Your job contains 1 sequence.
>009239
MEEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRH
PPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGK
SSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPK
RIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERL
ESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPES
EPHEGETYNVHYYLDNEHILDKVREYPGRARERILDSMLSRKRKLFPMKVSVDDCNADLR
DYLRKRRVVDGHSIVHSTRRHESSRLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGT
LPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFTGPK
SLAEIREEKKKAEESGGHFGKVGHLSRTLTDFQGPKPLSEILKEKRRPGTVSDADTWSC
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009239
(539 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2051683 - symbol:AT2G02160 species:3702 "Arabi... 446 7.8e-42 1
UNIPROTKB|H9KVA5 - symbol:CPSF4L "Putative cleavage and p... 117 3.1e-06 1
UNIPROTKB|F1LX98 - symbol:F1LX98 "Uncharacterized protein... 131 6.0e-06 2
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 122 2.3e-05 1
RGD|1308290 - symbol:Zc3h11a "zinc finger CCCH-type conta... 132 5.2e-05 2
UNIPROTKB|F1NLA7 - symbol:ZC3H11A "Zinc finger CCCH domai... 130 5.3e-05 2
UNIPROTKB|Q5ZJJ1 - symbol:ZC3H11A "Zinc finger CCCH domai... 130 5.3e-05 2
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 105 6.1e-05 1
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 120 0.00012 1
UNIPROTKB|F6QB05 - symbol:F6QB05 "Uncharacterized protein... 127 0.00019 2
UNIPROTKB|E9PBY7 - symbol:ZC3H11A "Zinc finger CCCH domai... 123 0.00025 1
MGI|MGI:1917829 - symbol:Zc3h11a "zinc finger CCCH type c... 124 0.00035 1
UNIPROTKB|E9PQ61 - symbol:ZC3H11A "Zinc finger CCCH domai... 123 0.00037 2
UNIPROTKB|J9P070 - symbol:ZC3H11A "Uncharacterized protei... 127 0.00038 2
UNIPROTKB|E2RJJ0 - symbol:ZC3H11A "Uncharacterized protei... 127 0.00038 2
UNIPROTKB|F1REX3 - symbol:LOC100518830 "Uncharacterized p... 116 0.00045 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 115 0.00045 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 114 0.00058 1
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 114 0.00058 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 114 0.00058 1
UNIPROTKB|I3LT52 - symbol:ZC3H11A "Uncharacterized protei... 127 0.00061 2
UNIPROTKB|O75152 - symbol:ZC3H11A "Zinc finger CCCH domai... 123 0.00063 2
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 114 0.00075 1
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 114 0.00075 1
UNIPROTKB|Q66KE3 - symbol:cpsf4 "Cleavage and polyadenyla... 114 0.00075 1
UNIPROTKB|Q6DJP7 - symbol:cpsf4 "Cleavage and polyadenyla... 114 0.00075 1
>TAIR|locus:2051683 [details] [associations]
symbol:AT2G02160 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 PROSITE:PS50103
SMART:SM00356 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005936 EMBL:AY059770
EMBL:AY099878 EMBL:BT000894 IPI:IPI00519822 PIR:F84433
RefSeq:NP_027420.1 UniGene:At.22554 UniGene:At.72504
ProteinModelPortal:Q9ZUM0 SMR:Q9ZUM0 PaxDb:Q9ZUM0 PRIDE:Q9ZUM0
EnsemblPlants:AT2G02160.1 GeneID:814747 KEGG:ath:AT2G02160
TAIR:At2g02160 eggNOG:NOG280895 HOGENOM:HOG000239634
InParanoid:Q9ZUM0 OMA:YPVEDYE PhylomeDB:Q9ZUM0
ProtClustDB:CLSN2717829 Genevestigator:Q9ZUM0 Uniprot:Q9ZUM0
Length = 669
Score = 446 (162.1 bits), Expect = 7.8e-42, P = 7.8e-42
Identities = 167/545 (30%), Positives = 236/545 (43%)
Query: 2 EEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHP 61
EE+ K NTDCVYFLASPLTCKKG +CEYRH+E AR+NPRDC+YWL GNC+NP+CGFRHP
Sbjct: 25 EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84
Query: 62 PLDAHVTE---APSESVS-LPCQSSIP-VNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIA 116
PL+ + AP+ SV + + P V K +PC F+ G C +GD CSFLH P+ A
Sbjct: 85 PLEGLLGNQGGAPAVSVQPIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPAA 144
Query: 117 PNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQ 176
+ A TD S+ P ++ N S+ +K D+ P+ +
Sbjct: 145 YKKQHPVEAKPATDPQCSKKPIENNTEEKKLP-DV--NLSKV-VKGHTDISAAPR---VA 197
Query: 177 SAPKRIPERRASPQISLSEG-ETVAVVKSDSMVA-AEGFMKTKSHLYTDWSSDEHADDH- 233
S R R I G E V K + EG T+ L + SD++ H
Sbjct: 198 STGLR-DSRSVEGYIPNHVGYEPVVQRKGPGFPSFTEGGHSTQ--LLQKYGSDDNNSFHN 254
Query: 234 -VEPEERL-ESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGY-DFEGP 290
+ ++ L ESSPGFDVLVDNE +D + R + E + F D +
Sbjct: 255 GKDADDVLRESSPGFDVLVDNEAGDSEYYHVEDRYGRRSQERGNSEYDPDFSAIADGDKE 314
Query: 291 IEYDPMYPESEPHEGETYNVHYYLDNEHI--LDKVREYPGRAR-ERILDS----MLSRKR 343
+ + + E + H + +E LD+ R Y R E IL+S L+++R
Sbjct: 315 ALREQRFDSYDRREDRGWG-HRRVSSEREDRLDR-RVYAEDERSENILESDLRYRLAKQR 372
Query: 344 KLFPMKVSVDDCNADLRDYLRKRRVVD-GHSIVHSTRRHESSRLMXXXXXXXXXXXXXXX 402
K M++SV DY +D G+ +RR
Sbjct: 373 KGNGMRLSVGG-----HDYAAPDSSMDRGY---RESRRDTPRENSISSSRLQGRIKLRER 424
Query: 403 XASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKP 462
E G ++ + +G + G R L ++H G + +R R+
Sbjct: 425 SNGEEGHHF-DRRSERGRDRSELPSQGRLRDRIKGRLEENHSGNQ--ERGFGAPWARRRE 481
Query: 463 FSSERRSSQTETAFTGPKSLAEIRXXXXXXXXSGGHFGKVGHLSRTLTD-FQGPKPLSEI 521
ER+S+ PKS E F + H + D F P P SEI
Sbjct: 482 MEDERKSA--------PKSSRE-ESKPEPSLGKRKSFEEDHHSHKRSRDSFAAPLPFSEI 532
Query: 522 LKEKR 526
LK K+
Sbjct: 533 LKRKK 537
>UNIPROTKB|H9KVA5 [details] [associations]
symbol:CPSF4L "Putative cleavage and
polyadenylation-specificity factor subunit 4-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC087301 HGNC:HGNC:33632
ProteinModelPortal:H9KVA5 SMR:H9KVA5 PRIDE:H9KVA5
Ensembl:ENST00000397671 Bgee:H9KVA5 Uniprot:H9KVA5
Length = 152
Score = 117 (46.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 31/105 (29%), Positives = 49/105 (46%)
Query: 12 CVYFLASPLTCKKGLDCEYRHN-EIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTE 69
C ++L CKKG C++ H ++ R+ P +C+++ G+C N C F H +
Sbjct: 4 CKHWLRG--LCKKGDHCKFLHQYDLTRM-P-ECYFYSKFGDCSNKECSFLHVKPAFKSQD 59
Query: 70 APSESVSLPCQSSIPVNK-TSIP---CYFYFNGFCSRGDRCSFLH 110
P C+ + P+ K +P C Y GFC G +C F H
Sbjct: 60 CPWYDQGF-CKDAGPLCKYRHVPRIMCLNYLVGFCPEGPKCQFAH 103
>UNIPROTKB|F1LX98 [details] [associations]
symbol:F1LX98 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 IPI:IPI00778688 Ensembl:ENSRNOT00000056458
OMA:RCFRNIC Uniprot:F1LX98
Length = 710
Score = 131 (51.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 42/150 (28%), Positives = 62/150 (41%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC ++ S TC KG C +RH E A N C W G+C C FRH +D
Sbjct: 1 IPNQGEDCYFYFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGHCFRQVCKFRHMEID 58
Query: 65 AHVTEAPSESVSLPCQ-SSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
+E +PC + P+ + C F+ N SR FL + P S+
Sbjct: 59 KKRSE-------IPCYWENQPMGCQKLNCTFHHNR--SRYVDGLFLLPSKTVLPTVPESQ 109
Query: 124 SASAVTDSL-LSENKTSAGDGTGSPPTEIR 152
T L + +NK S +P ++R
Sbjct: 110 EEEVKTGQLTVQQNKLSV---QSNPSPQLR 136
Score = 55 (24.4 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 34/143 (23%), Positives = 54/143 (37%)
Query: 166 VRVQPKGHLLQSAPKRIPERRA----SPQISLSEGETVAVVKSDSMVAAEGFM---KTKS 218
V V+P + SAPK P+R+A S I+ + + + VA + K+ +
Sbjct: 560 VNVKPSVVKVVSAPKLAPKRKAVEVHSAVIAAVKPLSSRKAAKKAAVAVVPLLSEDKSVT 619
Query: 219 HLYTDWSSDEHADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHREL 278
T+ D A EP S P + R +LG + LL+ + +L
Sbjct: 620 MSETEKPKDSSAQPSSEPLLPEGSGPSSSQMETKPRRLSSLG---TGKPLLSVEDDFEKL 676
Query: 279 NGHFLGYDFEGPIEYDPMYPESE 301
G E I+ DP E +
Sbjct: 677 IWEISGGKLEAEIDLDPGKDEDD 699
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 41/174 (23%), Positives = 64/174 (36%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 15 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 71
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSAS 126
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 72 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQPPL 128
Query: 127 AVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPK 180
++ +T G N PL+ + KGH K
Sbjct: 129 PQQTQPPAKQRTPQVIGVMQSQNSSAGNRGPRPLEQVTCYKCGEKGHYANRCTK 182
>RGD|1308290 [details] [associations]
symbol:Zc3h11a "zinc finger CCCH-type containing 11A"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 RGD:1308290
GO:GO:0008270 GO:GO:0003676 CTD:9877 eggNOG:NOG306637
HOGENOM:HOG000285991 HOVERGEN:HBG082979
GeneTree:ENSGT00690000102188 EMBL:DQ480752 IPI:IPI00363838
RefSeq:NP_001041367.1 UniGene:Rn.73695 Ensembl:ENSRNOT00000004025
GeneID:360845 KEGG:rno:360845 UCSC:RGD:1308290 InParanoid:Q0ZFS5
OMA:QPATETH NextBio:674334 Genevestigator:Q0ZFS5 Uniprot:Q0ZFS5
Length = 793
Score = 132 (51.5 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 40/137 (29%), Positives = 56/137 (40%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC ++ S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFYFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPSESVSLPCQ-SSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
+E +PC + P+ + C F+ N SR FL + P S+
Sbjct: 59 KKRSE-------IPCYWENQPMGCQKLNCAFHHNR--SRYVDGLFLPPSKTVLPTVPESQ 109
Query: 124 SASAVTDSLL-SENKTS 139
T L+ +NK S
Sbjct: 110 EEEVKTSQLMVQQNKLS 126
Score = 46 (21.3 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 166 VRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVK--SDSMVAAEGFMKTKSHLYTD 223
V V+P + SAPK P+R+A + + +A VK S S V E K +
Sbjct: 634 VNVKPSVVKVVSAPKLAPKRKA---VEVHSA-VIAAVKPLSSSSVLQESPAKKAAVAVGP 689
Query: 224 WSSDEHADDHVEPEERLESS 243
S++ + E E+ +SS
Sbjct: 690 LLSEDKSVTMSETEKPKDSS 709
Score = 45 (20.9 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 15/75 (20%), Positives = 31/75 (41%)
Query: 122 SKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKR 181
+K A+ LLSE+K+ T P + ++A + + P + + P+R
Sbjct: 680 AKKAAVAVGPLLSEDKSVTMSETEKPKDSSALSSAQASSEPLLPEGSGPSSSQMATKPRR 739
Query: 182 IPERRAS-PQISLSE 195
+ P +S+ +
Sbjct: 740 LSSASTGKPPLSVED 754
>UNIPROTKB|F1NLA7 [details] [associations]
symbol:ZC3H11A "Zinc finger CCCH domain-containing protein
11A" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 IPI:IPI00585717 OMA:ITRHLTK
GeneTree:ENSGT00690000102188 EMBL:AADN02063998 EMBL:AADN02063997
Ensembl:ENSGALT00000000748 Uniprot:F1NLA7
Length = 723
Score = 130 (50.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 29/80 (36%), Positives = 38/80 (47%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ K+ DC ++ S TC KG +C +RH E A N C W G C C FRH +D
Sbjct: 1 MSKQGDDCYFYFYS--TCNKGDNCPFRHCEAALGNETICTLWKEGRCFRNVCRFRHMEID 58
Query: 65 AHVTEAPSESVSLP--CQSS 82
+E P + P CQ S
Sbjct: 59 KKRSEIPCFWENQPGGCQKS 78
Score = 47 (21.6 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 153 PNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAE 211
P+ +E +K V V+P + KR +R+A+ +IS S VA VK S E
Sbjct: 550 PSATEETVKAKCKVCVKPSDSKASTPTKRALKRKAA-EISPS---AVAAVKPLSSTETE 604
>UNIPROTKB|Q5ZJJ1 [details] [associations]
symbol:ZC3H11A "Zinc finger CCCH domain-containing protein
11A" species:9031 "Gallus gallus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AJ720443 IPI:IPI00585717
RefSeq:NP_001026201.1 UniGene:Gga.7680 ProteinModelPortal:Q5ZJJ1
STRING:Q5ZJJ1 GeneID:421172 KEGG:gga:421172 CTD:9877
eggNOG:NOG306637 HOGENOM:HOG000285991 HOVERGEN:HBG082979
InParanoid:Q5ZJJ1 OrthoDB:EOG4HQDJF NextBio:20823985 Uniprot:Q5ZJJ1
Length = 723
Score = 130 (50.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 29/80 (36%), Positives = 38/80 (47%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ K+ DC ++ S TC KG +C +RH E A N C W G C C FRH +D
Sbjct: 1 MSKQGDDCYFYFYS--TCNKGDNCPFRHCEAALGNETICTLWKEGRCFRNVCRFRHMEID 58
Query: 65 AHVTEAPSESVSLP--CQSS 82
+E P + P CQ S
Sbjct: 59 KKRSEIPCFWENQPGGCQKS 78
Score = 47 (21.6 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 153 PNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAE 211
P+ +E +K V V+P + KR +R+A+ +IS S VA VK S E
Sbjct: 550 PSATEETVKAKCKVCVKPSDSKASTPTKRALKRKAA-EISPS---AVAAVKPLSSTETE 604
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 105 (42.0 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 28/103 (27%), Positives = 44/103 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 15 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 71
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFL 109
P C+ P+ + + C Y GFC G C F+
Sbjct: 72 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFM 112
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 41/174 (23%), Positives = 65/174 (37%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSAS 126
P C+ P+ + + C Y GFC G C F+H P P G +++
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPTCKFMH-PRFELPMG-TTEQPP 180
Query: 127 AVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPK 180
+ + +T G N PL+ + KGH K
Sbjct: 181 LPQPAQTQQKRTPQVIGVMQSQNNNTGNRGPRPLEQVTCYKCGEKGHYANRCTK 234
>UNIPROTKB|F6QB05 [details] [associations]
symbol:F6QB05 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676
OMA:ITRHLTK GeneTree:ENSGT00690000102188 EMBL:DAAA02041907
EMBL:DAAA02041908 IPI:IPI00759447 Ensembl:ENSBTAT00000023068
Uniprot:F6QB05
Length = 817
Score = 127 (49.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ + CQ
Sbjct: 59 KKRSEIPCYWENQPMGCQ 76
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 139 SAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIPERRA 187
++G G + P E K V V+P + S+PK P+R+A
Sbjct: 631 TSGIGDSILNVKCATQPLEKRSKAKPKVNVKPSVVKVVSSPKLAPKRKA 679
>UNIPROTKB|E9PBY7 [details] [associations]
symbol:ZC3H11A "Zinc finger CCCH domain-containing protein
11A" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC114402 HGNC:HGNC:29093 ChiTaRS:ZC3H11A
IPI:IPI00953423 ProteinModelPortal:E9PBY7 SMR:E9PBY7 PRIDE:E9PBY7
Ensembl:ENST00000453771 ArrayExpress:E9PBY7 Bgee:E9PBY7
Uniprot:E9PBY7
Length = 515
Score = 123 (48.4 bits), Expect = 0.00025, P = 0.00025
Identities = 28/78 (35%), Positives = 35/78 (44%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ CQ
Sbjct: 59 KKRSEIPCYWENQPTGCQ 76
>MGI|MGI:1917829 [details] [associations]
symbol:Zc3h11a "zinc finger CCCH type containing 11A"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 MGI:MGI:1917829
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 UniGene:Mm.245357
CTD:9877 eggNOG:NOG306637 HOGENOM:HOG000285991 HOVERGEN:HBG082979
OrthoDB:EOG4HQDJF OMA:ITRHLTK ChiTaRS:ZC3H11A EMBL:BC066163
EMBL:BC005786 EMBL:BC066848 EMBL:BC058552 EMBL:AK122341
EMBL:AK078105 IPI:IPI00421162 RefSeq:NP_653113.4
ProteinModelPortal:Q6NZF1 SMR:Q6NZF1 STRING:Q6NZF1
PhosphoSite:Q6NZF1 PaxDb:Q6NZF1 PRIDE:Q6NZF1
Ensembl:ENSMUST00000027736 GeneID:70579 KEGG:mmu:70579
GeneTree:ENSGT00690000102188 InParanoid:Q6NZF1 NextBio:331916
CleanEx:MM_ZC3H11A Genevestigator:Q6NZF1
GermOnline:ENSMUSG00000026464 Uniprot:Q6NZF1
Length = 792
Score = 124 (48.7 bits), Expect = 0.00035, P = 0.00035
Identities = 41/150 (27%), Positives = 60/150 (40%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC ++ S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFYFYS--TCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPSESVSLPCQ-SSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
+E +PC + PV + C F+ SR FL + P S+
Sbjct: 59 KKRSE-------IPCYWENQPVGCQKLNCAFHHTR--SRYVDGLFLPPSKTVLPTVPESQ 109
Query: 124 SASAVTDSL-LSENKTSAGDGTGSPPTEIR 152
T L + ++K S +P ++R
Sbjct: 110 EEEVKTSQLTVQQSKLSV---QSNPSPQLR 136
>UNIPROTKB|E9PQ61 [details] [associations]
symbol:ZC3H11A "Zinc finger CCCH domain-containing protein
11A" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 EMBL:AC114402 HGNC:HGNC:29093 ChiTaRS:ZC3H11A
IPI:IPI01014067 ProteinModelPortal:E9PQ61 SMR:E9PQ61 PRIDE:E9PQ61
Ensembl:ENST00000495527 ArrayExpress:E9PQ61 Bgee:E9PQ61
Uniprot:E9PQ61
Length = 652
Score = 123 (48.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 28/78 (35%), Positives = 35/78 (44%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ CQ
Sbjct: 59 KKRSEIPCYWENQPTGCQ 76
Score = 45 (20.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 29/147 (19%), Positives = 49/147 (33%)
Query: 116 APNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPL---KLAVDVRVQPKG 172
A KS K + + + SE K + PP SE P K +V ++
Sbjct: 420 AERQKSKKDTTCIKLKIDSEIKKTVV----LPPIVASRGQSEEPAGKTKSMQEVHIKTLE 475
Query: 173 HLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADD 232
+ R+ + S S S+ E + + MK + +L D +
Sbjct: 476 EIKLEKALRVQQSSESSTSSPSQHEATPGARRLLRITKRTGMKEEKNLQEGNEVDSQSSI 535
Query: 233 HVEPEERLESSPGFDVLVDNENRAENL 259
E +E + G D+ R E +
Sbjct: 536 RTEAKEASGETTGVDITKIQVKRCETM 562
>UNIPROTKB|J9P070 [details] [associations]
symbol:ZC3H11A "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 CTD:9877 GeneTree:ENSGT00690000102188
EMBL:AAEX03018221 RefSeq:XP_536091.2 Ensembl:ENSCAFT00000049169
GeneID:478932 KEGG:cfa:478932 Uniprot:J9P070
Length = 815
Score = 127 (49.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ + CQ
Sbjct: 59 KKRSEIPCYWENQPMGCQ 76
Score = 43 (20.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 166 VRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKT 216
V V+P + S+PK P+R+A ++ + V + S SM+ KT
Sbjct: 656 VNVKPSVVKVVSSPKLAPKRKAV-EVHPAVIAAVKPLSSSSMLQESPTKKT 705
Score = 42 (19.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 340 SRKRK--LFPMKVSVDDCNADLRD 361
S+K K L P++ VD CN + +
Sbjct: 576 SQKEKSVLTPLRGDVDSCNTQIAE 599
>UNIPROTKB|E2RJJ0 [details] [associations]
symbol:ZC3H11A "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 OMA:ITRHLTK GeneTree:ENSGT00690000102188
EMBL:AAEX03018221 Ensembl:ENSCAFT00000015260 Uniprot:E2RJJ0
Length = 816
Score = 127 (49.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ + CQ
Sbjct: 59 KKRSEIPCYWENQPMGCQ 76
Score = 43 (20.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 166 VRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKT 216
V V+P + S+PK P+R+A ++ + V + S SM+ KT
Sbjct: 657 VNVKPSVVKVVSSPKLAPKRKAV-EVHPAVIAAVKPLSSSSMLQESPTKKT 706
Score = 42 (19.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 340 SRKRK--LFPMKVSVDDCNADLRD 361
S+K K L P++ VD CN + +
Sbjct: 577 SQKEKSVLTPLRGDVDSCNTQIAE 600
>UNIPROTKB|F1REX3 [details] [associations]
symbol:LOC100518830 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 KO:K14404 EMBL:FP102617
RefSeq:XP_003124350.1 Ensembl:ENSSSCT00000008355 GeneID:100518830
KEGG:ssc:100518830 OMA:MQDIVAS Uniprot:F1REX3
Length = 269
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00045
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDARF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV---NKTS-IPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ +T + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRRTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 42 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 98
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 99 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 152
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|I3LT52 [details] [associations]
symbol:ZC3H11A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0008270 GO:GO:0003676 CTD:9877
OMA:ITRHLTK GeneTree:ENSGT00690000102188 EMBL:FP312914
RefSeq:XP_003357426.1 RefSeq:XP_003357427.1 UniGene:Ssc.3337
Ensembl:ENSSSCT00000027953 GeneID:100622147 KEGG:ssc:100622147
Uniprot:I3LT52
Length = 816
Score = 127 (49.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 28/78 (35%), Positives = 36/78 (46%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ + CQ
Sbjct: 59 KKRSEIPCYWENQPMGCQ 76
Score = 41 (19.5 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 166 VRVQPKGHLLQSAPKRIPERRAS 188
V V+P + S+PK P+R+A+
Sbjct: 657 VNVKPSVVKVVSSPKLAPKRKAA 679
>UNIPROTKB|O75152 [details] [associations]
symbol:ZC3H11A "Zinc finger CCCH domain-containing protein
11A" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000571
PROSITE:PS50103 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 CTD:9877 eggNOG:NOG306637 HOVERGEN:HBG082979
OrthoDB:EOG4HQDJF EMBL:AB014563 EMBL:CR627439 EMBL:CR627446
EMBL:BX648271 EMBL:BX649148 EMBL:BC014268 IPI:IPI00328306
PIR:T00368 RefSeq:NP_055642.3 UniGene:Hs.532399
ProteinModelPortal:O75152 SMR:O75152 IntAct:O75152
MINT:MINT-1444822 STRING:O75152 PhosphoSite:O75152 PaxDb:O75152
PRIDE:O75152 Ensembl:ENST00000332127 Ensembl:ENST00000367210
Ensembl:ENST00000367212 Ensembl:ENST00000367214
Ensembl:ENST00000545588 GeneID:9877 KEGG:hsa:9877 UCSC:uc001hac.3
GeneCards:GC01P203765 H-InvDB:HIX0123107 HGNC:HGNC:29093
HPA:HPA026439 HPA:HPA028490 HPA:HPA028526 MIM:613513
neXtProt:NX_O75152 PharmGKB:PA142670535 InParanoid:O75152
OMA:ITRHLTK ChiTaRS:ZC3H11A GenomeRNAi:9877 NextBio:37225
ArrayExpress:O75152 Bgee:O75152 CleanEx:HS_ZC3H11A
Genevestigator:O75152 GermOnline:ENSG00000058673 Uniprot:O75152
Length = 810
Score = 123 (48.4 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 28/78 (35%), Positives = 35/78 (44%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ + DC +F S TC KG C +RH E A N C W G C C FRH +D
Sbjct: 1 MPNQGEDCYFFFYS--TCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEID 58
Query: 65 AHVTEAPS--ESVSLPCQ 80
+E P E+ CQ
Sbjct: 59 KKRSEIPCYWENQPTGCQ 76
Score = 45 (20.9 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 29/147 (19%), Positives = 49/147 (33%)
Query: 116 APNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPL---KLAVDVRVQPKG 172
A KS K + + + SE K + PP SE P K +V ++
Sbjct: 420 AERQKSKKDTTCIKLKIDSEIKKTVV----LPPIVASRGQSEEPAGKTKSMQEVHIKTLE 475
Query: 173 HLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADD 232
+ R+ + S S S+ E + + MK + +L D +
Sbjct: 476 EIKLEKALRVQQSSESSTSSPSQHEATPGARRLLRITKRTGMKEEKNLQEGNEVDSQSSI 535
Query: 233 HVEPEERLESSPGFDVLVDNENRAENL 259
E +E + G D+ R E +
Sbjct: 536 RTEAKEASGETTGVDITKIQVKRCETM 562
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 114 (45.2 bits), Expect = 0.00075, P = 0.00075
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 114 (45.2 bits), Expect = 0.00075, P = 0.00075
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|Q66KE3 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
eggNOG:COG5084 GO:GO:0042462 GO:GO:0005847 HOVERGEN:HBG051108
CTD:10898 KO:K14404 OrthoDB:EOG4KH2VQ EMBL:BC080440
RefSeq:NP_001007933.1 UniGene:Str.3196 ProteinModelPortal:Q66KE3
SMR:Q66KE3 STRING:Q66KE3 GeneID:493312 KEGG:xtr:493312
Xenbase:XB-GENE-948302 InParanoid:Q66KE3 Bgee:Q66KE3 Uniprot:Q66KE3
Length = 269
Score = 114 (45.2 bits), Expect = 0.00075, P = 0.00075
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCIEGPNCKFMH-PRFELPMGTTEQ 178
>UNIPROTKB|Q6DJP7 [details] [associations]
symbol:cpsf4 "Cleavage and polyadenylation specificity
factor subunit 4" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0005847
HOVERGEN:HBG051108 CTD:10898 KO:K14404 EMBL:BC075128
RefSeq:NP_001086337.1 UniGene:Xl.25683 ProteinModelPortal:Q6DJP7
SMR:Q6DJP7 GeneID:444766 KEGG:xla:444766 Xenbase:XB-GENE-948308
Uniprot:Q6DJP7
Length = 269
Score = 114 (45.2 bits), Expect = 0.00075, P = 0.00075
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLDAHVTEA 70
C ++L CKKG CE+ H P +C+++ G C N C F H ++ + +
Sbjct: 68 CKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPESKIKDC 124
Query: 71 PSESVSLPCQSSIPV----NKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSK 123
P C+ P+ + + C Y GFC G C F+H P P G + +
Sbjct: 125 PWYDRGF-CKHG-PLCRHRHTRRVICVNYLVGFCIEGPNCKFMH-PRFELPMGTAEQ 178
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 539 515 0.00088 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 617 (66 KB)
Total size of DFA: 330 KB (2166 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.32u 0.14s 52.46t Elapsed: 00:00:02
Total cpu time: 52.32u 0.14s 52.46t Elapsed: 00:00:02
Start: Tue May 21 11:03:36 2013 End: Tue May 21 11:03:38 2013