Query 009236
Match_columns 539
No_of_seqs 511 out of 3042
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 21:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 6.1E-27 2.1E-31 216.3 7.2 154 193-364 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.9 2.4E-21 8E-26 178.8 15.9 141 26-176 6-172 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.7E-22 169.1 13.1 142 370-516 2-149 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 9E-17 3.1E-21 182.7 10.5 139 370-516 265-515 (876)
5 4eco_A Uncharacterized protein 99.6 4.4E-16 1.5E-20 172.4 10.0 143 372-524 28-284 (636)
6 3rgz_A Protein brassinosteroid 99.5 3.5E-14 1.2E-18 160.6 10.0 133 369-511 7-170 (768)
7 4fcg_A Uncharacterized protein 99.5 2.7E-14 9.2E-19 145.1 6.3 143 368-513 21-171 (328)
8 1w8a_A SLIT protein; signaling 99.4 1.9E-13 6.4E-18 127.8 9.0 113 404-516 8-126 (192)
9 3e6j_A Variable lymphocyte rec 99.4 3.8E-13 1.3E-17 129.3 11.2 112 404-516 19-135 (229)
10 3rgz_A Protein brassinosteroid 99.4 6.7E-13 2.3E-17 150.1 9.0 91 421-511 633-723 (768)
11 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.3E-17 124.2 9.6 113 404-516 11-128 (220)
12 2wfh_A SLIT homolog 2 protein 99.3 2E-12 7E-17 120.9 9.9 112 404-516 10-126 (193)
13 2v70_A SLIT-2, SLIT homolog 2 99.3 2E-12 6.8E-17 123.5 9.9 112 404-515 11-128 (220)
14 2o6s_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 119.9 10.8 112 404-515 7-123 (208)
15 2o6r_A Variable lymphocyte rec 99.3 3.6E-12 1.2E-16 117.1 9.9 113 404-516 7-124 (177)
16 1ogq_A PGIP-2, polygalacturona 99.3 1.1E-12 3.8E-17 132.2 6.5 96 421-516 77-173 (313)
17 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-11 4.8E-16 117.6 10.2 95 422-516 59-153 (220)
18 3g39_A Variable lymphocyte rec 99.3 9.1E-12 3.1E-16 113.9 8.2 106 404-509 9-119 (170)
19 4fcg_A Uncharacterized protein 99.2 3.3E-11 1.1E-15 122.2 9.4 97 421-518 207-303 (328)
20 2v9t_B SLIT homolog 2 protein 99.2 6.2E-11 2.1E-15 113.1 10.3 96 421-516 57-152 (220)
21 1w8a_A SLIT protein; signaling 99.2 3.2E-11 1.1E-15 112.5 7.7 89 421-509 55-143 (192)
22 3m19_A Variable lymphocyte rec 99.2 9.2E-11 3.1E-15 114.0 10.9 95 421-515 84-178 (251)
23 3g39_A Variable lymphocyte rec 99.2 1E-10 3.4E-15 106.9 10.5 91 423-516 12-102 (170)
24 2r9u_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 106.5 10.5 85 421-505 34-118 (174)
25 3m19_A Variable lymphocyte rec 99.1 6.6E-11 2.3E-15 115.0 8.6 94 422-515 61-154 (251)
26 2r9u_A Variable lymphocyte rec 99.1 8.4E-11 2.9E-15 107.9 8.6 90 424-516 16-105 (174)
27 2je0_A Acidic leucine-rich nuc 99.1 5.3E-11 1.8E-15 105.9 6.9 82 422-505 19-101 (149)
28 2xot_A Amphoterin-induced prot 99.1 8.9E-11 3E-15 120.6 9.2 88 422-510 66-153 (361)
29 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.2E-15 118.5 10.1 69 436-505 24-93 (347)
30 3v47_A TOLL-like receptor 5B a 99.1 4.7E-11 1.6E-15 126.0 7.1 108 403-510 7-121 (455)
31 2o6q_A Variable lymphocyte rec 99.1 1.5E-10 5.3E-15 113.6 10.1 121 392-513 5-130 (270)
32 1p9a_G Platelet glycoprotein I 99.1 1.9E-10 6.5E-15 114.5 10.7 93 422-515 102-194 (290)
33 2z81_A CD282 antigen, TOLL-lik 99.1 1E-10 3.5E-15 126.4 8.8 96 421-516 27-123 (549)
34 3e6j_A Variable lymphocyte rec 99.1 2.3E-10 7.8E-15 109.7 10.1 93 422-515 66-158 (229)
35 2xot_A Amphoterin-induced prot 99.1 1.3E-10 4.5E-15 119.3 8.5 113 404-516 18-136 (361)
36 3rfs_A Internalin B, repeat mo 99.1 3.1E-10 1.1E-14 111.7 10.9 96 421-516 110-205 (272)
37 2ell_A Acidic leucine-rich nuc 99.1 1.6E-10 5.5E-15 104.9 7.5 87 421-509 50-137 (168)
38 2o6s_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 105.9 10.3 88 422-509 78-165 (208)
39 1dce_A Protein (RAB geranylger 99.1 2.5E-10 8.4E-15 124.3 9.8 90 422-516 443-533 (567)
40 3rfs_A Internalin B, repeat mo 99.1 4.3E-10 1.5E-14 110.6 10.6 89 421-509 134-222 (272)
41 4g8a_A TOLL-like receptor 4; l 99.1 2.6E-10 8.8E-15 124.9 9.4 96 421-516 53-148 (635)
42 4ecn_A Leucine-rich repeat pro 99.0 5.7E-11 1.9E-15 135.1 4.0 80 436-515 440-540 (876)
43 4g8a_A TOLL-like receptor 4; l 99.0 2.3E-10 7.7E-15 125.4 8.6 95 421-515 470-565 (635)
44 2o6q_A Variable lymphocyte rec 99.0 7.5E-10 2.6E-14 108.7 11.0 95 421-515 110-204 (270)
45 2ifg_A High affinity nerve gro 99.0 4.7E-10 1.6E-14 114.2 9.8 102 404-506 8-117 (347)
46 3v47_A TOLL-like receptor 5B a 99.0 4.2E-10 1.4E-14 118.6 9.7 94 422-515 301-394 (455)
47 4b8c_D Glucose-repressible alc 99.0 3.1E-10 1E-14 127.3 8.2 92 421-515 248-339 (727)
48 2z62_A TOLL-like receptor 4, v 99.0 6E-10 2.1E-14 109.6 8.9 94 422-515 54-148 (276)
49 2je0_A Acidic leucine-rich nuc 99.0 2E-10 6.7E-15 102.1 4.8 94 421-516 43-140 (149)
50 2z80_A TOLL-like receptor 2, v 99.0 7.3E-10 2.5E-14 113.1 9.8 94 421-515 53-148 (353)
51 2z66_A Variable lymphocyte rec 99.0 6.9E-10 2.4E-14 110.8 8.6 94 422-515 152-246 (306)
52 2xwt_C Thyrotropin receptor; s 99.0 5.2E-10 1.8E-14 107.7 7.2 93 421-515 32-126 (239)
53 4eco_A Uncharacterized protein 99.0 2.5E-10 8.7E-15 126.1 5.5 95 421-516 207-330 (636)
54 2o6r_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 101.4 7.7 89 421-509 53-141 (177)
55 1ozn_A Reticulon 4 receptor; N 99.0 1.1E-09 3.8E-14 108.1 9.5 96 421-516 130-225 (285)
56 4b8c_D Glucose-repressible alc 99.0 1.3E-10 4.4E-15 130.3 3.1 92 421-516 225-316 (727)
57 1ozn_A Reticulon 4 receptor; N 99.0 1.1E-09 3.9E-14 108.1 9.5 92 422-513 58-150 (285)
58 2ell_A Acidic leucine-rich nuc 99.0 7E-10 2.4E-14 100.6 6.9 93 422-516 26-120 (168)
59 1dce_A Protein (RAB geranylger 99.0 1.1E-09 3.6E-14 119.3 9.4 86 421-509 464-550 (567)
60 2id5_A Lingo-1, leucine rich r 99.0 1.4E-09 4.7E-14 115.6 10.1 112 405-516 12-128 (477)
61 3t6q_A CD180 antigen; protein- 99.0 7.9E-10 2.7E-14 121.0 8.4 95 421-515 34-128 (606)
62 1wwl_A Monocyte differentiatio 98.9 3.3E-10 1.1E-14 113.8 4.7 106 421-527 122-242 (312)
63 3t6q_A CD180 antigen; protein- 98.9 1.2E-09 4.1E-14 119.6 9.3 95 422-516 427-524 (606)
64 2wfh_A SLIT homolog 2 protein 98.9 1.4E-09 4.7E-14 101.5 8.2 86 421-506 55-140 (193)
65 2z66_A Variable lymphocyte rec 98.9 1.6E-09 5.5E-14 108.1 9.3 104 422-525 128-235 (306)
66 2z62_A TOLL-like receptor 4, v 98.9 1.7E-09 5.9E-14 106.2 9.2 96 421-516 77-173 (276)
67 3vq2_A TLR4, TOLL-like recepto 98.9 1.7E-09 5.7E-14 118.5 9.8 96 421-516 81-177 (606)
68 4ezg_A Putative uncharacterize 98.9 1.2E-09 4.3E-14 101.9 7.4 84 422-506 90-173 (197)
69 3vq2_A TLR4, TOLL-like recepto 98.9 2.4E-09 8.2E-14 117.2 10.8 94 422-515 58-152 (606)
70 3zyi_A Leucine-rich repeat-con 98.9 1.8E-09 6.3E-14 114.1 9.2 110 406-515 56-170 (452)
71 1p9a_G Platelet glycoprotein I 98.9 3.4E-09 1.2E-13 105.3 10.7 84 422-506 79-162 (290)
72 4ezg_A Putative uncharacterize 98.9 2.6E-09 9E-14 99.6 8.6 93 421-516 67-159 (197)
73 1xku_A Decorin; proteoglycan, 98.9 3.3E-09 1.1E-13 107.0 9.6 91 422-513 194-284 (330)
74 1ziw_A TOLL-like receptor 3; i 98.9 2.3E-09 8E-14 119.0 9.2 94 422-515 51-144 (680)
75 2z7x_B TOLL-like receptor 1, v 98.9 1.7E-09 5.8E-14 116.2 7.6 92 422-516 23-115 (520)
76 2ft3_A Biglycan; proteoglycan, 98.9 3E-09 1E-13 107.6 8.9 109 404-515 33-146 (332)
77 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 2.4E-09 8.3E-14 116.3 8.8 93 421-516 53-146 (562)
78 3j0a_A TOLL-like receptor 5; m 98.9 2.4E-09 8.2E-14 122.2 9.0 86 422-507 50-138 (844)
79 2z7x_B TOLL-like receptor 1, v 98.9 2.3E-09 7.9E-14 115.1 8.1 91 422-515 350-443 (520)
80 2ft3_A Biglycan; proteoglycan, 98.9 2.4E-09 8.1E-14 108.3 7.4 93 421-514 194-286 (332)
81 3zyi_A Leucine-rich repeat-con 98.9 3.4E-09 1.2E-13 112.0 8.9 93 422-516 198-290 (452)
82 3oja_B Anopheles plasmodium-re 98.9 4E-09 1.4E-13 115.6 9.7 105 421-525 100-204 (597)
83 2id5_A Lingo-1, leucine rich r 98.8 3.8E-09 1.3E-13 112.2 8.7 94 422-515 82-175 (477)
84 3oja_B Anopheles plasmodium-re 98.8 6.5E-09 2.2E-13 113.9 10.6 83 421-506 124-206 (597)
85 2z63_A TOLL-like receptor 4, v 98.8 3.8E-09 1.3E-13 114.5 8.6 96 421-516 422-518 (570)
86 1xku_A Decorin; proteoglycan, 98.8 3.7E-09 1.3E-13 106.7 8.0 101 404-507 31-136 (330)
87 3zyj_A Leucine-rich repeat-con 98.8 3.7E-09 1.2E-13 111.3 8.2 92 422-515 187-278 (440)
88 3zyj_A Leucine-rich repeat-con 98.8 5.7E-09 2E-13 109.8 9.6 110 406-515 45-159 (440)
89 1a9n_A U2A', U2A'; complex (nu 98.8 4.9E-09 1.7E-13 95.9 7.9 87 421-511 43-131 (176)
90 3o6n_A APL1; leucine-rich repe 98.8 6.1E-09 2.1E-13 107.7 9.6 105 421-525 94-198 (390)
91 1a9n_A U2A', U2A'; complex (nu 98.8 2.5E-09 8.4E-14 98.0 5.5 99 422-525 21-123 (176)
92 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 5E-09 1.7E-13 113.8 7.9 91 422-515 379-472 (562)
93 1ziw_A TOLL-like receptor 3; i 98.8 8.2E-09 2.8E-13 114.6 9.5 93 421-513 74-166 (680)
94 3oja_A Leucine-rich immune mol 98.8 7.4E-09 2.5E-13 110.6 8.8 92 421-516 145-237 (487)
95 4glp_A Monocyte differentiatio 98.8 7E-09 2.4E-13 103.9 8.0 107 421-528 118-239 (310)
96 3cvr_A Invasion plasmid antige 98.8 3.8E-09 1.3E-13 114.8 6.5 89 422-523 82-170 (571)
97 3o6n_A APL1; leucine-rich repe 98.8 1.2E-08 4.1E-13 105.4 9.9 83 421-506 118-200 (390)
98 2z63_A TOLL-like receptor 4, v 98.8 9.5E-09 3.3E-13 111.3 9.5 96 421-516 77-173 (570)
99 2z81_A CD282 antigen, TOLL-lik 98.8 7.7E-09 2.6E-13 111.7 7.9 94 422-515 76-171 (549)
100 4glp_A Monocyte differentiatio 98.8 3.2E-09 1.1E-13 106.4 4.3 104 421-526 170-285 (310)
101 3j0a_A TOLL-like receptor 5; m 98.8 1.5E-08 5.1E-13 115.6 10.3 94 422-515 75-171 (844)
102 1wwl_A Monocyte differentiatio 98.8 2.8E-09 9.6E-14 106.9 3.4 106 421-526 150-266 (312)
103 2xwt_C Thyrotropin receptor; s 98.7 9.5E-09 3.2E-13 98.7 6.6 89 421-512 81-175 (239)
104 2z80_A TOLL-like receptor 2, v 98.7 2.4E-08 8.1E-13 101.8 8.5 94 422-516 102-198 (353)
105 3oja_A Leucine-rich immune mol 98.7 1.3E-08 4.5E-13 108.7 6.0 99 422-525 36-156 (487)
106 3o53_A Protein LRIM1, AGAP0063 98.7 3.9E-08 1.3E-12 98.7 8.4 90 422-515 146-236 (317)
107 3o53_A Protein LRIM1, AGAP0063 98.6 1.9E-08 6.4E-13 101.1 4.9 85 422-516 60-144 (317)
108 4fmz_A Internalin; leucine ric 98.6 7E-08 2.4E-12 97.8 8.2 85 421-509 244-328 (347)
109 3bz5_A Internalin-J, INLJ; leu 98.6 1.5E-07 5.2E-12 99.6 10.4 86 422-516 172-257 (457)
110 1h6t_A Internalin B; cell adhe 98.6 1.7E-07 5.8E-12 93.0 10.0 87 421-515 113-199 (291)
111 1ds9_A Outer arm dynein; leuci 98.6 1E-09 3.5E-14 102.6 -6.1 91 421-516 49-140 (198)
112 1h6t_A Internalin B; cell adhe 98.6 2E-07 7E-12 92.4 10.3 81 422-508 92-172 (291)
113 1m9s_A Internalin B; cell inva 98.5 1.5E-07 5E-12 103.2 9.5 79 422-506 133-211 (605)
114 1m9s_A Internalin B; cell inva 98.5 1.8E-07 6.2E-12 102.4 10.1 88 421-516 110-197 (605)
115 1h6u_A Internalin H; cell adhe 98.5 1.8E-07 6.3E-12 93.5 9.3 87 421-515 130-216 (308)
116 1xeu_A Internalin C; cellular 98.5 2.9E-07 9.8E-12 90.0 10.2 80 422-506 65-164 (263)
117 1h6u_A Internalin H; cell adhe 98.5 2.8E-07 9.7E-12 92.1 10.3 80 421-506 86-165 (308)
118 3cvr_A Invasion plasmid antige 98.5 1.6E-07 5.5E-12 102.0 9.0 76 422-510 102-177 (571)
119 4ay9_X Follicle-stimulating ho 98.5 5.9E-08 2E-12 98.9 5.2 109 404-512 9-124 (350)
120 1jl5_A Outer protein YOPM; leu 98.5 1.8E-07 6.3E-12 98.9 9.1 76 422-505 133-208 (454)
121 1jl5_A Outer protein YOPM; leu 98.4 1.1E-07 3.7E-12 100.7 5.4 90 421-518 318-424 (454)
122 3bz5_A Internalin-J, INLJ; leu 98.4 1.6E-07 5.5E-12 99.4 6.3 83 422-506 235-332 (457)
123 2ast_B S-phase kinase-associat 98.4 2.1E-08 7.3E-13 101.0 -0.6 81 422-502 95-178 (336)
124 1o6v_A Internalin A; bacterial 98.4 3.1E-07 1.1E-11 97.2 8.3 79 422-506 311-389 (466)
125 1ds9_A Outer arm dynein; leuci 98.4 3.2E-09 1.1E-13 99.1 -6.3 87 421-510 71-158 (198)
126 2ca6_A RAN GTPase-activating p 98.4 4.3E-08 1.5E-12 101.1 1.4 85 422-506 189-288 (386)
127 3goz_A Leucine-rich repeat-con 98.4 7.2E-08 2.4E-12 98.7 3.0 86 422-507 53-153 (362)
128 4fmz_A Internalin; leucine ric 98.4 4.8E-07 1.6E-11 91.5 8.4 99 421-525 222-323 (347)
129 1o6v_A Internalin A; bacterial 98.4 5.6E-07 1.9E-11 95.2 9.2 88 421-516 266-353 (466)
130 2ast_B S-phase kinase-associat 98.4 7.4E-08 2.5E-12 97.0 1.5 102 421-523 71-178 (336)
131 2ca6_A RAN GTPase-activating p 98.4 8E-08 2.7E-12 99.1 1.6 106 421-526 160-287 (386)
132 1xeu_A Internalin C; cellular 98.4 1.1E-06 3.7E-11 85.8 9.5 77 422-505 43-119 (263)
133 3g06_A SSPH2 (leucine-rich rep 98.3 3E-07 1E-11 100.9 5.7 86 422-516 223-308 (622)
134 3goz_A Leucine-rich repeat-con 98.3 2.5E-07 8.5E-12 94.7 3.7 91 422-512 24-129 (362)
135 3g06_A SSPH2 (leucine-rich rep 98.2 2.9E-06 9.8E-11 93.1 9.5 92 421-525 62-153 (622)
136 3rw6_A Nuclear RNA export fact 98.1 5.9E-07 2E-11 87.7 2.3 67 441-509 167-237 (267)
137 3rw6_A Nuclear RNA export fact 98.1 2.4E-06 8.2E-11 83.4 4.9 77 421-499 171-258 (267)
138 4ay9_X Follicle-stimulating ho 98.0 4.7E-06 1.6E-10 84.7 6.4 90 424-516 13-104 (350)
139 1z7x_W Ribonuclease inhibitor; 98.0 1.2E-06 4.1E-11 92.1 1.1 87 421-507 314-413 (461)
140 1z7x_W Ribonuclease inhibitor; 98.0 3.7E-07 1.3E-11 96.0 -3.3 93 422-514 286-396 (461)
141 3un9_A NLR family member X1; l 97.7 1E-05 3.4E-10 83.2 1.7 62 444-505 155-224 (372)
142 3un9_A NLR family member X1; l 97.6 1.2E-05 4E-10 82.6 1.5 91 422-512 157-259 (372)
143 3sb4_A Hypothetical leucine ri 97.5 0.00012 4.2E-09 73.4 6.8 94 422-517 228-322 (329)
144 3ogk_B Coronatine-insensitive 97.4 2.8E-05 9.6E-10 84.3 1.0 86 422-507 438-528 (592)
145 1io0_A Tropomodulin; LRR prote 97.3 8E-05 2.7E-09 68.4 2.2 83 422-504 67-163 (185)
146 1io0_A Tropomodulin; LRR prote 97.3 6.7E-05 2.3E-09 68.9 1.3 86 422-507 38-138 (185)
147 3e4g_A ATP synthase subunit S, 97.1 0.00023 7.8E-09 64.6 3.0 83 421-503 62-150 (176)
148 3ogk_B Coronatine-insensitive 97.0 0.00016 5.4E-09 78.3 1.7 101 422-524 194-304 (592)
149 2p1m_B Transport inhibitor res 96.8 0.00018 6E-09 77.9 0.1 85 421-506 433-520 (594)
150 2p1m_B Transport inhibitor res 96.7 0.00027 9.2E-09 76.5 0.3 81 422-502 132-221 (594)
151 3rfe_A Platelet glycoprotein I 96.0 0.01 3.5E-07 50.9 6.3 56 424-481 12-68 (130)
152 3sb4_A Hypothetical leucine ri 95.8 0.0087 3E-07 59.7 5.8 76 422-499 252-328 (329)
153 2ra8_A Uncharacterized protein 95.7 0.0028 9.6E-08 64.5 1.6 39 467-505 251-292 (362)
154 2ra8_A Uncharacterized protein 95.5 0.0025 8.5E-08 64.9 0.4 65 442-506 250-321 (362)
155 3rfe_A Platelet glycoprotein I 95.3 0.025 8.4E-07 48.4 6.0 57 447-505 11-68 (130)
156 4fdw_A Leucine rich hypothetic 95.0 0.038 1.3E-06 56.9 7.2 81 422-505 273-358 (401)
157 4fdw_A Leucine rich hypothetic 94.2 0.065 2.2E-06 55.1 6.9 101 422-525 250-355 (401)
158 3e4g_A ATP synthase subunit S, 93.5 0.041 1.4E-06 49.7 3.2 62 444-505 61-128 (176)
159 1pgv_A TMD-1, tropomodulin TMD 93.2 0.038 1.3E-06 50.8 2.6 56 422-477 72-135 (197)
160 1pgv_A TMD-1, tropomodulin TMD 89.8 0.14 4.8E-06 47.0 2.5 81 422-502 43-136 (197)
161 4fs7_A Uncharacterized protein 85.6 0.82 2.8E-05 46.3 5.5 62 438-501 314-375 (394)
162 4gt6_A Cell surface protein; l 85.1 1.6 5.5E-05 44.1 7.4 79 422-504 290-369 (394)
163 2w3j_A Carbohydrate binding mo 84.7 18 0.00061 30.9 13.1 89 82-176 38-130 (145)
164 4h09_A Hypothetical leucine ri 84.4 1.4 4.8E-05 44.1 6.6 78 422-502 265-343 (379)
165 2vzp_A Aocbm35, EXO-beta-D-glu 81.2 6.6 0.00022 32.7 8.5 40 269-313 40-79 (127)
166 4h09_A Hypothetical leucine ri 79.8 3.7 0.00013 41.0 7.6 90 422-515 242-332 (379)
167 2w47_A Lipolytic enzyme, G-D-S 79.5 7.6 0.00026 33.2 8.5 85 269-362 41-129 (144)
168 2w3j_A Carbohydrate binding mo 79.2 6.3 0.00021 33.9 7.8 85 269-363 40-128 (145)
169 4gt6_A Cell surface protein; l 78.9 1.9 6.4E-05 43.6 5.1 79 422-505 313-391 (394)
170 2wz8_A Cellulosome protein doc 76.2 31 0.0011 29.8 11.6 90 85-176 49-150 (156)
171 4fs7_A Uncharacterized protein 74.8 6.9 0.00024 39.3 8.0 83 438-524 291-375 (394)
172 2w47_A Lipolytic enzyme, G-D-S 71.7 45 0.0015 28.1 14.2 90 82-177 39-133 (144)
173 2w87_A Esterase D, XYL-CBM35; 68.2 53 0.0018 27.6 11.5 87 82-174 38-130 (139)
174 2w87_A Esterase D, XYL-CBM35; 66.9 15 0.00053 31.1 7.2 39 269-312 40-78 (139)
175 2vzp_A Aocbm35, EXO-beta-D-glu 66.7 52 0.0018 26.9 12.9 86 81-172 37-127 (127)
176 2wz8_A Cellulosome protein doc 63.1 22 0.00077 30.8 7.7 43 269-311 48-96 (156)
177 2o14_A Hypothetical protein YX 62.5 52 0.0018 32.8 11.4 77 88-177 79-157 (375)
178 2bgo_A Endo-B1,4-mannanase 5C; 46.0 1.4E+02 0.0047 25.3 11.0 90 82-179 35-126 (140)
179 4d8m_A Pesticidal crystal prot 21.9 3.4E+02 0.012 28.6 9.5 84 86-174 489-584 (587)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.93 E-value=6.1e-27 Score=216.28 Aligned_cols=154 Identities=19% Similarity=0.214 Sum_probs=113.8
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCceeeccccceeccCCCCCCChHHHHHHhhccCCCCCCcEE
Q 009236 193 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY 272 (539)
Q Consensus 193 ~~~~Rin~Gg~~~~~~~~~~~d~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~~l~~ 272 (539)
+++|||||||+.. .| .. +|.|.+|..+...+... .....+.. ...+.+|..||||||.+.. +++|
T Consensus 5 ~~~~~INcGg~~~---~d----~~--gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY 69 (174)
T 2jwp_A 5 KVIWAVNAGGESH---VD----VH--GIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY 69 (174)
T ss_dssp HEEEEEEETSSSE---EE----TT--TEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred cEEEEEECCCCCc---cC----CC--CCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence 5689999999753 22 22 68888876432111100 00111111 1123468899999999764 4999
Q ss_pred EEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeecCcceeeecCCceeeEEEEEEee-------------ecC
Q 009236 273 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG 339 (539)
Q Consensus 273 ~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~-------------~~~ 339 (539)
.|+++++|+|+|||||||+.. .+.++|+|||+|||++++++||+..++|+ .+++++++.+. +.+
T Consensus 70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~ 146 (174)
T 2jwp_A 70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT 146 (174)
T ss_dssp EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence 999998999999999999965 45899999999999999999999988876 46777776655 356
Q ss_pred eeEEEEEccCCCchhhhhhhhhhhh
Q 009236 340 RTLTVTLHPKGGSHAIINAIEVFEI 364 (539)
Q Consensus 340 ~~l~i~~~p~~~~~~~lnalei~~~ 364 (539)
++|+|+|.|.....|+||||||++.
T Consensus 147 g~L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 147 GKLSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred CeEEEEEeccCCCCcEEEEEEEEeC
Confidence 7899999987666799999999864
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.87 E-value=2.4e-21 Score=178.77 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=107.4
Q ss_pred CcEEEccCCCCCCcCCCCCceeeccCccc-CCcccccCC------C-CCCCCCcceeeccCCCCCCCceEEeeecCCcee
Q 009236 26 FAMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANATR------P-SFITPPLKTLRYFPLSEGPENCYIINRVPKGHY 97 (539)
Q Consensus 26 ~~~~IdCG~~~~~~~~~~~~~w~~D~~~~-~~~~~~~~~------~-~~~~~~y~t~R~F~~~~g~~~~Y~~~~~~~g~y 97 (539)
..++||||++.. +|..||+|.+|..+. .|....... . .....+|+|+|+|+. ..+|.||+.++|+|
T Consensus 6 ~~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y 79 (174)
T 2jwp_A 6 VIWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEY 79 (174)
T ss_dssp EEEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEE
T ss_pred EEEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEE
Confidence 358999998753 345799999998764 232111110 0 012348999999984 58999999989999
Q ss_pred EEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCCC-----ccceEEEEEEEe-------------cCCeEEEEEee
Q 009236 98 NVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDH-----DDRAFAEALVFL-------------RDGTVSICFHS 159 (539)
Q Consensus 98 lvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~~-----~~~~~~E~i~~~-------------~~~~l~v~f~~ 159 (539)
+|||||.+..+.. ...+.|||+++| .+++++|+.. ..++.||+.+.+ .++.|.|+|.|
T Consensus 80 ~VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p 155 (174)
T 2jwp_A 80 VLVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVK 155 (174)
T ss_dssp EEEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEEC
T ss_pred EEEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEec
Confidence 9999999997754 567899999999 8899888752 347888888763 56789999998
Q ss_pred cCCCCCeEeeEEEEEcC
Q 009236 160 TGHGDPAILSLEILQVD 176 (539)
Q Consensus 160 ~~~~~pfIsaiEl~~l~ 176 (539)
.....||||||||++.+
T Consensus 156 ~~~~~a~inaIEI~~~~ 172 (174)
T 2jwp_A 156 GYYDNPKVCALFIMKGT 172 (174)
T ss_dssp SSSCSSSEEEEEEESSC
T ss_pred cCCCCcEEEEEEEEeCc
Confidence 65678999999999753
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.1e-17 Score=169.06 Aligned_cols=142 Identities=27% Similarity=0.514 Sum_probs=117.2
Q ss_pred CCchHHHHHHHHHHhhcCCCCC-CCCCC--CCCCCCCCCCcccccccCCCCceeEEEEEEccCCCCcc--cCcchhccCC
Q 009236 370 KTLPEEVRALQVLKNSLDLPHR-FGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR 444 (539)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~~~~~-~~W~~--~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~L~ 444 (539)
.|.++|+.||++||+.+.++.. .+|.. ++|. +.|.||.|+.... ..+|+.|+|++|++.| .+|..+.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCCC
Confidence 4778999999999999976542 47863 4442 3599999974321 1369999999999999 8999999999
Q ss_pred CCCeEEccc-CccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 445 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 445 ~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
+|+.|+|++ |.+.+.+|..++++++|+.|+|++|++++.+|..+.++++|++|+|++|.+++.+|..+++++
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 999999995 999989999899999999999999999888888888888888888888888888888777654
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=9e-17 Score=182.68 Aligned_cols=139 Identities=19% Similarity=0.314 Sum_probs=119.1
Q ss_pred CCchHHHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCC------------cccccccCCCCceeEEEEEEccCCCCc
Q 009236 370 KTLPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLR 433 (539)
Q Consensus 370 ~~~~~~~~aL~~~k~~~~~~~~~~W~~~~----C~~~~~~w------------~gv~C~~~~~~~~~~l~~L~L~~n~l~ 433 (539)
.+..+|+.||++||+++..+ +|+... +.|..|.| .||.|+.. .+|+.|+|++++|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK 336 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred ccchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence 34567999999999999765 685332 22334689 99999752 36999999999999
Q ss_pred ccCcchhccCCCCCeEEc-ccCccCcc-----------------------------------------------------
Q 009236 434 GFLPNGISKLRHLQSINL-SGNSIRGA----------------------------------------------------- 459 (539)
Q Consensus 434 g~~p~~l~~L~~L~~L~L-s~N~l~g~----------------------------------------------------- 459 (539)
|.+|+.|++|++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 88766555
Q ss_pred -----------------------CcccccCCCCCcEEeccCCcCCc-----------------cCchhhc--CCCCCCEE
Q 009236 460 -----------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRL 497 (539)
Q Consensus 460 -----------------------ip~~l~~l~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L~~L 497 (539)
+|..+++|++|+.|+|++|+|+| .+|..++ +|++|+.|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 88899999999999999999998 4999988 99999999
Q ss_pred eccCCcCCccCCccccccc
Q 009236 498 NLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 498 ~L~~N~l~g~iP~~l~~l~ 516 (539)
+|++|++.|.+|..++++.
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~ 515 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLP 515 (876)
T ss_dssp EEESCTTCCSCCGGGGGCS
T ss_pred ECcCCCCCccChHHHhCCC
Confidence 9999999999999888775
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=4.4e-16 Score=172.42 Aligned_cols=143 Identities=18% Similarity=0.280 Sum_probs=118.7
Q ss_pred chHHHHHHHHHHhhcCCCCC----------CCCCCC-CCCCCCCCC---cccccccCCCCceeEEEEEEccCCCCcccCc
Q 009236 372 LPEEVRALQVLKNSLDLPHR----------FGWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLP 437 (539)
Q Consensus 372 ~~~~~~aL~~~k~~~~~~~~----------~~W~~~-~C~~~~~~w---~gv~C~~~~~~~~~~l~~L~L~~n~l~g~~p 437 (539)
...|+.||.++++++..+.. .+|+.+ +| |.| .||.|+.. ++|+.|+|+++++.|.+|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCC
Confidence 45699999999998764421 257632 23 479 99999753 369999999999999999
Q ss_pred chhccCCCCCeEEcccCc--------------------------------------------------------------
Q 009236 438 NGISKLRHLQSINLSGNS-------------------------------------------------------------- 455 (539)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~-------------------------------------------------------------- 455 (539)
+.+++|++|+.|+|++|.
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 999999999999999884
Q ss_pred ----------------cCccCcccccCCCCCcEEeccCCcCCcc-----------------Cchhhc--CCCCCCEEecc
Q 009236 456 ----------------IRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLN 500 (539)
Q Consensus 456 ----------------l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~L~ 500 (539)
++| +|..++++++|+.|+|++|.++|. +|..++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 445 899999999999999999999986 999999 99999999999
Q ss_pred CCcCCccCCcccccccc---ccccccc
Q 009236 501 GNTLSGRVPAALGGRLL---HRASFKS 524 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~---~~l~~~~ 524 (539)
+|++.|.+|..++++.. ++++.|+
T Consensus 258 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 258 NCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred CCcCCccChHHHhcCCCCCEEECcCCC
Confidence 99999999998887643 3444444
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=3.5e-14 Score=160.57 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=89.7
Q ss_pred cCCchHHHHHHHHHHhhcCCCC-CCCCC-CCCCCCCCCCCcccccccCCCCceeEEEEEEccCCCCccc---Ccc-----
Q 009236 369 SKTLPEEVRALQVLKNSLDLPH-RFGWN-GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LPN----- 438 (539)
Q Consensus 369 ~~~~~~~~~aL~~~k~~~~~~~-~~~W~-~~~C~~~~~~w~gv~C~~~~~~~~~~l~~L~L~~n~l~g~---~p~----- 438 (539)
..+.++|++||++||+.+.++. ..+|+ +..| |.|.||.|+ . .+|+.|+|+++++.|. +|+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhcc
Confidence 4456789999999999997664 34896 4445 379999997 2 3699999999999987 665
Q ss_pred ------------------hhccCCCCCeEEcccCccCccCcc--cccCCCCCcEEeccCCcCCccCchhh-cCCCCCCEE
Q 009236 439 ------------------GISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRL 497 (539)
Q Consensus 439 ------------------~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L 497 (539)
.+++|++|++|+|++|.++|.+|. .+++|++|++|+|++|.+.+.+|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 455555666666666666665555 56666666666666666665555544 556666666
Q ss_pred eccCCcCCccCCcc
Q 009236 498 NLNGNTLSGRVPAA 511 (539)
Q Consensus 498 ~L~~N~l~g~iP~~ 511 (539)
+|++|++++.+|..
T Consensus 157 ~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 157 DLSANSISGANVVG 170 (768)
T ss_dssp ECCSSCCEEETHHH
T ss_pred ECCCCccCCcCChh
Confidence 66666666555543
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.47 E-value=2.7e-14 Score=145.07 Aligned_cols=143 Identities=22% Similarity=0.325 Sum_probs=102.1
Q ss_pred ccCCchHHHHHHHHHHhhcC-CCCC--CCCC-CCCCCCCCCCCcccccccCCC----CceeEEEEEEccCCCCcccCcch
Q 009236 368 ESKTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNG 439 (539)
Q Consensus 368 ~~~~~~~~~~aL~~~k~~~~-~~~~--~~W~-~~~C~~~~~~w~gv~C~~~~~----~~~~~l~~L~L~~n~l~g~~p~~ 439 (539)
......+|..||++||..+. ++.. ..|. ...|.+..|.|.|+.|..... ....+|+.|+|++|++. .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 34556789999999999773 3322 2462 122333446899999952100 00124778888888887 67777
Q ss_pred hccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCCccCCcccc
Q 009236 440 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513 (539)
Q Consensus 440 l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~ 513 (539)
+.+|++|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|++.+.+|..++
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 888888888888888888 78888888888888888888888 7788888888888888888777777777653
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=1.9e-13 Score=127.77 Aligned_cols=113 Identities=20% Similarity=0.242 Sum_probs=97.6
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcc-hhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 477 (539)
|.|..+.|+...... ...++.|+|++|.+.+..+. .+.++++|+.|+|++|.+++..|..+..+++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 578888887543211 12578999999999987765 489999999999999999999999999999999999999
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
|++++..|..+.++++|+.|+|++|++++.+|..+..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 999988888899999999999999999999898887664
No 9
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=3.8e-13 Score=129.33 Aligned_cols=112 Identities=20% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|.+|.|+...... ...++.|+|++|.|++..|..+.++++|+.|+|++|.+....+..+..+++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 369999998543221 135789999999999988999999999999999999998655566899999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
++++..+..+..+++|+.|+|++|+++ .+|..+.++.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 135 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC
Confidence 999766667889999999999999999 8888776554
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.36 E-value=6.7e-13 Score=150.08 Aligned_cols=91 Identities=35% Similarity=0.626 Sum_probs=88.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.++|.+|..+++|++|+.|+|++|.++|.+|..+++|++|+.|||++|+++|.+|..++++++|+.|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCccCCcc
Q 009236 501 GNTLSGRVPAA 511 (539)
Q Consensus 501 ~N~l~g~iP~~ 511 (539)
+|+++|.||..
T Consensus 713 ~N~l~g~iP~~ 723 (768)
T 3rgz_A 713 NNNLSGPIPEM 723 (768)
T ss_dssp SSEEEEECCSS
T ss_pred CCcccccCCCc
Confidence 99999999975
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=1.6e-12 Score=124.24 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=88.1
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|..+.|+...... ...++.|+|++|+|++..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 568888887543211 124788999999988877778888899999999999998888888888889999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
+++...+..+.++++|+.|+|++|++++..|..+.++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 128 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH 128 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC
Confidence 88844444567888888888888888877777776553
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=120.85 Aligned_cols=112 Identities=27% Similarity=0.318 Sum_probs=94.1
Q ss_pred CCCcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|..+.|+..... ....++.|+|++|.|+ .+|..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45777888754321 1135889999999998 78899999999999999999999888888999999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
++++..|..+.++++|+.|+|++|++++..+..+.++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 99988888999999999999999999954444565553
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=123.47 Aligned_cols=112 Identities=19% Similarity=0.205 Sum_probs=73.5
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCc-chhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLP-NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 477 (539)
|.|..+.|+...... ...++.|+|++|.|++..+ ..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777776433211 1124567777777776644 3466777777777777777766666677777777777777
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCcCCccCCcccccc
Q 009236 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
|++++..|..+.++++|+.|+|++|++++..|..+.++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 77776666667777777777777777776666665544
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=4e-12 Score=119.85 Aligned_cols=112 Identities=21% Similarity=0.259 Sum_probs=87.6
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|.++.|+...... ...++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 579999997543211 124788999999998766667889999999999999998666666788999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCcccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
++++..+..+.++++|+.|+|++|++++..+..+.++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 123 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKL 123 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccC
Confidence 9986666667888999999999999886555545544
No 15
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=3.6e-12 Score=117.05 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=93.0
Q ss_pred CCCcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|.++.|+..... ....++.|+|++|++.+..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57999999754321 1135889999999999877777899999999999999999776677899999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
++++..+..+..+++|+.|+|++|++++..+..+.++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCc
Confidence 99977777789999999999999999954444445443
No 16
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=1.1e-12 Score=132.16 Aligned_cols=96 Identities=32% Similarity=0.585 Sum_probs=85.7
Q ss_pred EEEEEEccC-CCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++ |.+.+.+|..+++|++|++|+|++|.+++.+|..+.++++|+.|+|++|.+++.+|..+.++++|++|+|
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 156 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC
Confidence 478899995 8999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|+++|.+|..++++.
T Consensus 157 ~~N~l~~~~p~~l~~l~ 173 (313)
T 1ogq_A 157 DGNRISGAIPDSYGSFS 173 (313)
T ss_dssp CSSCCEEECCGGGGCCC
T ss_pred cCCcccCcCCHHHhhhh
Confidence 99999988998887664
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.26 E-value=1.4e-11 Score=117.56 Aligned_cols=95 Identities=18% Similarity=0.215 Sum_probs=79.3
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.|++..+..|.++++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus 59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 138 (220)
T 2v70_A 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT
T ss_pred CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC
Confidence 77888888888887777888888888888888888877777788888888888888888887788888888888888888
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|++++..|..+..+.
T Consensus 139 N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 139 NQITTVAPGAFDTLH 153 (220)
T ss_dssp SCCCCBCTTTTTTCT
T ss_pred CcCCEECHHHhcCCC
Confidence 888877777776654
No 18
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.25 E-value=9.1e-12 Score=113.93 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|+.+.|+...... ...++.|+|++|.|++..|..|.+|++|+.|+|++|.+++..+..+..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 568888887543211 134788999999999988999999999999999999999777777899999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCC
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP 509 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP 509 (539)
+|++..|..+.++++|+.|+|++|.++...+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997666679999999999999999986543
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=3.3e-11 Score=122.19 Aligned_cols=97 Identities=25% Similarity=0.317 Sum_probs=88.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++ +|+.+.++++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.|+|+
T Consensus 207 ~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp TCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred CCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 37889999999995 67789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCccCCccccccccc
Q 009236 501 GNTLSGRVPAALGGRLLH 518 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~~ 518 (539)
+|++.|.+|..+++++.+
T Consensus 286 ~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp TCTTCCCCCGGGGGSCTT
T ss_pred CCCchhhccHHHhhccCc
Confidence 999999999999888643
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=6.2e-11 Score=113.05 Aligned_cols=96 Identities=25% Similarity=0.284 Sum_probs=85.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.|++..|..|.+|++|+.|+|++|.++...+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 37899999999999889999999999999999999996555567899999999999999998888999999999999999
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|++++..+..+..+.
T Consensus 137 ~N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 137 DNKLQTIAKGTFSPLR 152 (220)
T ss_dssp SSCCSCCCTTTTTTCT
T ss_pred CCcCCEECHHHHhCCC
Confidence 9999976666666554
No 21
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.17 E-value=3.2e-11 Score=112.46 Aligned_cols=89 Identities=26% Similarity=0.361 Sum_probs=84.9
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.|++..|..+.++++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 38899999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred CCcCCccCC
Q 009236 501 GNTLSGRVP 509 (539)
Q Consensus 501 ~N~l~g~iP 509 (539)
+|.+++..+
T Consensus 135 ~N~l~c~c~ 143 (192)
T 1w8a_A 135 SNPFNCNCH 143 (192)
T ss_dssp TCCBCCSGG
T ss_pred CCCccCcCc
Confidence 999998765
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.17 E-value=9.2e-11 Score=113.98 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=72.2
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 37778888888887666777888888888888888886666667788888888888888886555577888888888888
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|++++..|..+.++
T Consensus 164 ~N~l~~~~~~~~~~l 178 (251)
T 3m19_A 164 TNQLQSVPHGAFDRL 178 (251)
T ss_dssp SSCCSCCCTTTTTTC
T ss_pred CCcCCccCHHHHhCC
Confidence 888886555555544
No 23
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=1e-10 Score=106.94 Aligned_cols=91 Identities=25% Similarity=0.306 Sum_probs=79.3
Q ss_pred EEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCC
Q 009236 423 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 502 (539)
Q Consensus 423 ~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N 502 (539)
+.|++++|+|+. +|..+ .++|+.|+|++|.+++..|..+..+++|+.|+|++|+|++..|..+.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 479999999985 77666 389999999999999988999999999999999999999766667899999999999999
Q ss_pred cCCccCCccccccc
Q 009236 503 TLSGRVPAALGGRL 516 (539)
Q Consensus 503 ~l~g~iP~~l~~l~ 516 (539)
+|++..|..+.++.
T Consensus 89 ~l~~~~~~~~~~l~ 102 (170)
T 3g39_A 89 QLKSIPRGAFDNLK 102 (170)
T ss_dssp CCCCCCTTTTTTCT
T ss_pred ccCEeCHHHhcCCC
Confidence 99966555566654
No 24
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.15 E-value=1.4e-10 Score=106.45 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=58.4
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.|.+..|..|.+|++|+.|+|++|.|++..+..+..+++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 35667777777777666677777777777777777775444445677777777777777774444446777777777777
Q ss_pred CCcCC
Q 009236 501 GNTLS 505 (539)
Q Consensus 501 ~N~l~ 505 (539)
+|.+.
T Consensus 114 ~N~~~ 118 (174)
T 2r9u_A 114 NNPWD 118 (174)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 77776
No 25
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.14 E-value=6.6e-11 Score=115.00 Aligned_cols=94 Identities=22% Similarity=0.269 Sum_probs=57.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 55566666666655555566666666666666666655555566666666666666666644444556677777777777
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|++++..|..++++
T Consensus 141 N~l~~~~~~~~~~l 154 (251)
T 3m19_A 141 NQLQSIPAGAFDKL 154 (251)
T ss_dssp SCCCCCCTTTTTTC
T ss_pred CcCCccCHHHcCcC
Confidence 77775444445443
No 26
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=8.4e-11 Score=107.93 Aligned_cols=90 Identities=24% Similarity=0.285 Sum_probs=77.2
Q ss_pred EEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCc
Q 009236 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 503 (539)
Q Consensus 424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~ 503 (539)
.+++++|+|. .+|..+. ++|+.|+|++|.+++..|..+..+++|+.|+|++|+|++..+..+.++++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 6899999985 6787664 899999999999999889999999999999999999997555567899999999999999
Q ss_pred CCccCCccccccc
Q 009236 504 LSGRVPAALGGRL 516 (539)
Q Consensus 504 l~g~iP~~l~~l~ 516 (539)
|++..+..+.++.
T Consensus 93 l~~l~~~~~~~l~ 105 (174)
T 2r9u_A 93 LKSIPRGAFDNLK 105 (174)
T ss_dssp CCCCCTTTTTTCT
T ss_pred cceeCHHHhcccc
Confidence 9955444466554
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=5.3e-11 Score=105.86 Aligned_cols=82 Identities=24% Similarity=0.328 Sum_probs=41.3
Q ss_pred EEEEEccCCCCc-ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|++++|.+. +.+|..+..+++|+.|+|++|.+++. ..++.+++|+.|+|++|.+++.+|..+..+++|+.|+|+
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 444555555554 44454445555555555555555433 344455555555555555554444444445555555555
Q ss_pred CCcCC
Q 009236 501 GNTLS 505 (539)
Q Consensus 501 ~N~l~ 505 (539)
+|.++
T Consensus 97 ~N~i~ 101 (149)
T 2je0_A 97 GNKIK 101 (149)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 55554
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.13 E-value=8.9e-11 Score=120.56 Aligned_cols=88 Identities=23% Similarity=0.285 Sum_probs=55.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.|++..+..|.+|++|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 55566666666655555566666666666666666655555566666666666666666655566666666666666666
Q ss_pred CcCCccCCc
Q 009236 502 NTLSGRVPA 510 (539)
Q Consensus 502 N~l~g~iP~ 510 (539)
|+|+ .+|.
T Consensus 146 N~l~-~l~~ 153 (361)
T 2xot_A 146 NQIS-RFPV 153 (361)
T ss_dssp SCCC-SCCG
T ss_pred CcCC-eeCH
Confidence 6666 3443
No 29
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.2e-10 Score=118.50 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=35.4
Q ss_pred CcchhccCCCCCeEEccc-CccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCC
Q 009236 436 LPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 436 ~p~~l~~L~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
+|. |..+++|+.|+|++ |.|.+..|..|+.|++|+.|+|++|+|++..|..|.+|++|+.|+|++|+|+
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 444 55555555555553 5555444444555555555555555555544445555555555555555555
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.12 E-value=4.7e-11 Score=126.01 Aligned_cols=108 Identities=21% Similarity=0.244 Sum_probs=70.2
Q ss_pred CCCCcc--cccccCCCC----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCc-ccccCCCCCcEEec
Q 009236 403 QHPWSG--ADCQFDRTS----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDL 475 (539)
Q Consensus 403 ~~~w~g--v~C~~~~~~----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~L~L 475 (539)
.|.|.+ +.|+..... ....++.|+|++|.+.+..|..+++|++|++|+|++|.+.+.++ ..+..+++|+.|+|
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 345555 667643211 11246778888888877777777777777777777777765553 45667777777777
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCcCCccCCc
Q 009236 476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPA 510 (539)
Q Consensus 476 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~ 510 (539)
++|++++..|..++++++|++|+|++|++++.+|.
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence 77777766666666666666666666666654443
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=1.5e-10 Score=113.64 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccC
Q 009236 392 FGWNGDPCVPQQHPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGT 466 (539)
Q Consensus 392 ~~W~~~~C~~~~~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~ 466 (539)
+.|.+..|... ..|..+.|+...... ...++.|+|++|++.+..+..+.++++|+.|+|++|.++...+..+..
T Consensus 5 C~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~ 83 (270)
T 2o6q_A 5 CKKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83 (270)
T ss_dssp BGGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS
T ss_pred CCCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC
Confidence 46776666411 145667776432211 123677888888887666667777888888888877777444444566
Q ss_pred CCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCCccCCcccc
Q 009236 467 IASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 513 (539)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~ 513 (539)
+++|+.|+|++|++++..+..+.++++|+.|+|++|++++..|..++
T Consensus 84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC
Confidence 77777777777777754445556666666666666666654444443
No 32
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.11 E-value=1.9e-10 Score=114.49 Aligned_cols=93 Identities=26% Similarity=0.317 Sum_probs=67.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|++..+..|.+|++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.++++|+.|+|++
T Consensus 102 L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence 66777888877766666777777888888888877766566667777788888888877744344556777788888888
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|+++ .+|..+..+
T Consensus 182 N~l~-~ip~~~~~~ 194 (290)
T 1p9a_G 182 NSLY-TIPKGFFGS 194 (290)
T ss_dssp SCCC-CCCTTTTTT
T ss_pred CcCC-ccChhhccc
Confidence 8777 667665543
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.10 E-value=1e-10 Score=126.44 Aligned_cols=96 Identities=24% Similarity=0.269 Sum_probs=84.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..|..+.++++|++|+|++|.+.+..|..++.+++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 58899999999998888899999999999999999998888899999999999999999998877789999999999999
Q ss_pred CCcCCc-cCCccccccc
Q 009236 501 GNTLSG-RVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g-~iP~~l~~l~ 516 (539)
+|.+++ .+|..++++.
T Consensus 107 ~n~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLT 123 (549)
T ss_dssp TCCCSSSCSSCSCTTCT
T ss_pred CCcccccchhhhhhccC
Confidence 999986 4566665553
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=2.3e-10 Score=109.73 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=72.6
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.|....+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence 778888888887555566788888888888888888666666788888888888888888 7888888888888888888
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|++++..+..+..+
T Consensus 145 N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 145 NQLKSIPHGAFDRL 158 (229)
T ss_dssp SCCCCCCTTTTTTC
T ss_pred CcCCccCHHHHhCC
Confidence 88885444445544
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.09 E-value=1.3e-10 Score=119.27 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=95.8
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhc-cCCCCCeEEcccCccCccCcccccCCCCCcEEeccC
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 477 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 477 (539)
|.+..+.|+...... ...++.|+|++|.|++..+..+. ++++|+.|+|++|.+++..|..|..+++|+.|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 457778887543211 12377899999999988888787 999999999999999988888899999999999999
Q ss_pred CcCCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 478 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 478 N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
|+|++..+..+.++++|+.|+|++|++++..|..+.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 999977777899999999999999999987787777654
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.09 E-value=3.1e-10 Score=111.66 Aligned_cols=96 Identities=24% Similarity=0.290 Sum_probs=77.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..++.+++|+.|+|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 37788888888887777778888888888888888887766677888888888888888887666677888888888888
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|++++..|..++++.
T Consensus 190 ~N~l~~~~~~~~~~l~ 205 (272)
T 3rfs_A 190 QNQLKSVPDGVFDRLT 205 (272)
T ss_dssp SSCCSCCCTTTTTTCT
T ss_pred CCcCCccCHHHHhCCc
Confidence 8888876666565554
No 37
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.07 E-value=1.6e-10 Score=104.90 Aligned_cols=87 Identities=28% Similarity=0.325 Sum_probs=65.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCcc-CchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++. .+..+..+++|+.|+|
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 477788888887765 6777888888888888888877777777788888888888888743 2267778888888888
Q ss_pred cCCcCCccCC
Q 009236 500 NGNTLSGRVP 509 (539)
Q Consensus 500 ~~N~l~g~iP 509 (539)
++|.+++..+
T Consensus 128 ~~N~l~~~~~ 137 (168)
T 2ell_A 128 FNCEVTNLND 137 (168)
T ss_dssp CSSGGGTSTT
T ss_pred eCCcCcchHH
Confidence 8888874433
No 38
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.07 E-value=4.2e-10 Score=105.88 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=51.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 78 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 55566666666654444455666666666666666654444455666666666666666644444455566666666666
Q ss_pred CcCCccCC
Q 009236 502 NTLSGRVP 509 (539)
Q Consensus 502 N~l~g~iP 509 (539)
|.+.+..|
T Consensus 158 N~~~~~~~ 165 (208)
T 2o6s_A 158 NPWDCTCP 165 (208)
T ss_dssp CCBCCCTT
T ss_pred CCeecCCC
Confidence 66655444
No 39
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.07 E-value=2.5e-10 Score=124.34 Aligned_cols=90 Identities=28% Similarity=0.365 Sum_probs=54.3
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|++ +|. +++|++|+.|+|++|.++ .+|..++.|++|+.|+|++|++++ +| .+++|++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4456666666665 444 666666666666666666 556666666666666666666664 55 566666666666666
Q ss_pred CcCCccC-Cccccccc
Q 009236 502 NTLSGRV-PAALGGRL 516 (539)
Q Consensus 502 N~l~g~i-P~~l~~l~ 516 (539)
|+|++.+ |..+++++
T Consensus 518 N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCP 533 (567)
T ss_dssp SCCCSSSTTGGGGGCT
T ss_pred CCCCCCCCcHHHhcCC
Confidence 6666554 55555543
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.06 E-value=4.3e-10 Score=110.59 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=79.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 48889999999998777778999999999999999998777778999999999999999998777778999999999999
Q ss_pred CCcCCccCC
Q 009236 501 GNTLSGRVP 509 (539)
Q Consensus 501 ~N~l~g~iP 509 (539)
+|.+.+..|
T Consensus 214 ~N~~~~~~~ 222 (272)
T 3rfs_A 214 DNPWDCTCP 222 (272)
T ss_dssp SSCBCCCTT
T ss_pred CCCccccCc
Confidence 999998776
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.05 E-value=2.6e-10 Score=124.94 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=82.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.|++..+..|.+|++|++|+|++|.+++..|..|.+|++|++|+|++|++++..|..|.+|++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 47899999999998777889999999999999999997777789999999999999999997666778999999999999
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|++++..+..++++.
T Consensus 133 ~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 133 ETNLASLENFPIGHLK 148 (635)
T ss_dssp TSCCCCSTTCCCTTCT
T ss_pred CCcCCCCChhhhhcCc
Confidence 9999865555666554
No 42
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.05 E-value=5.7e-11 Score=135.13 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=69.5
Q ss_pred CcchhccCCCCCeEEcccCccCc-----------------cCccccc--CCCCCcEEeccCCcCCccCchhhcCCCCCCE
Q 009236 436 LPNGISKLRHLQSINLSGNSIRG-----------------AIPSSLG--TIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (539)
Q Consensus 436 ~p~~l~~L~~L~~L~Ls~N~l~g-----------------~ip~~l~--~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 496 (539)
+|..|++|++|+.|+|++|.++| .+|..++ +|++|+.|+|++|++.|.+|..+++|++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78888899999999999999998 4888887 8999999999999999999988999999999
Q ss_pred EeccCCc-CCc-cCCcccccc
Q 009236 497 LNLNGNT-LSG-RVPAALGGR 515 (539)
Q Consensus 497 L~L~~N~-l~g-~iP~~l~~l 515 (539)
|+|++|+ ++| .+|..++++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L 540 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRL 540 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHH
T ss_pred EECcCCCCcccccchHHHHhh
Confidence 9999997 888 788777654
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.05 E-value=2.3e-10 Score=125.41 Aligned_cols=95 Identities=23% Similarity=0.327 Sum_probs=82.9
Q ss_pred EEEEEEccCCCCc-ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+. +.+|..+..+++|+.|+|++|.+++..|..|+.|++|+.|+|++|++++..|..+.++++|+.|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 3678999998754 456778899999999999999999888999999999999999999999888888999999999999
Q ss_pred cCCcCCccCCcccccc
Q 009236 500 NGNTLSGRVPAALGGR 515 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l 515 (539)
++|+|++..|..+..+
T Consensus 550 s~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHF 565 (635)
T ss_dssp TTSCCCBCCSSCTTCC
T ss_pred CCCcCCCCCHHHHHhh
Confidence 9999998888877655
No 44
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.03 E-value=7.5e-10 Score=108.70 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=74.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++..+..+.++++|+.|+|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 47788888888887777778888888888888888886655667888888888888888886666668888888888888
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|++++..+..+..+
T Consensus 190 ~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSL 204 (270)
T ss_dssp SSCCSCCCTTTTTTC
T ss_pred CCcCCcCCHHHhccc
Confidence 888885444445444
No 45
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=4.7e-10 Score=114.17 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=86.2
Q ss_pred CCCcccccccC-CCC------ceeEEEEEEccC-CCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEec
Q 009236 404 HPWSGADCQFD-RTS------HKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL 475 (539)
Q Consensus 404 ~~w~gv~C~~~-~~~------~~~~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~L 475 (539)
|.|..+.|+.. ... ....|+.|+|++ |.|.+..+..|.+|++|+.|+|++|.|++..|..|..|++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 57888888764 211 113488999996 9999988899999999999999999999999999999999999999
Q ss_pred cCCcCCccCchhhcCCCCCCEEeccCCcCCc
Q 009236 476 SYNFFNGSIPESLGQLTALRRLNLNGNTLSG 506 (539)
Q Consensus 476 s~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g 506 (539)
++|+|++..|..+..++ |+.|+|.+|.|..
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 99999965555565555 9999999999974
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.03 E-value=4.2e-10 Score=118.64 Aligned_cols=94 Identities=28% Similarity=0.325 Sum_probs=64.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+.+..|..++.+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 380 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC
Confidence 66677777777766666777777777777777777766666777777777777777777766677777777777777777
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|++++..+..+..+
T Consensus 381 N~l~~~~~~~~~~l 394 (455)
T 3v47_A 381 NQLKSVPDGIFDRL 394 (455)
T ss_dssp SCCSCCCTTTTTTC
T ss_pred CccccCCHhHhccC
Confidence 77774333333433
No 47
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=3.1e-10 Score=127.30 Aligned_cols=92 Identities=27% Similarity=0.450 Sum_probs=68.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 3667777777777 67777777777777777777777 67777777777777777777776 677777777777777777
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|.|+|.+|..+..+
T Consensus 325 ~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 325 GNPLEKQFLKILTEK 339 (727)
T ss_dssp TSCCCSHHHHHHHHH
T ss_pred CCccCCCChHHHhhc
Confidence 777777777766543
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.00 E-value=6e-10 Score=109.56 Aligned_cols=94 Identities=20% Similarity=0.309 Sum_probs=54.4
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..++++++|+.|+|++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence 45555555555554444555555566666666655555555555566666666666666544444566666666666666
Q ss_pred CcCCc-cCCcccccc
Q 009236 502 NTLSG-RVPAALGGR 515 (539)
Q Consensus 502 N~l~g-~iP~~l~~l 515 (539)
|.+++ .+|..++++
T Consensus 134 n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 134 NLIQSFKLPEYFSNL 148 (276)
T ss_dssp SCCCCCCCCGGGGGC
T ss_pred CccceecCchhhccC
Confidence 66654 356555544
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.00 E-value=2e-10 Score=102.13 Aligned_cols=94 Identities=23% Similarity=0.256 Sum_probs=82.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCcc-CchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+. ..++++++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .|..++.+++|+.|+|
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 488999999999976 7899999999999999999988999888899999999999999963 4588999999999999
Q ss_pred cCCcCCccCC---ccccccc
Q 009236 500 NGNTLSGRVP---AALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP---~~l~~l~ 516 (539)
++|.+++..+ ..+..++
T Consensus 121 ~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp TTCGGGGSTTHHHHHHHHCT
T ss_pred cCCcccchHHHHHHHHHHCC
Confidence 9999996554 3455544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.00 E-value=7.3e-10 Score=113.09 Aligned_cols=94 Identities=27% Similarity=0.376 Sum_probs=80.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..+.++++|+.|+|++|++++..+..++++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 58899999999998777789999999999999999998888889999999999999999995544558999999999999
Q ss_pred CCcCCccCCc--ccccc
Q 009236 501 GNTLSGRVPA--ALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~--~l~~l 515 (539)
+|+++ .+|. .+.++
T Consensus 133 ~n~l~-~l~~~~~~~~l 148 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHL 148 (353)
T ss_dssp TCCCS-SSCSSCSCTTC
T ss_pred CCCCc-ccCchhhhccC
Confidence 99998 5665 45544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.99 E-value=6.9e-10 Score=110.79 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=63.4
Q ss_pred EEEEEccCCCCcc-cCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 5667777777665 456666677777777777777776666666677777777777777765555566667777777777
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|++++..|..+..+
T Consensus 232 ~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 232 LNHIMTSKKQELQHF 246 (306)
T ss_dssp TSCCCBCSSSSCCCC
T ss_pred CCCCcccCHHHHHhh
Confidence 777776666665554
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=5.2e-10 Score=107.66 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=73.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCc-cCccCcccccCCCCCcEEeccC-CcCCccCchhhcCCCCCCEEe
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~ 498 (539)
.++.|+|++|++++..+..+.++++|+.|+|++|. ++...+..+..+++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47788888888887777788888888888888886 7755556788888888888888 888866566788888888888
Q ss_pred ccCCcCCccCCcccccc
Q 009236 499 LNGNTLSGRVPAALGGR 515 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l 515 (539)
|++|.+++ +|. ++++
T Consensus 112 l~~n~l~~-lp~-~~~l 126 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKV 126 (239)
T ss_dssp EEEECCCS-CCC-CTTC
T ss_pred CCCCCCcc-ccc-cccc
Confidence 88888874 665 4433
No 53
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.98 E-value=2.5e-10 Score=126.13 Aligned_cols=95 Identities=13% Similarity=0.261 Sum_probs=72.0
Q ss_pred EEEEEEccCCCCccc-----------------Ccchhc--cCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCc-C
Q 009236 421 VIDGLGLDNQGLRGF-----------------LPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F 480 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l 480 (539)
.++.|+|++|.++|. +|..++ +|++|++|+|++|.+.|.+|..++++++|+.|+|++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 467788888888875 788877 88888888888888888888888888888888888887 7
Q ss_pred Cc-cCchhhcCC------CCCCEEeccCCcCCccCCc--cccccc
Q 009236 481 NG-SIPESLGQL------TALRRLNLNGNTLSGRVPA--ALGGRL 516 (539)
Q Consensus 481 ~g-~iP~~l~~l------~~L~~L~L~~N~l~g~iP~--~l~~l~ 516 (539)
+| .+|..++++ ++|+.|+|++|+++ .+|. .++++.
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~ 330 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK 330 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence 77 777776665 67777777777777 6776 555543
No 54
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=7.6e-10 Score=101.39 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=79.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 37899999999997777778999999999999999998777778999999999999999996555567889999999999
Q ss_pred CCcCCccCC
Q 009236 501 GNTLSGRVP 509 (539)
Q Consensus 501 ~N~l~g~iP 509 (539)
+|.+.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999998766
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.97 E-value=1.1e-09 Score=108.15 Aligned_cols=96 Identities=25% Similarity=0.257 Sum_probs=74.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+.++++|+.|+|+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 37788888888887666678888888888888888886666668888888888888888887778888888888888888
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|.+++..|..+.+++
T Consensus 210 ~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 210 ANNLSALPTEALAPLR 225 (285)
T ss_dssp SSCCSCCCHHHHTTCT
T ss_pred CCcCCcCCHHHcccCc
Confidence 8888865444455543
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.97 E-value=1.3e-10 Score=130.31 Aligned_cols=92 Identities=28% Similarity=0.449 Sum_probs=76.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.+. .+|..+.+|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..+++|++|+.|+|+
T Consensus 225 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 225 LWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 3678888888887 67777888888888888888888 88888888888888888888888 788888888888888888
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|.|+ .||..|+++.
T Consensus 302 ~N~l~-~lp~~~~~l~ 316 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLC 316 (727)
T ss_dssp SSCCC-CCCSSTTSCT
T ss_pred CCCCC-ccChhhhcCC
Confidence 88887 7887777664
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.97 E-value=1.1e-09 Score=108.08 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=48.5
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCc-cCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|.+.+..|..+.++++|+.|+|++|. +....|..+..+++|+.|+|++|.+++..|..+.++++|+.|+|+
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 4455555555555445555555555555555554 443334455555555555555555555445555555555555555
Q ss_pred CCcCCccCCcccc
Q 009236 501 GNTLSGRVPAALG 513 (539)
Q Consensus 501 ~N~l~g~iP~~l~ 513 (539)
+|.+++..+..++
T Consensus 138 ~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 138 DNALQALPDDTFR 150 (285)
T ss_dssp SSCCCCCCTTTTT
T ss_pred CCcccccCHhHhc
Confidence 5555533333333
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.96 E-value=7e-10 Score=100.64 Aligned_cols=93 Identities=26% Similarity=0.271 Sum_probs=73.0
Q ss_pred EEEEEccCCCCc-ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|.+. +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|..+.++++|+.|+|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 677888888887 77888888888888888888888855 678888888888888888887788877778888888888
Q ss_pred CCcCCccC-Cccccccc
Q 009236 501 GNTLSGRV-PAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~i-P~~l~~l~ 516 (539)
+|.+++.. +..+.+++
T Consensus 104 ~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLE 120 (168)
T ss_dssp SSSCCSSGGGGGGSSCS
T ss_pred CCccCcchhHHHHhcCC
Confidence 88887421 14555443
No 59
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=1.1e-09 Score=119.35 Aligned_cols=86 Identities=28% Similarity=0.391 Sum_probs=80.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccC-chhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-P~~l~~l~~L~~L~L 499 (539)
.|+.|+|++|.|+ .+|..+++|++|+.|+|++|.+++ +| .++.|++|+.|+|++|++++.. |..++.|++|+.|+|
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4889999999999 889999999999999999999996 78 8999999999999999999887 999999999999999
Q ss_pred cCCcCCccCC
Q 009236 500 NGNTLSGRVP 509 (539)
Q Consensus 500 ~~N~l~g~iP 509 (539)
++|.+++.+|
T Consensus 541 ~~N~l~~~~~ 550 (567)
T 1dce_A 541 QGNSLCQEEG 550 (567)
T ss_dssp TTSGGGGSSS
T ss_pred cCCcCCCCcc
Confidence 9999997655
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=115.61 Aligned_cols=112 Identities=15% Similarity=0.178 Sum_probs=85.5
Q ss_pred CCcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCc
Q 009236 405 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 479 (539)
Q Consensus 405 ~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 479 (539)
.|..+.|...... ....++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|.+|++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 3667778643221 11247788899999888888888888888888888888888888888888888888888888
Q ss_pred CCccCchhhcCCCCCCEEeccCCcCCccCCccccccc
Q 009236 480 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 480 l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~ 516 (539)
+++..+..+.++++|+.|+|++|.+++..|..+.++.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 8854445678888888888888888877776665543
No 61
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.95 E-value=7.9e-10 Score=121.05 Aligned_cols=95 Identities=18% Similarity=0.094 Sum_probs=79.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..|..|+++++|++|+|++|.+.+..|..|+++++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 47889999999988888888899999999999998888888888888899999999998888888888888888888888
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|.+++..|..++++
T Consensus 114 ~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQ 128 (606)
T ss_dssp TSCCSCGGGSCCTTC
T ss_pred ccCcccCCcchhccC
Confidence 888886545555544
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.95 E-value=3.3e-10 Score=113.75 Aligned_cols=106 Identities=20% Similarity=0.116 Sum_probs=79.5
Q ss_pred EEEEEEccCCCCcccCcchhccC-----CCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCcc--Cchhh--cCC
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL 491 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP~~l--~~l 491 (539)
.++.|+|++|.+++. |..++.+ ++|++|+|++|.+.+..|..++.+++|+.|+|++|++.|. +|..+ +++
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 477888999988887 7777777 8899999999999887778888899999999999988776 34455 788
Q ss_pred CCCCEEeccCCcCCc--cCCccc----ccccccccccccccc
Q 009236 492 TALRRLNLNGNTLSG--RVPAAL----GGRLLHRASFKSMWY 527 (539)
Q Consensus 492 ~~L~~L~L~~N~l~g--~iP~~l----~~l~~~~l~~~~~~~ 527 (539)
++|+.|+|++|++++ .++..+ .+|..++++.|.+..
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 889999999998873 333332 344455555554433
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.95 E-value=1.2e-09 Score=119.60 Aligned_cols=95 Identities=25% Similarity=0.260 Sum_probs=55.3
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCcc---CcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA---IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 498 (539)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+. .+..+..+++|+.|+|++|++++..|..+.++++|+.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 55566666666655555566666666666666665542 223455566666666666666655555566666666666
Q ss_pred ccCCcCCccCCccccccc
Q 009236 499 LNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l~ 516 (539)
|++|++++.+|..+.++.
T Consensus 507 Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp CCSSCCCGGGGGGGTTCC
T ss_pred CCCCccCcCChhHhCccc
Confidence 666666655555555444
No 64
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=101.51 Aligned_cols=86 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.|++..+..|.+|++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 37899999999999888899999999999999999998888899999999999999999996555678999999999999
Q ss_pred CCcCCc
Q 009236 501 GNTLSG 506 (539)
Q Consensus 501 ~N~l~g 506 (539)
+|.+..
T Consensus 135 ~N~~~C 140 (193)
T 2wfh_A 135 ANPLYC 140 (193)
T ss_dssp SSCEEC
T ss_pred CCCeec
Confidence 999864
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.94 E-value=1.6e-09 Score=108.12 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=91.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCc-cCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 7899999999999999999999999999999999987 688899999999999999999998889999999999999999
Q ss_pred CCcCCccCCcccccc---cccccccccc
Q 009236 501 GNTLSGRVPAALGGR---LLHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l---~~~~l~~~~~ 525 (539)
+|.+++..+..+.++ ..++++.|.+
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCccCccChhhccCcccCCEeECCCCCC
Confidence 999997666566544 4455555554
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.94 E-value=1.7e-09 Score=106.25 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=86.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCc-cCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..+..++.+++|+.|+|++|.+++ .+|..+.++++|+.|+|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 48899999999999888899999999999999999998777789999999999999999987 47999999999999999
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|++++..+..+..+.
T Consensus 157 s~N~l~~~~~~~~~~l~ 173 (276)
T 2z62_A 157 SSNKIQSIYCTDLRVLH 173 (276)
T ss_dssp CSSCCCEECGGGGHHHH
T ss_pred CCCCCCcCCHHHhhhhh
Confidence 99999977666666553
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=1.7e-09 Score=118.46 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=77.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCc-cCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+..|..|++|++|++|+|++|.+.+..|..++++++|+.|+|++|.+.+ .+|..++++++|++|+|
T Consensus 81 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp TCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred hcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence 37788888888887778888888888888888888887666778888888888888888875 67888888888888888
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|++++..|..++.+.
T Consensus 161 s~n~l~~~~~~~~~~l~ 177 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLR 177 (606)
T ss_dssp CSSCCCEECTTTTHHHH
T ss_pred cCCcceecChhhhhhhh
Confidence 88888877777676654
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=1.2e-09 Score=101.88 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=54.4
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+++..+..++.|++|+.|+|++|.+++..|..++.+++|+.|+|++|.+.+.+| .+..+++|+.|+|++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF 168 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC
Confidence 5566666666666566666666666666666666666666666666666666666666333555 466666666666666
Q ss_pred CcCCc
Q 009236 502 NTLSG 506 (539)
Q Consensus 502 N~l~g 506 (539)
|.+++
T Consensus 169 n~i~~ 173 (197)
T 4ezg_A 169 DGVHD 173 (197)
T ss_dssp BCCCC
T ss_pred CCCcC
Confidence 66663
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.93 E-value=2.4e-09 Score=117.20 Aligned_cols=94 Identities=26% Similarity=0.349 Sum_probs=50.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+++..|..|.+|++|++|+|++|.+++..|..+++|++|+.|+|++|++++..|..++++++|++|+|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 44555555555544445555555555555555555544455555555555555555555544444555555555555555
Q ss_pred CcCCc-cCCcccccc
Q 009236 502 NTLSG-RVPAALGGR 515 (539)
Q Consensus 502 N~l~g-~iP~~l~~l 515 (539)
|.+++ .+|..++++
T Consensus 138 n~l~~~~lp~~~~~l 152 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNL 152 (606)
T ss_dssp SCCCCCCCCGGGGTC
T ss_pred CcccceechHhHhhc
Confidence 55543 455555544
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.92 E-value=1.8e-09 Score=114.05 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=90.3
Q ss_pred CcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcC
Q 009236 406 WSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (539)
Q Consensus 406 w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 480 (539)
|..+.|...... ....++.|+|++|++++..+..|.+|++|+.|+|++|.+++..|..+..+++|+.|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 567777643321 113578999999999998899999999999999999999988889999999999999999999
Q ss_pred CccCchhhcCCCCCCEEeccCCcCCccCCcccccc
Q 009236 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 481 ~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
++..+..+.++++|+.|+|++|++++..+..+.++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 96666678999999999999999985444445444
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.92 E-value=3.4e-09 Score=105.34 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=60.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|. .+|..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 667777777776 5666677777777777777777766666677777777777777777755555566777777777777
Q ss_pred CcCCc
Q 009236 502 NTLSG 506 (539)
Q Consensus 502 N~l~g 506 (539)
|++++
T Consensus 158 N~l~~ 162 (290)
T 1p9a_G 158 NNLTE 162 (290)
T ss_dssp SCCSC
T ss_pred CcCCc
Confidence 77773
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=2.6e-09 Score=99.64 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=81.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+. .++.+..+++|+.|+|++|.+++..|..++.|++|+.|+|++|++++..|..++.+++|+.|+|+
T Consensus 67 ~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 67 NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 3789999999665 44689999999999999999999889999999999999999999999899999999999999999
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|.+.+.+| .+.+++
T Consensus 145 ~n~~i~~~~-~l~~l~ 159 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLP 159 (197)
T ss_dssp SCTBCCCCG-GGGGCS
T ss_pred CCCCccccH-hhcCCC
Confidence 998444676 455554
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.89 E-value=3.3e-09 Score=107.05 Aligned_cols=91 Identities=23% Similarity=0.273 Sum_probs=83.3
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCC
Confidence 788999999999988999999999999999999999888888999999999999999999 8999999999999999999
Q ss_pred CcCCccCCcccc
Q 009236 502 NTLSGRVPAALG 513 (539)
Q Consensus 502 N~l~g~iP~~l~ 513 (539)
|++++..+..+.
T Consensus 273 N~i~~~~~~~f~ 284 (330)
T 1xku_A 273 NNISAIGSNDFC 284 (330)
T ss_dssp SCCCCCCTTSSS
T ss_pred CcCCccChhhcC
Confidence 999965555553
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.89 E-value=2.3e-09 Score=119.02 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=50.6
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..|..+++|++|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..++++++|++|+|++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 44555555555554455555555555555555555533333455555555555555555544445555566666666666
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|.+++..|..++++
T Consensus 131 n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 131 NGLSSTKLGTQVQL 144 (680)
T ss_dssp SCCSCCCCCSSSCC
T ss_pred CcccccCchhhccc
Confidence 66655555544433
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.89 E-value=1.7e-09 Score=116.15 Aligned_cols=92 Identities=23% Similarity=0.205 Sum_probs=65.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..|..+.++++|++|+|++|.+++..|..++++++|+.|+|++|+++ .+|.. .+++|++|+|++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 667777777777766667777777777777777777666777777777777777777777 56655 677777777777
Q ss_pred CcCCc-cCCccccccc
Q 009236 502 NTLSG-RVPAALGGRL 516 (539)
Q Consensus 502 N~l~g-~iP~~l~~l~ 516 (539)
|.+++ .+|..++++.
T Consensus 100 N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 100 NAFDALPICKEFGNMS 115 (520)
T ss_dssp SCCSSCCCCGGGGGCT
T ss_pred CccccccchhhhccCC
Confidence 77765 4666665553
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.88 E-value=3e-09 Score=107.57 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=82.1
Q ss_pred CCCcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|..+.|+..... ....++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46888888743321 1124788999999999888888999999999999999999888889999999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCccCCcccccc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
+++ .+|..+. ++|+.|+|++|++++..+..+.++
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l 146 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL 146 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCC
Confidence 887 6666544 567777777776664333334433
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.88 E-value=2.4e-09 Score=116.33 Aligned_cols=93 Identities=27% Similarity=0.261 Sum_probs=79.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|.. .+++|++|+|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 4788999999998887888999999999999999999888888999999999999999988 67776 78889999999
Q ss_pred CCcCCc-cCCccccccc
Q 009236 501 GNTLSG-RVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g-~iP~~l~~l~ 516 (539)
+|++++ .+|..++++.
T Consensus 130 ~N~l~~l~~p~~~~~l~ 146 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLT 146 (562)
T ss_dssp SSCCSBCCCCGGGGGCT
T ss_pred CCCccccCchHhhcccC
Confidence 998886 4567777654
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=122.20 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=44.3
Q ss_pred EEEEEccCCCCcccC-cchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchh--hcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~--l~~l~~L~~L~ 498 (539)
|+.|+|++|.+.+.+ |..|.+|++|+.|+|++|.+.+..|..++.|++|+.|+|++|.+++.+|.. ++++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 344444444333333 334555555555555555555555555555555555555555555544443 55555555555
Q ss_pred ccCCcCCcc
Q 009236 499 LNGNTLSGR 507 (539)
Q Consensus 499 L~~N~l~g~ 507 (539)
|++|.+++.
T Consensus 130 Ls~N~l~~~ 138 (844)
T 3j0a_A 130 LSKNQIRSL 138 (844)
T ss_dssp EESCCCCCC
T ss_pred CCCCccccc
Confidence 555555543
No 79
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=115.12 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=57.5
Q ss_pred EEEEEccCCCCcc--cCcchhccCCCCCeEEcccCccCccCccc-ccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 498 (539)
++.|+|++|.+.+ .+|..+.++++|+.|+|++|.+.+.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 5566666666665 45555666666666666666666545543 55666666666666666666665443 5677777
Q ss_pred ccCCcCCccCCcccccc
Q 009236 499 LNGNTLSGRVPAALGGR 515 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l 515 (539)
|++|+++ .+|..+.++
T Consensus 428 Ls~N~l~-~ip~~~~~l 443 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVKL 443 (520)
T ss_dssp CCSSCCC-CCCGGGGGC
T ss_pred CCCCccc-ccchhhhcC
Confidence 7777777 677655544
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.86 E-value=2.4e-09 Score=108.30 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=81.5
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 3778999999999888888999999999999999999888888999999999999999998 889989999999999999
Q ss_pred CCcCCccCCccccc
Q 009236 501 GNTLSGRVPAALGG 514 (539)
Q Consensus 501 ~N~l~g~iP~~l~~ 514 (539)
+|++++..+..+..
T Consensus 273 ~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 273 TNNITKVGVNDFCP 286 (332)
T ss_dssp SSCCCBCCTTSSSC
T ss_pred CCCCCccChhHccc
Confidence 99998655555544
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.86 E-value=3.4e-09 Score=111.95 Aligned_cols=93 Identities=23% Similarity=0.257 Sum_probs=75.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|++++. | .+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 198 L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 198 LKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp CCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 77888888888854 3 578888888999999988888888888888899999999988888888888888899999998
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|++++..+..+..+.
T Consensus 276 N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 276 NNLSSLPHDLFTPLR 290 (452)
T ss_dssp SCCSCCCTTSSTTCT
T ss_pred CcCCccChHHhcccc
Confidence 888855555555443
No 82
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.86 E-value=4e-09 Score=115.58 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=83.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.+.+..|..|++|++|+.|+|++|.+++..+..++.+++|+.|+|++|.+++..|..++++++|+.|+|+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 37788999998888777788888999999999998885555556888899999999999888888888888899999999
Q ss_pred CCcCCccCCcccccccccccccccc
Q 009236 501 GNTLSGRVPAALGGRLLHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~~~l~~~~~ 525 (539)
+|.+++.-+..+.+|..++++.|.+
T Consensus 180 ~N~l~~~~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 180 SNRLTHVDLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp TSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCCCCCcChhhhhhhhhhhcccCcc
Confidence 9988865445556665555555544
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.85 E-value=3.8e-09 Score=112.23 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=65.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.+.+..+..+.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..|..+.++++|+.|+|++
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 161 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC
Confidence 66777777777755555567777777777777777777777777777777777777777766667777777777777777
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|++++..+..+.++
T Consensus 162 n~l~~~~~~~l~~l 175 (477)
T 2id5_A 162 CNLTSIPTEALSHL 175 (477)
T ss_dssp CCCSSCCHHHHTTC
T ss_pred CcCcccChhHhccc
Confidence 77774433334443
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.84 E-value=6.5e-09 Score=113.90 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=63.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.|.+..+..++++++|+.|+|++|.+.+..|..++.+++|+.|+|++|.+++. + ++.+++|+.|+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~ 200 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVS 200 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcc
Confidence 377888888888865555568888888888888888888888888888888888888888854 2 4456667777777
Q ss_pred CCcCCc
Q 009236 501 GNTLSG 506 (539)
Q Consensus 501 ~N~l~g 506 (539)
+|.+++
T Consensus 201 ~n~l~~ 206 (597)
T 3oja_B 201 YNLLST 206 (597)
T ss_dssp SSCCSE
T ss_pred cCcccc
Confidence 776664
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.84 E-value=3.8e-09 Score=114.48 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=78.1
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccC-ccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..+.++++|+.|+|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 3778888888888888888888888888888888887 578888888888888888888888777888888888888888
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|++++..|..+.+++
T Consensus 502 ~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp CSSCCSCCCTTTTTTCT
T ss_pred CCCcCCCCCHHHhhccc
Confidence 88888876666666554
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.84 E-value=3.7e-09 Score=106.70 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=75.8
Q ss_pred CCCcccccccCCCC-----ceeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC
Q 009236 404 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 478 (539)
Q Consensus 404 ~~w~gv~C~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N 478 (539)
|.|..+.|+..... ....++.|+|++|++++..+..+.++++|+.|+|++|.+++..|..++.+++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 56888888643221 1134778999999999877778999999999999999999888889999999999999999
Q ss_pred cCCccCchhhcCCCCCCEEeccCCcCCcc
Q 009236 479 FFNGSIPESLGQLTALRRLNLNGNTLSGR 507 (539)
Q Consensus 479 ~l~g~iP~~l~~l~~L~~L~L~~N~l~g~ 507 (539)
+++ .+|..+. ++|+.|++++|.+++.
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKV 136 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBB
T ss_pred cCC-ccChhhc--ccccEEECCCCccccc
Confidence 887 5665443 4555555555555533
No 87
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.84 E-value=3.7e-09 Score=111.34 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=74.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|+++. +| .+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 187 L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 264 (440)
T 3zyj_A 187 LRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264 (440)
T ss_dssp CCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred cCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence 7788888888873 44 478888888888888888888888888888888888888888888788888888888888888
Q ss_pred CcCCccCCcccccc
Q 009236 502 NTLSGRVPAALGGR 515 (539)
Q Consensus 502 N~l~g~iP~~l~~l 515 (539)
|++++..+..+..+
T Consensus 265 N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 265 NNLTLLPHDLFTPL 278 (440)
T ss_dssp SCCCCCCTTTTSSC
T ss_pred CCCCccChhHhccc
Confidence 88885555545444
No 88
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.84 E-value=5.7e-09 Score=109.85 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=86.5
Q ss_pred CcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcC
Q 009236 406 WSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 480 (539)
Q Consensus 406 w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 480 (539)
|..+.|....... ...++.|+|++|++.+..+..|.+|++|+.|+|++|.+.+..+..|..+++|+.|+|++|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 5677786432211 12467899999999988888899999999999999999988778899999999999999999
Q ss_pred CccCchhhcCCCCCCEEeccCCcCCccCCcccccc
Q 009236 481 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 515 (539)
Q Consensus 481 ~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l 515 (539)
++..+..+..+++|+.|+|++|.+++..+..+.++
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 159 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence 86555678889999999999998885544455444
No 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.84 E-value=4.9e-09 Score=95.91 Aligned_cols=87 Identities=20% Similarity=0.272 Sum_probs=66.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCch--hhcCCCCCCEEe
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN 498 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~ 498 (539)
.++.|+|++|.+++. +.+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 377888888888865 57788888888888888888554444578888888888888885 6665 777888888888
Q ss_pred ccCCcCCccCCcc
Q 009236 499 LNGNTLSGRVPAA 511 (539)
Q Consensus 499 L~~N~l~g~iP~~ 511 (539)
|++|.++ .+|..
T Consensus 120 l~~N~i~-~~~~~ 131 (176)
T 1a9n_A 120 ILRNPVT-NKKHY 131 (176)
T ss_dssp CCSSGGG-GSTTH
T ss_pred ecCCCCC-CcHhH
Confidence 8888887 56653
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.84 E-value=6.1e-09 Score=107.68 Aligned_cols=105 Identities=17% Similarity=0.206 Sum_probs=85.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.+....+..++.+++|+.|+|++|.+++..|..+.++++|+.|+|+
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 48899999999998888889999999999999999994433446889999999999999998778889999999999999
Q ss_pred CCcCCccCCcccccccccccccccc
Q 009236 501 GNTLSGRVPAALGGRLLHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~~~l~~~~~ 525 (539)
+|.+++.-...+.++..++++.|.+
T Consensus 174 ~n~l~~~~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 174 SNRLTHVDLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp SSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred CCcCCccccccccccceeecccccc
Confidence 9999865444555555555555543
No 91
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=2.5e-09 Score=97.96 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=74.2
Q ss_pred EEEEEccCCCCcccCcchhccCC-CCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|++.. +|. +..+. +|+.|+|++|.+++. ..++.+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 21 L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 7889999999884 444 55554 899999999999865 578889999999999999985444445889999999999
Q ss_pred CCcCCccCCc--cccccc-ccccccccc
Q 009236 501 GNTLSGRVPA--ALGGRL-LHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~--~l~~l~-~~~l~~~~~ 525 (539)
+|+++ .+|. .+.+++ +..+.+.++
T Consensus 97 ~N~i~-~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred CCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence 99986 6676 565554 233444443
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.80 E-value=5e-09 Score=113.82 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=53.1
Q ss_pred EEEEEccCCCCcc--cCcchhccCCCCCeEEcccCccCccCccc-ccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 498 (539)
++.|+|++|.+++ .+|..+.++++|+.|+|++|.+.+.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+
T Consensus 379 L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~ 456 (562)
T 3a79_B 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLD 456 (562)
T ss_dssp CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEE
T ss_pred CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEE
Confidence 5556666666554 23344556666666666666666544432 55556666666666666655554433 5677777
Q ss_pred ccCCcCCccCCcccccc
Q 009236 499 LNGNTLSGRVPAALGGR 515 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l 515 (539)
|++|+++ .+|..+.++
T Consensus 457 L~~N~l~-~ip~~~~~l 472 (562)
T 3a79_B 457 LHNNRIM-SIPKDVTHL 472 (562)
T ss_dssp CCSSCCC-CCCTTTTSS
T ss_pred CCCCcCc-ccChhhcCC
Confidence 7777776 666655544
No 93
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.80 E-value=8.2e-09 Score=114.61 Aligned_cols=93 Identities=23% Similarity=0.230 Sum_probs=81.6
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+..|+++++|++|+|++|.+.+..|..+++|++|+.|+|++|.+++..|..++++++|++|+|+
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 37899999999996555679999999999999999997777889999999999999999998888889999999999999
Q ss_pred CCcCCccCCcccc
Q 009236 501 GNTLSGRVPAALG 513 (539)
Q Consensus 501 ~N~l~g~iP~~l~ 513 (539)
+|.+++..|..++
T Consensus 154 ~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 154 NNKIQALKSEELD 166 (680)
T ss_dssp SSCCCCBCHHHHG
T ss_pred CCcccccCHHHhh
Confidence 9999977666543
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.80 E-value=7.4e-09 Score=110.65 Aligned_cols=92 Identities=21% Similarity=0.136 Sum_probs=67.8
Q ss_pred EEEEEEccCCCCcccCcchhc-cCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+++..|..+. .|++|+.|+|++|.+++. | .+..+++|+.|+|++|.+++. |..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISL 221 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEe
Confidence 477888888888877777765 678888888888888755 2 234578888888888888854 444778888888888
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|.+++ +|..++.++
T Consensus 222 s~N~l~~-lp~~l~~l~ 237 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQ 237 (487)
T ss_dssp TTSCCCE-ECTTCCCCT
T ss_pred cCCcCcc-cchhhccCC
Confidence 8888884 676665543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=7e-09 Score=103.88 Aligned_cols=107 Identities=18% Similarity=0.069 Sum_probs=81.9
Q ss_pred EEEEEEccCCCCcccCc----chhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCcc--Cc--hhhcCCC
Q 009236 421 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT 492 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--iP--~~l~~l~ 492 (539)
.++.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+..|..++.+++|+.|+|++|++.+. ++ ..++.++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 47789999999998665 3456799999999999999988888999999999999999998763 33 2346889
Q ss_pred CCCEEeccCCcCCccCCc---cc----cccccccccccccccc
Q 009236 493 ALRRLNLNGNTLSGRVPA---AL----GGRLLHRASFKSMWYT 528 (539)
Q Consensus 493 ~L~~L~L~~N~l~g~iP~---~l----~~l~~~~l~~~~~~~~ 528 (539)
+|+.|+|++|+++ .+|. .+ .+|..++++.|.+...
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 9999999999997 3333 22 4555566666665443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=3.8e-09 Score=114.79 Aligned_cols=89 Identities=24% Similarity=0.298 Sum_probs=40.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|+ .+| ..+++|+.|+|++|.+++ +|. +.. +|+.|+|++|++++ +|. .+++|+.|+|++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 334444444444 233 234445555555555543 444 332 45555555555553 444 345555555555
Q ss_pred CcCCccCCcccccccccccccc
Q 009236 502 NTLSGRVPAALGGRLLHRASFK 523 (539)
Q Consensus 502 N~l~g~iP~~l~~l~~~~l~~~ 523 (539)
|+|++ +|..+.+|..+.++.|
T Consensus 150 N~l~~-lp~~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 150 NQLTM-LPELPTSLEVLSVRNN 170 (571)
T ss_dssp SCCSC-CCCCCTTCCEEECCSS
T ss_pred CccCc-CCCcCCCcCEEECCCC
Confidence 55553 4443333333334333
No 97
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.79 E-value=1.2e-08 Score=105.40 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=67.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+....+..+.++++|+.|+|++|.+.+..|..++.+++|+.|+|++|++++. + +..+++|+.|+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVS 194 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecc
Confidence 488999999999854444568999999999999999988888899999999999999999854 2 4556777777777
Q ss_pred CCcCCc
Q 009236 501 GNTLSG 506 (539)
Q Consensus 501 ~N~l~g 506 (539)
+|.+++
T Consensus 195 ~n~l~~ 200 (390)
T 3o6n_A 195 YNLLST 200 (390)
T ss_dssp SSCCSE
T ss_pred cccccc
Confidence 776664
No 98
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.79 E-value=9.5e-09 Score=111.31 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=72.7
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCc-cCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..++.|++|+.|+|++|.+++ .+|..++++++|++|++
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l 156 (570)
T 2z63_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (570)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeC
Confidence 37778888888877777778888888888888888775555467788888888888888876 46788888888888888
Q ss_pred cCCcCCccCCccccccc
Q 009236 500 NGNTLSGRVPAALGGRL 516 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l~ 516 (539)
++|++++..|..++++.
T Consensus 157 ~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 157 SSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTSCCCEECGGGGHHHH
T ss_pred cCCccceecHHHccchh
Confidence 88888766666665543
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.77 E-value=7.7e-09 Score=111.68 Aligned_cols=94 Identities=20% Similarity=0.278 Sum_probs=57.6
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCc-cCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEec
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNL 499 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L 499 (539)
++.|+|++|.+.+..|..+++|++|++|+|++|.+++ .+|..++.+++|+.|+|++|.+.+.+| ..+.++++|+.|+|
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 5566666666665555556666666666666666654 345556666666666666666444444 35666666666666
Q ss_pred cCCcCCccCCcccccc
Q 009236 500 NGNTLSGRVPAALGGR 515 (539)
Q Consensus 500 ~~N~l~g~iP~~l~~l 515 (539)
++|.+++.+|..++++
T Consensus 156 ~~n~l~~~~~~~l~~l 171 (549)
T 2z81_A 156 KALSLRNYQSQSLKSI 171 (549)
T ss_dssp EETTCCEECTTTTTTC
T ss_pred cCCcccccChhhhhcc
Confidence 6666666666665544
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.76 E-value=3.2e-09 Score=106.40 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=80.4
Q ss_pred EEEEEEccCCCCccc--Cc--chhccCCCCCeEEcccCccCccCcc----cccCCCCCcEEeccCCcCCccCchhhcCC-
Q 009236 421 VIDGLGLDNQGLRGF--LP--NGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL- 491 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~--~p--~~l~~L~~L~~L~Ls~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l- 491 (539)
.++.|+|++|.+.+. ++ ..+..+++|+.|+|++|.++ .++. .++.+++|+.|+|++|++++.+|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 488899999998753 32 23468899999999999997 3333 25788999999999999998888888777
Q ss_pred --CCCCEEeccCCcCCccCCcccc-ccccccccccccc
Q 009236 492 --TALRRLNLNGNTLSGRVPAALG-GRLLHRASFKSMW 526 (539)
Q Consensus 492 --~~L~~L~L~~N~l~g~iP~~l~-~l~~~~l~~~~~~ 526 (539)
++|+.|+|++|+++ .+|..+. +|..++++.|++.
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLN 285 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCC
Confidence 69999999999999 7887664 4555556655554
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.76 E-value=1.5e-08 Score=115.64 Aligned_cols=94 Identities=21% Similarity=0.254 Sum_probs=73.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCccc--ccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSS--LGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~ 498 (539)
|+.|+|++|.+.+..|..|.+|++|+.|+|++|.+++.+|.. +++|++|+.|+|++|.+++..| ..+++|++|+.|+
T Consensus 75 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 75 LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp CCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 677888888888877888888888888888888888766655 7888888888888888876654 5678888888888
Q ss_pred ccCCcCCccCCcccccc
Q 009236 499 LNGNTLSGRVPAALGGR 515 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l 515 (539)
|++|.+++..|..++.+
T Consensus 155 Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPL 171 (844)
T ss_dssp EESSCCCCCCSGGGHHH
T ss_pred CCCCcCCeeCHHHcccc
Confidence 88888887777766543
No 102
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.75 E-value=2.8e-09 Score=106.92 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=84.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCcc--Ccccc--cCCCCCcEEeccCCcCCc--cCc-hhhcCCCC
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA--IPSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA 493 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~--ip~~l--~~l~~L~~L~Ls~N~l~g--~iP-~~l~~l~~ 493 (539)
.++.|+|++|.+.+..|..++++++|+.|+|++|.+.|. +|..+ +.+++|+.|+|++|++++ .++ ..+.++++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 488999999999998889999999999999999999876 34455 889999999999999983 333 34468899
Q ss_pred CCEEeccCCcCCccCCc-cc---cccccccccccccc
Q 009236 494 LRRLNLNGNTLSGRVPA-AL---GGRLLHRASFKSMW 526 (539)
Q Consensus 494 L~~L~L~~N~l~g~iP~-~l---~~l~~~~l~~~~~~ 526 (539)
|+.|+|++|++++.+|. .+ .+|..++++.|.+.
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 99999999999987753 33 34445555555543
No 103
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.74 E-value=9.5e-09 Score=98.72 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=69.2
Q ss_pred EEEEEEccC-CCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCc---EEeccCC-cCCccCchhhcCCCCCC
Q 009236 421 VIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE---VLDLSYN-FFNGSIPESLGQLTALR 495 (539)
Q Consensus 421 ~l~~L~L~~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~---~L~Ls~N-~l~g~iP~~l~~l~~L~ 495 (539)
.++.|+|++ |.+++..+..+.++++|+.|+|++|.+++ +|. +..+++|+ .|+|++| ++++..+..+.++++|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 377888887 88887666778888888888888888885 665 77777777 8888888 88765556688888888
Q ss_pred -EEeccCCcCCccCCccc
Q 009236 496 -RLNLNGNTLSGRVPAAL 512 (539)
Q Consensus 496 -~L~L~~N~l~g~iP~~l 512 (539)
.|+|++|+++ .+|...
T Consensus 159 ~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp EEEECCSCCCC-EECTTT
T ss_pred eEEEcCCCCCc-ccCHhh
Confidence 8888888888 666543
No 104
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.70 E-value=2.4e-08 Score=101.78 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=62.8
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcc--cccCCCCCcEEeccCCc-CCccCchhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNF-FNGSIPESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~ 498 (539)
++.|+|++|.+++..+..+.++++|++|+|++|.+. .+|. .+..+++|+.|+|++|+ +.+..|..+.++++|+.|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence 667777777777544444677777777777777776 3443 56677777777777773 5544456677777777777
Q ss_pred ccCCcCCccCCccccccc
Q 009236 499 LNGNTLSGRVPAALGGRL 516 (539)
Q Consensus 499 L~~N~l~g~iP~~l~~l~ 516 (539)
|++|.+++..|..+.++.
T Consensus 181 l~~n~l~~~~~~~l~~l~ 198 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQ 198 (353)
T ss_dssp EEETTCCEECTTTTTTCS
T ss_pred CCCCCcCccCHHHHhccc
Confidence 777777766676665553
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.68 E-value=1.3e-08 Score=108.73 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC-------------------cCCc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-------------------FFNG 482 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-------------------~l~g 482 (539)
|+.|+|++|.+.+..|..|+.|++|+.|+|++|.+++..| ++.+++|+.|+|++| .+++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~ 113 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCC
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCC
Confidence 4455555555555444555555555555555555554433 445555555555554 4443
Q ss_pred cCchhhcCCCCCCEEeccCCcCCccCCccccccc---ccccccccc
Q 009236 483 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRL---LHRASFKSM 525 (539)
Q Consensus 483 ~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l~~l~---~~~l~~~~~ 525 (539)
..+ ..+++|+.|+|++|.+++..|..++++. .++++.|.+
T Consensus 114 ~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 114 VSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp EEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred CCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence 333 2457788888999988887777776554 334444443
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.65 E-value=3.9e-08 Score=98.72 Aligned_cols=90 Identities=21% Similarity=0.175 Sum_probs=61.0
Q ss_pred EEEEEccCCCCcccCcchhc-cCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|.+.+..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|+
T Consensus 146 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (317)
T ss_dssp EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred CCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECc
Confidence 77777777777776666553 677777777777777744 3 23347777777777777774 44457777777777777
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|+++ .+|..+..+
T Consensus 223 ~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 223 NNKLV-LIEKALRFS 236 (317)
T ss_dssp TSCCC-EECTTCCCC
T ss_pred CCccc-chhhHhhcC
Confidence 77777 466655444
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.62 E-value=1.9e-08 Score=101.11 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=50.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..+ +..+++|+.|+|++|.+++. ..+++|+.|++++|++++..+. .+++|+.|+|++
T Consensus 60 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~ 129 (317)
T 3o53_A 60 LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLAN 129 (317)
T ss_dssp CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCS
T ss_pred CCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCC
Confidence 5555666665554433 55555666666666655522 1235566666666666543332 357788888888
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|++++..|..++.+.
T Consensus 130 N~l~~~~~~~~~~l~ 144 (317)
T 3o53_A 130 NKITMLRDLDEGCRS 144 (317)
T ss_dssp SCCCSGGGBCTGGGS
T ss_pred CCCCCccchhhhccC
Confidence 888876666665543
No 108
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.59 E-value=7e-08 Score=97.79 Aligned_cols=85 Identities=26% Similarity=0.362 Sum_probs=72.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++..|..+..+++|+.|+|+
T Consensus 244 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 244 QLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 377899999988864 5688899999999999998854 368889999999999999998888889999999999999
Q ss_pred CCcCCccCC
Q 009236 501 GNTLSGRVP 509 (539)
Q Consensus 501 ~N~l~g~iP 509 (539)
+|.+++..|
T Consensus 320 ~n~l~~~~~ 328 (347)
T 4fmz_A 320 QNHITDIRP 328 (347)
T ss_dssp SSSCCCCGG
T ss_pred CCccccccC
Confidence 999986655
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.57 E-value=1.5e-07 Score=99.59 Aligned_cols=86 Identities=23% Similarity=0.223 Sum_probs=62.5
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+++ +| ++.+++|+.|+|++|.+++. .++.+++|+.|+|++|++++ +| ++.+++|+.|+|++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 6677788887776 34 77777788888888877754 37777788888888888876 56 67777788888888
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|++++..+..+.++.
T Consensus 243 N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 243 NPLTELDVSTLSKLT 257 (457)
T ss_dssp SCCSCCCCTTCTTCC
T ss_pred CcCCCcCHHHCCCCC
Confidence 887765555555554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.56 E-value=1.7e-07 Score=92.98 Aligned_cols=87 Identities=32% Similarity=0.533 Sum_probs=62.0
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|+
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 367777887777763 4577777888888888877754 467777888888888888875443 7777888888888
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|.+++ +|. +.++
T Consensus 187 ~N~i~~-l~~-l~~l 199 (291)
T 1h6t_A 187 KNHISD-LRA-LAGL 199 (291)
T ss_dssp SSCCCB-CGG-GTTC
T ss_pred CCcCCC-Chh-hccC
Confidence 888773 443 4443
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=1e-09 Score=102.58 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=73.9
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+ +| .+.++++|+.|+|++|.+. .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 37789999999987 66 8889999999999999998 788888888899999999999985 56 68888999999999
Q ss_pred CCcCCccCC-ccccccc
Q 009236 501 GNTLSGRVP-AALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP-~~l~~l~ 516 (539)
+|++++..+ ..+.+++
T Consensus 124 ~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALD 140 (198)
T ss_dssp EEECCCHHHHHHHTTTT
T ss_pred CCcCCchhHHHHHhcCC
Confidence 999884221 2454443
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.55 E-value=2e-07 Score=92.42 Aligned_cols=81 Identities=30% Similarity=0.384 Sum_probs=51.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+ .+.+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++
T Consensus 92 L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 92 LGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence 5566666666654 23366666666666666666642 3566666777777777766643 4566677777777777
Q ss_pred CcCCccC
Q 009236 502 NTLSGRV 508 (539)
Q Consensus 502 N~l~g~i 508 (539)
|++++..
T Consensus 166 N~l~~~~ 172 (291)
T 1h6t_A 166 NQISDIV 172 (291)
T ss_dssp SCCCCCG
T ss_pred Cccccch
Confidence 7776443
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.54 E-value=1.5e-07 Score=103.17 Aligned_cols=79 Identities=27% Similarity=0.405 Sum_probs=44.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.|+|++|.|++. +.++.|++|+.|+|++|.+.+..| +..|++|+.|+|++|.|++ +| .+..|++|+.|+|++
T Consensus 133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS 206 (605)
T ss_dssp CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCS
T ss_pred cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccC
Confidence 55555666555543 445555566666666665554444 5555566666666665553 22 355555666666666
Q ss_pred CcCCc
Q 009236 502 NTLSG 506 (539)
Q Consensus 502 N~l~g 506 (539)
|.+++
T Consensus 207 N~l~~ 211 (605)
T 1m9s_A 207 QECLN 211 (605)
T ss_dssp EEEEC
T ss_pred CcCcC
Confidence 65553
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.53 E-value=1.8e-07 Score=102.40 Aligned_cols=88 Identities=32% Similarity=0.519 Sum_probs=70.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.|+.|+|++|.|.+. +.+..|++|+.|+|++|.+++. ..+..|++|+.|+|++|.+++..| +..|++|+.|+|+
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 477889999988863 4688889999999999998865 578889999999999999987655 8889999999999
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|+|++ +| .+..++
T Consensus 184 ~N~i~~-l~-~l~~l~ 197 (605)
T 1m9s_A 184 KNHISD-LR-ALAGLK 197 (605)
T ss_dssp SSCCCB-CG-GGTTCT
T ss_pred CCCCCC-Ch-HHccCC
Confidence 999885 44 455443
No 115
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.53 E-value=1.8e-07 Score=93.53 Aligned_cols=87 Identities=23% Similarity=0.371 Sum_probs=69.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++ ++. +..+++|+.|+|++|++++ +|. +..+++|+.|+|+
T Consensus 130 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLK 203 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECT
T ss_pred CCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEcc
Confidence 47889999999886533 8889999999999999985 443 8889999999999999985 443 7889999999999
Q ss_pred CCcCCccCCcccccc
Q 009236 501 GNTLSGRVPAALGGR 515 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l 515 (539)
+|++++..| +..+
T Consensus 204 ~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 204 NNQISDVSP--LANT 216 (308)
T ss_dssp TSCCCBCGG--GTTC
T ss_pred CCccCcccc--ccCC
Confidence 999985543 4444
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.52 E-value=2.9e-07 Score=89.97 Aligned_cols=80 Identities=26% Similarity=0.497 Sum_probs=41.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcc--------------------cccCCCCCcEEeccCCcCC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS--------------------SLGTIASLEVLDLSYNFFN 481 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~--------------------~l~~l~~L~~L~Ls~N~l~ 481 (539)
++.|+|++|.+++..+ +.+|++|+.|+|++|.+++ +|. .+..+++|+.|+|++|+++
T Consensus 65 L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 65 LKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccccCcccEEEccCCccCCChhhcCcccccEEECCCCcCC
Confidence 5556666666654322 5556666666666665553 222 3444555555555555554
Q ss_pred ccCchhhcCCCCCCEEeccCCcCCc
Q 009236 482 GSIPESLGQLTALRRLNLNGNTLSG 506 (539)
Q Consensus 482 g~iP~~l~~l~~L~~L~L~~N~l~g 506 (539)
+ +| .+..+++|+.|+|++|++++
T Consensus 142 ~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 142 S-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp B-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred C-Ch-HHccCCCCCEEECCCCcCcc
Confidence 3 22 34455555555555555543
No 117
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.52 E-value=2.8e-07 Score=92.14 Aligned_cols=80 Identities=25% Similarity=0.424 Sum_probs=55.9
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+. +.+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|.+++. |. +..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 86 KITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIG 159 (308)
T ss_dssp SCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECC
T ss_pred CCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEcc
Confidence 366777777777653 357777777777777777774 33 277777777777777777743 33 6777778888888
Q ss_pred CCcCCc
Q 009236 501 GNTLSG 506 (539)
Q Consensus 501 ~N~l~g 506 (539)
+|.+++
T Consensus 160 ~n~l~~ 165 (308)
T 1h6u_A 160 NAQVSD 165 (308)
T ss_dssp SSCCCC
T ss_pred CCcCCC
Confidence 777774
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.52 E-value=1.6e-07 Score=101.97 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=44.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|++ +|. +.+ +|+.|+|++|.+++ +|. .+++|+.|+|++|++++ +|. .+++|+.|+|++
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRN 169 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCC
Confidence 5556666666665 554 443 56666666666664 454 45566666666666664 454 355666666666
Q ss_pred CcCCccCCc
Q 009236 502 NTLSGRVPA 510 (539)
Q Consensus 502 N~l~g~iP~ 510 (539)
|+|++ +|.
T Consensus 170 N~L~~-lp~ 177 (571)
T 3cvr_A 170 NQLTF-LPE 177 (571)
T ss_dssp SCCSC-CCC
T ss_pred CCCCC-cch
Confidence 66654 554
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.51 E-value=5.9e-08 Score=98.88 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=87.0
Q ss_pred CCCcccccccCCCCc-----eeEEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcc-cccCCCCCcE-Eecc
Q 009236 404 HPWSGADCQFDRTSH-----KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS 476 (539)
Q Consensus 404 ~~w~gv~C~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~-L~Ls 476 (539)
|.|..|.|+...... ...++.|+|++|+|+..-+..|.+|++|+.|+|++|.+.+.+|. .|.+|++|+. +.++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 578889997543211 13478999999999965556799999999999999999877774 5788888765 6777
Q ss_pred CCcCCccCchhhcCCCCCCEEeccCCcCCccCCccc
Q 009236 477 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 512 (539)
Q Consensus 477 ~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP~~l 512 (539)
.|+++...|..+..+++|+.|++++|++.+..+..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhh
Confidence 899997778889999999999999999985544433
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.51 E-value=1.8e-07 Score=98.88 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=38.0
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+++ +| .++++++|+.|++++|.+++ +|..+ .+|+.|+|++|++++ +| .++++++|+.|++++
T Consensus 133 L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 133 LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 4455555555554 44 35555555555555555553 34322 245555555555553 34 345555555555555
Q ss_pred CcCC
Q 009236 502 NTLS 505 (539)
Q Consensus 502 N~l~ 505 (539)
|+++
T Consensus 205 N~l~ 208 (454)
T 1jl5_A 205 NSLK 208 (454)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 5544
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=1.1e-07 Score=100.68 Aligned_cols=90 Identities=26% Similarity=0.411 Sum_probs=52.8
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCc--cCchhhcCC-------
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG--SIPESLGQL------- 491 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~iP~~l~~l------- 491 (539)
.++.|+|++|.+++ +|.. +++|+.|+|++|.++ .+|. .+++|+.|+|++|++++ .+|..++.+
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~ 389 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA 389 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence 37789999999987 6654 588999999999998 5776 57899999999999998 788888877
Q ss_pred ------CCCCEEeccCCcCCc--cCCccccccccc
Q 009236 492 ------TALRRLNLNGNTLSG--RVPAALGGRLLH 518 (539)
Q Consensus 492 ------~~L~~L~L~~N~l~g--~iP~~l~~l~~~ 518 (539)
++|+.|+|++|+++| .+|.++..+...
T Consensus 390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~ 424 (454)
T 1jl5_A 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMN 424 (454)
T ss_dssp -----------------------------------
T ss_pred ccccccCcCCEEECCCCcCCccccchhhHhheeCc
Confidence 789999999999987 888887776543
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.43 E-value=1.6e-07 Score=99.37 Aligned_cols=83 Identities=22% Similarity=0.133 Sum_probs=46.6
Q ss_pred EEEEEccCCCCcccCcchhccCC-------CCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchh-------
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLR-------HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES------- 487 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~-------~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~------- 487 (539)
++.|+|++|.+++..+..+.+|+ +|+.|++++|.+.|.+| ++.|++|+.|+|++|.+.|.+|..
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe
Confidence 45556666666554333333333 34445555555555554 345666666666666666665532
Q ss_pred -hcCCCCCCEEeccCCcCCc
Q 009236 488 -LGQLTALRRLNLNGNTLSG 506 (539)
Q Consensus 488 -l~~l~~L~~L~L~~N~l~g 506 (539)
+.++++|+.|+|++|+++|
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTE 332 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSC
T ss_pred chhhcccCCEEECCCCcccc
Confidence 3445566777777777775
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.43 E-value=2.1e-08 Score=101.04 Aligned_cols=81 Identities=25% Similarity=0.263 Sum_probs=34.9
Q ss_pred EEEEEccCCCCccc-CcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCC-cCCcc-CchhhcCCCCCCEEe
Q 009236 422 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNGS-IPESLGQLTALRRLN 498 (539)
Q Consensus 422 l~~L~L~~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~-iP~~l~~l~~L~~L~ 498 (539)
++.|+|++|.+.+. ++..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++| .+++. +|..+.++++|+.|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 34444444444433 3444444444444444444444444444444444444444444 33331 333344444444444
Q ss_pred ccCC
Q 009236 499 LNGN 502 (539)
Q Consensus 499 L~~N 502 (539)
|++|
T Consensus 175 l~~~ 178 (336)
T 2ast_B 175 LSWC 178 (336)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4444
No 124
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.43 E-value=3.1e-07 Score=97.20 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=41.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|++++
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLND 384 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccC
Confidence 4455555555554433 44555555555555555543 245555555555555555554444 45555555555555
Q ss_pred CcCCc
Q 009236 502 NTLSG 506 (539)
Q Consensus 502 N~l~g 506 (539)
|.+++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 55553
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=3.2e-09 Score=99.11 Aligned_cols=87 Identities=23% Similarity=0.229 Sum_probs=71.4
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L 499 (539)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++..+ ..+..+++|+.|+|
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 4778999999888 678888888899999999999986 55 68888899999999999884222 47888999999999
Q ss_pred cCCcCCccCCc
Q 009236 500 NGNTLSGRVPA 510 (539)
Q Consensus 500 ~~N~l~g~iP~ 510 (539)
++|.+++.+|.
T Consensus 148 ~~N~l~~~~~~ 158 (198)
T 1ds9_A 148 AGNPLYNDYKE 158 (198)
T ss_dssp CSCHHHHHHHT
T ss_pred cCCcccccccc
Confidence 99998877665
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.42 E-value=4.3e-08 Score=101.11 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=44.3
Q ss_pred EEEEEccCCCCc--c---cCcchhccCCCCCeEEcccCccC----ccCcccccCCCCCcEEeccCCcCCcc----Cchhh
Q 009236 422 IDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (539)
Q Consensus 422 l~~L~L~~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l 488 (539)
++.|+|++|++. | .++..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 445555555554 2 22334555555555555555554 44555555555555555555555543 34444
Q ss_pred c--CCCCCCEEeccCCcCCc
Q 009236 489 G--QLTALRRLNLNGNTLSG 506 (539)
Q Consensus 489 ~--~l~~L~~L~L~~N~l~g 506 (539)
. .+++|+.|+|++|.+++
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBH
T ss_pred hhccCCCeEEEECcCCcCCH
Confidence 2 25555555555555554
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.42 E-value=7.2e-08 Score=98.70 Aligned_cols=86 Identities=27% Similarity=0.384 Sum_probs=65.2
Q ss_pred EEEEEccCCCCcccCcchhccC-----CCCCeEEcccCccCccCccccc----CC-CCCcEEeccCCcCCccCchhhc--
Q 009236 422 IDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLG----TI-ASLEVLDLSYNFFNGSIPESLG-- 489 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~ip~~l~----~l-~~L~~L~Ls~N~l~g~iP~~l~-- 489 (539)
++.|+|++|.+.+..+..+..+ ++|+.|+|++|.+++..+..+. .+ ++|+.|+|++|++++..+..+.
T Consensus 53 L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA 132 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred eeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH
Confidence 7788888888888777777665 8888888888888877666443 34 7888888888888876665543
Q ss_pred --C-CCCCCEEeccCCcCCcc
Q 009236 490 --Q-LTALRRLNLNGNTLSGR 507 (539)
Q Consensus 490 --~-l~~L~~L~L~~N~l~g~ 507 (539)
. .++|+.|+|++|.+++.
T Consensus 133 l~~~~~~L~~L~Ls~N~l~~~ 153 (362)
T 3goz_A 133 FSNLPASITSLNLRGNDLGIK 153 (362)
T ss_dssp HTTSCTTCCEEECTTSCGGGS
T ss_pred HHhCCCceeEEEccCCcCCHH
Confidence 3 35888888888888753
No 128
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.39 E-value=4.8e-07 Score=91.54 Aligned_cols=99 Identities=23% Similarity=0.378 Sum_probs=81.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+++..+ +..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECc
Confidence 38899999999986544 8999999999999999985 3 478999999999999999995 44 58899999999999
Q ss_pred CCcCCccCCccccccc---ccccccccc
Q 009236 501 GNTLSGRVPAALGGRL---LHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~---~~~l~~~~~ 525 (539)
+|.+++..|..+++++ .++++.|++
T Consensus 296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp SSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CCcCCCcChhHhhccccCCEEEccCCcc
Confidence 9999988887776654 334444443
No 129
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.39 E-value=5.6e-07 Score=95.23 Aligned_cols=88 Identities=24% Similarity=0.399 Sum_probs=66.9
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.+.+..+ +..+++|+.|+|++|.+.+..| ++.+++|+.|+|++|++++..| +..+++|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 37788888888876433 7788888888888888886544 7788888888888888887655 6788888888888
Q ss_pred CCcCCccCCccccccc
Q 009236 501 GNTLSGRVPAALGGRL 516 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~ 516 (539)
+|.+++. ..+.+++
T Consensus 340 ~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 340 NNKVSDV--SSLANLT 353 (466)
T ss_dssp SSCCCCC--GGGTTCT
T ss_pred CCccCCc--hhhccCC
Confidence 8888854 3454443
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.37 E-value=7.4e-08 Score=97.03 Aligned_cols=102 Identities=20% Similarity=0.135 Sum_probs=85.4
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCcc-CcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
.++.|++++|.+.+..+. +.++++|+.|+|++|.+++. +|..+..+++|+.|+|++|.+++..|..++.+++|+.|+|
T Consensus 71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 478899999999987665 66899999999999999876 8889999999999999999999999999999999999999
Q ss_pred cCC-cCCcc-CCcccccc---cccccccc
Q 009236 500 NGN-TLSGR-VPAALGGR---LLHRASFK 523 (539)
Q Consensus 500 ~~N-~l~g~-iP~~l~~l---~~~~l~~~ 523 (539)
++| .+++. +|..+.++ ..++++.+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 999 68763 66545444 33444444
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.36 E-value=8e-08 Score=99.09 Aligned_cols=106 Identities=27% Similarity=0.360 Sum_probs=85.3
Q ss_pred EEEEEEccCCCCc-ccCc---chhccCCCCCeEEcccCccC--c---cCcccccCCCCCcEEeccCCcCC----ccCchh
Q 009236 421 VIDGLGLDNQGLR-GFLP---NGISKLRHLQSINLSGNSIR--G---AIPSSLGTIASLEVLDLSYNFFN----GSIPES 487 (539)
Q Consensus 421 ~l~~L~L~~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~ip~~l~~l~~L~~L~Ls~N~l~----g~iP~~ 487 (539)
.++.|+|++|.+. +.++ ..+..+++|+.|+|++|.+. | .+|..+..+++|+.|+|++|.++ +.+|..
T Consensus 160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 4789999999998 5555 57889999999999999998 3 45558889999999999999996 688999
Q ss_pred hcCCCCCCEEeccCCcCCcc----CCccc-----cccccccccccccc
Q 009236 488 LGQLTALRRLNLNGNTLSGR----VPAAL-----GGRLLHRASFKSMW 526 (539)
Q Consensus 488 l~~l~~L~~L~L~~N~l~g~----iP~~l-----~~l~~~~l~~~~~~ 526 (539)
+..+++|+.|+|++|.+++. +|..+ .+|..++++.|.+.
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 99999999999999999865 55554 33444555555543
No 132
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=1.1e-06 Score=85.82 Aligned_cols=77 Identities=27% Similarity=0.432 Sum_probs=59.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|+++. ++ .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++ +|... . ++|+.|+|++
T Consensus 43 L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~ 115 (263)
T 1xeu_A 43 VQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDN 115 (263)
T ss_dssp CSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCS
T ss_pred CcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccC
Confidence 7789999999984 55 79999999999999999996544 9999999999999999885 44321 1 4455555555
Q ss_pred CcCC
Q 009236 502 NTLS 505 (539)
Q Consensus 502 N~l~ 505 (539)
|+++
T Consensus 116 N~l~ 119 (263)
T 1xeu_A 116 NELR 119 (263)
T ss_dssp SCCS
T ss_pred CccC
Confidence 5544
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.34 E-value=3e-07 Score=100.93 Aligned_cols=86 Identities=30% Similarity=0.396 Sum_probs=76.5
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.|+|++|.|++ +| ..+++|+.|+|++|.++ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 7889999999987 56 56789999999999999 6776 6789999999999999 8899999999999999999
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|.+++.+|..+.++.
T Consensus 294 N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 294 NPLSERTLQALREIT 308 (622)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhcc
Confidence 999999988877664
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.30 E-value=2.5e-07 Score=94.65 Aligned_cols=91 Identities=25% Similarity=0.325 Sum_probs=78.1
Q ss_pred EEEEEccCCCCcccCc----chhccCC-CCCeEEcccCccCccCcccccCC-----CCCcEEeccCCcCCccCchhhc--
Q 009236 422 IDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG-- 489 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~iP~~l~-- 489 (539)
++.|+|++|.+++..+ ..+.+++ +|+.|+|++|.+++..+..+..+ ++|+.|+|++|++++..+..+.
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 8899999999998777 7788898 89999999999998888777775 9999999999999988777554
Q ss_pred --CC-CCCCEEeccCCcCCccCCccc
Q 009236 490 --QL-TALRRLNLNGNTLSGRVPAAL 512 (539)
Q Consensus 490 --~l-~~L~~L~L~~N~l~g~iP~~l 512 (539)
.+ ++|+.|+|++|.+++..+..+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l 129 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEF 129 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHH
Confidence 44 899999999999986655544
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.20 E-value=2.9e-06 Score=93.12 Aligned_cols=92 Identities=24% Similarity=0.311 Sum_probs=60.2
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
.++.|+|++|.|+ .+|. .+++|+.|+|++|.++ .+|. .+++|+.|+|++|++++ +|. .+++|+.|+|+
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 3667777777776 3454 4677777777777776 4554 56777777777777773 454 45667777777
Q ss_pred CCcCCccCCcccccccccccccccc
Q 009236 501 GNTLSGRVPAALGGRLLHRASFKSM 525 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~~~l~~~~~ 525 (539)
+|+++ .+|..+.+|..++++.|.+
T Consensus 130 ~N~l~-~lp~~l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 130 GNQLT-SLPVLPPGLQELSVSDNQL 153 (622)
T ss_dssp SSCCS-CCCCCCTTCCEEECCSSCC
T ss_pred CCCCC-cCCCCCCCCCEEECcCCcC
Confidence 77776 4666665555555555544
No 136
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=5.9e-07 Score=87.72 Aligned_cols=67 Identities=28% Similarity=0.420 Sum_probs=46.1
Q ss_pred ccCCCCCeEEcccCccCc--cCcccccCCCCCcEEeccCCcCCccCchhhcCCC--CCCEEeccCCcCCccCC
Q 009236 441 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVP 509 (539)
Q Consensus 441 ~~L~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L~L~~N~l~g~iP 509 (539)
.+|++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 456777777777777776 4556666777777777777777753 2333333 77777777777777666
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.07 E-value=2.4e-06 Score=83.42 Aligned_cols=77 Identities=27% Similarity=0.304 Sum_probs=64.6
Q ss_pred EEEEEEccCCCCcc--cCcchhccCCCCCeEEcccCccCccCcccccCCC--CCcEEeccCCcCCccCch-------hhc
Q 009236 421 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG 489 (539)
Q Consensus 421 ~l~~L~L~~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l~g~iP~-------~l~ 489 (539)
.|+.|+|++|.|++ .+|..+..|++|+.|+|++|.+++. ..+..+. +|+.|+|++|.+.+.+|. .+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 48899999999998 5678889999999999999999965 3344444 999999999999988873 367
Q ss_pred CCCCCCEEec
Q 009236 490 QLTALRRLNL 499 (539)
Q Consensus 490 ~l~~L~~L~L 499 (539)
.+++|+.||=
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 8999998863
No 138
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.03 E-value=4.7e-06 Score=84.70 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=73.0
Q ss_pred EEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCch-hhcCCCCCCE-EeccC
Q 009236 424 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG 501 (539)
Q Consensus 424 ~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~-L~L~~ 501 (539)
.++-++++|+ .+|..+ .++|+.|+|++|.++..-+..|.+|++|+.|+|++|++.+.+|. .+.++++|+. +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4677888888 678766 46899999999999954446799999999999999999877775 5788988775 67778
Q ss_pred CcCCccCCccccccc
Q 009236 502 NTLSGRVPAALGGRL 516 (539)
Q Consensus 502 N~l~g~iP~~l~~l~ 516 (539)
|++++..|..+.++.
T Consensus 90 N~l~~l~~~~f~~l~ 104 (350)
T 4ay9_X 90 NNLLYINPEAFQNLP 104 (350)
T ss_dssp TTCCEECTTSBCCCT
T ss_pred CcccccCchhhhhcc
Confidence 999976677777664
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.99 E-value=1.2e-06 Score=92.12 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=68.0
Q ss_pred EEEEEEccCCCCccc----CcchhccCCCCCeEEcccCccCccCcccccC-----CCCCcEEeccCCcCCc----cCchh
Q 009236 421 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNG----SIPES 487 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~iP~~ 487 (539)
.++.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+.. +++|+.|+|++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 477888888888765 5667778888888888888887665544432 6788888888888886 77888
Q ss_pred hcCCCCCCEEeccCCcCCcc
Q 009236 488 LGQLTALRRLNLNGNTLSGR 507 (539)
Q Consensus 488 l~~l~~L~~L~L~~N~l~g~ 507 (539)
+..+++|+.|+|++|++++.
T Consensus 394 l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHCCCCCEEECCSSSCCHH
T ss_pred HHhCCCccEEECCCCCCCHH
Confidence 88888888888888888754
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.97 E-value=3.7e-07 Score=96.04 Aligned_cols=93 Identities=24% Similarity=0.152 Sum_probs=56.8
Q ss_pred EEEEEccCCCCcccCcchhcc-----CCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCccCchhhcC--
Q 009236 422 IDGLGLDNQGLRGFLPNGISK-----LRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-- 490 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~-----L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~-- 490 (539)
++.|+|++|.+.+..+..+.. .++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..+..+..
T Consensus 286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 566666666665433333332 25667777777766654 4555666677777777777776554444432
Q ss_pred ---CCCCCEEeccCCcCCc----cCCccccc
Q 009236 491 ---LTALRRLNLNGNTLSG----RVPAALGG 514 (539)
Q Consensus 491 ---l~~L~~L~L~~N~l~g----~iP~~l~~ 514 (539)
+++|+.|+|++|.+++ .+|..+..
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 5677777777777775 56655543
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.67 E-value=1e-05 Score=83.16 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=26.6
Q ss_pred CCCCeEEcccCccCc----cCcccccCCCCCcEEeccCCcCCcc----CchhhcCCCCCCEEeccCCcCC
Q 009236 444 RHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGS----IPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 444 ~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
++|+.|+|++|.++. .++..+..+++|+.|+|++|.++.. ++..+..+++|+.|+|++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 444455555444432 1222334444455555555544321 1233334444455555544443
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.63 E-value=1.2e-05 Score=82.63 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=72.2
Q ss_pred EEEEEccCCCCcc----cCcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCcc----Cchhhc
Q 009236 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG 489 (539)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l~ 489 (539)
++.|+|++|.|+. .++..+..+++|+.|+|++|.+... ++..+..+++|+.|+|++|.++.. +...+.
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~ 236 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR 236 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH
Confidence 7889999999974 3556678899999999999999753 456677888999999999999853 445566
Q ss_pred CCCCCCEEeccCCcCCccCCccc
Q 009236 490 QLTALRRLNLNGNTLSGRVPAAL 512 (539)
Q Consensus 490 ~l~~L~~L~L~~N~l~g~iP~~l 512 (539)
..++|+.|+|++|.++..-...+
T Consensus 237 ~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 237 EHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HCSSCCEEECTTSSCCHHHHHHH
T ss_pred hCCCCCEEeccCCCCCHHHHHHH
Confidence 77999999999999975433333
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=0.00012 Score=73.39 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=77.7
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCc-EEeccCCcCCccCchhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~ 500 (539)
++.|+|++|+++..-+..|.+|.+|+.|+|++| +...-+..|..|.+|+ .++|++ .++..-+..|.+|++|+.++|+
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 778999999998666678999999999999998 7755567799999999 999998 6774455789999999999999
Q ss_pred CCcCCccCCcccccccc
Q 009236 501 GNTLSGRVPAALGGRLL 517 (539)
Q Consensus 501 ~N~l~g~iP~~l~~l~~ 517 (539)
.|+++..-+..|.++..
T Consensus 306 ~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 306 GDKITTLGDELFGNGVP 322 (329)
T ss_dssp SSCCCEECTTTTCTTCC
T ss_pred CCccCccchhhhcCCcc
Confidence 99998444456766643
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.42 E-value=2.8e-05 Score=84.33 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=67.1
Q ss_pred EEEEEccCCC--CcccCcchhcc-CCCCCeEEcccCccCc-cCcccccCCCCCcEEeccCCcCCcc-CchhhcCCCCCCE
Q 009236 422 IDGLGLDNQG--LRGFLPNGISK-LRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRR 496 (539)
Q Consensus 422 l~~L~L~~n~--l~g~~p~~l~~-L~~L~~L~Ls~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~ 496 (539)
++.|+|+.+. +++.....+.. +++|+.|+|++|.+++ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 517 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY 517 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence 7788887543 66555555554 8899999999999886 4566678899999999999998755 4455567899999
Q ss_pred EeccCCcCCcc
Q 009236 497 LNLNGNTLSGR 507 (539)
Q Consensus 497 L~L~~N~l~g~ 507 (539)
|+|++|+++..
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999998855
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=8e-05 Score=68.40 Aligned_cols=83 Identities=18% Similarity=0.208 Sum_probs=39.5
Q ss_pred EEEEEccCCCCcc----cCcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEec--cCCcCCcc----Cchh
Q 009236 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPES 487 (539)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~L--s~N~l~g~----iP~~ 487 (539)
++.|+|++|.|.. .+...+...+.|+.|+|++|.+... +...+...++|+.|+| ++|.+... +.+.
T Consensus 67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~ 146 (185)
T 1io0_A 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM 146 (185)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence 4455555555542 1233344445555555555555432 2334444555555555 45555432 2223
Q ss_pred hcCCCCCCEEeccCCcC
Q 009236 488 LGQLTALRRLNLNGNTL 504 (539)
Q Consensus 488 l~~l~~L~~L~L~~N~l 504 (539)
+...++|+.|+|++|.+
T Consensus 147 L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 147 LEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEeccCCCC
Confidence 33345555555555554
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.25 E-value=6.7e-05 Score=68.93 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=69.3
Q ss_pred EEEEEccCC-CCccc----CcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCcc----Cchhh
Q 009236 422 IDGLGLDNQ-GLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (539)
Q Consensus 422 l~~L~L~~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l 488 (539)
++.|+|++| .+... +...+...++|+.|+|++|.+... +...+...++|+.|+|++|.+... +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 778999999 88742 455677789999999999999743 445566678999999999999853 45667
Q ss_pred cCCCCCCEEec--cCCcCCcc
Q 009236 489 GQLTALRRLNL--NGNTLSGR 507 (539)
Q Consensus 489 ~~l~~L~~L~L--~~N~l~g~ 507 (539)
...++|+.|+| ++|.+...
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHH
T ss_pred HhCCCceEEEecCCCCCCCHH
Confidence 77889999999 88998743
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.08 E-value=0.00023 Score=64.65 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=65.3
Q ss_pred EEEEEEccCCCCcccCcchhccCCCCCeEEcccCc-cCccCcccccCC----CCCcEEeccCCc-CCccCchhhcCCCCC
Q 009236 421 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTAL 494 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~ip~~l~~l----~~L~~L~Ls~N~-l~g~iP~~l~~l~~L 494 (539)
.|+.|+|+++.++..--..+.++++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 59999999999875434567899999999999985 765444456664 479999999975 764333567889999
Q ss_pred CEEeccCCc
Q 009236 495 RRLNLNGNT 503 (539)
Q Consensus 495 ~~L~L~~N~ 503 (539)
+.|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999975
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.03 E-value=0.00016 Score=78.33 Aligned_cols=101 Identities=15% Similarity=-0.020 Sum_probs=55.2
Q ss_pred EEEEEccCCCCc----ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCC---ccCchhhcCCCCC
Q 009236 422 IDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN---GSIPESLGQLTAL 494 (539)
Q Consensus 422 l~~L~L~~n~l~----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~---g~iP~~l~~l~~L 494 (539)
++.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|..+..+++|+.|+++..... +..+..+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 556666666665 2334445556666666666666664 5556666666666666543222 2333455566666
Q ss_pred CEEeccCCcCCccCCccccc---cccccccccc
Q 009236 495 RRLNLNGNTLSGRVPAALGG---RLLHRASFKS 524 (539)
Q Consensus 495 ~~L~L~~N~l~g~iP~~l~~---l~~~~l~~~~ 524 (539)
+.|+++.+. .+.+|..+.. |..++++.+.
T Consensus 273 ~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 273 CRLGLSYMG-PNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CEEEETTCC-TTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccCccccc-hhHHHHHHhhcCCCcEEecCCCc
Confidence 766666543 2355555443 3344444444
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.85 E-value=0.00018 Score=77.93 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=64.2
Q ss_pred EEEEEEccCCCCcccCcchhcc-CCCCCeEEcccCccCccCcccc-cCCCCCcEEeccCCcCCccCch-hhcCCCCCCEE
Q 009236 421 VIDGLGLDNQGLRGFLPNGISK-LRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDLSYNFFNGSIPE-SLGQLTALRRL 497 (539)
Q Consensus 421 ~l~~L~L~~n~l~g~~p~~l~~-L~~L~~L~Ls~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L 497 (539)
.++.|+|++ .+++.....++. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 377888876 666655566665 8889999999999876655555 6688999999999998654443 34558899999
Q ss_pred eccCCcCCc
Q 009236 498 NLNGNTLSG 506 (539)
Q Consensus 498 ~L~~N~l~g 506 (539)
+|++|.++.
T Consensus 512 ~l~~~~~~~ 520 (594)
T 2p1m_B 512 WMSSCSVSF 520 (594)
T ss_dssp EEESSCCBH
T ss_pred eeeCCCCCH
Confidence 999998753
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.71 E-value=0.00027 Score=76.46 Aligned_cols=81 Identities=22% Similarity=0.218 Sum_probs=40.6
Q ss_pred EEEEEccCC-CCccc-CcchhccCCCCCeEEcccCccCccCccccc----CCCCCcEEeccCCc--CCcc-CchhhcCCC
Q 009236 422 IDGLGLDNQ-GLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLG----TIASLEVLDLSYNF--FNGS-IPESLGQLT 492 (539)
Q Consensus 422 l~~L~L~~n-~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~----~l~~L~~L~Ls~N~--l~g~-iP~~l~~l~ 492 (539)
++.|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+.|+|++|. +... ++..+.+++
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence 556666665 33322 333334566666666666665544333222 45566666666664 1111 111123456
Q ss_pred CCCEEeccCC
Q 009236 493 ALRRLNLNGN 502 (539)
Q Consensus 493 ~L~~L~L~~N 502 (539)
+|+.|+|++|
T Consensus 212 ~L~~L~L~~~ 221 (594)
T 2p1m_B 212 NLKSLKLNRA 221 (594)
T ss_dssp TCCEEECCTT
T ss_pred CCcEEecCCC
Confidence 6666666666
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.04 E-value=0.01 Score=50.92 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=41.1
Q ss_pred EEEccCCCCc-ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCC
Q 009236 424 GLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 481 (539)
Q Consensus 424 ~L~L~~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 481 (539)
.++.++++|+ ..+|..+. .+|+.|+|++|.|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4677788876 35564432 46888899999988555566788888888888888775
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.85 E-value=0.0087 Score=59.66 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=65.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCC-eEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEec
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQ-SINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 499 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~-~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 499 (539)
|+.|+|++| +...-+..|.+|.+|+ .|+|.. .+...-+..|..|++|+.++|+.|+++..-+..|.++++|+.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 788999997 7765567899999999 999998 777555688999999999999999999655668999999999864
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.73 E-value=0.0028 Score=64.53 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=18.5
Q ss_pred CCCCcEEeccCCcCCccCchhhc---CCCCCCEEeccCCcCC
Q 009236 467 IASLEVLDLSYNFFNGSIPESLG---QLTALRRLNLNGNTLS 505 (539)
Q Consensus 467 l~~L~~L~Ls~N~l~g~iP~~l~---~l~~L~~L~L~~N~l~ 505 (539)
+++|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 44555555555555433322222 3445555555555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.54 E-value=0.0025 Score=64.92 Aligned_cols=65 Identities=15% Similarity=0.307 Sum_probs=44.3
Q ss_pred cCCCCCeEEcccCccCccCccccc---CCCCCcEEeccCCcCCcc----CchhhcCCCCCCEEeccCCcCCc
Q 009236 442 KLRHLQSINLSGNSIRGAIPSSLG---TIASLEVLDLSYNFFNGS----IPESLGQLTALRRLNLNGNTLSG 506 (539)
Q Consensus 442 ~L~~L~~L~Ls~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~L~~N~l~g 506 (539)
.+++|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+.+. ++..+..+++|+.|+|+.|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 467788888888777654433332 467788888888887753 34444566788888888887763
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.32 E-value=0.025 Score=48.44 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred CeEEcccCccC-ccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCC
Q 009236 447 QSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 505 (539)
Q Consensus 447 ~~L~Ls~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~ 505 (539)
..++.+++.|+ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888886 46665432 46888888888888444456778888888888888764
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.97 E-value=0.038 Score=56.90 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=49.4
Q ss_pred EEEEEccCCCCc-----ccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCE
Q 009236 422 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (539)
Q Consensus 422 l~~L~L~~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 496 (539)
|+.|.|.++.+. ..-+..|.+|++|+.+.|. +.+.-.-...|..|.+|+.+.|..| ++..-+..|.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 556666665554 1223456677777777776 3355333456667777777777544 442334466667 7777
Q ss_pred EeccCCcCC
Q 009236 497 LNLNGNTLS 505 (539)
Q Consensus 497 L~L~~N~l~ 505 (539)
+.+.+|.+.
T Consensus 350 l~l~~n~~~ 358 (401)
T 4fdw_A 350 VKVEGTTPP 358 (401)
T ss_dssp EEECCSSCC
T ss_pred EEEcCCCCc
Confidence 777777665
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.24 E-value=0.065 Score=55.10 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=64.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccC-----ccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCE
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 496 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~ 496 (539)
++.+.| .+++...-...|.++++|+.+.|.+|.+. -.-+..|..|.+|+.++|. +.++-.-...|.+|++|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 455666 34455444567888888888888887765 2334567788888888888 4466333457778888888
Q ss_pred EeccCCcCCccCCcccccccccccccccc
Q 009236 497 LNLNGNTLSGRVPAALGGRLLHRASFKSM 525 (539)
Q Consensus 497 L~L~~N~l~g~iP~~l~~l~~~~l~~~~~ 525 (539)
+.|..| ++..-+..|.++.+..+.+..+
T Consensus 328 l~lp~~-l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 328 LTIPAN-VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp EEECTT-CCEECTTSSSSSCCCEEEECCS
T ss_pred EEECcc-ccEEcHHhCCCCCCCEEEEcCC
Confidence 888655 5423334555554444555444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=93.47 E-value=0.041 Score=49.70 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCCCeEEcccCccCccCcccccCCCCCcEEeccCCc-CCccCchhhcCC----CCCCEEeccCCc-CC
Q 009236 444 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LS 505 (539)
Q Consensus 444 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~L~~N~-l~ 505 (539)
-+|+.|||+++.++..--..+..|++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 469999999999886655678899999999999985 664333456665 379999999984 65
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.20 E-value=0.038 Score=50.85 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=25.6
Q ss_pred EEEEEccCCCCcc----cCcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccC
Q 009236 422 IDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSY 477 (539)
Q Consensus 422 l~~L~L~~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~ 477 (539)
|+.|+|++|.|.. .+...+..=+.|+.|+|++|.+... +-..+..-+.|+.|+|++
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 4555555555542 1223333445555555555555422 122233334455555554
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.81 E-value=0.14 Score=47.02 Aligned_cols=81 Identities=16% Similarity=0.284 Sum_probs=60.0
Q ss_pred EEEEEccCC-CCcc----cCcchhccCCCCCeEEcccCccCcc----CcccccCCCCCcEEeccCCcCCcc----Cchhh
Q 009236 422 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 488 (539)
Q Consensus 422 l~~L~L~~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~----iP~~l 488 (539)
++.|+|++| .|.. .+-..+..=+.|+.|+|++|.+... +-..+..-+.|+.|+|+.|.|... +-+.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 778999985 7652 2445667778999999999999743 334455568899999999999843 22345
Q ss_pred cCCCCCCEEeccCC
Q 009236 489 GQLTALRRLNLNGN 502 (539)
Q Consensus 489 ~~l~~L~~L~L~~N 502 (539)
..-+.|+.|+|++|
T Consensus 123 ~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 123 LVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTCCCSEEECCCC
T ss_pred hhCCceeEEECCCC
Confidence 55567999999875
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.64 E-value=0.82 Score=46.34 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=33.5
Q ss_pred chhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
..|.++.+|+.++|..+ ++-.-...|.+|.+|+.++|..| ++-.-...|.++.+|+.++|..
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 44556666666666533 43222345566666666666554 4422233566666666666554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=85.14 E-value=1.6 Score=44.13 Aligned_cols=79 Identities=15% Similarity=0.300 Sum_probs=52.5
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~ 500 (539)
|+.+.+. +.+...-...|.++.+|+.+.|..+ ++-.-...|..|.+|+.+.|..+ ++ .|. ..|.++++|+.+++.
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEES
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEEC
Confidence 4556664 3344333456778888888888754 44333456788888888888654 55 343 577888888888888
Q ss_pred CCcC
Q 009236 501 GNTL 504 (539)
Q Consensus 501 ~N~l 504 (539)
+|..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 7653
No 163
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=84.68 E-value=18 Score=30.91 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=55.2
Q ss_pred CCCceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCCCcc---ceEEEEEEEecCCeEEEEEe
Q 009236 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH 158 (539)
Q Consensus 82 g~~~~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~~~~---~~~~E~i~~~~~~~l~v~f~ 158 (539)
|..-.|++.+.+.|.|.|++.+.-+. ...+..+|++||..-.++. |..... .....+.+..+.+.=.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence 44557888888889999999987432 2356799999996433433 322211 11222233345665566665
Q ss_pred ec-CCCCCeEeeEEEEEcC
Q 009236 159 ST-GHGDPAILSLEILQVD 176 (539)
Q Consensus 159 ~~-~~~~pfIsaiEl~~l~ 176 (539)
.. +.+.|-|..|+|.+.+
T Consensus 112 ~~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 112 AETADGLANIDSIRVTGNG 130 (145)
T ss_dssp ECSTTCCCEEEEEEECSTT
T ss_pred EecCcCCEEEEEEEEEcCC
Confidence 43 3466889999997654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.44 E-value=1.4 Score=44.13 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=53.9
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCc-hhhcCCCCCCEEecc
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP-ESLGQLTALRRLNLN 500 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~L~ 500 (539)
++.+.+..+ +...-...+.++.+|+.+.+.++.+.-.-...|.+|.+|+.+.|..+ ++ .|. ..|.++++|+.+.+.
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 445555432 33333456778889999999888877444567888899999988755 54 343 467888888888876
Q ss_pred CC
Q 009236 501 GN 502 (539)
Q Consensus 501 ~N 502 (539)
.+
T Consensus 342 ~~ 343 (379)
T 4h09_A 342 KS 343 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 54
No 165
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=81.21 E-value=6.6 Score=32.70 Aligned_cols=40 Identities=23% Similarity=0.451 Sum_probs=32.2
Q ss_pred CcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeee
Q 009236 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAF 313 (539)
Q Consensus 269 ~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~ 313 (539)
.++|++.++..|.|.+.++++--. ...|.++|+|||..+.
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~ 79 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISA 79 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEee
Confidence 488998888789999999998621 2468899999998753
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.83 E-value=3.7 Score=41.00 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=63.1
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
++.+.+..+ +...-...+.++.+|+.+.+..+ +...-...+..|.+|+.+.+..+.++-.-...|.++.+|+.+.|..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 556666554 44333456788899999999754 4433345688999999999999888743446789999999999975
Q ss_pred CcCCccCC-cccccc
Q 009236 502 NTLSGRVP-AALGGR 515 (539)
Q Consensus 502 N~l~g~iP-~~l~~l 515 (539)
+ ++ .|+ .+|.++
T Consensus 320 ~-l~-~I~~~aF~~C 332 (379)
T 4h09_A 320 A-LK-TIQVYAFKNC 332 (379)
T ss_dssp T-CC-EECTTTTTTC
T ss_pred c-cc-EEHHHHhhCC
Confidence 5 44 343 345554
No 167
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=79.49 E-value=7.6 Score=33.17 Aligned_cols=85 Identities=16% Similarity=0.372 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeecCcceeeecCC--ceeeEEEEEEeeecCeeEEEEE
Q 009236 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 346 (539)
Q Consensus 269 ~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 346 (539)
.++|++.+...|.|.|.+.++-- ....|.++|+|||..+...+.+.. ++. .+... ...+....|.-+|.|
T Consensus 41 ~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~--~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 41 YIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEA--GIVANLNQGNNVIRA 112 (144)
T ss_dssp EEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEE--EEEEEECCCccEEEE
Confidence 48899888778999999999852 124689999999986433333322 222 12211 223445555544555
Q ss_pred c--cCCCchhhhhhhhhh
Q 009236 347 H--PKGGSHAIINAIEVF 362 (539)
Q Consensus 347 ~--p~~~~~~~lnalei~ 362 (539)
. ...+ .+-|.-|++.
T Consensus 113 ~~~~~~g-~~niD~i~v~ 129 (144)
T 2w47_A 113 TAIASDG-GPNVDYLKVF 129 (144)
T ss_dssp EECSTTC-CCEEEEEEEE
T ss_pred EEeCCCC-CEEEeEEEEE
Confidence 4 2222 2556665554
No 168
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=79.16 E-value=6.3 Score=33.88 Aligned_cols=85 Identities=16% Similarity=0.364 Sum_probs=49.5
Q ss_pred CcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeeeecCcceeeecCC--ceeeEEEEEEeeecCeeEEEEE
Q 009236 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 346 (539)
Q Consensus 269 ~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 346 (539)
.++|++.++..|.|.+.+.++.- ..+.|.++|+|||..+ ..+.+.. ++. .+... ...+....|.=+|.|
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~-~~v~~p~-Tg~W~~w~t~--~~~v~L~aG~ntI~l 110 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQI-KTLDFPT-NSNWTQWQTV--NVDIPLKAGTNSIKL 110 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEE-EEECCCC-CSCTTSCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEe-eEEEecC-CCCCCeeEEE--EEEEEECCCceEEEE
Confidence 48899888888999999999841 1247999999999865 2233222 222 12222 224455555544444
Q ss_pred cc--CCCchhhhhhhhhhh
Q 009236 347 HP--KGGSHAIINAIEVFE 363 (539)
Q Consensus 347 ~p--~~~~~~~lnalei~~ 363 (539)
.. ..+ .+-|.-|++-.
T Consensus 111 ~~~~~~g-~~niD~i~v~~ 128 (145)
T 2w3j_A 111 VAETADG-LANIDSIRVTG 128 (145)
T ss_dssp EECSTTC-CCEEEEEEECS
T ss_pred EEecCcC-CEEEEEEEEEc
Confidence 43 222 24566665543
No 169
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=78.92 E-value=1.9 Score=43.61 Aligned_cols=79 Identities=10% Similarity=0.221 Sum_probs=51.2
Q ss_pred EEEEEccCCCCcccCcchhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccC
Q 009236 422 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 501 (539)
Q Consensus 422 l~~L~L~~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~ 501 (539)
|+.+.|..+ ++..-...|.++.+|+.+.|..+ ++-.-...|.+|.+|+.+++.++.... ..+..+..|+.+.+..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 778888754 55444567999999999999765 553335679999999999999886542 4567788899888877
Q ss_pred CcCC
Q 009236 502 NTLS 505 (539)
Q Consensus 502 N~l~ 505 (539)
|.+.
T Consensus 388 ~~~~ 391 (394)
T 4gt6_A 388 GSID 391 (394)
T ss_dssp ----
T ss_pred CCEE
Confidence 6543
No 170
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=76.17 E-value=31 Score=29.82 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=54.4
Q ss_pred ceEE-eeecCCceeEEEEEEecccCC---CC--C-CCCcEEEEEcCeEEEEEecCCCCC---ccceEEEEEEEecCCeEE
Q 009236 85 NCYI-INRVPKGHYNVRIFFGLVTLT---SF--D-HEPLFDISVEGTQIYSLKSGWSDH---DDRAFAEALVFLRDGTVS 154 (539)
Q Consensus 85 ~~Y~-~~~~~~g~ylvRl~F~~~~y~---~~--~-~~~~F~v~~~~~~~~~v~~~f~~~---~~~~~~E~i~~~~~~~l~ 154 (539)
-.++ +.+.+.|+|.|++.|.-+... +. + ..+..+|++||..-.++. |... +..-...+.+..+.+.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~--fp~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY--FFNTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE--ECCCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE--eCCCCCCCcceEEEEEEEECCCceE
Confidence 3555 666778999999999865321 11 1 356799999985422232 3322 112223334445677778
Q ss_pred EEEeec--CCCCCeEeeEEEEEcC
Q 009236 155 ICFHST--GHGDPAILSLEILQVD 176 (539)
Q Consensus 155 v~f~~~--~~~~pfIsaiEl~~l~ 176 (539)
|.|... ....|-|-.|+|.++.
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEecCCCCCCcEEEEEEEeccc
Confidence 888766 4456889999987653
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=74.83 E-value=6.9 Score=39.32 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=57.5
Q ss_pred chhccCCCCCeEEcccCccCccCcccccCCCCCcEEeccCCcCCccCchhhcCCCCCCEEeccCCcCCccCC-ccccccc
Q 009236 438 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP-AALGGRL 516 (539)
Q Consensus 438 ~~l~~L~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L~~N~l~g~iP-~~l~~l~ 516 (539)
..+..+.+|+.+.+..+ +.-.-...|..|.+|+.++|..+ ++-.-...|.++.+|+.+.+..| ++ .|+ .+|.++.
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~ 366 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCI 366 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCC
Confidence 35677889999998765 55334567889999999999755 55233457889999999999877 55 444 4566653
Q ss_pred -cccccccc
Q 009236 517 -LHRASFKS 524 (539)
Q Consensus 517 -~~~l~~~~ 524 (539)
+..+.+.+
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 33344433
No 172
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=71.71 E-value=45 Score=28.15 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=56.3
Q ss_pred CCCceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEE-EEEecCCCCCc---cceEEEEEEEecCCeEEEEE
Q 009236 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI-YSLKSGWSDHD---DRAFAEALVFLRDGTVSICF 157 (539)
Q Consensus 82 g~~~~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~-~~v~~~f~~~~---~~~~~E~i~~~~~~~l~v~f 157 (539)
|..-.|++.+.+.|.|.|++.+.-+. ......+|++||... .++. |.... ........+..+.+.=.|+|
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~----~~~~~~~l~VNG~~~~~~v~--~p~Tg~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGT----TANRPMRITVNGNIVKPSMD--FVSTGAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCeEEEEEECCeEeeeEEE--ecCCCCCCeeEEEEEEEEECCCccEEEE
Confidence 45568888888889999999988542 235679999999541 2332 32211 11122223445666656666
Q ss_pred eec-CCCCCeEeeEEEEEcCC
Q 009236 158 HST-GHGDPAILSLEILQVDD 177 (539)
Q Consensus 158 ~~~-~~~~pfIsaiEl~~l~~ 177 (539)
... ..+.|-|..|+|.+.+.
T Consensus 113 ~~~~~~g~~niD~i~v~~~~~ 133 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFSANA 133 (144)
T ss_dssp EECSTTCCCEEEEEEEEECTT
T ss_pred EEeCCCCCEEEeEEEEEeCCC
Confidence 532 34568999999988653
No 173
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=68.20 E-value=53 Score=27.60 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=53.2
Q ss_pred CCCceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEE--EEEecCCCCCc---cceEEEEEEEecCCeEEEE
Q 009236 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI--YSLKSGWSDHD---DRAFAEALVFLRDGTVSIC 156 (539)
Q Consensus 82 g~~~~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~--~~v~~~f~~~~---~~~~~E~i~~~~~~~l~v~ 156 (539)
|..-.|++.+.+.|.|.|++.+.-+. ...+..+|++||..- .++. |.... .....+..+..+.+.=.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~g~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG----TANRNGSLVINGGSNGNYTVS--LPTTGAWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTTTTCEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCceEEEEECCEEcceeEEE--ecCCCCCCccEEEEEEEEECCCceEEE
Confidence 44457888877889999999987542 234679999998542 2332 32211 1112223333455555566
Q ss_pred EeecC-CCCCeEeeEEEEE
Q 009236 157 FHSTG-HGDPAILSLEILQ 174 (539)
Q Consensus 157 f~~~~-~~~pfIsaiEl~~ 174 (539)
|.... .+.|-|..|+|.+
T Consensus 112 l~~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTCCCEEEEEEEES
T ss_pred EEEcCCCCCEEEEEEEEec
Confidence 65433 4678899999875
No 174
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=66.88 E-value=15 Score=31.08 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred CcEEEEecCCCCcEEEEEEeeeccCCCCCCceEEEEEEECCeee
Q 009236 269 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA 312 (539)
Q Consensus 269 ~l~~~f~v~~~~~y~v~LhFaei~~~~~~~~~R~F~V~ing~~~ 312 (539)
.++|...++..|.|.|.+.++.- ....|..+|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 40 AVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSN 78 (139)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTT
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEc
Confidence 47888888778999999999752 1236899999999754
No 175
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=66.66 E-value=52 Score=26.94 Aligned_cols=86 Identities=21% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCCCceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEE-EecCCCCCcc-ceEEE--EEEEecCCeEEEE
Q 009236 81 EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYS-LKSGWSDHDD-RAFAE--ALVFLRDGTVSIC 156 (539)
Q Consensus 81 ~g~~~~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~-v~~~f~~~~~-~~~~E--~i~~~~~~~l~v~ 156 (539)
.|..-.|++.+.+.|.|.|++.+..+. .....++|++||..-.. + .|..... ..+.+ ..+..+.+.=.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~~~~v--~~p~tg~W~~w~~~~~~v~L~aG~ntI~ 110 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSISASGV--AFGSTGTWPAWTTKTVRVTLAAGVNKIK 110 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEE--CCCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEeeeEE--EecCCCCCCceEEEEEEEEECCCceEEE
Confidence 355568998888899999999998653 23567999999954222 2 2332111 01222 2334455555555
Q ss_pred Eeec-CCCCCeEeeEEE
Q 009236 157 FHST-GHGDPAILSLEI 172 (539)
Q Consensus 157 f~~~-~~~~pfIsaiEl 172 (539)
|... ..+.|-|..|+|
T Consensus 111 l~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 111 AVATTANGGPNVDKITL 127 (127)
T ss_dssp EEECSTTCCCEEEEEEC
T ss_pred EEEeCCCCCeEEEEEEC
Confidence 5543 345677877764
No 176
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=63.09 E-value=22 Score=30.77 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=31.8
Q ss_pred CcEEE-EecCCCCcEEEEEEeeeccCC-----CCCCceEEEEEEECCee
Q 009236 269 DLQYT-MDVDPNRNYSIWLHFAEIDNT-----ITGVGQRVFDILINGDI 311 (539)
Q Consensus 269 ~l~~~-f~v~~~~~y~v~LhFaei~~~-----~~~~~~R~F~V~ing~~ 311 (539)
.++|. ..++..|.|.|.+.|+.-... ......|...|+|||..
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~ 96 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP 96 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce
Confidence 48888 888778999999999864210 00124799999999975
No 177
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=62.54 E-value=52 Score=32.79 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=51.7
Q ss_pred Eeee-cCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCCCccceEEEEEEEecCCeEEEEEeecC-CCCC
Q 009236 88 IINR-VPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTG-HGDP 165 (539)
Q Consensus 88 ~~~~-~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~~~~~~~~E~i~~~~~~~l~v~f~~~~-~~~p 165 (539)
+|.+ .++|.|.|.+.+--. +.=.|...+. ..+. +........++.+.+.++.+.+.+.... +..|
T Consensus 79 ~f~v~~~~g~Y~v~v~~g~~--------~~~~v~~e~~--~~~~---~~~g~~~~~~~~v~~~~g~~~l~~~~~~~g~~~ 145 (375)
T 2o14_A 79 TFNVDLPNGLYEVKVTLGNT--------ARASVAAEGV--FQVI---NMTGDGAEDTFQIPVTDGQLNLLVTEGKAGTAF 145 (375)
T ss_dssp CEEEECCSEEEEEEEEESSC--------SEEEEEETTE--EEEE---EEESTTCEEEEEEEECSSEEEEEEEESSTTSCC
T ss_pred EEEEEcCCCceEEEEEecCC--------cceEEEEcce--EEEE---ecCCCcEEEEEEEEeeCCeEEEeeeeccCCCCc
Confidence 4433 357999999998754 2344555553 3332 2334456677788889999999976443 3457
Q ss_pred eEeeEEEEEcCC
Q 009236 166 AILSLEILQVDD 177 (539)
Q Consensus 166 fIsaiEl~~l~~ 177 (539)
++++||+.+.+.
T Consensus 146 ~l~~i~v~~~~~ 157 (375)
T 2o14_A 146 TLSALKIKKLSD 157 (375)
T ss_dssp EEEEEEEEEEES
T ss_pred ccceEEEeccCC
Confidence 899999998764
No 178
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=45.99 E-value=1.4e+02 Score=25.31 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=56.0
Q ss_pred CCCceEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCCCccceEEEEEEEecCCeEEEEEeec-
Q 009236 82 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHST- 160 (539)
Q Consensus 82 g~~~~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~~~~~~~~E~i~~~~~~~l~v~f~~~- 160 (539)
+.+-.+++.+.+.|.|-+.+.+.. .|. ...=.|.+||. -..|. |......+-+-.++..+.|+=.|.|+..
T Consensus 35 gdsVtf~VdVP~tG~YdLsI~Ya~-~~G----~k~n~L~VNG~-~~~V~--fP~tt~~~~~~~~V~L~aG~NtI~i~~~~ 106 (140)
T 2bgo_A 35 GSAVIWNVDVPVTGEYRINLTWSS-PYS----SKVNTLVMDGT-ALSYA--FAEATVPVTYVQTKTLSAGNHSFGVRVGS 106 (140)
T ss_dssp TCEEEEEECCCSSEEEEEEEEECC-CSS----EEEEEEEETTE-EEEEE--EESCCSCEEEEEEEEECSSCEEEEEECCS
T ss_pred CCEEEEEEecCCCcEEEEEEEecc-CCC----CceEEEEECCc-eeEEE--ECCcCCcEEEEEEEEecCCccEEEEEecC
Confidence 445567777788899998887632 232 23448899985 34443 3333332222123556777778888763
Q ss_pred -CCCCCeEeeEEEEEcCCCc
Q 009236 161 -GHGDPAILSLEILQVDDKA 179 (539)
Q Consensus 161 -~~~~pfIsaiEl~~l~~~~ 179 (539)
.-|-.+|-+|+|.+.+...
T Consensus 107 g~WG~~~iD~I~l~~a~~~~ 126 (140)
T 2bgo_A 107 SDWGYMNVHSLKLELLGGLT 126 (140)
T ss_dssp SSCCCCEEEEEEEEECC---
T ss_pred CCceeEEEEEEEEEcCCCcc
Confidence 3577899999999877643
No 179
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=21.93 E-value=3.4e+02 Score=28.64 Aligned_cols=84 Identities=13% Similarity=0.230 Sum_probs=50.6
Q ss_pred eEEeeecCCceeEEEEEEecccCCCCCCCCcEEEEEcCeEEEEEecCCCC-----------CccceEEEEE-EEecCCeE
Q 009236 86 CYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSD-----------HDDRAFAEAL-VFLRDGTV 153 (539)
Q Consensus 86 ~Y~~~~~~~g~ylvRl~F~~~~y~~~~~~~~F~v~~~~~~~~~v~~~f~~-----------~~~~~~~E~i-~~~~~~~l 153 (539)
-|.+.-...++|-||..++... +..-.|.|..||+... ...+|.. ....+++|.- +..+.+.+
T Consensus 489 ~~~i~n~~~~~Y~VR~RYAS~~----d~~~~~~~~~~~~~i~-n~~~fp~T~~~~~~v~G~nG~y~~~~~~~~~~p~g~~ 563 (587)
T 4d8m_A 489 GIQITNQTKQKYEIRCRYASKG----DNNVYFNVDLSENPFR-NSISFGSTESSVVGVQGENGKYILKSITTVEIPAGSF 563 (587)
T ss_dssp EEEEEECSCEEEEEEEEEEESS----CEEEEEEECCSSSCEE-EEEEECCCTTCSSSEECSSSEEEEEEEEEEEECSEEE
T ss_pred EEEEEccccceEEEEEEEecCC----CceEEEEEcCCCceee-ccCCCCccccccccccccCCceEeecCCceEecCCcE
Confidence 4556445568999999998531 2333477777774320 1112321 1233444411 12367888
Q ss_pred EEEEeecCCCCCeEeeEEEEE
Q 009236 154 SICFHSTGHGDPAILSLEILQ 174 (539)
Q Consensus 154 ~v~f~~~~~~~pfIsaiEl~~ 174 (539)
.|.+.+.+.+-=||--||.+|
T Consensus 564 t~~i~nn~~~~~~iDRIEFiP 584 (587)
T 4d8m_A 564 YVHITNQGSSDLFLDRIEFVP 584 (587)
T ss_dssp EEEEEECSSSCEEEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEEEeee
Confidence 888888666667899999998
Done!