BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009236
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
++ L LD L G +P+G+S +L I+LS N + G IP +G + +L +L LS N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
+G+IP LG +L L+LN N +G +PAA+
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 397 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
+PC + G FD +D + L G++P I + +L +NL N
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
I G+IP +G + L +LDLS N +G IP+++ LT L ++L+ N LSG +P
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 369 SKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLD 428
S LPE + L +LDL ++G P +P CQ + K + L L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSN-NFSG-PILPNL-------CQ----NPKNTLQELYLQ 402
Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
N G G +P +S L S++LS N + G IPSSLG+++ L L L N G IP+ L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 489 GQLTALRRLNLNGNTLSGRVPAAL 512
+ L L L+ N L+G +P+ L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGL 486
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
L G +P + ++ L+++ L N + G IPS L +L + LS N G IP+ +G+L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 492 TALRRLNLNGNTLSGRVPAALG 513
L L L+ N+ SG +PA LG
Sbjct: 514 ENLAILKLSNNSFSGNIPAELG 535
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRV 508
+++S N + G IP +G++ L +L+L +N +GSIP+ +G L L L+L+ N L GR+
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 509 PAAL 512
P A+
Sbjct: 697 PQAM 700
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L L + + G +P+ + LR L ++LS N + G IP ++ + L +DLS N +G I
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 485 PESLGQ 490
PE +GQ
Sbjct: 721 PE-MGQ 725
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
L +G +L+HL +SGN I G + S +LE LD+S N F+ IP LG +AL+
Sbjct: 173 LSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226
Query: 496 RLNLNGNTLSGRVPAAL 512
L+++GN LSG A+
Sbjct: 227 HLDISGNKLSGDFSRAI 243
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L + L G IS L+ +N+S N G IP + SL+ L L+ N F G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 485 PESL-GQLTALRRLNLNGNTLSGRVPAALG 513
P+ L G L L+L+GN G VP G
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 454 NSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTA-LRRLNLNGNTLSGRV 508
N+ G +P +L + L+VLDLS+N F+G +PESL L+A L L+L+ N SG +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
L+ QG+R +++L N++ G + S+ LD+SYN +G IP+
Sbjct: 594 LEFQGIRS---EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
+G + L LNL N +SG +P +G
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVG 677
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
+S+ +L+ +++S N+ IP LG ++L+ LD+S N +G ++ T L+ LN+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 500 NGNTLSGRVP 509
+ N G +P
Sbjct: 255 SSNQFVGPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480
++ L LD L G +P+G+S +L I+LS N + G IP +G + +L +L LS N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
+G+IP LG +L L+LN N +G +PAA+
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 397 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 455
+PC + G FD +D + L G++P I + +L +NL N
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 456 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509
I G+IP +G + L +LDLS N +G IP+++ LT L ++L+ N LSG +P
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 369 SKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLD 428
S LPE + L +LDL ++G P +P CQ + K + L L
Sbjct: 353 SGELPESLTNLSASLLTLDLSSN-NFSG-PILPNL-------CQ----NPKNTLQELYLQ 399
Query: 429 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 488
N G G +P +S L S++LS N + G IPSSLG+++ L L L N G IP+ L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 489 GQLTALRRLNLNGNTLSGRVPAAL 512
+ L L L+ N L+G +P+ L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGL 483
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
L G +P + ++ L+++ L N + G IPS L +L + LS N G IP+ +G+L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 492 TALRRLNLNGNTLSGRVPAALG 513
L L L+ N+ SG +PA LG
Sbjct: 511 ENLAILKLSNNSFSGNIPAELG 532
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRV 508
+++S N + G IP +G++ L +L+L +N +GSIP+ +G L L L+L+ N L GR+
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 509 PAAL 512
P A+
Sbjct: 694 PQAM 697
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L L + + G +P+ + LR L ++LS N + G IP ++ + L +DLS N +G I
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 485 PESLGQ 490
PE +GQ
Sbjct: 718 PE-MGQ 722
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
L +G +L+HL +SGN I G + S +LE LD+S N F+ IP LG +AL+
Sbjct: 170 LSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 223
Query: 496 RLNLNGNTLSGRVPAAL 512
L+++GN LSG A+
Sbjct: 224 HLDISGNKLSGDFSRAI 240
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L + L G IS L+ +N+S N G IP + SL+ L L+ N F G I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 485 PESL-GQLTALRRLNLNGNTLSGRVPAALG 513
P+ L G L L+L+GN G VP G
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 454 NSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTA-LRRLNLNGNTLSGRV 508
N+ G +P +L + L+VLDLS+N F+G +PESL L+A L L+L+ N SG +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 427 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 486
L+ QG+R +++L N++ G + S+ LD+SYN +G IP+
Sbjct: 591 LEFQGIRS---EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 487 SLGQLTALRRLNLNGNTLSGRVPAALG 513
+G + L LNL N +SG +P +G
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVG 674
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499
+S+ +L+ +++S N+ IP LG ++L+ LD+S N +G ++ T L+ LN+
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 500 NGNTLSGRVP 509
+ N G +P
Sbjct: 252 SSNQFVGPIP 261
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 426 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 485
G++N L G +P I+KL L + ++ ++ GAIP L I +L LD SYN +G++P
Sbjct: 85 GINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 486 ESLGQLTALRRLNLNGNTLSGRVPAALG 513
S+ L L + +GN +SG +P + G
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYG 170
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 432 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 491
+ G +P+ +S+++ L +++ S N++ G +P S+ ++ +L + N +G+IP+S G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 492 TAL-RRLNLNGNTLSGRVP 509
+ L + ++ N L+G++P
Sbjct: 173 SKLFTSMTISRNRLTGKIP 191
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
++ Q I+L+ NS+ + +G +L LDL N G++P+ L QL L LN++ N
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 504 LSGRVPAALGGRLLHRASFKSMWYTWATCMRAPPF 538
L G +P GG L F Y C+ P
Sbjct: 280 LCGEIPQ--GGNL---QRFDVSAYANNKCLCGSPL 309
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP 461
++GL L N + G LP G+++L+ L S+N+S N++ G IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 494
+P +S +HL I+LS N I S + L L LSYN P + L +L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 495 RRLNLNGNTLS 505
R L+L+GN +S
Sbjct: 105 RLLSLHGNDIS 115
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 493
LP+G+ KL +L +NL+ N ++ + +L LDLSYN S+PE + +LT
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKSMWYTW 529
L+ L L N L VP + RL S+ Y W
Sbjct: 183 LKDLRLYQNQLKS-VPDGVFDRL------TSLQYIW 211
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 417 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDL 475
SH ++ L L + N L HL +NLS N + G+I S + + LEVLDL
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKSMW 526
SYN +S L L+ L L+ N L VP + RL S + +W
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRL---TSLQKIW 401
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
+ L L N + + + + +LQ++ L+ N I S ++ SLE LDLSYN+ +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 482 GSIPESLGQLTALRRLNLNGN 502
L++L LNL GN
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN 134
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481
+ L L N + + + + +LQ++ L+ N I S ++ SLE LDLSYN+ +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 482 GSIPESLGQLTALRRLNLNGN 502
L++L LNL GN
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGN 108
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503
+ L S+N+S N + I L ++VLDL N SIP+ + +L AL+ LN+ N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ 455
Query: 504 LSGRVPAALGGRLLHRASFKSMW 526
L VP + RL S + +W
Sbjct: 456 LKS-VPDGIFDRL---TSLQKIW 474
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRV 508
+NLS N + G++ L ++VLDL N SIP+ + L AL+ LN+ N L V
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS-V 488
Query: 509 PAALGGRLLHRASFKSMWYTW 529
P + RL S+ Y W
Sbjct: 489 PDGVFDRL------TSLQYIW 503
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLN 498
+ LRHLQ +NLS N G + LE+LD+++ + P S L LR LN
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 499 LNGNTLSGRVPAALGG 514
L+ L L G
Sbjct: 431 LSHCLLDTSNQHLLAG 446
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 435 FLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYN---FFNGSIPESLGQ 490
F+P + L +L+S++L N I +P + T +L+VLD N + + SL Q
Sbjct: 121 FIP--VHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIHYISRKDTNSLEQ 177
Query: 491 LTALRRLNLNGNTLSGRVPAALGGRLLHRASF 522
T L LN NGN + G P A ++ F
Sbjct: 178 ATNLS-LNFNGNDIKGIEPGAFISKIFQSLKF 208
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 32/78 (41%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L L L G PN H+Q + L N I+ + L+ L+L N + +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 485 PESLGQLTALRRLNLNGN 502
P S L +L LNL N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L ++L GN I +SL + +L L LS+N + SL LR L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 506 GRVPAALG 513
+VP L
Sbjct: 254 -KVPGGLA 260
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L ++L GN I +SL + +L L LS+N + SL LR L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 506 GRVPAALG 513
+VP L
Sbjct: 254 -KVPGGLA 260
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 236 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 295
R+++ +K N + LYQT + DS Y + + Y + L FAE+
Sbjct: 40 RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 94
Query: 296 TGVGQRVFDILINGDIAFQGVDVVKMSG 323
Q+VFD+ +NG + +D+ G
Sbjct: 95 AQSQQKVFDVRVNGHTVVKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 32.7 bits (73), Expect = 0.46, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 236 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 295
R+++ +K N + LYQT + DS Y + + Y + L FAE+
Sbjct: 36 RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 90
Query: 296 TGVGQRVFDILINGDIAFQGVDVVKMSG 323
Q+VFD+ +NG + +D+ G
Sbjct: 91 AQSQQKVFDVRVNGHTVVKDLDIFDRVG 118
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 467 IASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
++ L+VL L++N+ N P LTALR L+LN N L+
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 441 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500
S +RHL +LS + T+ L+VL+L+YN N E+ L L+ LNL+
Sbjct: 266 SSVRHL---DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322
Query: 501 GNTL 504
N L
Sbjct: 323 YNLL 326
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 426 GLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
LD L+ F + I K L + L+GNS+ +P+ + +++L VLDLS+N S+
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SL 285
Query: 485 PESLGQLTALR 495
P LG L+
Sbjct: 286 PAELGSCFQLK 296
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 436 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 493
LP+G+ KL +L + L N ++ + +L LDL N S+PE + +LT
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQ 182
Query: 494 LRRLNLNGNTLSGRVPAALGGRLLHRASFKSMW 526
L++L+LN N L VP + RL S +W
Sbjct: 183 LKQLSLNDNQLKS-VPDGVFDRL---TSLTHIW 211
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
L HL ++ L+GN I+ P S + SLE L +GQL L++LN+ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 503 TL-SGRVPA 510
+ S ++PA
Sbjct: 139 FIHSCKLPA 147
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
L HL ++ L+GN I+ P S + SLE L +GQL L++LN+ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 503 TL-SGRVPA 510
+ S ++PA
Sbjct: 134 FIHSCKLPA 142
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 438 NGI-SKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 495
NGI + L L+ + ++GNS + +P + +L LDLS P + L++L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 496 RLNLNGNTLSGRVPAALGGRLLHRASFKSMW 526
LN+ N L VP + RL S + +W
Sbjct: 498 VLNMASNQLKS-VPDGIFDRL---TSLQKIW 524
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLN 498
+ L HLQ++NLS N G + LE+LDL++ + + P+S L L+ LN
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 499 L 499
L
Sbjct: 429 L 429
>pdb|1O6O|D Chain D, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|E Chain E, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|F Chain F, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 119
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 201 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQAS--KAPNFYPEALYQ 258
G+ KP F D D P SFG A++++ ++ S S P E
Sbjct: 14 GSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANEKKESDESKSAFSFGSKPTGKEEGDGA 73
Query: 259 TALVSTDSQPDLQYTMD 275
A +S ++P+ Q + D
Sbjct: 74 KAAISFGAKPEEQKSSD 90
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
+NL+ N +R P++ + L +LD +N + PE L L+ LNL N LS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 393 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 452
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 108 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 167
Query: 453 GNSIRGAIPSSLGTIASL-EVLDLSYNF 479
G + +I S+LGTIA L E++++S F
Sbjct: 168 GIIVVDSIYSTLGTIAPLAELVNISKEF 195
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 393 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 452
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 108 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 167
Query: 453 GNSIRGAIPSSLGTIASL-EVLDLSYNF 479
G + +I S+LGTIA L E++++S F
Sbjct: 168 GIIVVDSIYSTLGTIAPLAELVNISKEF 195
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 393 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 452
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 128 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 187
Query: 453 GNSIRGAIPSSLGTIASL-EVLDLSYNF 479
G + +I S+LGTIA L E++++S F
Sbjct: 188 GIIVVDSIYSTLGTIAPLAELVNISKEF 215
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 435 FLPNGISKL--------RHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYN---FFNG 482
F+ GIS + + L+S+ L N I +P T L+VLD N + +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSK 170
Query: 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASF 522
SL Q T L LNLNGN ++G P A + +F
Sbjct: 171 EDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNF 209
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L L ++ + L HL+ + L NSIR + +ASL L+L N+
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 485 PESLGQLTALRRLNLNGNTLS-------GRVPAAL 512
+ L+ LR L L N + RVP+ +
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|1T3B|A Chain A, X-Ray Structure Of Dsbc From Haemophilus Influenzae
Length = 211
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 361 VFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCV 400
VF + E LP+EV+ ++K +L +FG G P +
Sbjct: 146 VFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTPSI 185
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 411 CQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL 470
C T ++D G + LP I+++R L N+I+ P + L
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKL 58
Query: 471 EVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
+DLS N + P++ L +L L L GN ++ +P +L
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 411 CQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL 470
C T ++D G + LP I+++R L N+I+ P + L
Sbjct: 5 CPAACTCSNNIVDCRGKGLTEIPTNLPETITEIR------LEQNTIKVIPPGAFSPYKKL 58
Query: 471 EVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512
+DLS N + P++ L +L L L GN ++ +P +L
Sbjct: 59 RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSL 99
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 454 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
N+I G SLG SLE LDLS N + G L++L+ LNL GN
Sbjct: 89 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 449 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 454 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502
N+I G SLG SLE LDLS N + G L++L+ LNL GN
Sbjct: 63 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 506 GRVPAAL 512
P L
Sbjct: 139 TLPPGLL 145
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 425 LGLDNQGLRGFLPNGI-SKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYN 478
L L++ L+ LP+G+ KL L ++LS N S +G S SL+ LDLS+N
Sbjct: 33 LELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 22/86 (25%)
Query: 439 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF------------------ 480
+S L LQ +N S N + P L + +LE LD+S N
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 203
Query: 481 NGSIPE--SLGQLTALRRLNLNGNTL 504
N I + LG LT L L+LNGN L
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQL 229
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 446 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 506 GRVPAAL 512
P L
Sbjct: 138 TLPPGLL 144
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 484
L L L P + L LQ +N+S N+ + SL+VLD S N S
Sbjct: 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558
Query: 485 PESLGQL-TALRRLNLNGN 502
+ L ++L LNL N
Sbjct: 559 KQELQHFPSSLAFLNLTQN 577
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,247,312
Number of Sequences: 62578
Number of extensions: 760357
Number of successful extensions: 1851
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 158
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)