 009233 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 291 c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l 320 (539)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998764 5799999999999999954
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.88 E-value=1.2e-22 Score=178.45 Aligned_cols=101 Identities=19% Similarity=0.343 Sum_probs=91.5
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccC-CeeeccCCCeeEcC-CCCcccc
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM 294 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~-~~l~CPyHGW~Fd~-~G~c~~~ 294 (539)
.|+.+|.++||++|..+.+.+. .+++|+|. +|+++|++|+|||+|++|+.|.+++ +.|+||+|||+||. ||+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~-~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV-GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE-CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 3899999999999999888877 88999995 9999999999999999999999888 79999999999996 9999987
Q ss_pred CCcccccccccccceEEecCeEEEcCCCC
Q 009233 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
|. ..+|++||+++++|.|||.+..+
T Consensus 80 p~----~~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PA----TDPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CC----CCCcceEeEEEECCEEEEEccCC
Confidence 75 35799999999999999988643
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=1.1e-22 Score=174.84 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=87.2
Q ss_pred EeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCCcc
Q 009233 220 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 298 (539)
Q Consensus 220 ~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~~~ 298 (539)
.||.++||++|+++.+.+.|.+|+|+|. +|+++|++|+|||+|++|+.|.+.++.|+||||||+||. +|+|+.+|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 3789999999999999999999999997 899999999999999999999999999999999999996 9999999873
Q ss_pred cccccccccceEEecCeEE
Q 009233 299 LRNVKIKSLPCFEQEGMIW 317 (539)
Q Consensus 299 ~~~~~L~~~pv~e~~G~Iw 317 (539)
..|++||+++++|.||
T Consensus 80 ---~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ---DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ---CCcceEEEEEECCEEC
Confidence 4699999999999997
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.85 E-value=3.6e-21 Score=168.80 Aligned_cols=98 Identities=28% Similarity=0.612 Sum_probs=91.7
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCC-CCCCCCCCcccCC----eeeccCCCeeEcC-CCC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 290 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpH-RGa~Ls~G~v~~~----~l~CPyHGW~Fd~-~G~ 290 (539)
+|+.||.++||++|..+.+.+.|++|+|||..+|++||++|+||| ++.+|+.|.+.+. .|.||+|+|.||+ ||+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999879999999999999 8999999998776 9999999999996 999
Q ss_pred ccccCCcccccccccccceEEecCeEEEc
Q 009233 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (539)
Q Consensus 291 c~~~P~~~~~~~~L~~~pv~e~~G~IwV~ 319 (539)
|+..|. .++++|||++++|.|||.
T Consensus 81 ~~~~~~-----~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPD-----VSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECS-----EBSBEEEEEECTTEEEEE
T ss_pred cCCCCC-----CcEEeEEEEEECCEEEEC
Confidence 998665 689999999999999983
No 33
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.84 E-value=4.4e-21 Score=164.82 Aligned_cols=93 Identities=31% Similarity=0.648 Sum_probs=79.6
Q ss_pred ceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCc--ccCCeeeccCCCeeEcCC-CCcc
Q 009233 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 292 (539)
Q Consensus 217 ~W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~--v~~~~l~CPyHGW~Fd~~-G~c~ 292 (539)
.|++||.++||++ |+...+.+ +...++++..+|+++|+.|+|||+|++|+.|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999998 88889999 44445555689999999999999999999994 456899999999999975 9999
Q ss_pred ccCCcccccccccccceEEecC
Q 009233 293 KMPSTQLRNVKIKSLPCFEQEG 314 (539)
Q Consensus 293 ~~P~~~~~~~~L~~~pv~e~~G 314 (539)
.+|+. ..++.||++++++
T Consensus 80 ~~p~~----~~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAP----RPLPLYPVKVEGD 97 (97)
T ss_dssp ESTTC----SBSTEEEEEEETT
T ss_pred cCCCC----CCcCCCCeEEeCC
Confidence 99984 3799999998764
No 34
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.84 E-value=8.9e-21 Score=167.41 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=88.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEc-CCCcEEEeeccCCCCCCC-CCCCcccC---C-eeeccCCCeeEcC-CC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYST-DG 289 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~-~dG~v~A~~n~CpHRGa~-Ls~G~v~~---~-~l~CPyHGW~Fd~-~G 289 (539)
.|..||..+||++|+.+.+.+.|++|+|+|. .+|+++|++|+|||.+++ |+.|.+.+ + .|+||+|||+||+ ||
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999995 589999999999999985 99998742 2 4999999999995 99
Q ss_pred CccccCCcccccccccccceEEecCeEEEc
Q 009233 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (539)
Q Consensus 290 ~c~~~P~~~~~~~~L~~~pv~e~~G~IwV~ 319 (539)
+|+..|. ..|++|||++++|.|||.
T Consensus 83 ~~~~~~~-----~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQ-----FSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCC-----ccEeeEeEEEECCEEEEe
Confidence 9998664 479999999999999984
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.83 E-value=2.1e-20 Score=161.20 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=88.1
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCC
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~ 296 (539)
|++++..++|++|+...+.+.|.+++|+|..+|+++|++|.|||+|++|..|.+.++.|+||+|||+||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999999999999999999999988899999999999999999999888999999999999997 999999886
Q ss_pred cccccccccccceEEec-CeE
Q 009233 297 TQLRNVKIKSLPCFEQE-GMI 316 (539)
Q Consensus 297 ~~~~~~~L~~~pv~e~~-G~I 316 (539)
...|++||+++.+ +.|
T Consensus 81 ----~~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 ----PRPLPKYPVKVEGDGVV 97 (98)
T ss_pred ----CCCcCEEEEEEeCCceE
Confidence 3689999999984 444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.82 E-value=3.5e-20 Score=163.11 Aligned_cols=101 Identities=23% Similarity=0.432 Sum_probs=90.0
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCC-eeeccCCCeeEcC-CCCccc
Q 009233 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK 293 (539)
Q Consensus 216 ~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~-~l~CPyHGW~Fd~-~G~c~~ 293 (539)
..|+.+|..+||+++..+.+.+.+..+++++..+|+++|+.|+|||.+++|+.|.+.++ .|+||+|+|.||. ||+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 47999999999999989999884436677777899999999999999999999999886 5999999999995 999999
Q ss_pred cCCcccccccccccceEEecCeEEEcC
Q 009233 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 294 ~P~~~~~~~~L~~~pv~e~~G~IwV~l 320 (539)
.|+.. .|++||+++.+|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99743 299999999999999976
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.81 E-value=8.5e-20 Score=156.41 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=79.6
Q ss_pred eeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccc
Q 009233 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (539)
Q Consensus 221 va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~ 300 (539)
+|.++||++|+.+.+.+.|++|+|+|+.+|+++|+.|+|||+|++|+.|.. ++.|.||||||+||.||+|+..|+.
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 577899999999999999999999999899999999999999999998865 5799999999999999999999873
Q ss_pred cccccccceEEec
Q 009233 301 NVKIKSLPCFEQE 313 (539)
Q Consensus 301 ~~~L~~~pv~e~~ 313 (539)
..|++||+...+
T Consensus 78 -~~l~~y~v~~~~ 89 (91)
T cd03477 78 -SGLKPADDAPID 89 (91)
T ss_pred -CCCCeeEeeccc
Confidence 578999987543
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.75 E-value=3.1e-18 Score=155.18 Aligned_cols=95 Identities=20% Similarity=0.319 Sum_probs=85.6
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEcC---------CCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-
Q 009233 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 287 (539)
Q Consensus 220 ~va~~~dL~~g~~~~~~l~g--~~vvl~R~~---------dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~- 287 (539)
.+|.+++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||.|++|+.|. +++.|.||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 68999999999999999887 899999974 7999999999999999999987 7789999999999996
Q ss_pred -CCCccccCCcccccccccccceEEe--cCeEEEc
Q 009233 288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (539)
Q Consensus 288 -~G~c~~~P~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (539)
+|+|+..|. ...|++||++++ +|.|||.
T Consensus 84 tgG~~~~gPa----~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQA----TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCC----CCCCCeEEEEEECCCCEEEEE
Confidence 479998776 368999999999 9999984
No 39
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.75 E-value=1.8e-17 Score=156.81 Aligned_cols=171 Identities=20% Similarity=0.192 Sum_probs=110.9
Q ss_pred EEEeecchhhHhhhcCCCCCCCCcCccccccCCCC---CceeeeecCCCCC-----------C--ccc--cCCCceeEEc
Q 009233 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV---PSLVKFLTPASGL-----------Q--GYW--DPYPIDMEFR 406 (539)
Q Consensus 345 ~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v---p~~v~~~~p~~~~-----------~--g~~--~~~~~~~~f~ 406 (539)
.++++|||++++||++|++|++|||.++++..... +...++.....+. . ++- ........|.
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVPRGVTYRRWREDEDPPPFGFEGPVDRWRVIEFL 84 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeCCEEEEEEEecCCCCCCCCCCCCccEEEEEEEE
Confidence 46789999999999999999999999999864321 1111111000000 0 000 0001235688
Q ss_pred CceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhc--cCchhHHHHHHHHHHHHHhhh
Q 009233 407 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL--KHVPFMQYLWRHFAEQVLNED 484 (539)
Q Consensus 407 ~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~--~~~p~~~~~~~~~~~~V~~ED 484 (539)
.|+++........++. ......+..++.++|+++++|++++.+.+++.... ...+.+...+..+...|+.||
T Consensus 85 ~P~~~~~~~~~~~~~~------~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~eD 158 (196)
T cd08878 85 LPNVLLIDPGVAPAGT------REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDEEKKDDEELTETLRSGLSGAFNED 158 (196)
T ss_pred CCEEEEEecccccCCc------CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCccccCCHHHHHHHHHHhhhhchhH
Confidence 8987765544333221 11112345677889999999999998887765421 011233444455778999999
Q ss_pred HHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHHH
Q 009233 485 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (539)
Q Consensus 485 ~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~l 522 (539)
+.|+|+||+++.+. ...+.+..+|+++++||||++++
T Consensus 159 ~~i~e~q~~~~~~~-~~~~~l~~~D~~~~~~Rr~l~~~ 195 (196)
T cd08878 159 KEAVEAQQRIIDRD-PTREHLGLSDKGIVRFRRLLRRL 195 (196)
T ss_pred HHHHHHHHHHHhcC-CcccccccccHHHHHHHHHHHHh
Confidence 99999999998764 22356677999999999999875
No 40
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.71 E-value=3.6e-17 Score=147.77 Aligned_cols=90 Identities=18% Similarity=0.352 Sum_probs=73.5
Q ss_pred CCCeEEEE-ECCeeEEEEEcCCCcE--EEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCccccccccc
Q 009233 229 DDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIK 305 (539)
Q Consensus 229 ~g~~~~~~-l~g~~vvl~R~~dG~v--~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~ 305 (539)
+|++..++ ..+.+.++.+..+|++ +|++|+|||+|++|+.+.. ++.|+||+|||+||.+|+++..|. ...|+
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa----~~~L~ 96 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPA----PLSLA 96 (126)
T ss_pred CCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCC----CCCCc
Confidence 57776666 4455554455579977 8999999999999998754 579999999999999999998886 36899
Q ss_pred ccceEEecCeEEEcCCCC
Q 009233 306 SLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 306 ~~pv~e~~G~IwV~l~~~ 323 (539)
.||+++++|.|||.+..+
T Consensus 97 ~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 97 LVHATVDDDKVVLSPWTE 114 (126)
T ss_pred eEeEEEECCEEEEEECcc
Confidence 999999999999975443
No 41
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.66 E-value=2.9e-16 Score=142.82 Aligned_cols=94 Identities=20% Similarity=0.348 Sum_probs=81.9
Q ss_pred EeeecCCCCCCCeEEEEECC--eeEEEEEc---------CCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCC
Q 009233 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (539)
Q Consensus 220 ~va~~~dL~~g~~~~~~l~g--~~vvl~R~---------~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~ 288 (539)
.+|.++||++|+++.+.+.+ .+++++|. .+|+++|++|.|||.|++|+.+. .++.|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 68999999999999999865 47888883 58999999999999999999875 67899999999999964
Q ss_pred --CCccccCCcccccccccccceEEe-cCeEEE
Q 009233 289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (539)
Q Consensus 289 --G~c~~~P~~~~~~~~L~~~pv~e~-~G~IwV 318 (539)
|+|+..|. ...|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~----~~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQA----TQNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCC----CCCCCeeEEEEECCCeEEE
Confidence 69998775 358999999997 589994
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.63 E-value=5.2e-16 Score=135.72 Aligned_cols=72 Identities=15% Similarity=0.335 Sum_probs=65.9
Q ss_pred cCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEeeccCCCCCCCCCCC--cccCCeeeccCCCeeEcC-CCCccccCC
Q 009233 224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (539)
Q Consensus 224 ~~dL~~g~~~~~~l-~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G--~v~~~~l~CPyHGW~Fd~-~G~c~~~P~ 296 (539)
..+|++|..+.+.+ .|.+|+|+|. +|+++|+.|+|||+|++|+.| .++++.|+||+|||+||+ ||+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~-~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS-KSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE-CCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 47899999999999 9999999995 899999999999999999994 588899999999999995 999998665
No 43
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.63 E-value=1.3e-15 Score=138.07 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=81.9
Q ss_pred ecCCCCCCCeEEEEECCeeEEEEEcC----------------------------CCcEEEeeccCCCCCCCCCCCcccCC
Q 009233 223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (539)
Q Consensus 223 ~~~dL~~g~~~~~~l~g~~vvl~R~~----------------------------dG~v~A~~n~CpHRGa~Ls~G~v~~~ 274 (539)
.+++|++|+.+.+...|++|+|+|.. +|+++|+.+.|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 46789999999999999999999952 67999999999999999988776788
Q ss_pred eeeccCCCeeEcCCCCccccCCcccccccccccceEEec-CeEEE
Q 009233 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 318 (539)
Q Consensus 275 ~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~~-G~IwV 318 (539)
.|.||||||+||.+|+.+..|. +..|+.||++..+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa----~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPA----PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCC----CCCCCeeeEEEecCCEEEe
Confidence 9999999999999999998876 4689999999876 67765
No 44
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.59 E-value=2.6e-14 Score=134.25 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=98.2
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccccCC-----CCCceeeeecC----CCCCCcccc-------------CCCc
Q 009233 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGW-----SVPSLVKFLTP----ASGLQGYWD-------------PYPI 401 (539)
Q Consensus 344 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~-----~vp~~v~~~~p----~~~~~g~~~-------------~~~~ 401 (539)
..++++||||+++||++|+||++++|+++++... ..+... ...+ .......|. ....
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYR-VDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGY 81 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceE-EEeccCCCCChhhcccchhhhcccccccccccCe
Confidence 3578999999999999999999999999987421 111111 1110 000000010 0112
Q ss_pred eeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhh-ccCchhHHHHHHHHHHHH
Q 009233 402 DMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASV-LKHVPFMQYLWRHFAEQV 480 (539)
Q Consensus 402 ~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~-~~~~p~~~~~~~~~~~~V 480 (539)
...+..|++++.... ....++.++|+++++|++.++++...... ..........+..+...|
T Consensus 82 ~~~~~fPn~~~~~~~-----------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 144 (188)
T cd00680 82 LYLYLFPNLMIGLYP-----------------DSLQVQQFVPIGPNKTRLEVRLYRPKDEDAREEFDAELESLAGILRQV 144 (188)
T ss_pred EEEEECCcEeeeecC-----------------CEEEEEEEEecCCCcEEEEEEEEEecccccchhhHHHHHHhHHHHHHH
Confidence 345567877654321 13446678999999999999887654321 011111111222356789
Q ss_pred HhhhHHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHHH
Q 009233 481 LNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (539)
Q Consensus 481 ~~ED~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~l 522 (539)
+.||+.++|+||+++.++................|.+|+++.
T Consensus 145 ~~ED~~~~e~~Q~gl~s~~~~~~~l~~~E~~i~~f~~~~~~~ 186 (188)
T cd00680 145 LDEDIELCERIQRGLRSGAFRGGPLSPLEEGIRHFHRWLRRA 186 (188)
T ss_pred HHHHHHHHHHHhccccCCcCCCCCCCcccccHHHHHHHHHHh
Confidence 999999999999999987543333333446888888887654
No 45
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.51 E-value=6.1e-14 Score=134.40 Aligned_cols=89 Identities=19% Similarity=0.362 Sum_probs=74.2
Q ss_pred CCCCCeEEEE-ECCeeEEEEEcCCCcE--EEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCccccccc
Q 009233 227 LKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK 303 (539)
Q Consensus 227 L~~g~~~~~~-l~g~~vvl~R~~dG~v--~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~ 303 (539)
.++|+...+. +.|.+.++++..+|++ +|++++|||.||+|..+..+ +.|.||+|||+||.+|+.+..|. ...
T Consensus 72 ~~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa----~~~ 146 (178)
T PRK13474 72 HPAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPA----PLS 146 (178)
T ss_pred CCCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCC----CCC
Confidence 3677777776 6777744444469999 67799999999999988744 69999999999999999998886 468
Q ss_pred ccccceEEecCeEEEcC
Q 009233 304 IKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 304 L~~~pv~e~~G~IwV~l 320 (539)
|+.|++++++|.|||.+
T Consensus 147 L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 147 LALVHVTVEDDKVLFSP 163 (178)
T ss_pred CCeEeEEEECCEEEEEE
Confidence 99999999999999955
No 46
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.49 E-value=9.5e-13 Score=126.15 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=95.7
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC----------CceeeeecCCC---CCCccccC---------CC
Q 009233 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV----------PSLVKFLTPAS---GLQGYWDP---------YP 400 (539)
Q Consensus 343 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v----------p~~v~~~~p~~---~~~g~~~~---------~~ 400 (539)
...++++||||+++||++|+||++++|++|++.-... +.......+.. ........ ..
T Consensus 3 ~~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (190)
T cd08885 3 REEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRR 82 (190)
T ss_pred eeeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcc
Confidence 3467899999999999999999999999988642100 00111111100 00000000 00
Q ss_pred ceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhc-cCchhHHHHHHHHHHH
Q 009233 401 IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVL-KHVPFMQYLWRHFAEQ 479 (539)
Q Consensus 401 ~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~-~~~p~~~~~~~~~~~~ 479 (539)
....+..|++++... |+ ...++.+.|+++++|++.+.++....... .........+..+...
T Consensus 83 ~~~~~iFPN~~i~~~----~~-------------~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (190)
T cd08885 83 LVLFAIFPTHLLALT----PD-------------YVWWLSLLPEGAGRVRVRWGVLVAPEAADDPEAAEYIAELKALLDA 145 (190)
T ss_pred eEEEEECCcEEEEec----CC-------------eEEEEEEEecCCCeEEEEEEEEEcchhcccchhHHHHHHHHHHHHH
Confidence 123345787765432 11 13355578999999999887664321110 0111122333334578
Q ss_pred HHhhhHHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHH
Q 009233 480 VLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 521 (539)
Q Consensus 480 V~~ED~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~ 521 (539)
|+.||..++|.+|+++.++........+.+.....|.+|+.+
T Consensus 146 v~~ED~~~~e~~Q~Gl~S~~~~~g~l~~~E~~i~~fh~~l~~ 187 (190)
T cd08885 146 INDEDRLVVEGVQRGLGSRFAVPGRLSHLERPIWQFQRYLAS 187 (190)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCCcccccHHHHHHHHHH
Confidence 999999999999999998654332233457788889999765
No 47
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.41 E-value=3e-12 Score=121.64 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=95.9
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCcee-eeecC-------CCC-------CCccccCC-Cc-eeEEc
Q 009233 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLV-KFLTP-------ASG-------LQGYWDPY-PI-DMEFR 406 (539)
Q Consensus 344 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v-~~~~p-------~~~-------~~g~~~~~-~~-~~~f~ 406 (539)
..++++||||+++||++|+||++++|++|++......... ....+ ... ...-|... .. ...+.
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 4678999999999999999999999999986421100000 00000 000 00001100 01 12345
Q ss_pred CceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCc-hhHHHHHHHHH-HHHHhhh
Q 009233 407 PPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFA-EQVLNED 484 (539)
Q Consensus 407 ~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~-p~~~~~~~~~~-~~V~~ED 484 (539)
.|++++... | ....+..+.|.++++|.+.+.++.......... ......+ .+. ..|..||
T Consensus 84 FPN~~i~~~----~-------------~~~~~~~~~P~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ED 145 (185)
T cd08887 84 FPNVSLLVQ----P-------------DHLEIIQIEPGSPDRTRVTVYLLIPPPPDTEEARAYWDKNW-DFLMAVVLDED 145 (185)
T ss_pred CCceEEEec----C-------------CeEEEEEEEcCCCCceEEEEEEEecCCCCcHHHHHHHHHHH-HHHHhhhHHHH
Confidence 677765432 1 123455678999999999887764322111111 1112222 233 6899999
Q ss_pred HHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHHH
Q 009233 485 LRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDAL 522 (539)
Q Consensus 485 ~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~l 522 (539)
..++|.+|+++.++...+............|.+|+++.
T Consensus 146 ~~~~e~~Q~Gl~s~~~~~~~l~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 146 FEVAEEIQRGLASGANDHLTFGRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHhhhhhcCCCCceEeecCCHHHHHHHHHHHHH
Confidence 99999999999987654433345677888999998753
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.40 E-value=5.8e-12 Score=119.77 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=95.0
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCce-e-------eeecCCCC-CCccccCCC--ceeEEcCceeE
Q 009233 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL-V-------KFLTPASG-LQGYWDPYP--IDMEFRPPCMV 411 (539)
Q Consensus 343 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~-v-------~~~~p~~~-~~g~~~~~~--~~~~f~~P~~v 411 (539)
...+++++|||+++||++|+||++++|+++++.... ... . ....+... ....++... ....+..|+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 81 (175)
T cd08883 3 RREYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDY-ATYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNLM 81 (175)
T ss_pred cEEeeeecCceEEehhcCCcccCcccchhHHhhccc-CceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCEe
Confidence 346788999999999999999999999998854110 000 0 00001000 011121111 12345678877
Q ss_pred EEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHHHHHhhhHHHHHHH
Q 009233 412 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVLNEDLRLVLGQ 491 (539)
Q Consensus 412 l~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~~~~V~~ED~~IlE~q 491 (539)
+... |+ ...++.+.|+++++|++.+.++..... ..........+. ...|+.||..|+|.+
T Consensus 82 i~~~----~~-------------~~~~~~~~P~~p~~t~~~~~~~~~~~~-~~~~~~~~~~~~--~~~v~~ED~~i~e~v 141 (175)
T cd08883 82 LNRY----PP-------------GMDVNVVLPLGPERCKVVFDYFVDDSD-GSDEAFIAESIE--SDRVQKEDIEICESV 141 (175)
T ss_pred eeec----CC-------------eEEEEEEEeCCCCcEEEEEEEEEeccc-cchhHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 6532 11 123455789999999998877643221 111112222222 568999999999999
Q ss_pred hhhccCCCCCC-CCcccCChHHHHHHHHHHHH
Q 009233 492 QERMNNGANVW-NLPVGYDKLGVRYRLWRDAL 522 (539)
Q Consensus 492 Q~~l~~g~~~~-el~~~aD~~~v~yRrwl~~l 522 (539)
|++|.++.... .++-........|++|+++.
T Consensus 142 Q~Gl~S~~~~~G~l~~~~E~~v~~Fh~~l~~~ 173 (175)
T cd08883 142 QRGLESGAYDPGRFSPKRENGVHHFHRLLAQA 173 (175)
T ss_pred hhhhcCCCCCCCCCCCccchHHHHHHHHHHHh
Confidence 99999865321 12222366777899997754
No 49
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.38 E-value=2.1e-12 Score=123.37 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=79.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------CCcEEEeeccCCCC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHR 262 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~----------------------------------dG~v~A~~n~CpHR 262 (539)
.|..| ..++|++|+.+.+.+.|.+|+|+|.. +++++|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 35677 68999999999999999999999851 48999999999999
Q ss_pred CCCCCC-Cccc-CCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecCe
Q 009233 263 ACPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGM 315 (539)
Q Consensus 263 Ga~Ls~-G~v~-~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~~G~ 315 (539)
||.+.. +... .+.|.|||||++||.+|+.+..|. +..|+.||++..++.
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa----~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA----PLNLPVPPYKFLSDT 169 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC----CCCCCCCCEEEcCCC
Confidence 987653 4433 568999999999999999998876 468999999886653
No 50
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.36 E-value=1.4e-11 Score=120.27 Aligned_cols=167 Identities=14% Similarity=0.030 Sum_probs=96.9
Q ss_pred CceeeeEEEEEeecchhhHhhhcCCCCCCCCcCcccccc------CCCCC------ce--------ee--eecCCCC---
Q 009233 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK------GWSVP------SL--------VK--FLTPASG--- 391 (539)
Q Consensus 337 ~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~------~~~vp------~~--------v~--~~~p~~~--- 391 (539)
+++......++++||||+++||++|+||++++|+++... ....+ .. .. ..+....
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVA 86 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCccc
Confidence 345555667889999999999999999999999986631 10000 00 00 0000000
Q ss_pred --CCcccc--CCCceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCch
Q 009233 392 --LQGYWD--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP 467 (539)
Q Consensus 392 --~~g~~~--~~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p 467 (539)
+.+... .......+..|++++...+ ....++.+.|+++++|++.+.++........ ..
T Consensus 87 p~~~~~~~~~~~~~~~~~lfPN~~~~~~~-----------------d~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~-~~ 148 (205)
T cd08884 87 PPLPGLTEADDRGALYYTLYPNSFLHLHP-----------------DHVVTFRVLPLSPDETLVRCKWLVHPDAVEG-VD 148 (205)
T ss_pred CCCCCCCccccCceEEEEeCCcEEEEEcC-----------------CEEEEEEEEeCCCCceEEEEEEEECCchhcc-cc
Confidence 000000 0011233456776554321 1234556799999999998877653222111 11
Q ss_pred hHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCCCCCCcccCChHHHHHHHHHHH
Q 009233 468 FMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYDKLGVRYRLWRDA 521 (539)
Q Consensus 468 ~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g~~~~el~~~aD~~~v~yRrwl~~ 521 (539)
+..+....+...|+.||..|+|.+|+++.++............+...|.+|+.+
T Consensus 149 ~~~~~~~~~~~~v~~ED~~i~e~vQ~Gl~S~~~~~g~l~~~E~~v~~F~~~~~~ 202 (205)
T cd08884 149 YDLDDLVEVWDATNRQDWAICERNQRGVNSPAYRPGPYSPMEGGVLAFDRWYLE 202 (205)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCCcCCccHHHHHHHHHHHH
Confidence 111222346678999999999999999998653322222346777788888664
No 51
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.31 E-value=3e-11 Score=115.90 Aligned_cols=160 Identities=15% Similarity=0.024 Sum_probs=92.8
Q ss_pred EEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCceee-------e----ecCCCCCCccccCCCceeEEcCceeE
Q 009233 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVK-------F----LTPASGLQGYWDPYPIDMEFRPPCMV 411 (539)
Q Consensus 343 ~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~v~-------~----~~p~~~~~g~~~~~~~~~~f~~P~~v 411 (539)
...++++||||+++||++|+||++++|+++++....-..... . ..+................+..|+++
T Consensus 3 ~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~~ 82 (182)
T cd08886 3 RLTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDMDTYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPNTM 82 (182)
T ss_pred eEEEEeecccEEEEecCCccccCcccChhHHhcccccccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCCEE
Confidence 346789999999999999999999999998854110000000 0 00000000000001112345678877
Q ss_pred EEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHHHHH-hhhHHHHHH
Q 009233 412 LSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLG 490 (539)
Q Consensus 412 l~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~~~~V~-~ED~~IlE~ 490 (539)
++.. |+ .....++.+.|+++++|++.+.++..- ....... ... ..+...|+ .||..++|.
T Consensus 83 i~~~----~~-----------~~~~~~~~~~P~~p~~t~~~~~~~~~~--~~~~~~~-~~~-~~~~~~v~~~ED~~l~e~ 143 (182)
T cd08886 83 LNVY----PG-----------AGNMGVINIIPVDAETTLQHYDFYFRD--EELTDEE-KEL-IEYYRQVLQPEDLELVES 143 (182)
T ss_pred EEee----CC-----------CCeEEEEEEEeCCCCeEEEEEEEEecC--CCccHHH-HHH-HHHHHHhcchhhHHHHHH
Confidence 6542 11 012345567999999999887765321 1111111 122 23556787 999999999
Q ss_pred HhhhccCCCCCCC-Cc------ccCChHHHHHHHHHHH
Q 009233 491 QQERMNNGANVWN-LP------VGYDKLGVRYRLWRDA 521 (539)
Q Consensus 491 qQ~~l~~g~~~~e-l~------~~aD~~~v~yRrwl~~ 521 (539)
+|+++.++.-... +. .....+...|.+|+++
T Consensus 144 vQ~Gl~S~~~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 144 VQRGLKSRAFGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HhcccccCCCCCceeccCcccCCccchhHHHHHHHHhc
Confidence 9999998653221 21 1346777788888763
No 52
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.22 E-value=2.1e-11 Score=115.80 Aligned_cols=159 Identities=16% Similarity=0.147 Sum_probs=94.5
Q ss_pred EEEeecchhhHhhhcCCCCCCCCcCccccccCCCCCce------eeeecCCCCCC-------------ccc---------
Q 009233 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSL------VKFLTPASGLQ-------------GYW--------- 396 (539)
Q Consensus 345 ~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~vp~~------v~~~~p~~~~~-------------g~~--------- 396 (539)
.++++||||+++||++|+||++++|+++++........ .....+..... ..+
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 45689999999999999999999999986532111111 11111111000 000
Q ss_pred ---c--CCCceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchhHHH
Q 009233 397 ---D--PYPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQY 471 (539)
Q Consensus 397 ---~--~~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~ 471 (539)
+ .......+.+|++++... ++. ..++.+.|+++++|++.+..+..... ...+.+.+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~----~~~-------------~~~~~~~P~~p~~t~~~~~~~~~~~~--~~~~~~~~ 151 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY----PDH-------------FTVRTIIPIGPDRTEVWSWWFVPKDE--GAPPEFRE 151 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE-----TTT-------------TEEEEEEEESTTEEEEEEEEEEETT----STHHHHH
T ss_pred cccccccccccceeeCCCEEEEec----ccc-------------cEEEEEEECCCCeEEEEEEEEEeCCc--ccchhhHH
Confidence 0 001224566888776532 111 12556789999999999877654321 12222233
Q ss_pred HHHHHHHH---HHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHH
Q 009233 472 LWRHFAEQ---VLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDAL 522 (539)
Q Consensus 472 ~~~~~~~~---V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l 522 (539)
.+...... |+.||..++|++|+++.++.. ...+....+..+..|++|++++
T Consensus 152 ~~~~~~~~~~~~~~ED~~~~e~~Q~gl~s~~~~~~~~~~~~E~~v~~f~~~~~~~ 206 (209)
T PF00848_consen 152 ARIRNWDRFFGVFAEDIEIVERQQRGLRSRGFDPGRLSGTSERGVRHFHRWWRRY 206 (209)
T ss_dssp HHHHHHHHHHSTHHHHHHHHHHHHHHTTSSTSCTSEESSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 33222333 899999999999999988543 2223457888999999886653
No 53
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.08 E-value=5.7e-10 Score=105.71 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=54.0
Q ss_pred CCCcEEEeeccCCCCCCCCCC---------------CcccCCeeeccCCCeeEcC-CC-CccccCCcccccccccccceE
Q 009233 248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF 310 (539)
Q Consensus 248 ~dG~v~A~~n~CpHRGa~Ls~---------------G~v~~~~l~CPyHGW~Fd~-~G-~c~~~P~~~~~~~~L~~~pv~ 310 (539)
.+|+++|+++.|||+||+|.. |...++.|.||+|||+||. +| ..+..|+ ...|..|+++
T Consensus 73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA----~~pLp~~~L~ 148 (171)
T cd03475 73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPA----PRPLPAVILE 148 (171)
T ss_pred CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCC----CCCcCEeEEE
Confidence 479999999999999998753 4556789999999999996 56 4554565 3579999998
Q ss_pred Eec--CeEEE
Q 009233 311 EQE--GMIWI 318 (539)
Q Consensus 311 e~~--G~IwV 318 (539)
+.+ |.||+
T Consensus 149 ~d~~~d~iyA 158 (171)
T cd03475 149 YDSSTDDLYA 158 (171)
T ss_pred EeCCCCcEEE
Confidence 874 78887
No 54
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=98.82 E-value=1.3e-08 Score=87.32 Aligned_cols=88 Identities=36% Similarity=0.769 Sum_probs=65.2
Q ss_pred EcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccc-hhhccCchhHHHHHHHH-HHHHHh
Q 009233 405 FRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDF-ASVLKHVPFMQYLWRHF-AEQVLN 482 (539)
Q Consensus 405 f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f-~~~~~~~p~~~~~~~~~-~~~V~~ 482 (539)
|.+||++.+.... .....++.++.++++|+|+++++||+++++.++| ..+.+.+| .++.+. .+.|++
T Consensus 1 F~pPc~v~~~~~~--------~~~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~~~~~k~~P---~wl~H~~~n~VLd 69 (92)
T PF08417_consen 1 FIPPCLVRSTEEG--------PKKKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFPAWIFKLIP---RWLSHLTSNKVLD 69 (92)
T ss_pred CCCCEEEEEeccc--------cccCCCCCEEEEEEEEEECCCCeEEEEEEehhhhhhHHhhcCC---HHHHHHhhCcccH
Confidence 6789999776111 1112234567889999999999999999999998 33445566 344444 489999
Q ss_pred hhHHHHHHHhhhccC-CCCCCC
Q 009233 483 EDLRLVLGQQERMNN-GANVWN 503 (539)
Q Consensus 483 ED~~IlE~qQ~~l~~-g~~~~e 503 (539)
||..+|..||+.+.. |.+.|.
T Consensus 70 ~Dl~lLh~Qe~~l~~~g~~~W~ 91 (92)
T PF08417_consen 70 QDLYLLHGQERRLAREGADNWQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHhccCcCC
Confidence 999999999999987 776663
No 55
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.77 E-value=6e-08 Score=96.22 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=28.7
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCc--ccccc
Q 009233 344 IVMELPIEHGLLLDNLLDLAHAPFTHT--STFAK 375 (539)
Q Consensus 344 ~~~~~~~nwk~~vEN~lD~~H~~~vH~--~t~~~ 375 (539)
.++.+++|||+.+||+.|+||++.+|+ .||+.
T Consensus 4 ~~~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~ 37 (222)
T cd08880 4 YRQRIPGNWKLYAENVKDPYHASLLHLFFVTFGL 37 (222)
T ss_pred eeeecCCCcHHHHHhccCcchHHHHhhhheeeec
Confidence 356789999999999999999999999 88864
No 56
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.68 E-value=3.1e-08 Score=94.88 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=60.8
Q ss_pred CeeEEEEEcCCCc-----EEEeeccCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEe
Q 009233 239 EEPWVIFRGKDGI-----PGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ 312 (539)
Q Consensus 239 g~~vvl~R~~dG~-----v~A~~n~CpHRGa~Ls~-G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~ 312 (539)
+.+...++..++. +.|+...|+|.||.... +....+.|.|||||.+||.+|+.+..|+ +..|..+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA----~~~L~~~~~~~~ 158 (177)
T COG0723 83 GPKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPA----PRPLPIPPLEYD 158 (177)
T ss_pred cccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCC----CCCcCCceEEEe
Confidence 3444555554544 55999999999999998 5667899999999999999999998887 468899998887
Q ss_pred cCeEEE
Q 009233 313 EGMIWI 318 (539)
Q Consensus 313 ~G~IwV 318 (539)
.+-+++
T Consensus 159 ~d~~~~ 164 (177)
T COG0723 159 SDKLYL 164 (177)
T ss_pred CCceEE
Confidence 774444
No 57
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.56 E-value=3.4e-07 Score=92.03 Aligned_cols=84 Identities=10% Similarity=-0.046 Sum_probs=51.8
Q ss_pred EEEEec--CCCCeEEEEEEeeccchhhccCc------hhHHHHHHHH--HHHHHhhhHHHHHHHhhhccCCCCCCCCccc
Q 009233 438 LHVCLP--SSRKKTRLLYRMSLDFASVLKHV------PFMQYLWRHF--AEQVLNEDLRLVLGQQERMNNGANVWNLPVG 507 (539)
Q Consensus 438 l~~~~P--vs~~~tr~~~~~~~~f~~~~~~~------p~~~~~~~~~--~~~V~~ED~~IlE~qQ~~l~~g~~~~el~~~ 507 (539)
++.+.| .++++|.+...++....+..... ..+.... .+ ...|+.||..+++.+|+||.++........+
T Consensus 147 ~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~V~~ED~~~~e~vQ~Gl~S~~~~~~~l~~ 225 (243)
T cd08882 147 VYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAP-ELGGLGLVLDQDFSNLPAVQKGMHSRGFGGLVLAN 225 (243)
T ss_pred EEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCcccccccccc-ccccccchhHhHHHHHHHHHHHhccCCCCCcccCc
Confidence 445678 59999998776654332211110 1111111 12 3689999999999999999986543222223
Q ss_pred CC-hHHHHHHHHHHHH
Q 009233 508 YD-KLGVRYRLWRDAL 522 (539)
Q Consensus 508 aD-~~~v~yRrwl~~l 522 (539)
.. ..+..|.+|+++.
T Consensus 226 ~EE~~I~~FH~~l~~~ 241 (243)
T cd08882 226 QEESRIRHFHEVLDDY 241 (243)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 33 6778888988764
No 58
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=98.43 E-value=5.3e-07 Score=90.26 Aligned_cols=31 Identities=32% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEeecchhhHhhhcCCCCCCCCcCccccc
Q 009233 344 IVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (539)
Q Consensus 344 ~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~ 374 (539)
..+.++||||+.+||+.|.||++++|.+++.
T Consensus 4 ~~~~~~~nWK~~~en~~d~yH~~~~H~~~~~ 34 (237)
T cd08879 4 HRYRYRGNWKLQLENGTDGYHPPFVHASYVA 34 (237)
T ss_pred eEEEeeceEEEEeeecCccccCccccHHHHH
Confidence 4678899999999999999999999998874
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=98.36 E-value=1.6e-06 Score=85.24 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.5
Q ss_pred EEEEEeecchhhHhhhcC-CCCCCCCcCcccccc
Q 009233 343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAK 375 (539)
Q Consensus 343 ~~~~~~~~nwk~~vEN~l-D~~H~~~vH~~t~~~ 375 (539)
...+.++||||+++|||+ |.||++++|.+++..
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~ 41 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEA 41 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHh
Confidence 457789999999999998 999999999998754
No 60
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.30 E-value=1.2e-06 Score=89.95 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=52.6
Q ss_pred cCCCcEEEeeccCCCCCCCCCCC------c----------------------c---cCCeeeccCCCeeEcCC--CCccc
Q 009233 247 GKDGIPGCVQNTCAHRACPLHLG------S----------------------V---NEGRIQCPYHGWEYSTD--GKCEK 293 (539)
Q Consensus 247 ~~dG~v~A~~n~CpHRGa~Ls~G------~----------------------v---~~~~l~CPyHGW~Fd~~--G~c~~ 293 (539)
+.++.|+||+..|+|.||++..- . - ..+.|.|||||.+||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 35788999999999999998331 0 0 12489999999999963 57888
Q ss_pred cCCcccccccccccceEEe--cCeEEEc
Q 009233 294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (539)
Q Consensus 294 ~P~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (539)
.|+. ..|..+++... .|.||+-
T Consensus 253 GPA~----rpLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTV----RPLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCC----CCCCcceEEEeCCCCeEEEE
Confidence 8874 46888888775 4677763
No 61
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.27 E-value=9.2e-07 Score=84.78 Aligned_cols=73 Identities=27% Similarity=0.417 Sum_probs=62.1
Q ss_pred cCCCCCCCeEEEEECCeeEEEE--------------------------EcCCCcEEEeeccCCCCCCCCCCCcccCCeee
Q 009233 224 STDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQ 277 (539)
Q Consensus 224 ~~dL~~g~~~~~~l~g~~vvl~--------------------------R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~ 277 (539)
.++|++|.-.+++-.|+|+++- |.++-++.++-.+|+|.||-.....++.+...
T Consensus 92 l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~~ 171 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGYY 171 (210)
T ss_pred eecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCcee
Confidence 5678888888888888888773 33345678999999999999988888888999
Q ss_pred ccCCCeeEcCCCCccccCC
Q 009233 278 CPYHGWEYSTDGKCEKMPS 296 (539)
Q Consensus 278 CPyHGW~Fd~~G~c~~~P~ 296 (539)
|||||..||..|+..++|+
T Consensus 172 CPCHGSHYdasGRIrkGPA 190 (210)
T KOG1671|consen 172 CPCHGSHYDASGRIRKGPA 190 (210)
T ss_pred cccccccccccCceecCCC
Confidence 9999999999999999987
No 62
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.12 E-value=9.6e-06 Score=80.14 Aligned_cols=184 Identities=17% Similarity=0.243 Sum_probs=93.9
Q ss_pred CCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccc---cCCCCC---------ceeeeecCCCCCCccccCCCce-
Q 009233 336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA---KGWSVP---------SLVKFLTPASGLQGYWDPYPID- 402 (539)
Q Consensus 336 ~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~---~~~~vp---------~~v~~~~p~~~~~g~~~~~~~~- 402 (539)
++..+. .....+.|||.+.+||.+|+.|+ |+|+.+.- ..+..| ...+......++.|..+.+...
T Consensus 21 ~~~~~~-g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~~~~~~~ 98 (240)
T PF11723_consen 21 DDIVIF-GMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMDRLTEHY 98 (240)
T ss_dssp TTEEEE-EEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE-CHHHE
T ss_pred CcceEE-eeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeeecccccc
Confidence 344444 45678999999999999999998 99996431 111111 1112222233444433221100
Q ss_pred ------------eE--EcCceeEEEEeeecCCCCcCCCCcccc-ceeeEEEEEEecCCCCeEEEEEEeeccchhhccC-c
Q 009233 403 ------------ME--FRPPCMVLSTIGISKPGKLEGQNTRQC-ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKH-V 466 (539)
Q Consensus 403 ------------~~--f~~P~~vl~~~~~~~pg~~~~~~~~~~-~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~-~ 466 (539)
.. -..|..+...+++.-||-+. +..+ ..++.++-..+|+++++.+++..+...-. ..++ .
T Consensus 99 ~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~---V~~~P~p~~~qyEwYVPID~~~h~Y~q~l~~~~~-t~ee~~ 174 (240)
T PF11723_consen 99 EPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLM---VENWPYPDFTQYEWYVPIDEDTHRYFQLLGKVCP-TEEERK 174 (240)
T ss_dssp EEESEEEETTEEEEE-BESSBE--SEEEEETTTEEE---EES-SSTTEEEEEEEEEEETTEEEEEEEEEEE-S-SHHHHH
T ss_pred eEEEecccCCceeecCCCCCceeEEEeeEeccceee---cccCCCCCeeEEEEEEEecccceeeEeEEeeecC-CHHHHH
Confidence 00 00122222222233333111 1111 13456666679999999998876653212 1111 1
Q ss_pred hh---HHHHHH-HHHHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHHcC
Q 009233 467 PF---MQYLWR-HFAEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKG 525 (539)
Q Consensus 467 p~---~~~~~~-~~~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~~g 525 (539)
.+ +...|+ .....++.+|+...|+.|+=...+.. ..|.....|+.++++||...+..+|
T Consensus 175 ~f~~~f~~~~~~~~l~gFN~~D~wAREamq~fY~d~~Gw~~E~L~~~D~sIi~WRkLas~~nrg 238 (240)
T PF11723_consen 175 AFEYEFEEQWKPLALHGFNDDDIWAREAMQPFYADDTGWDREQLFEPDKSIIAWRKLASEHNRG 238 (240)
T ss_dssp HHHHHHHHTHHHHTTTTTTHHHHHHHHHHHHHHHTSHHHHH----GGGHHHHHHHHHHHHH-SE
T ss_pred HHHHHHHHHhHHhhccCCCchhHHHHHHhhhhhhccCCCCHHHhcCcchhHHHHHHHHHHhhcc
Confidence 11 122232 23456888999999999986665311 1256778999999999999887654
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.55 E-value=0.019 Score=62.50 Aligned_cols=38 Identities=34% Similarity=0.804 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccCCcc
Q 009233 261 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 298 (539)
Q Consensus 261 HRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P~~~ 298 (539)
|.|+||..|-...++++||+||..|+. +|....-|...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 899999999878899999999999995 99988888753
No 64
>PRK14127 cell division protein GpsB; Provisional
Probab=77.11 E-value=6.6 Score=35.05 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=21.4
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009233 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~ 149 (539)
.|-+-|..+|.+|. +|-+|++.|++++.+...++--.++|+.
T Consensus 27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666543 4444555555555544444444444433
No 65
>PRK14161 heat shock protein GrpE; Provisional
Probab=71.43 E-value=19 Score=34.87 Aligned_cols=55 Identities=29% Similarity=0.418 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
||...-.|.++++++. +..|++|+++|.+.|.+++....+...|.....+....+
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~ 66 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY 66 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778899988874 578999999999999999999999999999988888876
No 66
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=65.69 E-value=17 Score=33.25 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHHhhh
Q 009233 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVHIS 144 (539)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (539)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-++..
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L 118 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELL 118 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 459999999999988875554443 4457777888888876655544444
No 67
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=60.47 E-value=39 Score=27.43 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=45.3
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 009233 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e 159 (539)
+-+||...|.--.+=+.-...|+.+++.++.|-++-..+......||+.-++++.-||
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4456655554443333346689999999999999999999999999999999988776
No 68
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=60.07 E-value=48 Score=28.74 Aligned_cols=26 Identities=35% Similarity=0.449 Sum_probs=22.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHh
Q 009233 117 YKSIGTMKKELAELQEDLAQAHRQVH 142 (539)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (539)
.||+.+|+.|++-|||++.++-.+.-
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~kea 26 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEA 26 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998876654
No 69
>PRK14156 heat shock protein GrpE; Provisional
Probab=58.79 E-value=41 Score=32.55 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
.+.|.||..+-+-+.+ +..|+++++.|++.|.++.....+...|..........+
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~ 74 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRY 74 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665555555 788999999999999999999999999999888887775
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.74 E-value=33 Score=30.26 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHhhhhc
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~r~l~ 168 (539)
+...+++|++.+++++++...+..-.++.|..-=+.-..+|+++|.+|--
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~ 77 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGM 77 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCC
Confidence 46678888888888888877777777777763223346668899888744
No 71
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.48 E-value=33 Score=27.72 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=36.8
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHhhhh
Q 009233 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLL 167 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~r~l 167 (539)
.+..+..++.|++.|+.++.+...+.--.+..+..--+.-..+|+++|.++.
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lg 66 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLG 66 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcC
Confidence 3445667888888888888888877777776665432555666888887763
No 72
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=55.41 E-value=66 Score=31.03 Aligned_cols=88 Identities=22% Similarity=0.288 Sum_probs=45.1
Q ss_pred eehhhHHHHhhhcce---ee------cc----ccchh---HHHHHHHHHHHHHhhChhhhhccchhhHHHHH----HHHH
Q 009233 72 LDVNQALEVARYDIQ---YC------DW----RARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKEL----AELQ 131 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~---~~------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 131 (539)
--||+|.++++-.+. |+ |- .+..| |..+|++|++++|+-+ +.+...+..|+.++ .++.
T Consensus 57 ~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~~--~~d~~~L~~l~~e~~~~~~~~~ 134 (176)
T PRK03578 57 TRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARA--ARDVDALDALLAELRDERRERY 134 (176)
T ss_pred HHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHH
Confidence 578999998876552 21 11 23345 5589999999998642 11222233333333 3333
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 009233 132 EDLAQAHRQVHISEARVATALDKLAYMEALV 162 (539)
Q Consensus 132 ~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~ 162 (539)
.++.++=..-+- =......+.++.++.++.
T Consensus 135 ~~l~~~~~~~~d-~~~A~~~~~kL~y~~kl~ 164 (176)
T PRK03578 135 AELGALLDSRGD-DQAAAEAVRQLMFIEKLA 164 (176)
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHHH
Confidence 333333211011 123345666666665543
No 73
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=55.41 E-value=8.6 Score=35.38 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=25.0
Q ss_pred eeccCCCCCCCCCCCcccCCeeeccCCCeeEc
Q 009233 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd 286 (539)
+...||-.|+||-. .+|.+.||-||-++-
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 35689999999997 678999999998775
No 74
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=53.67 E-value=7.7 Score=34.67 Aligned_cols=26 Identities=35% Similarity=0.690 Sum_probs=20.3
Q ss_pred CCCCCCCccc--CCeeeccCCCeeEcCC
Q 009233 263 ACPLHLGSVN--EGRIQCPYHGWEYSTD 288 (539)
Q Consensus 263 Ga~Ls~G~v~--~~~l~CPyHGW~Fd~~ 288 (539)
.+||-.|... -+.+.||+||=--+.|
T Consensus 73 rAPL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 73 RAPLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred cCCCCCCCcCCccCcccCCCCCcccCCC
Confidence 5788888765 3578999999988854
No 75
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=53.53 E-value=1e+02 Score=27.25 Aligned_cols=80 Identities=20% Similarity=0.354 Sum_probs=51.0
Q ss_pred CCCCCeEEEEE--CC--eeEEEEEcCCCcEEEeeccCCCCCCCCCCCc-ccCCeeeccCCCeeEcC------CCCccccC
Q 009233 227 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST------DGKCEKMP 295 (539)
Q Consensus 227 L~~g~~~~~~l--~g--~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~-v~~~~l~CPyHGW~Fd~------~G~c~~~P 295 (539)
|++|..+.+.+ .| .++++++..+|++.+..|.|-=.+ ..|- ..++.++|-..|-+|.. .|.|-.+|
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P 78 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNLPTIGGKSGGCNPIP 78 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEehhhcccccCCCCccC
Confidence 44444444443 33 356788889999999999886442 1121 35789999999999984 23343322
Q ss_pred CcccccccccccceEEecCeEEEcC
Q 009233 296 STQLRNVKIKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~IwV~l 320 (539)
.+-.+.+|.|-|..
T Consensus 79 -----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 79 -----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred -----------CceEecCCeEEEeH
Confidence 24566778887743
No 76
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.33 E-value=83 Score=31.73 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=19.0
Q ss_pred CCCeEEEEE--CCeeEEEEEcCCCcEEEeec
Q 009233 229 DDTMVPFDC--FEEPWVIFRGKDGIPGCVQN 257 (539)
Q Consensus 229 ~g~~~~~~l--~g~~vvl~R~~dG~v~A~~n 257 (539)
+|..+.+++ .|.=-.+|++.||+-..+.|
T Consensus 178 dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~ 208 (251)
T PF11932_consen 178 DGEERQVDFLRLGRVALYYQTLDGSQAGVWD 208 (251)
T ss_pred CCeEEEEEEEeecchhheeECCCccceeeec
Confidence 566666665 56666777888886554444
No 77
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=50.51 E-value=59 Score=26.52 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHhhhhHHHHHHHH
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 163 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~rv~~~L~~~~~~e~~~~ 163 (539)
+|...|+++|.+|++||.+-.-|-.+.. .++...--.++.+..+.+
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~~ir~~Rk~IARi~Tvl~ 62 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGGAPENPGRIREIRRTIARILTIQR 62 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999887766665 355555555555544443
No 78
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=49.93 E-value=80 Score=30.40 Aligned_cols=91 Identities=18% Similarity=0.334 Sum_probs=55.3
Q ss_pred ceeehhhHHHHhhhcce---ee----------ccccchh--HH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 009233 70 KFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~----------~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (539)
++--||+|.++++-++. |. ++ +.+| +| .+|++|+++.|+-++- +-..+..+++++...+++
T Consensus 53 ~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~ 129 (173)
T PRK00294 53 RSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQDE 129 (173)
T ss_pred HHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHH
Confidence 57789999998765432 11 22 2323 33 8999999999886652 333456677777777666
Q ss_pred HHHHHHHHhhh---HHHHHHHhhhhHHHHHHHH
Q 009233 134 LAQAHRQVHIS---EARVATALDKLAYMEALVN 163 (539)
Q Consensus 134 ~~~~~~~~~~~---e~rv~~~L~~~~~~e~~~~ 163 (539)
+.++-.+.=-. =......+.|+.+|.++..
T Consensus 130 l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl~~ 162 (173)
T PRK00294 130 LNESFAACWDDAARREEAERLMRRMQFLDKLAQ 162 (173)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 66554432100 1344567777777765543
No 79
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=48.83 E-value=10 Score=33.75 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=24.5
Q ss_pred eccCCCCCCCCCCCcccCCeeeccCCCeeEcCC
Q 009233 256 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (539)
Q Consensus 256 ~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~ 288 (539)
..+||+.|+.... ++..-++|||.|-.|...
T Consensus 9 KR~Cp~CG~kFYD--Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD--LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc--CCCCCccCCCCCCccCcc
Confidence 4589999988763 233679999999999965
No 80
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=48.36 E-value=1.1e+02 Score=28.33 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=61.6
Q ss_pred CCceeehhhHHHHhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009233 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (539)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r 147 (539)
.+...|+.+.+.++--=| -+-+.|.-.-+.+++++-..-+.+.+-...+..|+.+++.++.+++.++.+.-..+..
T Consensus 27 ~~~~~~~~~vin~i~~Ll----~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLL----QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666655542111 1234566667778888888888888888889999999999999999888888888777
Q ss_pred HHHHhhhhHHH
Q 009233 148 VATALDKLAYM 158 (539)
Q Consensus 148 v~~~L~~~~~~ 158 (539)
+......+...
T Consensus 103 ~~~~~~~~k~~ 113 (151)
T PF11559_consen 103 LKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHH
Confidence 77666665554
No 81
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=47.46 E-value=37 Score=34.57 Aligned_cols=49 Identities=29% Similarity=0.359 Sum_probs=43.7
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009233 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~ 150 (539)
|-.+|+|+||++..=.-++..|.||-+.+.+++.|-++|+.-.++|+++
T Consensus 188 AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~ 236 (244)
T COG1938 188 AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVER 236 (244)
T ss_pred HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999999999999999999888887764
No 82
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=46.92 E-value=15 Score=31.98 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.0
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009233 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (539)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (539)
+++++..+-.++|.+|.|.+..||-||+.|+.
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566677899999999999999999874
No 83
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=46.55 E-value=96 Score=28.21 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=42.6
Q ss_pred CceeehhhHHHHhhhcceeeccccchhH-------H----HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 009233 69 GKFLDVNQALEVARYDIQYCDWRARQDV-------L----TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (539)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (539)
+.-+|+.+.++-+.|||+.+|=+-++=+ | .|..+.. +++.+++ ++..|..-..-|+.|+..-
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~-~l~~v~~------~v~~L~~s~~RL~~eV~~P 98 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES-VLQAVRS------SVESLQSSYERLRSEVIEP 98 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH-HHHHHHH------HHHHHHHHHHHHHHHHhhH
Confidence 4568999999999999999997665432 2 4445554 4444443 3445555555555555555
Q ss_pred HHHHhhh
Q 009233 138 HRQVHIS 144 (539)
Q Consensus 138 ~~~~~~~ 144 (539)
|+++...
T Consensus 99 y~~~~~~ 105 (132)
T PF10392_consen 99 YEKIQKL 105 (132)
T ss_pred HHHHHHH
Confidence 5544433
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.52 E-value=1e+02 Score=25.45 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 125 KELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
++-..|.++..+-...-..-+.|+..-|.|+..
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 335566666666666666777888888888654
No 85
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=41.80 E-value=1.3e+02 Score=28.07 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=39.0
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHH
Q 009233 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~ 163 (539)
|+-+.+++..|++|+...+..|.+....+...|..+...-..+...++-.+
T Consensus 36 L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~ 86 (160)
T PF13094_consen 36 LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAH 86 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344567888888888888888888888888888888877777776554443
No 86
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.42 E-value=1.1e+02 Score=31.60 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e 159 (539)
+...+++|..++|++.++...+.-...|+...-+||+.++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999999989988885
No 87
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.38 E-value=21 Score=28.48 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=27.7
Q ss_pred eeccCCCCCCCCCCCcccCCeeeccCCCeeEcCC
Q 009233 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~ 288 (539)
.+-.||+.|..... ...+..+.||-.|..+|.|
T Consensus 27 TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK-RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCccccccc-ccccceEEcCCCCCEECcH
Confidence 58889999988877 4567899999999999964
No 88
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=40.77 E-value=83 Score=24.49 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e 145 (539)
+|...|+++|.+|.+||.+...|-.+..
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999999999999887766554
No 89
>PRK04654 sec-independent translocase; Provisional
Probab=38.19 E-value=1.2e+02 Score=30.23 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~ 156 (539)
+|-.+.+-+-.+.+.+.||.+ ...||++|..+++++..+..++..+...+.++=..+.
T Consensus 35 ~irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~ 92 (214)
T PRK04654 35 WVRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566667788888888887 6788888888888888888888888777775555443
No 90
>PRK00420 hypothetical protein; Validated
Probab=37.07 E-value=25 Score=31.56 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=25.9
Q ss_pred eeccCCCCCCCCCCCcccCCeeeccCCCeeEcC
Q 009233 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~ 287 (539)
....||-.|+||..- .++...||-||-.+.-
T Consensus 22 l~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 22 LSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIV 52 (112)
T ss_pred ccCCCCCCCCcceec--CCCceECCCCCCeeee
Confidence 568999999999854 5688999999998873
No 91
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=36.99 E-value=90 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009233 121 GTMKKELAELQEDLAQAHRQV 141 (539)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (539)
=+||++|...+.||+.|=||-
T Consensus 25 f~LRk~l~~~rqELs~aLYq~ 45 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQH 45 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999998884
No 92
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=36.78 E-value=1e+02 Score=30.62 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=38.8
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
.||.+-+ |.+|+.||+++..+..++..|+..+....+.-..+..+.+.-
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~s 72 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSS 72 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 899999999999999999988888887777777777766643
No 93
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=36.29 E-value=2.3e+02 Score=22.93 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHH
Q 009233 97 LTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQ 131 (539)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (539)
.-+|++|+.+.++-+. +....+..|++++....
T Consensus 8 me~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~~ 40 (78)
T PF07743_consen 8 MEQMELREELEEAQNS--DDEAELEELKKEIEERI 40 (78)
T ss_dssp HHHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHH
Confidence 3799999999998654 22244555555544433
No 94
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=35.85 E-value=1.7e+02 Score=28.10 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=44.5
Q ss_pred eehhhHHHHhhhcce---e-e----------ccccchh--HH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH--
Q 009233 72 LDVNQALEVARYDIQ---Y-C----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE-- 132 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~---~-~----------~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 132 (539)
--||+|..+++-.+. | | +=.+..| .| .+|++|++++|+ .-+++...+..|++++....+
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHH
Confidence 457888877765551 2 1 1123333 22 788999999886 224444555555555444333
Q ss_pred --HHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 009233 133 --DLAQAHRQVHISEARVATALDKLAYMEALV 162 (539)
Q Consensus 133 --~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~ 162 (539)
++.+|=..-.. ......+.|+.++.++.
T Consensus 131 ~~~l~~~~~~~d~--~~A~~~~~rL~y~~kl~ 160 (173)
T PRK01773 131 LTELSTALNSQQW--QQASQINDRLRFIKKLI 160 (173)
T ss_pred HHHHHHHHhcCCH--HHHHHHHHHHHHHHHHH
Confidence 33322211111 33445566666665443
No 95
>PRK09039 hypothetical protein; Validated
Probab=35.79 E-value=1.5e+02 Score=31.62 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=6.4
Q ss_pred HHHHhhhHHHHHHHh
Q 009233 138 HRQVHISEARVATAL 152 (539)
Q Consensus 138 ~~~~~~~e~rv~~~L 152 (539)
+.++...++++..+|
T Consensus 171 ~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 171 QAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444444
No 96
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=35.42 E-value=1e+02 Score=25.42 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=29.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHhhh
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRL 166 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~r~ 166 (539)
++..+..+++.++.++.+...+.--.+..++ .|+.-...|++++..|
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~l 71 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhc
Confidence 3456666666666666666555555544444 4555666777888776
No 97
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.28 E-value=1.8e+02 Score=29.32 Aligned_cols=42 Identities=21% Similarity=0.376 Sum_probs=20.4
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
....+..++.++..+++.+.+-..++.....++.+.-.++..
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~ 95 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEE 95 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444444444444433
No 98
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=33.84 E-value=46 Score=29.25 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=38.1
Q ss_pred ccchhHH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 009233 91 RARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (539)
Q Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (539)
-.|+|+. .+.||+-.+ -+|.-.=...|.+|+.||..+|.|+..++.|+
T Consensus 52 ~~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 52 EQREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred cchhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3477777 556777654 57887888889999999999999999998764
No 99
>PRK14147 heat shock protein GrpE; Provisional
Probab=33.32 E-value=1.3e+02 Score=28.91 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++|+++|++.|.++.....+-..|..........+
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988888776
No 100
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=33.25 E-value=16 Score=31.61 Aligned_cols=52 Identities=4% Similarity=0.082 Sum_probs=39.6
Q ss_pred ccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCC
Q 009233 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267 (539)
Q Consensus 212 ~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls 267 (539)
+.+...||.+.. .+|+-..++.+|+.+..+-.......+|...-|++|+.++
T Consensus 3 ~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 3 PDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp --TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 345778999866 4899999999999998887777777889999999887655
No 101
>PRK11637 AmiB activator; Provisional
Probab=32.17 E-value=1.6e+02 Score=32.02 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~ 151 (539)
.+..++++|..+++++.+...++...++++...
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555554433
No 102
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=32.04 E-value=99 Score=32.03 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
+...+..+-....++...+|++|-+.|.+|+++...+.......+.+...+|+.
T Consensus 52 ~~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 52 NRPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777788888888888888887755555444445555555444
No 103
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=32.01 E-value=2e+02 Score=28.89 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.4
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHhhhhcc
Q 009233 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQD 169 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~r~l~~ 169 (539)
.+|+++.+.=+|.--=.-.|..++++|..+...++++..+-+.+|.++.........|++-++..+..+
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 467777777777633233489999999999999999999999999999999999999876666666554
No 104
>PRK09039 hypothetical protein; Validated
Probab=31.25 E-value=1.7e+02 Score=31.16 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHH
Q 009233 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~ 163 (539)
++..+.....+..+.-|..|+.|++.|.+++++....+.-+|+|-...=.++..++...+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343344444444455566666666666666666666666665555555555543333
No 105
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.90 E-value=65 Score=25.33 Aligned_cols=32 Identities=38% Similarity=0.420 Sum_probs=21.8
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 009233 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (539)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (539)
|.=|.+.+=-.+++|+|+|+.+|.+++.+-.+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555556688999999888887765443
No 106
>PRK14164 heat shock protein GrpE; Provisional
Probab=30.88 E-value=1.5e+02 Score=29.83 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=37.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
.-+..|++||++|.+.|.++.....+...|..........+
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~ 117 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIET 117 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888999999999999999999999999999888887776
No 107
>PRK14141 heat shock protein GrpE; Provisional
Probab=30.11 E-value=1.5e+02 Score=29.52 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++|+++|++.|+++.....+...|..........+
T Consensus 40 i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 40 LEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888888888988888887776
No 108
>PRK14157 heat shock protein GrpE; Provisional
Probab=29.70 E-value=1.6e+02 Score=29.80 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++|++++++.|.++.....+...|......+...+
T Consensus 86 l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~ 124 (227)
T PRK14157 86 LGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQH 124 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999988888886
No 109
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.62 E-value=54 Score=36.76 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=34.9
Q ss_pred CeeEEEEEcCCCcE---E----EeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCc
Q 009233 239 EEPWVIFRGKDGIP---G----CVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 291 (539)
Q Consensus 239 g~~vvl~R~~dG~v---~----A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c 291 (539)
|++++|+-+..|-. . ...-.|||.+.+|..-+ ..+.+.|.|.|++....-.|
T Consensus 198 g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~~~~C 256 (505)
T TIGR00595 198 GEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHK-KEGKLRCHYCGYQEPIPKTC 256 (505)
T ss_pred CCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEec-CCCeEEcCCCcCcCCCCCCC
Confidence 45566664444421 1 23456999999998765 45799999999998855444
No 110
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.57 E-value=1.7e+02 Score=28.49 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|++.|.++.....+...|..........+
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999998888886
No 111
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=27.95 E-value=1.2e+02 Score=27.09 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 009233 104 EKVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (539)
Q Consensus 104 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~ 162 (539)
-.-||||.|.- ==.-.|..+|+++|.|..|-.+||.+ +-.||-+|+.|.
T Consensus 12 peevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~EmdnmL 64 (127)
T PF15155_consen 12 PEEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNML 64 (127)
T ss_pred chhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHHH
Confidence 34578888865 12245888999999999999999875 445666665543
No 112
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.94 E-value=36 Score=31.27 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=24.4
Q ss_pred eccCCCCCCCCCCCcccCCeeeccCCCeeEcCC
Q 009233 256 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (539)
Q Consensus 256 ~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~ 288 (539)
...||+.|+.... ++..-++|||.|-.|...
T Consensus 9 Kr~Cp~cg~kFYD--Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD--LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc--cCCCCccCCCcCCccCcc
Confidence 4579999988763 234789999999999865
No 113
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=27.91 E-value=39 Score=23.84 Aligned_cols=28 Identities=25% Similarity=0.509 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCCccc---CCeeeccCCCee
Q 009233 257 NTCAHRACPLHLGSVN---EGRIQCPYHGWE 284 (539)
Q Consensus 257 n~CpHRGa~Ls~G~v~---~~~l~CPyHGW~ 284 (539)
+.||+-|.+|...... -.+.+||--||.
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred CccccccChhhhhcCCCCCccceECCCCCCE
Confidence 4799999999875442 248999988875
No 114
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.55 E-value=1.8e+02 Score=28.94 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++|+++|++.|.+++....+...|......+...+
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 60 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAY 60 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999988887776
No 115
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.08 E-value=75 Score=28.42 Aligned_cols=7 Identities=29% Similarity=1.232 Sum_probs=3.1
Q ss_pred cceeecc
Q 009233 84 DIQYCDW 90 (539)
Q Consensus 84 ~~~~~~~ 90 (539)
.|.|||-
T Consensus 38 ~vtf~~l 44 (118)
T PF13815_consen 38 NVTFCDL 44 (118)
T ss_pred hcceecc
Confidence 3444443
No 116
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=27.08 E-value=3.1e+02 Score=30.39 Aligned_cols=58 Identities=14% Similarity=-0.002 Sum_probs=34.2
Q ss_pred EEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHHHH-------HhhhHHHHHHHhhhccCCC
Q 009233 438 LHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQV-------LNEDLRLVLGQQERMNNGA 499 (539)
Q Consensus 438 l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~~~~V-------~~ED~~IlE~qQ~~l~~g~ 499 (539)
+....|+++++|.+.+....... +-+.+.+........+ -.+|.++.+.+|+++....
T Consensus 318 iRv~~P~~~d~tev~~~~~~~k~----~~~e~~~~r~r~~~~~~gpsG~~~~DD~e~~~~~q~g~~~~~ 382 (438)
T TIGR03228 318 LRIIRPVAWNKTEIISQCIGVKG----ESDADRENRIRQFEDFFNVSGMGTPDDLVEFREAQRGFQGRL 382 (438)
T ss_pred EEEEEeCCCCeEEEEEEEEEECC----CCHHHHHHHHHHHhcccCCccCCCCchHHHHHHHHHHhccCC
Confidence 45578999999998876543211 1112222111122222 3389999999999887443
No 117
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=27.06 E-value=78 Score=32.73 Aligned_cols=57 Identities=26% Similarity=0.431 Sum_probs=45.1
Q ss_pred ccccccccccccccceE-EEEEecCCCccccccccceeeeeccCCCCCCCCCCCceee
Q 009233 17 YRPAKINTKKSVRGGFR-VFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLD 73 (539)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (539)
+..+.+.-.|-+||||- +|-.||.=|.+..-.-+....+.||++-+..|.+..-+.|
T Consensus 60 S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vd 117 (305)
T KOG1594|consen 60 STKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVD 117 (305)
T ss_pred chhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEE
Confidence 44467788899999996 6899998877776666677778899999999976666665
No 118
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.06 E-value=2e+02 Score=27.88 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|++.+.++.....+...|..........+
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~ 67 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKF 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888887776
No 119
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.16 E-value=1.7e+02 Score=33.36 Aligned_cols=57 Identities=23% Similarity=0.371 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~ 154 (539)
.+.+.++|+.+-|+-|-----+.+.|+++++.++++|.+|=.+++.+.......|.+
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~ 378 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEK 378 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677888888877766666688999999999999999988888888777777766
No 120
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.94 E-value=2e+02 Score=30.20 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=10.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCe
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEE 240 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~ 240 (539)
.|-.+..+ |..+.+.+.+.
T Consensus 293 gw~~~~~~-----~~~l~~~~~~~ 311 (325)
T PF08317_consen 293 GWKIVSIS-----GSTLEFRYKDE 311 (325)
T ss_pred CcEEEEEe-----CCeEEEEEcCE
Confidence 45555444 44556666555
No 121
>PRK14163 heat shock protein GrpE; Provisional
Probab=25.77 E-value=2e+02 Score=28.86 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++..|.+.|.+++....+...|..........+
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999888887776
No 122
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=25.71 E-value=1.3e+02 Score=27.18 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=30.4
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
|.....+|..|+..|.++++++...+..+......|+..|......
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKEL 109 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778899999999999999999999999999888887765
No 123
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=25.67 E-value=1.4e+02 Score=29.18 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=41.1
Q ss_pred cCCCCCCCeEEEEECC--eeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCee
Q 009233 224 STDLKDDTMVPFDCFE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWE 284 (539)
Q Consensus 224 ~~dL~~g~~~~~~l~g--~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~ 284 (539)
++++..||.+...+.. .++.|.= ....+-+...+|+-.+.+|.. .+..+.||-.|-+
T Consensus 116 ~d~f~~GDivrA~Vis~~~~~~Lst-~~~dlGVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~t 174 (188)
T COG1096 116 SDAFRIGDIVRARVISTGDPIQLST-KGNDLGVIYARCSRCRAPLVK---KGNMLKCPNCGNT 174 (188)
T ss_pred ccccccccEEEEEEEecCCCeEEEe-cCCcceEEEEEccCCCcceEE---cCcEEECCCCCCE
Confidence 3566778887777644 5666653 456677777788888888886 5689999987754
No 124
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=25.33 E-value=2.2e+02 Score=34.15 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=54.9
Q ss_pred CceeehhhHHHHhhhcceeeccccchhHH-HHHHHHHHHHHhhChhhh-------hccchhhHHHHHHHHHHHHHHHHHH
Q 009233 69 GKFLDVNQALEVARYDIQYCDWRARQDVL-TIMLLHEKVVEVLNPLAR-------DYKSIGTMKKELAELQEDLAQAHRQ 140 (539)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (539)
-||=|+-+-+|..+-+|. |+- -+..++++|+++=+..-| ..+.+..||.||+.|+.|+++....
T Consensus 445 ~K~~di~kQle~~~~s~~--------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~ 516 (980)
T KOG0980|consen 445 RKYDDIQKQLESAEQSID--------DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666777766664 333 455788888877666655 2345778999999999999999888
Q ss_pred HhhhHHHHHHHhhhhHH
Q 009233 141 VHISEARVATALDKLAY 157 (539)
Q Consensus 141 ~~~~e~rv~~~L~~~~~ 157 (539)
+-++..+=..-+..+..
T Consensus 517 ~~~~~qs~~~~~~~l~~ 533 (980)
T KOG0980|consen 517 LSNLAQSHNNQLAQLED 533 (980)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 66666555544444433
No 125
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=25.20 E-value=32 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.609 Sum_probs=19.8
Q ss_pred cCCeeec-----cCCCeeEcCCCCccccCC
Q 009233 272 NEGRIQC-----PYHGWEYSTDGKCEKMPS 296 (539)
Q Consensus 272 ~~~~l~C-----PyHGW~Fd~~G~c~~~P~ 296 (539)
.++.++| |||.|-|+..|.|+.-+.
T Consensus 18 ~dDiVvCp~CgapyHR~C~~~~g~C~~~~c 47 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRDCWEKAGGCINYSC 47 (54)
T ss_pred CCCEEECCCCCCcccHHHHhhCCceEeccC
Confidence 4567777 599999999999987553
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.80 E-value=1.5e+02 Score=29.42 Aligned_cols=45 Identities=11% Similarity=0.205 Sum_probs=0.0
Q ss_pred ChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 111 NPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
.|-+|++ +..|++||++|+++|+.++.++-...+.+.+.+.....
T Consensus 88 ~p~~~~r--lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 132 (206)
T PRK10884 88 TPSLRTR--VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS 132 (206)
T ss_pred CccHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 127
>PRK14162 heat shock protein GrpE; Provisional
Probab=24.52 E-value=1.9e+02 Score=28.40 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|+++++.|++.|.++.....+...|..........+
T Consensus 48 l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 48 IADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999888887776
No 128
>PRK14159 heat shock protein GrpE; Provisional
Probab=23.95 E-value=2.2e+02 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
..+..|++++++|.+.|.++.....+-..|..........+
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~ 70 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAY 70 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999998888876
No 129
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.80 E-value=3.3e+02 Score=23.98 Aligned_cols=54 Identities=11% Similarity=0.105 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~ 151 (539)
.|.+-..|-+.++.-...|.+.......+|..|+.++...+....-.+.+|..-
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888999999999999999999999999999998888887777776643
No 130
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.66 E-value=2.4e+02 Score=27.67 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|.+.|.++.....+...|..........+
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~ 83 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY 83 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999888887776
No 131
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=23.47 E-value=2.5e+02 Score=21.86 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (539)
+|...|+++|.+|.+||.+-..|..+.
T Consensus 7 ls~~eL~~~l~elk~eL~~Lr~q~~~~ 33 (58)
T PF00831_consen 7 LSDEELQEKLEELKKELFNLRFQKATG 33 (58)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568889999999999999888776664
No 132
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=23.28 E-value=1.4e+02 Score=26.01 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (539)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHH
Confidence 889999999999999999887 889999999998888653
No 133
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=23.13 E-value=1.5e+02 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=11.5
Q ss_pred HHHHHHHHhhChhhhhc
Q 009233 101 LLHEKVVEVLNPLARDY 117 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~ 117 (539)
++||-|.-.|.-+.-.-
T Consensus 8 eLHD~v~q~L~~i~~~l 24 (68)
T PF07730_consen 8 ELHDGVGQSLTAIKMQL 24 (68)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 78888877776655443
No 134
>PRK14154 heat shock protein GrpE; Provisional
Probab=23.04 E-value=2.5e+02 Score=27.98 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|++.|.++.....+...|..........+
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~ 99 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888988887777776
No 135
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=22.91 E-value=2.9e+02 Score=23.70 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=34.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhhhHHHHHHHHhhhhc
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISE----ARVATALDKLAYMEALVNDRLLQ 168 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e----~rv~~~L~~~~~~e~~~~~r~l~ 168 (539)
+|...|+++|.+|++||.+-..|-.+.+ .|+...--.++.+..+.+.+-++
T Consensus 8 lS~eEL~e~L~elkkELf~LR~q~atgql~n~~~ir~iRR~IARilTvl~Ek~~~ 62 (87)
T PRK00461 8 KSVEELEKLVIELKAELFTLRFKNATGSLDQTHKIKEIRKDIARILTILNERELE 62 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999988776544432 34555555666666666655544
No 136
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=22.89 E-value=2e+02 Score=30.44 Aligned_cols=46 Identities=24% Similarity=0.442 Sum_probs=38.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHh
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~ 164 (539)
.|.-|++++.+|+++|.+...+++++..++.-|..+-+=++.+..+
T Consensus 176 ~v~LLqkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLdd 221 (323)
T PF08537_consen 176 RVILLQKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDD 221 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3677999999999999999999999999999888887666655543
No 137
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.81 E-value=80 Score=31.11 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 009233 122 TMKKELAELQEDLAQAHRQVHI 143 (539)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ 143 (539)
.||+||++|++++.++......
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999988776
No 138
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=22.42 E-value=2.9e+02 Score=22.12 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=20.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHI 143 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (539)
+|...|.++|.+|++||.+-..|-.+
T Consensus 9 ls~~eL~~~l~~lkkeL~~lR~~~~~ 34 (66)
T PRK00306 9 LSVEELNEKLLELKKELFNLRFQKAT 34 (66)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999877755433
No 139
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.35 E-value=1.7e+02 Score=32.18 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=52.5
Q ss_pred hHHHHhhhcceeeccccc-hhHH---HHH----------HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHH
Q 009233 76 QALEVARYDIQYCDWRAR-QDVL---TIM----------LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (539)
.||+|+-|.--|.+=-.+ .|.+ .|. .-|.+--|-+|.++.+-.+..+....|..||++|.+|+..-
T Consensus 196 kalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~ 275 (575)
T KOG4403|consen 196 KALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQ 275 (575)
T ss_pred hhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 378888888888775555 5654 111 34778888899999999999999999999999999998773
No 140
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.22 E-value=2.5e+02 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|++.|.+++....+...|..........+
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~ 101 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKE 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999988888876
No 141
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.8e+02 Score=29.38 Aligned_cols=75 Identities=23% Similarity=0.295 Sum_probs=54.9
Q ss_pred hhhHHHHhhhcceeeccccchhHHHHH-HHHHHHHHhhCh-hhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 009233 74 VNQALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNP-LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (539)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~ 151 (539)
..|-|.+.||||+ |+-=.|-+.|| -+-+-|-|.|.- .+-+-.|+-.+++|++.|--+|..+.+---....|+.++
T Consensus 252 a~Q~La~~~~~~E---~~GL~~e~~~~~~~~e~~~E~~~~s~ss~~~sm~r~~~qva~~a~~~~~~RQ~N~~L~~~L~e~ 328 (402)
T COG3551 252 ALQQLAVDRFDIE---WKGLEREFSRAMPLLEYVGELLWQSASSHNESMTRFSEQVADLAMSYTAQRQLNDGLRDRLLEA 328 (402)
T ss_pred HHHHHHHHhcCcc---hhhHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 3566778899998 88777777554 566777777754 445677888899999999888888777666666666543
No 142
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=21.56 E-value=2.2e+02 Score=28.49 Aligned_cols=61 Identities=21% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
.|..|-.++.++-+-.----.+|..|.+++..|.++|.....+......-+-++|+.+..|
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
No 143
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.44 E-value=2.7e+02 Score=28.30 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|+++++.|++.|.++.....+-..|.......+..+
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~ 114 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQ 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888887776
No 144
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=21.37 E-value=4.2e+02 Score=25.29 Aligned_cols=89 Identities=13% Similarity=0.290 Sum_probs=44.1
Q ss_pred ceeehhhHHHHhhhcce---e----eccc------cch--h-HHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHHH
Q 009233 70 KFLDVNQALEVARYDIQ---Y----CDWR------ARQ--D-VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQE 132 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~----~~~~------~~~--~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 132 (539)
++--||+|.++++-++. | --+. +.. + |..+|++|++++++-+. .+ ...+..|++++....+
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~~ 127 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQS--KDPEAALESFIKRVKKMFK 127 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhccc--cCHHHHHHHHHHHHHHHHH
Confidence 56679999998864432 2 1111 111 2 23789999999877432 11 1224444444444333
Q ss_pred H----HHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 009233 133 D----LAQAHRQVHISEARVATALDKLAYMEALV 162 (539)
Q Consensus 133 ~----~~~~~~~~~~~e~rv~~~L~~~~~~e~~~ 162 (539)
+ +.++=..-.. ......+.|+.++.++.
T Consensus 128 ~~~~~l~~~~~~~d~--~~A~~~~~~Lky~~kl~ 159 (171)
T PRK05014 128 TRLQQMVEQLDNEAW--DAAADTVRKLKFLDKLR 159 (171)
T ss_pred HHHHHHHHHHhhCCH--HHHHHHHHHHHHHHHHH
Confidence 3 3332211111 23445566666665443
No 145
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.23 E-value=2.9e+02 Score=27.25 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|+++++.|.+.|.++.....+...|..........+
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~ 87 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKF 87 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999888887776
No 146
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.83 E-value=1.8e+02 Score=25.83 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=23.8
Q ss_pred HHHHHHHHHH----HHHHHHhhhHHHHHHHhhhhHHH
Q 009233 126 ELAELQEDLA----QAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 126 ~~~~~~~~~~----~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
||..|++.+. ...++.+.++.++..||.++++.
T Consensus 62 eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 62 ELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444 66778888889999999988875
No 147
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.56 E-value=3e+02 Score=27.04 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|+++++.|++.|.++.....+...|..........+
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~ 87 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888999999999999999999888888876
No 148
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.36 E-value=92 Score=36.27 Aligned_cols=34 Identities=24% Similarity=0.532 Sum_probs=26.2
Q ss_pred ccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCc
Q 009233 257 NTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 291 (539)
Q Consensus 257 n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c 291 (539)
-.|||.+.+|..-+ ..+.+.|.|.|++....-.|
T Consensus 391 ~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~~~~C 424 (679)
T PRK05580 391 AECPHCDASLTLHR-FQRRLRCHHCGYQEPIPKAC 424 (679)
T ss_pred cCCCCCCCceeEEC-CCCeEECCCCcCCCCCCCCC
Confidence 46999998887654 45789999999998755444
No 149
>COG5570 Uncharacterized small protein [Function unknown]
Probab=20.25 E-value=1.5e+02 Score=23.19 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=33.4
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009233 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (539)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456788888888888888899998888888888877666554
No 150
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.01 E-value=79 Score=30.47 Aligned_cols=22 Identities=14% Similarity=0.460 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQV 141 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~ 141 (539)
...+++|++.|.+|+.++....
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654443
Done!