Query 009238
Match_columns 539
No_of_seqs 141 out of 230
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:57:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 15.1 42 0.0014 24.6 0.5 19 493-511 14-32 (37)
2 1tac_A TAT protein; transcript 11.7 1.9E+02 0.0064 24.7 3.5 17 13-30 42-58 (86)
3 1m8o_B Platele integrin BETA3 9.0 2.5E+02 0.0084 20.9 3.0 14 50-63 34-47 (47)
4 2knc_B Integrin beta-3; transm 6.4 2E+02 0.0067 23.7 1.5 12 52-63 68-79 (79)
5 3mi9_C Protein TAT; P-TEFB, HI 5.7 1.5E+02 0.0052 25.2 0.5 11 13-23 42-52 (86)
6 1tvs_A Transactivator protein; 4.9 2E+02 0.0068 23.9 0.7 9 22-30 56-64 (75)
7 2zou_A Spondin-1; beta-sandwic 4.9 2.9E+02 0.01 24.6 1.8 24 499-522 54-80 (149)
8 2brq_C Integrin beta-7 subunit 4.7 1.9E+02 0.0065 19.9 0.3 13 52-64 15-27 (31)
9 3bqa_A Sensor protein PHOQ; hi 4.7 2.5E+02 0.0085 26.0 1.2 20 458-477 68-87 (148)
10 2jf1_T Integrin beta-2 subunit 4.6 3.4E+02 0.012 18.9 1.6 14 50-63 22-35 (35)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=15.11 E-value=42 Score=24.57 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.1
Q ss_pred ceEEEeeEEEeecCCCCCc
Q 009238 493 KICILDVGLTIQGNKVDEL 511 (539)
Q Consensus 493 k~LVVDmGFvIEGqteeEL 511 (539)
=++..|+||.++...+|.+
T Consensus 14 FSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 14 FSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred EEEEeccccccCCcchhhh
Confidence 3789999999998766554
No 2
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=11.66 E-value=1.9e+02 Score=24.65 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=7.3
Q ss_pred ccccccchhhhhhccchh
Q 009238 13 GGRSSSSKKKKKKSFKRV 30 (539)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (539)
|+-+++-+||+ |+|||.
T Consensus 42 GLGIsYgRkkR-r~RRr~ 58 (86)
T 1tac_A 42 GLGISYGRKKR-RQRRRP 58 (86)
T ss_dssp TSSSSSCCCSG-GGSCTT
T ss_pred CCceEeccccc-cccCCC
Confidence 44455544333 333443
No 3
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=9.00 E-value=2.5e+02 Score=20.90 Aligned_cols=14 Identities=36% Similarity=0.629 Sum_probs=10.6
Q ss_pred CCCCCCCCCCcccc
Q 009238 50 DRHSSFTNPALQGS 63 (539)
Q Consensus 50 ~~~~~~~n~~~~~~ 63 (539)
.+-.+|.||+|+|.
T Consensus 34 ~~tttf~np~~~~~ 47 (47)
T 1m8o_B 34 EATSTFTNITYRGT 47 (47)
T ss_dssp SSSCCCTTSCCCCC
T ss_pred CcceeeeCCcccCC
Confidence 33467999999874
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.39 E-value=2e+02 Score=23.66 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=9.7
Q ss_pred CCCCCCCCcccc
Q 009238 52 HSSFTNPALQGS 63 (539)
Q Consensus 52 ~~~~~n~~~~~~ 63 (539)
..+|.||+|+|.
T Consensus 68 ttt~~nP~~~~~ 79 (79)
T 2knc_B 68 TSTFTNITYRGT 79 (79)
T ss_dssp SCCSCCCSCCCC
T ss_pred ccCccCCCcCCC
Confidence 467999999874
No 5
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=5.71 E-value=1.5e+02 Score=25.21 Aligned_cols=11 Identities=27% Similarity=0.178 Sum_probs=3.9
Q ss_pred ccccccchhhh
Q 009238 13 GGRSSSSKKKK 23 (539)
Q Consensus 13 ~~~~~~~~~~~ 23 (539)
|+-+++-+||+
T Consensus 42 GLGIsYgRkkR 52 (86)
T 3mi9_C 42 ALGISYGRKKR 52 (86)
T ss_dssp TSCCCSCC---
T ss_pred CCccccccccc
Confidence 44455544433
No 6
>1tvs_A Transactivator protein; transcription regulation; NMR {Equine infectious anemia virus} SCOP: j.40.1.1 PDB: 1tvt_A
Probab=4.88 E-value=2e+02 Score=23.93 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=3.6
Q ss_pred hhhhccchh
Q 009238 22 KKKKSFKRV 30 (539)
Q Consensus 22 ~~~~~~~~~ 30 (539)
||||+|||.
T Consensus 56 KKRrqRRr~ 64 (75)
T 1tvs_A 56 KKNKQRLKA 64 (75)
T ss_dssp HHHHHHHHH
T ss_pred HhhhcccCC
Confidence 333334444
No 7
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=4.87 E-value=2.9e+02 Score=24.63 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=18.9
Q ss_pred eEEEeecCCCCCc---ccceeceEEec
Q 009238 499 VGLTIQGNKVDEL---PEQILCCIRIN 522 (539)
Q Consensus 499 mGFvIEGqteeEL---PErLLG~vRLn 522 (539)
.||+||++.+... +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 4999999877654 56789999874
No 8
>2brq_C Integrin beta-7 subunit; structural protein, cytoskeleton/complex, actin-binding, cytoskeleton, immunoglobulin like, cell adhesion; HET: GSH; 2.10A {Homo sapiens}
Probab=4.66 E-value=1.9e+02 Score=19.91 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=10.1
Q ss_pred CCCCCCCCccccc
Q 009238 52 HSSFTNPALQGSV 64 (539)
Q Consensus 52 ~~~~~n~~~~~~~ 64 (539)
-.+|.||+|+|.-
T Consensus 15 tttf~Np~~~~~~ 27 (31)
T 2brq_C 15 ITTTINPRFQEAD 27 (31)
T ss_pred cccEECccccccC
Confidence 3569999998764
No 9
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=4.66 E-value=2.5e+02 Score=26.00 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=17.1
Q ss_pred cceeeeCCCeEEEEEEccCc
Q 009238 458 QHEFYLGENYLEIDIDMHRF 477 (539)
Q Consensus 458 q~~Yy~G~NYlEIDVDIhSF 477 (539)
+..|.+.++|+|||.|++..
T Consensus 68 ~~eWLkk~gf~Eidtd~~~s 87 (148)
T 3bqa_A 68 QPDWLKSNGFHEIEADVNDT 87 (148)
T ss_dssp CGGGSSSCEEEEEEEEHHHH
T ss_pred CHHHhcCCCcEEEecCcchH
Confidence 46788889999999999873
No 10
>2jf1_T Integrin beta-2 subunit; actin-binding, cell adhesion, transmembrane, acetylation, polymorphism, cytoskeleton, glycoprotein, filamin, complex; 2.2A {Homo sapiens}
Probab=4.62 E-value=3.4e+02 Score=18.91 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=10.3
Q ss_pred CCCCCCCCCCcccc
Q 009238 50 DRHSSFTNPALQGS 63 (539)
Q Consensus 50 ~~~~~~~n~~~~~~ 63 (539)
.+-..|.||+|+|.
T Consensus 22 ~~ttt~~np~~~~~ 35 (35)
T 2jf1_T 22 SATTTVMNPKFAES 35 (35)
T ss_pred CcceeeeCCcccCC
Confidence 33467999999874
Done!