Query 009238
Match_columns 539
No_of_seqs 141 out of 230
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 21:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009238.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009238hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eucb1 c.23.4.1 (B:246-393) S 7.1 1.3E+02 0.0096 25.4 3.1 27 426-454 21-47 (148)
2 d2gw6a1 c.52.2.1 (A:2-123) tRN 6.1 68 0.0049 26.7 0.6 66 299-382 56-121 (122)
3 d2nu7b1 c.23.4.1 (B:239-388) S 4.9 2.1E+02 0.015 24.0 3.1 26 426-453 21-46 (150)
4 d2fsra1 d.108.1.1 (A:4-167) Pr 4.5 1.3E+02 0.0097 22.7 1.4 43 466-523 122-164 (164)
5 d1unnc_ d.240.1.1 (C:) DNA pol 3.4 2.7E+02 0.02 20.9 2.4 25 510-535 86-110 (111)
6 d2qqra1 b.34.9.1 (A:897-955) J 3.3 2.1E+02 0.016 20.9 1.5 22 457-478 14-42 (59)
7 d2j5ha1 g.3.11.7 (A:1-39) Crip 3.0 1.8E+02 0.013 19.8 0.7 7 201-207 2-8 (39)
8 d1ansa_ g.11.1.1 (A:) Neurotox 2.7 3.2E+02 0.023 16.8 1.6 14 2-15 9-26 (27)
9 d2fd6u3 g.7.1.3 (U:92-188) Uro 2.4 1.8E+02 0.013 23.0 0.1 20 189-208 42-61 (97)
10 d1sg1x1 g.24.1.1 (X:2-56) Low 2.4 1.7E+02 0.013 21.2 -0.1 22 195-216 20-41 (55)
No 1
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.06 E-value=1.3e+02 Score=25.38 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.8
Q ss_pred EeEeecCccchhhHHHHHHHHhhCCceee
Q 009238 426 LGRVVNVEDLHLSAAERKLLQAYNEKPVL 454 (539)
Q Consensus 426 Ip~VVnGpwl~l~aaer~l~qavngKPvL 454 (539)
|+.++||--+ .++..=+++.+|+||+=
T Consensus 21 IG~i~NGAGl--aMaTmD~i~~~Gg~pAN 47 (148)
T d1eucb1 21 IACFVNGAGL--AMATCDIIFLNGGKPAN 47 (148)
T ss_dssp EEEEESSHHH--HHHHHHHHHHTTCCBSE
T ss_pred EEEEecCCcc--chhHHHHHHHcCCCeee
Confidence 8899999754 45666788999999984
No 2
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.14 E-value=68 Score=26.74 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=40.9
Q ss_pred cccCCccccCCCCCcceeeeeeEEeeCCccchhhcccCCcccccCCCCCcEEEEEEEcCCCCCccccccCCCCceEEEEE
Q 009238 299 YLRDKKKEFAHNCAAYYPFGVDVFLSQRKIDHIARFVELPAISSHAKLPPMLVVNVQIPLYPTAIFQSEIDGEGISIVLY 378 (539)
Q Consensus 299 Yl~DKkKvpAg~~~lf~lvGVDlFkS~~kidhIAr~~~lp~~~~~~~~P~vfIVNiQvPg~PpslF~~~~DGeG~SlVlY 378 (539)
||.-|+|.-. ...++-|+-++.=.+-+++..|-.+..+|. .....|.-|++-|+=+. |-|+|
T Consensus 56 yL~gr~~~~~-~~qv~iP~p~~~sls~~~i~~~~~~~~~p~--~~~~~~~s~tLai~d~D---------------STIvY 117 (122)
T d2gw6a1 56 CLVGTEIEGE-GLQTVVPTPITASLSHNRIREILKASRKLQ--GDPDLPMSFTLAIVESD---------------STIVY 117 (122)
T ss_dssp EEEEESSTTC-CCCEEEEEETTCEEEHHHHHHHHHHHHHHT--TCSSCCCEEEEEEECTT---------------SCEEE
T ss_pred EEEcccccCC-CccEEEeeccccccCHHHHHHHHHhccCCc--CCcCccceEEEEEEcCC---------------CeEEE
Confidence 6666666544 346788888877777777777754432331 11235566666677666 66788
Q ss_pred EEeC
Q 009238 379 FKLN 382 (539)
Q Consensus 379 F~l~ 382 (539)
|+++
T Consensus 118 Yrmt 121 (122)
T d2gw6a1 118 YKLT 121 (122)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 8875
No 3
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.86 E-value=2.1e+02 Score=24.04 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=20.9
Q ss_pred EeEeecCccchhhHHHHHHHHhhCCcee
Q 009238 426 LGRVVNVEDLHLSAAERKLLQAYNEKPV 453 (539)
Q Consensus 426 Ip~VVnGpwl~l~aaer~l~qavngKPv 453 (539)
|+.++||--+ ..+.-=+++.+|+||+
T Consensus 21 Ig~i~nGAGl--amaTmD~i~~~Gg~pA 46 (150)
T d2nu7b1 21 IGCMVNGAGL--AMGTMDIVKLHGGEPA 46 (150)
T ss_dssp EEEEESSHHH--HHHHHHHHHHTTCCBC
T ss_pred EEEEEcCCcc--chhhHHHHHHCCCCee
Confidence 8899999765 4455678889999998
No 4
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.48 E-value=1.3e+02 Score=22.74 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=27.7
Q ss_pred CeEEEEEEccCchHHHHHHHHHhhcccceEEEeeEEEeecCCCCCcccceeceEEecc
Q 009238 466 NYLEIDIDMHRFSYISRKGFEAFLDRLKICILDVGLTIQGNKVDELPEQILCCIRING 523 (539)
Q Consensus 466 NYlEIDVDIhSFS~IARk~l~lv~g~lk~LVVDmGFvIEGqteeELPErLLG~vRLn~ 523 (539)
.-+++.++..+ ..+.+++.. +||++||..+.+-|+.+ .-|+++
T Consensus 122 ~~v~~~v~~~N--~~S~rl~ek-----------~GF~~eg~~~~~~~~~~--~yr~~~ 164 (164)
T d2fsra1 122 PTLVSYVSPQN--RKSAAVAER-----------IGGTLDPLAPRSDPEDL--VYRYHQ 164 (164)
T ss_dssp SCEEEEECTTC--HHHHHHHHH-----------TTCEECTTSCCSSTTCE--EEEECC
T ss_pred eeEEEEECcCC--HHHHHHHHH-----------CCCEEeeeEcccCCCce--EEeeCC
Confidence 44566666665 333444333 58999999998888876 456553
No 5
>d1unnc_ d.240.1.1 (C:) DNA polymerase IV {Escherichia coli [TaxId: 562]}
Probab=3.41 E-value=2.7e+02 Score=20.92 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=20.9
Q ss_pred CcccceeceEEecccccCCccccCCC
Q 009238 510 ELPEQILCCIRINGIDYMNYHQLGHK 535 (539)
Q Consensus 510 ELPErLLG~vRLn~IDl~~A~~l~l~ 535 (539)
+-|=||||. ++.+++...+.|+.|.
T Consensus 86 ~~piRLlGV-~v~~l~~~~~~QlsL~ 110 (111)
T d1unnc_ 86 GRGVRLVGL-HVTLLDPQMERQLVLG 110 (111)
T ss_dssp TCCEEEEEE-EEECCCCCCCCBCCCC
T ss_pred CCCEeEEEE-EeecCCCCCcccCCCC
Confidence 347899997 8999999999999874
No 6
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.32 E-value=2.1e+02 Score=20.93 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=17.6
Q ss_pred CcceeeeC-------CCeEEEEEEccCch
Q 009238 457 PQHEFYLG-------ENYLEIDIDMHRFS 478 (539)
Q Consensus 457 ~q~~Yy~G-------~NYlEIDVDIhSFS 478 (539)
...+||++ ..|.||..|=+|||
T Consensus 14 kNgryY~c~V~~~~~qtfyeV~FdDgS~s 42 (59)
T d2qqra1 14 KNGRFYQCEVVRLTTETFYEVNFDDGSFS 42 (59)
T ss_dssp TTSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred cCCcEEEEEEEEeeeEEEEEEEecCCCcc
Confidence 45678765 37999999999987
No 7
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.98 E-value=1.8e+02 Score=19.76 Aligned_cols=7 Identities=43% Similarity=1.042 Sum_probs=4.9
Q ss_pred ccccccC
Q 009238 201 DNCGIIP 207 (539)
Q Consensus 201 ~~~~~~~ 207 (539)
+|||++|
T Consensus 2 enCgsvp 8 (39)
T d2j5ha1 2 EHCGSIL 8 (39)
T ss_dssp CSSCCCC
T ss_pred Ccccccc
Confidence 5787766
No 8
>d1ansa_ g.11.1.1 (A:) Neurotoxin III (ATX III) {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=2.70 E-value=3.2e+02 Score=16.82 Aligned_cols=14 Identities=43% Similarity=1.137 Sum_probs=9.7
Q ss_pred Cccc----cCCCcccccc
Q 009238 2 GACV----STPRGCVGGR 15 (539)
Q Consensus 2 ~~~~----~~~~~~~~~~ 15 (539)
|||- -.|+||.|-+
T Consensus 9 ggcpwgqncypegcsgpk 26 (27)
T d1ansa_ 9 GGCPWGQNCYPEGCSGPK 26 (27)
T ss_dssp TTCSSSCSSCSSCSSSSC
T ss_pred cCCccccccccCcccCCC
Confidence 6664 4688998864
No 9
>d2fd6u3 g.7.1.3 (U:92-188) Urokinase plasminogen activator surface receptor, UPAR {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.40 E-value=1.8e+02 Score=23.02 Aligned_cols=20 Identities=40% Similarity=0.797 Sum_probs=12.0
Q ss_pred ccCCCCCCcCccccccccCC
Q 009238 189 VDEGSGKDEGLLDNCGIIPS 208 (539)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~ 208 (539)
.-|.+-++|+.+.-||.||.
T Consensus 42 ~~e~~~~de~~~rGCg~lpg 61 (97)
T d2fd6u3 42 GEEGRPKDDRHLRGCGYLPG 61 (97)
T ss_dssp -------CCSEEEEEEECTT
T ss_pred cccCCcccccccccCCCCCC
Confidence 34455779999999999994
No 10
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.35 E-value=1.7e+02 Score=21.18 Aligned_cols=22 Identities=36% Similarity=0.830 Sum_probs=19.0
Q ss_pred CCcCccccccccCCCCcccccc
Q 009238 195 KDEGLLDNCGIIPSNCLPCLAS 216 (539)
Q Consensus 195 ~~~~~~~~~~~~~~~cl~~~~~ 216 (539)
-.||+..-||.-.--|-|||-+
T Consensus 20 ~GeGV~~pCg~~~T~CepCld~ 41 (55)
T d1sg1x1 20 LGEGVAQPCGANQTVCEPCLDN 41 (55)
T ss_dssp TTEEEEECSSSSSCEEEECCTT
T ss_pred CCCceeeccCCCCceeeeccCC
Confidence 3689999999988889999983
Done!