Query 009239
Match_columns 539
No_of_seqs 171 out of 724
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 21:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009239.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009239hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.4 1.2E-13 4.3E-18 114.1 3.9 57 5-64 6-63 (77)
2 2rhk_C Cleavage and polyadenyl 99.3 6.4E-13 2.2E-17 109.0 1.4 58 4-64 11-69 (72)
3 3d2q_A Muscleblind-like protei 99.1 2.8E-11 9.7E-16 98.4 1.2 55 7-63 4-65 (70)
4 2cqe_A KIAA1064 protein; CCCH 99.0 3.9E-10 1.3E-14 97.5 5.0 57 30-113 3-61 (98)
5 2e5s_A Otthump00000018578; ZF- 99.0 4.4E-11 1.5E-15 103.5 -1.4 55 8-64 19-80 (98)
6 2cqe_A KIAA1064 protein; CCCH 98.9 4.3E-10 1.5E-14 97.2 3.8 51 6-64 10-62 (98)
7 2rhk_C Cleavage and polyadenyl 98.9 2.9E-10 9.9E-15 93.2 1.9 59 32-113 8-68 (72)
8 3d2n_A Muscleblind-like protei 98.9 6.1E-10 2.1E-14 93.9 2.2 55 8-64 8-67 (83)
9 2rpp_A Muscleblind-like protei 98.8 7.7E-10 2.6E-14 94.5 0.7 55 7-63 15-74 (89)
10 2d9n_A Cleavage and polyadenyl 98.8 1.4E-09 4.9E-14 89.7 2.3 52 39-113 9-62 (77)
11 1m9o_A Tristetraproline; Cys3H 98.8 1.9E-09 6.5E-14 87.8 2.4 57 6-63 9-75 (77)
12 3d2q_A Muscleblind-like protei 98.7 2.9E-09 9.9E-14 86.5 2.3 56 41-112 7-64 (70)
13 2e5s_A Otthump00000018578; ZF- 98.7 2.8E-09 9.5E-14 92.3 0.9 70 25-112 7-78 (98)
14 1m9o_A Tristetraproline; Cys3H 98.6 2.6E-08 9.1E-13 81.0 3.4 62 39-113 11-75 (77)
15 3d2n_A Muscleblind-like protei 98.5 2.8E-08 9.5E-13 83.7 2.6 56 40-113 9-66 (83)
16 2rpp_A Muscleblind-like protei 98.5 2.6E-08 9.1E-13 85.0 2.2 68 25-112 4-73 (89)
17 2lhn_A Nuclear polyadenylated 97.2 1.1E-06 3.6E-11 73.9 0.0 66 7-112 7-72 (80)
18 3u9g_A Zinc finger CCCH-type a 97.6 3.1E-05 1.1E-09 76.0 4.3 71 10-114 90-199 (229)
19 2lhn_A Nuclear polyadenylated 95.3 0.00067 2.3E-08 56.9 0.0 55 40-124 9-63 (80)
20 2fc6_A Nuclear, target of EGR1 95.6 0.0044 1.5E-07 47.7 2.0 30 88-117 19-49 (50)
21 3u9g_A Zinc finger CCCH-type a 95.1 0.01 3.6E-07 58.3 3.3 47 9-65 151-200 (229)
22 2d9m_A Zinc finger CCCH-type d 92.8 0.028 9.5E-07 46.0 0.9 28 8-37 19-46 (69)
23 2d9m_A Zinc finger CCCH-type d 92.5 0.027 9.1E-07 46.1 0.4 24 89-112 20-43 (69)
24 3u1l_A PRE-mRNA-splicing facto 91.9 0.032 1.1E-06 54.9 0.3 25 88-112 69-93 (240)
25 3u1l_A PRE-mRNA-splicing facto 90.8 0.057 2E-06 53.1 0.7 23 40-62 70-93 (240)
26 2fc6_A Nuclear, target of EGR1 85.0 0.43 1.5E-05 36.8 2.1 37 26-62 6-44 (50)
27 1cqt_I POU domain, class 2, as 28.3 21 0.00073 26.4 1.3 18 511-528 18-38 (44)
28 3v33_A Ribonuclease ZC3H12A; r 20.4 21 0.00073 34.9 0.0 25 88-114 191-215 (223)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=114.09 Aligned_cols=57 Identities=30% Similarity=0.690 Sum_probs=50.4
Q ss_pred hccCCccccccccCccCCCCCCCCCCCCcccccCCCccCccccc-CccCCCCCCCCCCCCC
Q 009239 5 LQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLD 64 (539)
Q Consensus 5 ~~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~p~vCkyFL~-G~Ctn~~CpFsH~~~d 64 (539)
...+..+|+||++| .|++|++|.|+|+......+ +|+||+. |.|.++.|+|+|....
T Consensus 6 ~~~k~~~C~~fl~G--~C~~G~~C~fsH~~~~~~~~-~C~~f~~~G~C~~~~C~f~H~~~~ 63 (77)
T 2d9n_A 6 SGEKTVVCKHWLRG--LCKKGDQCEFLHEYDMTKMP-ECYFYSKFGECSNKECPFLHIDPE 63 (77)
T ss_dssp SCCTTSBCHHHHTT--CCSCTTSSSSBCSCCTTTSC-BCHHHHHTCCCCCSSCSSBCCCTT
T ss_pred CCCcceeCHhHccC--cCCCCCCCCCccccccCcCC-CCcccCCCCccCCCCeeccCCCcc
Confidence 34678999999998 99999999999999876555 8999997 9999999999999753
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.27 E-value=6.4e-13 Score=108.95 Aligned_cols=58 Identities=28% Similarity=0.625 Sum_probs=51.2
Q ss_pred hhccCCccccccccCccCCCCCCCCCCCCcccccCCCccCccccc-CccCCCCCCCCCCCCC
Q 009239 4 ELQKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLA-GNCINPRCGFRHPPLD 64 (539)
Q Consensus 4 ~~~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~p~vCkyFL~-G~Ctn~~CpFsH~~~d 64 (539)
....+..+|+||++| .|++|+.|+|+|+......+ +|+||+. |.|.++.|+|.|....
T Consensus 11 ~~~~k~~vCk~fl~G--~C~~G~~C~fsH~~~~~~~~-~C~~f~~~G~C~~~~C~y~H~~p~ 69 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRG--LCKKGDQCEFLHEYDMTKMS-ECYFYSKFGECSNKECPFLHIDPE 69 (72)
T ss_dssp SSCCCCSBCHHHHTT--CCCCGGGSSSBCSCCTTSCC-BCHHHHHHSCCSBTTCCSBCCCCC
T ss_pred CCCCcCeeCHHHhcC--CCCCCCCCCCccccccccCC-cccccCCCCCCCCCCeeccCCCcc
Confidence 345678999999998 99999999999998766555 9999997 9999999999999754
No 3
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.05 E-value=2.8e-11 Score=98.36 Aligned_cols=55 Identities=25% Similarity=0.667 Sum_probs=46.6
Q ss_pred cCCccccccccCccCCCCCC-CCCCCCcccc------cCCCccCcccccCccCCCCCCCCCCCC
Q 009239 7 KRNTDCVYFLASPLTCKKGL-DCEYRHNEIA------RLNPRDCWYWLAGNCINPRCGFRHPPL 63 (539)
Q Consensus 7 kk~~~CryFl~gpG~CkKGd-~C~F~Hd~~~------~~~p~vCkyFL~G~Ctn~~CpFsH~~~ 63 (539)
.+.++|++|++| .|++|+ .|+|+|+... .....+|++|++|.|.+++|+|.|++.
T Consensus 4 ~k~~vC~~f~~G--~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~ 65 (70)
T 3d2q_A 4 DRLEVCREYQRG--NCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPA 65 (70)
T ss_dssp CEEEBCHHHHTT--CCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCH
T ss_pred ccchhCHHHhcC--CCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHH
Confidence 457899999998 999999 5999998742 123458999999999999999999964
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.96 E-value=3.9e-10 Score=97.49 Aligned_cols=57 Identities=28% Similarity=0.665 Sum_probs=42.1
Q ss_pred CCCcccccCCCccCcccccCccCC-CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccc-cCCCCCCCCCCC
Q 009239 30 YRHNEIARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFY-FNGFCSRGDRCS 107 (539)
Q Consensus 30 F~Hd~~~~~~p~vCkyFL~G~Ctn-~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff-~~G~C~KGd~Cp 107 (539)
|.|+........+|+||++|.|.+ ++|+|+|.. .+|+|| ..|.|.+|+.|+
T Consensus 3 ~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~~---------------------------~~C~~f~~~G~C~~G~~C~ 55 (98)
T 2cqe_A 3 SGSSGELPKKRELCKFYITGFCARAENCPYMHGD---------------------------FPCKLYHTTGNCINGDDCM 55 (98)
T ss_dssp CCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSSS---------------------------SBCSHHHHTSCCSSCTTCS
T ss_pred ccccCCCCCCCccCcccccCcCCCCCCCCCCCCC---------------------------CcCcCcccCCcCCCCCCCc
Confidence 677776555556788888888887 778888871 348877 478888888888
Q ss_pred CCCCCC
Q 009239 108 FLHGPD 113 (539)
Q Consensus 108 F~H~~~ 113 (539)
|.|.+.
T Consensus 56 f~H~~~ 61 (98)
T 2cqe_A 56 FSHDPL 61 (98)
T ss_dssp SBCCCC
T ss_pred ccCCCC
Confidence 888764
No 5
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=4.4e-11 Score=103.54 Aligned_cols=55 Identities=25% Similarity=0.685 Sum_probs=47.6
Q ss_pred CCccccccccCccCCCCCC-CCCCCCccccc------CCCccCcccccCccCCCCCCCCCCCCC
Q 009239 8 RNTDCVYFLASPLTCKKGL-DCEYRHNEIAR------LNPRDCWYWLAGNCINPRCGFRHPPLD 64 (539)
Q Consensus 8 k~~~CryFl~gpG~CkKGd-~C~F~Hd~~~~------~~p~vCkyFL~G~Ctn~~CpFsH~~~d 64 (539)
+.++|++|++| .|++|+ .|+|+|+.... ....+|++|++|+|.+.+|+|.|++..
T Consensus 19 k~~VCr~FlrG--~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~ 80 (98)
T 2e5s_A 19 KLEVCREFQRG--NCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAH 80 (98)
T ss_dssp EEEBCSHHHHT--CCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHH
T ss_pred hhhhhHHHhcC--cCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHH
Confidence 56899999998 999999 89999998642 234599999999999999999999753
No 6
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.93 E-value=4.3e-10 Score=97.18 Aligned_cols=51 Identities=33% Similarity=0.832 Sum_probs=45.8
Q ss_pred ccCCccccccccCccCCCCCCCCCCCCcccccCCCccCcccc-cCccCC-CCCCCCCCCCC
Q 009239 6 QKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWL-AGNCIN-PRCGFRHPPLD 64 (539)
Q Consensus 6 ~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~p~vCkyFL-~G~Ctn-~~CpFsH~~~d 64 (539)
.+++.+|+||++| .|++|+.|+|+|+ ..+|++|+ .|.|.+ +.|+|+|....
T Consensus 10 ~~k~~lC~~f~~G--~C~~G~~C~f~H~------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITG--FCARAENCPYMHG------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTT--CCSCSTTCSSBSS------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccC--cCCCCCCCCCCCC------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 4688999999987 9999999999999 34899997 999999 99999999754
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.90 E-value=2.9e-10 Score=93.18 Aligned_cols=59 Identities=34% Similarity=0.685 Sum_probs=47.7
Q ss_pred CcccccCCCccCcccccCccCC-CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccC-CCCCCCCCCCCC
Q 009239 32 HNEIARLNPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFN-GFCSRGDRCSFL 109 (539)
Q Consensus 32 Hd~~~~~~p~vCkyFL~G~Ctn-~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~-G~C~KGd~CpF~ 109 (539)
|.........+|+||++|.|.+ ++|+|+|.... ...++|+||++ |.|.+ ++|+|.
T Consensus 8 ~~~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~----------------------~~~~~C~~f~~~G~C~~-~~C~y~ 64 (72)
T 2rhk_C 8 HSHMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM----------------------TKMSECYFYSKFGECSN-KECPFL 64 (72)
T ss_dssp CCSSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCT----------------------TSCCBCHHHHHHSCCSB-TTCCSB
T ss_pred cccCCCCcCeeCHHHhcCCCCCCCCCCCcccccc----------------------ccCCcccccCCCCCCCC-CCeecc
Confidence 3334445667999999999999 99999999632 13568999998 99999 899999
Q ss_pred CCCC
Q 009239 110 HGPD 113 (539)
Q Consensus 110 H~~~ 113 (539)
|...
T Consensus 65 H~~p 68 (72)
T 2rhk_C 65 HIDP 68 (72)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 9874
No 8
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.86 E-value=6.1e-10 Score=93.86 Aligned_cols=55 Identities=25% Similarity=0.560 Sum_probs=46.9
Q ss_pred CCccccccccCccCCCCCC-CCCCCCccccc----CCCccCcccccCccCCCCCCCCCCCCC
Q 009239 8 RNTDCVYFLASPLTCKKGL-DCEYRHNEIAR----LNPRDCWYWLAGNCINPRCGFRHPPLD 64 (539)
Q Consensus 8 k~~~CryFl~gpG~CkKGd-~C~F~Hd~~~~----~~p~vCkyFL~G~Ctn~~CpFsH~~~d 64 (539)
+.++|++|++| .|.+|+ .|+|+|..... ....+|++|++|.|.++.|+|.|++..
T Consensus 8 ~~~VCr~FlrG--~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQRG--TCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGGT--CCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCSSCSSCCCCHH
T ss_pred cchhcHHHhcC--CCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCCCcceeCChHH
Confidence 56899999998 999997 99999998531 123599999999999999999999753
No 9
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.79 E-value=7.7e-10 Score=94.45 Aligned_cols=55 Identities=25% Similarity=0.565 Sum_probs=47.3
Q ss_pred cCCccccccccCccCCCCCC-CCCCCCccccc----CCCccCcccccCccCCCCCCCCCCCC
Q 009239 7 KRNTDCVYFLASPLTCKKGL-DCEYRHNEIAR----LNPRDCWYWLAGNCINPRCGFRHPPL 63 (539)
Q Consensus 7 kk~~~CryFl~gpG~CkKGd-~C~F~Hd~~~~----~~p~vCkyFL~G~Ctn~~CpFsH~~~ 63 (539)
-+.++|++|++| .|++|+ .|+|+|..... ....+|++|++|.|.++.|+|.|.+.
T Consensus 15 ~~~~VCrdFlrG--~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~~Cky~H~~~ 74 (89)
T 2rpp_A 15 LTLEVCRQFQRG--TCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRENCKYLHPPT 74 (89)
T ss_dssp SEECBCHHHHHT--CCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCTTCCSBCCCH
T ss_pred chhhhchHHhcC--CCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCCCcceecCHH
Confidence 356799999998 999998 99999998641 12358999999999999999999975
No 10
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-09 Score=89.74 Aligned_cols=52 Identities=37% Similarity=0.727 Sum_probs=44.0
Q ss_pred CCccCcccccCccCC-CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccC-CCCCCCCCCCCCCCCC
Q 009239 39 NPRDCWYWLAGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFN-GFCSRGDRCSFLHGPD 113 (539)
Q Consensus 39 ~p~vCkyFL~G~Ctn-~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~-G~C~KGd~CpF~H~~~ 113 (539)
...+|+||++|.|.+ ++|+|+|.... ....+|+||++ |.|. |++|+|.|...
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~~~~----------------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHEYDM----------------------TKMPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCSCCT----------------------TTSCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred cceeCHhHccCcCCCCCCCCCcccccc----------------------CcCCCCcccCCCCccC-CCCeeccCCCc
Confidence 456999999999999 99999999642 12457999988 9999 89999999973
No 11
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.77 E-value=1.9e-09 Score=87.77 Aligned_cols=57 Identities=25% Similarity=0.526 Sum_probs=26.6
Q ss_pred ccCCccccccccCccCCCCCCCCCCCCcccccCC--------CccCcccc-cCccCC-CCCCCCCCCC
Q 009239 6 QKRNTDCVYFLASPLTCKKGLDCEYRHNEIARLN--------PRDCWYWL-AGNCIN-PRCGFRHPPL 63 (539)
Q Consensus 6 ~kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~--------p~vCkyFL-~G~Ctn-~~CpFsH~~~ 63 (539)
..++.+|++|+.. |.|++|+.|.|.|+..+... ..+|++|. .|.|.+ +.|+|.|...
T Consensus 9 ~~kt~~C~~f~~~-G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 9 RYKTELCRTYSES-GRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CCCSCCCSGGGGT-SCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred CccchhCHHhhhC-CCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 4578999999743 49999999999999875432 45898776 999998 9999999864
No 12
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.73 E-value=2.9e-09 Score=86.48 Aligned_cols=56 Identities=32% Similarity=0.751 Sum_probs=44.0
Q ss_pred ccCcccccCccCC-C-CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCC
Q 009239 41 RDCWYWLAGNCIN-P-RCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGP 112 (539)
Q Consensus 41 ~vCkyFL~G~Ctn-~-~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~KGd~CpF~H~~ 112 (539)
.+|++|++|.|.+ + .|+|+|+...... . .......+|++|++|.|.+| +|+|.|.+
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~~~~~~~------~---------~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHPADSTMI------D---------TNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCCCTTSCC------B---------TTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred hhCHHHhcCCCCCCCCCCCCccCcccccc------c---------ccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 4899999999999 6 6999998642110 0 01224778999999999999 99999986
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.8e-09 Score=92.28 Aligned_cols=70 Identities=26% Similarity=0.589 Sum_probs=51.6
Q ss_pred CCCCCCCCcccccCCCccCcccccCccCC-C-CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 009239 25 GLDCEYRHNEIARLNPRDCWYWLAGNCIN-P-RCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSR 102 (539)
Q Consensus 25 Gd~C~F~Hd~~~~~~p~vCkyFL~G~Ctn-~-~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~K 102 (539)
|..+...|.... ...+|++|++|.|.+ + .|+|+|+...... . .......+|++|++|.|.+
T Consensus 7 ~~~~~~K~~~~~--k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~--~-------------~~~~~~~vC~~flkG~C~r 69 (98)
T 2e5s_A 7 GSTATQKLLRTD--KLEVCREFQRGNCARGETDCRFAHPADSTMI--D-------------TSDNTVTVCMDYIKGRCMR 69 (98)
T ss_dssp CSSCCCCCCCSS--EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSC--C-------------TTTCEEEBCHHHHHTCCCC
T ss_pred CccccccccChh--hhhhhHHHhcCcCCCCCCCCCCcCCchhccc--c-------------ccCCccccchhhccCCCCC
Confidence 345555555442 345999999999999 5 7999999743110 0 0123577899999999999
Q ss_pred CCCCCCCCCC
Q 009239 103 GDRCSFLHGP 112 (539)
Q Consensus 103 Gd~CpF~H~~ 112 (539)
| +|+|.|.+
T Consensus 70 ~-~C~y~H~~ 78 (98)
T 2e5s_A 70 E-KCKYFHPP 78 (98)
T ss_dssp T-TCCSBCCC
T ss_pred C-CcCccCCh
Confidence 9 99999997
No 14
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.56 E-value=2.6e-08 Score=80.99 Aligned_cols=62 Identities=26% Similarity=0.582 Sum_probs=23.6
Q ss_pred CCccCcccc-cCccCC-CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccc-cccCCCCCCCCCCCCCCCCC
Q 009239 39 NPRDCWYWL-AGNCIN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCY-FYFNGFCSRGDRCSFLHGPD 113 (539)
Q Consensus 39 ~p~vCkyFL-~G~Ctn-~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~-Ff~~G~C~KGd~CpF~H~~~ 113 (539)
.+.+|++|+ .|.|.. ++|.|+|...+.... . ........+|+ |+..|+|+.|++|+|.|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~--~-----------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQA--N-----------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT--C-------------------------------------------
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChhhccc--c-----------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 567999997 999998 999999997543210 0 00122467898 55799999999999999863
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.53 E-value=2.8e-08 Score=83.72 Aligned_cols=56 Identities=36% Similarity=0.806 Sum_probs=44.7
Q ss_pred CccCcccccCccCCC--CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCC
Q 009239 40 PRDCWYWLAGNCINP--RCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPD 113 (539)
Q Consensus 40 p~vCkyFL~G~Ctn~--~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~KGd~CpF~H~~~ 113 (539)
..+|++|++|.|.+. .|+|+|++..... . .....+|.+|++|.|.++ .|+|.|.+.
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------~-----------~~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSKSCQV------E-----------NGRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCTTCCE------E-----------TTEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCccccc------c-----------CCceeehhHhhhccccCC-CcceeCChH
Confidence 358999999999994 9999999742110 0 124678999999999999 999999973
No 16
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.52 E-value=2.6e-08 Score=84.97 Aligned_cols=68 Identities=32% Similarity=0.692 Sum_probs=53.7
Q ss_pred CCCCCCCCcccccCCCccCcccccCccCC-C-CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 009239 25 GLDCEYRHNEIARLNPRDCWYWLAGNCIN-P-RCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSR 102 (539)
Q Consensus 25 Gd~C~F~Hd~~~~~~p~vCkyFL~G~Ctn-~-~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~K 102 (539)
|..+.++++.... ..+|++|++|.|.+ + .|+|+|++..... . .-...+|++|++|.|.+
T Consensus 4 ~~~~~~~~~~~~~--~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v------~-----------~~~~~vC~dflkG~C~r 64 (89)
T 2rpp_A 4 GSSGPVRDTKWLT--LEVCRQFQRGTCSRSDEECKFAHPPKSCQV------E-----------NGRVIACFDSLKGRCSR 64 (89)
T ss_dssp CCCSCCCSCSSSE--ECBCHHHHHTCCCCCTTTSSSBCCCSSSCC------B-----------TTBEEBCHHHHHTCCCC
T ss_pred cccccccCCCcch--hhhchHHhcCCCCCCCCCCCCcCCCccccc------c-----------CCceeeehhhhhCcCCC
Confidence 6778888887642 34899999999999 4 9999999743110 0 12467899999999999
Q ss_pred CCCCCCCCCC
Q 009239 103 GDRCSFLHGP 112 (539)
Q Consensus 103 Gd~CpF~H~~ 112 (539)
+ .|+|.|.+
T Consensus 65 ~-~Cky~H~~ 73 (89)
T 2rpp_A 65 E-NCKYLHPP 73 (89)
T ss_dssp T-TCCSBCCC
T ss_pred C-CcceecCH
Confidence 8 99999997
No 17
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=97.20 E-value=1.1e-06 Score=73.89 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=53.7
Q ss_pred cCCccccccccCccCCCCCCCCCCCCcccccCCCccCcccccCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 009239 7 KRNTDCVYFLASPLTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVN 86 (539)
Q Consensus 7 kk~~~CryFl~gpG~CkKGd~C~F~Hd~~~~~~p~vCkyFL~G~Ctn~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~ 86 (539)
+..+.|+||. .|++ ..|.|.|... ...|+|+. .|++++|.|.|+.
T Consensus 7 ~~~e~CKf~~----~Ctn-~~C~f~Hp~~----~~~Cr~g~--~C~~~~C~f~HP~------------------------ 51 (80)
T 2lhn_A 7 KSLEQCKFGT----HCTN-KRCKYRHARS----HIMCREGA--NCTRIDCLFGHPI------------------------ 51 (80)
Confidence 4568999997 6999 9999999764 34899974 8999999999973
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCC
Q 009239 87 KTSIPCYFYFNGFCSRGDRCSFLHGP 112 (539)
Q Consensus 87 k~~~pC~Ff~~G~C~KGd~CpF~H~~ 112 (539)
..+|+|+. .|.+ ..|+|.|..
T Consensus 52 --~~~Crf~~--~C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 52 --NEDCRFGV--NCKN-IYCLFRHPP 72 (80)
Confidence 24588864 5999 599999964
No 18
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.63 E-value=3.1e-05 Score=76.03 Aligned_cols=71 Identities=25% Similarity=0.497 Sum_probs=54.5
Q ss_pred ccccccccCccCC----CCCCCCCCCCccccc-----------------------------CCCccCcccccC-----cc
Q 009239 10 TDCVYFLASPLTC----KKGLDCEYRHNEIAR-----------------------------LNPRDCWYWLAG-----NC 51 (539)
Q Consensus 10 ~~CryFl~gpG~C----kKGd~C~F~Hd~~~~-----------------------------~~p~vCkyFL~G-----~C 51 (539)
-.|+||+.| .| ..+..|+|.|+.... .-|.+|.+| +| .|
T Consensus 90 HLCK~~l~G--~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C 166 (229)
T 3u9g_A 90 HLCKLNLLG--RCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTC 166 (229)
T ss_dssp CCCHHHHTT--CCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSC
T ss_pred eechhhhcC--cCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcC
Confidence 578899988 99 356789999988531 136788888 64 67
Q ss_pred CC-CCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCC
Q 009239 52 IN-PRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDG 114 (539)
Q Consensus 52 tn-~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~KGd~CpF~H~~~~ 114 (539)
+. +.|...|. |.+|.+|.|.. .+|+-.|....
T Consensus 167 ~~~~~C~kLHI------------------------------C~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 167 GQPQPCERLHI------------------------------CEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp SSSSCCCSBCS------------------------------CHHHHTTCCCC-SSCSSCCCTTS
T ss_pred CCCCCCcceec------------------------------cchhhcCCcCC-CCccCccCccC
Confidence 76 77777666 88999999999 69999998753
No 19
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.28 E-value=0.00067 Score=56.91 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=40.9
Q ss_pred CccCcccccCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 009239 40 PRDCWYWLAGNCINPRCGFRHPPLDAHVTEAPSESVSLPCQSSIPVNKTSIPCYFYFNGFCSRGDRCSFLHGPDGIAPNG 119 (539)
Q Consensus 40 p~vCkyFL~G~Ctn~~CpFsH~~~d~~~~ec~~~p~g~~C~~s~p~~k~~~pC~Ff~~G~C~KGd~CpF~H~~~~p~~~G 119 (539)
...|+||. .|+|+.|+|.|... .++|+|+ ..|.+ .+|.|.|.....|-.|
T Consensus 9 ~e~CKf~~--~Ctn~~C~f~Hp~~-------------------------~~~Cr~g--~~C~~-~~C~f~HP~~~~Crf~ 58 (80)
T 2lhn_A 9 LEQCKFGT--HCTNKRCKYRHARS-------------------------HIMCREG--ANCTR-IDCLFGHPINEDCRFG 58 (80)
Confidence 45899997 89999999999842 3578886 46999 5899999744444455
Q ss_pred CCCCC
Q 009239 120 KSSKS 124 (539)
Q Consensus 120 ~~~k~ 124 (539)
..|.+
T Consensus 59 ~~C~n 63 (80)
T 2lhn_A 59 VNCKN 63 (80)
Confidence 55544
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.64 E-value=0.0044 Score=47.67 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=26.1
Q ss_pred CCcccc-cccCCCCCCCCCCCCCCCCCCCCC
Q 009239 88 TSIPCY-FYFNGFCSRGDRCSFLHGPDGIAP 117 (539)
Q Consensus 88 ~~~pC~-Ff~~G~C~KGd~CpF~H~~~~p~~ 117 (539)
...+|. |...|||++|.+|++.|..+.|+.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~~ 49 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGPSS 49 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCCCC
Confidence 567897 668999999999999999988763
No 21
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=95.14 E-value=0.01 Score=58.30 Aligned_cols=47 Identities=28% Similarity=0.474 Sum_probs=41.2
Q ss_pred CccccccccCc---cCCCCCCCCCCCCcccccCCCccCcccccCccCCCCCCCCCCCCCc
Q 009239 9 NTDCVYFLASP---LTCKKGLDCEYRHNEIARLNPRDCWYWLAGNCINPRCGFRHPPLDA 65 (539)
Q Consensus 9 ~~~CryFl~gp---G~CkKGd~C~F~Hd~~~~~~p~vCkyFL~G~Ctn~~CpFsH~~~d~ 65 (539)
.++|.+| .|. |.|+.++.|...| +|.+|++|.|...+|+-+|...+.
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH---------IC~~Fl~G~C~f~~CkRsH~~~~~ 200 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH---------ICEHFTRGNCSYLNCLRSHNLMDR 200 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC---------SCHHHHTTCCCCSSCSSCCCTTSH
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee---------ccchhhcCCcCCCCccCccCccCc
Confidence 6899999 753 5899999999888 899999999998999999997653
No 22
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.83 E-value=0.028 Score=45.99 Aligned_cols=28 Identities=21% Similarity=0.570 Sum_probs=21.2
Q ss_pred CCccccccccCccCCCCCCCCCCCCccccc
Q 009239 8 RNTDCVYFLASPLTCKKGLDCEYRHNEIAR 37 (539)
Q Consensus 8 k~~~CryFl~gpG~CkKGd~C~F~Hd~~~~ 37 (539)
+..+|.+|..| .|..|+.|.|.|...+.
T Consensus 19 k~~LC~~~~~G--~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMNG--TCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHHS--CCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCcC--CCCCCCccCCcCCHHHH
Confidence 44788888666 88888888888887654
No 23
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.51 E-value=0.027 Score=46.11 Aligned_cols=24 Identities=42% Similarity=0.915 Sum_probs=21.8
Q ss_pred CcccccccCCCCCCCCCCCCCCCC
Q 009239 89 SIPCYFYFNGFCSRGDRCSFLHGP 112 (539)
Q Consensus 89 ~~pC~Ff~~G~C~KGd~CpF~H~~ 112 (539)
..+|..|..|.|+.|++|.|.|..
T Consensus 20 ~~LC~~~~~G~C~~G~~C~FAHG~ 43 (69)
T 2d9m_A 20 FSICDRYMNGTCPEGNSCKFAHGN 43 (69)
T ss_dssp CSBCHHHHHSCCSSCSSCSSBSSH
T ss_pred cccCcccCcCCCCCCCccCCcCCH
Confidence 488997799999999999999986
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.94 E-value=0.032 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.882 Sum_probs=22.4
Q ss_pred CCcccccccCCCCCCCCCCCCCCCC
Q 009239 88 TSIPCYFYFNGFCSRGDRCSFLHGP 112 (539)
Q Consensus 88 ~~~pC~Ff~~G~C~KGd~CpF~H~~ 112 (539)
....|.||.+|.|.+|..|+|.|..
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CCeEcCccccCCCCCCCCCCccCCC
Confidence 3568999999999999999999975
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.77 E-value=0.057 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=12.9
Q ss_pred CccCcccccCccCC-CCCCCCCCC
Q 009239 40 PRDCWYWLAGNCIN-PRCGFRHPP 62 (539)
Q Consensus 40 p~vCkyFL~G~Ctn-~~CpFsH~~ 62 (539)
+.+|-||.+|.|.+ ..|+|+|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 33565555565555 556666553
No 26
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=84.97 E-value=0.43 Score=36.76 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=26.5
Q ss_pred CCCCCCCcccccCCCccCcccc-cCccCC-CCCCCCCCC
Q 009239 26 LDCEYRHNEIARLNPRDCWYWL-AGNCIN-PRCGFRHPP 62 (539)
Q Consensus 26 d~C~F~Hd~~~~~~p~vCkyFL-~G~Ctn-~~CpFsH~~ 62 (539)
..|...+.........+|.-|. .|.|.+ .+|+|+|+.
T Consensus 6 ~rcclp~~~~~~~~~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 6 SGCCLPPATHRPHPTSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp CCCCCCTTSCCCCCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred CCccCCCcccCccccchhhhccccccCCCCCCCCccccC
Confidence 3566655544333445899999 799997 999999985
No 27
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=28.31 E-value=21 Score=26.43 Aligned_cols=18 Identities=39% Similarity=0.776 Sum_probs=14.2
Q ss_pred CCCCC---CcHHHHHhhhcCC
Q 009239 511 DFQGP---KPLSEILKEKRRP 528 (539)
Q Consensus 511 ~FegP---KpLseILK~Kr~~ 528 (539)
+++|= -|.-|+|+|||+-
T Consensus 18 PYqGVRVkePVKELLrRKRG~ 38 (44)
T 1cqt_I 18 PYQGVRVKEPVKELLRRKRGH 38 (44)
T ss_dssp CCCSCCCSSCHHHHHHHTTC-
T ss_pred CccceecccHHHHHHHHhhcc
Confidence 66664 5899999999995
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=20.43 E-value=21 Score=34.88 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCcccccccCCCCCCCCCCCCCCCCCC
Q 009239 88 TSIPCYFYFNGFCSRGDRCSFLHGPDG 114 (539)
Q Consensus 88 ~~~pC~Ff~~G~C~KGd~CpF~H~~~~ 114 (539)
...+|+|.. .|+.|.+|+|.|..-.
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPERP 215 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCccC
Confidence 467899854 5999999999998744
Done!