BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009241
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/530 (41%), Positives = 302/530 (56%), Gaps = 26/530 (4%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF SF +AT + YDY+++GGGT+GCPLAA+LS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ + F L + +P +RF+SEDG+ + R RVLGG + INAG Y RA
Sbjct: 60 PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
Y A WD LVN++Y+WVE +V++P Q WQS + +E GV P +GF+ DH
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT+I G+ D RH A +LL N + L V +HASV KI+F N A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 237
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R+ K E+IVSAG +G+PQLL+LSGVGP +L + NI VVL P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAXXXXXXXXXXXX 371
DNP N I + P P+E +++ V+GI+ F S F
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTF 355
Query: 372 FIF-EKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
F K+ GP+S G L L+ + N +P+V FNY+ DL CV G
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 430 XXXXYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
+++ N+ +P LPK + E FCR++V + WHYHGGC VGKV+D
Sbjct: 416 KPYKVEDLPGVEGFNILG-IP---LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 471
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
D++V G++ALRVVDGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 472 GDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/530 (41%), Positives = 302/530 (56%), Gaps = 26/530 (4%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF SF +AT + YDY+++GGGT+GCPLAA+LS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ + F L + +P +RF+SEDG+ + R RVLGG + INAG Y RA
Sbjct: 60 PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
Y A WD LVN++Y+WVE +V++P Q WQS + +E GV P +GF+ DH
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT+I G+ D RH A +LL N + L V +HASV KI+F N A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 237
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R+ K E+IVSAG +G+PQLL+LSGVGP +L + NI VVL P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAXXXXXXXXXXXX 371
DNP N I + P P+E +++ V+GI+ F S F
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTF 355
Query: 372 FIF-EKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
F K+ GP+S G L L+ + N +P+V FNY+ DL CV G
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 430 XXXXYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
+++ N+ +P LPK + E FCR++V + WHYHGGC VGKV+D
Sbjct: 416 KPYKVEDLPGVEGFNILG-IP---LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 471
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
D++V G++ALRVVDGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 472 GDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/531 (40%), Positives = 296/531 (55%), Gaps = 29/531 (5%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF SF +AT + YDY+++GGGT+GCPLAA+LS+ VL+LERG
Sbjct: 7 HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTL 59
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ S F L + +P +RF+S DG+ R RVLGG + INAG Y RA
Sbjct: 60 PTAYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANT 119
Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
+G WD LVN++Y WVE +V++P Q WQS + +E GVLP NGF+ DH
Sbjct: 120 KIFSASGIEWDMDLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEA 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT++ G+ D N RH + +LL +P+ L V +HASV KI+F + A GV+++D
Sbjct: 180 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGV-TAIGVIYKD 238
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R + E+IVSAG +GSPQLL+LSGVGP +L + NI VVL P VGQ +
Sbjct: 239 SNGTPHQAFVRG--EGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 296
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA--------XXXXXXXXXX 369
DNP N I + P P+E S + V+GIT Y S + F+
Sbjct: 297 HDNPRNFINILPPNPIEPSTVTVLGITS-NFYQCSFSSLPFSIPPFAFFPNPTYPLPNST 355
Query: 370 XXFIFEKIIGPVSTGHLELRT-RNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXX 428
K+ GP+S G + L + + P+V FNY+ DL CV G
Sbjct: 356 FAHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDA 415
Query: 429 XXXXXYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV 487
VE L + L + LP++ + E FCR+ V + WHYHGGC VG+V
Sbjct: 416 LKP-----YKVEDLPGIDGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVGEV 470
Query: 488 VDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
+D D++V G++ALRVVDGSTF YSP ++PQ +MLGRY+G +IL ER A+
Sbjct: 471 LDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQERSAA 521
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights Into
The Catalytic Mechanism
Length = 546
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 118/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
+NE+++S GA+ +P+LLMLSG+GPA HL H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
P+ Q I F +G V F F +
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
S G + LR+R+ D P V YF +PE D++ V G M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
+ T ++ + + T L+ + R T T++H G ++G V +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
+V GV LRV D S NP TVMM+G I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 118/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
+NE+++S GA+ +P+LLMLSG+GPA HL H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
P+ Q I F +G V F F +
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
S G + LR+R+ D P V YF +PE D++ V G M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
+ T ++ + + T L+ + R T T++H G ++G V +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
+V GV LRV D S NP TVMM+G I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
+NE+++S GA+ +P+LLMLSG+GPA HL H I V++D P VG+ + D+P + +
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
P+ Q I F +G V F F +
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
S G + LR+R+ D P V YF +PE D++ V G M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
+ T ++ + + T L+ + R T T +H G ++G V +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
+V GV LRV D S NP TVMM+G I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 125/499 (25%), Positives = 202/499 (40%), Gaps = 59/499 (11%)
Query: 49 DYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSA---ELADLSPT 103
D +++GGG+AG LAA LS+ ++ VLL+E G+ P +P+I N ++ A D
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 104 SPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP--YYA-------REAGWDGRLVNE 154
+ +Q + R R++GG +C++A Y R P + A R GWD L
Sbjct: 78 TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL--P 135
Query: 155 SYQWVEKKVVFRPPMQRWQ------------SALRDGLVEVGVLPYNGFTYDHLYGTKIG 202
+Q +E + + S L +E G H G IG
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 203 GT---IIDQNSQRHTAADLLEYANPSG---LTVLLHASVHKILFRNKGKARPVAHGVVFR 256
T + ++ +R TAAD G LT+L + V ++ + R + VV R
Sbjct: 196 VTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-QVRSLE--VVGR 252
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
+ AE A ++I++ AGAL SP LLM SG+GP D L A + ++D P +G+
Sbjct: 253 QGS-AEVFA-------DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304
Query: 317 MSDNPMNA-IFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAXXXXXXXXXXXXFIFE 375
+ D+ + A + PV S +Q ++ +Y+ S + E
Sbjct: 305 LQDHLLGAGNLYAARKPVPPSRLQH---SESMAYMRADSFTAAGQPEIVVGCGVAPIVSE 361
Query: 376 KIIGPV--STGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXX 433
P S L +P SV + PE R +
Sbjct: 362 SFPAPAAGSAYSLLFGITHPTSRGSVRIS---GPELGDRLIIDPAYLQTGRDRERFRRAL 418
Query: 434 YDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVD 489
+ ++ + LLP N++ ++ F +V+T H G C++GK VVD
Sbjct: 419 EASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVD 478
Query: 490 HDYKVLGVDALRVVDGSTF 508
+ ++ +D L VVD S
Sbjct: 479 ANLRLKALDNLFVVDASIM 497
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 119/596 (19%), Positives = 215/596 (36%), Gaps = 135/596 (22%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERG-DSPYGNPNITNSGS---FSAELAD 99
S++D++++GGGTAG +A L++N +VL++E G +P P IT S D
Sbjct: 5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 100 LSPTSPSQRFISEDGVV--STRARVLGGGTCIN--------AGFYTRAEPYYAREAGWDG 149
+ + R + + +TR + LGG + +N + + E + +E WD
Sbjct: 65 WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 150 RL--VNESYQWVEKKVVFRPPMQR----------------WQSALRDGLVEVGVLPYNGF 191
+ + +S + + ++ P +++ + R+ L +
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWK-SMGQP 183
Query: 192 TYDHLYGTKIGGTI--IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
+++Y ++ G D + + L N +T++ +++ +A
Sbjct: 184 LIENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLII---NEADRT 240
Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV A E L E+I+S G +P+LLMLSG+GP L H I ++D
Sbjct: 241 CKGVTVVTAAGNE----LNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 310 QPLVGQGMSDNP-------------MNAIFVP---------------SPVPVEVSLIQVV 341
VGQ + D+P M+ + + PV L+++V
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 342 GITQFGSYIEGAS-------------------------------GVNFAXXXXXXXXXXX 370
G + Y+E + G F
Sbjct: 357 GFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDH 416
Query: 371 XFIFEKIIGPVST-GHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
+ ++ P+S G + L + +P P++ N+F D+ +G
Sbjct: 417 LTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREG------------- 463
Query: 430 XXXXYDNM-SVETLLNMTAS-----MPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQ 483
YD + E ++ S MPL ++ + + D T +H G +
Sbjct: 464 IRFSYDLLFKGEGFKDLVESEYPWEMPL-------DSDKEMHRAVLDRCQTAFHPTGTAR 516
Query: 484 VGK-----VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
+ K VVD KV G+ LRV D S P Q +V +G I +E
Sbjct: 517 LSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 135/320 (42%), Gaps = 58/320 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERG---------DSPYGNPNITNSGSFSAE 96
+DY+V+G G AG +AA L+++ SVL+LE G ++P P + + F
Sbjct: 3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIF--- 59
Query: 97 LADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAGWDGRLV 152
D + T+ +Q + + R R+LGG + ++ R YA G +G
Sbjct: 60 --DWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 153 NESYQWVEKKVVFRPPMQR------------------------WQSALRDGLVEVGVLPY 188
+ Q+V K + PP + + L D ++
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 189 NGFTYDHLYGTK----IGGTIID-QNSQRHTAADLLEYANPS----GLTVLLHASVHKIL 239
F ++ GT I +I N QR +++ Y P+ L+VL++A V K++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLV 235
Query: 240 FRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHL 299
P V + + A K E+++SAG++G+P LL LSG+G + L
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSGIGDENDL 292
Query: 300 KAHNITVVLDQPLVGQGMSD 319
+ I +++ P VG+ +SD
Sbjct: 293 SSVGIDTIVNNPSVGRNLSD 312
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 373 IFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 432
+ +I PV+ G ++L T NP D P + Y D+ +Q
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF--------- 462
Query: 433 XYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK------ 486
+S + + P + + ++E + RD TI+H G +
Sbjct: 463 ----LSGQAWADFVI-RPFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 487 VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGR 525
VVD D KV GVD LR+VDGS ++P + Q + ++G+
Sbjct: 518 VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 62/327 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAE---LADLSP 102
YDYI+ GGG G +AA L++N VL++E+G +N G+ + +
Sbjct: 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE------SNDGAIIEDPNAYGQIFG 78
Query: 103 TSPSQRFISEDGVVSTR------ARVLGGGTCINAGFYTRAEPY----YAREAGWDGRLV 152
T+ Q +++ +++ R + LGG T IN +TR + + + G +G
Sbjct: 79 TTVDQNYLTVP-LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 153 NESYQWVEKKVVFRPPM-----------------------------QRWQ---SALRDGL 180
+ +++++K R P Q W AL + +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD--LLEYANPSGLTVLLHASVHKI 238
+GV F H G + +D+N R AA LL S L +L V K+
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 239 LFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADH 298
LF+ P A GV F + K+E++++AG+ SP +L SG+G
Sbjct: 258 LFKQTASG-PQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 299 LKAHNITVVLDQPLVGQGMSDNPMNAI 325
L N+T +LD P VG M D +
Sbjct: 313 LDQANVTQLLDLP-VGINMQDQTTTTV 338
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 476 WHYHGGC-----QVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVR 530
WH C ++G VVD KV G LRV+DGS P T + VM + M ++
Sbjct: 519 WHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSI----PPTQVSSHVMTIFYGMALK 574
Query: 531 I 531
+
Sbjct: 575 V 575
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 127/327 (38%), Gaps = 75/327 (22%)
Query: 49 DYIVIGGGTAGCPLAASLSQ--NASVLLLERGD------------SPYGNPNITNSGSFS 94
DYI+ GGG G AA L++ N SVL++E G + YG+ +S +
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI-FGSSVDHA 79
Query: 95 AELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNE 154
E +L+ + + S +G LGG T +N G +TR P+ A+ W+ NE
Sbjct: 80 YETVELATNNQTALIRSGNG--------LGGSTLVNGGTWTR--PHKAQVDSWETVFGNE 129
Query: 155 SYQWVEKKVVFRPPMQRWQS---------------------------------------A 175
+ W + + +R ++ A
Sbjct: 130 GWNW-DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 176 LRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD---LLEYANPSGLTVLLH 232
L + + GV F +G + + ++ R AA L Y P+ L VL
Sbjct: 189 LMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN-LQVLTG 247
Query: 233 ASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG 292
V K+L G P A GV F H Y K+E++++AG+ SP +L SG
Sbjct: 248 QYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG 302
Query: 293 VGPADHLKAHNITVVLDQPLVGQGMSD 319
+G L+ I V+D P VG + D
Sbjct: 303 IGMKSILEPLGIDTVVDLP-VGLNLQD 328
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 483 QVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRI 531
++G VVD+ +V GV LRV+DGS P T + VM + M ++I
Sbjct: 527 EMGGVVDNAARVYGVQGLRVIDGSI----PPTQMSSHVMTVFYAMALKI 571
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-------DSPYGNPNITNSGSFSAELAD 99
YDYI++G G G A LS+ VLLLERG Y P T+SG ++
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
Query: 100 L--SPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESY 156
L S + S F + ++GGGT +N Y + ++ GW N +
Sbjct: 63 LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA- 121
Query: 157 QWVEKKVVFRP----PMQRWQSALRDGLVEVGVL----PYNGFTY-------DHLYGTKI 201
+ K P P Q L V L YN T DH++G
Sbjct: 122 PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFG--- 178
Query: 202 GGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHK--------ILFRNKGKARPVAHGV 253
++A D L + L ++ + ++ N + GV
Sbjct: 179 -----------YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGV 227
Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA--HNITVVLDQP 311
D T + ++ PK +I+SAGA G+ ++L SG+GP D ++ N T P
Sbjct: 228 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 286
Query: 312 --------LVGQGMSDNP-MNAIFV 327
VG DNP +N +F
Sbjct: 287 PQNQWINLPVGMNAQDNPSINLVFT 311
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 480 GGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS 533
G VVD + KV G + L +VD + P NPQ T+M +IL+
Sbjct: 483 GSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 536
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-------DSPYGNPNITNSGSFSAELAD 99
YDYI++G G G A LS+ VLLLERG Y P T+SG ++
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
Query: 100 L--SPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESY 156
L S + S F + ++GGGT +N Y + ++ GW N +
Sbjct: 68 LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA- 126
Query: 157 QWVEKKVVFRP----PMQRWQSALRDGLVEVGVL----PYNGFTY-------DHLYGTKI 201
+ K P P Q L V L YN T DH++G
Sbjct: 127 PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFG--- 183
Query: 202 GGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHK--------ILFRNKGKARPVAHGV 253
++A D L + L ++ + ++ N + GV
Sbjct: 184 -----------YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGV 232
Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA--HNITVVLDQP 311
D T + ++ PK +I+SAGA G+ ++L SG+GP D ++ N T P
Sbjct: 233 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 291
Query: 312 --------LVGQGMSDNP-MNAIFV 327
VG DNP +N +F
Sbjct: 292 PQNQWINLPVGMNAQDNPSINLVFT 316
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 480 GGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS 533
G VVD + KV G + L +VD + P NPQ T+M +IL+
Sbjct: 488 GSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 541
>pdb|1B8S|A Chain A, Cholesterol Oxidase From Streptomyces Glu361gln Mutant
Length = 504
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D +H GGC +GK D +V G L V DGS S G NP T+
Sbjct: 430 TQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|1B4V|A Chain A, Cholesterol Oxidase From Streptomyces
pdb|1MXT|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase
(Streptomyces Sp. Sa-Coo)
pdb|1N1P|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.4 (Streptomyces Sp. Sa-Coo)
pdb|1N4U|A Chain A, Cholesterol Oxidase From Streptomyces @ Ph 4.5
(Streptomyces Sp. Sa- Coo)
pdb|1N4V|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ph 5.8
(Streptomyces Sp. Sa-Coo)
pdb|1N4W|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
7.3 (Streptomyces Sp. Sa-Coo)
pdb|2GEW|A Chain A, Atomic Resolution Structure Of Cholesterol Oxidase @ Ph
9.0 (Streptomyces Sp. Sa-Coo)
Length = 504
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D +H GGC +GK D +V G L V DGS S G NP T+
Sbjct: 430 TQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|3CNJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. F359w Mutant
(0.95a)
Length = 499
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D +H GGC +GK D +V G L V DGS S G NP T+
Sbjct: 428 TQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 484
Query: 522 MLGRYMGVRILSE 534
L RI+ +
Sbjct: 485 ALAERNVERIIKQ 497
>pdb|3GYI|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485d Mutant
(1.0a)
Length = 504
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D +H GGC +GK D +V G L V DGS S G +P T+
Sbjct: 430 TQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVDPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|3B3R|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant Bound To Glycerol (0.98a)
Length = 506
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D + GGC +GK D +V G L V DGS S G NP T+
Sbjct: 432 TQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 488
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 489 ALAERNVERIIKQDVTAS 506
>pdb|1CBO|A Chain A, Cholesterol Oxidase From Streptomyces His447asn Mutant
Length = 504
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D ++ GGC +GK D +V G L V DGS S G NP T+
Sbjct: 430 TQLKAFADDFC---YNPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|1CC2|A Chain A, Cholesterol Oxidase From Streptomyces His447gln Mutant
Length = 504
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D + GGC +GK D +V G L V DGS S G NP T+
Sbjct: 430 TQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|3B6D|A Chain A, Crystal Structure Of Streptomyces Cholesterol Oxidase
H447qE361Q Mutant (1.2a)
Length = 504
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D + GGC +GK D +V G L V DGS S G NP T+
Sbjct: 430 TQLKAFADDFC---YQPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|1IJH|A Chain A, Cholesterol Oxidase From Streptomyces Asn485leu Mutant
pdb|3GYJ|A Chain A, Cholesterol Oxidase From Streptomyces Sp. N485l Mutant
(0.92a)
Length = 504
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 462 TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVM 521
T L+ F D +H GGC +GK D +V G L V DGS S G P T+
Sbjct: 430 TQLKAFADDFC---YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVLPFVTIT 486
Query: 522 MLGRYMGVRILSERLASN 539
L RI+ + + ++
Sbjct: 487 ALAERNVERIIKQDVTAS 504
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 36/112 (32%)
Query: 48 YDYIVIGGGTAGCPLAA-SLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPS 106
YDY+VIGGG G A + + A VLL + + P+S
Sbjct: 43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDY----------------------VKPSSQG 80
Query: 107 QRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQW 158
++ G+ GGTC+N G + +YA G +L +++Y W
Sbjct: 81 TKW----GI---------GGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84
YDYI++G G G A L + N VL++E+ + GN
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 447 ASMPLNLLPKHSNTSTSLEQ---FCRDTVMT-IWHYHGGCQVGKVVDHDYKVLG 496
AS PL LLP++ N + +++Q DT ++ + HG C G V Y + G
Sbjct: 394 ASRPLRLLPQYRNATITVQQADDAYEDTALSPLITTHGFCVTGGVFTSIYDISG 447
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 31 PNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ 68
P S M +A+AA +D +VIGGG+ G A +Q
Sbjct: 16 PRGSHMASASAAGGQQSFDLLVIGGGSGGLACAKEAAQ 53
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 49 DYIVIGGGTAGCPLAASLSQNASVLLLERGDSP 81
DY+VIG G AG LS + V++LER P
Sbjct: 11 DYLVIGAGIAGASTGYWLSAHGRVVVLEREAQP 43
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 49 DYIVIGGGTAGCPLAASLS-QNASVLLLERGDSPYGNPNITNSGSFSAEL 97
D +++GGG G LA L+ + L+++ GD +P ++ G S EL
Sbjct: 28 DVLILGGGPVGMALALDLAHRQVGHLVVDAGDGTITHPKVSTIGPRSMEL 77
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNA-SVLLLERGDSP 81
+D IVIGGG G LA+ ++ VLLLER P
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 43 KPVSYYDYIVIGGGTAGCPLAASLSQN---ASVLLLERGDSPYGN 84
+P YD I++GGG G A L++N +V +LE+G GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 52 VIGGGTAGCPLAASL-SQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPS 106
VIG G G LA L + VLLLE+ D P G + F+ + T PS
Sbjct: 6 VIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPS 61
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 43 KPVSYYDYIVIGGGTAGCPLAASLSQN---ASVLLLERGDSPYGN 84
+P YD I++GGG G A L++N +V +LE+G GN
Sbjct: 17 EPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGGN 61
>pdb|2ZJO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3 Helicase With A
Novel Inhibitor
Length = 482
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 203 GTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAE 262
GT++DQ +L A P G + H ++ +I N G+ +
Sbjct: 149 GTVLDQAETAGARLVVLATATPPGSVTVPHPNIEEIALSNTGEIPFYGKAIPIETIKGGR 208
Query: 263 HIAYLRNGPK-NEIIVSAGALG 283
H+ + + K +E+ ALG
Sbjct: 209 HLIFCHSKKKCDELAAKLSALG 230
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 49 DYIVIGGGTAGCPLAASL---SQNASVLLLERGD 79
+Y++IGG AG A + +NA+V+ LE+G+
Sbjct: 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE 71
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 49 DYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPS 106
D +V+G G+AG A +S+ N V ++E+ SP G + FSA + P+
Sbjct: 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQ-LFSAMIV----RKPA 95
Query: 107 QRFISEDGV 115
F+ E GV
Sbjct: 96 HLFLDEIGV 104
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine
Oxidase, Crystal Form P3121
Length = 425
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79
YD IV+GGG +G A L+ VLLLE G+
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGE 34
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNASVLLL-------ERGDSPYGN 84
YD ++IGGG AG A LS+ +LL GD P G+
Sbjct: 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGD 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,925,353
Number of Sequences: 62578
Number of extensions: 668753
Number of successful extensions: 1862
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1770
Number of HSP's gapped (non-prelim): 100
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)