BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009239
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AT25|C3H34_ORYSJ Zinc finger CCCH domain-containing protein 34 OS=Oryza sativa
subsp. japonica GN=Os05g0176400 PE=2 SV=1
Length = 493
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 170/546 (31%), Positives = 245/546 (44%), Gaps = 101/546 (18%)
Query: 9 NTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPL-DAHV 67
NTDCVYFLASP TC KG CEYRH + AR N R+CWYW GNC+NP C FRHPPL + +
Sbjct: 17 NTDCVYFLASPFTCTKGSKCEYRHADGARFNRRNCWYWFKGNCVNPSCTFRHPPLENLNK 76
Query: 68 TEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGP----DGIAPNGKSSK 123
T++ ++ +SL C +S+ K + PCYFY+N CS+GD C +LH P D + + K++
Sbjct: 77 TKSLADPLSL-CSTSV---KAANPCYFYYNSHCSKGDNCPYLHEPLTSNDAVGTSCKATT 132
Query: 124 SASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLLQSAPKRIP 183
S AV+ S + + T + P Q ++ P I
Sbjct: 133 SNPAVSKSYVGDEMVEESKDTITNP-------------------CQDTSCHIKEVPVSI- 172
Query: 184 ERRASPQISLSEGETVAVVKSDSMVAAEGFMKTKSHLYTDWSSDEHADDHVEPEERLESS 243
+P+ +E + A+ S + + +MK + +D +S + DH E +ER +SS
Sbjct: 173 ----NPEFGEAEAVSGALETSTDI---DEYMKCSA--VSDLNSGDSTMDHTEQDER-DSS 222
Query: 244 PGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNGHFLGYDFEGPIEYDPMYPESEPH 303
PGFDVLVD + L + D E+ L T +++ L+ Y P+ YD Y H
Sbjct: 223 PGFDVLVD-----DCLSNKSDLEHQLTTESDNKVLHAE---YGIRDPVLYDMYY-----H 269
Query: 304 EGETYNVHYYLDNEHILDKVREY-----PGRARERILDSMLSRKRKLFPMKVSVDDCNAD 358
+ E YN Y LD + Y P A E + L L P V D
Sbjct: 270 DPEYYN---YEPEFCGLDDRQGYLYLCQPNGAHEHESEITLGH---LLPQNTEVTSDEYD 323
Query: 359 LRDYLRKRRVVDGHSIVHSTRRHESSRLMGR--------IQGRHRGLLLHGRLASEFGKN 410
R + R + + +H R + + +G+ + L +
Sbjct: 324 RR-FFNPRNFTSSVADTNFVHQHTQIRHISKRRPENRKGAKGKKDCIKRSRCLEPKNSTQ 382
Query: 411 YIESHGHK-------GTLPNGANQHGWARHSKSNILRQHHKGKRLLKRKSHLSAISRKPF 463
IES + G P AN + K N +Q H LSA
Sbjct: 383 QIESMPTRQRKDYLMGECPQPANHATFRGRRKKNRGKQQHV----------LSA------ 426
Query: 464 SSERRSSQTETA-FTGPKSLAEIREEKKKAEESGGHFGKVGHLSRTLT-DFQGPKPLSEI 521
+SS+ TA FTGPK+LA+I+EEK K+ S H R+ + DF+GPK L+E+
Sbjct: 427 ----KSSEHPTADFTGPKTLAQIKEEKCKSNSSFSHSTACTPNVRSFSDDFEGPKSLTEL 482
Query: 522 LKEKRR 527
L K R
Sbjct: 483 LMTKSR 488
>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 19 OS=Oryza sativa
subsp. japonica GN=Os02g0831100 PE=2 SV=2
Length = 647
Score = 177 bits (450), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 171/583 (29%), Positives = 246/583 (42%), Gaps = 136/583 (23%)
Query: 2 EEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHP 61
EE ++R+TDC+YFLASPLTCKKG +CEYRH++ AR+NPRDCWYW GNC NP+C FRHP
Sbjct: 12 EEARRRRSTDCIYFLASPLTCKKGSECEYRHSDAARMNPRDCWYWFNGNCANPKCSFRHP 71
Query: 62 PLDAHV--------TEAPSESVSLPCQSSIP-----VNKTSIPCYFYFNGFCSRGDRCSF 108
PLD V ++ + VS+P Q+ +P K +PCY++ G C +GDRC+F
Sbjct: 72 PLDGLVGAPTTPRTSQQSAPQVSVPAQAPVPNPASGTAKQGVPCYYFQKGMCVKGDRCAF 131
Query: 109 LHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPN---PSEAPLKLAVD 165
LH P TGSP + P+ P +
Sbjct: 132 LHLPQA-----------------------------TGSPAPQHTTKVFAPASVPHPQLKN 162
Query: 166 VRVQPKGHLLQSAPKRIPERRASPQISLSEGETVAVVKSDSMVA-AEGFMKTKSHLYTDW 224
+P Q+AP I ++ P+ S G+T + + G + K Y
Sbjct: 163 SWTKPNSSAQQNAPPAIFDK---PKDSAHNGKTAQKQNLTNRAGHSSGIIHDKKGSYMPS 219
Query: 225 -----------SSDEHADDHVEPEERL-ESSPGFDVLVDNENRAENLGFEDDSEYLLATN 272
+ D+ A++ VE E + E SPG DVL G +D++E L +
Sbjct: 220 GVTKNYRPPPSTGDDLAENGVEMGEFVREPSPGSDVLTG--------GADDNTEQSLRED 271
Query: 273 R-EHRELNGHFLGYDFEGPIEYDPMYPESEPHEGETYNVHYYLDNEHILDKVREYPGRAR 331
R +R NG E H G H E R + G A
Sbjct: 272 RGAYRRTNG--------------------EQHIGMLRQTHDSYGFE------RSHRGSAE 305
Query: 332 ERILDSMLSRKRKLFPMKVSVDDCNADLRDYLRKRR---------VVDGHSIVHSTRRHE 382
+ + +S S++ PM ++ D ++DLR L K+R V D H++ RH+
Sbjct: 306 KLLSESRFSQRE---PMPLTAD--SSDLRQRLLKQRRLNNPRSGQVSDRHNVYPEDERHD 360
Query: 383 SSRLMGRIQGRHRGL---LLHGRL----ASEFGKNYIESHGHKGTLPNGANQHGWARHSK 435
R G Q + G+ L GR+ + F + ++ + P AR S
Sbjct: 361 RHRQRGEEQASNDGVSSSRLRGRIRLPAETTFDRLGLQPEKERDRGPR-------ARLSP 413
Query: 436 SNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETA-FTGPKSLAEIREEKKKA-- 492
+ K LK K + S + + E+ F GPKSLAE++ +K
Sbjct: 414 PSQTDLRGKLHDRLKAKPNEDVSGNVQSSLSKANEDAESLNFAGPKSLAELKAKKVAGSL 473
Query: 493 -EESGGHFGKVGHLSRTLTD--------FQGPKPLSEILKEKR 526
+ S G V S +T F GPKPL+ ILK KR
Sbjct: 474 MKSSRSLTGPVRMTSEIVTIKDSSDPVLFDGPKPLNAILKRKR 516
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17 OS=Arabidopsis
thaliana GN=At2g02160 PE=1 SV=1
Length = 669
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 183/574 (31%), Positives = 248/574 (43%), Gaps = 110/574 (19%)
Query: 2 EEELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHP 61
EE+ K NTDCVYFLASPLTCKKG +CEYRH+E AR+NPRDC+YWL GNC+NP+CGFRHP
Sbjct: 25 EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84
Query: 62 PLDAHVTE---APSESVSLPCQSSI---PVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGI 115
PL+ + AP+ SV P ++ V K +PC F+ G C +GD CSFLH P+
Sbjct: 85 PLEGLLGNQGGAPAVSVQ-PIHATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTPNPA 143
Query: 116 APNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAPLKLAVDVRVQPKGHLL 175
A + A TD S+ P E N +E V++ KGH
Sbjct: 144 AYKKQHPVEAKPATDPQCSKK-----------PIE---NNTEEKKLPDVNLSKVVKGHTD 189
Query: 176 QSAPKRIPERRASPQISLSEGETVAVVKSDSMVAAEG-----FMKT--KSHLYTDWSSDE 228
SA R+ S+ EG V + +V +G F + + L + SD+
Sbjct: 190 ISAAPRVASTGLRDSRSV-EGYIPNHVGYEPVVQRKGPGFPSFTEGGHSTQLLQKYGSDD 248
Query: 229 H--------ADDHVEPEERLESSPGFDVLVDNENRAENLGFEDDSEYLLATNREHRELNG 280
+ ADD + ESSPGFDVLVDNE DSEY +R R
Sbjct: 249 NNSFHNGKDADDVLR-----ESSPGFDVLVDNE--------AGDSEYYHVEDRYGRRSQE 295
Query: 281 HFLGYDFEGPIEYDPMYPESEPHEGETYNVHYY-----------------LDNEHILDKV 323
G EYDP + + E + + E LD+
Sbjct: 296 R-------GNSEYDPDFSAIADGDKEALREQRFDSYDRREDRGWGHRRVSSEREDRLDRR 348
Query: 324 REYPGRARERILDS----MLSRKRKLFPMKVSVD-------DCNADLRDYLRKRRVVDGH 372
E IL+S L+++RK M++SV D + D R Y RR
Sbjct: 349 VYAEDERSENILESDLRYRLAKQRKGNGMRLSVGGHDYAAPDSSMD-RGYRESRRDTPRE 407
Query: 373 SIVHSTRRHESSRLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPNGANQHGWAR 432
+ + SSRL GRI+ R R +G F + E + LP+ G R
Sbjct: 408 NSI------SSSRLQGRIKLRERS---NGEEGHHFDRR-SERGRDRSELPS----QGRLR 453
Query: 433 HSKSNILRQHHKGKRLLKRKSHLSAISRKPFSSERRSSQTETAFTGPKSLAEIREEKKKA 492
L ++H G + +R R+ ER+S+ + +S E K+K+
Sbjct: 454 DRIKGRLEENHSGNQ--ERGFGAPWARRREMEDERKSAPKSSR---EESKPEPSLGKRKS 508
Query: 493 EESGGHFGKVGHLSRTLTDFQGPKPLSEILKEKR 526
E H K R+ F P P SEILK K+
Sbjct: 509 FEEDHHSHK-----RSRDSFAAPLPFSEILKRKK 537
>sp|Q5ZJJ1|ZC11A_CHICK Zinc finger CCCH domain-containing protein 11A OS=Gallus gallus
GN=ZC3H11A PE=2 SV=1
Length = 723
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLD 64
+ K+ DC ++ S TC KG +C +RH E A N C W G C C FRH +D
Sbjct: 1 MSKQGDDCYFYFYS--TCNKGDNCPFRHCEAALGNETICTLWKEGRCFRNVCRFRHMEID 58
Query: 65 AHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFN-GFCSRGDRCSFLH 110
+E IPC++ G C + + C+F H
Sbjct: 59 KKRSE--------------------IPCFWENQPGGCQKSN-CAFHH 84
>sp|O75152|ZC11A_HUMAN Zinc finger CCCH domain-containing protein 11A OS=Homo sapiens
GN=ZC3H11A PE=1 SV=3
Length = 810
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 22/100 (22%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEA 70
DC +F S TC KG C +RH E A N C W G C C FRH +D +E
Sbjct: 7 DCYFFFYS--TCTKGDSCPFRHCEAAIGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSE- 63
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLH 110
IPCY+ + C+F H
Sbjct: 64 -------------------IPCYWENQPTGCQKLNCAFHH 84
>sp|Q6NZF1|ZC11A_MOUSE Zinc finger CCCH domain-containing protein 11A OS=Mus musculus
GN=Zc3h11a PE=1 SV=1
Length = 792
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 22/100 (22%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEA 70
DC ++ S TC KG C +RH E A N C W G C C FRH +D +E
Sbjct: 7 DCYFYFYS--TCAKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSE- 63
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLH 110
IPCY+ + C+F H
Sbjct: 64 -------------------IPCYWENQPVGCQKLNCAFHH 84
>sp|Q5REG6|ZC11A_PONAB Zinc finger CCCH domain-containing protein 11A OS=Pongo abelii
GN=ZC3H11A PE=2 SV=1
Length = 811
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 21/100 (21%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEA 70
DC +F TC KG C +RH E A N C W G C C FRH +D +E
Sbjct: 7 DCYFFFFYS-TCTKGDSCPFRHCEAALGNETVCTLWQEGRCFRQVCRFRHMEIDKKRSE- 64
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLH 110
IPCY+ + C+F H
Sbjct: 65 -------------------IPCYWENQPTGCQKLNCAFHH 85
>sp|Q10M00|C3H22_ORYSJ Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa
subsp. japonica GN=Os03g0328900 PE=2 SV=2
Length = 688
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 91 PCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASA 127
PC +Y GFC G C F+HG D A G + +A+A
Sbjct: 238 PCLYYARGFCKNGSSCRFVHGDDAAALTGAAMDAATA 274
>sp|Q8BYK8|ZC3H6_MOUSE Zinc finger CCCH domain-containing protein 6 OS=Mus musculus
GN=Zc3h6 PE=2 SV=2
Length = 1177
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 36/101 (35%), Gaps = 31/101 (30%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEA 70
C YFL C KG C++ H+ C Y+L G C C + H
Sbjct: 276 CKYFLEG--RCIKGDHCKFNHDAELEKKKEVCKYYLQGYCTKGENCIYMH---------- 323
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGF-CSRGDRCSFLH 110
+ PC FY +G C +GD+C F H
Sbjct: 324 -----------------SEFPCKFYHSGAKCYQGDKCKFSH 347
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus
GN=Zc3h4 PE=1 SV=2
Length = 1304
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 22/70 (31%)
Query: 43 CWYWLAGNCI-NPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCS 101
C Y++ G C C F H + LP + + C FY GFC+
Sbjct: 395 CKYFVEGRCTWGDHCNFSH-------------DIELPKKREL--------CKFYITGFCA 433
Query: 102 RGDRCSFLHG 111
R + C ++HG
Sbjct: 434 RAENCPYMHG 443
>sp|Q9UPT8|ZC3H4_HUMAN Zinc finger CCCH domain-containing protein 4 OS=Homo sapiens
GN=ZC3H4 PE=1 SV=3
Length = 1303
Score = 40.4 bits (93), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 22/70 (31%)
Query: 43 CWYWLAGNCI-NPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCS 101
C Y++ G C C F H + LP + + C FY GFC+
Sbjct: 396 CKYFVEGRCTWGDHCNFSH-------------DIELPKKREL--------CKFYITGFCA 434
Query: 102 RGDRCSFLHG 111
R + C ++HG
Sbjct: 435 RAENCPYMHG 444
>sp|Q9JJ48|ZC3H8_MOUSE Zinc finger CCCH domain-containing protein 8 OS=Mus musculus
GN=Zc3h8 PE=1 SV=2
Length = 305
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 31/103 (30%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEA 70
C YFL C KG C++ H+ C Y++ G C C + H
Sbjct: 211 CKYFLER--KCIKGDQCKFDHDAEIEKKKEMCKYYVQGYCTKGENCLYLH---------- 258
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGF-CSRGDRCSFLHGP 112
+ PC FY G C +GD C+F H P
Sbjct: 259 -----------------SEYPCKFYHTGTKCYQGDHCNFSHAP 284
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 22/77 (28%)
Query: 35 IARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCY 93
+ R + C Y+L CI +C F H DA + K C
Sbjct: 203 VERKGKQVCKYFLERKCIKGDQCKFDH---DAEI------------------EKKKEMCK 241
Query: 94 FYFNGFCSRGDRCSFLH 110
+Y G+C++G+ C +LH
Sbjct: 242 YYVQGYCTKGENCLYLH 258
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 36/135 (26%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEA 70
C ++L C++G C++ H+ + C ++ G+C+ C + H
Sbjct: 435 CHFYLHG--KCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLKGDDCPYDH---------- 482
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLH------GPDGIAPNGKSSKS 124
E PC + F NG C RGD+C F H GP P+ K S +
Sbjct: 483 --ELSKYPCHN------------FMENGMCIRGDKCKFSHVIPTAEGPS--TPDAKKS-N 525
Query: 125 ASAVTDSLLSENKTS 139
AS+V + + +TS
Sbjct: 526 ASSVPEKANCQEQTS 540
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 39.3 bits (90), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 29/122 (23%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQ 80
C +G C++ H+ I C Y+ +C+ C F H + PC
Sbjct: 364 CHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDH------------DLSKYPCN 411
Query: 81 SSIPVNKTSIPCYFYFNGFCSRGDRCSFLH--GPDGIA--PNGKSSKSASAVTDSLLSEN 136
+ F GFC RGD C F H P + P+ + S++ +T + S
Sbjct: 412 N------------FITKGFCYRGDSCLFSHKGTPQSASDTPSANVTVSSTKITAASFSPQ 459
Query: 137 KT 138
KT
Sbjct: 460 KT 461
>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo
sapiens GN=CPSF4 PE=1 SV=1
Length = 269
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG CE+ H P +Y G C N C F H ++ + + P
Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135
Query: 82 SIPVNKTS--IPCYFYFNGFCSRGDRCSFLH 110
+ ++ + + C Y GFC G C F+H
Sbjct: 136 PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH 166
>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus
norvegicus GN=Cpsf4 PE=2 SV=1
Length = 243
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 15/136 (11%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG CE+ H P +Y G C N C F H ++ + + P
Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135
Query: 82 SIPVNKTS--IPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKS------------SKSASA 127
+ ++ + + C Y GFC G C F+H P P G + +K A
Sbjct: 136 PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQPPLPQQTQPPTKRAPQ 194
Query: 128 VTDSLLSENKTSAGDG 143
V + S+N ++ G
Sbjct: 195 VIGVMQSQNSSAGNRG 210
>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG CE+ H P +Y G C N C F H ++ + + P
Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135
Query: 82 SIPVNKTS--IPCYFYFNGFCSRGDRCSFLH 110
+ ++ + + C Y GFC G C F+H
Sbjct: 136 PLCRHRHTRRVICVNYLVGFCIEGPNCKFMH 166
>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit
4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3
Length = 179
Score = 38.9 bits (89), Expect = 0.11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG C++ H P +Y G+C N C F H + P C+
Sbjct: 76 CKKGDHCKFLHQYDLTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCPWYDQGF-CKD 134
Query: 82 SIPVNKTSIP---CYFYFNGFCSRGDRCSF 108
+P C Y GFC G +C F
Sbjct: 135 GPLCKYRHVPRIMCLNYLVGFCPEGPKCQF 164
>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4
OS=Xenopus laevis GN=cpsf4 PE=2 SV=1
Length = 269
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG CE+ H P +Y G C N C F H ++ + + P
Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135
Query: 82 SIPVNKTS--IPCYFYFNGFCSRGDRCSFLH 110
+ ++ + + C Y GFC G C F+H
Sbjct: 136 PLCRHRHTRRVICVNYLVGFCIEGPNCKFMH 166
>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos
taurus GN=CPSF4 PE=2 SV=1
Length = 243
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
CKKG CE+ H P +Y G C N C F H ++ + + P
Sbjct: 76 CKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHG 135
Query: 82 SIPVNKTS--IPCYFYFNGFCSRGDRCSFLH 110
+ ++ + + C Y GFC G C F+H
Sbjct: 136 PLCRHRHTRRVICVNYLVGFCPEGPSCKFMH 166
>sp|P61129|ZC3H6_HUMAN Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens
GN=ZC3H6 PE=2 SV=2
Length = 1189
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 31/101 (30%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEA 70
C YFL C KG C++ H+ C ++L G C C + H
Sbjct: 278 CKYFLEG--RCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---------- 325
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGF-CSRGDRCSFLH 110
PC FY +G C +GD C F H
Sbjct: 326 -----------------NEFPCKFYHSGAKCYQGDNCKFSH 349
>sp|Q8N5P1|ZC3H8_HUMAN Zinc finger CCCH domain-containing protein 8 OS=Homo sapiens
GN=ZC3H8 PE=1 SV=2
Length = 291
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 22/78 (28%)
Query: 35 IARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCY 93
+ R + C Y+L CI +C F H DA + K C
Sbjct: 189 VERKGKQICKYFLERKCIKGDQCKFDH---DAEI------------------EKKKEMCK 227
Query: 94 FYFNGFCSRGDRCSFLHG 111
FY G+C+RG+ C +LH
Sbjct: 228 FYVQGYCTRGENCLYLHN 245
>sp|Q6C922|YTH1_YARLI mRNA 3'-end-processing protein YTH1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=YTH1 PE=3 SV=1
Length = 193
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEAPSESVSLPCQ 80
CKKGL+CE+ H + P +Y G C +P C + H + + + C+
Sbjct: 68 CKKGLNCEFLHEYNLQKMPECQFYVKNGFCTQSPDCQYLHIDPASKIPVCFNYEKGF-CK 126
Query: 81 SSIPVNKTSI---PCYFYFNGFCSRGDRCSFLH 110
++ I PC Y GFC +G C F H
Sbjct: 127 MGPECSRKHIRRMPCELYMTGFCPKGRVCEFAH 159
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 24/118 (20%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNE-----IA----------RLNPRDCWYWL-AGNC-IN 53
DC Y+L + L C+ G+ C + H + IA R+ +C Y+L G C
Sbjct: 85 DCTYYLRTGL-CRFGMSCRFNHPQDRNLAIASARMKGEYPERMGQPECQYYLKTGTCKFG 143
Query: 54 PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYF-NGFCSRGDRCSFLH 110
P C F HP A + + V L P+ + C +Y G C G+ C F H
Sbjct: 144 PTCKFHHPREKAGI----AGRVQL-NTLGYPLRPSEKECAYYLKTGQCKYGNTCKFHH 196
>sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis
thaliana GN=At1g21570 PE=1 SV=1
Length = 470
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 23/84 (27%)
Query: 27 DCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVN 86
+C+ H I P DC Y+L G C N C +RH + VN
Sbjct: 286 NCKLTHKVIPERMP-DCSYYLQGLCNNEACPYRH----------------------VHVN 322
Query: 87 KTSIPCYFYFNGFCSRGDRCSFLH 110
+ C + G+CS GD C H
Sbjct: 323 PIAPICDGFLKGYCSEGDECRKKH 346
>sp|Q8CHP0|ZC3H3_MOUSE Zinc finger CCCH domain-containing protein 3 OS=Mus musculus
GN=Zc3h3 PE=2 SV=1
Length = 950
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 44/155 (28%)
Query: 12 CVYFLASPLTCKKG-LDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEA 70
C F+ TCKK C + H+ +++ C Y+L G C N C + H
Sbjct: 695 CTRFVRG--TCKKTDGSCPFSHH-VSKEKMPVCSYFLKGICSNSNCPYSH---------- 741
Query: 71 PSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHG---PD----GIAPNGKSSK 123
+ V++ + C + G+C G +C H PD GI P G +
Sbjct: 742 ------------VYVSRKAEVCSDFLKGYCPLGAKCKKKHTLLCPDFARRGICPRGSQCQ 789
Query: 124 SASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEA 158
LL N+ G T +PP P PS+
Sbjct: 790 --------LLHRNQKRHGRRTAAPPI---PGPSDG 813
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 8 RNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNC-INPRCGFRH-PPLDA 65
R+ C YF+ CK+G++C Y H+ + C Y+ G C RC + H PL
Sbjct: 36 RHVTCRYFIHG--VCKEGINCRYSHDLATSRSAMICRYFQRGCCAYGDRCRYEHNKPLQE 93
Query: 66 HVT----EAPSESVSLP 78
T APSES+ P
Sbjct: 94 DPTGDTCTAPSESLPEP 110
>sp|Q94CJ8|C3H55_ARATH Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis
thaliana GN=At5g12440 PE=2 SV=3
Length = 650
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 91 PCYFYFNGFCSRGDRCSFLHG--PDGIAPNGKSSKS 124
PC ++ G C G+ C F+HG PD + NG + S
Sbjct: 232 PCVYFSRGLCKNGESCKFIHGGYPDNMDGNGIVADS 267
>sp|Q750Z6|M28P1_ASHGO Probable zinc metalloprotease AGL209W OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=AGL209W PE=3 SV=1
Length = 1011
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 24/142 (16%)
Query: 313 YLDNEHILDKVREYPGRARERILDSMLSRKRKLF--PMKVSV-DDCNADLRDYLRKRRVV 369
+LD E I Y A +++ D +L R +++ M + DD LR R+ +
Sbjct: 55 WLDLEIITQYPHPYASHANDKVHDYLLDRVKEITRDSMFAEISDDYGMGLRTLFRQEDAI 114
Query: 370 DG---HSIVHSTRRHESSRLMGRIQGRHRGLLLHGRLASEFGKNYIESHGHKGTLPN--G 424
G ++V+ +ESS ++ R+QGR+ L G L S H ++P+ G
Sbjct: 115 SGTKESTVVY----YESSNVLARVQGRNSA--LDGLLLS----------AHYDSVPSGYG 158
Query: 425 ANQHGWARHSKSNILRQHHKGK 446
A G S IL + K +
Sbjct: 159 ATDDGMGVVSMLAILTHYVKNQ 180
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 36 ARLNPRDCWYWL-AGNC-INPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCY 93
AR +C Y+L G+C C + HP P + L +P+ S PC
Sbjct: 298 ARPGQPECQYYLKTGSCKFGSACKYHHP----QYLNTPKSNCML-SPLGLPLRPGSQPCA 352
Query: 94 FYF-NGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDGTGSPP---T 149
+Y +GFC G C F H P G S SAS++TD ++ + +PP +
Sbjct: 353 YYTQHGFCKFGPTCKFDH-PMGTL---SYSPSASSITDLPIAPYPLNYAVAPVAPPSSSS 408
Query: 150 EIRP 153
++RP
Sbjct: 409 DLRP 412
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPR---CGFRH 60
C F + L C +C + H E+ CWY+ +G PR CGFRH
Sbjct: 445 CKTFTSGGL-CLFAANCRFAHGEVELGKKEPCWYFFSGQTC-PRGDTCGFRH 494
>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa
subsp. japonica GN=Os08g0135800 PE=2 SV=1
Length = 958
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQS 81
C +G +C Y H++ P G+R D + + +S
Sbjct: 328 CSRGANCRYVHDDST-----------------PHGGWRDEVRDNAIGRSGPDSSYGNRTE 370
Query: 82 SIPVNKTSIPCYFYFNGFCSRGDRCSFLH 110
NK PC F+ NG C RG C +LH
Sbjct: 371 HRRTNKN--PCKFFANGGCRRGQNCPYLH 397
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIAR--------LNPRDCWYWLAGNCINPRCGFRH--- 60
C F+A C++G +C + H + R ++ R+ + + ++PR +
Sbjct: 235 CRDFVAG--RCRRGSNCRFPHEDGVRRQFDEHYPVDSREKYGHQNRDFMDPREQDDYLRN 292
Query: 61 -PPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNG 119
PP H E E S P + ++++PC+ + G CSRG C ++H D P+G
Sbjct: 293 RPPRGGHYDEGTWER-SEPRREY----RSTMPCHDFVKGRCSRGANCRYVH--DDSTPHG 345
>sp|Q75K81|C3H36_ORYSJ Zinc finger CCCH domain-containing protein 36 OS=Oryza sativa
subsp. japonica GN=Os05g0497500 PE=2 SV=1
Length = 703
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 65 AHVTEAPSESVSLPCQ---SSIP----VNKT-SIPCYFYFNGFCSRGDRCSFLH 110
HV+++P +S +L Q SS P NKT C FY G C G C+FLH
Sbjct: 147 GHVSQSPPDSNALSSQRFGSSSPGGDMKNKTRKRTCTFYAQGRCKNGKSCTFLH 200
>sp|Q93324|MANBA_CAEEL Probable beta-mannosidase OS=Caenorhabditis elegans GN=C33G3.4 PE=1
SV=1
Length = 900
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 402 RLASEFGKNYIESHGHKGTLPNGANQHGWARHSKSNILRQHHKG---KRLLKRKSHL 455
R ASE+G ++S+ K T+ N N+ W SK+ RQHH G LL HL
Sbjct: 555 RCASEYG---VQSYPMKETMLNWINESDWEYTSKAMFHRQHHPGGIATNLLMIFQHL 608
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 45/237 (18%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNEIARL---------------NPR--DC-WYWLAGNC- 51
DC +++ + +CK G C++ H +L NP+ +C +Y+ G C
Sbjct: 106 DCSFYMRT-GSCKYGSSCKFNHPVRRKLQIGRERVRERDEDVENPKLMECKYYFRTGGCK 164
Query: 52 INPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYF-NGFCSRGDRCSFLH 110
C F H + H + A ++ +P+ C FY NG C G C F H
Sbjct: 165 YGESCRFSH--MKEHNSPASVPELNF---LGLPIRPGEKECPFYMRNGSCKFGSDCKFNH 219
Query: 111 GPDGIA-----------PNGKSSKSASAVTDSLLSENKTSAGDGTGSPPTEIRPNPSEAP 159
PD A NG S + S S + T +GTG+ P PS P
Sbjct: 220 -PDPTAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPF----IPSMFP 274
Query: 160 LKLAVDVRVQP-KGHLLQSA--PKRIPERRASPQISLSEGETVAVVKSDSMVAAEGF 213
V + G+ SA P+R P +S Q++ S ET + + ++ E F
Sbjct: 275 HSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQMSVEEF 331
>sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein C337.12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC337.12 PE=4 SV=3
Length = 376
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 9/56 (16%)
Query: 8 RNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPR---DCWYWLAGNCINPRCGFRH 60
R T C FL C K DC H L+PR C Y+L G C NP C + H
Sbjct: 231 RKTICPKFLNG--RCNKAEDCNLSH----ELDPRRIPACRYFLLGKCNNPNCRYVH 280
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 28/135 (20%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHN-----EIAR-------------LNPRDC-WYWLAGNC 51
DC +++ + +CK G C++ H +IAR L DC +Y+ G C
Sbjct: 115 DCSFYMRT-GSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKYYFRTGGC 173
Query: 52 -INPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYF-NGFCSRGDRCSFL 109
C F H + + AP + +P+ + C +Y NG C G C F
Sbjct: 174 KYGETCRFNHTIPKSGLASAPELNFL-----GLPLRPGEVECPYYMRNGSCKYGAECKFN 228
Query: 110 HGPDGIAPNGKSSKS 124
H PD G S S
Sbjct: 229 H-PDPTTIGGTDSPS 242
>sp|O22243|C3H31_ARATH Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis
thaliana GN=At2g47680 PE=2 SV=2
Length = 1015
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 92 CYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSA 125
C ++ NG+C+RG +C+F H P K S+
Sbjct: 733 CVYFLNGYCNRGGQCTFTHTLQSTRPACKFFASS 766
>sp|A7TM20|M28P1_VANPO Probable zinc metalloprotease Kpol_1052p9 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=Kpol_1052p9
PE=3 SV=1
Length = 939
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 313 YLDNEHILDKVREYPGRARERILDSMLSRKRKLFP----MKVSVDDCNADLRDYLRKRRV 368
+LD ++I +K Y + +R+ D +L+R + +VS DD + + R +++ V
Sbjct: 54 WLDLQNITNKCHPYSSKENDRVHDYLLNRIADIINKTSYAEVS-DDYSTNSRALFKQQDV 112
Query: 369 VDGHSIVHSTRRHESSRLMGRIQGRH---RGLLLHG 401
+ SI ESS ++ +++GR+ + LLL
Sbjct: 113 FNASSIASRIIYFESSNILVKMEGRNPVLKSLLLSA 148
>sp|Q10LZ9|C3H23_ORYSJ Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa
subsp. japonica GN=Os03g0329200 PE=2 SV=1
Length = 677
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 91 PCYFYFNGFCSRGDRCSFLHG 111
PC +Y GFC G C F+HG
Sbjct: 233 PCLYYARGFCKNGSTCRFVHG 253
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 42 DCWYWL-AGNC-INPRCGFRHPP--LDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYF- 96
+C Y++ G C RC F HP L A +AP + + P + ++ C +Y
Sbjct: 425 ECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGALNCPYYMK 484
Query: 97 NGFCSRGDRCSFLHGPDG-IAPNGKSSKSASAVTDS 131
G C G C F H P G + S A+ T++
Sbjct: 485 TGTCKYGATCKFDHPPPGEVMAKTTSEADAAGATNT 520
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 11 DCVYFLASPLTCKKGLDCEYRHNEIARLNPRDC---WYWLAGNCINPRCGFRHPPLDAHV 67
DC ++L + +CK G C Y H E P+ + ++ N N G P +
Sbjct: 345 DCPFYLKT-GSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVTPATSFYQ 403
Query: 68 T-EAPSESVSLPCQSSIPVNKTSIPCYFYF-NGFCSRGDRCSFLHGPDGIAPNGKSSKSA 125
T P+ V ++ P C +Y G C G+RC F H D ++ K +
Sbjct: 404 TLTQPTLGV---ISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQ 460
Query: 126 SAVTDSL 132
V SL
Sbjct: 461 PNVKLSL 467
>sp|Q6FTL0|YTH1_CANGA mRNA 3'-end-processing protein YTH1 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=YTH1 PE=3 SV=1
Length = 209
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 12/106 (11%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEAPSESVSLP-C 79
CKK +CEY H R P +Y G C +P C + H +D P E + C
Sbjct: 76 CKKNDNCEYLHEYNLRKMPECVFYAKNGFCTQSPECQYLH--IDPLSKVPPCEDYEMGFC 133
Query: 80 QSSIPVNKTSIP---CYFYFNGFCSRGDR-CS----FLHGPDGIAP 117
K I C Y NGFC G R C F + PD +P
Sbjct: 134 PKGSACEKRHIKKVLCQRYINGFCPLGRRECDMEHPFFYIPDLSSP 179
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 22/146 (15%)
Query: 12 CVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEA 70
C +FL + C KG C +RH I+ C +WL G C +C F H + E
Sbjct: 41 CEFFLKA--ACGKGGMCPFRH--ISGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPEC 96
Query: 71 PSESVSLP-CQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKS-------- 121
S P C+ + + C Y GFC G C F+H P P G +
Sbjct: 97 YFYSKFGPLCRHR---HTRRVICVNYLVGFCPEGPSCKFMH-PRFELPMGTTEQPPLPQQ 152
Query: 122 ----SKSASAVTDSLLSENKTSAGDG 143
+K A V + S+N ++ G
Sbjct: 153 TQPPTKRAPQVIGVMQSQNSSAGNRG 178
>sp|A4IGY3|ZC3HF_XENTR Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis
GN=zc3h15 PE=2 SV=1
Length = 426
Score = 33.5 bits (75), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 89 SIPCYFYFNGFCSRGDRCSFLH 110
S+ C FY G C++GD+C F H
Sbjct: 103 SVVCAFYKQGQCTKGDKCKFSH 124
>sp|Q84VG7|C3H27_ARATH Zinc finger CCCH domain-containing protein 27 OS=Arabidopsis
thaliana GN=FES1 PE=2 SV=2
Length = 587
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 87 KTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNGKSSKSASAVTDSLLSENKTSAGDG 143
+ ++PC F+ G+C G C FLH K S T L+EN + AG+G
Sbjct: 97 RAALPCKFFAKGWCFNGVSCKFLH-----------VKENSNCTSQQLAEN-SMAGNG 141
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 8 RNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNC-INPRCGFRH--PPLD 64
+ C YF+ CKKG +C Y H+ + C Y+ G C RC + H P
Sbjct: 53 KQVTCRYFMHG--VCKKGNNCRYSHDLSTSQSAMVCRYYQRGCCAYGDRCRYEHTKPLKR 110
Query: 65 AHVTEAPSESVS-LPCQSSIPV 85
VT A + S LP SS+P
Sbjct: 111 EEVTAANLAAKSDLPASSSLPA 132
>sp|Q0D3J9|C3H53_ORYSJ Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa
subsp. japonica GN=Os07g0682400 PE=2 SV=1
Length = 682
Score = 33.1 bits (74), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 91 PCYFYFNGFCSRGDRCSFLHG--PDGIAPNGKSSKSA 125
PC +Y G+C G C F+HG PD A GK SA
Sbjct: 234 PCLYYARGYCKNGSACRFVHGGLPDDAA--GKMDPSA 268
>sp|Q758T3|YTH1_ASHGO mRNA 3'-end-processing protein YTH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YTH1
PE=3 SV=1
Length = 209
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 22 CKKGLDCEYRHNEIARLNPRDCWYWLAGNCI-NPRCGFRHPPLDAHVTEAPSESVSL-PC 79
CKK CEY H R P ++ G C +P C + H + V + + P
Sbjct: 75 CKKNDQCEYLHEYNLRKMPECVFFTKNGYCTQSPECQYLHIDPTSKVQQCEDYRMGFCPL 134
Query: 80 QSSIPVNKT-SIPCYFYFNGFCSRGDRCSFLHGP 112
++ P I C Y GFC G C + H P
Sbjct: 135 GTACPCKHVKKIICPKYVTGFCPLGRDCDWEHPP 168
>sp|O74463|YQC1_SCHPO Uncharacterized protein C1739.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1739.01 PE=1 SV=2
Length = 547
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 90 IPCYFYFNGFCSRGDRCSFLH 110
+PC F+ NG C+ G+ C F H
Sbjct: 45 VPCKFFRNGTCTAGENCPFSH 65
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 32.7 bits (73), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 52/139 (37%), Gaps = 39/139 (28%)
Query: 11 DCVYFLASPLTCKKGLDCEYRH-----------NEIARLNPR-----DCWYWLA-GNC-I 52
DC Y++ +CK G+ C Y H + A PR DC Y++ G+C
Sbjct: 49 DCSYYVKFG-SCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKF 107
Query: 53 NPRCGFRHPP---------------LDAHVTEAPS--ESVSLPCQSSIPVNKTSIPCYFY 95
C F HPP H E S E V L +P+ + C +Y
Sbjct: 108 GMNCRFNHPPRMPVPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLG-LPLRPGTGLCSYY 166
Query: 96 FN-GFCSRGDRCSFLHGPD 113
N G C G C F H PD
Sbjct: 167 MNRGICKFGTNCKFDH-PD 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,907,960
Number of Sequences: 539616
Number of extensions: 10185506
Number of successful extensions: 21048
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 119
Number of HSP's that attempted gapping in prelim test: 20790
Number of HSP's gapped (non-prelim): 341
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)