Query 009233
Match_columns 539
No_of_seqs 327 out of 2175
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:51:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009233.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009233hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 1.1E-51 3.9E-56 431.1 23.9 301 211-523 2-335 (349)
2 2zyl_A Possible oxidoreductase 100.0 1.5E-42 5.3E-47 366.7 24.8 301 211-526 19-340 (386)
3 2de6_A Terminal oxygenase comp 100.0 3.3E-42 1.1E-46 364.6 21.5 300 209-527 20-377 (392)
4 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3.3E-41 1.1E-45 362.6 28.5 307 213-537 39-421 (446)
5 3n0q_A Putative aromatic-ring 100.0 5.6E-41 1.9E-45 357.0 26.8 310 177-524 18-399 (409)
6 3vca_A Ring-hydroxylating diox 100.0 9.7E-41 3.3E-45 355.4 25.0 307 177-521 20-398 (412)
7 3gkq_A Terminal oxygenase comp 100.0 6.7E-38 2.3E-42 328.6 23.1 299 209-525 23-376 (389)
8 3gcf_A Terminal oxygenase comp 100.0 1.1E-37 3.9E-42 327.6 24.6 300 209-527 26-381 (394)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 2.8E-35 9.6E-40 317.1 19.8 179 177-374 14-217 (454)
10 2bmo_A Oxygenase-alpha NBDO; n 100.0 1.3E-35 4.3E-40 319.2 16.2 180 177-375 12-217 (447)
11 2b1x_A Naphthalene dioxygenase 100.0 7.8E-35 2.7E-39 315.0 19.1 180 176-374 21-226 (470)
12 3gzx_A Biphenyl dioxygenase su 100.0 1.3E-34 4.3E-39 311.9 12.6 181 176-375 33-245 (457)
13 1uli_A Biphenyl dioxygenase la 100.0 3.5E-32 1.2E-36 293.6 10.0 178 177-373 32-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 1.3E-26 4.6E-31 200.5 12.2 101 216-321 2-103 (103)
15 1fqt_A Rieske-type ferredoxin 99.9 3.3E-26 1.1E-30 201.2 13.4 103 216-323 4-108 (112)
16 2i7f_A Ferredoxin component of 99.9 9.6E-27 3.3E-31 203.2 9.8 102 217-323 3-106 (108)
17 1vm9_A Toluene-4-monooxygenase 99.9 2.5E-26 8.6E-31 201.5 12.1 104 217-325 1-106 (111)
18 2de6_D Ferredoxin component of 99.9 1.2E-26 4E-31 205.3 9.6 104 215-323 2-107 (115)
19 3dqy_A Toluene 1,2-dioxygenase 99.9 2.2E-26 7.6E-31 200.2 9.2 101 217-322 1-102 (106)
20 2jo6_A Nitrite reductase [NAD( 99.9 1.3E-25 4.4E-30 197.6 11.2 100 217-321 6-112 (113)
21 3gce_A Ferredoxin component of 99.9 1.8E-25 6E-30 199.6 12.1 102 217-323 10-114 (121)
22 3c0d_A Putative nitrite reduct 99.9 9.3E-26 3.2E-30 200.7 10.2 103 216-323 4-112 (119)
23 2jza_A Nitrite reductase [NAD( 99.9 3.9E-25 1.3E-29 199.8 13.3 104 217-325 3-113 (130)
24 4aiv_A Probable nitrite reduct 99.9 4.5E-25 1.5E-29 196.7 9.3 102 215-321 7-116 (119)
25 3d89_A Rieske domain-containin 99.9 1.9E-25 6.3E-30 208.0 6.5 110 214-324 13-137 (157)
26 4aay_B AROB; oxidoreductase, r 99.9 9.9E-23 3.4E-27 193.0 8.7 145 154-319 3-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.8 3.2E-21 1.1E-25 174.0 11.0 97 217-318 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 4.5E-21 1.5E-25 175.3 6.5 101 216-321 20-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 1.7E-20 6E-25 170.1 9.7 98 217-319 7-119 (133)
30 3azc_A Cytochrome B6-F complex 99.7 9.8E-21 3.4E-25 171.7 0.0 97 222-323 21-121 (133)
31 3cx5_E Cytochrome B-C1 complex 99.8 3.3E-18 1.1E-22 163.5 11.9 99 215-318 60-184 (185)
32 2qjy_C Ubiquinol-cytochrome C 99.7 7.3E-18 2.5E-22 161.3 12.6 96 218-318 49-186 (187)
33 1pp9_E Ubiquinol-cytochrome C 99.7 4.4E-18 1.5E-22 163.9 10.7 94 221-318 75-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.7 6.3E-18 2.2E-22 154.8 10.7 93 222-318 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 5.6E-18 1.9E-22 159.0 8.2 98 223-325 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 5.8E-18 2E-22 160.9 3.9 92 224-320 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 6.8E-17 2.3E-21 156.5 0.5 85 233-321 56-167 (204)
38 3pp5_A BRK1, protein brick1; t 78.8 4.8 0.00016 32.2 6.2 57 88-150 14-70 (73)
39 3p8c_E Probable protein brick1 72.6 5 0.00017 32.2 4.8 57 88-150 14-70 (75)
40 3bvo_A CO-chaperone protein HS 66.3 13 0.00045 35.3 7.3 60 70-134 92-167 (207)
41 1fpo_A HSC20, chaperone protei 64.5 13 0.00045 34.1 6.7 64 69-134 49-128 (171)
42 3uo3_A J-type CO-chaperone JAC 56.5 44 0.0015 30.9 8.9 44 67-110 54-118 (181)
43 3hho_A CO-chaperone protein HS 44.8 57 0.0019 29.8 7.5 90 69-162 52-162 (174)
44 2jee_A YIIU; FTSZ, septum, coi 42.9 65 0.0022 26.2 6.5 56 100-155 9-78 (81)
45 2z5i_A TM, general control pro 42.5 29 0.00099 25.7 4.1 38 119-156 13-50 (52)
46 3caz_A BAR protein; thermo-aci 40.3 6.4 0.00022 37.0 0.2 72 51-141 62-136 (294)
47 2l5g_A GPS2 protein, G protein 36.1 32 0.0011 23.8 3.1 29 114-142 4-32 (38)
48 2yy0_A C-MYC-binding protein; 35.6 36 0.0012 25.3 3.7 29 120-148 21-49 (53)
49 3twe_A Alpha4H; unknown functi 34.6 47 0.0016 20.7 3.4 21 121-141 4-24 (27)
50 4i0x_B ESAT-6-like protein MAB 33.8 1.1E+02 0.0038 24.9 7.0 38 120-157 34-81 (103)
51 1uli_A Biphenyl dioxygenase la 33.7 39 0.0013 35.6 5.1 56 438-497 329-391 (460)
52 3j21_W 50S ribosomal protein L 33.4 94 0.0032 24.5 6.0 46 118-163 9-59 (72)
53 3mq9_A Bone marrow stromal ant 32.7 1E+02 0.0034 32.1 8.1 60 101-160 377-450 (471)
54 4emc_A Monopolin complex subun 29.2 85 0.0029 29.4 5.8 57 101-157 17-73 (190)
55 3azd_A Short alpha-tropomyosin 28.0 26 0.00088 24.2 1.6 25 119-143 5-29 (37)
56 3viq_B Mating-type switching p 27.7 1.4E+02 0.0047 24.5 6.2 42 120-161 10-53 (85)
57 3j20_Y 30S ribosomal protein S 27.4 35 0.0012 25.0 2.4 37 248-285 11-47 (50)
58 1d7m_A Cortexillin I; coiled-c 26.7 2.4E+02 0.0083 23.2 7.4 60 104-164 4-70 (101)
59 3g80_A Protein B2; RNA-binding 26.2 1.3E+02 0.0045 24.7 5.7 41 99-142 37-77 (97)
60 2rjz_A PILO protein; structura 26.1 93 0.0032 27.6 5.5 43 114-157 11-53 (147)
61 2wuj_A Septum site-determining 25.4 39 0.0013 25.3 2.4 33 105-140 24-56 (57)
62 4ani_A Protein GRPE; chaperone 25.3 1.4E+02 0.0049 28.4 6.8 39 120-158 68-106 (213)
63 2r2v_A GCN4 leucine zipper; co 24.9 73 0.0025 21.6 3.3 25 101-132 5-29 (34)
64 3uul_A Utrophin; spectrin repe 24.2 1.8E+02 0.006 23.5 6.6 55 100-154 52-114 (118)
65 3hnw_A Uncharacterized protein 24.0 2.4E+02 0.0083 24.8 7.7 40 120-159 91-130 (138)
66 2akf_A Coronin-1A; coiled coil 23.4 1.4E+02 0.0048 19.5 4.3 27 121-147 2-28 (32)
67 1ic2_A Tropomyosin alpha chain 23.0 1.1E+02 0.0038 24.3 4.8 31 120-150 43-73 (81)
68 3v2d_2 50S ribosomal protein L 22.3 2.3E+02 0.0077 22.2 6.4 27 118-144 16-42 (72)
69 3hnw_A Uncharacterized protein 22.2 1.2E+02 0.0042 26.7 5.4 10 33-42 17-26 (138)
70 4a17_U RPL35, 60S ribosomal pr 21.9 2.1E+02 0.007 25.0 6.6 27 118-144 13-39 (124)
71 1vq8_V 50S ribosomal protein L 21.9 2.5E+02 0.0085 21.9 6.6 26 118-143 12-37 (71)
72 3a7o_A Autophagy protein 16; c 21.6 2E+02 0.0067 22.7 5.7 29 121-149 14-42 (75)
73 3u59_A Tropomyosin beta chain; 21.5 2.4E+02 0.0083 23.2 6.9 30 120-149 46-75 (101)
74 1pft_A TFIIB, PFTFIIBN; N-term 21.2 41 0.0014 24.1 1.7 28 258-286 7-35 (50)
75 2a26_A Calcyclin-binding prote 21.0 73 0.0025 23.4 3.0 32 117-154 3-34 (50)
76 3uun_A Dystrophin; triple heli 20.4 2.7E+02 0.0092 22.3 7.0 55 100-154 52-114 (119)
77 3mq7_A Bone marrow stromal ant 20.2 1.3E+02 0.0044 26.0 4.8 41 107-149 55-95 (121)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=1.1e-51 Score=431.10 Aligned_cols=301 Identities=24% Similarity=0.444 Sum_probs=233.9
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009233 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (539)
Q Consensus 211 ~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~ 290 (539)
...+++.|++||+++|| +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 45678999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCC-cc--cccccccccceEEecCeEEEcCCCCC-CC-CCCCCCC--CCCCceeeeEEEEEeecchhhHhhhcCCCC
Q 009233 291 CEKMPS-TQ--LRNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 363 (539)
Q Consensus 291 c~~~P~-~~--~~~~~L~~~pv~e~~G~IwV~l~~~~-p~-~~lp~~~--~~~~~~~~~~~~~~~~~nwk~~vEN~lD~~ 363 (539)
|+.+|+ .. ....+|++|||++++|+||||+++++ +. ..+|++. +.+++... ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 22 13578999999999999999998764 21 1245442 23466654 456789999999999999999
Q ss_pred CCCCcCccccccCCC--CCceeeeecCCCCC-----------Ccccc------CCC----ceeEEcCceeEEEEeeecCC
Q 009233 364 HAPFTHTSTFAKGWS--VPSLVKFLTPASGL-----------QGYWD------PYP----IDMEFRPPCMVLSTIGISKP 420 (539)
Q Consensus 364 H~~~vH~~t~~~~~~--vp~~v~~~~p~~~~-----------~g~~~------~~~----~~~~f~~P~~vl~~~~~~~p 420 (539)
|++|+|+++++.... ++..++. .+ .++ ..+|. ..+ ..++|.+|+++...+++..+
T Consensus 160 H~~~~H~~~~~~~~~~~~~~~v~~-~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~~~~~~~~~~ 237 (349)
T 3gke_A 160 HAQYVHRANAQTDAFDRLEREVIV-GD-GEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAMLNFIAVAPE 237 (349)
T ss_dssp GHHHHTHHHHCCTTGGGCEEEEEE-CS-SEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEEEEEEEEEET
T ss_pred cchhccchhhcCccccCCCCEEEE-cC-CEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEEEEEEecccC
Confidence 999999999986542 2221111 00 000 00110 001 35788899998777776555
Q ss_pred CCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHHHHHH-hhhHHHHHHHhhhccCCC
Q 009233 421 GKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFAEQVL-NEDLRLVLGQQERMNNGA 499 (539)
Q Consensus 421 g~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~~~~V~-~ED~~IlE~qQ~~l~~g~ 499 (539)
|.. .....++..++.++|+++++||++|.+++||..++ +.+...+..+...|| .||+.|||+||+++.+.+
T Consensus 238 g~p-----~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~~d---~~~~~~~~~~~~~if~~ED~~ile~Qq~~l~~~~ 309 (349)
T 3gke_A 238 GTP-----KEQSIHSRGTHILTPETEASCHYFFGSSRNFGIDD---PEMDGVLRSWQAQALVKEDKVVVEAIERRRAYVE 309 (349)
T ss_dssp TSC-----GGGSEEEEEEEEEEEEETTEEEEEEEEEESSSTTC---HHHHHHHHHHHHHHTTTHHHHHHHHHHHTHHHHH
T ss_pred CCC-----CCCceEEEEEEEEecCCCCeEEEEEEEEecCccCc---hhhhHHHHHHHhhhhhhhhHHHHHHHHHHhhcCC
Confidence 531 11234567788999999999999999999987543 333455667888999 999999999999987632
Q ss_pred --CCCCCcccCChHHHHHHHHHHHHH
Q 009233 500 --NVWNLPVGYDKLGVRYRLWRDALE 523 (539)
Q Consensus 500 --~~~el~~~aD~~~v~yRrwl~~l~ 523 (539)
...++++++|+++++||||++++.
T Consensus 310 ~~~~~~~~~~~D~~~v~~Rr~l~~l~ 335 (349)
T 3gke_A 310 ANGIRPAMLSCDEAAVRVSREIEKLE 335 (349)
T ss_dssp HTTCCCCCCGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHH
Confidence 223589999999999999998763
No 2
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-42 Score=366.68 Aligned_cols=301 Identities=16% Similarity=0.280 Sum_probs=212.3
Q ss_pred cccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCC
Q 009233 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (539)
Q Consensus 211 ~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~ 290 (539)
+..+.+.|++||++++|++|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 19 ~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G~ 98 (386)
T 2zyl_A 19 PTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDGR 98 (386)
T ss_dssp CSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTSB
T ss_pred chhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCCC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccc--ccccccccceEEecCeEEEcCCCCC-CC---CCCCCCCC--CCCceeeeEEEEEee-cchhhHhhhcCC
Q 009233 291 CEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLLD 361 (539)
Q Consensus 291 c~~~P~~~~--~~~~L~~~pv~e~~G~IwV~l~~~~-p~---~~lp~~~~--~~~~~~~~~~~~~~~-~nwk~~vEN~lD 361 (539)
|+.+|+... ...++++|||.+++|+||||++++. |+ ..+|++.. ..++.......++++ ||||+++||++|
T Consensus 99 ~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D 178 (386)
T 2zyl_A 99 CKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVTD 178 (386)
T ss_dssp EEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGGC
T ss_pred ccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhccc
Confidence 999998542 2468999999999999999997542 21 12343321 234544344567889 999999999999
Q ss_pred CCCCCCcCccccccC---CCCCceeeee--cCCCCCC--c-cccC--CCceeEEcCceeEEEEeeecCCCCcCCCCcccc
Q 009233 362 LAHAPFTHTSTFAKG---WSVPSLVKFL--TPASGLQ--G-YWDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQC 431 (539)
Q Consensus 362 ~~H~~~vH~~t~~~~---~~vp~~v~~~--~p~~~~~--g-~~~~--~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~ 431 (539)
+||++|+|+++...- ........+. .+..... + .+.. ......|..|+++...+....++.
T Consensus 179 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~~~g~--------- 249 (386)
T 2zyl_A 179 MAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNRYGNY--------- 249 (386)
T ss_dssp STHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEEETTE---------
T ss_pred ccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeeccCCc---------
Confidence 999999999764210 0000000110 0000000 0 0000 012345677887665544332221
Q ss_pred ceeeEEEEEEecCCCCeEEEEEEeeccchhhcc--CchhHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCCCCCCcccCC
Q 009233 432 ATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK--HVPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWNLPVGYD 509 (539)
Q Consensus 432 ~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~--~~p~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g~~~~el~~~aD 509 (539)
......++.++|+++++|++++.+++++.+... ....+...+..+...++.||+.|+|.||+... .++...|
T Consensus 250 ~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~ED~~I~e~q~~~~~------p~~~~~D 323 (386)
T 2zyl_A 250 KSESILINCHYPVTQNSFVLQWGVIVEKPKGMSEEMTDKLSRVFTEGVSKGFLQDVEIWKHKTRIDN------PLLVEED 323 (386)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEEEEBCCCCCC--CTHHHHHHHHHHHHHHHHHHHHHHTTCCCCSS------CCCCGGG
T ss_pred ceeEEEEEEEEEccCCEEEEEEEEEEecCCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHhcccccC------CccCccc
Confidence 012234566799999999999988765432111 11222233445678899999999999875422 2566789
Q ss_pred hHHHHHHHHHHHHHcCC
Q 009233 510 KLGVRYRLWRDALEKGA 526 (539)
Q Consensus 510 ~~~v~yRrwl~~l~~g~ 526 (539)
+++++||+|++++-...
T Consensus 324 ~~~~~fRrw~~~~~~~~ 340 (386)
T 2zyl_A 324 GAVYQLRRWYEQFYVDV 340 (386)
T ss_dssp CSHHHHHHHHHGGGSCG
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999999998865443
No 3
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=3.3e-42 Score=364.58 Aligned_cols=300 Identities=19% Similarity=0.313 Sum_probs=205.8
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcc--cCCeeeccCCCeeEc
Q 009233 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS 286 (539)
Q Consensus 209 ~~~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v--~~~~l~CPyHGW~Fd 286 (539)
.....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|.+ +++.|+||||||+||
T Consensus 20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~ 98 (392)
T 2de6_A 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR 98 (392)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence 33557899999999999999999999999999999999 499999999999999999999975 468999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCeEEEcCCCCCCCCCCCCCC----CCCCceeeeEEEEEeecchhhHhh
Q 009233 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (539)
Q Consensus 287 ~-~G~c~~~P~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~----~~~~~~~~~~~~~~~~~nwk~~vE 357 (539)
+ +|+|+.+|+.+. ...+|++|||.+++|+|||+++++.++ ++++.+ ...++... ...++++||||+++|
T Consensus 99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~-~l~~~l~~~~~~~~~~~~-~~~~~~~~nwk~~~E 176 (392)
T 2de6_A 99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPP-PLARDTPPNFLDDDMEIL-GKNQIIKSNWRLAVE 176 (392)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCC-CGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCC-ChhHhccccccCCCeEEE-EEEEEEecChHhhhH
Confidence 7 999999976432 357899999999999999999764322 232221 12456543 346789999999999
Q ss_pred hcCCCCCCCCcCccccccCC-C--CCc---------eeeeecCCCC--CCcc---ccC----------------------
Q 009233 358 NLLDLAHAPFTHTSTFAKGW-S--VPS---------LVKFLTPASG--LQGY---WDP---------------------- 398 (539)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~~-~--vp~---------~v~~~~p~~~--~~g~---~~~---------------------- 398 (539)
|++|+||+ |+|.++++... . .+. ...+...... ..++ +..
T Consensus 177 N~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~g~ 255 (392)
T 2de6_A 177 NGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIGGEVVREGAYGE 255 (392)
T ss_dssp HHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEETTEEEEECEECS
T ss_pred hcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccccceeeccccCC
Confidence 99999999 99998875311 0 000 0000000000 0000 000
Q ss_pred --CCceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCch-hHHH---H
Q 009233 399 --YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVP-FMQY---L 472 (539)
Q Consensus 399 --~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p-~~~~---~ 472 (539)
.+....+..|+.+... ..|+ ..+.++..++|+++++|++++.+++++.+. .... +... .
T Consensus 256 ~~~~~~~~~~~P~~~~~~---~~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~ 320 (392)
T 2de6_A 256 KIVANDISIWLPGVLKVN---PFPN-----------PDMMQFEWYVPIDENTHYYFQTLGKPCAND-EERKKYEQEFESK 320 (392)
T ss_dssp BCCCCEEEEETTTEEEEE---SCSS-----------TTCEEEEEEEEEETTEEEEEEEEEEECSSH-HHHHHHHHHHHHT
T ss_pred cccceeEEEecccceecc---ccCC-----------CCEEEEEEEeecCCCcEEEEEEEecCCCCH-HHHHHHHHHHHHH
Confidence 0112233345443211 0111 012345668999999999888776654321 1111 1111 1
Q ss_pred HHHH-HHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHHcCCC
Q 009233 473 WRHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK 527 (539)
Q Consensus 473 ~~~~-~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~~g~~ 527 (539)
|+.. ...|+.||+.|+|+||+.+..+.. ..+++.++|+++++||||++++..+..
T Consensus 321 ~~~~~~~~~~~qD~~i~e~qq~~~~~~~~~~~e~~~~~D~~~~~~Rr~l~~~~~~~~ 377 (392)
T 2de6_A 321 WKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIVAWRKLASEHNQGIQ 377 (392)
T ss_dssp HHHHTTTTTTHHHHHHHHHTHHHHHTSTHHHHCCCCGGGHHHHHHHHHHHHHCSCBC
T ss_pred HHHhhccCCChhhHHHHHhhhhhhhccccCccceecchhHHHHHHHHHHHHHhhhhc
Confidence 1111 134678999999999998876543 346788999999999999999876543
No 4
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3.3e-41 Score=362.65 Aligned_cols=307 Identities=17% Similarity=0.279 Sum_probs=206.7
Q ss_pred cccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCc--ccCCeeeccCCCeeEcC-CC
Q 009233 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 289 (539)
Q Consensus 213 ~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~--v~~~~l~CPyHGW~Fd~-~G 289 (539)
.+++.|++||++++|++|++++++++|++|+|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||+ +|
T Consensus 39 if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~G 117 (446)
T 1z01_A 39 GFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLETG 117 (446)
T ss_dssp CBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTTC
T ss_pred hhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCCC
Confidence 3578999999999999999999999999999999 79999999999999999999997 46789999999999997 99
Q ss_pred CccccCCccc----ccccccccceEEecCeEEEcCCCCC----CCCCCCCCCC----------------------CCCce
Q 009233 290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLLP----------------------PSGFE 339 (539)
Q Consensus 290 ~c~~~P~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~----p~~~lp~~~~----------------------~~~~~ 339 (539)
+|+.+|+.+. ...+|++|||.+++|+||||++++. .++++++.++ ..++.
T Consensus 118 ~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (446)
T 1z01_A 118 KLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNAV 197 (446)
T ss_dssp BEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCTTTTTTTSCCTTSCCCCCTTSTTEE
T ss_pred CccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchhhhhhhccccccccccccccCCCeE
Confidence 9999976431 2478999999999999999997642 1112221111 13444
Q ss_pred eeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccC---CCCCcee--------eeecCCCCCCcc------------c
Q 009233 340 IHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGY------------W 396 (539)
Q Consensus 340 ~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~---~~vp~~v--------~~~~p~~~~~g~------------~ 396 (539)
.. ...++++||||+++||++|+||+ ++|+++++.. ...+... ..+....+..+. +
T Consensus 198 ~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 275 (446)
T 1z01_A 198 VH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDDDGPKGMMQWLFTDKWAPVL 275 (446)
T ss_dssp EE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCSSSCCEEEECTTSTTEEEEC
T ss_pred EE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEecCCCCEEEEEecCccccchh
Confidence 43 34568999999999999999999 9999887521 1111000 001000000000 0
Q ss_pred c--------C----CCceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhcc
Q 009233 397 D--------P----YPIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLK 464 (539)
Q Consensus 397 ~--------~----~~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~ 464 (539)
. . ....+.+..|++++... .|. ..+..++.++|+++++|++++.++.++... .
T Consensus 276 ~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~---~p~-----------~~~~~~~~~~Pi~~~~t~~~~~~~~~~~~~-e 340 (446)
T 1z01_A 276 ENQELGLKVEGLKGRHYRTSVVLPGVLMVEN---WPE-----------EHVVQYEWYVPITDDTHEYWEILVRVCPTD-E 340 (446)
T ss_dssp EETTTTEECCCCCCCCCEEEEETTTEEEEET---CSS-----------TTCEEEEEEEESSSSEEEEEEEEEEECCSH-H
T ss_pred hhhhhccccccCCceEEEeeeecCceEEEec---cCC-----------CCeEEEEEEEECCCCcEEEEEEEecCCCCH-H
Confidence 0 0 00123344666553321 110 012456778999999999887766654311 1
Q ss_pred CchhHHH----HHHHH-HHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHHcCC--CCCCCCCCCC
Q 009233 465 HVPFMQY----LWRHF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGA--KQLPFMKPMQ 536 (539)
Q Consensus 465 ~~p~~~~----~~~~~-~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~~g~--~~~p~~~~~~ 536 (539)
....+.. .+... ...|+.||+.|+|+||+++..+.. ..+++.++|+++++||+|++++..+. .+.-+.++++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~~~~~~~l~~~D~~i~~~Rr~l~~~~~~~~~~~~~~~~~~~ 420 (446)
T 1z01_A 341 DRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGTGWDDEQLVATDISPITWRKLASRWNRGIAKPGRGVAGAVK 420 (446)
T ss_dssp HHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSCBCCCCCSSTTSSS
T ss_pred HHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhccccccccccCchhhHHHHHHHHHHHHHHhhccCcccccCcccc
Confidence 1110111 11111 134679999999999999876532 34578899999999999999876543 2222455544
Q ss_pred C
Q 009233 537 T 537 (539)
Q Consensus 537 ~ 537 (539)
+
T Consensus 421 ~ 421 (446)
T 1z01_A 421 D 421 (446)
T ss_dssp S
T ss_pred c
Confidence 4
No 5
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=5.6e-41 Score=356.98 Aligned_cols=310 Identities=17% Similarity=0.173 Sum_probs=222.4
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+.+.-+|++.++.|+++++ ++.|++||+++||+ +|++++++++|++|+|+|+.+|+++||
T Consensus 18 ~lp~~~Y~d~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~ 80 (409)
T 3n0q_A 18 ALDQAFYTDAEVFQTDLQEIF-----------------YKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAF 80 (409)
T ss_dssp CCCHHHHHCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHH-----------------hcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEee
Confidence 456667788899999988864 68899999999998 599999999999999999999999999
Q ss_pred eccCCCCCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcc----cccccccccceEEecCeEEEcCCCCCCCCCCC
Q 009233 256 QNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330 (539)
Q Consensus 256 ~n~CpHRGa~Ls~-G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~----~~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp 330 (539)
.|+|||||++|+. |.++++.|+||||||+||.+|+|+.+|+.. ....+|++|||++++|+|||++++++| +++
T Consensus 81 ~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~--~l~ 158 (409)
T 3n0q_A 81 HNACRHRGSVICKAKKGNNPKLVCPYHQWTYELDGRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAP--DFE 158 (409)
T ss_dssp ESCCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred cCcCCcCcCCccCcCccCCCEEEECCCCCEEeCCCCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCC--ChH
Confidence 9999999999996 888899999999999999999999999753 245789999999999999999987654 344
Q ss_pred CCCC----------CCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC---------------------
Q 009233 331 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV--------------------- 379 (539)
Q Consensus 331 ~~~~----------~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v--------------------- 379 (539)
++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 159 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (409)
T 3n0q_A 159 RFAEVARPYLEVHDLSNAKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDR 238 (409)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHH
T ss_pred HhhhhhhhhhccccCCCeEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhh
Confidence 4321 123344445567899999999999999999999999886531100
Q ss_pred ------Cc-ee-----ee---ecCC---------CCCCcc------ccCC--CceeEEcCceeEEEEeeecCCCCcCCCC
Q 009233 380 ------PS-LV-----KF---LTPA---------SGLQGY------WDPY--PIDMEFRPPCMVLSTIGISKPGKLEGQN 427 (539)
Q Consensus 380 ------p~-~v-----~~---~~p~---------~~~~g~------~~~~--~~~~~f~~P~~vl~~~~~~~pg~~~~~~ 427 (539)
+. .. .+ ..+. ++...+ +... .....+..|++.+...
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~------------ 306 (409)
T 3n0q_A 239 CEQAGMPSGFHLSGDGQFRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL------------ 306 (409)
T ss_dssp HHHTTCCCCCEECTTSSEEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC------------
T ss_pred hhccCCcceeecccccceeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC------------
Confidence 00 00 00 0000 000000 0000 0123345677665442
Q ss_pred ccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCc-hhHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCCCCC-Cc
Q 009233 428 TRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHV-PFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWN-LP 505 (539)
Q Consensus 428 ~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~-p~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g~~~~e-l~ 505 (539)
.+...++.+.|+++++|++.+.++... ...+. ..-.+.+..+...|+.||..|+|..|+++.++..... ++
T Consensus 307 -----pd~~~~~~~~P~~p~~t~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~s~~y~~G~~s 379 (409)
T 3n0q_A 307 -----SDHSIVFRVTPISPTETEVTTKWLVHK--DAVEGVDYDLQRLTEVWIATNDEDREVVEFNQMGINSPAYEPGPYS 379 (409)
T ss_dssp -----SSCEEEEEEEEEETTEEEEEEEEEEET--TCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBCC
T ss_pred -----CCEEEEEEEEECCCCeEEEEEEEEEcC--cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC
Confidence 122446678999999999988777532 21111 1111334456688999999999999999998653222 23
Q ss_pred ccCChHHHHHHHHHH-HHHc
Q 009233 506 VGYDKLGVRYRLWRD-ALEK 524 (539)
Q Consensus 506 ~~aD~~~v~yRrwl~-~l~~ 524 (539)
...+.+...|.+|+. ++..
T Consensus 380 ~~~E~~v~~F~~w~~~~l~~ 399 (409)
T 3n0q_A 380 PTQESGVLQFVEWYLSTLKR 399 (409)
T ss_dssp TTTSHHHHHHHHHHHHHHHH
T ss_pred CCccHhHHHHHHHHHHHHHh
Confidence 335899999999965 4543
No 6
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=9.7e-41 Score=355.44 Aligned_cols=307 Identities=17% Similarity=0.178 Sum_probs=219.4
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+.+.-+|++.++.|+++++ ++.|++||+++||+ +|++++++++|++|+|+|+.+|+++||
T Consensus 20 ~lp~~~Y~d~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~ 82 (412)
T 3vca_A 20 SLEQPFYTSPEVYALDLQHIF-----------------YKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAF 82 (412)
T ss_dssp CCCHHHHHCHHHHHHHHHHTT-----------------TTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHHH-----------------hccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEe
Confidence 345566788889988888764 67899999999998 599999999999999999999999999
Q ss_pred eccCCCCCCCCC-CCcccCCeeeccCCCeeEcCCCCccccCCcc----cccccccccceEEecCeEEEcCCCCCCCCCCC
Q 009233 256 QNTCAHRACPLH-LGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIP 330 (539)
Q Consensus 256 ~n~CpHRGa~Ls-~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~----~~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp 330 (539)
.|+|||||++|+ .|.++++.|+||||||+||++|+|+.+|+.. ....+|++|||++++|+|||++++++| +++
T Consensus 83 ~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdldG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p--~l~ 160 (412)
T 3vca_A 83 HNSCRHRGSLICKARQGQVAKLVCPYHQWTYELDGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPP--DFQ 160 (412)
T ss_dssp ESSCTTTCCCSCCSSEEECSSEECTTTCCEECTTSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCC--CCH
T ss_pred cccCCCCCCEeecccccCCCEEEcCCCCCEEcCCCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCC--CHH
Confidence 999999999998 7889999999999999999999999999753 235789999999999999999987654 344
Q ss_pred CCCC----------CCCceeeeEEEEEeecchhhHhhhcCCCCCCCCcCccccccCCCC---------------------
Q 009233 331 CLLP----------PSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV--------------------- 379 (539)
Q Consensus 331 ~~~~----------~~~~~~~~~~~~~~~~nwk~~vEN~lD~~H~~~vH~~t~~~~~~v--------------------- 379 (539)
++++ ...+.+.....++++||||+++||++|+||++++|+++++.-...
T Consensus 161 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 3vca_A 161 TFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFD 240 (412)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHH
T ss_pred HHhhhhHHhhccccCCCeEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhh
Confidence 4321 123344445677899999999999999999999999876521100
Q ss_pred -------Cc-e-----eee---ecCC---------CCCCcc------ccC--CCceeEEcCceeEEEEeeecCCCCcCCC
Q 009233 380 -------PS-L-----VKF---LTPA---------SGLQGY------WDP--YPIDMEFRPPCMVLSTIGISKPGKLEGQ 426 (539)
Q Consensus 380 -------p~-~-----v~~---~~p~---------~~~~g~------~~~--~~~~~~f~~P~~vl~~~~~~~pg~~~~~ 426 (539)
+. . ..+ ..+. ++..++ +.. ......+..|++.+...
T Consensus 241 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~----------- 309 (412)
T 3vca_A 241 RCEAAGTPAQFVLAGDGQYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL----------- 309 (412)
T ss_dssp HHHHTTCCCSCEECTTSSEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC-----------
T ss_pred hhhccCCcccccccccCceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC-----------
Confidence 00 0 000 0000 000000 000 00123345677665442
Q ss_pred CccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccC-chhHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCCCCC-C
Q 009233 427 NTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKH-VPFMQYLWRHFAEQVLNEDLRLVLGQQERMNNGANVWN-L 504 (539)
Q Consensus 427 ~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~-~p~~~~~~~~~~~~V~~ED~~IlE~qQ~~l~~g~~~~e-l 504 (539)
.+...++.+.|+++++|++.+.++... ...+ ...-.+.+..+...|+.||..|+|..|+|+.++..... +
T Consensus 310 ------pd~~~~~~~~P~~~~~t~v~~~~~~~~--d~~~~~d~~~~~~~~~~~~~~~ED~~l~e~~Q~G~~S~~y~~G~~ 381 (412)
T 3vca_A 310 ------PDHSLTFRVMPISPTETEVTTTWLVHK--DAVEGVDYDLKRLTEVWIATNDEDREIVETNQQGILSPAYVPGPY 381 (412)
T ss_dssp ------SSCEEEEEEEEEETTEEEEEEEEEEET--TCCBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCBC
T ss_pred ------CCEEEEEEEEECCCCeEEEEEEEEEcc--ccccCccHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCC
Confidence 122446678999999999988777532 2111 11111334456778999999999999999998653221 2
Q ss_pred cccCChHHHHHHHHHHH
Q 009233 505 PVGYDKLGVRYRLWRDA 521 (539)
Q Consensus 505 ~~~aD~~~v~yRrwl~~ 521 (539)
+-..+.+...|.+|+.+
T Consensus 382 sp~~E~~v~~F~~w~~~ 398 (412)
T 3vca_A 382 SPGQESGVMQFVDWYAA 398 (412)
T ss_dssp CTTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHH
Confidence 22348899999999653
No 7
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=6.7e-38 Score=328.61 Aligned_cols=299 Identities=19% Similarity=0.361 Sum_probs=211.0
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCc--ccCCeeeccCCCeeEc
Q 009233 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (539)
Q Consensus 209 ~~~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~--v~~~~l~CPyHGW~Fd 286 (539)
.....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 34457799999999999999999999999999999999 79999999999999999999986 5688999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCeEEEcCCCCCCCCCCCCCCC----CCCceeeeEEEEEeecchhhHhh
Q 009233 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (539)
Q Consensus 287 ~-~G~c~~~P~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~vE 357 (539)
+ +|+|+.+|+.+. ...+|++|||++++|+|||+++++++ +++++.++ ..++... ...++++||||+++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~l~~~~~~~~~~~~-~~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEP-HDLAEDVPPGFLDADLAVH-GQHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCC-CCchhhcchhccCCceEEE-eEEEEEecCchhhHH
Confidence 7 999999987542 35789999999999999999975432 22333222 2455543 346789999999999
Q ss_pred hcCCCCCCCCcCccccccC---CCCCc---------eeeeecCCCCCCccccCCC-------------------------
Q 009233 358 NLLDLAHAPFTHTSTFAKG---WSVPS---------LVKFLTPASGLQGYWDPYP------------------------- 400 (539)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~---~~vp~---------~v~~~~p~~~~~g~~~~~~------------------------- 400 (539)
|++|+||+ ++|+++++.. ...+. ......+...+.|.++.+.
T Consensus 180 N~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQPAIQGHMGSKM 258 (389)
T ss_dssp HHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEEEEECBCCSBC
T ss_pred hcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcccccCCCCCcc
Confidence 99999999 9999988631 11111 1112222233344332211
Q ss_pred --ceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchh---HHHHHHH
Q 009233 401 --IDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWRH 475 (539)
Q Consensus 401 --~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~---~~~~~~~ 475 (539)
....+..|++.... .+.. .+++++-..+|+++++++|+-.+...+....+...+ ++..|+.
T Consensus 259 ~~~~~s~~lP~v~~v~-~~~~-------------~~~~~~~~~vpi~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (389)
T 3gkq_A 259 VAISISVWLPGVLKVD-PFPD-------------PTLTQFEWYVPIDEGHHLYLQMLGRRVGSEEEARSFEAEFREKWVE 324 (389)
T ss_dssp CCCEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEEEETTEEEEEEEEEEECSSHHHHHHHHHHHHHTHHH
T ss_pred cceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 12333344433221 1111 135666667999999999987776544332221111 1222332
Q ss_pred H-HHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHHcC
Q 009233 476 F-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKG 525 (539)
Q Consensus 476 ~-~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~~g 525 (539)
. ...++++|+..-|+.|+=...+.. ..|.....|..+|++||...+..+|
T Consensus 325 ~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 325 LALNGFNDDDILARRSMEPFYADDRGWREEVLFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp HTTTTTTHHHHHHHHHHHHHHHTSHHHHHCCCCGGGHHHHHHHHHHHHHCSC
T ss_pred HhhccccchhHHHHHHHHHhhccCCCCChhhccCcchhHHHHHHHHHHhccc
Confidence 2 356788999999999987765321 1257788999999999998887765
No 8
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=1.1e-37 Score=327.62 Aligned_cols=300 Identities=20% Similarity=0.327 Sum_probs=210.0
Q ss_pred CccccccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCc--ccCCeeeccCCCeeEc
Q 009233 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (539)
Q Consensus 209 ~~~~~~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~--v~~~~l~CPyHGW~Fd 286 (539)
.....+++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 104 (394)
T 3gcf_A 26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD 104 (394)
T ss_dssp HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence 34467899999999999999999999999999999999 79999999999999999999986 4678999999999999
Q ss_pred C-CCCccccCCccc----ccccccccceEEecCeEEEcCCCCCCCCCCCCCCC----CCCceeeeEEEEEeecchhhHhh
Q 009233 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----PSGFEIHAEIVMELPIEHGLLLD 357 (539)
Q Consensus 287 ~-~G~c~~~P~~~~----~~~~L~~~pv~e~~G~IwV~l~~~~p~~~lp~~~~----~~~~~~~~~~~~~~~~nwk~~vE 357 (539)
+ +|+|+.+|+.+. ...+|++|||++++|+|||+++++.+ +++++.++ ..++... ...++++||||+++|
T Consensus 105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~-~~~~~i~~NWK~~~E 182 (394)
T 3gcf_A 105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLL-GIRRTVQSNWRLGVE 182 (394)
T ss_dssp TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEE-eEEEEEecCchhhHh
Confidence 8 899999987542 35789999999999999999976432 23333222 2345543 346789999999999
Q ss_pred hcCCCCCCCCcCccccccC---CCCCcee--------eeecCCCCCCccccCC---------------------------
Q 009233 358 NLLDLAHAPFTHTSTFAKG---WSVPSLV--------KFLTPASGLQGYWDPY--------------------------- 399 (539)
Q Consensus 358 N~lD~~H~~~vH~~t~~~~---~~vp~~v--------~~~~p~~~~~g~~~~~--------------------------- 399 (539)
|++|+||+ |+|+++++.. ...+..+ ... +.....|.++.+
T Consensus 183 N~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kg~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~ 260 (394)
T 3gcf_A 183 NGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVY-DENWPKGVLDRLSENYMPVFEATLDGETVLSAELTGEEK 260 (394)
T ss_dssp HHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEE-CSSSSCEEEECHHHHEEEECEEEETTEEEEECCCCSSCB
T ss_pred hccccchh-hCchhhhcccccccccCcceeEcCCceEEec-cCCCCcchhhhhhccccccccccccccccccccccCccc
Confidence 99999999 9999988642 1111110 011 111222221110
Q ss_pred --CceeEEcCceeEEEEeeecCCCCcCCCCccccceeeEEEEEEecCCCCeEEEEEEeeccchhhccCchh---HHHHHH
Q 009233 400 --PIDMEFRPPCMVLSTIGISKPGKLEGQNTRQCATHLHQLHVCLPSSRKKTRLLYRMSLDFASVLKHVPF---MQYLWR 474 (539)
Q Consensus 400 --~~~~~f~~P~~vl~~~~~~~pg~~~~~~~~~~~~~l~~l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~---~~~~~~ 474 (539)
+....+..|++.... .+.. .+++++-..+|+++++++++..+...+....+...+ ++..|+
T Consensus 261 ~~~~~~s~~lP~v~~v~-~~p~-------------~~~~~~~~~vPid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (394)
T 3gcf_A 261 KVAAQVSVWLPGVLKVD-PFPD-------------PTLIQYEFYVPISETQHEYFQVLQRKVEGPEDVKTFEVEFEERWR 326 (394)
T ss_dssp CCCSEEEEETTTEEEEE-SCSS-------------TTCEEEEEEEESSSSCEEEEEEEEEECSSHHHHHHHHHHHHHTHH
T ss_pred ccceeEEEEecCeeEec-cCCC-------------CCeEEEEEEeeccCCeEEEEEEEEEECCCHHHHHHHHHHHHHHhH
Confidence 112233334333211 1111 135666667999999999997666544332221111 122232
Q ss_pred HH-HHHHHhhhHHHHHHHhhhccCCCC-CCCCcccCChHHHHHHHHHHHHHcCCC
Q 009233 475 HF-AEQVLNEDLRLVLGQQERMNNGAN-VWNLPVGYDKLGVRYRLWRDALEKGAK 527 (539)
Q Consensus 475 ~~-~~~V~~ED~~IlE~qQ~~l~~g~~-~~el~~~aD~~~v~yRrwl~~l~~g~~ 527 (539)
.. ...++++|+..-|+.|+=...+.. ..|.....|..++++||...+..+|-.
T Consensus 327 ~~~~~~f~~~d~~ar~~~~~~y~~~~g~~~e~l~~~d~~~~~~r~~~~~~~~~~~ 381 (394)
T 3gcf_A 327 DDALHGFNDDDVWAREAQQEFYGERDGWSKEQLFPPDMCIVKWRTLASERGRGVR 381 (394)
T ss_dssp HHTTTTTTHHHHHHHHHHHHHHHHSCHHHHCCCCGGGHHHHHHHHHHHHHCSEEC
T ss_pred HHhhcccchhhHHHHHHHHHhhcccCCCChhhccCcchhHHHHHHHHHHhcccCC
Confidence 22 356788999999999987665321 125778899999999999998877643
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=2.8e-35 Score=317.12 Aligned_cols=179 Identities=18% Similarity=0.305 Sum_probs=151.4
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+.+..+|++.++.|+++++ .+.|++||+++||+ +|+++.+.++|++|+|+|+.+|+++||
T Consensus 14 ~~~~~~y~~~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~ 76 (454)
T 2gbw_A 14 SQSRQVFWDEDVYALEIERIF-----------------SRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAF 76 (454)
T ss_dssp EEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred ccCHHHcCCHHHHHHHHHHHh-----------------hcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence 567778899999999988864 57899999999998 599999999999999999999999999
Q ss_pred eccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCccc--------ccccccccceEEecCeEEEcCCCCCCC
Q 009233 256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (539)
Q Consensus 256 ~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P~~~~--------~~~~L~~~pv~e~~G~IwV~l~~~~p~ 326 (539)
.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|+... ...+|++|||.+++|+|||++++++|
T Consensus 77 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p- 155 (454)
T 2gbw_A 77 INSCSHRGNQICHADSGNAKAFVCNYHGWVFGQDGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAP- 155 (454)
T ss_dssp ESSCTTTCCCSCCCSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCC-
T ss_pred eccCCCCCCCCcccccCCcCEEEeCCCCCEecCCCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCC-
Confidence 9999999999999875 6789999999999999999999997531 24579999999999999999987654
Q ss_pred CCCCCCCC-------------CCCceee-eEEEEEeecchhhHhhhc-CCCCCCCCcCccccc
Q 009233 327 ATIPCLLP-------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 374 (539)
Q Consensus 327 ~~lp~~~~-------------~~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~ 374 (539)
+++++++ +.++.+. ....++++||||+++||+ +|+||++++|..+++
T Consensus 156 -~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 156 -SLEDYLGEFRYYLDTIWEGAGGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp -CHHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred -CHHHHhhhhHHHHHHHHhcCCCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 3444322 1345544 245678999999999999 799999999976664
No 10
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=1.3e-35 Score=319.16 Aligned_cols=180 Identities=19% Similarity=0.291 Sum_probs=151.7
Q ss_pred ccc-CCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009233 177 QTC-ASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (539)
Q Consensus 177 ~~~-~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A 254 (539)
..+ .+..+|++.++.|+++++ .+.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 12 ~~~~~~~y~~~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a 74 (447)
T 2bmo_A 12 LTQKLLIHGDKELFQHELKTIF-----------------ARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRA 74 (447)
T ss_dssp CEEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CCCccceeCCHHHHHHHHHHhh-----------------ccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEE
Confidence 455 777899999999988864 57899999999998 59999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCcc--------cccccccccc-eEEecCeEEEcCCCCC
Q 009233 255 VQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEP 324 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P~~~--------~~~~~L~~~p-v~e~~G~IwV~l~~~~ 324 (539)
|.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|+.. ....+|++|| |.+++|+|||++++++
T Consensus 75 ~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~ 154 (447)
T 2bmo_A 75 FLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEA 154 (447)
T ss_dssp EESBCTTTCCBCCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTC
T ss_pred EeccCcCCCCCccccccCCcCeEECCCCcchhcCCCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCC
Confidence 99999999999999875 578999999999999999999999743 1246899999 9999999999998765
Q ss_pred CCCCCCCCCC------------CCCceee-eEEEEEeecchhhHhhhc-CCCCCCCCcCcccccc
Q 009233 325 PTATIPCLLP------------PSGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAK 375 (539)
Q Consensus 325 p~~~lp~~~~------------~~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~~ 375 (539)
| +++++++ ..++... ....++++||||+++||+ +|+||++++|..+++.
T Consensus 155 ~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~ 217 (447)
T 2bmo_A 155 P--PLIDYLGDAAWYLEPTFKYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALRA 217 (447)
T ss_dssp C--CHHHHHTTHHHHHHHHHTTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHHH
T ss_pred C--CHHHHhccHHHHHHHHhccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhhc
Confidence 4 3444322 2345544 245678999999999999 7999999999876653
No 11
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=7.8e-35 Score=314.97 Aligned_cols=180 Identities=19% Similarity=0.335 Sum_probs=149.6
Q ss_pred ccccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCCC-CCeEEEEECCeeEEEEEcCCCcEEE
Q 009233 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGC 254 (539)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~~-g~~~~~~l~g~~vvl~R~~dG~v~A 254 (539)
...+.+..+|++.++.|+++++ .+.|++||+++||++ |+++.++++|++|+|+|+.+|+++|
T Consensus 21 ~~lp~~~Ytd~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a 83 (470)
T 2b1x_A 21 WTVPAAIINDPEVHDVERERIF-----------------GHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRG 83 (470)
T ss_dssp CEEEGGGSSCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHh-----------------hcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEE
Confidence 3567778899999999988864 678999999999985 8899999999999999999999999
Q ss_pred eeccCCCCCCCCCCCccc-CCeeeccCCCeeEcCCCCccccCCccc--------ccccccccc-eEEecCeEEEcCCCCC
Q 009233 255 VQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSLP-CFEQEGMIWIWPGDEP 324 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~v~-~~~l~CPyHGW~Fd~~G~c~~~P~~~~--------~~~~L~~~p-v~e~~G~IwV~l~~~~ 324 (539)
|.|+|||||++|+.|.+. ++.|+||||||+||.+|+|+.+|+.+. ...+|.++| |.+++|+|||++++++
T Consensus 84 ~~n~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~ 163 (470)
T 2b1x_A 84 HLNACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHA 163 (470)
T ss_dssp EESSCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTC
T ss_pred EecccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCC
Confidence 999999999999998765 479999999999999999999998531 236788885 5557999999998765
Q ss_pred CCCCCCCCCC-------------CCCceeee-EEEEEeecchhhHhhhc-CCCCCCCCcCccccc
Q 009233 325 PTATIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFA 374 (539)
Q Consensus 325 p~~~lp~~~~-------------~~~~~~~~-~~~~~~~~nwk~~vEN~-lD~~H~~~vH~~t~~ 374 (539)
| +++++++ ..++.... ...++++||||+++||+ +|+||++++|+++++
T Consensus 164 ~--~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 164 D--SLEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp C--CHHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred C--CHHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 4 3443322 23455443 45678999999999999 999999999998764
No 12
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=1.3e-34 Score=311.86 Aligned_cols=181 Identities=18% Similarity=0.271 Sum_probs=154.3
Q ss_pred ccccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEE
Q 009233 176 DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGC 254 (539)
Q Consensus 176 ~~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A 254 (539)
...+....+|++.++.|+++++ .+.|++||+++||+ +|++++++++|++|+|+|+.+|+++|
T Consensus 33 ~~~~~~~Ytd~~~~~~E~~~if-----------------~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A 95 (457)
T 3gzx_A 33 GKLDARIYADQDLYQLELERVF-----------------GRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKV 95 (457)
T ss_dssp TEEEGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEE
T ss_pred CcCCHHHcCCHHHHHHHHHHHH-----------------hcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEE
Confidence 3566778999999999998865 68899999999997 58999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCc-ccCCeeeccCCCeeEcCCCCccccCCcc--------------cccccccccceEEecCeEEEc
Q 009233 255 VQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTDGKCEKMPSTQ--------------LRNVKIKSLPCFEQEGMIWIW 319 (539)
Q Consensus 255 ~~n~CpHRGa~Ls~G~-v~~~~l~CPyHGW~Fd~~G~c~~~P~~~--------------~~~~~L~~~pv~e~~G~IwV~ 319 (539)
|.|+|||||++|+.|. ++++.|+||||||+||.+|+|+.+|+.+ ....+|++|||.+++|+||||
T Consensus 96 ~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~ 175 (457)
T 3gzx_A 96 FLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFAN 175 (457)
T ss_dssp EESCCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEE
T ss_pred EeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEe
Confidence 9999999999999986 6788999999999999999999999853 123678999999999999999
Q ss_pred CCCCCCCCCCCCCCCC-------------CCceee-eEEEEEeecchhhHhhhc-CCCCCCC-CcCcccccc
Q 009233 320 PGDEPPTATIPCLLPP-------------SGFEIH-AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAK 375 (539)
Q Consensus 320 l~~~~p~~~lp~~~~~-------------~~~~~~-~~~~~~~~~nwk~~vEN~-lD~~H~~-~vH~~t~~~ 375 (539)
+++++| ++++++++ .++++. ....+.++||||+++||+ +|+||++ ++|.++++.
T Consensus 176 ~~~~ap--~l~e~lg~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~ 245 (457)
T 3gzx_A 176 WDPEAP--DLKTYLSDAMPYMDVMLDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLA 245 (457)
T ss_dssp SCTTSC--CHHHHTTTCHHHHHHHHSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHH
T ss_pred cCCCCC--ChHHHHhhhHHHHHHHhccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhhc
Confidence 987654 34554432 244444 245678999999999999 8999999 999987653
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.97 E-value=3.5e-32 Score=293.56 Aligned_cols=178 Identities=19% Similarity=0.295 Sum_probs=148.2
Q ss_pred cccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCC-CCCeEEEEECCeeEEEEEcCCCcEEEe
Q 009233 177 QTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCV 255 (539)
Q Consensus 177 ~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~-~g~~~~~~l~g~~vvl~R~~dG~v~A~ 255 (539)
..+.+..+|++.++.|+++++ .+.|++||+++||+ +|+++.+.++|++|+|+|+.+|+++||
T Consensus 32 ~~p~~~y~d~~~~~~E~~~if-----------------~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~ 94 (460)
T 1uli_A 32 RLDPRIYTDEALYEQELERIF-----------------GRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVF 94 (460)
T ss_dssp EECGGGGTCHHHHHHHHHHTT-----------------TTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred cCCHHHcCCHHHHHHHHHHhh-----------------hcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEE
Confidence 466667889999999988864 57899999999998 488899999999999999999999999
Q ss_pred eccCCCCCCCCCCCcc-cCCeeeccCCCeeEcCCCCccccCCccc-------ccccccccceEEecCeEEEcCCCCCCCC
Q 009233 256 QNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTA 327 (539)
Q Consensus 256 ~n~CpHRGa~Ls~G~v-~~~~l~CPyHGW~Fd~~G~c~~~P~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~p~~ 327 (539)
.|+|||||++|+.|.. +++.|+||||||+||.+|+|+.+|+... ...+|++|||.+++|+|||++++++|
T Consensus 95 ~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p-- 172 (460)
T 1uli_A 95 LNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTGGNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAP-- 172 (460)
T ss_dssp ESCCTTTCCCSCCSSEEECSCEECTTTCCEECTTCCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSC--
T ss_pred eeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCCCCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCC--
Confidence 9999999999999865 5689999999999999999999997431 23679999999999999999987654
Q ss_pred CCCCCCCC-------------CCcee-eeEEEEEeecchhhHhhhc-CCCCCC-CCcCcccc
Q 009233 328 TIPCLLPP-------------SGFEI-HAEIVMELPIEHGLLLDNL-LDLAHA-PFTHTSTF 373 (539)
Q Consensus 328 ~lp~~~~~-------------~~~~~-~~~~~~~~~~nwk~~vEN~-lD~~H~-~~vH~~t~ 373 (539)
++++++++ .++.+ .....++++||||+++||+ +|+||+ .++|..++
T Consensus 173 ~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 173 DLDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp CHHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred CHHHHhcchHHHHHHHhhcCCCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 23433221 23443 2345678999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=1.3e-26 Score=200.47 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=95.2
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009233 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (539)
Q Consensus 216 ~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~ 294 (539)
..|+++|.++||++|+++.+++.|++++|+| .+|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. ||+|+.+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 3699999999999999999999999999999 7999999999999999999999988999999999999997 9999999
Q ss_pred CCcccccccccccceEEecCeEEEcCC
Q 009233 295 PSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (539)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (539)
|+. .+|++||+++++|.|||+++
T Consensus 81 P~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC
T ss_pred CCC----CCCCEEeEEEECCEEEEEcC
Confidence 873 57999999999999999874
No 15
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=3.3e-26 Score=201.15 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=96.3
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCC-cccCCeeeccCCCeeEcC-CCCccc
Q 009233 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEK 293 (539)
Q Consensus 216 ~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G-~v~~~~l~CPyHGW~Fd~-~G~c~~ 293 (539)
..|++||.++||++|+++.+++.|++|+|+|. +|+++||.|+|||+|++|+.| .++++.|+||||||+||. ||+|+.
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~ 82 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 82 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeC
Confidence 35999999999999999999999999999998 999999999999999999999 888899999999999998 899999
Q ss_pred cCCcccccccccccceEEecCeEEEcCCCC
Q 009233 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 294 ~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
+|+. .+|++||+++++|+|||+++++
T Consensus 83 ~P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 83 PPPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SSCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCCC----CCccEEEEEEECCEEEEEeccc
Confidence 9873 5799999999999999998654
No 16
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=9.6e-27 Score=203.18 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=95.1
Q ss_pred ceEEeeecCCCCCCCeEEEEECCee-EEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~-vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~ 294 (539)
.|++||.++||++|+++.+++.|++ ++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ ||+|+.+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 5999999999999999999999999 999998 999999999999999999999988999999999999996 9999999
Q ss_pred CCcccccccccccceEEecCeEEEcCCCC
Q 009233 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
|+. .+|++||+++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 873 5799999999999999998654
No 17
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=2.5e-26 Score=201.50 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=96.5
Q ss_pred ceEEeeecCCCCCCCeEEEEE-CCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcccc
Q 009233 217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l-~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~ 294 (539)
.|++|+.++||++|+++.+++ .|++++|+|..+|+++||.|+|||+|++|+.|.+.++.|+||||||+||. ||+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 99999999988999999999999999999999988899999999999998 599998
Q ss_pred CCcccccccccccceEEecCeEEEcCCCCCC
Q 009233 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 295 P~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
|. ...|++||+++++|+|||++++.+|
T Consensus 80 p~----~~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PD----DAALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SS----SCBCCEECEEEETTEEEECCTTCCC
T ss_pred CC----cCCcCEEEEEEECCEEEEeccCcCC
Confidence 65 3589999999999999999976543
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=1.2e-26 Score=205.30 Aligned_cols=104 Identities=21% Similarity=0.463 Sum_probs=96.4
Q ss_pred cCceEEeeecCCCCCCCeEEEEECCe-eEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCcc
Q 009233 215 KNFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCE 292 (539)
Q Consensus 215 ~~~W~~va~~~dL~~g~~~~~~l~g~-~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~ 292 (539)
.+.|++||.++||++|+++.+++.|+ +|+|+|. +|+++||.|+|||+|++|+.|.+.++.|+||||||+||+ ||+|+
T Consensus 2 ~~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~ 80 (115)
T 2de6_D 2 NQIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPA 80 (115)
T ss_dssp --CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEE
T ss_pred CcceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEe
Confidence 46799999999999999999999999 9999998 999999999999999999999988899999999999996 99999
Q ss_pred ccCCcccccccccccceEEecCeEEEcCCCC
Q 009233 293 KMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 293 ~~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
.+|+. .+|++||+++++|.|||++++.
T Consensus 81 ~~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 81 SSPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp ETTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 99973 5799999999999999998654
No 19
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=2.2e-26 Score=200.22 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=95.3
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC-CCCccccC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~-~G~c~~~P 295 (539)
+|++||.++||++|+++.+.+.|++|+|+| .+|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ ||+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 5999999999999999999999999999999999999995 99999999
Q ss_pred CcccccccccccceEEecCeEEEcCCC
Q 009233 296 STQLRNVKIKSLPCFEQEGMIWIWPGD 322 (539)
Q Consensus 296 ~~~~~~~~L~~~pv~e~~G~IwV~l~~ 322 (539)
+. .+|++||+++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 73 589999999999999999854
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.92 E-value=1.3e-25 Score=197.57 Aligned_cols=100 Identities=18% Similarity=0.203 Sum_probs=92.8
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEeeccCCCCCC-CCCCCccc---CC-eeeccCCCeeEcC-CC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---EG-RIQCPYHGWEYST-DG 289 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG-~v~A~~n~CpHRGa-~Ls~G~v~---~~-~l~CPyHGW~Fd~-~G 289 (539)
.|++||.++||++|+++.+++.|++|+|+|..+| +++|+.|+|||+|+ +|+.|.+. ++ .|+||||||+||. ||
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998899 69999999999999 79999875 23 8999999999998 99
Q ss_pred CccccCCcccccccccccceEEecCeEEEcCC
Q 009233 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (539)
Q Consensus 290 ~c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (539)
+|+.+|. .+|++|||++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999986 57999999999999999874
No 21
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=1.8e-25 Score=199.56 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=95.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCC--cccCCeeeccCCCeeEcC-CCCccc
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEK 293 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G--~v~~~~l~CPyHGW~Fd~-~G~c~~ 293 (539)
.|++||.++||++|+++.+++.|++|+|+|. +|+++|+.|+|||+|++|+.| .++++.|+||||||+||+ +|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 5999999999999999999999999999996 999999999999999999999 888999999999999995 999999
Q ss_pred cCCcccccccccccceEEecCeEEEcCCCC
Q 009233 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 294 ~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
+|+. .+|++||+++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9973 5899999999999999998654
No 22
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.92 E-value=9.3e-26 Score=200.71 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.4
Q ss_pred CceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCC-CCCCCcccCC----eeeccCCCeeEcC-CC
Q 009233 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 289 (539)
Q Consensus 216 ~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa-~Ls~G~v~~~----~l~CPyHGW~Fd~-~G 289 (539)
..|++||.++||++|+++.+++.|++|+|+|..+|+++|++|+|||+|+ +|+.|.+.++ .|+||||||+||+ ||
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 5799999999999999999999999999999889999999999999999 8999987543 8999999999998 99
Q ss_pred CccccCCcccccccccccceEEecCeEEEcCCCC
Q 009233 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (539)
Q Consensus 290 ~c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~ 323 (539)
+|+.+|+ .+|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999987 5799999999999999998653
No 23
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.92 E-value=3.9e-25 Score=199.77 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=95.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCC-cEEEeeccCCCCCC-CCCCCccc---C-CeeeccCCCeeEcC-CC
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 289 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG-~v~A~~n~CpHRGa-~Ls~G~v~---~-~~l~CPyHGW~Fd~-~G 289 (539)
.|++||.++||++|+++.+++.|++|+|+|+.+| +++||.|+|||+|+ +|+.|.+. + ..|+||||||+||. ||
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998778 99999999999999 59999875 3 28999999999997 99
Q ss_pred CccccCCcccccccccccceEEecCeEEEcCCCCCC
Q 009233 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 290 ~c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
+|+.+|+ .+|++|||++++|+|||+++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999987 579999999999999999976543
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.91 E-value=4.5e-25 Score=196.70 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=89.4
Q ss_pred cCceEEeeecCCCCCCCeEEEEEC-CeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccC-----CeeeccCCCeeEcC-
Q 009233 215 KNFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYST- 287 (539)
Q Consensus 215 ~~~W~~va~~~dL~~g~~~~~~l~-g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~-----~~l~CPyHGW~Fd~- 287 (539)
.+.|++||.++||++|..+.+.+. |++|+|||..+|+++|++|+|||+|++|+.|.+.+ ..|+||||||+||+
T Consensus 7 ~~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 7 IQVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred ccceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 357999999999999988888885 79999999999999999999999999998765432 25999999999995
Q ss_pred CCCccccCCcccccccccccceEE-ecCeEEEcCC
Q 009233 288 DGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWIWPG 321 (539)
Q Consensus 288 ~G~c~~~P~~~~~~~~L~~~pv~e-~~G~IwV~l~ 321 (539)
||+|+..|. .+|++|||++ .+|.|||...
T Consensus 87 tG~~~~~p~-----~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR-----VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT-----CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC-----CccceEEEEEEeCCEEEEecC
Confidence 999999987 5799999986 4899999763
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.91 E-value=1.9e-25 Score=207.99 Aligned_cols=110 Identities=24% Similarity=0.387 Sum_probs=95.6
Q ss_pred ccCceEEeeecCCCCCCCeEEEEECCeeEEEEEcCCCcEEEeeccCCCCCCCCCCCcccC----CeeeccCCCeeEcC-C
Q 009233 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 288 (539)
Q Consensus 214 ~~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~dG~v~A~~n~CpHRGa~Ls~G~v~~----~~l~CPyHGW~Fd~-~ 288 (539)
..+.|++||.++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.+.+ +.|+||||||+||. |
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 467899999999999899999999999999999 59999999999999999999998753 68999999999998 9
Q ss_pred CCccc--c-CCccc-------ccccccccceEEecCeEEEcCCCCC
Q 009233 289 GKCEK--M-PSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEP 324 (539)
Q Consensus 289 G~c~~--~-P~~~~-------~~~~L~~~pv~e~~G~IwV~l~~~~ 324 (539)
|+|+. + |.... ...+|++|||++++|+|||++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~ 137 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEP 137 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCC
Confidence 99986 2 53211 1367999999999999999998754
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.87 E-value=9.9e-23 Score=193.02 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=88.6
Q ss_pred hhHHHHHHHHhhhhccCcccccccccCCCCCCchhhHHhhccCCCCcccccCCCCCccccccCceEEeeecCCCCCCCeE
Q 009233 154 KLAYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMV 233 (539)
Q Consensus 154 ~~~~~e~~~~~r~l~~~sa~~~~~~~~~~a~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~W~~va~~~dL~~g~~~ 233 (539)
+-..|.++.||.||+++.++.+..+.+...+. ..+.+.... ....+|+. ..||.++||++|+++
T Consensus 3 ~~~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~~p~------~~v~~~~dL~~g~~~ 66 (175)
T 4aay_B 3 RCQNMVDIGRRQFLRGGALAAAGATAAVFGVG-----APQARAATA-----AAGVEYPA------NRLANISELTLNEPL 66 (175)
T ss_dssp ---------------------------------------------------CCSCCCCC------EEEEEGGGCBBTBCE
T ss_pred cchhhccccHHHHhhhhHHhhhheeEeccccc-----ccccccccc-----CcccCCCc------ceEEEHHHCCCCCEE
Confidence 33567789999999976666443221111110 000010000 01123433 379999999999999
Q ss_pred EEEECC--eeEEEEEc---------CCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcC--CCCccccCCcccc
Q 009233 234 PFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLR 300 (539)
Q Consensus 234 ~~~l~g--~~vvl~R~---------~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~--~G~c~~~P~~~~~ 300 (539)
.+++.| ++++|+|. .+|+++||+|+|||+|++|+.| .+++.|+||||||+||. +|+|+.+|+.
T Consensus 67 ~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~--- 142 (175)
T 4aay_B 67 DVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT--- 142 (175)
T ss_dssp EEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS---
T ss_pred EEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC---
Confidence 999974 58999997 5999999999999999999998 67889999999999996 5999999973
Q ss_pred cccccccceEE-ecCeEEEc
Q 009233 301 NVKIKSLPCFE-QEGMIWIW 319 (539)
Q Consensus 301 ~~~L~~~pv~e-~~G~IwV~ 319 (539)
..|++||+++ .+|.||+-
T Consensus 143 -~~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 143 -QNLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp -SCCCBEEEEECTTSEEEEE
T ss_pred -CCcCEEEEEEEcCCEEEEE
Confidence 5799999999 69999964
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.85 E-value=3.2e-21 Score=174.03 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=89.0
Q ss_pred ceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEeeccCCCCCCCCCCCc
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 270 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~--------------------------dG~v~A~~n~CpHRGa~Ls~G~ 270 (539)
.|..+ .+++|++|+.+.+.+.|++++|+|.. +|+++||.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 45566 88999999999999999999999963 8999999999999999999998
Q ss_pred ccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCeEEE
Q 009233 271 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (539)
Q Consensus 271 v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e-~~G~IwV 318 (539)
++++.|.||||||+||.+|+|+.+|+. ..|+.||+++ .+|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888899999999999999999998873 5799999999 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.82 E-value=4.5e-21 Score=175.28 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=88.7
Q ss_pred CceEEeee-cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCc
Q 009233 216 NFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKC 291 (539)
Q Consensus 216 ~~W~~va~-~~dL~~g~~~~~~-l~g~~vvl~R~~dG~v--~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c 291 (539)
..|+.++. ++||++|..+.+. +.|++++++|+.+|++ +|++|+|||+|++|+.|. .++.|+||||||+||.+|+|
T Consensus 20 g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~ 98 (139)
T 1rfs_A 20 GNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGRV 98 (139)
T ss_dssp SCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCCE
T ss_pred CCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCCC
Confidence 45777877 8999987776665 5788888888889999 999999999999999887 56899999999999999999
Q ss_pred cccCCcccccccccccceEEecCeEEEcCC
Q 009233 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (539)
Q Consensus 292 ~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~ 321 (539)
+.+|+. ..|++||+++++|.|||.+.
T Consensus 99 ~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 99 VRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred ccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 999873 58999999999999999863
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.82 E-value=1.7e-20 Score=170.06 Aligned_cols=98 Identities=17% Similarity=0.201 Sum_probs=88.0
Q ss_pred ceEEeeecCCCCCCCeEEEEEC--CeeEEEEEcC---------CCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeE
Q 009233 217 FWFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (539)
Q Consensus 217 ~W~~va~~~dL~~g~~~~~~l~--g~~vvl~R~~---------dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~F 285 (539)
-|+.+|.++||++|+++.+.+. |++++|+|.. +|+++||.|+|||+|++|+.+ ..++.|+||||||+|
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~F 85 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEF 85 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEE
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEE
Confidence 3789999999999999999986 8999999975 899999999999999999974 567899999999999
Q ss_pred cC--CCCccccCCcccccccccccceEEe--cCeEEEc
Q 009233 286 ST--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (539)
Q Consensus 286 d~--~G~c~~~P~~~~~~~~L~~~pv~e~--~G~IwV~ 319 (539)
|. +|+|+..|+. ..|++||+++. +|.|||.
T Consensus 86 d~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 86 DAEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EGGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 97 8999999873 57999999998 6789984
No 30
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=9.8e-21 Score=171.73 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=82.2
Q ss_pred eecCCCCCCCeEEEE-ECCeeEEEEEcCCCc--EEEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcc
Q 009233 222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298 (539)
Q Consensus 222 a~~~dL~~g~~~~~~-l~g~~vvl~R~~dG~--v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~ 298 (539)
...+++++|+...+. +.|.+.+++|..+|+ ++||.|+|||+|++|+.|. .++.|+||||||+||.+|+|+.+|+.
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 457788888776666 445566666667999 9999999999999999987 67899999999999999999999873
Q ss_pred cccccccccceEE-ecCeEEEcCCCC
Q 009233 299 LRNVKIKSLPCFE-QEGMIWIWPGDE 323 (539)
Q Consensus 299 ~~~~~L~~~pv~e-~~G~IwV~l~~~ 323 (539)
.+|++||+++ ++|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 4799999999 999999987643
No 31
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.75 E-value=3.3e-18 Score=163.46 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=85.8
Q ss_pred cCceEEeeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEeeccCCCCCCCCCC
Q 009233 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL 268 (539)
Q Consensus 215 ~~~W~~va~~~dL~~g~~~~~~l~g~~vvl~R~~--------------------------dG~v~A~~n~CpHRGa~Ls~ 268 (539)
...|+.| .+++|++|+.+.+.+.|++|+|+|.. +|+++|+.|+|||+||.+..
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3468899 59999999999999999999999963 69999999999999995443
Q ss_pred CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEecCeEEE
Q 009233 269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (539)
Q Consensus 269 G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~~G~IwV 318 (539)
...+++.|.||||||+||.+|+|+.+|+ +..|+.+|+.+.+|.|||
T Consensus 139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa----~~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAGDFGGWFCPCHGSHYDISGRIRKGPA----PLNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EETTTTEEEETTTTEEECTTCCEEESSC----CSCCCCCCEEEETTEEEE
T ss_pred CCCCCCEEEcCCCCCEECCCCCEecCCC----CCCcceEEEEEECCEEEE
Confidence 3335689999999999999999999987 357888888889999987
No 32
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.74 E-value=7.3e-18 Score=161.30 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=84.3
Q ss_pred eEEeeecCCCCCCCeEEEEECCeeEEEEEc----------------------------------------CCCcEEEeec
Q 009233 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 257 (539)
Q Consensus 218 W~~va~~~dL~~g~~~~~~l~g~~vvl~R~----------------------------------------~dG~v~A~~n 257 (539)
|..+ .+++|++|+.+.+...|++|+|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 7999999999999999999999992 2899999999
Q ss_pred cCCCCCCCCCCC-cccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEEe-cCeEEE
Q 009233 258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (539)
Q Consensus 258 ~CpHRGa~Ls~G-~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e~-~G~IwV 318 (539)
+|||+||+|+.+ ..+.+.|.||||||+||.+|+|+..|+. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 999999999984 4445899999999999999999998873 57999999986 689987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.74 E-value=4.4e-18 Score=163.91 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=86.5
Q ss_pred eeecCCCCCCCeEEEEECCeeEEEEEcC--------------------------CCcEEEeeccCCCCCCCCCCCcccCC
Q 009233 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (539)
Q Consensus 221 va~~~dL~~g~~~~~~l~g~~vvl~R~~--------------------------dG~v~A~~n~CpHRGa~Ls~G~v~~~ 274 (539)
.+.+++|++|+.+.+...|++|+|+|.. +|+++|+.|+|||+||+|+.|.++++
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~~ 154 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDFG 154 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTTS
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCCC
Confidence 4789999999999999999999999852 89999999999999999999988788
Q ss_pred eeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCeEEE
Q 009233 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (539)
Q Consensus 275 ~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e-~~G~IwV 318 (539)
.|.||||||+||.+|+++.+|+ ...|..||+++ .+|.|+|
T Consensus 155 ~~~CP~HGs~FD~~G~v~~gPa----~~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 155 GYYCPCHGSHYDASGRIRKGPA----PLNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SEEETTTTEEECTTCCEEESSC----CSCCCCCCEEEETTTEEEE
T ss_pred EEEeCCCCCEECCCCCCccCCC----CCCCcceeEEEEECCEEEE
Confidence 9999999999999999999987 35799999998 7899987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.74 E-value=6.3e-18 Score=154.77 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=84.0
Q ss_pred eecCCCCCCCeEEEEECCeeEEEEEcC----------------------------------------CCcEEEeeccCCC
Q 009233 222 AFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------------DGIPGCVQNTCAH 261 (539)
Q Consensus 222 a~~~dL~~g~~~~~~l~g~~vvl~R~~----------------------------------------dG~v~A~~n~CpH 261 (539)
..+++|++|+.+++...|+||.|.|.. +|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 457899999999999999999999851 7899999999999
Q ss_pred CCCCCCC-CcccCCeeeccCCCeeEcCCCCccccCCcccccccccccceEE-ecCeEEE
Q 009233 262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (539)
Q Consensus 262 RGa~Ls~-G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~~~~L~~~pv~e-~~G~IwV 318 (539)
+||+|+. +.++++.|.||||||+||.+|+|+.+|+. ..|..||+.+ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 77777899999999999999999999873 5799999998 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.72 E-value=5.6e-18 Score=159.04 Aligned_cols=98 Identities=20% Similarity=0.284 Sum_probs=81.9
Q ss_pred ecCCCCCCCeEEEEECCee-------------EEEEEc-------------CCCcEEEeeccCCCCCCCCCCCcccCCee
Q 009233 223 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (539)
Q Consensus 223 ~~~dL~~g~~~~~~l~g~~-------------vvl~R~-------------~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l 276 (539)
..++|++|+.+.+..-|.+ +++.|- .+| ++||.|+|||+||+|+.|.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 5778888888777764443 555664 355 9999999999999999988888999
Q ss_pred eccCCCeeEcC-CCC-ccccCCcccccccccccceEEecCeEEEcCCCCCC
Q 009233 277 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (539)
Q Consensus 277 ~CPyHGW~Fd~-~G~-c~~~P~~~~~~~~L~~~pv~e~~G~IwV~l~~~~p 325 (539)
.||||||+||. +|. |+.+|+ ...|..||+++.+|.|||+++...+
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa----~~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPP----PRPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSC----SSCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCC----CCCCcEEEEEEECCEEEEEecCccc
Confidence 99999999997 586 999987 3589999999999999999876544
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.69 E-value=5.8e-18 Score=160.87 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=82.2
Q ss_pred cCCCCCCCeEEEE-ECCeeEEEEEcCCCcE--EEeeccCCCCCCCCCCCcccCCeeeccCCCeeEcCCCCccccCCcccc
Q 009233 224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (539)
Q Consensus 224 ~~dL~~g~~~~~~-l~g~~vvl~R~~dG~v--~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~Fd~~G~c~~~P~~~~~ 300 (539)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|+.+. .++.|.||||||+||.+|+|+.+|+
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa---- 144 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPA---- 144 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSC----
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCC----
Confidence 5678888887776 7789999999899998 999999999999999887 5679999999999999999999987
Q ss_pred cccccccceEEecCeEEEcC
Q 009233 301 NVKIKSLPCFEQEGMIWIWP 320 (539)
Q Consensus 301 ~~~L~~~pv~e~~G~IwV~l 320 (539)
...|+.||+.+.+|.|||.+
T Consensus 145 ~~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 145 PLSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp CSCCBCCCCCCSSSSCCCCC
T ss_pred CCCCCeEEEEEECCEEEEEe
Confidence 35899999999999999965
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.60 E-value=6.8e-17 Score=156.52 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=72.6
Q ss_pred EEEEECCeeEEEEEcC------------CCcEEEeeccCCCCCCCCCCCcc-----------cCCeeeccCCCeeEcCC-
Q 009233 233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 288 (539)
Q Consensus 233 ~~~~l~g~~vvl~R~~------------dG~v~A~~n~CpHRGa~Ls~G~v-----------~~~~l~CPyHGW~Fd~~- 288 (539)
+.+++.+.+++++|.. +|+++|+.|+|||+||+|+.|.+ .++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 4567888888888876 79999999999999999998853 57899999999999985
Q ss_pred -CCccccCCcccccccccccceEEe--cCeEEEcCC
Q 009233 289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 321 (539)
Q Consensus 289 -G~c~~~P~~~~~~~~L~~~pv~e~--~G~IwV~l~ 321 (539)
|+|+.+|+. ..|+.|++.+. +|.|||...
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence 699998873 46899999877 899999753
No 38
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=78.83 E-value=4.8 Score=32.18 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=49.4
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009233 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (539)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~ 150 (539)
-||..|.=+-.|-.-=.|+++-||..+- .-|..|+.|.+.|.+.-.++-+.|++|+.
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4999999888887888899999998753 46788999999999999999999999874
No 39
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=72.56 E-value=5 Score=32.24 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=49.0
Q ss_pred eccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009233 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (539)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~ 150 (539)
-||..|+=+-.|-..=.++++-||..+- .-|..|+.|.+.|.+.-.++-+.|+||+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999888888888899999998753 35678999999999999999999999863
No 40
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=66.25 E-value=13 Score=35.29 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred ceeehhhHHHHhh-------hcceeeccccc--------hhHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 009233 70 KFLDVNQALEVAR-------YDIQYCDWRAR--------QDVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (539)
Q Consensus 70 ~~~~~~~~~~~~~-------~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (539)
+|-.||+|.+++. ||.+.-.+... .+.| .+|++++.+.++=+. ..+..|++++.+.+++
T Consensus 92 ~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~~ 166 (207)
T 3bvo_A 92 HSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQKE 166 (207)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHHH
Confidence 6789999999875 55433233222 2355 599999999986543 2255566666655554
Q ss_pred H
Q 009233 134 L 134 (539)
Q Consensus 134 ~ 134 (539)
+
T Consensus 167 ~ 167 (207)
T 3bvo_A 167 F 167 (207)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=64.52 E-value=13 Score=34.09 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=38.3
Q ss_pred CceeehhhHHHHhh-------hcceeeccccch--------hHH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009233 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (539)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (539)
-+|--||+|.+++. ||...--..... +.| .+|++++++.|+-+. .+..++..|++++....+
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 37899999999985 454333222222 245 499999999987542 122335555555555433
Q ss_pred HH
Q 009233 133 DL 134 (539)
Q Consensus 133 ~~ 134 (539)
++
T Consensus 127 ~~ 128 (171)
T 1fpo_A 127 TR 128 (171)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 42
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=56.55 E-value=44 Score=30.88 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCceeehhhHHHHhh-------hccee-eccccch------------h-HHHHHHHHHHHHHhh
Q 009233 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVL 110 (539)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------~-~~~~~~~~~~~~~~~ 110 (539)
..-+|.-||+|.+++. ||.+- ......+ + |..+|++|+++.|.=
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~ 118 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMD 118 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhcc
Confidence 6778999999999864 56544 2222111 2 348899999999863
No 43
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=44.83 E-value=57 Score=29.82 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=47.4
Q ss_pred CceeehhhHHHHhh-------hcceeeccccch--------h-HHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHH
Q 009233 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------D-VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQ 131 (539)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 131 (539)
-+|.-||+|.++++ ||.+-....... + +..+|++|+++.++-+. .+ ..++..|++++....
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 57899999999975 554433333322 2 34889999999987432 11 122444444444433
Q ss_pred ----HHHHHHHHHHhhhHHHHHHHhhhhHHHHHHH
Q 009233 132 ----EDLAQAHRQVHISEARVATALDKLAYMEALV 162 (539)
Q Consensus 132 ----~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~ 162 (539)
+++.+|=..-...+ ....+.|+.+++++.
T Consensus 130 ~~~~~~l~~~~~~~d~~~--A~~~~~kL~f~~kl~ 162 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWLA--AADQIRKLKFIAKLK 162 (174)
T ss_dssp HHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHH--HHHHHHHHHHHHHHH
Confidence 33334333222222 223456666665443
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.91 E-value=65 Score=26.15 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHH--------------HHHHHHHHHHHHhhhHHHHHHHhhhh
Q 009233 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAE--------------LQEDLAQAHRQVHISEARVATALDKL 155 (539)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~e~rv~~~L~~~ 155 (539)
..|..||-..+..++-=++=|..||.+-.. |++|..+-.++-+.-+.|+..-|+|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777666666655556666666555 44455555555666667777777663
No 45
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=42.50 E-value=29 Score=25.74 Aligned_cols=38 Identities=16% Similarity=0.333 Sum_probs=30.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhH
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~ 156 (539)
||..|.|++..|.+++..+..+.-.....+.++|..+.
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el~ 50 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMT 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999888877777777777776553
No 46
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=40.35 E-value=6.4 Score=37.05 Aligned_cols=72 Identities=26% Similarity=0.398 Sum_probs=45.0
Q ss_pred ceeeeeccCCCCCCCCCCCceeehhhHHH--HhhhcceeeccccchhHHHHHHHHHHHHHhhChhhhhccchhhHHHHHH
Q 009233 51 WSTLFDVEDPRSKVPQCKGKFLDVNQALE--VARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA 128 (539)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (539)
-..+|.-||||- .|-||=. .--||+.|+|-. .--+.+...|..+-.-+.-|+|||+||+
T Consensus 62 lnqifnkedpry----------evvqagasaahdfdvryldih---------khgreiarllekiqkyfQ~IEtlK~ql~ 122 (294)
T 3caz_A 62 LNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDIH---------KHGREIARLLEKIQKYRQEIEEIKKEYK 122 (294)
T ss_dssp HTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcch----------HHHHcccccccccchhhhhHH---------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999984 4445433 345888888732 2223444455555556667999999999
Q ss_pred HHHHH-HHHHHHHH
Q 009233 129 ELQED-LAQAHRQV 141 (539)
Q Consensus 129 ~~~~~-~~~~~~~~ 141 (539)
+.|+- +---||++
T Consensus 123 nf~e~RLiYDHYKl 136 (294)
T 3caz_A 123 ETDKYRERYDHYKV 136 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 88863 22235544
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.05 E-value=32 Score=23.79 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=19.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009233 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (539)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (539)
..|.++++..|+|+..|+.++..-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777766655544
No 48
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.63 E-value=36 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARV 148 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv 148 (539)
+..||.|+++||.++..-..+.--..+|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888877776666665555554
No 49
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=34.65 E-value=47 Score=20.73 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 009233 121 GTMKKELAELQEDLAQAHRQV 141 (539)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ 141 (539)
..|-|||..|||.+.+-..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999888776654
No 50
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=33.83 E-value=1.1e+02 Score=24.93 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 120 ~~~~~~~~~~~~~~----------~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
+..|+.+++.|+.. +..++.+++.....+.++|..++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777665 889999999999999999998877
No 51
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=33.69 E-value=39 Score=35.61 Aligned_cols=56 Identities=9% Similarity=0.017 Sum_probs=32.3
Q ss_pred EEEEecCCCCeEEEEEEeeccchhhccCchhHHHHHHHHH-------HHHHhhhHHHHHHHhhhccC
Q 009233 438 LHVCLPSSRKKTRLLYRMSLDFASVLKHVPFMQYLWRHFA-------EQVLNEDLRLVLGQQERMNN 497 (539)
Q Consensus 438 l~~~~Pvs~~~tr~~~~~~~~f~~~~~~~p~~~~~~~~~~-------~~V~~ED~~IlE~qQ~~l~~ 497 (539)
+....|+++++|.+...+.. .... .+..++.+.... ..+..||..++|.+|+++..
T Consensus 329 ~rv~~P~gpdkTev~~~~~v--~kda--pe~~k~~~~~~~~~~fgpsG~v~~dD~e~~e~~Q~g~~~ 391 (460)
T 1uli_A 329 IRAWHPRGPNEIEVWAFTVV--DADA--PEEMKEEYRQQTLRTFSAGGVFEQDDGENWVEIQQVLRG 391 (460)
T ss_dssp EEEEEECSTTCEEEEEEEEE--ETTS--CHHHHHHHHHHHHHHSSTTSTTHHHHHHHHHHHHHHTTS
T ss_pred EEEEEecCCCeEEEEEEEec--cCCC--ChHHHHHHHHHHhhccCCcccCcHhHHHHHHHHHHHhcc
Confidence 34457999999986654332 2111 111222222111 22445799999999999964
No 52
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.42 E-value=94 Score=24.45 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=31.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHhhhhHHHHHHHH
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHISE-----ARVATALDKLAYMEALVN 163 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~rv~~~L~~~~~~e~~~~ 163 (539)
+|...|.++|.+|.+||.+-..|-.+.. .|+...--.++.+..+.+
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~ 59 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKK 59 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998888777664 334443344444444444
No 53
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.67 E-value=1e+02 Score=32.09 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHHHHHHhhChhhhhc---cchhhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHhhhhHHHHH
Q 009233 101 LLHEKVVEVLNPLARDY---KSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYMEA 160 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~rv~~~L~~~~~~e~ 160 (539)
.+.+++.+.|+....+. .-...|++||.++|+.++++..|-. .+|+.|++.+.|+-++|.
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEG 450 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554443332 2234589999999999998887743 467788888888888864
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.22 E-value=85 Score=29.39 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
.+|.-|..+.++..+=..-+.+...|+..||++++.+..+...++.+.++++..+--
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i 73 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEV 73 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhH
Confidence 344445555554444444455777777888888888888877777666655554433
No 55
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.99 E-value=26 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 009233 119 SIGTMKKELAELQEDLAQAHRQVHI 143 (539)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (539)
++..||+.+..||.+..+|..++-.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~ 29 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVAR 29 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888887777666543
No 56
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.67 E-value=1.4e+02 Score=24.46 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHhhhhHHHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHI--SEARVATALDKLAYMEAL 161 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~--~e~rv~~~L~~~~~~e~~ 161 (539)
|..|+.|++.|+.+++++..++.. .+.=|..-.++|-.|.++
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNei 53 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEI 53 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHH
Confidence 445555555555555555554443 244567788888888543
No 57
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.40 E-value=35 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCcEEEeeccCCCCCCCCCCCcccCCeeeccCCCeeE
Q 009233 248 KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (539)
Q Consensus 248 ~dG~v~A~~n~CpHRGa~Ls~G~v~~~~l~CPyHGW~F 285 (539)
.+|+|.-....||.-|+.+.... ..+++.|+--|++|
T Consensus 11 ~~~kv~~~~k~CP~CG~~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 11 KDGKVIRKNKFCPRCGPGVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp CSSCEECSSEECSSSCSSCEEEE-CSSEEECSSSCCEE
T ss_pred ECCEEEEecccCCCCCCceEEec-CCCeEECCCCCCEE
Confidence 36788888889999888665443 35799999888765
No 58
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.68 E-value=2.4e+02 Score=23.19 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=37.1
Q ss_pred HHHHHhhChhhhhccchhhHHHH-------HHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHh
Q 009233 104 EKVVEVLNPLARDYKSIGTMKKE-------LAELQEDLAQAHRQVHISEARVATALDKLAYMEALVND 164 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e~~~~~ 164 (539)
+|..-.=|.|-.|..|...|-|| |+.|..|-+.-..++.-.++|+..+|..+-. |++.+.
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~-EklAkl 70 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL-EKLARM 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-HHHHHH
Confidence 34444445566666676665554 4555555556666777788888888876543 555553
No 59
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=26.23 E-value=1.3e+02 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHh
Q 009233 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (539)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (539)
|..+-.+|+++.+.+. +. =..++|+|..+++=|.|+|+.+-
T Consensus 37 l~qv~q~~v~ai~sl~--~q-DpnV~kDLdn~~acL~k~~~t~~ 77 (97)
T 3g80_A 37 LEQLAQETQATIQTLM--IA-DPNVNKDLRAFCEFLTVQHQRAY 77 (97)
T ss_dssp HHHHHHHHHHHHHTCC--CC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--cc-CchHHHHHHHHHHHHHHHHHHHH
Confidence 4455668888888877 33 27899999999999999998654
No 60
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=26.06 E-value=93 Score=27.64 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=34.5
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHH
Q 009233 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (539)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~ 157 (539)
++.-.....||+|+++|++++.+.-.++- +++.+..-|+.+..
T Consensus 11 ~~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~ 53 (147)
T 2rjz_A 11 AFQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITR 53 (147)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 34445678999999999999999998886 77777777777666
No 61
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.36 E-value=39 Score=25.35 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=17.7
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 009233 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (539)
.|-+.|..++.++ .+|.+|..+|++++.+...+
T Consensus 24 EVD~FLd~v~~~~---~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDY---EIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 3555555555554 35667777777776665543
No 62
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=25.26 E-value=1.4e+02 Score=28.38 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~ 158 (539)
+..|++++++|+++|.+++...-+...|..........+
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999888887776
No 63
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=24.93 E-value=73 Score=21.57 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.9
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 009233 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (539)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (539)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 4567888887653 356666665554
No 64
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=24.23 E-value=1.8e+02 Score=23.52 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 009233 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (539)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~ 154 (539)
+..|...++.++..+.+... ...++++|..|.+.+..-...+.-=..++..+|..
T Consensus 52 i~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 52 LSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777666532 22477777777777777777666666666666654
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.99 E-value=2.4e+02 Score=24.81 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~~~~~e 159 (539)
+-.||.+|..+|.++..+..++--...++..-..++..+|
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666665555555555555555444
No 66
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=23.44 E-value=1.4e+02 Score=19.53 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHH
Q 009233 121 GTMKKELAELQEDLAQAHRQVHISEAR 147 (539)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~e~r 147 (539)
..|.+++-.||.-+++-+.++-..|.-
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666666555444433
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.97 E-value=1.1e+02 Score=24.28 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=17.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~ 150 (539)
|..|++.+..|++++-++..++..+...+..
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666665555555444443
No 68
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=22.27 E-value=2.3e+02 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=22.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (539)
+|...|.++|.+|.+||.+-.-|-.+.
T Consensus 16 ~s~eEL~~~L~elk~ELf~LR~q~atg 42 (72)
T 3v2d_2 16 LSPVELEKLVREKKRELMELRFQASIG 42 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999998887776554
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.25 E-value=1.2e+02 Score=26.72 Aligned_cols=10 Identities=40% Similarity=0.448 Sum_probs=5.0
Q ss_pred EEEEEecCCC
Q 009233 33 RVFALFGEEG 42 (539)
Q Consensus 33 ~~~~~~~~~~ 42 (539)
+.|.|-|+|+
T Consensus 17 k~Y~i~g~e~ 26 (138)
T 3hnw_A 17 KVIKLGGYES 26 (138)
T ss_dssp EEEEECSCSC
T ss_pred EEEEecCCCc
Confidence 3455555543
No 70
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=21.94 E-value=2.1e+02 Score=25.00 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHIS 144 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (539)
+|...|.++|.+|.+||.+-.-|-.+.
T Consensus 13 ~s~eEL~~~L~eLK~ELf~LRfq~atg 39 (124)
T 4a17_U 13 QTEEQLVGELGKLQTELSQLRIAKIAG 39 (124)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 568899999999999998877776655
No 71
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=21.86 E-value=2.5e+02 Score=21.86 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhh
Q 009233 118 KSIGTMKKELAELQEDLAQAHRQVHI 143 (539)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (539)
+|...|.++|.+|..||..-.-|-.+
T Consensus 12 ~s~~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 12 MTPAEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999887766555
No 72
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=21.57 E-value=2e+02 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009233 121 GTMKKELAELQEDLAQAHRQVHISEARVA 149 (539)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~e~rv~ 149 (539)
.+|+..|+.||++|-.--++.+..++++.
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555555555555554
No 73
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.50 E-value=2.4e+02 Score=23.19 Aligned_cols=30 Identities=10% Similarity=0.262 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009233 120 IGTMKKELAELQEDLAQAHRQVHISEARVA 149 (539)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~ 149 (539)
|..|++.+..|++++-++..++..+...+.
T Consensus 46 i~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444443333
No 74
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.19 E-value=41 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=21.1
Q ss_pred cCCCCCC-CCCCCcccCCeeeccCCCeeEc
Q 009233 258 TCAHRAC-PLHLGSVNEGRIQCPYHGWEYS 286 (539)
Q Consensus 258 ~CpHRGa-~Ls~G~v~~~~l~CPyHGW~Fd 286 (539)
.||.-|. +|.... ..+.++|+.-|..|.
T Consensus 7 ~CP~C~~~~l~~d~-~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 7 VCPACESAELIYDP-ERGEIVCAKCGYVIE 35 (50)
T ss_dssp SCTTTSCCCEEEET-TTTEEEESSSCCBCC
T ss_pred eCcCCCCcceEEcC-CCCeEECcccCCccc
Confidence 5888777 666544 346799999999887
No 75
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=21.00 E-value=73 Score=23.42 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=25.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 009233 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (539)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~ 154 (539)
-+|+..|+.+|++|+.=+.+|- .+||...|+.
T Consensus 3 ~m~~eeL~~DL~El~~Ll~~Ak------R~rVk~~L~~ 34 (50)
T 2a26_A 3 HMASEELQKDLEEVKVLLEKAT------RKRVRDALTA 34 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCC------SHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhc------cHHHHHHHHH
Confidence 4788999999999998888774 4677766653
No 76
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.35 E-value=2.7e+02 Score=22.28 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhh
Q 009233 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (539)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~~~L~~ 154 (539)
+..|...++.++..+.+..+ ...++++|..|++.+.+-...+.-=..++..+|..
T Consensus 52 i~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~ 114 (119)
T 3uun_A 52 LTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMD 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777776665532 23577777777777777776666666666666654
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=20.24 E-value=1.3e+02 Score=26.02 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 009233 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (539)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~rv~ 149 (539)
|+-|+.---+.||.+ .+++.+||+|+..-.++++..++-|+
T Consensus 55 V~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 55 VMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333445566 66788999999888888887766554
Done!