Query 009236
Match_columns 539
No_of_seqs 511 out of 3042
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:05:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 7E-99 2E-103 828.3 50.4 507 10-516 8-514 (623)
2 PF12819 Malectin_like: Carboh 100.0 5.1E-65 1.1E-69 521.7 32.6 323 30-364 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 1.9E-19 4.2E-24 198.8 25.7 89 421-509 443-532 (623)
4 PF11721 Malectin: Di-glucose 99.8 1.6E-20 3.5E-25 174.0 5.3 142 195-348 2-152 (174)
5 PF11721 Malectin: Di-glucose 99.6 5.3E-15 1.2E-19 137.1 8.7 134 28-170 3-174 (174)
6 PLN00113 leucine-rich repeat r 99.4 4.3E-13 9.3E-18 157.1 12.7 138 370-516 25-188 (968)
7 PLN00113 leucine-rich repeat r 99.0 3.5E-10 7.6E-15 132.6 7.5 106 421-526 476-584 (968)
8 PF12819 Malectin_like: Carboh 98.9 6.4E-09 1.4E-13 107.2 11.5 155 198-366 1-163 (347)
9 KOG0617 Ras suppressor protein 98.8 6.4E-10 1.4E-14 99.4 -0.4 34 422-456 81-114 (264)
10 KOG0617 Ras suppressor protein 98.7 1.2E-09 2.6E-14 97.6 -1.8 81 422-505 35-115 (264)
11 PF13855 LRR_8: Leucine rich r 98.5 5.7E-08 1.2E-12 73.6 3.2 61 444-504 1-61 (61)
12 KOG0472 Leucine-rich repeat pr 98.5 5.3E-08 1.2E-12 97.7 2.9 81 435-517 426-529 (565)
13 KOG0532 Leucine-rich repeat (L 98.3 5.7E-08 1.2E-12 101.4 -1.7 101 422-527 123-223 (722)
14 KOG4194 Membrane glycoprotein 98.3 8.1E-08 1.8E-12 100.5 -0.7 89 422-510 295-383 (873)
15 PF13855 LRR_8: Leucine rich r 98.3 2.9E-07 6.3E-12 69.7 2.4 59 422-480 3-61 (61)
16 KOG0472 Leucine-rich repeat pr 98.3 7.8E-08 1.7E-12 96.6 -1.1 91 423-518 209-300 (565)
17 PF14580 LRR_9: Leucine-rich r 98.3 4.7E-07 1E-11 83.6 4.0 80 421-505 20-101 (175)
18 KOG0444 Cytoskeletal regulator 98.2 2.2E-07 4.8E-12 97.8 -0.2 91 422-515 80-172 (1255)
19 KOG3593 Predicted receptor-lik 98.2 1.2E-06 2.5E-11 84.0 4.4 107 253-364 107-228 (355)
20 KOG4194 Membrane glycoprotein 98.2 2.1E-07 4.6E-12 97.5 -0.7 103 422-525 343-449 (873)
21 KOG0444 Cytoskeletal regulator 98.1 2.4E-07 5.3E-12 97.6 -2.8 102 421-525 269-374 (1255)
22 KOG0618 Serine/threonine phosp 98.0 9.8E-07 2.1E-11 97.1 -0.1 100 421-523 384-486 (1081)
23 PRK15387 E3 ubiquitin-protein 97.9 2.5E-05 5.5E-10 87.7 7.6 77 421-510 343-419 (788)
24 KOG4237 Extracellular matrix p 97.9 2.1E-06 4.4E-11 86.5 -1.1 108 409-517 51-165 (498)
25 PF14580 LRR_9: Leucine-rich r 97.9 1.2E-05 2.5E-10 74.4 3.8 82 421-505 43-126 (175)
26 PRK15387 E3 ubiquitin-protein 97.9 9.5E-06 2.1E-10 91.1 3.6 86 421-515 383-468 (788)
27 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.8E-10 55.6 3.2 36 469-505 2-37 (44)
28 KOG0618 Serine/threonine phosp 97.8 5.7E-06 1.2E-10 91.3 0.7 92 421-516 46-137 (1081)
29 KOG4579 Leucine-rich repeat (L 97.7 5.8E-06 1.3E-10 71.8 -0.4 88 421-511 54-141 (177)
30 PRK15370 E3 ubiquitin-protein 97.7 6E-05 1.3E-09 85.0 7.2 81 422-512 222-302 (754)
31 PLN03210 Resistant to P. syrin 97.7 6.5E-05 1.4E-09 89.7 7.9 92 422-515 636-727 (1153)
32 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 53.8 3.4 37 444-481 1-37 (44)
33 KOG4237 Extracellular matrix p 97.6 1.7E-05 3.7E-10 80.0 1.4 84 421-504 275-358 (498)
34 COG4886 Leucine-rich repeat (L 97.6 3.4E-05 7.3E-10 81.2 3.1 86 422-511 118-204 (394)
35 KOG1259 Nischarin, modulator o 97.6 1.5E-05 3.2E-10 77.7 0.3 91 420-516 307-399 (490)
36 cd00116 LRR_RI Leucine-rich re 97.6 2.7E-05 5.9E-10 79.1 1.6 86 421-506 109-207 (319)
37 cd00116 LRR_RI Leucine-rich re 97.5 3.2E-05 7E-10 78.5 1.4 85 421-505 166-263 (319)
38 PLN03210 Resistant to P. syrin 97.5 0.00021 4.6E-09 85.4 8.1 90 421-512 612-701 (1153)
39 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.5E-10 70.0 -1.9 90 422-515 29-122 (177)
40 PRK15370 E3 ubiquitin-protein 97.5 0.00014 3.1E-09 82.0 6.1 81 421-511 242-322 (754)
41 KOG1259 Nischarin, modulator o 97.4 6.1E-05 1.3E-09 73.5 1.2 80 422-505 286-365 (490)
42 KOG0532 Leucine-rich repeat (L 97.4 3.3E-05 7.2E-10 81.3 -0.8 86 422-512 168-253 (722)
43 KOG4658 Apoptotic ATPase [Sign 97.2 0.00014 3E-09 83.4 2.0 92 421-513 546-639 (889)
44 PF08263 LRRNT_2: Leucine rich 97.1 0.00061 1.3E-08 47.5 3.6 35 373-412 2-43 (43)
45 COG4886 Leucine-rich repeat (L 97.0 0.00034 7.3E-09 73.6 2.0 79 422-503 142-220 (394)
46 KOG4658 Apoptotic ATPase [Sign 96.8 0.00074 1.6E-08 77.6 2.8 83 420-503 571-653 (889)
47 KOG1859 Leucine-rich repeat pr 96.6 0.00012 2.5E-09 79.2 -4.7 81 421-507 188-269 (1096)
48 KOG1859 Leucine-rich repeat pr 96.2 0.00065 1.4E-08 73.7 -2.1 95 425-525 169-266 (1096)
49 KOG0531 Protein phosphatase 1, 95.9 0.0026 5.7E-08 67.5 0.8 82 421-507 96-177 (414)
50 KOG0531 Protein phosphatase 1, 95.7 0.0049 1.1E-07 65.5 2.0 81 420-505 118-199 (414)
51 KOG3207 Beta-tubulin folding c 95.6 0.0037 8.1E-08 64.3 0.4 83 422-505 224-314 (505)
52 KOG2982 Uncharacterized conser 95.4 0.0042 9E-08 61.0 0.1 71 405-478 85-156 (418)
53 KOG3207 Beta-tubulin folding c 95.2 0.0056 1.2E-07 63.1 0.2 85 420-505 197-284 (505)
54 KOG1644 U2-associated snRNP A' 95.0 0.028 6.1E-07 52.4 4.1 81 422-505 44-126 (233)
55 KOG2739 Leucine-rich acidic nu 94.9 0.019 4.1E-07 55.5 2.8 80 422-505 45-129 (260)
56 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 34.7 0.6 11 471-481 3-13 (22)
57 PF00560 LRR_1: Leucine Rich R 94.7 0.0099 2.1E-07 34.8 0.3 22 493-515 1-22 (22)
58 KOG2739 Leucine-rich acidic nu 94.4 0.029 6.3E-07 54.3 2.9 68 436-505 35-104 (260)
59 KOG2123 Uncharacterized conser 92.9 0.011 2.4E-07 57.6 -2.8 63 442-507 39-103 (388)
60 KOG0473 Leucine-rich repeat pr 92.1 0.0057 1.2E-07 58.1 -5.7 82 421-505 43-124 (326)
61 PRK15386 type III secretion pr 91.1 0.32 7E-06 50.9 5.1 10 445-454 95-104 (426)
62 KOG3665 ZYG-1-like serine/thre 90.5 0.15 3.3E-06 57.4 2.3 87 421-509 174-267 (699)
63 KOG1644 U2-associated snRNP A' 90.4 0.28 6.1E-06 46.0 3.5 61 443-505 41-101 (233)
64 COG5238 RNA1 Ran GTPase-activa 89.9 0.21 4.6E-06 48.8 2.4 41 440-480 88-132 (388)
65 PF13504 LRR_7: Leucine rich r 89.6 0.21 4.5E-06 27.2 1.2 13 493-505 2-14 (17)
66 KOG1909 Ran GTPase-activating 89.3 0.076 1.7E-06 53.5 -1.1 43 439-481 208-254 (382)
67 KOG3665 ZYG-1-like serine/thre 88.3 0.26 5.7E-06 55.5 2.1 83 421-505 149-233 (699)
68 smart00370 LRR Leucine-rich re 86.7 0.53 1.2E-05 28.5 1.9 18 492-510 2-19 (26)
69 smart00369 LRR_TYP Leucine-ric 86.7 0.53 1.2E-05 28.5 1.9 18 492-510 2-19 (26)
70 KOG0473 Leucine-rich repeat pr 86.5 0.02 4.4E-07 54.4 -6.7 77 438-517 36-112 (326)
71 KOG2982 Uncharacterized conser 85.3 0.33 7.1E-06 48.1 0.7 84 421-504 72-158 (418)
72 PRK15386 type III secretion pr 84.9 1.2 2.5E-05 46.9 4.6 82 422-516 54-138 (426)
73 COG5238 RNA1 Ran GTPase-activa 84.8 1.5 3.1E-05 43.2 4.8 37 421-457 93-133 (388)
74 smart00369 LRR_TYP Leucine-ric 84.8 0.8 1.7E-05 27.7 2.0 20 467-487 1-20 (26)
75 smart00370 LRR Leucine-rich re 84.8 0.8 1.7E-05 27.7 2.0 20 467-487 1-20 (26)
76 KOG1909 Ran GTPase-activating 84.6 0.47 1E-05 48.0 1.4 85 420-504 213-310 (382)
77 KOG2123 Uncharacterized conser 83.3 0.14 3.1E-06 50.1 -2.7 76 421-498 42-123 (388)
78 PF13306 LRR_5: Leucine rich r 82.1 2.9 6.3E-05 35.8 5.4 98 422-523 14-111 (129)
79 KOG2120 SCF ubiquitin ligase, 80.5 0.13 2.7E-06 51.0 -4.2 86 421-506 186-274 (419)
80 KOG3593 Predicted receptor-lik 78.9 1.8 3.8E-05 42.6 3.0 94 28-131 62-164 (355)
81 PF13516 LRR_6: Leucine Rich r 75.7 0.51 1.1E-05 28.0 -1.0 11 470-480 4-14 (24)
82 smart00364 LRR_BAC Leucine-ric 67.5 3.6 7.8E-05 25.1 1.3 17 493-510 3-19 (26)
83 PF13306 LRR_5: Leucine rich r 58.5 12 0.00026 31.9 3.6 75 422-501 37-112 (129)
84 smart00365 LRR_SD22 Leucine-ri 57.2 8.4 0.00018 23.5 1.7 12 469-480 3-14 (26)
85 KOG3864 Uncharacterized conser 51.9 3.2 7E-05 39.1 -1.1 81 421-501 102-185 (221)
86 KOG2120 SCF ubiquitin ligase, 51.0 1.9 4.1E-05 43.0 -2.9 59 444-502 185-244 (419)
87 smart00368 LRR_RI Leucine rich 49.0 13 0.00028 22.9 1.6 13 469-481 3-15 (28)
88 PF03944 Endotoxin_C: delta en 36.8 3E+02 0.0064 24.3 11.5 80 91-176 48-143 (143)
89 PRK06764 hypothetical protein; 35.6 34 0.00074 27.2 2.4 18 85-102 74-91 (105)
90 KOG3763 mRNA export factor TAP 32.5 21 0.00045 38.7 1.0 63 420-482 218-284 (585)
91 PF03422 CBM_6: Carbohydrate b 29.8 3.3E+02 0.0072 22.8 10.0 75 269-350 33-110 (125)
92 KOG1947 Leucine rich repeat pr 23.6 48 0.001 35.2 2.0 62 442-503 241-306 (482)
93 TIGR00864 PCC polycystin catio 20.5 75 0.0016 41.3 2.9 87 450-536 1-91 (2740)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=7e-99 Score=828.30 Aligned_cols=507 Identities=79% Similarity=1.295 Sum_probs=445.1
Q ss_pred HHHHHhhccccccCCCCcEEEccCCCCCCcCCCCCceeeccCcccCCcccccCCCCCCCCCcceeeccCCCCCCCceEEe
Q 009236 10 LVFCSALNSSSARHAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYII 89 (539)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~IdCG~~~~~~~~~~~~~w~~D~~~~~~~~~~~~~~~~~~~~y~t~R~F~~~~g~~~~Y~~ 89 (539)
+-+++++.++++++++++++||||++.++++|.+||+|++|..+++|.......+....++|+|+|+||..+|+++||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~ 87 (623)
T PLN03150 8 ASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNI 87 (623)
T ss_pred HHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEe
Confidence 33344555666677889999999999876455689999999887765444444444456789999999976788999999
Q ss_pred eecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCCCccceEEEEEEEecCCeEEEEEeecCCCCCeEee
Q 009236 90 NRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILS 169 (539)
Q Consensus 90 ~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~~~~~~~~E~i~~~~~~~l~v~f~~~~~~~pfIsa 169 (539)
|++++|+|+|||||+||+||++++.|.|||++||+.|.+|+.+|+..+..++||++++++++.++|||+|++.++||||+
T Consensus 88 ~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~ 167 (623)
T PLN03150 88 NRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILS 167 (623)
T ss_pred eecCCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeE
Confidence 99999999999999999999999999999999999999999988776778999999999999999999999899999999
Q ss_pred EEEEEcCCCccccCCCCccceeEEEEeeccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCceeeccccceeccCCCC
Q 009236 170 LEILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAP 249 (539)
Q Consensus 170 iEl~~l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~ 249 (539)
|||||||+++|..+.+.+.+.+|+++||+||||....+.+||+||+|++||+|.+|..+....+..+++...|..+...+
T Consensus 168 iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~ 247 (623)
T PLN03150 168 IEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAP 247 (623)
T ss_pred EEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCC
Confidence 99999999999754322346789999999999987777799999999999999998765545566677777777665667
Q ss_pred CCChHHHHHHhhccCCCCCCcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeecCcceeeecCCceeeE
Q 009236 250 NFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTAL 329 (539)
Q Consensus 250 ~~~P~~Vy~TAr~~~~~~~~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~ 329 (539)
+.+|+.||||||++.+...+++|.|++++++.|+|||||||++......++|+|||+|||+.+++++|+...+++.+.++
T Consensus 248 ~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~ 327 (623)
T PLN03150 248 NFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTAL 327 (623)
T ss_pred ccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccce
Confidence 88999999999998765578999999999999999999999975445678999999999999999999988777777889
Q ss_pred EEEEEeeecCeeEEEEEccCCCchhhhhhhhhhhhhhhccCCchHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccc
Q 009236 330 VLNTTVAVNGRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGA 409 (539)
Q Consensus 330 ~~~~~v~~~~~~l~i~~~p~~~~~~~lnalei~~~~~~~~~~~~~~~~aL~~~k~~~~~~~~~~W~~~~C~~~~~~w~gv 409 (539)
++++.+.++++.++|+|+|..+++|+||||||+++...+.++.+.|+.||+.+|+.+..+...+|+++||+|..++|.||
T Consensus 328 ~~~~~v~~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv 407 (623)
T PLN03150 328 VLNKTVAVSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGA 407 (623)
T ss_pred EEEeEEeecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccc
Confidence 99998888788899999999888899999999999998888999999999999999876544589999999888899999
Q ss_pred ccccCCCCceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhc
Q 009236 410 DCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLG 489 (539)
Q Consensus 410 ~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~ 489 (539)
.|..+......+++.|+|++|++.|.+|..+++|++|+.|+|++|.+.|.+|..++.|++|+.|+|++|+++|.+|+.++
T Consensus 408 ~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~ 487 (623)
T PLN03150 408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487 (623)
T ss_pred eeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence 99754433334699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEeccCCcCCccCCccccccc
Q 009236 490 QLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 490 ~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
+|++|+.|+|++|+|+|.+|..++++.
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhcc
Confidence 999999999999999999999987653
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=5.1e-65 Score=521.74 Aligned_cols=323 Identities=30% Similarity=0.492 Sum_probs=255.7
Q ss_pred EccCCCCCC--c-CCCCCceeeccCcccC-CcccccC-----CCCCCCCCcceeeccCCCCCCCceEEeeec--CCceeE
Q 009236 30 ISCGARQNI--H-SPPTNTLWFKDFAYTG-GIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN 98 (539)
Q Consensus 30 IdCG~~~~~--~-~~~~~~~w~~D~~~~~-~~~~~~~-----~~~~~~~~y~t~R~F~~~~g~~~~Y~~~~~--~~g~yl 98 (539)
||||++.+. + ++.+||+|++|..|+. |.+..+. ......++|+|||+|| +|.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799999763 2 3478999999998874 5544441 1223467899999999 577899999987 456999
Q ss_pred EEEEEecccCCCCC-----CCCcEEEEEcCeEEEEEecCCCCCccceEEEEEEEec-CCeEEEEEeecCCCC-CeEeeEE
Q 009236 99 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE 171 (539)
Q Consensus 99 vRl~F~~~~y~~~~-----~~~~F~v~~~~~~~~~v~~~f~~~~~~~~~E~i~~~~-~~~l~v~f~~~~~~~-pfIsaiE 171 (539)
|||||+|||||+.+ +++.|||++|++.|.+|...- ....+++||+++.+. ++.|+|||+|++.|+ |||||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE 157 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE 157 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence 99999999999864 256799999999999998532 223579999888887 799999999999887 9999999
Q ss_pred EEEcCCCccccCCCCccceeEEEEeeccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCceeecccccee-ccCCCCC
Q 009236 172 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN 250 (539)
Q Consensus 172 l~~l~~~~y~~~~~~~~~~~l~~~~Rin~Gg~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~ 250 (539)
|||||+++|+.... ..+.+|++++|+||||.... +||++|++ ||+|.++. ....|..+++...+. .....++
T Consensus 158 l~~lp~~ly~~~~~-~~s~~L~~~~R~n~G~~~~~--iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~ 230 (347)
T PF12819_consen 158 LRPLPDSLYPDTDA-NSSQALETVYRLNVGGSSSF--IRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY 230 (347)
T ss_pred EEECCccceecccc-CCCceeEEEEeecCCCcccc--cCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence 99999999953211 35789999999999997532 89999998 99999763 235566777766665 3445678
Q ss_pred CChHHHHHHhhccCCCC--CCcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeecCcceeeecCCceee
Q 009236 251 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA 328 (539)
Q Consensus 251 ~~P~~Vy~TAr~~~~~~--~~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~ 328 (539)
.+|.+|||||+++.+.+ .+++|.| ++++..|+||||||||+......++|+|+|+|||+.+.+++++.. .+....+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~ 308 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP 308 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence 89999999999976654 6789988 889999999999999987555666899999999999887555422 2223345
Q ss_pred EEEEEEeeecC-eeEEEEEccCCCc--hhhhhhhhhhhh
Q 009236 329 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI 364 (539)
Q Consensus 329 ~~~~~~v~~~~-~~l~i~~~p~~~~--~~~lnalei~~~ 364 (539)
++.++.+.+.+ +.++|+++|+.++ +|+|||+|||++
T Consensus 309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 66677776654 4689999987654 899999999974
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.85 E-value=1.9e-19 Score=198.82 Aligned_cols=89 Identities=30% Similarity=0.555 Sum_probs=81.4
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCC-CCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL-TALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l-~~L~~L~L 499 (539)
.|+.|+|++|.|.|.+|..++.|++|+.|+|++|.++|.+|..+++|++|+.|+|++|+|+|.+|..++.+ .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 37889999999999999999999999999999999999999999999999999999999999999998874 47789999
Q ss_pred cCCcCCccCC
Q 009236 500 NGNTLSGRVP 509 (539)
Q Consensus 500 ~~N~l~g~iP 509 (539)
.+|.....+|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 9997655455
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.81 E-value=1.6e-20 Score=173.97 Aligned_cols=142 Identities=27% Similarity=0.401 Sum_probs=84.7
Q ss_pred EeeccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCceeecc---cc-ceeccCCCCCCChHHHHHHhhccCCCCCCc
Q 009236 195 ATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRST---ES-SIKQASKAPNFYPEALYQTALVSTDSQPDL 270 (539)
Q Consensus 195 ~~Rin~Gg~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t---~~-~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l 270 (539)
++||||||+.. .+.. +..|.+|..+....+..... .. ............+..+|||+|++.. ++
T Consensus 2 ~~~IN~Gg~~~---~~~~------g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f 69 (174)
T PF11721_consen 2 VLRINAGGPAY---TDSS------GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SF 69 (174)
T ss_dssp EEEEEETSSSE---EETT------TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SE
T ss_pred EEEEECCCCcc---cCCC------CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ce
Confidence 68999999753 2333 55666666433333311000 00 0001111223346789999999754 39
Q ss_pred EEEEecCCCCcEEEEEEeeeccCCC----CCCceEEEEEEECCeeeecCcceeeecCCceeeEEEEE-EeeecCeeEEEE
Q 009236 271 QYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTVT 345 (539)
Q Consensus 271 ~~~f~v~~~~~y~v~LhFaei~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~v~~~~~~l~i~ 345 (539)
+|.+|+.++|.|.|+|||||++... ...++|+|||+|||+.++++|||.+.+|+..++.++.+ .+.++++.|+|.
T Consensus 70 ~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~ 149 (174)
T PF11721_consen 70 SYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQ 149 (174)
T ss_dssp EEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETT
T ss_pred EEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEE
Confidence 9999977889999999999997643 34889999999999999999999999987655666655 778889999999
Q ss_pred Ecc
Q 009236 346 LHP 348 (539)
Q Consensus 346 ~~p 348 (539)
|.+
T Consensus 150 f~~ 152 (174)
T PF11721_consen 150 FVW 152 (174)
T ss_dssp EEE
T ss_pred EEe
Confidence 983
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.57 E-value=5.3e-15 Score=137.09 Aligned_cols=134 Identities=28% Similarity=0.446 Sum_probs=85.4
Q ss_pred EEEccCCCCCCcCCCCCceeeccCcccCCccc---c-------cCC----C-CCCCCCcceeeccCCCCCCCceEEeeec
Q 009236 28 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPA---N-------ATR----P-SFITPPLKTLRYFPLSEGPENCYIINRV 92 (539)
Q Consensus 28 ~~IdCG~~~~~~~~~~~~~w~~D~~~~~~~~~---~-------~~~----~-~~~~~~y~t~R~F~~~~g~~~~Y~~~~~ 92 (539)
++||||++.- ++..|..|.+|..+.+|... . ... . ....++|+|.|+-+. .+.|.||..
T Consensus 3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~ 76 (174)
T PF11721_consen 3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV 76 (174)
T ss_dssp EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence 6899999763 56689999999988755430 0 000 0 012258999999763 489999988
Q ss_pred CCceeEEEEEEecccCCC----C-CCCCcEEEEEcCeEEEEEecCCCCC------ccceEEEE-EEEecCCeEEEEEee-
Q 009236 93 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSDH------DDRAFAEA-LVFLRDGTVSICFHS- 159 (539)
Q Consensus 93 ~~g~ylvRl~F~~~~y~~----~-~~~~~F~v~~~~~~~~~v~~~f~~~------~~~~~~E~-i~~~~~~~l~v~f~~- 159 (539)
++|.|.|||||.+..+.. . ...+.|||+++| .+|+.+|+.. ..++++++ -+.++++.|.|+|..
T Consensus 77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~ 153 (174)
T PF11721_consen 77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA 153 (174)
T ss_dssp S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence 899999999999875543 1 346789999999 8899888751 23577777 456789999999985
Q ss_pred ----------cCCCCCeEeeE
Q 009236 160 ----------TGHGDPAILSL 170 (539)
Q Consensus 160 ----------~~~~~pfIsai 170 (539)
...+.|.||||
T Consensus 154 ~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 154 GKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp --SEEEEEEESSSSSSSEEEE
T ss_pred CCCcEEeeccccCCCcEEeeC
Confidence 44567888887
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=4.3e-13 Score=157.09 Aligned_cols=138 Identities=33% Similarity=0.580 Sum_probs=98.5
Q ss_pred CCchHHHHHHHHHHhhcCCCCC--CCCC-CCCCCCCCCCCcccccccCCCCceeEEEEEEccCCCCcccCcchhccCCCC
Q 009236 370 KTLPEEVRALQVLKNSLDLPHR--FGWN-GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHL 446 (539)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~~~~~--~~W~-~~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L 446 (539)
-..++|..+|+++|+.+..+.. .+|+ .+.| |.|.|+.|+.. .+|+.|+|++|+++|.+++.+..|++|
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L 95 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYI 95 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCC
Confidence 3466899999999999865432 4786 3445 37999999742 258888888888888888888888888
Q ss_pred CeEEcccCccCccCccccc-CCCCCcEEeccCCcC----------------------CccCchhhcCCCCCCEEeccCCc
Q 009236 447 QSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFF----------------------NGSIPESLGQLTALRRLNLNGNT 503 (539)
Q Consensus 447 ~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l----------------------~g~iP~~l~~l~~L~~L~L~~N~ 503 (539)
+.|+|++|.++|.+|..+. .+++|+.|+|++|++ ++.+|..++++++|++|+|++|.
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 8888888888877776544 555555555555554 45556666667777777777777
Q ss_pred CCccCCccccccc
Q 009236 504 LSGRVPAALGGRL 516 (539)
Q Consensus 504 l~g~iP~~l~~l~ 516 (539)
+.+.+|..++++.
T Consensus 176 l~~~~p~~~~~l~ 188 (968)
T PLN00113 176 LVGKIPNSLTNLT 188 (968)
T ss_pred ccccCChhhhhCc
Confidence 7777776665543
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.02 E-value=3.5e-10 Score=132.65 Aligned_cols=106 Identities=32% Similarity=0.540 Sum_probs=85.9
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++.+|..+.+|++|+.|+|++|.+.|.+|..+..|++|+.|+|++|.++|.+|..+..+++|+.|+|+
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 47788888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCCccCCccccccc---cccccccccc
Q 009236 501 GNTLSGRVPAALGGRL---LHRASFKSMW 526 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~---~~~l~~~~~~ 526 (539)
+|+++|.+|..+.++. .++++.|++.
T Consensus 556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CCcccccCChhHhcCcccCEEeccCCcce
Confidence 8888888888776653 3445544443
No 8
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.92 E-value=6.4e-09 Score=107.20 Aligned_cols=155 Identities=24% Similarity=0.321 Sum_probs=99.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCceeeccccceeccCCCCCCChHHHHHHhhccCCCCCCcEEEEecC
Q 009236 198 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD 277 (539)
Q Consensus 198 in~Gg~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~~f~v~ 277 (539)
||||+..... .|.|+.- +|.|.+|..+-..+ .+..|....+.....+...|+|||.+.... .-.|+|++.
T Consensus 1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g-----~~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~ 70 (347)
T PF12819_consen 1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTG-----KSGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT 70 (347)
T ss_pred CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCC-----CccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence 6999975321 2444443 88899887533211 112221111111124556899999987432 378999986
Q ss_pred --CCCcEEEEEEeeeccCCCCC----CceEEEEEEECCeeeecCcceeeecCCceeeEEEEEEeeec-CeeEEEEEccCC
Q 009236 278 --PNRNYSIWLHFAEIDNTITG----VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG 350 (539)
Q Consensus 278 --~~~~y~v~LhFaei~~~~~~----~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~-~~~l~i~~~p~~ 350 (539)
.+++|+|||||.-..+.... ...-.|+++++...+. .++... . ...++++++.+.+. ++.|.|.|.|..
T Consensus 71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~-~--~~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSN-S--PSSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeE-EEEecC-C--CcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 45699999999976542111 1235699999987652 222211 1 11468889888888 688999999988
Q ss_pred C-chhhhhhhhhhhhhh
Q 009236 351 G-SHAIINAIEVFEIIA 366 (539)
Q Consensus 351 ~-~~~~lnalei~~~~~ 366 (539)
. ..|+|||||+..+-.
T Consensus 147 ~g~~pFIsaiEl~~lp~ 163 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPD 163 (347)
T ss_pred CCCCCceeEEEEEECCc
Confidence 4 459999999988754
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.81 E-value=6.4e-10 Score=99.40 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=16.8
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCcc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSI 456 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l 456 (539)
++.|++.-|.+. .+|..|+.++.|+.|||..|++
T Consensus 81 lr~lnvgmnrl~-~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 81 LRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhheecchhhhh-cCccccCCCchhhhhhcccccc
Confidence 344444444443 3455555555555555555444
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.71 E-value=1.2e-09 Score=97.63 Aligned_cols=81 Identities=33% Similarity=0.616 Sum_probs=49.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|-|++|.++ .+|+.+..|.+|+.|++++|++. .+|.+++.|+.|+.|+++-|++. .+|..|+.++.|++|+|..
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccc
Confidence 555666666665 45556666666666666666665 55666666666666666666665 5566666666666666655
Q ss_pred CcCC
Q 009236 502 NTLS 505 (539)
Q Consensus 502 N~l~ 505 (539)
|+++
T Consensus 112 nnl~ 115 (264)
T KOG0617|consen 112 NNLN 115 (264)
T ss_pred cccc
Confidence 5553
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=5.7e-08 Score=73.58 Aligned_cols=61 Identities=36% Similarity=0.572 Sum_probs=45.1
Q ss_pred CCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcC
Q 009236 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504 (539)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 504 (539)
++|+.|+|++|.++..-+..|..+++|+.|+|++|.++..-|..|.++++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577777887777755556777788888888888888755556777888888888887764
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.50 E-value=5.3e-08 Score=97.75 Aligned_cols=81 Identities=33% Similarity=0.637 Sum_probs=58.2
Q ss_pred cCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCC----------------------ccCch-hhcCC
Q 009236 435 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN----------------------GSIPE-SLGQL 491 (539)
Q Consensus 435 ~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~----------------------g~iP~-~l~~l 491 (539)
.+|..++.+++|..|+|++|-+. .+|.+++.+..|+.||||.|+|. |.++. .+++|
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 45666777777777777777776 67777777777777777777765 23333 25678
Q ss_pred CCCCEEeccCCcCCccCCcccccccc
Q 009236 492 TALRRLNLNGNTLSGRVPAALGGRLL 517 (539)
Q Consensus 492 ~~L~~L~L~~N~l~g~iP~~l~~l~~ 517 (539)
.+|..|||.+|.+. .||+.++++..
T Consensus 505 ~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred hhcceeccCCCchh-hCChhhccccc
Confidence 88888888888887 78888887754
No 13
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.33 E-value=5.7e-08 Score=101.45 Aligned_cols=101 Identities=34% Similarity=0.528 Sum_probs=63.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|+.|.++ .+|..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|++..
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 455666666665 4555566554 566666666666 56666666666666666666666 5666666666666666666
Q ss_pred CcCCccCCcccccccccccccccccc
Q 009236 502 NTLSGRVPAALGGRLLHRASFKSMWY 527 (539)
Q Consensus 502 N~l~g~iP~~l~~l~~~~l~~~~~~~ 527 (539)
|++. .+|+++..|++.+++|..|.+
T Consensus 199 n~l~-~lp~El~~LpLi~lDfScNki 223 (722)
T KOG0532|consen 199 NHLE-DLPEELCSLPLIRLDFSCNKI 223 (722)
T ss_pred hhhh-hCCHHHhCCceeeeecccCce
Confidence 6666 566666666665555555543
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.33 E-value=8.1e-08 Score=100.50 Aligned_cols=89 Identities=25% Similarity=0.313 Sum_probs=49.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|+.|.|...-++.+.-.++|+.|+|++|+++..-+..|.-|..|+.|+|++|.++..--..|..|++|+.|+|++
T Consensus 295 L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 44455555555555555555555555555555555544444555555555555555555533333455666777777777
Q ss_pred CcCCccCCc
Q 009236 502 NTLSGRVPA 510 (539)
Q Consensus 502 N~l~g~iP~ 510 (539)
|.+++.|-+
T Consensus 375 N~ls~~IED 383 (873)
T KOG4194|consen 375 NELSWCIED 383 (873)
T ss_pred CeEEEEEec
Confidence 777666654
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=2.9e-07 Score=69.68 Aligned_cols=59 Identities=31% Similarity=0.548 Sum_probs=54.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 480 (539)
|+.|+|++|+|+..-+..|.++++|++|+|++|.+....|..|..|++|+.|+|++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 78899999999977778899999999999999999987778999999999999999975
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.32 E-value=7.8e-08 Score=96.61 Aligned_cols=91 Identities=32% Similarity=0.503 Sum_probs=63.2
Q ss_pred EEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCccccc-CCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
.-|+|..|.+. .+| +|.++..|..|+++.|.+. .+|.+.. .|.+|.+|||..|++. +.|+++.-+.+|+.|||++
T Consensus 209 ~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 209 ELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccC
Confidence 33445555554 233 4555555555555555555 5555544 6788888888888888 8888888888889999999
Q ss_pred CcCCccCCccccccccc
Q 009236 502 NTLSGRVPAALGGRLLH 518 (539)
Q Consensus 502 N~l~g~iP~~l~~l~~~ 518 (539)
|.++ .+|.++|++.+.
T Consensus 285 N~is-~Lp~sLgnlhL~ 300 (565)
T KOG0472|consen 285 NDIS-SLPYSLGNLHLK 300 (565)
T ss_pred Cccc-cCCcccccceee
Confidence 8888 678888887443
No 17
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=4.7e-07 Score=83.63 Aligned_cols=80 Identities=31% Similarity=0.476 Sum_probs=24.4
Q ss_pred EEEEEEccCCCCcccCcchhc-cCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhh-cCCCCCCEEe
Q 009236 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~ 498 (539)
.++.|+|++|.|+- + ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 35677888887763 2 2454 4677888888888877 343 4667778888888888887 454444 3577788888
Q ss_pred ccCCcCC
Q 009236 499 LNGNTLS 505 (539)
Q Consensus 499 L~~N~l~ 505 (539)
|++|++.
T Consensus 95 L~~N~I~ 101 (175)
T PF14580_consen 95 LSNNKIS 101 (175)
T ss_dssp -TTS---
T ss_pred CcCCcCC
Confidence 8888775
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.22 E-value=2.2e-07 Score=97.85 Aligned_cols=91 Identities=31% Similarity=0.487 Sum_probs=63.7
Q ss_pred EEEEEccCCCCcc-cCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchh-hcCCCCCCEEec
Q 009236 422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNL 499 (539)
Q Consensus 422 l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~L 499 (539)
++++.+..|+|.. -+|+.|..|..|+.||||+|++. ++|..+..-+++-+|+||+|++. .||.. +-+|+.|-.|+|
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcc
Confidence 5566667777653 36777777777777777777777 77777777777777777777777 66653 456777777777
Q ss_pred cCCcCCccCCcccccc
Q 009236 500 NGNTLSGRVPAALGGR 515 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l 515 (539)
++|++. .+|+.+..|
T Consensus 158 S~NrLe-~LPPQ~RRL 172 (1255)
T KOG0444|consen 158 SNNRLE-MLPPQIRRL 172 (1255)
T ss_pred ccchhh-hcCHHHHHH
Confidence 777777 666655443
No 19
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.22 E-value=1.2e-06 Score=84.04 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=81.4
Q ss_pred hHHHHHHhhccCCCCCCcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEEC-CeeeecCcceeeecCCceee--E
Q 009236 253 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L 329 (539)
Q Consensus 253 P~~Vy~TAr~~~~~~~~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~ 329 (539)
-..+|||+|+... .+.|..+++..|+|-+.|.|||+.. +..+..+|||-+| +..+.+++|++...|+...+ .
T Consensus 107 d~ily~ter~nee---tFgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe 181 (355)
T KOG3593|consen 107 DIILYQTERYNEE---TFGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE 181 (355)
T ss_pred hhhhhhhcccchh---hhcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence 3468999999644 3778888888899999999999975 4578999999999 99999999999887744222 2
Q ss_pred EEEEE-----------ee-ecCeeEEEEEccCCCchhhhhhhhhhhh
Q 009236 330 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI 364 (539)
Q Consensus 330 ~~~~~-----------v~-~~~~~l~i~~~p~~~~~~~lnalei~~~ 364 (539)
++... +. ...|+++|+|.+..-.+|.+||..|+..
T Consensus 182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g 228 (355)
T KOG3593|consen 182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG 228 (355)
T ss_pred eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence 22211 11 2246789999887766799999888754
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.21 E-value=2.1e-07 Score=97.46 Aligned_cols=103 Identities=24% Similarity=0.377 Sum_probs=65.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcc---cccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEE
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS---SLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL 497 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L 497 (539)
++.|+|++|.+.-.-...|..|++|+.|||++|.+++.|.+ .+..|++|+.|+|.+|++. .|| ..+.+|..|++|
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~L 421 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHL 421 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCccccee
Confidence 44555555555544444555666666666666666665553 2455667777777777776 444 366777777777
Q ss_pred eccCCcCCccCCcccccccccccccccc
Q 009236 498 NLNGNTLSGRVPAALGGRLLHRASFKSM 525 (539)
Q Consensus 498 ~L~~N~l~g~iP~~l~~l~~~~l~~~~~ 525 (539)
+|.+|-+...-|.+|..+.+.++-+|..
T Consensus 422 dL~~NaiaSIq~nAFe~m~Lk~Lv~nSs 449 (873)
T KOG4194|consen 422 DLGDNAIASIQPNAFEPMELKELVMNSS 449 (873)
T ss_pred cCCCCcceeecccccccchhhhhhhccc
Confidence 7777777766677777766665555554
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.10 E-value=2.4e-07 Score=97.55 Aligned_cols=102 Identities=26% Similarity=0.421 Sum_probs=83.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccC-ccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
+|++|+|+.|+|+ .+|..+++|++|+.|.+.+|.++ .-||..+++|..|+++.+++|.+. .+|+.++.|.+|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 4667888888887 68999999999999999999886 358999999999999999999998 88999999999999999
Q ss_pred cCCcCCccCCcccccc---cccccccccc
Q 009236 500 NGNTLSGRVPAALGGR---LLHRASFKSM 525 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l---~~~~l~~~~~ 525 (539)
+.|++- .+|+.+--| ..+++.-|.+
T Consensus 347 ~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccccee-echhhhhhcCCcceeeccCCcC
Confidence 999987 788876433 3444444443
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.03 E-value=9.8e-07 Score=97.11 Aligned_cols=100 Identities=31% Similarity=0.424 Sum_probs=83.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
+|+.|+|++|.|...-...+.+|..|+.|+||+|.|+ .+|..+..|..|++|...+|++. .+| ++.+++.|+++||+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 5889999999998655567999999999999999999 89999999999999999999998 888 88999999999999
Q ss_pred CCcCC-ccCCcccc--cccccccccc
Q 009236 501 GNTLS-GRVPAALG--GRLLHRASFK 523 (539)
Q Consensus 501 ~N~l~-g~iP~~l~--~l~~~~l~~~ 523 (539)
.|+|+ +.+|.... +|..++++-|
T Consensus 461 ~N~L~~~~l~~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALPSPNLKYLDLSGN 486 (1081)
T ss_pred cchhhhhhhhhhCCCcccceeeccCC
Confidence 99986 44554443 3433444433
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.88 E-value=2.5e-05 Score=87.73 Aligned_cols=77 Identities=25% Similarity=0.356 Sum_probs=37.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|+|++ +|... .+|+.|++++|.++ .+|.. +.+|+.|+|++|+|+ .+|.. .++|+.|+|+
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp---~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVS 410 (788)
T ss_pred ccceEecCCCccCC-CCCCC---cccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEcc
Confidence 46677777777764 33321 23444444444444 23322 134555555555555 34432 2345555555
Q ss_pred CCcCCccCCc
Q 009236 501 GNTLSGRVPA 510 (539)
Q Consensus 501 ~N~l~g~iP~ 510 (539)
+|+|+ .+|.
T Consensus 411 ~N~Ls-sIP~ 419 (788)
T PRK15387 411 GNRLT-SLPM 419 (788)
T ss_pred CCcCC-CCCc
Confidence 55554 3443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.87 E-value=2.1e-06 Score=86.47 Aligned_cols=108 Identities=27% Similarity=0.341 Sum_probs=85.0
Q ss_pred cccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEec-cCCcCCc
Q 009236 409 ADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL-SYNFFNG 482 (539)
Q Consensus 409 v~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L-s~N~l~g 482 (539)
|.|+..+.. -+...++|+|..|+|+..-|..|..+++|+.||||+|.++-.-|..|..|.+|..|-+ ++|+++
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~- 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT- 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence 677654321 1234679999999999776778999999999999999999889999999998877655 559998
Q ss_pred cCc-hhhcCCCCCCEEeccCCcCCccCCcccccccc
Q 009236 483 SIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (539)
Q Consensus 483 ~iP-~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~ 517 (539)
.+| ..|++|.+|+.|.+.-|++.-.....|..++.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~ 165 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPS 165 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhh
Confidence 666 47889999999999999988555555555543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.86 E-value=1.2e-05 Score=74.37 Aligned_cols=82 Identities=32% Similarity=0.470 Sum_probs=40.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccc-cCCCCCcEEeccCCcCCcc-CchhhcCCCCCCEEe
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~ 498 (539)
.++.|+|++|.|+.. +.+..|+.|+.|+|++|.++ .+...+ ..+++|+.|+|++|++... --..+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 43 KLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp T--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred CCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 388999999999853 35788999999999999999 455445 4689999999999999731 114677899999999
Q ss_pred ccCCcCC
Q 009236 499 LNGNTLS 505 (539)
Q Consensus 499 L~~N~l~ 505 (539)
|.+|.++
T Consensus 120 L~~NPv~ 126 (175)
T PF14580_consen 120 LEGNPVC 126 (175)
T ss_dssp -TT-GGG
T ss_pred ccCCccc
Confidence 9999987
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.85 E-value=9.5e-06 Score=91.09 Aligned_cols=86 Identities=30% Similarity=0.372 Sum_probs=69.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.|++ +|.. .++|+.|+|++|.|+ .+|.. +.+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 36788888888874 5543 357888999999988 46754 346788999999998 899999999999999999
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|+|+|.+|..+..+
T Consensus 454 ~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 454 GNPLSERTLQALREI 468 (788)
T ss_pred CCCCCchHHHHHHHH
Confidence 999999888877444
No 27
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.7e-05 Score=55.57 Aligned_cols=36 Identities=44% Similarity=0.635 Sum_probs=20.2
Q ss_pred CCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCC
Q 009236 469 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 469 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
+|+.|+|++|+++ .+|..+++|++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 45555566666666666666655
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.80 E-value=5.7e-06 Score=91.31 Aligned_cols=92 Identities=33% Similarity=0.505 Sum_probs=84.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.+.+|+|++|.++ ..|..+..+.+|+.|+++.|.+. .+|.++.++.+|++|.|..|.+. .+|.++..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4889999999876 68889999999999999999998 88999999999999999999999 999999999999999999
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
.|+|. .+|..+..+.
T Consensus 123 ~N~f~-~~Pl~i~~lt 137 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLT 137 (1081)
T ss_pred hhccC-CCchhHHhhh
Confidence 99998 8887776554
No 29
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=5.8e-06 Score=71.79 Aligned_cols=88 Identities=23% Similarity=0.410 Sum_probs=71.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
+++.++|++|.+...-+.--.+++.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|+-+..|.+|..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 5888899999988543333345568899999999998 88888999999999999999998 778878788888899998
Q ss_pred CCcCCccCCcc
Q 009236 501 GNTLSGRVPAA 511 (539)
Q Consensus 501 ~N~l~g~iP~~ 511 (539)
+|.+. +||-.
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 88877 67754
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.72 E-value=6e-05 Score=85.01 Aligned_cols=81 Identities=32% Similarity=0.486 Sum_probs=42.3
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|+|+ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|+|++|+++ .+|..+. .+|+.|+|++
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 344444444444 2333222 24555555555555 4444432 35666666666666 4565443 3677777777
Q ss_pred CcCCccCCccc
Q 009236 502 NTLSGRVPAAL 512 (539)
Q Consensus 502 N~l~g~iP~~l 512 (539)
|+|+ .+|..+
T Consensus 293 N~Lt-~LP~~l 302 (754)
T PRK15370 293 NSIR-TLPAHL 302 (754)
T ss_pred Cccc-cCcccc
Confidence 7766 355433
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.71 E-value=6.5e-05 Score=89.68 Aligned_cols=92 Identities=26% Similarity=0.304 Sum_probs=51.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|+++...+.+| .++.+++|+.|+|++|.....+|..++.|++|+.|+|++|..-+.+|..+ ++++|+.|+|++
T Consensus 636 Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred CCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 5556666554444444 35556666666666655555666666666666666666654444555544 455666666665
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|...+.+|....++
T Consensus 714 c~~L~~~p~~~~nL 727 (1153)
T PLN03210 714 CSRLKSFPDISTNI 727 (1153)
T ss_pred CCCccccccccCCc
Confidence 54444444433333
No 32
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=4e-05 Score=53.76 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=29.2
Q ss_pred CCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCC
Q 009236 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (539)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 481 (539)
++|++|+|++|.++ .+|..+++|++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 67777888888888888888887
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.65 E-value=1.7e-05 Score=80.03 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=54.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
+++.|+|++|.|++.-+..|..+.+|+.|.|..|++.-.-...|..+..|+.|+|.+|+++-.-|..|..+.+|..|+|-
T Consensus 275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL 354 (498)
T ss_pred cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence 46666666666666666666666666666666666654444455666666666666666666666666666666666666
Q ss_pred CCcC
Q 009236 501 GNTL 504 (539)
Q Consensus 501 ~N~l 504 (539)
.|.+
T Consensus 355 ~Np~ 358 (498)
T KOG4237|consen 355 SNPF 358 (498)
T ss_pred cCcc
Confidence 6655
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.61 E-value=3.4e-05 Score=81.23 Aligned_cols=86 Identities=36% Similarity=0.649 Sum_probs=49.1
Q ss_pred EEEEEccCCCCcccCcchhccCC-CCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|++.+|.++ .+++....+. +|+.|++++|.+. .+|..++.++.|+.|++++|+++ .+|...+.++.|+.|+++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 455556665555 3444555553 5666666666665 44455556666666666666665 555554455566666666
Q ss_pred CCcCCccCCcc
Q 009236 501 GNTLSGRVPAA 511 (539)
Q Consensus 501 ~N~l~g~iP~~ 511 (539)
+|+++ .+|..
T Consensus 195 ~N~i~-~l~~~ 204 (394)
T COG4886 195 GNKIS-DLPPE 204 (394)
T ss_pred CCccc-cCchh
Confidence 66665 55554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.61 E-value=1.5e-05 Score=77.70 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
+.++.|+++.|+|... ..+..|.+|+.||||+|.++ .+...-.+|.+++.|.|+.|.+. . -..+++|-+|..|++
T Consensus 307 Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 307 PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDL 381 (490)
T ss_pred cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccc
Confidence 3466677777776532 22666677777777777766 44444445666777777777665 2 234566677788888
Q ss_pred cCCcCCccCC--ccccccc
Q 009236 500 NGNTLSGRVP--AALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP--~~l~~l~ 516 (539)
++|++. .+- ..+|+|+
T Consensus 382 ~~N~Ie-~ldeV~~IG~LP 399 (490)
T KOG1259|consen 382 SSNQIE-ELDEVNHIGNLP 399 (490)
T ss_pred cccchh-hHHHhccccccc
Confidence 888775 222 2355554
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.56 E-value=2.7e-05 Score=79.06 Aligned_cols=86 Identities=30% Similarity=0.469 Sum_probs=60.0
Q ss_pred EEEEEEccCCCCcc----cCcchhccC-CCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCcc----Cchh
Q 009236 421 VIDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES 487 (539)
Q Consensus 421 ~l~~L~L~~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~ 487 (539)
.++.|+|++|.+.+ .+...+..+ ++|+.|+|++|.+++. ++..+..+.+|+.|+|++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37788888888773 333455666 7888888888888743 334566677888888888888742 3344
Q ss_pred hcCCCCCCEEeccCCcCCc
Q 009236 488 LGQLTALRRLNLNGNTLSG 506 (539)
Q Consensus 488 l~~l~~L~~L~L~~N~l~g 506 (539)
+..+++|+.|+|++|.+++
T Consensus 189 l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHhCCCCCEEeccCCccCh
Confidence 5566788888888888763
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.52 E-value=3.2e-05 Score=78.50 Aligned_cols=85 Identities=26% Similarity=0.414 Sum_probs=58.8
Q ss_pred EEEEEEccCCCCccc----CcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCccCchhhc---
Q 009236 421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLG--- 489 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~--- 489 (539)
.++.|+|++|.+++. ++..+..+++|+.|+|++|.+.+. ++..+..+++|+.|++++|.+++.....+.
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 477888888888742 344556667888888888887633 344566778888888888888753333322
Q ss_pred --CCCCCCEEeccCCcCC
Q 009236 490 --QLTALRRLNLNGNTLS 505 (539)
Q Consensus 490 --~l~~L~~L~L~~N~l~ 505 (539)
..+.|+.|++++|.++
T Consensus 246 ~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 246 LSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hccCCCceEEEccCCCCC
Confidence 2367888888888876
No 38
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.49 E-value=0.00021 Score=85.38 Aligned_cols=90 Identities=26% Similarity=0.323 Sum_probs=78.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|+++.+. .++..+..|++|+.|+|+++.....+| .++.+++|+.|+|++|.....+|..+++|++|+.|+|+
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 4788999999987 577888999999999999887666888 48899999999999988778999999999999999999
Q ss_pred CCcCCccCCccc
Q 009236 501 GNTLSGRVPAAL 512 (539)
Q Consensus 501 ~N~l~g~iP~~l 512 (539)
+|...+.+|..+
T Consensus 690 ~c~~L~~Lp~~i 701 (1153)
T PLN03210 690 RCENLEILPTGI 701 (1153)
T ss_pred CCCCcCccCCcC
Confidence 986666888754
No 39
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.1e-05 Score=70.02 Aligned_cols=90 Identities=29% Similarity=0.397 Sum_probs=73.2
Q ss_pred EEEEEccCCCCcccCc---chhccCCCCCeEEcccCccCccCcccccCC-CCCcEEeccCCcCCccCchhhcCCCCCCEE
Q 009236 422 IDGLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGTI-ASLEVLDLSYNFFNGSIPESLGQLTALRRL 497 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p---~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 497 (539)
+..++|+++.|- .++ ..+.+..+|+..+|++|.|. .+|+.|... +.++.|+|++|+++ .+|.++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 446777777764 334 45666777888899999999 677776654 58999999999999 999999999999999
Q ss_pred eccCCcCCccCCcccccc
Q 009236 498 NLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 498 ~L~~N~l~g~iP~~l~~l 515 (539)
+++.|.|. ..|..+..|
T Consensus 106 Nl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred ccccCccc-cchHHHHHH
Confidence 99999998 677776655
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.49 E-value=0.00014 Score=82.02 Aligned_cols=81 Identities=27% Similarity=0.467 Sum_probs=57.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+. .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|+|++|+|+ .+|..+. ++|+.|+|+
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 3677888888877 5666554 47888888888887 5676553 47888888888887 4665443 467788888
Q ss_pred CCcCCccCCcc
Q 009236 501 GNTLSGRVPAA 511 (539)
Q Consensus 501 ~N~l~g~iP~~ 511 (539)
+|+++ .+|..
T Consensus 313 ~N~Lt-~LP~~ 322 (754)
T PRK15370 313 SNSLT-ALPET 322 (754)
T ss_pred CCccc-cCCcc
Confidence 88887 45543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.37 E-value=6.1e-05 Score=73.50 Aligned_cols=80 Identities=24% Similarity=0.342 Sum_probs=62.4
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++++||++|.|+ .+..++.-++.++.|+||.|.+. .+- .+..|.+|+.||||+|.++ ++-..-.+|-+.+.|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 677888888887 45666777888888999998887 333 3778888889999988887 5555556677888888888
Q ss_pred CcCC
Q 009236 502 NTLS 505 (539)
Q Consensus 502 N~l~ 505 (539)
|.+.
T Consensus 362 N~iE 365 (490)
T KOG1259|consen 362 NKIE 365 (490)
T ss_pred hhHh
Confidence 8875
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.36 E-value=3.3e-05 Score=81.25 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=55.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
+..|+.+.|.+. .+|+.++.|.+|+.|++..|++. .+|.++..| .|..||+|.|+++ .||-.|.+|+.|++|-|.+
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeecc
Confidence 445555555554 45566666666666666666665 556666633 4667777777777 6777777777777777777
Q ss_pred CcCCccCCccc
Q 009236 502 NTLSGRVPAAL 512 (539)
Q Consensus 502 N~l~g~iP~~l 512 (539)
|.|. +.|..+
T Consensus 244 NPLq-SPPAqI 253 (722)
T KOG0532|consen 244 NPLQ-SPPAQI 253 (722)
T ss_pred CCCC-CChHHH
Confidence 7776 555544
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.21 E-value=0.00014 Score=83.45 Aligned_cols=92 Identities=32% Similarity=0.380 Sum_probs=73.9
Q ss_pred EEEEEEccCCC--CcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEe
Q 009236 421 VIDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~--l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 498 (539)
.+++|-+..|. +.-.....|..|+.|+.|||++|.--+.+|..++.|-+|++|+|+...++ .+|..+++|.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 47778888876 33223344777999999999998888899999999999999999999998 8999999999999999
Q ss_pred ccCCcCCccCCcccc
Q 009236 499 LNGNTLSGRVPAALG 513 (539)
Q Consensus 499 L~~N~l~g~iP~~l~ 513 (539)
+..+.....+|..+.
T Consensus 625 l~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 625 LEVTGRLESIPGILL 639 (889)
T ss_pred cccccccccccchhh
Confidence 998876545554433
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=97.11 E-value=0.00061 Score=47.47 Aligned_cols=35 Identities=43% Similarity=0.935 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhcCC-CC--CCCCCC----CCCCCCCCCCcccccc
Q 009236 373 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ 412 (539)
Q Consensus 373 ~~~~~aL~~~k~~~~~-~~--~~~W~~----~~C~~~~~~w~gv~C~ 412 (539)
++|++||++||+.+.. +. ..+|+. ++| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 5799999999999984 32 358974 344 69999995
No 45
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.97 E-value=0.00034 Score=73.65 Aligned_cols=79 Identities=30% Similarity=0.530 Sum_probs=53.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+++.|.+. .+|..+..|+.|+.|+++.|.+. .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 666777777766 34456677777777777777777 55655556677777777777776 6666655555566666666
Q ss_pred Cc
Q 009236 502 NT 503 (539)
Q Consensus 502 N~ 503 (539)
|.
T Consensus 219 N~ 220 (394)
T COG4886 219 NS 220 (394)
T ss_pred Cc
Confidence 64
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.77 E-value=0.00074 Score=77.58 Aligned_cols=83 Identities=33% Similarity=0.406 Sum_probs=74.9
Q ss_pred eEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
..++.|||++|.=-+.+|..++.|-+|++|+|+...+. .+|..+++|..|.+||+..+.....+|.-+..|++|++|.|
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 35889999998888899999999999999999999999 99999999999999999998877677777778999999998
Q ss_pred cCCc
Q 009236 500 NGNT 503 (539)
Q Consensus 500 ~~N~ 503 (539)
..-.
T Consensus 650 ~~s~ 653 (889)
T KOG4658|consen 650 PRSA 653 (889)
T ss_pred eccc
Confidence 7654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.61 E-value=0.00012 Score=79.21 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=61.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcc-cccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|+++.. ..+..|++|++|||+.|.|. .+|. ....|. |+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus 188 ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred Hhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 467889999988743 27888889999999999988 5552 223344 888999999887 32 45778899999999
Q ss_pred cCCcCCcc
Q 009236 500 NGNTLSGR 507 (539)
Q Consensus 500 ~~N~l~g~ 507 (539)
+.|.|++.
T Consensus 262 syNll~~h 269 (1096)
T KOG1859|consen 262 SYNLLSEH 269 (1096)
T ss_pred hHhhhhcc
Confidence 99988753
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.20 E-value=0.00065 Score=73.70 Aligned_cols=95 Identities=25% Similarity=0.351 Sum_probs=63.7
Q ss_pred EEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcC
Q 009236 425 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 504 (539)
Q Consensus 425 L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l 504 (539)
.+.+.|.|. .+..++.-|+.|+.|+|++|.+.. +. .+..|..|+.|||++|.+. .+|..-..-.+|+.|+|++|-+
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHH
Confidence 444445544 345667778889999999999983 33 7888999999999999998 6775322222489999999988
Q ss_pred CccCCcccccc---cccccccccc
Q 009236 505 SGRVPAALGGR---LLHRASFKSM 525 (539)
Q Consensus 505 ~g~iP~~l~~l---~~~~l~~~~~ 525 (539)
+ .+- .+.+| .-+++++|-+
T Consensus 245 ~-tL~-gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 245 T-TLR-GIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred H-hhh-hHHhhhhhhccchhHhhh
Confidence 7 222 23333 3445555544
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.91 E-value=0.0026 Score=67.49 Aligned_cols=82 Identities=30% Similarity=0.380 Sum_probs=65.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|..|.|.+. ...+..|++|++|+|++|.++... .+..|..|+.|++++|.++ .+ ..+..+..|+.++++
T Consensus 96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLS 170 (414)
T ss_pred ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhcccCC
Confidence 478899999998853 333778999999999999998443 4667788999999999998 33 345568899999999
Q ss_pred CCcCCcc
Q 009236 501 GNTLSGR 507 (539)
Q Consensus 501 ~N~l~g~ 507 (539)
.|.+...
T Consensus 171 ~n~i~~i 177 (414)
T KOG0531|consen 171 YNRIVDI 177 (414)
T ss_pred cchhhhh
Confidence 9998843
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.73 E-value=0.0049 Score=65.46 Aligned_cols=81 Identities=37% Similarity=0.554 Sum_probs=64.4
Q ss_pred eEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchh-hcCCCCCCEEe
Q 009236 420 WVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLN 498 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~ 498 (539)
..++.|+|++|.|+... .+..|+.|+.|++++|.+. .+. .+..+.+|+.+++++|.+. .+... +..+.+|+.+.
T Consensus 118 ~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELD 192 (414)
T ss_pred hcchheecccccccccc--chhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHh
Confidence 35889999999998543 3566777999999999998 333 4556889999999999998 44432 57888999999
Q ss_pred ccCCcCC
Q 009236 499 LNGNTLS 505 (539)
Q Consensus 499 L~~N~l~ 505 (539)
+.+|.+.
T Consensus 193 l~~n~i~ 199 (414)
T KOG0531|consen 193 LGGNSIR 199 (414)
T ss_pred ccCCchh
Confidence 9999886
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.0037 Score=64.31 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=48.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCc--ccccCCCCCcEEeccCCcCCc-cCchh-----hcCCCC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTA 493 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip--~~l~~l~~L~~L~Ls~N~l~g-~iP~~-----l~~l~~ 493 (539)
+..|.|..|...+........++.|+.|+|++|.+- ..+ ...+.++.|..|+++.+.+.. .+|+. ...+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 556666666533333333444666777777777765 222 345667777777777776652 12222 234677
Q ss_pred CCEEeccCCcCC
Q 009236 494 LRRLNLNGNTLS 505 (539)
Q Consensus 494 L~~L~L~~N~l~ 505 (539)
|+.|++..|++.
T Consensus 303 L~~L~i~~N~I~ 314 (505)
T KOG3207|consen 303 LEYLNISENNIR 314 (505)
T ss_pred ceeeecccCccc
Confidence 777777777774
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0042 Score=61.02 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=38.4
Q ss_pred CCcccccccCCCCceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCcc-CcccccCCCCCcEEeccCC
Q 009236 405 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 405 ~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N 478 (539)
.|.-|.|-... .++++.|+|+.|.|+..|...-..+.+|+.|-|.+..+... .-..+..++.++.|++|.|
T Consensus 85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 36666664322 23566777777776644332213455666666666665432 2233445556666666666
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.0056 Score=63.06 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=64.0
Q ss_pred eEEEEEEccCCCCccc-CcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc--hhhcCCCCCCE
Q 009236 420 WVIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRR 496 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~ 496 (539)
.+++.|.|+.|+|+-. +-..+..+++|+.|.|..|..-+.-.....-+..|+.|||++|++- ..+ ..++.|+.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 3688999999999832 3344567889999999999633333334455788999999999987 455 45778999999
Q ss_pred EeccCCcCC
Q 009236 497 LNLNGNTLS 505 (539)
Q Consensus 497 L~L~~N~l~ 505 (539)
|+++.+.++
T Consensus 276 Lnls~tgi~ 284 (505)
T KOG3207|consen 276 LNLSSTGIA 284 (505)
T ss_pred hhccccCcc
Confidence 999999886
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.01 E-value=0.028 Score=52.44 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=60.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc--hhhcCCCCCCEEec
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNL 499 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP--~~l~~l~~L~~L~L 499 (539)
...++|++|.+.- -..|..++.|..|.|.+|.++..-|.--..+++|+.|.|.+|.+. .+- +-+..+++|+.|.+
T Consensus 44 ~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 4578888888763 234667888899999999998555544455678999999999886 332 23567888999998
Q ss_pred cCCcCC
Q 009236 500 NGNTLS 505 (539)
Q Consensus 500 ~~N~l~ 505 (539)
-+|..+
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 888876
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.87 E-value=0.019 Score=55.53 Aligned_cols=80 Identities=28% Similarity=0.390 Sum_probs=53.5
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccC--ccCccCcccccCCCCCcEEeccCCcCCccCchh---hcCCCCCCE
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR 496 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~ 496 (539)
+..|++.+.+++.. ..+..|++|+.|.++.| +..+.++.....+++|++|+|+.|++. +++. +..+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence 34455555555421 23556778888888888 666777766777788888888888886 2333 345666777
Q ss_pred EeccCCcCC
Q 009236 497 LNLNGNTLS 505 (539)
Q Consensus 497 L~L~~N~l~ 505 (539)
|++.+|.-+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 888877655
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.011 Score=34.68 Aligned_cols=11 Identities=55% Similarity=0.504 Sum_probs=4.1
Q ss_pred cEEeccCCcCC
Q 009236 471 EVLDLSYNFFN 481 (539)
Q Consensus 471 ~~L~Ls~N~l~ 481 (539)
+.|||++|+|+
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.74 E-value=0.0099 Score=34.84 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=18.7
Q ss_pred CCCEEeccCCcCCccCCcccccc
Q 009236 493 ALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 493 ~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
+|++|+|++|+|+ .||++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5899999999999 899887764
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.43 E-value=0.029 Score=54.28 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=49.8
Q ss_pred CcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC--cCCccCchhhcCCCCCCEEeccCCcCC
Q 009236 436 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 436 ~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
+..-.-.+..|+.|.+.+..++ .+ ..+-.|++|+.|.+|.| ..++.++-....+++|++|+|++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3333344555666666666665 21 24557889999999999 777777777777899999999999986
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.011 Score=57.56 Aligned_cols=63 Identities=33% Similarity=0.386 Sum_probs=27.3
Q ss_pred cCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCch--hhcCCCCCCEEeccCCcCCcc
Q 009236 442 KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLNLNGNTLSGR 507 (539)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~L~~N~l~g~ 507 (539)
+|+.|+.|.||-|.++..- .+..|++|+.|.|..|.|. .+-+ -+.++++|+.|.|..|.-.|.
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccc
Confidence 3444444444444444211 2344444444555444443 2221 234444455555554444443
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.15 E-value=0.0057 Score=58.06 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=70.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
+++.|||+.|.+. .+...++.|+.|..|+|+.|.+. .+|..++++..+..+++-.|+++ ..|.+++.++.++.+++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 6888999999876 34556777888889999999988 78888999999999999999888 789999999999999999
Q ss_pred CCcCC
Q 009236 501 GNTLS 505 (539)
Q Consensus 501 ~N~l~ 505 (539)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 98865
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.06 E-value=0.32 Score=50.94 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=4.5
Q ss_pred CCCeEEcccC
Q 009236 445 HLQSINLSGN 454 (539)
Q Consensus 445 ~L~~L~Ls~N 454 (539)
+|+.|++++|
T Consensus 95 nLe~L~Ls~C 104 (426)
T PRK15386 95 GLEKLTVCHC 104 (426)
T ss_pred hhhheEccCc
Confidence 4444444444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.54 E-value=0.15 Score=57.44 Aligned_cols=87 Identities=23% Similarity=0.313 Sum_probs=61.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCc-cCcccccCCCCCcEEeccCCcCCccC--ch----hhcCCCC
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSI--PE----SLGQLTA 493 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~i--P~----~l~~l~~ 493 (539)
.|..||+++.+++-. ..+++|++|+.|.+.+=.+.. ..-..+-+|++|++||+|.......- .. .-..|+.
T Consensus 174 NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lpe 251 (699)
T KOG3665|consen 174 NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPE 251 (699)
T ss_pred ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcc
Confidence 478889998888744 668888888888877766542 22345678999999999987766321 11 1235889
Q ss_pred CCEEeccCCcCCccCC
Q 009236 494 LRRLNLNGNTLSGRVP 509 (539)
Q Consensus 494 L~~L~L~~N~l~g~iP 509 (539)
|+.||.++..+...+-
T Consensus 252 LrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 252 LRFLDCSGTDINEEIL 267 (699)
T ss_pred ccEEecCCcchhHHHH
Confidence 9999999888775443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.40 E-value=0.28 Score=45.95 Aligned_cols=61 Identities=26% Similarity=0.377 Sum_probs=48.4
Q ss_pred CCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCC
Q 009236 443 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 443 L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
+.+...+||+.|.+- .++ .|..+..|.+|.|++|+++-.-|.--.-+++|..|.|.+|++.
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 456788999999986 333 5778999999999999999544443345678999999999985
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.88 E-value=0.21 Score=48.78 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=19.0
Q ss_pred hccCCCCCeEEcccCccCccCcccc----cCCCCCcEEeccCCcC
Q 009236 440 ISKLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNFF 480 (539)
Q Consensus 440 l~~L~~L~~L~Ls~N~l~g~ip~~l----~~l~~L~~L~Ls~N~l 480 (539)
+.+|++|+..+||.|.|.-..|..+ ++-+.|..|.|++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 3444555555555555544444332 2334455555555544
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.62 E-value=0.21 Score=27.23 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=4.7
Q ss_pred CCCEEeccCCcCC
Q 009236 493 ALRRLNLNGNTLS 505 (539)
Q Consensus 493 ~L~~L~L~~N~l~ 505 (539)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.31 E-value=0.076 Score=53.47 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred hhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCC
Q 009236 439 GISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFN 481 (539)
Q Consensus 439 ~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~ 481 (539)
.+..+++|+.|||..|-|+-. +...+..+++|+.|+++++.++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 344455555555555554311 1223334444455555544444
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=88.30 E-value=0.26 Score=55.51 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=64.2
Q ss_pred EEEEEEccCCCCccc-CcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCc-cCchhhcCCCCCCEEe
Q 009236 421 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~ 498 (539)
.|++|.+.+-.+... +-.-..++++|..||+|+.+++-. ..+++|++|+.|.+.+=.+.- ..-..+.+|++|++||
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 488888888777532 334566799999999999999833 678899999999988777762 2224678899999999
Q ss_pred ccCCcCC
Q 009236 499 LNGNTLS 505 (539)
Q Consensus 499 L~~N~l~ 505 (539)
+|.....
T Consensus 227 IS~~~~~ 233 (699)
T KOG3665|consen 227 ISRDKNN 233 (699)
T ss_pred ccccccc
Confidence 9987654
No 68
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.68 E-value=0.53 Score=28.47 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=10.3
Q ss_pred CCCCEEeccCCcCCccCCc
Q 009236 492 TALRRLNLNGNTLSGRVPA 510 (539)
Q Consensus 492 ~~L~~L~L~~N~l~g~iP~ 510 (539)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4444
No 69
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.68 E-value=0.53 Score=28.47 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=10.3
Q ss_pred CCCCEEeccCCcCCccCCc
Q 009236 492 TALRRLNLNGNTLSGRVPA 510 (539)
Q Consensus 492 ~~L~~L~L~~N~l~g~iP~ 510 (539)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4444
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.51 E-value=0.02 Score=54.45 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=66.9
Q ss_pred chhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCCccCCcccccccc
Q 009236 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 517 (539)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~ 517 (539)
.++......+.|||+.|++- .+-..++.++.|..|||+.|++. .+|..++++..+..+++..|+++ ..|.++++++.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 45777888999999999987 45556778899999999999998 89999999999999999999998 88988888764
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.29 E-value=0.33 Score=48.11 Aligned_cols=84 Identities=25% Similarity=0.298 Sum_probs=66.0
Q ss_pred EEEEEEccCCCCccc--CcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEE
Q 009236 421 VIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRL 497 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L 497 (539)
+|..++|..|.|+.. +..-+.+|+.|+.|+|+.|.+...|-..-..+.+|++|-|.+..+...-- ..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 588999999999854 55567789999999999999986655433567899999999888876433 456678888888
Q ss_pred eccCCcC
Q 009236 498 NLNGNTL 504 (539)
Q Consensus 498 ~L~~N~l 504 (539)
.|+.|++
T Consensus 152 HmS~N~~ 158 (418)
T KOG2982|consen 152 HMSDNSL 158 (418)
T ss_pred hhccchh
Confidence 8888844
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.92 E-value=1.2 Score=46.85 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=56.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC-cCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|++++|.|.. +| . -..+|+.|.++++.--..+|..+ ..+|+.|++++| .+. .+|. +|+.|++.
T Consensus 54 l~~L~Is~c~L~s-LP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~ 120 (426)
T PRK15386 54 SGRLYIKDCDIES-LP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLEIK 120 (426)
T ss_pred CCEEEeCCCCCcc-cC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEEeC
Confidence 6789999998773 45 1 23469999998744323667655 358999999998 554 6665 36667777
Q ss_pred CCcC--CccCCccccccc
Q 009236 501 GNTL--SGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l--~g~iP~~l~~l~ 516 (539)
.|.+ -+.+|..+..|.
T Consensus 121 ~n~~~~L~~LPssLk~L~ 138 (426)
T PRK15386 121 GSATDSIKNVPNGLTSLS 138 (426)
T ss_pred CCCCcccccCcchHhhee
Confidence 6654 347888776654
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=84.81 E-value=1.5 Score=43.18 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=19.1
Q ss_pred EEEEEEccCCCCcccCcch----hccCCCCCeEEcccCccC
Q 009236 421 VIDGLGLDNQGLRGFLPNG----ISKLRHLQSINLSGNSIR 457 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~ 457 (539)
+++.++|+.|.+.-..|+. |+.-+.|.+|.|++|.+.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3555555665555444432 334455555555555553
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.80 E-value=0.8 Score=27.66 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=13.3
Q ss_pred CCCCcEEeccCCcCCccCchh
Q 009236 467 IASLEVLDLSYNFFNGSIPES 487 (539)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~ 487 (539)
|++|+.|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777777777777 55553
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.80 E-value=0.8 Score=27.66 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=13.3
Q ss_pred CCCCcEEeccCCcCCccCchh
Q 009236 467 IASLEVLDLSYNFFNGSIPES 487 (539)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~ 487 (539)
|++|+.|+|++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456777777777777 55553
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=84.59 E-value=0.47 Score=48.00 Aligned_cols=85 Identities=28% Similarity=0.378 Sum_probs=62.1
Q ss_pred eEEEEEEccCCCCcc----cCcchhccCCCCCeEEcccCccCccCccc----c-cCCCCCcEEeccCCcCCc----cCch
Q 009236 420 WVIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----L-GTIASLEVLDLSYNFFNG----SIPE 486 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~----l-~~l~~L~~L~Ls~N~l~g----~iP~ 486 (539)
.+++.|||..|-++- .+...++.+++|+.|+++.+.+...=... + ...++|++|.|.+|.++- .+-.
T Consensus 213 ~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~ 292 (382)
T KOG1909|consen 213 PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA 292 (382)
T ss_pred CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH
Confidence 568889999998873 24566778889999999998886332211 2 236789999999998873 2223
Q ss_pred hhcCCCCCCEEeccCCcC
Q 009236 487 SLGQLTALRRLNLNGNTL 504 (539)
Q Consensus 487 ~l~~l~~L~~L~L~~N~l 504 (539)
.+...+.|..|+|++|.+
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 456688899999999998
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.34 E-value=0.14 Score=50.09 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=60.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCc-ccccCCCCCcEEeccCCcCCccCchh-----hcCCCCC
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPES-----LGQLTAL 494 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~iP~~-----l~~l~~L 494 (539)
.|+.|.|+-|.|+..- .+..++.|+.|.|..|.|...-. ..+.+|++|+.|.|..|.-.|.-+.. +.-|++|
T Consensus 42 ~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL 119 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL 119 (388)
T ss_pred cceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence 4888999999998543 47889999999999999873211 35789999999999999999887753 4567888
Q ss_pred CEEe
Q 009236 495 RRLN 498 (539)
Q Consensus 495 ~~L~ 498 (539)
+.||
T Consensus 120 kKLD 123 (388)
T KOG2123|consen 120 KKLD 123 (388)
T ss_pred hhcc
Confidence 8775
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.13 E-value=2.9 Score=35.76 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=50.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.+.+.. .+...-...+.++++|+.+.+..+ +...-...+..+.+|+.+.+.. .+...-...+..+++|+.+.+..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 66777764 455444556788888999988775 5534445677887889888865 44322234566788888888876
Q ss_pred CcCCccCCcccccccccccccc
Q 009236 502 NTLSGRVPAALGGRLLHRASFK 523 (539)
Q Consensus 502 N~l~g~iP~~l~~l~~~~l~~~ 523 (539)
| +.-.-...+.+..+..+.+.
T Consensus 91 ~-~~~i~~~~f~~~~l~~i~~~ 111 (129)
T PF13306_consen 91 N-ITEIGSSSFSNCNLKEINIP 111 (129)
T ss_dssp T--BEEHTTTTTT-T--EEE-T
T ss_pred c-ccEEchhhhcCCCceEEEEC
Confidence 5 43122234455444444444
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=0.13 Score=50.96 Aligned_cols=86 Identities=23% Similarity=0.243 Sum_probs=63.0
Q ss_pred EEEEEEccCCCCcc-cCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC-cCCcc-CchhhcCCCCCCEE
Q 009236 421 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGS-IPESLGQLTALRRL 497 (539)
Q Consensus 421 ~l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~-iP~~l~~l~~L~~L 497 (539)
+|+.|||++..|+. .+..-++.+.+|+.|.|.++++...|-..+.+=.+|+.|+|+.. .|+.. +---+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47788888888773 34455777888999999999998888888888888888888864 33311 11235678888888
Q ss_pred eccCCcCCc
Q 009236 498 NLNGNTLSG 506 (539)
Q Consensus 498 ~L~~N~l~g 506 (539)
+|+.+.+.-
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 888887653
No 80
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=78.91 E-value=1.8 Score=42.56 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=61.0
Q ss_pred EEEccCCCCCCcCCCCCceeeccCcccCC------cccccC-C-CCCCCCCcceeeccCCCCCCCceEEeeecCCceeEE
Q 009236 28 MRISCGARQNIHSPPTNTLWFKDFAYTGG------IPANAT-R-PSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNV 99 (539)
Q Consensus 28 ~~IdCG~~~~~~~~~~~~~w~~D~~~~~~------~~~~~~-~-~~~~~~~y~t~R~F~~~~g~~~~Y~~~~~~~g~ylv 99 (539)
..|+||.... ++.-|+.|-.|..-.-| ....+. . .......|+|+|+=.. .+.|..|+...|.|-+
T Consensus 62 ~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd~pik~dgdyal 135 (355)
T KOG3593|consen 62 PAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYDVPIKEDGDYAL 135 (355)
T ss_pred heeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcccccccCCCceeh
Confidence 5599998764 45578999988532112 111111 1 1112247999999643 4789999999999999
Q ss_pred EEEEecccCCCCCCCCcEEEEEc-CeEEEEEec
Q 009236 100 RIFFGLVTLTSFDHEPLFDISVE-GTQIYSLKS 131 (539)
Q Consensus 100 Rl~F~~~~y~~~~~~~~F~v~~~-~~~~~~v~~ 131 (539)
=+-|....++. .+.-.|||.++ . .++..
T Consensus 136 vlkfaevyF~~-~q~kvfdvrln~s---h~vVk 164 (355)
T KOG3593|consen 136 VLKFAEVYFKT-CQHKVFDVRLNCS---HCVVK 164 (355)
T ss_pred hhhHHHHHHHh-hhhhheeeeeccc---eeEEe
Confidence 89997764432 23447999998 4 55543
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.72 E-value=0.51 Score=27.97 Aligned_cols=11 Identities=64% Similarity=0.706 Sum_probs=3.5
Q ss_pred CcEEeccCCcC
Q 009236 470 LEVLDLSYNFF 480 (539)
Q Consensus 470 L~~L~Ls~N~l 480 (539)
|+.|+|++|++
T Consensus 4 L~~L~l~~n~i 14 (24)
T PF13516_consen 4 LETLDLSNNQI 14 (24)
T ss_dssp -SEEE-TSSBE
T ss_pred CCEEEccCCcC
Confidence 33344443333
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.47 E-value=3.6 Score=25.14 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=11.8
Q ss_pred CCCEEeccCCcCCccCCc
Q 009236 493 ALRRLNLNGNTLSGRVPA 510 (539)
Q Consensus 493 ~L~~L~L~~N~l~g~iP~ 510 (539)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777777 6664
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=58.49 E-value=12 Score=31.87 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=44.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~ 500 (539)
++.|.+..+ +...-...+.+++.|+.+.+.. .+...-...+..+..|+.+++..+ +. .++ ..+.++ .|+.+.+.
T Consensus 37 l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 37 LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--T--EEE-T
T ss_pred ccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-CceEEEEC
Confidence 667777764 5544445688888899999976 444233456777999999999776 54 333 456666 88888887
Q ss_pred C
Q 009236 501 G 501 (539)
Q Consensus 501 ~ 501 (539)
.
T Consensus 112 ~ 112 (129)
T PF13306_consen 112 S 112 (129)
T ss_dssp T
T ss_pred C
Confidence 5
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.24 E-value=8.4 Score=23.54 Aligned_cols=12 Identities=58% Similarity=0.592 Sum_probs=5.9
Q ss_pred CCcEEeccCCcC
Q 009236 469 SLEVLDLSYNFF 480 (539)
Q Consensus 469 ~L~~L~Ls~N~l 480 (539)
+|+.|+|+.|++
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444455555544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.87 E-value=3.2 Score=39.05 Aligned_cols=81 Identities=25% Similarity=0.214 Sum_probs=53.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCc-cCccccc-CCCCCcEEeccCC-cCCccCchhhcCCCCCCEE
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLG-TIASLEVLDLSYN-FFNGSIPESLGQLTALRRL 497 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~-~l~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L 497 (539)
.++.++-++..|...=-..+.+|+.|+.|.+.++.--+ .--+.++ -.++|+.|+|+.| +++-.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 48888888888875545667788888888887765221 1111222 2468999999976 3543333456778888888
Q ss_pred eccC
Q 009236 498 NLNG 501 (539)
Q Consensus 498 ~L~~ 501 (539)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7764
No 86
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=51.01 E-value=1.9 Score=42.97 Aligned_cols=59 Identities=25% Similarity=0.299 Sum_probs=49.4
Q ss_pred CCCCeEEcccCccCcc-CcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCC
Q 009236 444 RHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (539)
Q Consensus 444 ~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 502 (539)
+.|++||||+..++-. +-.-+.+|..|+.|.|.++++...|-..+.+-..|+.|+|+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 3589999999888632 3334678999999999999999888889999999999999875
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.95 E-value=13 Score=22.95 Aligned_cols=13 Identities=54% Similarity=0.542 Sum_probs=7.2
Q ss_pred CCcEEeccCCcCC
Q 009236 469 SLEVLDLSYNFFN 481 (539)
Q Consensus 469 ~L~~L~Ls~N~l~ 481 (539)
+|+.|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555566555553
No 88
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=36.77 E-value=3e+02 Score=24.27 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=42.9
Q ss_pred ecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEE---EEecCCCC-------CccceEEEEE--EEecCCe---EEE
Q 009236 91 RVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY---SLKSGWSD-------HDDRAFAEAL--VFLRDGT---VSI 155 (539)
Q Consensus 91 ~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~---~v~~~f~~-------~~~~~~~E~i--~~~~~~~---l~v 155 (539)
.....+|-||+.+.- +....+.+..++.... ++...++. ..+.-+.|+. +...... +.|
T Consensus 48 ~~~~~~YrIRiRYAs------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345679999999874 2334677777764322 22222222 1123455543 2233333 566
Q ss_pred EEeecCC-CCCeEeeEEEEEcC
Q 009236 156 CFHSTGH-GDPAILSLEILQVD 176 (539)
Q Consensus 156 ~f~~~~~-~~pfIsaiEl~~l~ 176 (539)
.+.+... +.=+|-.||..|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 5555444 45568999999864
No 89
>PRK06764 hypothetical protein; Provisional
Probab=35.63 E-value=34 Score=27.15 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.0
Q ss_pred ceEEeeecCCceeEEEEE
Q 009236 85 NCYIINRVPKGHYNVRIF 102 (539)
Q Consensus 85 ~~Y~~~~~~~g~ylvRl~ 102 (539)
+.||+...++|+|.||..
T Consensus 74 nkyti~f~kpg~yvirvn 91 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeEEEecCCccEEEEEc
Confidence 689999999999999974
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.54 E-value=21 Score=38.73 Aligned_cols=63 Identities=27% Similarity=0.185 Sum_probs=35.4
Q ss_pred eEEEEEEccCCCCccc--CcchhccCCCCCeEEcccCccCccCcccccCC--CCCcEEeccCCcCCc
Q 009236 420 WVIDGLGLDNQGLRGF--LPNGISKLRHLQSINLSGNSIRGAIPSSLGTI--ASLEVLDLSYNFFNG 482 (539)
Q Consensus 420 ~~l~~L~L~~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l--~~L~~L~Ls~N~l~g 482 (539)
+.|.+++|++|+|.-. +..--..-++|..|+|++|...-.-..++.++ ..|+.|-|.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3578888888887632 22222335677888888882211112233332 236677777777654
No 91
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=29.84 E-value=3.3e+02 Score=22.77 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=43.6
Q ss_pred CcEEE-EecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECC--eeeecCcceeeecCCceeeEEEEEEeeecCeeEEEE
Q 009236 269 DLQYT-MDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILING--DIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTLTVT 345 (539)
Q Consensus 269 ~l~~~-f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing--~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l~i~ 345 (539)
.+.|. .++...+.|.+.+..+--. +.+.+.|+||+ -.....+++.. +++-..-......+....|.-.|.
T Consensus 33 ~~~~~~Vd~~~~g~y~~~~~~a~~~------~~~~~~l~id~~~g~~~~~~~~~~-tg~w~~~~~~~~~v~l~~G~h~i~ 105 (125)
T PF03422_consen 33 WIEYNNVDVPEAGTYTLTIRYANGG------GGGTIELRIDGPDGTLIGTVSLPP-TGGWDTWQTVSVSVKLPAGKHTIY 105 (125)
T ss_dssp EEEEEEEEESSSEEEEEEEEEEESS------SSEEEEEEETTTTSEEEEEEEEE--ESSTTEEEEEEEEEEEESEEEEEE
T ss_pred EEEEEEEeeCCCceEEEEEEEECCC------CCcEEEEEECCCCCcEEEEEEEcC-CCCccccEEEEEEEeeCCCeeEEE
Confidence 47888 8887889999998887632 12889999998 23344555533 333211112223344444655555
Q ss_pred EccCC
Q 009236 346 LHPKG 350 (539)
Q Consensus 346 ~~p~~ 350 (539)
|....
T Consensus 106 l~~~~ 110 (125)
T PF03422_consen 106 LVFNG 110 (125)
T ss_dssp EEESS
T ss_pred EEEEC
Confidence 55433
No 92
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=23.64 E-value=48 Score=35.16 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=25.6
Q ss_pred cCCCCCeEEcccCc-cCccCcccccC-CCCCcEEeccCCc-CCccCchh-hcCCCCCCEEeccCCc
Q 009236 442 KLRHLQSINLSGNS-IRGAIPSSLGT-IASLEVLDLSYNF-FNGSIPES-LGQLTALRRLNLNGNT 503 (539)
Q Consensus 442 ~L~~L~~L~Ls~N~-l~g~ip~~l~~-l~~L~~L~Ls~N~-l~g~iP~~-l~~l~~L~~L~L~~N~ 503 (539)
.+.+|+.|+|+... ++...-..+.. +++|+.|.+.... ++..--.. ...++.|+.|+|+.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 34555555555554 33221122222 4555555544433 22111111 1234555555555443
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.45 E-value=75 Score=41.30 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=0.0
Q ss_pred EcccCccCccCcccccCCCCCcEEeccCCcCCc--cCchhhcCCCCCCEEeccCCcCCccCCcccccccccccccccccc
Q 009236 450 NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFKSMWY 527 (539)
Q Consensus 450 ~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~~~~l~~~~~~~ 527 (539)
||++|+|+-.-+..|..|.+|+.|+|++|.+.- .+-....-+..-+.-......+.-.-|..+.+..+.++....+.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C 80 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC 80 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Q ss_pred cccc--cccCC
Q 009236 528 TWAT--CMRAP 536 (539)
Q Consensus 528 ~~~~--~~~~~ 536 (539)
.-.. |+..|
T Consensus 81 ~~~y~~C~~~~ 91 (2740)
T TIGR00864 81 DEEYVACLKDN 91 (2740)
T ss_pred CCcceeeeccc
Done!