Query 009238
Match_columns 539
No_of_seqs 141 out of 230
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 22:06:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07059 DUF1336: Protein of u 100.0 5.4E-74 1.2E-78 559.5 21.5 222 284-525 1-227 (227)
2 PLN00188 enhanced disease resi 100.0 1.2E-65 2.6E-70 559.4 19.0 236 262-538 480-718 (719)
3 PF15434 FAM104: Family 104 27.5 47 0.001 30.6 2.3 26 38-65 7-32 (110)
4 PF06348 DUF1059: Protein of u 13.0 36 0.00078 27.4 -1.5 25 493-517 7-31 (57)
5 PHA02777 major capsid L1 prote 9.2 1.7E+02 0.0036 33.8 1.5 56 31-98 292-351 (555)
6 KOG1909 Ran GTPase-activating 9.2 1.9E+02 0.0042 31.8 1.8 66 464-529 29-102 (382)
7 COG1521 Pantothenate kinase ty 8.5 7.6E+02 0.016 25.7 5.7 106 372-501 19-131 (251)
8 PF04308 DUF458: Protein of un 8.5 2.2E+02 0.0049 27.3 1.8 33 467-504 95-127 (144)
9 KOG3748 Uncharacterized conser 7.1 3.2E+02 0.007 29.5 2.4 50 450-506 90-142 (477)
10 PF12355 Dscam_C: Down syndrom 7.0 3.1E+02 0.0068 25.7 2.0 27 48-79 68-94 (124)
No 1
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=5.4e-74 Score=559.53 Aligned_cols=222 Identities=44% Similarity=0.736 Sum_probs=207.5
Q ss_pred eecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCC-CCCcEEEEEEEcCCCCCc
Q 009238 284 WSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHA-KLPPMLVVNVQIPLYPTA 362 (539)
Q Consensus 284 WSepd~s~FkVRG~~Yl~DKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~-~~P~vfIVNiQvPg~Pps 362 (539)
||+|++++|+|||+|||+||||+||++ ++|+++|||||++++|++|||+++.++.+.... +.||+||||||||+||++
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~-~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGP-PLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCC-cceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCccc
Confidence 999999999999999999999999987 599999999999999999999999999877654 599999999999999999
Q ss_pred cccccCCCCceEEEEEEEeCchhhccCChhhHhhhhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHH
Q 009238 363 IFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAE 441 (539)
Q Consensus 363 lF~~~~DGeG~SlVlYF~l~e~~~keLp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIp~VVnGpwl~l~aae 441 (539)
+| ++.||+|||+|+||++++++.++.++++.++++||++.+ +..|+|| +||||||+|+||+|+
T Consensus 80 ~f-~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd---------~~~d~frn~RfKlIp~vv~gpwi------ 143 (227)
T PF07059_consen 80 MF-GEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGD---------EVEDAFRNERFKLIPRVVNGPWI------ 143 (227)
T ss_pred cc-cccccCCceEEEEEecCCccccccCchhHHHHHHHHhcC---------ccchhhhhccEEEEEEEcCCchh------
Confidence 99 999999999999999999998888888999999999833 1127899 999999999999996
Q ss_pred HHHHHhh-CCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceece
Q 009238 442 RKLLQAY-NEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCC 518 (539)
Q Consensus 442 r~l~qav-ngKPvLig--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~ 518 (539)
+++++ |+|||||| ++|+||+|+||||||||||+ |+|||+++++|++|+|+|+|||||||||+++||||||||||
T Consensus 144 --vr~~v~~~kP~lig~~~~~~y~~g~~y~E~dvdi~s-s~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~ 220 (227)
T PF07059_consen 144 --VRKAVYNGKPVLIGKKLQHRYFRGPNYLEIDVDIHS-SYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGC 220 (227)
T ss_pred --hhhhhcCCCceeecCccceEEeeCCCeEEEEEEecc-HHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeE
Confidence 45555 99999997 69999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEecccc
Q 009238 519 IRINGID 525 (539)
Q Consensus 519 vRLn~ID 525 (539)
+||++||
T Consensus 221 ~Rl~~id 227 (227)
T PF07059_consen 221 VRLNHID 227 (227)
T ss_pred EEeeecC
Confidence 9999998
No 2
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1.2e-65 Score=559.41 Aligned_cols=236 Identities=26% Similarity=0.357 Sum_probs=216.2
Q ss_pred eeeecCCCcccccCCCCCCCCceecCCCCceEEcCCCcccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccc
Q 009238 262 LSRPISGAQVPFCPIEKKMLDSWSQIEPNTFKVRGVNYLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAIS 341 (539)
Q Consensus 262 l~rp~aG~svp~~~~ek~~~~~WSepd~s~FkVRG~~Yl~DKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~ 341 (539)
+.-..-++++++.+.+ ++.+||++|++++|+|||+|||+||+|+||++ ++|+|+|||||++++|++|||+|++++++.
T Consensus 480 ~d~~~~~g~l~~~~~~-~~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~-~l~~lvgvDwfks~~ridhVa~r~~~~vq~ 557 (719)
T PLN00188 480 IDLSCFSGNLRRDDRD-KARDCWRISDGNNFKVRSKNFCYDKSKIPAGK-HLMDLVAVDWFKDTKRMDHVARRKGCAAQV 557 (719)
T ss_pred ccccccccccccCCCC-CCCCCccCCCCcceEEcCCCcccCCccccCCc-cceeeEEEEEEcCCchhhHhhcCCCchhhh
Confidence 3334578889998887 49999999999999999999999999999988 589999999999999999999999999988
Q ss_pred cCCCCCcEEEEEEEcCCCCCccccccCCCCceEEEEEEEeCchhhccCChhhHhhhhhhcchhhhhhcCCCCCCchhhh-
Q 009238 342 SHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR- 420 (539)
Q Consensus 342 ~~~~~P~vfIVNiQvPg~PpslF~~~~DGeG~SlVlYF~l~e~~~keLp~~f~~li~Rfiddevekvk~f~~d~~d~FR- 420 (539)
...+.||+||||||||+.|. ||+|+||++++ +++ ++++.||+++ +|+||
T Consensus 558 a~~k~~F~fiVNlQvPg~~~-----------ys~V~Yf~~~~-----l~~--~sLl~rF~~G------------DD~fRn 607 (719)
T PLN00188 558 AAEKGLFSFVVNLQVPGSTH-----------YSMVFYFVTKE-----LVP--GSLLQRFVDG------------DDEFRN 607 (719)
T ss_pred hcccCCcEEEEEEEccCCCc-----------eEEEEEEeccC-----CCC--chHHHHhccC------------chhHhh
Confidence 88889999999999999765 99999999854 444 4788998874 49999
Q ss_pred cceeeEeEeecCccchhhHHHHHHHHhhCCceeeec--CcceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEe
Q 009238 421 ERLKILGRVVNVEDLHLSAAERKLLQAYNEKPVLSR--PQHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILD 498 (539)
Q Consensus 421 eRFKLIp~VVnGpwl~l~aaer~l~qavngKPvLig--~q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVD 498 (539)
+||||||.|++|||| |+++||+||||+| ++|+||+|+|||||||||++ |.||++++++++||+++||||
T Consensus 608 sRfKLIP~Iv~GpWi--------Vk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~s-s~va~~v~~l~~g~~~~lvvD 678 (719)
T PLN00188 608 SRLKLIPSVPKGSWI--------VRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGS-STVANGVLGLVIGVITTLVVD 678 (719)
T ss_pred CceEEeccccCCceE--------EEeccCCcceEeeeecceeEecCCCeEEEEEeecc-HHHHHHHHHHHHhhhhheEEE
Confidence 999999999999996 6899999999999 59999999999999999999 789999999999999999999
Q ss_pred eEEEeecCCCCCcccceeceEEecccccCCccccCCCCCC
Q 009238 499 VGLTIQGNKVDELPEQILCCIRINGIDYMNYHQLGHKEET 538 (539)
Q Consensus 499 mGFvIEGqteeELPErLLG~vRLn~IDl~~A~~l~l~~~~ 538 (539)
|||+|||+++|||||||||||||++||+..|....+..++
T Consensus 679 ~af~ie~~~~eELPE~llG~~Rl~~i~~~~A~~~~~~~~~ 718 (719)
T PLN00188 679 MAFLVQANTYEELPERLIGAVRVSHVELSSAIVPKLDPDT 718 (719)
T ss_pred EEEEEecCChhhCchhheeeEEecccchhhccccCCCCCC
Confidence 9999999999999999999999999999999887766543
No 3
>PF15434 FAM104: Family 104
Probab=27.48 E-value=47 Score=30.61 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccccc
Q 009238 38 GSLDKVDRPPPVDRHSSFTNPALQGSVD 65 (539)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~ 65 (539)
+.-++--+++++- |+-.||.||.+.|
T Consensus 7 g~eEd~h~~pq~K--R~~r~~v~qds~d 32 (110)
T PF15434_consen 7 GNEEDNHHSPQPK--RSSRNPVFQDSWD 32 (110)
T ss_pred CcccccccCCccc--ccCCCcccccccc
Confidence 4445555556665 8889999998876
No 4
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=13.04 E-value=36 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.4
Q ss_pred ceEEEeeEEEeecCCCCCcccceec
Q 009238 493 KICILDVGLTIQGNKVDELPEQILC 517 (539)
Q Consensus 493 k~LVVDmGFvIEGqteeELPErLLG 517 (539)
+.++.|.+|+|.|.+++||-+++.-
T Consensus 7 ~d~g~~C~~~~~a~tedEll~~~~~ 31 (57)
T PF06348_consen 7 RDVGPDCGFVIRAETEDELLEAVVE 31 (57)
T ss_pred cccCCCCCeEEeeCCHHHHHHHHHH
Confidence 3456889999999999999887653
No 5
>PHA02777 major capsid L1 protein; Provisional
Probab=9.22 E-value=1.7e+02 Score=33.79 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=31.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCcccccccccccchhhhccCCC----CCCCceeecCCcccccCC
Q 009238 31 ASRLPTDGSLDKVDRPPPVDRHSSFTNPALQGSVDDSWFDSVAIFESDGE----DDDDFVSVQDDVVSLNGS 98 (539)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~w~ds~~~~~sd~~----~~ddf~sv~~d~~s~~~~ 98 (539)
.||+.. ....+..--.+|..+-.|-||+|.++ -.-+||-|-+ -|+||. |++.|.-.
T Consensus 292 nRr~qQ-V~V~Dp~FLs~P~~lv~fdNPafd~d-------~tl~Fe~d~~~~~a~d~dF~----DIv~L~RP 351 (555)
T PHA02777 292 GRQFGQ-VRVGDAAFLDRAAVLFQAENPAFDAD-------ISILFEDDLADAERLDDDFQ----DIQRLSRP 351 (555)
T ss_pred cceeEE-EeccCcchhcCcccceeecCCCcCCc-------cceecccccccccCCCcccc----ccccccCc
Confidence 444433 33344444455656677999999763 3345565532 156884 66666544
No 6
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=9.16 E-value=1.9e+02 Score=31.84 Aligned_cols=66 Identities=18% Similarity=0.338 Sum_probs=56.2
Q ss_pred CCCeEEEEEEccCchHHHHHHHHHhhcccceE-EEeeEEEeecCCCCCcccc-------eeceEEecccccCCc
Q 009238 464 GENYLEIDIDMHRFSYISRKGFEAFLDRLKIC-ILDVGLTIQGNKVDELPEQ-------ILCCIRINGIDYMNY 529 (539)
Q Consensus 464 G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~L-VVDmGFvIEGqteeELPEr-------LLG~vRLn~IDl~~A 529 (539)
.+.|-+||++=.+|+.=|.+.+.-++...|.| .+++.=..-|+-.+|+||. |+||-+|..+|+++.
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 45688999999999998999998888888776 4677778889999999986 578889999999883
No 7
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=8.50 E-value=7.6e+02 Score=25.70 Aligned_cols=106 Identities=20% Similarity=0.219 Sum_probs=57.8
Q ss_pred ceEEEEEEEeCchhhccCChhhHhhhhhhcchhhhhhcCCCCCCchhhh-cceeeEeEeecCccchhhHHHHHHHHhhCC
Q 009238 372 GISIVLYFKLNESYAKELPLHFQESIRRIIDDEVEKVKGFPVDTIVPFR-ERLKILGRVVNVEDLHLSAAERKLLQAYNE 450 (539)
Q Consensus 372 G~SlVlYF~l~e~~~keLp~~f~~li~Rfiddevekvk~f~~d~~d~FR-eRFKLIp~VVnGpwl~l~aaer~l~qavng 450 (539)
+-.++.+|++..+-... .+.+...+..+++. + .++ =...+|..|+ |-+. -..+.++.+-...
T Consensus 19 ~~~~~~~~r~~t~~~~~-~del~~~~~~l~~~------------~-~~~~~~~~~issvv--p~~~-~~~~~~~~~~f~~ 81 (251)
T COG1521 19 GGKVVQTWRLATEDLLT-EDELGLQLHNLFDG------------N-SVRDIDGIVISSVV--PPLG-IFLEAVLKEYFKV 81 (251)
T ss_pred CCeEEEEEeeccccccc-HHHHHHHHHHHhcc------------c-cccccccceeeccC--ccHH-HHHHHHHHHHhcc
Confidence 35888999987643221 12222222232221 1 223 2568899998 3222 2335567788888
Q ss_pred ce-eeecC---cceeeeCCCeEEEEEEccCchHHHHHHHHHhh--cccceEEEeeEE
Q 009238 451 KP-VLSRP---QHEFYLGENYLEIDIDMHRFSYISRKGFEAFL--DRLKICILDVGL 501 (539)
Q Consensus 451 KP-vLig~---q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~--g~lk~LVVDmGF 501 (539)
+| ++..+ ...+...++|-|+.+|.-- . .+.... +.. -+|||+|=
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~p~elG~DR~~-n-----~vaA~~~~~~~-~vVVD~GT 131 (251)
T COG1521 82 KPLVVISPKQLLGIRVLYDNPEELGADRIA-N-----AVAAYHKYGKA-VVVVDFGT 131 (251)
T ss_pred CceeeechhhccCCcccCCChhhhcHHHHH-H-----HHHHHHHcCCc-EEEEEcCC
Confidence 99 55553 2233455899999999743 1 222222 222 68888873
No 8
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=8.49 E-value=2.2e+02 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=25.3
Q ss_pred eEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEee
Q 009238 467 YLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQ 504 (539)
Q Consensus 467 YlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIE 504 (539)
=+||.+||+. ..-.|..+.-+.|++.. |||.-.
T Consensus 95 ~~EiHiDIg~-~g~T~~~i~E~vG~v~~----~G~~~k 127 (144)
T PF04308_consen 95 DLEIHIDIGT-NGKTRELIKEVVGYVEG----MGFEAK 127 (144)
T ss_pred cEEEEEEcCC-CCchHHHHHHHHHHHHH----CCceEE
Confidence 4699999998 77788888888887765 565543
No 9
>KOG3748 consensus Uncharacterized conserved protein [Function unknown]
Probab=7.09 E-value=3.2e+02 Score=29.51 Aligned_cols=50 Identities=28% Similarity=0.411 Sum_probs=40.7
Q ss_pred CceeeecC---cceeeeCCCeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecC
Q 009238 450 EKPVLSRP---QHEFYLGENYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGN 506 (539)
Q Consensus 450 gKPvLig~---q~~Yy~G~NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGq 506 (539)
.+|+|-+| ....++|+|-.|-.||-..| +..+.+.+...++-+||+-|.+
T Consensus 90 ts~~Lq~PV~i~Anv~~~P~~~et~vD~s~F-------veka~d~FPDaT~SLGWTk~sn 142 (477)
T KOG3748|consen 90 TSPVLQYPVILHANVFRSPRSVETEVDPSTF-------VEKAKDLFPDATLSLGWTKQSN 142 (477)
T ss_pred cccccccceEEecccccCCCCCccccCchhH-------HHHHHHhCCCcEEeeccccCCC
Confidence 67888774 55789999999999998765 4566777889999999998853
No 10
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=7.02 E-value=3.1e+02 Score=25.71 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=20.6
Q ss_pred CCCCCCCCCCCCcccccccccccchhhhccCC
Q 009238 48 PVDRHSSFTNPALQGSVDDSWFDSVAIFESDG 79 (539)
Q Consensus 48 ~~~~~~~~~n~~~~~~~~~~w~ds~~~~~sd~ 79 (539)
+|++...-+|+.|.-|.+ |.-|.|.+|
T Consensus 68 PPPRn~D~~nsSfNDSk~-----SnEiSEAEC 94 (124)
T PF12355_consen 68 PPPRNHDVSNSSFNDSKD-----SNEISEAEC 94 (124)
T ss_pred cCCCCCCCCCcccccccc-----cchhhhhhc
Confidence 333344577899988886 889999999
Done!