BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009241
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
Length = 594
Score = 568 bits (1463), Expect = e-161, Method: Compositional matrix adjust.
Identities = 285/534 (53%), Positives = 361/534 (67%), Gaps = 45/534 (8%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
S YDYIVIGGGTAGCPLAA+LSQN SVL+LERG P+ N N++ +F LAD+S +S
Sbjct: 61 SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120
Query: 106 SQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVF 165
SQ F+S DGV + RARVLGGG+CINAGFY+RA+ + + AGWD +LV ESY WVE+++V
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180
Query: 166 RPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPS 225
+P + WQ ALRD L+EVGV P+NGFTYDH+ GTKIGGTI D+ +RHTAA+LL YANP
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240
Query: 226 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 285
L VL++A+V KI+F G RP GV+F+D +H A L N +E+I+S+GA+GSP
Sbjct: 241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299
Query: 286 QLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ 345
Q+LMLSG+GP L+ I VVL+ VG+GM+DNPMN I VPS P+E SLIQ VGIT+
Sbjct: 300 QMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITK 359
Query: 346 FGSYIEGASGVNFAGGSPSP-----------------------RP--------------- 367
G Y+E ++G G SP RP
Sbjct: 360 MGVYVEASTGF---GQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLH 416
Query: 368 --YRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIE 425
+ G FI EK+ P+S GHL L N +D PSVTFNYFK P DLQRCV+ I + K++
Sbjct: 417 EAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVT 476
Query: 426 SKSFSKF-KYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQV 484
S F + + D +V +L+++ +NL PK N + S+ QFC+DTV+TIWHYHGGC V
Sbjct: 477 SNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLV 536
Query: 485 GKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
GKVV + KVLGVD LRV+DGSTF SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 537 GKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590
>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050
PE=2 SV=1
Length = 552
Score = 480 bits (1235), Expect = e-134, Method: Compositional matrix adjust.
Identities = 256/517 (49%), Positives = 334/517 (64%), Gaps = 21/517 (4%)
Query: 35 FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFS 94
F+ NAT YYDYI++GGGTAGCPLAA+LSQ+ VLLLERG PY PN+ + F
Sbjct: 41 FISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFL 100
Query: 95 AELADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAG--WDGRL 151
L D++ SP+Q FISE+GV + R RVLGG + INAGFY+RA+ + +G WD
Sbjct: 101 TTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSS 160
Query: 152 VNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQ 211
VN+SY+WVE+ +VFRP ++ WQ+A+RD L+EVGV P+NGFT +H GTKIGG+ D+ +
Sbjct: 161 VNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGR 220
Query: 212 RHTAADLLEYANPSGLTVLLHASVHKILFRNK---GKARPVAHGVVFRDATDAEHIAYLR 268
RH++ADLL YA S + V ++A+V ++L + + A GVV+RD H A +R
Sbjct: 221 RHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALIR 280
Query: 269 NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVP 328
+ + E+I+SAGALGSPQLL LSG+GP +L I V LDQP VG + DNP N I +
Sbjct: 281 D--RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIV 338
Query: 329 SPVPVEVSLIQVVGITQFGSYIEGASGV---------NFAGGSPSPRPYRGGFIFEKIIG 379
PVP+E SLIQVVG+T+ G+++E AS V F SP I EKI+G
Sbjct: 339 PPVPMENSLIQVVGVTEDGAFLEAASNVIPFASPLHSVFIRAPASPLYVPVTTIMEKILG 398
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSV 439
PVS G L L + + P V FNYF +P+DL+RCV G I +I+ S++ F M
Sbjct: 399 PVSIGLLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDF----MIR 454
Query: 440 ETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDA 499
E N LP + + FCR TV TIWHYHGG VGKVVD D KV+GV++
Sbjct: 455 EWFGNRRFRFVGAPLPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNS 514
Query: 500 LRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 536
LR+VDGSTF SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct: 515 LRLVDGSTFNISPGTNPQATLMMLGRYMGLKMLRERM 551
>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1
Length = 563
Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/530 (42%), Positives = 315/530 (59%), Gaps = 26/530 (4%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF + F +AT + YDY+++GGGT+GCPLAA+LS+ VL+LERG
Sbjct: 34 HDFSYLR-------FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 86
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ + F L + +P +RF+SEDG+ + R RVLGG + INAG Y RA
Sbjct: 87 PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANT 146
Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
Y A WD LVN++Y+WVE +VF+P Q WQS +E GV P +GF+ DH
Sbjct: 147 SIYSASGVDWDMDLVNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEA 206
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT+I G+ D RH A +LL N + L V +HASV KI+F N A GV++RD
Sbjct: 207 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 264
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R+ K E+IVSAG +G+PQLL+LSGVGP +L + NI VVL P VGQ +
Sbjct: 265 SNGTPHRAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 322
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAGGSPSPRPYRGG 371
DNP N I + P P+E +++ V+GI+ F S +F + P P
Sbjct: 323 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFSFFPSTSYPLPNSTF 382
Query: 372 FIF-EKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 429
F K+ GP+S G L L++ N +P+V FNY+ P DL CV G+ I +++ + +
Sbjct: 383 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDAL 442
Query: 430 SKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
+K +++ N+ +PL PK + E FCR++V + WHYHGGC VGKV+D
Sbjct: 443 KPYKVEDLPGIEGFNILG-IPL---PKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 498
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
D++V G+DALRVVDGSTF Y+P ++PQ +MLGRY+G++IL ER AS+
Sbjct: 499 GDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548
>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1
Length = 563
Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/545 (42%), Positives = 322/545 (59%), Gaps = 27/545 (4%)
Query: 6 LRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAAS 65
L+ S V +LAT HDF SF +AT + YDY+++GGGT+GCPLAA+
Sbjct: 20 LQYSEVHSLAT-TSDHDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAAT 71
Query: 66 LSQNASVLLLERGDSPYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLG 124
LS+ VL+LERG P PN+ + F L + +P +RF+SEDG+ + R RVLG
Sbjct: 72 LSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLG 131
Query: 125 GGTCINAGFYTRAEP--YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVE 182
G + INAG Y RA Y A WD LVN++Y+WVE +V++P Q WQS + +E
Sbjct: 132 GTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLE 191
Query: 183 VGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRN 242
GV P +GF+ DH GT+I G+ D RH A +LL N + L V +HASV KI+F N
Sbjct: 192 AGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSN 251
Query: 243 KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
A GV++RD+ H A++R+ K E+IVSAG +G+PQLL+LSGVGP +L +
Sbjct: 252 APGL--TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSL 307
Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGV 356
NI VVL P VGQ + DNP N I + P P+E +++ V+GI+ F S
Sbjct: 308 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPF 367
Query: 357 NFAGGSPSPRPYRGGFIF-EKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCV 414
F + P P F K+ GP+S G L L++ N +P+V FNY+ DL CV
Sbjct: 368 GFFPSASYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCV 427
Query: 415 QGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT 474
G+ I +++ + + +K +++ N+ +PL PK + E FCR++V +
Sbjct: 428 SGMKKIGELLSTDALKPYKVEDLPGVEGFNILG-IPL---PKDQTDDAAFETFCRESVAS 483
Query: 475 IWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
WHYHGGC VGKV+D D++V G++ALRVVDGSTF Y+P ++PQ +MLGRY+G++IL E
Sbjct: 484 YWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 543
Query: 535 RLASN 539
R AS+
Sbjct: 544 RSASD 548
>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1
Length = 576
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/531 (42%), Positives = 313/531 (58%), Gaps = 29/531 (5%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF + F+ +A + YDYI++GGGTAGCPLAA+LS N SVL+LERG
Sbjct: 35 HDFSYLE-------FVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTL 87
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ S F L + +P +RF+S DG+ + R RVLGG + INAG Y RA
Sbjct: 88 PTEYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANT 147
Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
+ + G WD LVN++Y WVE +VF+P Q WQ+ +EVG+LP NGF+ DHL
Sbjct: 148 SFFNQTGIEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLE 207
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT++ G+ D N RH + +LL +P+ L V +HA+V KI+F + A GV++ D
Sbjct: 208 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFSSDSSGV-TAIGVIYTD 266
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R E+I+SAG +GSPQLL+LSGVG +L + NI+VV P VGQ +
Sbjct: 267 SNGTTHQAFVRG--DGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYI 324
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA----GGSPSPR-PYRG-- 370
DNP N I + P P+E S + V+GIT Y S + F+ G P+P P
Sbjct: 325 YDNPRNFINILPPNPIEASTVTVLGITS-DFYQCSISSLPFSTAPFGFFPNPTYPLPNTT 383
Query: 371 -GFIFEKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKS 428
I K+ GP+S G + L+ T + P+VTFNY+ DL CV G+ I + + S +
Sbjct: 384 FAHIVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDA 443
Query: 429 FSKFKYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV 487
+K VE L + L + LP++ + E FCR+ V + WHYHGGC VG+V
Sbjct: 444 LKPYK-----VEDLPGIEGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVGEV 498
Query: 488 VDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
+D D++V G++ALRVVDGSTF +P ++PQ +MLGRYMG +IL ERLAS
Sbjct: 499 LDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLAS 549
>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1
Length = 573
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 218/529 (41%), Positives = 313/529 (59%), Gaps = 25/529 (4%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF SF+ +AT + YDYI++GGGTAGCPLAA+LS N SVL+LERG
Sbjct: 34 HDFSYL-------SFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSL 86
Query: 81 PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
P PN+ S F L + +P +RF+SEDG+ + R RVLGG + INAG Y RA
Sbjct: 87 PTEYPNLLISDGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANT 146
Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
+ + G WD LVN++Y+WVE +VF P Q WQ+ + +E G+LP NGF+ DHL
Sbjct: 147 SFFNQTGIEWDMDLVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLA 206
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT++ G+ D N RH + +LL +P+ L V + A+V KI+F + A GV++ D
Sbjct: 207 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVQAAVEKIIFSSNTSGV-TAIGVIYTD 265
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ H A++R + E+I+SAG +GSPQLL+LSGVGP +L + NI+VV P VGQ +
Sbjct: 266 SNGTTHQAFVRG--EGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYI 323
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAGGSPSPRPYRG- 370
DNP N I + P P+E S + V+GIT S +F + P P +
Sbjct: 324 YDNPRNFINILPPNPIEASTVTVLGITSDFYQCSISSLPFDTPPFSFFPTTSYPLPNQTF 383
Query: 371 GFIFEKIIGPVSTGHLELRTRNPNDT-PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 429
I K+ GP+S G + L + + P+V FNY+ DL CV G+ + +++ + +
Sbjct: 384 AHIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDAL 443
Query: 430 SKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
+K +++ N+ +PL P++ + E FCR++V + WHYHGGC VGKV+D
Sbjct: 444 EPYKVEDLPGIDGFNILG-IPL---PENQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 499
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
++V G++ALRVVDGSTF +P ++PQ +MLGRYMG++IL ER AS
Sbjct: 500 DGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQERSAS 548
>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1
Length = 574
Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust.
Identities = 221/544 (40%), Positives = 311/544 (57%), Gaps = 27/544 (4%)
Query: 7 RLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASL 66
+ S V +LA HDF + F+ NA + YDYI++GGGT+GCPLAA+L
Sbjct: 21 QYSEVHSLANTSSEHDFGYLK-------FVYNAVDLELEGSYDYIIVGGGTSGCPLAATL 73
Query: 67 SQNASVLLLERGDSPYGNPNITNSGSFSAELADLSP-TSPSQRFISEDGVVSTRARVLGG 125
S N SVL+LERG PN F+ L +P +RF+SEDG+ + R+R+LGG
Sbjct: 74 SANYSVLVLERGTIATEYPNTLTVDGFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGG 133
Query: 126 GTCINAGFYTRAEPYYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEV 183
T INAG Y RA + +G WD LVNE+Y+WVE +V++P Q WQS +E
Sbjct: 134 TTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVEDAIVYKPSNQSWQSITGTAFLEA 193
Query: 184 GVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNK 243
GV P NGF H GT++ G+ D + RH + +LL +P L V + A+V KI+F +
Sbjct: 194 GVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNKGDPDNLKVAVEAAVQKIIFSTE 253
Query: 244 GKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHN 303
A GVV+ D+ H A + K E+I+SAG LG+PQLL+LSGVGP +L + N
Sbjct: 254 SSGL-TAVGVVYTDSNGTSHRALVSG--KGEVILSAGTLGTPQLLLLSGVGPESYLTSLN 310
Query: 304 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAG--- 360
I+VV P VGQ ++DNP N I + P P+E S + V+GIT Y S + F
Sbjct: 311 ISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS-DFYQCSLSSLPFDTPPF 369
Query: 361 ----GSPSPRPYRG-GFIFEKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCV 414
+ P P + I K+ GP+S G L L++ N + P+V FNY +P DL CV
Sbjct: 370 SLFPTTSYPLPNQTFAHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCV 429
Query: 415 QGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT 474
G+ I + + + +K D++ N+ + LP++ + E+FCRDTV +
Sbjct: 430 SGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVAS 485
Query: 475 IWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
WHYHGG VGKV+D +++V G++ALRVVDGSTF +P ++PQ +MLGRY+G +I+ E
Sbjct: 486 YWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQE 545
Query: 535 RLAS 538
R AS
Sbjct: 546 RSAS 549
>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1
Length = 559
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 218/529 (41%), Positives = 305/529 (57%), Gaps = 31/529 (5%)
Query: 21 HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
HDF + F+ NAT YDYIVIGGGT+GCPLAA+LS+ VLLLERG
Sbjct: 34 HDFSYLK-------FVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTI 86
Query: 81 PYGNPNITNSGSFSAELADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
PN + F+ L +P +RF+SEDG+ + RAR+LGG T INAG Y RA
Sbjct: 87 ATEYPNTLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANI 146
Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
+ + G WD LVN++Y+WVE +V +P Q WQS + +G +E G+LP NGF+ DH
Sbjct: 147 SFYSQTGIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEA 206
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
GT++ G+ D N RH A +LL +P+ L V + ASV KILF + + A GV++ D
Sbjct: 207 GTRLTGSTFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFSSN-TSNLSAIGVIYTD 265
Query: 258 ATDAEHIAYLR-NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
+ H A++R NG E+IVSAG +G+PQLL+LSGVGP +L + NITVV P VGQ
Sbjct: 266 SDGNSHQAFVRGNG---EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQF 322
Query: 317 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRG------ 370
+ +NP N I P P+E S++ V+GI + Y S + F+ S P
Sbjct: 323 LYNNPRNFINNFPPNPIEASVVTVLGI-RSDYYQVSLSSLPFSTPPFSLFPTTSYPLPNS 381
Query: 371 --GFIFEKIIGPVSTGHLELRTRNP-NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESK 427
I ++ GP+S G + L + + P++ FNY+ DL CV G+ + ++ +K
Sbjct: 382 TFAHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTK 441
Query: 428 SFSKFKYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK 486
+ +K +L + L + LP++ S E FC D V + WHYHGG VGK
Sbjct: 442 ALEPYK-----ARDVLGIDGFNYLGVPLPENQTDDASFETFCLDNVASYWHYHGGSLVGK 496
Query: 487 VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
V+D ++V+G+ ALRVVD STF Y P ++PQ +MLGRY+G++IL ER
Sbjct: 497 VLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 157/561 (27%), Positives = 234/561 (41%), Gaps = 125/561 (22%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQNASV--LLLERGDS--------PYGNPNITNSGSFS 94
S +DYIV+GGG+AGC LAA LS+N SV L+E G P G +T +G +
Sbjct: 2 TSGFDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMT-TGPHT 60
Query: 95 AELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREA--GWD 148
+L T P Q+ + + + R+LGGG+ INA +TR P +A E GW
Sbjct: 61 WDLL----TEP-QKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWS 115
Query: 149 GRLVNESYQWVEKKVVFR------------------PPMQRWQSALRDGLVEVGVLPYN- 189
R V + + E VF P R A E+G LPYN
Sbjct: 116 FRDVQKYFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSR---AFVQSCQEMG-LPYNP 171
Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYA-NPSGLTVLLHASVHKILFRNKGKARP 248
F G I I N + TA L A LTV+ A V KI+F
Sbjct: 172 DFNGASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVF-------- 223
Query: 249 VAHGVVFRDATDAEHIAYLRNGPKN------EIIVSAGALGSPQLLMLSGVGPADHLKAH 302
+ T A + Y+ NG N EI+V+AGA+G+P+L+MLSGVGPA HL+ +
Sbjct: 224 --------NGTRATGVQYIANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLREN 275
Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGI----------TQFGS---- 348
I VV D P VG+ + D+ + + + + + S + + T F S
Sbjct: 276 GIPVVQDLPGVGENLQDH--FGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVA 333
Query: 349 ----------YIEGASGV-----NF-------AGGSPSPRPYRGGFIFEKIIGPVSTGHL 386
Y + +SGV +F AG + P+ G + ++ P S G +
Sbjct: 334 SNVVEGGAFWYSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTV 393
Query: 387 ELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMT 446
LR+ +P P V N+ +P DL+ +G+ ++ S K + +
Sbjct: 394 RLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKH------IRKTCFFS 447
Query: 447 ASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRV 502
P T + R+ T +H C++G+ VVD KV G++ +R+
Sbjct: 448 GKQP---------TMQMYRDYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLEGIRI 498
Query: 503 VDGSTFYYSPGTNPQATVMML 523
D S G+N A +M+
Sbjct: 499 CDSSVMPSLLGSNTNAATIMI 519
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 150/549 (27%), Positives = 234/549 (42%), Gaps = 104/549 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNAS--VLLLERG--------DSPYGNPNITNSGSFSAEL 97
YDYI++G G+AGC LA LS + S V LLE G P G ++NS +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 98 ADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA--EPYYAREAG----WDGRL 151
T+P Q ++ + R + LGG + INA Y R + Y+A E W
Sbjct: 62 Q----TAPQQN-LNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYR 116
Query: 152 VNESYQWVEKKVVFRPPMQ------------RWQSALRDGLVEVGV---LPYNGFTYDHL 196
E ++ +E F ++ + L V+ G+ + +NG ++
Sbjct: 117 ALELFKRLECNQRFDKSEHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNG-DFNGE 175
Query: 197 YGTKIGG-TIIDQNSQRHTAADLLEYANPS--GLTVLLHASVHKILFRNKGKARPVAHGV 253
Y +G + +N QR ++A + S L ++ A KILF ++ A GV
Sbjct: 176 YQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFEDRK-----AVGV 230
Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLV 313
+ + G E+++S GA+G+P LLMLSGVG A LK H +++V D P V
Sbjct: 231 SYIKKNMHHQVKTTSGG---EVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEV 287
Query: 314 GQGMSDN----PMNAIFVPSPVPVEVSLIQVVGITQFGSYI---EG--ASGVNFAGG--S 362
G+ + D+ M A P+ V +S I G++ SY+ EG S V +GG
Sbjct: 288 GKNLQDHLDITLMCAANSREPIGVALSFIP-RGVSGLFSYVFKREGFLTSNVAESGGFVK 346
Query: 363 PSPRPYRGGFIF-----------EKIIG------------PVSTGHLELRTRNPNDTPSV 399
SP R F KI G P S G + L++ NP P +
Sbjct: 347 SSPDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTLHICDLLPKSRGRIGLKSANPLQPPLI 406
Query: 400 TFNYFKEPEDLQRCVQGISTIEKIIESKSFSK-FKYDNMSVETLLNMTASMPLNLLPKHS 458
NY + ED++ + GI I+++ S +K FK++ + + +
Sbjct: 407 DPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKHEVVPGQAV---------------- 450
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFYYSPGT 514
T + + R TI+H G C++GK VVD K+ G+ +RVVD S +
Sbjct: 451 KTDDEIIEDIRRRAETIYHPVGTCRMGKDPASVVDPCLKIRGLANIRVVDASIMPHLVAG 510
Query: 515 NPQATVMML 523
N A +M+
Sbjct: 511 NTNAPTIMI 519
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 126 bits (316), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 161/561 (28%), Positives = 238/561 (42%), Gaps = 124/561 (22%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNAS--VLLLERG--------DSPYGNPNITNSGSFSAEL 97
YDYI++G G+AGC LA LS + S V LLE G P G ++NS +
Sbjct: 2 YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61
Query: 98 ADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA--EPYYARE-AGWDGRLVNE 154
T+P Q+ ++E + R + LGG + INA Y R E Y A E AG E
Sbjct: 62 Q----TAP-QQHLNERSLFWPRGKTLGGSSSINAMVYIRGHEEDYQAWEQAG------GE 110
Query: 155 SYQWVEKKVVFRP--PMQRWQ-------------SALRD------GLVEVGV---LPYNG 190
+ W +F+ QR+ S L+D V+ G+ + +NG
Sbjct: 111 YWGWKRAFALFKKLEHNQRFDKSNYHGTDGELAVSDLKDLNPLSKSFVQAGMEAKISFNG 170
Query: 191 -FTYDHLYGTKIGGTIIDQNSQRHTAA-----DLLEYANPSGLTVLLHASVHKILFRNKG 244
F H G + ++ QR ++A D+++ N L ++ A K+LF ++
Sbjct: 171 DFNGAHQEGVGFY-QVTQKHGQRWSSARAFLHDVIDRPN---LDIITEAHATKVLFEDRK 226
Query: 245 KARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNI 304
A GV + + + +G E+I+S GA+ +PQLLMLSGVG A LK H I
Sbjct: 227 -----AVGVSYIQKNMHQQVKTTDSG---EVILSLGAVNTPQLLMLSGVGAAAELKEHGI 278
Query: 305 TVVLDQPLVGQGMSDN----PMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASG----- 355
+V D P VG+ + D+ M A +P+ V S I G+ SYI G
Sbjct: 279 ALVHDLPEVGKNLQDHLDITLMCAANSRTPIGVAFSFIP-RGLVGLFSYIFKRKGFLTSN 337
Query: 356 VNFAGG--SPSPRPYRGGFIF-----------EKI------------IGPVSTGHLELRT 390
V +GG SP R F KI + P S G + L++
Sbjct: 338 VAESGGFVKSSPERDRPNLQFHFLPTYLKDHGRKIAVGYGYTLHICDLLPKSRGRIGLKS 397
Query: 391 RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSK-FKYDNMSVETLLNMTASM 449
NP D P + NY +PED++ + GI I ++ S +K FK +
Sbjct: 398 ANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAPSMAKHFKRE-------------- 443
Query: 450 PLNLLPKHSNTS-TSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVD 504
++P + TS + R TI+H G C++GK VVD +V G+ +RVVD
Sbjct: 444 ---IVPGPAVTSDDEIVADIRSRAETIYHPVGTCRMGKDPASVVDPCLQVRGLRNIRVVD 500
Query: 505 GSTFYYSPGTNPQATVMMLGR 525
S N A +M+
Sbjct: 501 ASIMPNLVAGNTNAPTIMIAE 521
>sp|B2JS89|BETA_BURP8 Choline dehydrogenase OS=Burkholderia phymatum (strain DSM 17167 /
STM815) GN=betA PE=3 SV=1
Length = 572
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 156/559 (27%), Positives = 231/559 (41%), Gaps = 107/559 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LA L+++ +VLLLE G Y A LA
Sbjct: 6 YDYIIIGAGSAGNVLATRLTEDRDVTVLLLEAGGPDY---RFDFRTQMPAALAYPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ 157
+ + + + F++ + R + LGG + IN Y R GW R E++
Sbjct: 63 YNWAYETDPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAL--DYDGWAERKGLENWT 120
Query: 158 WVEKKVVFRPPMQRWQSA---------------------LRDGLVEVGVLPYNGFTYDHL 196
+++ FR R A L + +VE GV T D L
Sbjct: 121 YLDCLPYFRKAETRDAGANDYHGGDGPVHVTTSKRGVNPLFEAMVEAGVQAGYPRT-DDL 179
Query: 197 YGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPV 249
G + G T+ + TA L+ A P LT++ +A+ +ILF K
Sbjct: 180 NGYQQEGFGPMDRTVTANGRRASTARGYLDQARPRPNLTIVTYATTDRILFSGK-----R 234
Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
A GVV+ D A+ A+ R E+++ +GA+ SPQ+L SGVGP L+ +I VVLD
Sbjct: 235 AQGVVYLDGQ-AQITAHARR----EVLLCSGAIASPQILQRSGVGPGGWLRDLDIPVVLD 289
Query: 310 QPLVGQGMSDN-PMNAIF-VPSPVPVEVSLI----QVVGITQF--GSYIEGASGVNFAGG 361
P VGQ + D+ M + PV + +L+ +GI G+ I GAS AGG
Sbjct: 290 LPGVGQNLQDHLEMYMQYECKEPVSLYPALLLRNQPAIGIEWMLKGTGI-GASNHFEAGG 348
Query: 362 -----SPSPRP------------YRGGFI-----FEKIIGPV---STGHLELRTRNPNDT 396
P P Y G F+ +G + S G ++LR+R+P +
Sbjct: 349 FIRTRDDDPWPNIQYHFLPVAINYNGTNAIKMHGFQAHVGSMRSPSRGRVKLRSRDPREH 408
Query: 397 PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPK 456
PS+ FNY E D + I +II + +F+ +S L A
Sbjct: 409 PSILFNYMAEALDWREFRDAIRITREIIAQPALDRFRGRELSPGAELQSDA--------- 459
Query: 457 HSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSP 512
++ F R T +H C +G VVD + +V G++ LRVVD S
Sbjct: 460 ------QIDAFVRARAETAYHPSCSCAMGYDDMAVVDGEGRVHGLEGLRVVDASIMPRIT 513
Query: 513 GTNPQATVMMLGRYMGVRI 531
N A +ML + RI
Sbjct: 514 TGNLNAPTIMLAEKIADRI 532
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 119 bits (298), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 142/563 (25%), Positives = 222/563 (39%), Gaps = 112/563 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+IG G+AG LAA L+++A SVLLLE G Y + A LA
Sbjct: 6 FDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGGPDY---RLDFRTQMPAALAYPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE------------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 63 YNWAYLTEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEGWSKLKGLENWTYA 122
Query: 139 ---PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDH 195
PYY + D + Y V P + L +VE GV T D
Sbjct: 123 DCLPYYKKAETRD--IGGNDYHGDHGPVSVATPKDN-NNVLFHAMVEAGVQAGYPRT-DD 178
Query: 196 LYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARP 248
L G + G T+ + TA L+ A LT++ HA +KILF K
Sbjct: 179 LNGYQQEGFGPMDRTVTKNGRRSSTARGYLDMAKERPNLTIITHAMTNKILFNGK----- 233
Query: 249 VAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL 308
A GV + D + + E+++ AGA+ SPQ+L SGVG + LK+ +I VV
Sbjct: 234 QAIGVEYIQGADKRDLKKVM--ANKEVLLCAGAIASPQILQRSGVGESTFLKSMDIDVVH 291
Query: 309 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPY 368
D P VG+ + D+ + PV + + + GA + G + +
Sbjct: 292 DLPGVGENLQDHLEMYLQYKCKQPVSL----YPALKWYNQPAIGAEWLFLGKGIGASNQF 347
Query: 369 R-GGFI--------------------------------FEKIIGPV---STGHLELRTRN 392
GGFI F+ +G + S GH++L++++
Sbjct: 348 EAGGFIRSSDEFEWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGHIKLKSKD 407
Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN 452
P + PS+ FNY +D Q I +I+ + ++ + +S
Sbjct: 408 PFEHPSILFNYMSTEQDWQEFRAAIRITREIMHQPALDPYRGEEISP------------- 454
Query: 453 LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTF 508
K +T T L+ F R+ T +H C++G+ VVDH +V G+ LRVVD S
Sbjct: 455 --GKQLSTDTQLDDFVRNHAETAYHPSCSCKMGEDDMAVVDHQGRVHGLQGLRVVDASIM 512
Query: 509 YYSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 513 PLIITGNLNATTIMMAEKIADQI 535
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 137/560 (24%), Positives = 224/560 (40%), Gaps = 113/560 (20%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS++ SV+++E G S G P I + S L D
Sbjct: 5 DFVIIGSGSAGSAMAYRLSEDGKHSVIVIEFGGSDIG-PLIQMPSALSIPLNMSLYDWGF 63
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
S + + + + R +V+GG + IN Y R PY+
Sbjct: 64 ASEPEPHLGGRVLATPRGKVIGGSSSINGMVYVRGHARDFDHWAEEGATGWGFADVLPYF 123
Query: 142 AR-------EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYD 194
R E GW G Q +K + L VE G T D
Sbjct: 124 KRMEDNDGGEDGWRGHGGPLHVQRGSRK-----------NPLYGAFVEAGRQAGFELTDD 172
Query: 195 HLYGTKIGGTIIDQN---SQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
+ + G ++Q +R +AA L+ A L+ +++ N+ A
Sbjct: 173 YNGSKQEGFGPMEQTISGGRRWSAASAYLKPALKRKNVSLVKGFARRVIIENQ-----RA 227
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV + + R E+IV+A ++ SP++LMLSG+GPA+HL+ + I VV D+
Sbjct: 228 IGVEIEAHKQIQVVKARR-----EVIVAASSINSPKILMLSGIGPAEHLRENGIAVVADR 282
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEVSLI------QVVGIT--------------QFGSYI 350
P VG+ + D+ I S P+ ++ + ++G + +++
Sbjct: 283 PGVGRNLQDHMELYIQQESTKPITLNSVLNPFSKALIGAQWLFFKSGLGATNHFEAAAFV 342
Query: 351 EGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPS 398
+GV++ P+ Y G F+ +GP+ S G + LR+ +P P
Sbjct: 343 RSRAGVDYPDIQYHFIPAAVRYDGKAAAKSHGFQAHVGPMRSKSRGSVTLRSPDPKAKPV 402
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY P+D I +I +F F+ +S + H
Sbjct: 403 IRFNYMSHPDDWTEFRHCIRLTREIFGQSAFDAFRGQEISPGS---------------HV 447
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSP 512
+ L+ F RD + +H G C++G+ VVD + +V+GVD LRV D S F
Sbjct: 448 QSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPECRVIGVDGLRVADSSIFPRVT 507
Query: 513 GTNPQATVMMLGRYMGVRIL 532
N A +M G IL
Sbjct: 508 NGNLNAPSIMTGEKASDHIL 527
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 140/562 (24%), Positives = 228/562 (40%), Gaps = 113/562 (20%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----DLSP 102
DY+++G G+AG +A LS++ SV+++E G S +G P I + + ++ +
Sbjct: 4 DYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFG-PFIQMPAALAWPMSMKRYNWGY 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
S + + + + R +V+GG + IN Y R PY+
Sbjct: 63 LSEPEPNLDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAYADVLPYF 122
Query: 142 AR-------EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYD 194
R E GW G + V++ V P L ++ G T D
Sbjct: 123 KRMEHSHGGEEGWRG---TDGPLHVQRGPVSNP--------LFHAFIQAGAQAGFELTDD 171
Query: 195 HLYGTKIGGTIIDQ---NSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
+ + G +++Q N +R +AA+ L+ A G L++ K++ N G+A
Sbjct: 172 YNGSKQEGFGLMEQTIHNGRRWSAANAYLKPALKRGNVTLVNGFARKVIIEN-GRAV--- 227
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV E + R E+IVSA + SP+LLMLSG+GPA HLK I V D+
Sbjct: 228 -GVEIERRGRVETVKANR-----EVIVSASSFNSPKLLMLSGIGPAAHLKDMGIEVKADR 281
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEV-----SLIQVVGITQF---------GSYIEGASGV 356
P VG + D+ S PV + Q V Q+ + E + +
Sbjct: 282 PGVGANLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLLSKGGLGASNQFEACAFL 341
Query: 357 NFAGGSPSPR----------PYRGGFI-----FEKIIG---PVSTGHLELRTRNPNDTPS 398
A G P Y G F+ +G S G++ LR+ +P+D P
Sbjct: 342 RSAPGLKQPDIQYHFLPVAISYDGKAAAKSHGFQAHVGYNLSKSRGNVTLRSADPHDDPV 401
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY PED ++ + +I K+F F+ ++ N+
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFR--GPEIQPGENI------------- 446
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSP 512
T ++ F R+ + + +H G C++G VVD + +V+GV+ LRV D S F +
Sbjct: 447 ETDEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIFPHVT 506
Query: 513 GTNPQATVMMLGRYMGVRILSE 534
N +M G IL +
Sbjct: 507 YGNLNGPSIMTGEKAADHILGK 528
>sp|A4JJG6|BETA_BURVG Choline dehydrogenase OS=Burkholderia vietnamiensis (strain G4 /
LMG 22486) GN=betA PE=3 SV=1
Length = 566
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 144/564 (25%), Positives = 215/564 (38%), Gaps = 117/564 (20%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+ G G+AG LA L++ N +VLLLE G Y A LA
Sbjct: 6 YDYIICGAGSAGNVLATRLTEDPNVTVLLLEAGGPDY---RFDFRTQMPAALAYPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ 157
+ + + + + + R + LGG + IN Y R W E +
Sbjct: 63 YNWAYETDPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNAL--DYDNWSTHQGLERWT 120
Query: 158 WVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGFTYDHL 196
+++ FR R + L + +VE GV T D L
Sbjct: 121 YLDCLPYFRKAETRDVGPNDYHGGDGPVSVTTSKPGANPLFEAMVEAGVQAGYPRT-DDL 179
Query: 197 YGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPV 249
G + G T+ + + TA L+ A L ++ HA +ILF
Sbjct: 180 NGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKTRPNLEIVTHALADRILF--------- 230
Query: 250 AHGVVFRDATDAEHIAYLRNGPK------NEIIVSAGALGSPQLLMLSGVGPADHLKAHN 303
D A +AYLR + E++V +GA+ SPQLL SGVGP LK +
Sbjct: 231 -------DGKRASGVAYLRGSERATAHARREVLVCSGAIASPQLLQRSGVGPGAWLKELD 283
Query: 304 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPV------------EVSLIQVVGITQFGS--Y 349
I +VLD P VGQ + D+ I PV ++ L ++ T G+ +
Sbjct: 284 IPIVLDLPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNH 343
Query: 350 IEGASGVNFAGGSPSPR----------PYRGGFI-----FEKIIGPV---STGHLELRTR 391
E + P P Y G F+ +G + S G ++LR+R
Sbjct: 344 FEAGGFIRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSR 403
Query: 392 NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPL 451
+PND PS+ FNY E D + I +I+ + +++ LN A
Sbjct: 404 DPNDHPSILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRE------LNPGAD--- 454
Query: 452 NLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGST 507
+ L+ F R T +H C++G VVD + +V G+D LRVVD S
Sbjct: 455 ------CRSDKELDTFVRARAETAFHPSCSCKMGYDDMAVVDDEGRVHGLDGLRVVDASI 508
Query: 508 FYYSPGTNPQATVMMLGRYMGVRI 531
N A +M+ + RI
Sbjct: 509 MPIITTGNLNAPTIMIAEKIADRI 532
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 222/554 (40%), Gaps = 101/554 (18%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS+N SV+++E G P P I + S E D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSENGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
+S + I +V+ R +VLGG + IN Y R PY+
Sbjct: 63 SSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYF 122
Query: 142 AR----EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
R + G +G +V++ P + A EV YNG +
Sbjct: 123 KRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEV-TDDYNGEKQEGF- 180
Query: 198 GTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256
+ TI N +R +AA+ L+ A L+ KI+ K A GV
Sbjct: 181 -GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGK-----RAVGVEIE 232
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
I R E+I++A ++ SP+LLMLSG+GPA HLK H I +V D+P VGQ
Sbjct: 233 AGRTFSTIRARR-----EVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQN 287
Query: 317 MSDN-----------PMNA-----IFVPSPVPVEVSLIQV-VGIT---QFGSYIEGASGV 356
+ D+ P+ +F + + VE L + G T + +++ +GV
Sbjct: 288 LQDHLEVYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGV 347
Query: 357 NFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSVTFNYF 404
+ P Y G F+ +GP+ S G + LR+ NP + P + FNY
Sbjct: 348 EYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYM 407
Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
+D + +I +F ++ + H T +
Sbjct: 408 SHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGA---------------HVQTDDEI 452
Query: 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
+ F R+ V + +H G C++G VVD + +V+GV+ LRV D S F N
Sbjct: 453 DNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNG 512
Query: 519 TVMMLGRYMGVRIL 532
+M+G IL
Sbjct: 513 PSIMVGEKASDHIL 526
>sp|B0V945|BETA_ACIBY Choline dehydrogenase OS=Acinetobacter baumannii (strain AYE)
GN=betA PE=3 SV=1
Length = 552
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/562 (25%), Positives = 225/562 (40%), Gaps = 104/562 (18%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA---- 98
+ YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 3 IKEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDY---RLDFRTQMPAALAYPLQ 59
Query: 99 ----DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 60 GRRYNWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENW 119
Query: 139 ------PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
PYY + D + Y V P + + L +VE GV T
Sbjct: 120 TYADCLPYYKKAETRD--IGGNDYHGDSGPVSVATP-KNGNNVLFHAMVEAGVQAGYPRT 176
Query: 193 YDHLYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G T+ + + TA L+ A LT+L HA+ +KILF K
Sbjct: 177 -DDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILFNQK-- 233
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV + D ++ R K E+++ AGA+ SPQ+L SGVG + LK+ +I
Sbjct: 234 ---QAIGVEYIIGADQNNLQ--RALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDID 288
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS---------------LIQVVGI---TQF- 346
VV D P VG+ + D+ + PV + L GI QF
Sbjct: 289 VVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPAIGAEWLFNGTGIGASNQFE 348
Query: 347 -GSYIEGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNP 393
G +I + + P Y G F+ +G + S G ++L++++P
Sbjct: 349 AGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIKLKSKDP 408
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
PS+ FNY +D + I +I+ + ++ D +S
Sbjct: 409 FAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISP-------------- 454
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
KH T L+ F R+ T +H C++G+ VVD +V G++ LRVVD S
Sbjct: 455 -GKHLQTDAELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMP 513
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 514 LIITGNLNATTIMIAEKIADQI 535
>sp|B0VST3|BETA_ACIBS Choline dehydrogenase OS=Acinetobacter baumannii (strain SDF)
GN=betA PE=3 SV=1
Length = 552
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/562 (25%), Positives = 225/562 (40%), Gaps = 104/562 (18%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA---- 98
+ YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 3 IKEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDY---RLDFRTQMPAALAYPLQ 59
Query: 99 ----DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 60 GRRYNWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENW 119
Query: 139 ------PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
PYY + D + Y V P + + L +VE GV T
Sbjct: 120 TYADCLPYYKKAETRD--IGGNDYHGDSGPVSVATP-KNGNNVLFHAMVEAGVQAGYPRT 176
Query: 193 YDHLYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G T+ + + TA L+ A LT+L HA+ +KILF K
Sbjct: 177 -DDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILFNQK-- 233
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV + D ++ R K E+++ AGA+ SPQ+L SGVG + LK+ +I
Sbjct: 234 ---QAIGVEYIIGADQNNLQ--RALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDID 288
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS---------------LIQVVGI---TQF- 346
VV D P VG+ + D+ + PV + L GI QF
Sbjct: 289 VVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPAIGAEWLFNGTGIGASNQFE 348
Query: 347 -GSYIEGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNP 393
G +I + + P Y G F+ +G + S G ++L++++P
Sbjct: 349 AGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIKLKSKDP 408
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
PS+ FNY +D + I +I+ + ++ D +S
Sbjct: 409 FAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISP-------------- 454
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
KH T L+ F R+ T +H C++G+ VVD +V G++ LRVVD S
Sbjct: 455 -GKHLQTDAELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMP 513
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 514 LIITGNLNATTIMIAEKIADQI 535
>sp|B2HV79|BETA_ACIBC Choline dehydrogenase OS=Acinetobacter baumannii (strain ACICU)
GN=betA PE=3 SV=1
Length = 552
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/562 (25%), Positives = 225/562 (40%), Gaps = 104/562 (18%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA---- 98
+ YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 3 IKEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDY---RLDFRTQMPAALAYPLQ 59
Query: 99 ----DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 60 GRRYNWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENW 119
Query: 139 ------PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
PYY + D + Y V P + + L +VE GV T
Sbjct: 120 TYADCLPYYKKAETRD--IGGNDYHGDSGPVSVATP-KNGNNVLFHAMVEAGVQAGYPRT 176
Query: 193 YDHLYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G T+ + + TA L+ A LT+L HA+ +KILF K
Sbjct: 177 -DDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILFNQK-- 233
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV + D ++ R K E+++ AGA+ SPQ+L SGVG + LK+ +I
Sbjct: 234 ---QAIGVEYIIGADQNNLQ--RALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDID 288
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS---------------LIQVVGI---TQF- 346
VV D P VG+ + D+ + PV + L GI QF
Sbjct: 289 VVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPAIGAEWLFNGTGIGASNQFE 348
Query: 347 -GSYIEGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNP 393
G +I + + P Y G F+ +G + S G ++L++++P
Sbjct: 349 AGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIKLKSKDP 408
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
PS+ FNY +D + I +I+ + ++ D +S
Sbjct: 409 FAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISP-------------- 454
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
KH T L+ F R+ T +H C++G+ VVD +V G++ LRVVD S
Sbjct: 455 -GKHLQTDAELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMP 513
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 514 LIITGNLNATTIMIAEKIADQI 535
>sp|B7I895|BETA_ACIB5 Choline dehydrogenase OS=Acinetobacter baumannii (strain AB0057)
GN=betA PE=3 SV=1
Length = 552
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/562 (25%), Positives = 225/562 (40%), Gaps = 104/562 (18%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA---- 98
+ YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 3 IKEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDY---RLDFRTQMPAALAYPLQ 59
Query: 99 ----DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 60 GRRYNWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENW 119
Query: 139 ------PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
PYY + D + Y V P + + L +VE GV T
Sbjct: 120 TYADCLPYYKKAETRD--IGGNDYHGDSGPVSVATP-KNGNNVLFHAMVEAGVQAGYPRT 176
Query: 193 YDHLYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G T+ + + TA L+ A LT+L HA+ +KILF K
Sbjct: 177 -DDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILFNQK-- 233
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV + D ++ R K E+++ AGA+ SPQ+L SGVG + LK+ +I
Sbjct: 234 ---QAIGVEYIIGADQNNLQ--RALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDID 288
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS---------------LIQVVGI---TQF- 346
VV D P VG+ + D+ + PV + L GI QF
Sbjct: 289 VVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPAIGAEWLFNGTGIGASNQFE 348
Query: 347 -GSYIEGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNP 393
G +I + + P Y G F+ +G + S G ++L++++P
Sbjct: 349 AGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIKLKSKDP 408
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
PS+ FNY +D + I +I+ + ++ D +S
Sbjct: 409 FAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISP-------------- 454
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
KH T L+ F R+ T +H C++G+ VVD +V G++ LRVVD S
Sbjct: 455 -GKHLQTDAELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMP 513
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 514 LIITGNLNATTIMIAEKIADQI 535
>sp|B7GYG5|BETA_ACIB3 Choline dehydrogenase OS=Acinetobacter baumannii (strain
AB307-0294) GN=betA PE=3 SV=1
Length = 552
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 145/562 (25%), Positives = 225/562 (40%), Gaps = 104/562 (18%)
Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA---- 98
+ YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 3 IKEYDYIIIGAGSAGNVLAARLTEDKDTTVLLLEAGGPDY---RLDFRTQMPAALAYPLQ 59
Query: 99 ----DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 60 GRRYNWAYLTDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLEQWATHKGLENW 119
Query: 139 ------PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
PYY + D + Y V P + + L +VE GV T
Sbjct: 120 TYADCLPYYKKAETRD--IGGNDYHGDSGPVSVATP-KNGNNVLFHAMVEAGVQAGYPRT 176
Query: 193 YDHLYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G T+ + + TA L+ A LT+L HA+ +KILF K
Sbjct: 177 -DDLNGYQQEGFGPMDRTVTPKGRRSSTARGYLDMAKGRPNLTILTHATTNKILFNQK-- 233
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV + D ++ R K E+++ AGA+ SPQ+L SGVG + LK+ +I
Sbjct: 234 ---QAIGVEYIIGADQNNLQ--RALVKREVLLCAGAIASPQILQRSGVGQSTFLKSMDID 288
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS---------------LIQVVGI---TQF- 346
VV D P VG+ + D+ + PV + L GI QF
Sbjct: 289 VVHDLPGVGENLQDHLEMYLQYKCKQPVSLYPALKWYNQPAIGAEWLFNGTGIGASNQFE 348
Query: 347 -GSYIEGASGVNFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNP 393
G +I + + P Y G F+ +G + S G ++L++++P
Sbjct: 349 AGGFIRSSDEFKWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRSPSRGRIKLKSKDP 408
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
PS+ FNY +D + I +I+ + ++ D +S
Sbjct: 409 FAHPSILFNYMSTEQDWREFRDAIRITREIMHQPALDPYRGDEISP-------------- 454
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
KH T L+ F R+ T +H C++G+ VVD +V G++ LRVVD S
Sbjct: 455 -GKHLQTDAELDDFVRNHAETAYHPSCSCKMGEDEMAVVDGQGRVHGMNGLRVVDASIMP 513
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + +I
Sbjct: 514 LIITGNLNATTIMIAEKIADQI 535
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 143/560 (25%), Positives = 229/560 (40%), Gaps = 100/560 (17%)
Query: 42 AKPVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERG-DSPYGNPNITNSGSFSAELA 98
++P YD+IVIGGG+AG +A+ LS+ VLL+E G D P G + +F
Sbjct: 59 SEPDYEYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDI 118
Query: 99 DLSPTSPSQRFIS----EDGVVSTRARVLGGGTCINAGFYTRA--EPY--YAREA--GWD 148
D + +R E R +VLGG + +N Y R E Y +A + GW
Sbjct: 119 DYRYNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWS 178
Query: 149 GRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN--------------GFTYD 194
+ V ++ E + + + + GL+ VG PYN GF+
Sbjct: 179 YQDVLPFFKKSEDNLELDAVGTEYHA--KGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQ 236
Query: 195 HLYGTKIGGTIIDQNSQRH-----TAADLLEYAN-PSGLTVLLHASVHKILFRNKGKARP 248
L G G +I Q + R+ +A L A + L +LL+ +V K+L P
Sbjct: 237 DLNGQNSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIH------P 290
Query: 249 VAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL 308
VV + +D + + + K E+IVS GA+ SPQ+L+LSGVGP + L+ N+ V
Sbjct: 291 GTKNVVGVEVSD-QFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVH 349
Query: 309 DQPLVGQGMSDN---------------PMNAIFVPSPVPVEVSLIQVVGITQ-------- 345
P VG+ + ++ P+N + L+ GI+
Sbjct: 350 HLPGVGKNLHNHVAYFTNFFIDDADTAPLNWATAMEYLLFRDGLMSGTGISDVTAKMATR 409
Query: 346 -------------FGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRN 392
FG Y+ + G S R IF ++ P S G++ LR+ +
Sbjct: 410 WADRPNLPDLQLYFGGYLASCARTGQVGELLSNNS-RAIQIFPAVLNPKSRGYITLRSAD 468
Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF--KYDNMSVETLLNMTASMP 450
P D P + NY + D++ V+GI ++ ++ ++ + D V+
Sbjct: 469 PLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQYGMRLDKTVVKG--------- 519
Query: 451 LNLLPKHSNTSTS-LEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVV 503
H+ S + E R H G C++G VV+H+ +V GV LRV+
Sbjct: 520 ---CESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVHGVRGLRVM 576
Query: 504 DGSTFYYSPGTNPQATVMML 523
D S N A +M+
Sbjct: 577 DTSIMPKVTAGNTHAPAVMI 596
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 143/563 (25%), Positives = 223/563 (39%), Gaps = 113/563 (20%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----DLSP 102
DYI+IG G+AG LA LS+++ SV++LE G + G P I + + ++ +
Sbjct: 4 DYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIG-PFIQMPAALAWPMSMNRYNWGY 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
S + ++ + + R +V+GG + IN Y R PY+
Sbjct: 63 LSEPEPHLNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAYADVLPYF 122
Query: 142 AR-------EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYD 194
R E GW G + V++ V P L VE G T D
Sbjct: 123 KRMEHSHGGEDGWRG---TDGPLHVQRGPVKNP--------LFHAFVEAGKQAGFEMTDD 171
Query: 195 HLYGTKIGGTIIDQNSQR----HTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
+ + G +++Q + R A+ L+ A L+ KI+ N G+A
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLKPALKRPNVQLIRCFARKIVIEN-GRAT--- 227
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV E + R E+IVSA + SP+LLMLSG+GPA HLK I V +D+
Sbjct: 228 -GVEIERGGRIEVVKANR-----EVIVSASSFNSPKLLMLSGIGPAAHLKDLGIDVKVDR 281
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEV-----SLIQVVGITQF---------GSYIEGASGV 356
P VGQ + D+ S PV + Q V Q+ + E + +
Sbjct: 282 PGVGQNLQDHMEFYFQQISTKPVSLYSWLPWFWQGVAGAQWLFFKSGLGISNQFEACAFL 341
Query: 357 NFAGGSPSPR----------PYRGGFI-----FEKIIG---PVSTGHLELRTRNPNDTPS 398
A G P Y G F+ +G S G + LR +P P
Sbjct: 342 RSAPGVKQPDIQYHFLPVAIRYDGKAAANTHGFQVHVGYNLSKSRGSVTLRASDPKADPV 401
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY PED ++ + +I K+F +++ + +
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEIQPGERV--------------- 446
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSP 512
T ++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F +
Sbjct: 447 QTDEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIFPHVT 506
Query: 513 GTNPQATVMMLGRYMGVRILSER 535
N A +M G IL ++
Sbjct: 507 YGNLNAPSIMTGEKAADHILGKQ 529
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 112 bits (281), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 222/554 (40%), Gaps = 101/554 (18%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS++ SV+++E G P P I + S E D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
+S + I +V+ R +VLGG + IN Y R PY+
Sbjct: 63 SSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYF 122
Query: 142 AR----EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
R + G +G +V++ P + A EV YNG +
Sbjct: 123 KRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEV-ADDYNGEKQEGF- 180
Query: 198 GTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256
+ TI N +R +AA+ L+ A L+ KI+ K A GV
Sbjct: 181 -GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGK-----RAVGVEIE 232
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
I R E+I++A ++ SP+LLMLSG+GPA HLK H I +V D+P VGQ
Sbjct: 233 AGRTFSTIRARR-----EVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQN 287
Query: 317 MSDN-----------PMNA-----IFVPSPVPVEVSLIQV-VGIT---QFGSYIEGASGV 356
+ D+ P+ +F + + VE L + G T + +++ +GV
Sbjct: 288 LQDHLEVYIQQECTQPITLYSELNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGV 347
Query: 357 NFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSVTFNYF 404
+ P Y G F+ +GP+ S G + LR+ NP + P + FNY
Sbjct: 348 EYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYM 407
Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
+D + +I +F ++ + H T +
Sbjct: 408 SHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGA---------------HVQTDDEI 452
Query: 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
+ F R+ V + +H G C++G VVD + +V+GV+ LRV D S F N
Sbjct: 453 DNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNG 512
Query: 519 TVMMLGRYMGVRIL 532
+M+G IL
Sbjct: 513 PSIMVGEKASDHIL 526
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 222/554 (40%), Gaps = 101/554 (18%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS++ SV+++E G P P I + S E D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
+S + I +V+ R +VLGG + IN Y R PY+
Sbjct: 63 SSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYF 122
Query: 142 AR----EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
R + G +G +V++ P + A EV YNG +
Sbjct: 123 KRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEV-TDDYNGEKQEGF- 180
Query: 198 GTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256
+ TI N +R +AA+ L+ A L+ KI+ K A GV
Sbjct: 181 -GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGK-----RAVGVEIE 232
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
I R E+I++A ++ SP+LLMLSG+GPA HLK H I +V D+P VGQ
Sbjct: 233 AGRTFSTIRARR-----EVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQN 287
Query: 317 MSDN-----------PMNA-----IFVPSPVPVEVSLIQV-VGIT---QFGSYIEGASGV 356
+ D+ P+ +F + + VE L + G T + +++ +GV
Sbjct: 288 LQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGV 347
Query: 357 NFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSVTFNYF 404
+ P Y G F+ +GP+ S G + LR+ NP + P + FNY
Sbjct: 348 EYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYM 407
Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
+D + +I +F ++ + H T +
Sbjct: 408 SHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGA---------------HVQTDDEI 452
Query: 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
+ F R+ V + +H G C++G VVD + +V+GV+ LRV D S F N
Sbjct: 453 DNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNG 512
Query: 519 TVMMLGRYMGVRIL 532
+M+G IL
Sbjct: 513 PSIMVGEKASDHIL 526
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 222/554 (40%), Gaps = 101/554 (18%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS++ SV+++E G P P I + S E D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
+S + I +V+ R +VLGG + IN Y R PY+
Sbjct: 63 SSEPEPHIGGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYF 122
Query: 142 AR----EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
R + G +G +V++ P + A EV YNG +
Sbjct: 123 KRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEV-TDDYNGEKQEGF- 180
Query: 198 GTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256
+ TI N +R +AA+ L+ A L+ KI+ K A GV
Sbjct: 181 -GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGK-----RAVGVEIE 232
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
I R E+I++A ++ SP+LLMLSG+GPA HLK H I +V D+P VGQ
Sbjct: 233 AGRTFSTIRARR-----EVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQN 287
Query: 317 MSDN-----------PMNA-----IFVPSPVPVEVSLIQV-VGIT---QFGSYIEGASGV 356
+ D+ P+ +F + + VE L + G T + +++ +GV
Sbjct: 288 LQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGV 347
Query: 357 NFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSVTFNYF 404
+ P Y G F+ +GP+ S G + LR+ NP + P + FNY
Sbjct: 348 EYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYM 407
Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
+D + +I +F ++ + H T +
Sbjct: 408 SHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGA---------------HVQTDDEI 452
Query: 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
+ F R+ V + +H G C++G VVD + +V+GV+ LRV D S F N
Sbjct: 453 DNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNG 512
Query: 519 TVMMLGRYMGVRIL 532
+M+G IL
Sbjct: 513 PSIMVGEKASDHIL 526
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 222/554 (40%), Gaps = 101/554 (18%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFS----AELADLSP 102
D+++IG G+AG +A LS++ SV+++E G P P I + S E D
Sbjct: 4 DFVIIGSGSAGSAMAYRLSEDGRYSVIVIEYG-VPDVGPLIQMPAALSFPMNMETYDWGF 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
+S + I +V+ R +VLGG + IN Y R PY+
Sbjct: 63 SSEPEPHIRGRSLVTPRGKVLGGSSSINGMVYVRGHACDFDHWSQSGARGWAYADVLPYF 122
Query: 142 AR----EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
R + G +G +V++ P + A EV YNG +
Sbjct: 123 KRMENSQGGQEGWRGTNGPLYVQRGKRDNPLFHAFVEAGHQAGFEV-TDDYNGEKQEGF- 180
Query: 198 GTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256
+ TI N +R +AA+ L+ A L+ KI+ K A GV
Sbjct: 181 -GPMEQTI--HNGRRWSAANAYLKPALKRPNVKLVKGFARKIVLEGK-----RAVGVEIE 232
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
I R E+I++A ++ SP+LLMLSG+GPA HLK H I +V D+P VGQ
Sbjct: 233 AGRTFSTIRARR-----EVIIAASSINSPKLLMLSGIGPAAHLKEHGIDLVADRPGVGQN 287
Query: 317 MSDN-----------PMNA-----IFVPSPVPVEVSLIQV-VGIT---QFGSYIEGASGV 356
+ D+ P+ +F + + VE L + G T + +++ +GV
Sbjct: 288 LQDHLEVYIQQECTQPITLYSKLNLFSKARIGVEWLLFKTGDGATNHFESAAFVRSKAGV 347
Query: 357 NFAGGS----PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSVTFNYF 404
+ P Y G F+ +GP+ S G + LR+ NP + P + FNY
Sbjct: 348 EYPDIQYHFLPVAIRYDGKAAAQSHGFQAHVGPMRSKSRGSVTLRSANPREKPVIKFNYM 407
Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
+D + +I +F ++ + H T +
Sbjct: 408 SHEDDWADFRHCVRLTREIFGQAAFDPYRGAEIQPGA---------------HVQTDDEI 452
Query: 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
+ F R+ V + +H G C++G VVD + +V+GV+ LRV D S F N
Sbjct: 453 DNFIREHVESAFHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRITNGNLNG 512
Query: 519 TVMMLGRYMGVRIL 532
+M+G IL
Sbjct: 513 PSIMVGEKASGHIL 526
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 147/564 (26%), Positives = 223/564 (39%), Gaps = 115/564 (20%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+IG G+AG LA L+++A SVLLLE G Y + A LA
Sbjct: 5 FDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE------------------- 138
+ + + + ++ + R + LGG + IN Y R
Sbjct: 62 YNWAYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNALDFDNWAKAKGLEDWTYH 121
Query: 139 ---PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDH 195
PY+ + D + Y + V P + + L +VE GV T D
Sbjct: 122 DCLPYFRKAESRD--IGPNDYHGGDGPVSVTTP-KAGNNPLFHAMVEAGVQAGYPRT-DD 177
Query: 196 LYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARP 248
L G + G T+ Q + TA L+ A LT++ HA+ +ILF K
Sbjct: 178 LNGYQQEGFGPMDRTVTPQGRRASTARGYLDQARERPNLTIVTHATTDRILFDGK----- 232
Query: 249 VAHGVVF-----RDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHN 303
A GV + DAT+A + E+++ AGA+ SPQ+L SGVGPA L+ +
Sbjct: 233 RASGVSYLIGNANDATEAR--------ARREVLLCAGAIASPQILQRSGVGPAALLRELD 284
Query: 304 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVE----VSLIQVVGITQ---FGSYIEGASGV 356
I +V + P VGQ + D+ + PV + L+ GI F GAS
Sbjct: 285 IALVHELPGVGQNLQDHLEMYLQYACTQPVSLYPALKLLNQPGIGAQWLFTGNGIGASNQ 344
Query: 357 NFAGGSPSPRP-----------------YRGGFI-----FEKIIGPV---STGHLELRTR 391
AGG RP Y G F+ +G + S G ++L+++
Sbjct: 345 FEAGGFIRTRPEFAWPNIQFHFLPVAINYNGSNAVNEHGFQAHVGSMRSPSRGRIQLKSK 404
Query: 392 NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPL 451
+P PS+ FNY +D Q I +I+ + ++ +S
Sbjct: 405 DPRQHPSILFNYMSHEQDWQEFRDAIRITREIMAQPALDSYRGREISPGI---------- 454
Query: 452 NLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGST 507
+ L+ F R+ T +H C++G+ VVD +V GV LRVVD S
Sbjct: 455 -----DCQSDAELDAFIREHAETAFHPSCSCKMGEDDMAVVDGQGRVHGVQGLRVVDASI 509
Query: 508 FYYSPGTNPQATVMMLGRYMGVRI 531
N AT +M+ + RI
Sbjct: 510 MPEIITGNLNATTIMMAEKIADRI 533
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 144/563 (25%), Positives = 226/563 (40%), Gaps = 113/563 (20%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----DLSP 102
D+++IG G+AG LA LS++ SV++LE G S G P I + + ++ +
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVG-PFIQMPAALAWPMSMNRYNWGY 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
S + ++ + + R +V+GG + IN Y R PYY
Sbjct: 63 LSEPEPNLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAYADVLPYY 122
Query: 142 AR-------EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYD 194
R E GW G + V++ V P + A ++ EV T D
Sbjct: 123 KRMEHSHGGEEGWRG---TDGPLHVQRGPVKNPLFHAFIEAGKEAGFEV--------TED 171
Query: 195 HLYGTKIGGTIIDQNSQR----HTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
+ + G +++Q + R A+ L A L+ KI+ N G+A
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVELIRCFARKIVIEN-GRAT--- 227
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV E + R E+IVSA + SP+LLMLSG+GPA HLK I V +D+
Sbjct: 228 -GVEIERGGRIEVVKANR-----EVIVSASSFNSPKLLMLSGIGPAAHLKEMGIDVKVDR 281
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEVS-----------------LIQVVGIT-QFGS--YI 350
P VGQ + D+ S PV + + +GI+ QF S ++
Sbjct: 282 PGVGQNLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFL 341
Query: 351 EGASGVNFAGGS----PSPRPYRGGFI-----FEKIIG---PVSTGHLELRTRNPNDTPS 398
A GV P Y G F+ +G S G++ LR+ +P P
Sbjct: 342 RSAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGNVSLRSSDPKADPV 401
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY PED ++ + +I K+F ++ + +
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEIQPGEKV--------------- 446
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSP 512
T ++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F +
Sbjct: 447 QTDEEIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHIT 506
Query: 513 GTNPQATVMMLGRYMGVRILSER 535
N A +M G IL +
Sbjct: 507 YGNLNAPSIMTGEKSADHILGRQ 529
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 142/557 (25%), Positives = 223/557 (40%), Gaps = 99/557 (17%)
Query: 47 YYDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGS-----FSAELAD 99
++DYI+IG G+AG LA L++++ +VLLLE G Y T + + +
Sbjct: 2 HFDYIIIGAGSAGNVLATRLTEDSDTTVLLLEAGGPDYRADFRTQMPAALAFPLQGKRYN 61
Query: 100 LSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE--------------------- 138
+ + + ++ + R + LGG + IN Y R
Sbjct: 62 WAYETEPEPHMNYRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQEPGLEHWSYLNC 121
Query: 139 -PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
PYY + D + Y + V P + L ++E GV T D L
Sbjct: 122 LPYYRKAETRD--IGPNDYHGGDGPVSVATPKHN-NNPLFHAMIEAGVQAGYPRT-DDLN 177
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ Q + TA L+ A LT++ HA ILF K A
Sbjct: 178 GYQQEGFGPMDRTVTPQGRRASTARGYLDQAKGRPNLTIITHALTDHILFEGK-----KA 232
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV + + + R + E+++ AGA+ SPQ+L SGVG A LKA +I +V
Sbjct: 233 SGVEW---LEGDSTIPTRAMARKEVLLCAGAIASPQILQRSGVGDASLLKAFDIPLVHHL 289
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVGITQFGS-YIEGASGV----NFAGGS-- 362
P VG+ + D+ + PV + +Q + G+ ++ G +GV +F G
Sbjct: 290 PGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFI 349
Query: 363 ----------------PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPS 398
P Y G F+ +G + S GH+ +++R+P + P+
Sbjct: 350 RSSEAFSWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVHIKSRDPREHPA 409
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY +D Q I +II + K++ +S
Sbjct: 410 ILFNYMSTGQDWQEFRDAIRITREIINQPALDKYRGREISPGITC--------------- 454
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGT 514
T L+ F RD T +H G C++G VVD + +V GV+ LRVVD S
Sbjct: 455 QTDEQLDAFVRDHAETAFHPCGTCKMGYDEMAVVDGEGRVHGVENLRVVDASIMPQIITG 514
Query: 515 NPQATVMMLGRYMGVRI 531
N AT +M+G M I
Sbjct: 515 NLNATTIMIGEKMADAI 531
>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain
306) GN=betA PE=3 SV=1
Length = 556
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 149/558 (26%), Positives = 222/558 (39%), Gaps = 103/558 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 5 YDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDY---RVDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAG---WDGR 150
+ + + + ++ + R + LGG + IN Y R ++A+ G W R
Sbjct: 62 YNWAYETEPEPYMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYR 121
Query: 151 LVNESYQWVEKK-------------VVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
V ++ E + V P + L +VE GV T D L
Sbjct: 122 DVLPYFRKAETRDIGANDYHGGDGPVSVATPKND-NNVLFHAMVEAGVQAGYPRTGD-LN 179
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ + + TA L+ A P GL ++ HA+ +ILF K A
Sbjct: 180 GYQQEGFGPMDRTVTPRGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK-----RA 234
Query: 251 HGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV + +E I A+ R E++V AGA+ SPQLL SGVG D L+A ++ +V D
Sbjct: 235 IGVHYLVGNSSEGIDAHARR----EVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHD 290
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQ-----VVGITQ-FGSYIEGASGVNFAGGS 362
P VGQ + D+ I PV + +Q +G F GAS AGG
Sbjct: 291 LPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQPAIGAQWLFAGTGTGASNQFEAGGF 350
Query: 363 PSPRP-----------------YRGGFI-----FEKIIGPVST---GHLELRTRNPNDTP 397
R Y G F+ +G + T G + ++R+P P
Sbjct: 351 IRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHAKSRDPRQHP 410
Query: 398 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKH 457
S+ FNY +D Q I +II + ++ +S
Sbjct: 411 SILFNYQSTDQDWQEFRDAIRITREIIAQPALDAYRGREISPSA---------------D 455
Query: 458 SNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPG 513
T L+ F R T +H C +G VVD +V G++ LRV+D S
Sbjct: 456 CKTDAELDAFVRSRAETAYHPSCSCAMGTDAMAVVDGQGRVHGMEGLRVIDASIMPRIIT 515
Query: 514 TNPQATVMMLGRYMGVRI 531
N AT +M+ + R+
Sbjct: 516 GNLNATTIMIAEKIADRV 533
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 144/556 (25%), Positives = 226/556 (40%), Gaps = 99/556 (17%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+IG G+AG LA L++ N SVLLLE G Y A LA
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDY---RFDFRTQMPAALAFPLQGKR 59
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPY----YAREAG---WDGR 150
+ + + + F++ + R + LGG + IN Y R +A+E G W
Sbjct: 60 YNWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYL 119
Query: 151 LVNESYQWVEKKVVFRP-------PMQRWQSA-----LRDGLVEVGVLPYNGFTYDHLYG 198
Y+ E + V P+ S L + ++E GV T D L G
Sbjct: 120 DCLPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRT-DDLNG 178
Query: 199 TKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPVAH 251
+ G T+ Q + TA L+ A LT+ HA I+F K A
Sbjct: 179 YQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK-----RAV 233
Query: 252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP 311
GV + + + R E+++ AGA+ SPQ+L SGVG A+ L +I +V D P
Sbjct: 234 GVEW---LEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLP 290
Query: 312 LVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVGITQFGS-YIEGASGV----NFAGGS--- 362
VG+ + D+ + PV + +Q + G+ ++ G +GV +F G
Sbjct: 291 GVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIR 350
Query: 363 ---------------PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSV 399
P Y G F+ +G + S GH+ +++R+P+ P++
Sbjct: 351 SREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAI 410
Query: 400 TFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSN 459
FNY +D Q I +I+ + +++ +S T
Sbjct: 411 LFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------ECQ 455
Query: 460 TSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTN 515
T L++F R+ T +H G C++G VVD + +V G++ LRVVD S N
Sbjct: 456 TDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
Query: 516 PQATVMMLGRYMGVRI 531
AT +M+G M I
Sbjct: 516 LNATTIMIGEKMADMI 531
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 144/556 (25%), Positives = 226/556 (40%), Gaps = 99/556 (17%)
Query: 48 YDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+IG G+AG LA L++ N SVLLLE G Y A LA
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDY---RFDFRTQMPAALAFPLQGKR 59
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPY----YAREAG---WDGR 150
+ + + + F++ + R + LGG + IN Y R +A+E G W
Sbjct: 60 YNWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAKEPGLENWSYL 119
Query: 151 LVNESYQWVEKKVVFRP-------PMQRWQSA-----LRDGLVEVGVLPYNGFTYDHLYG 198
Y+ E + V P+ S L + ++E GV T D L G
Sbjct: 120 DCLPYYRKAETRDVGENDYHGGDGPVSVTTSKPGVNPLFEAMIEAGVQAGYPRT-DDLNG 178
Query: 199 TKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPVAH 251
+ G T+ Q + TA L+ A LT+ HA I+F K A
Sbjct: 179 YQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRTHAMTDHIIFDCK-----RAV 233
Query: 252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP 311
GV + + + R E+++ AGA+ SPQ+L SGVG A+ L +I +V D P
Sbjct: 234 GVEW---LEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAELLAEFDIPLVHDLP 290
Query: 312 LVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVGITQFGS-YIEGASGV----NFAGGS--- 362
VG+ + D+ + PV + +Q + G+ ++ G +GV +F G
Sbjct: 291 GVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGGTGVGASNHFEAGGFIR 350
Query: 363 ---------------PSPRPYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTPSV 399
P Y G F+ +G + S GH+ +++R+P+ P++
Sbjct: 351 SREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSPSRGHVRIKSRDPHQHPAI 410
Query: 400 TFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSN 459
FNY +D Q I +I+ + +++ +S T
Sbjct: 411 LFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISPGT---------------ECQ 455
Query: 460 TSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTN 515
T L++F R+ T +H G C++G VVD + +V G++ LRVVD S N
Sbjct: 456 TDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIMPQIITGN 515
Query: 516 PQATVMMLGRYMGVRI 531
AT +M+G M I
Sbjct: 516 LNATTIMIGEKMADMI 531
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 143/558 (25%), Positives = 219/558 (39%), Gaps = 105/558 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+ G G+AG LA L+++ +VLLLE G Y A LA
Sbjct: 6 YDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGGPDY---RFDFRTQMPAALAYPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ 157
+ + + + + + R + LGG + IN Y R W E++
Sbjct: 63 YNWAYETDPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNAL--DYDNWSTHKGLENWT 120
Query: 158 WVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGFTYDHL 196
+++ F+ R + L + +V+ GV T D L
Sbjct: 121 YLDCLPYFKKAETRDVGPNDYHGGSGPVSVTTSKPGVNPLFEAMVDAGVQAGYPRT-DDL 179
Query: 197 YGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPV 249
G + G T+ + + TA L+ A L ++ HA +ILF K
Sbjct: 180 NGYQQEGFGPMDRTVTPKGRRASTARGYLDQAKARPNLEIVTHALADRILFDGK-----R 234
Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
A GV + ++ A+ R E++V +GA+ SPQLL SGVGP LKA +I VVLD
Sbjct: 235 ASGVTYLRGSE-RATAHARR----EVLVCSGAIASPQLLQRSGVGPGAWLKALDIPVVLD 289
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPV------------EVSLIQVVGITQFGS--YIEGASG 355
P VGQ + D+ I PV ++ L ++ T G+ + E
Sbjct: 290 LPGVGQNLQDHLEMYIQYECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGF 349
Query: 356 VNFAGGSPSPR----------PYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTP 397
+ P P Y G F+ +G + S G ++LR+R+PND P
Sbjct: 350 IRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLRSRDPNDHP 409
Query: 398 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKH 457
S+ FNY E D + I +I+ + +++ LN A
Sbjct: 410 SILFNYMAEALDWREFRDAIRATREIMRQPALDRYRGRE------LNPGAD--------- 454
Query: 458 SNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPG 513
T L+ F R T +H C++G VVD + +V G+D LRVVD S
Sbjct: 455 CKTDKELDAFVRARAETAFHPSCSCKMGYDDMAVVDEEGRVHGLDGLRVVDASIMPIITT 514
Query: 514 TNPQATVMMLGRYMGVRI 531
N A +M+ + +I
Sbjct: 515 GNLNAPTIMIAEKIADKI 532
>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria
(strain 85-10) GN=betA PE=3 SV=1
Length = 556
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 149/558 (26%), Positives = 222/558 (39%), Gaps = 103/558 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LAA L+++ +VLLLE G Y + A LA
Sbjct: 5 YDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAG---WDGR 150
+ + + + ++ + R + LGG + IN Y R ++A+ G W R
Sbjct: 62 YNWAYETEPEPYMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWSYR 121
Query: 151 LVNESYQWVEKK-------------VVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
V ++ E + V P + L +VE GV T D L
Sbjct: 122 DVLPYFRKAETRDIGANDYHGGDGPVSVATPKND-NNVLFHAMVEAGVQAGYPRT-DDLN 179
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ + + TA L+ A P GL ++ HA+ +ILF K A
Sbjct: 180 GYQQEGFGPMDRTVTPRGRRASTARGYLDMAKPRDGLHIVTHATTDRILFAGK-----RA 234
Query: 251 HGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV + +E I A+ R E++V AGA+ SPQLL SGVG D L+A ++ +V D
Sbjct: 235 IGVHYLVGNSSEGIDAHARR----EVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHD 290
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQ-----VVGITQ-FGSYIEGASGVNFAGGS 362
P VGQ + D+ I PV + +Q +G F GAS AGG
Sbjct: 291 LPGVGQNLQDHLEVYIQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAGGF 350
Query: 363 PSPRP-----------------YRGGFI-----FEKIIGPVST---GHLELRTRNPNDTP 397
R Y G F+ +G + T G + ++R+P P
Sbjct: 351 IRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHAKSRDPRQHP 410
Query: 398 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKH 457
S+ FNY +D Q I +II + ++ +S
Sbjct: 411 SILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSA---------------D 455
Query: 458 SNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPG 513
T L+ F R T +H C +G VVD +V G++ LRV+D S
Sbjct: 456 CKTDAELDAFVRSRAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRIIT 515
Query: 514 TNPQATVMMLGRYMGVRI 531
N AT +M+ + R+
Sbjct: 516 GNLNATTIMIAEKIADRM 533
>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25)
GN=betA PE=3 SV=1
Length = 567
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 146/559 (26%), Positives = 223/559 (39%), Gaps = 105/559 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI++G G+AG LA L+++ +VLLLE G Y + A LA
Sbjct: 5 YDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE------------------- 138
+ + + + + + R + LGG + IN Y R
Sbjct: 62 YNWAYETDPEPHMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLENWTYL 121
Query: 139 ---PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDH 195
PY+ + D + Y E V P + + L +VE GV T D
Sbjct: 122 DCLPYFRKAETRD--IGPNDYHGGEGPVSVTTP-KAGNNPLFHAMVEAGVQAGYPRT-DD 177
Query: 196 LYGTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARP 248
L G + G T+ + TA L+ A S LT++ HA K+LF K
Sbjct: 178 LNGYQQEGFGPMDRTVTKNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFEGK----- 232
Query: 249 VAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL 308
A GV + E + + E++V +GA+ SPQLL SGVGPA L++ +I VV
Sbjct: 233 RAVGVRYLIGAAEERVEAR---ARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVH 289
Query: 309 DQPLVGQGMSDNPMNAIFVPSPVPVEV--SLIQ----VVGITQ-FGSYIEGASGVNFAGG 361
D P VG+ + D+ + PV + SL+ +G F GAS AGG
Sbjct: 290 DLPGVGENLQDHLELYLQYACTQPVSLYPSLLWYNQPAIGAEWLFNGTGIGASNQFEAGG 349
Query: 362 SPSPRP-----------------YRGG-----FIFEKIIGPV---STGHLELRTRNPNDT 396
RP Y G F+ +G + S G ++L+++NP D
Sbjct: 350 FIRSRPEFDWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPSRGRVQLKSKNPRDY 409
Query: 397 PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPK 456
PS+ FNY +D Q GI +I++ + ++ +S +
Sbjct: 410 PSILFNYMATEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV------------- 456
Query: 457 HSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSP 512
T L++F R+ T +H C++G VVD + +V G+ LRVVD S
Sbjct: 457 --QTDEQLDKFIREHAETAFHPSCSCKMGTDEMAVVDGEGRVHGMQGLRVVDASIMPIIT 514
Query: 513 GTNPQATVMMLGRYMGVRI 531
N A +M+ + +I
Sbjct: 515 TGNLNAPTIMIAEKIADKI 533
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 142/569 (24%), Positives = 228/569 (40%), Gaps = 116/569 (20%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDS--------PYGNPNITNSGSFSA 95
+YDYI++G G+AGC LA LS++ SVLLLE G S P NS ++
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAW 62
Query: 96 ELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE------AGWDG 149
+ + R + R +VLGG + IN Y R E GW+
Sbjct: 63 QFETDAEADLDGRRLH-----CPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNY 117
Query: 150 RLV----NESYQWVEKKVVFR----------------PPMQRWQSALRDGLVEVG---VL 186
+ + W++ + +R P+ R A D E G
Sbjct: 118 QACLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYR---AFIDAGKEAGYPETS 174
Query: 187 PYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKA 246
YNG+ + + T+ + + A L S ++ V +IL K
Sbjct: 175 DYNGYQQEGFGPMHM--TVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK--- 229
Query: 247 RPVAHGVVFRDATDAEHIAYLRNG-PKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV F A + LR KNE+I SAG++GS QLL LSG+GP L+ +T
Sbjct: 230 --RAVGVEFELAGE------LRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVT 281
Query: 306 VVLDQPLVGQGMSDNPMNAIF---VPSPVPVEVSLIQ----VVG----ITQFG------- 347
V P VGQ + D+ + F P+ + L ++G +T+ G
Sbjct: 282 PVHHLPGVGQNLQDH-LEVYFQYHCQKPITLNGKLDWFSKGLIGAEWILTRKGLGATNHF 340
Query: 348 ---SYIEGASGVNFAGGS----PSPRPYRG-----GFIFEKIIGP---VSTGHLELRTRN 392
++I +G+ + P+ Y G G F+ +GP S G +E+ + N
Sbjct: 341 ESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSAN 400
Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN 452
P+D P + FNY D Q I +I+ + +F+ + ++ +N+
Sbjct: 401 PSDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGE--EIQPGINVA------ 452
Query: 453 LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGS 506
T ++Q+ ++ V + +H C++G V+D + +V G+ LRVVD S
Sbjct: 453 -------TDAEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSS 505
Query: 507 TFYYSPGTNPQATVMMLGRYMGVRILSER 535
F P N A +M+ IL ++
Sbjct: 506 VFPTIPNGNLNAPTIMVAERAADLILHKQ 534
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 138/562 (24%), Positives = 231/562 (41%), Gaps = 111/562 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+IG G+AG LA L++++ +VLLLE G Y A LA
Sbjct: 3 FDYIIIGAGSAGNVLATRLTEDSDVTVLLLEAGGPDY---RFDFRTQMPAALAYPLQGKR 59
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPY----YAREAGWDGRLVN 153
+ + + + +++ + R + LGG + IN Y R +A++ G
Sbjct: 60 YNWAYETEPEPYMNNRRMECGRGKGLGGSSLINGMCYIRGNAMDLDNWAQQPGL------ 113
Query: 154 ESYQWVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGFT 192
E + +++ +R R + L ++E GV T
Sbjct: 114 ERWTYLDCLPYYRKSETRDIGANDYHGGDGPVSITTCKPGNNPLFAAMIEAGVQAGYPRT 173
Query: 193 YDHLYGTKIGGT------IIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGK 245
D L G + G + + + TA L+ A L ++ HA+ +ILF NK +
Sbjct: 174 -DDLNGYQQEGFGPMDRFVTPKGRRSSTARGYLDTAKQRPNLKIITHATTDRILFENK-R 231
Query: 246 ARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A VA+ A++ + R E+++ AGA+ SPQ+L SGVG A+ LK +I
Sbjct: 232 AVGVAY---LHGASNTPQEVHARR----EVLLCAGAIASPQILQRSGVGNAELLKQFDIP 284
Query: 306 VVLDQPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQVVGITQFGS-YIEGASGV----NFA 359
VV D P VG+ + D+ + PV + ++ + G+ ++ +G+ +F
Sbjct: 285 VVHDLPGVGENLQDHLEMYLQYECKEPVSLYPALKWWNQPKIGAEWLFNGTGIGASNHFE 344
Query: 360 GGS------------------PSPRPYRG-----GFIFEKIIGPV---STGHLELRTRNP 393
GG P Y G F+ +G + S GH+ +++R+P
Sbjct: 345 GGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVEAHGFQCHVGSMRSPSRGHVRIKSRDP 404
Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
+ P++ FNY +D Q I +II + KF+ +S
Sbjct: 405 HQHPAILFNYMSHEQDWQEFRDAIRITRQIINQPALDKFRGREISPGI------------ 452
Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFY 509
T L++F R+ T +H G C++G VVD + +V G++ LRVVD S
Sbjct: 453 ---DCQTDEQLDEFVRNHAETAYHPCGTCKMGSDEMAVVDDEGRVHGLEGLRVVDASIMP 509
Query: 510 YSPGTNPQATVMMLGRYMGVRI 531
N AT +M+G + I
Sbjct: 510 LIITGNLNATTIMIGEKIADNI 531
>sp|Q48CM7|BETA_PSE14 Choline dehydrogenase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=betA PE=3 SV=1
Length = 568
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 140/565 (24%), Positives = 225/565 (39%), Gaps = 113/565 (20%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----- 98
S YDYI+IG G+AG LAA L+++A +VLLLE G Y + A LA
Sbjct: 5 SEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDY---RLDFRTQMPAALAFPLQG 61
Query: 99 ---DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNES 155
+ + + + ++ + R + LGG + IN Y R GW E
Sbjct: 62 RRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAM--DYDGWAKEPGLED 119
Query: 156 YQWVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGF-TY 193
+ +++ FR R + L +VE GV GF
Sbjct: 120 WSYLDCLPYFRKAETRDIGPNDYHGGEGPVSVTKPKAGNNPLFHAMVEAGV--QAGFPRT 177
Query: 194 DHLYGTKIGG-----TIIDQNSQRHTAAD--LLEYANPSGLTVLLHASVHKILFRNKGKA 246
D L G + G + N +R + A L E S LT++ HA +ILF K +A
Sbjct: 178 DDLNGYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RA 236
Query: 247 RPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITV 306
VA+ V D ++ + E+++ GA+ SPQ+L SGVGPA+ L +I V
Sbjct: 237 VGVAYLVGDSDTR-------IQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPV 289
Query: 307 VLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPR 366
V D P VGQ + D+ + PV + + + GA + G +
Sbjct: 290 VHDLPGVGQNLQDHLEMYLQYACTQPVSL----YPSLKWWNQPAIGAKWMFLGTGIGASN 345
Query: 367 PYR-GGFI--------------------------------FEKIIGPV---STGHLELRT 390
+ GGFI F+ +G + S G +++++
Sbjct: 346 QFEAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGRVQVKS 405
Query: 391 RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMP 450
++P + PS+ FNY +D Q GI +I++ + ++ +S +
Sbjct: 406 KDPREYPSILFNYMSSEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV------- 458
Query: 451 LNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGS 506
+ +L+QF R+ T +H C++G VVD +V G+ +LRVVD S
Sbjct: 459 --------QSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDAS 510
Query: 507 TFYYSPGTNPQATVMMLGRYMGVRI 531
N A +M+ + +I
Sbjct: 511 IMPIITTGNLNAPTIMIAEKIADKI 535
>sp|Q4ZM63|BETA_PSEU2 Choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain
B728a) GN=betA PE=3 SV=1
Length = 568
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 140/565 (24%), Positives = 225/565 (39%), Gaps = 113/565 (20%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----- 98
S YDYI+IG G+AG LAA L+++A +VLLLE G Y + A LA
Sbjct: 5 SEYDYIIIGAGSAGNTLAARLTEDAGVTVLLLEAGGPDY---RLDFRTQMPAALAFPLQG 61
Query: 99 ---DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNES 155
+ + + + ++ + R + LGG + IN Y R GW E
Sbjct: 62 RRYNWAYETEPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAM--DYDGWAKEPGLED 119
Query: 156 YQWVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGF-TY 193
+ +++ FR R + L +VE GV GF
Sbjct: 120 WSYLDCLPYFRKAETRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGV--QAGFPRT 177
Query: 194 DHLYGTKIGG-----TIIDQNSQRHTAAD--LLEYANPSGLTVLLHASVHKILFRNKGKA 246
D L G + G + N +R + A L E S LT++ HA +ILF K +A
Sbjct: 178 DDLNGYQQEGFGPMDRTVTPNGRRASTARGYLDEAKKRSTLTIVTHALTDRILFEGK-RA 236
Query: 247 RPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITV 306
VA+ V D ++ + E+++ GA+ SPQ+L SGVGPA+ L +I V
Sbjct: 237 VGVAYLVGDSDTR-------IQARARKEVLLCGGAIASPQILQRSGVGPAEVLNKLDIPV 289
Query: 307 VLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPR 366
V D P VGQ + D+ + PV + + + GA + G +
Sbjct: 290 VHDLPGVGQNLQDHLEMYLQYACTQPVSL----YPSLKWWNQPAIGAEWMFLGTGIGASN 345
Query: 367 PYR-GGFI--------------------------------FEKIIGPV---STGHLELRT 390
+ GGFI F+ +G + S G +++++
Sbjct: 346 QFEAGGFIRSSEAFEWPNIQYHFLPVAINYNGTKGVQEHGFQAHVGSMRSPSRGRVQVKS 405
Query: 391 RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMP 450
++P + PS+ FNY +D Q GI +I++ + ++ +S +
Sbjct: 406 KDPREYPSILFNYMASEQDWQEFRDGIRLTREIMQQPALDPYRGREISPGIDV------- 458
Query: 451 LNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGS 506
+ +L+QF R+ T +H C++G VVD +V G+ +LRVVD S
Sbjct: 459 --------QSDEALDQFVREHAETAYHPSCSCKMGTDEMAVVDGQGRVHGLQSLRVVDAS 510
Query: 507 TFYYSPGTNPQATVMMLGRYMGVRI 531
N A +M+ + +I
Sbjct: 511 IMPIITTGNLNAPTIMIAEKIADKI 535
>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48)
GN=betA PE=3 SV=1
Length = 565
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 147/563 (26%), Positives = 225/563 (39%), Gaps = 105/563 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNASV--LLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI++G G+AG LA L+++ASV LLLE G Y A LA
Sbjct: 5 FDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDY---RFDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE------------------- 138
+ + + + F+ + R + LGG + IN Y R
Sbjct: 62 YNWAYETDPEPFMDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDWTYL 121
Query: 139 ---PYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDH 195
PY+ + D + Y E V P + + L +VE GV T D
Sbjct: 122 DCLPYFRKAETRD--IGPNDYHGGEGPVSVATP-KAGNNPLFHAMVEAGVQAGYPRTED- 177
Query: 196 LYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARP 248
L G + G ++ + + TA L+ A LT++ HA ++LF K
Sbjct: 178 LNGYQQEGFGPMDRSVTKKGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFDGK----- 232
Query: 249 VAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL 308
A GV + D+E R + E+IVS+GA+ SPQLL SGVGP L++ +I VV
Sbjct: 233 RAVGVTYL-VGDSEERVEAR--ARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVH 289
Query: 309 DQPLVGQGMSDNPMNAIFVPSPVPVEV--SLIQ----VVGITQ-FGSYIEGASGVNFAGG 361
D P VG+ + D+ + PV + SL+ +G F GAS AGG
Sbjct: 290 DLPGVGENLQDHLELYLQYACTQPVSLYPSLLWWNQPAIGAEWLFNGTGIGASNQFEAGG 349
Query: 362 SPSPRP-----------------YRGG-----FIFEKIIGPVST---GHLELRTRNPNDT 396
RP Y G F+ +G + + G ++ ++++P
Sbjct: 350 FIRTRPEFKWPNIQYHFLPVAINYNGSNGVKEHGFQAHMGSMRSPARGRIQAKSKDPRQH 409
Query: 397 PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPK 456
PS+ FNY +D Q GI +I+ + F+ +S
Sbjct: 410 PSILFNYMSTEQDWQEFRDGIRLTREIMAQPALDAFRGREISPGA--------------- 454
Query: 457 HSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSP 512
H T L++F R+ T +H C++G VVD + +V G+ LRVVD S
Sbjct: 455 HVQTDEELDKFIREHAETAFHPSCSCKMGTDDMAVVDGEGRVHGMQGLRVVDASIMPLII 514
Query: 513 GTNPQATVMMLGRYMGVRILSER 535
N AT +M+ + +I +
Sbjct: 515 TGNLNATTIMIAEKISDKIRGRK 537
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 108 bits (271), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 143/563 (25%), Positives = 223/563 (39%), Gaps = 113/563 (20%)
Query: 49 DYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA----DLSP 102
D+++IG G+AG LA LS++ SV++LE G S G P I + + ++ +
Sbjct: 4 DFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVG-PFIQMPAALAWPMSMNRYNWGY 62
Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAE---------------------PYY 141
S + ++ + + R +V+GG + IN Y R PYY
Sbjct: 63 LSEPEPNLNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAYADVLPYY 122
Query: 142 AR-------EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYD 194
R E GW G + V++ V P L +E G T D
Sbjct: 123 KRMEHSHGGEEGWRG---TDGPLHVQRGPVKNP--------LFHAFIEAGKQAGFEVTED 171
Query: 195 HLYGTKIGGTIIDQNSQR----HTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
+ + G +++Q + R A+ L A L+ KI+ N G+A
Sbjct: 172 YNGSKQEGFGLMEQTTWRGRRWSAASAYLRPALKRPNVELVRCFARKIVIEN-GRAT--- 227
Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
GV E + R E+IVSA + SP+LLMLSG+GPA HL+ I V D+
Sbjct: 228 -GVEIERGGRTEVVRANR-----EVIVSASSFNSPKLLMLSGIGPAAHLQEMGIDVKADR 281
Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEVS-----------------LIQVVGIT-QFGS--YI 350
P VGQ + D+ S PV + + +GI+ QF S ++
Sbjct: 282 PGVGQNLQDHMEFYFQQVSTKPVSLYSWLPWFWQGVAGAQWLFFKRGLGISNQFESCAFL 341
Query: 351 EGASGVNFAGGS----PSPRPYRGGFI-----FEKIIG---PVSTGHLELRTRNPNDTPS 398
A GV P Y G F+ +G S G + LR+ +P P
Sbjct: 342 RSAPGVKQPDIQYHFLPVAISYDGKAAAKSHGFQVHVGYNLSKSRGDVTLRSSDPKADPV 401
Query: 399 VTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458
+ FNY PED ++ + +I K+F ++ + +
Sbjct: 402 IRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDLYRGPEIQPGEKV--------------- 446
Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSP 512
T ++ F R+ + + +H G C++G VVD + +V+GVD LRV D S F +
Sbjct: 447 RTDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSIFPHIT 506
Query: 513 GTNPQATVMMLGRYMGVRILSER 535
N A +M G IL ++
Sbjct: 507 YGNLNAPSIMTGEKAADHILGKQ 529
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 225/544 (41%), Gaps = 89/544 (16%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNAS--VLLLERG--DSPYGNPNITNSGSFSAEL-ADLSP 102
Y Y+V+G G+AGC LA L+++ + VLLLE G D G+ ++ A L A+L
Sbjct: 41 YSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCD 100
Query: 103 TSPSQRFISE-----DGVV--STRARVLGGGTCINAGFYTR--AEPY--YAREA--GWDG 149
+ + +E DG V R RV GG + +NA Y R AE Y + R+ GWD
Sbjct: 101 DRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWD- 159
Query: 150 RLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNG-FTYDHLYGTKIGGTII-- 206
+ K R++ A DG + V N L T+ G +
Sbjct: 160 --YAHCLPYFRKAQGHELGASRYRGA--DGPLRVSRGKTNHPLHCAFLEATQQAGYPLTE 215
Query: 207 DQNSQRHTAADLLEYANPSGLTV-LLHASVHKILFRN--KGKARPVAHGVVFRDATDAEH 263
D N + ++ G A +H L R K +A + V+F + T A
Sbjct: 216 DMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF-EGTRAVG 274
Query: 264 IAYLRNGPKN------EIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
+ Y++NG + E+I+S GA+ SPQLLMLSG+G AD LK I VV P VGQ +
Sbjct: 275 VEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNL 334
Query: 318 SDNPMNAIFVPSPVPVEVSLIQ------VVGITQFGSYI-EGASGVNFAGGSPSPRP--- 367
D+ I P+ + Q +G+ + EGA+ GG +P
Sbjct: 335 QDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVP 394
Query: 368 ---YRGGFIFEKII----------------GPV---STGHLELRTRNPNDTPSVTFNYFK 405
+ F+ ++I GP+ S G L+LR+ NP D P + NY
Sbjct: 395 HPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLS 454
Query: 406 EPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLE 465
D++ + +I ++ + F+ + + H + ++
Sbjct: 455 TETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGS---------------HIQSDKEID 499
Query: 466 QFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQAT 519
F R + +H C++G+ VVD +VLGV+ LRVVD S N A
Sbjct: 500 AFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAP 559
Query: 520 VMML 523
+M+
Sbjct: 560 TIMI 563
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 228/566 (40%), Gaps = 121/566 (21%)
Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI++G G+AG LA+ L+++A +VLLLE G Y A LA
Sbjct: 6 YDYIIVGAGSAGNVLASRLTEDADVTVLLLEAGGPDY---RFDFRTQMPAALAFPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ 157
+ + + + ++ + R + LGG + IN Y R GW E++
Sbjct: 63 YNWAYETDPEPHMNNRRMECGRGKGLGGSSLINGMCYIRGNAL--DYDGWAAHAGLENWT 120
Query: 158 WVEKKVVFRPPMQRWQSA---------------------LRDGLVEVGVLPYNGF-TYDH 195
+++ FR R A L +VE GV GF D
Sbjct: 121 YLDCLPYFRKAETRDAGANAYHGGDGPVHVTTSKPGNNPLFAAMVEAGVQA--GFPRTDD 178
Query: 196 LYGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARP 248
L G + G T+ + TA L+ A LT++ HA ++LF K R
Sbjct: 179 LNGYQQEGFGPMDRTVTANGRRASTARGYLDRAKTRPNLTIVTHAVTDRVLFSGK---RA 235
Query: 249 VAHGVVFRDATDAEHIAYLRNG------PKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
V +AYL +G + E++V +GA+ SPQLL SGVG + L+
Sbjct: 236 VG-------------VAYLHHGNAVNAQARREVLVCSGAIASPQLLQRSGVGRSTWLREL 282
Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEV-SLIQ-----VVGITQF--GSYIEGAS 354
++ +V D P VG+ + D+ I P+ + +Q +G+ G+ I GAS
Sbjct: 283 DVPLVHDLPGVGENLQDHLEMYIQYECKEPISLYPALQWWNQPAIGLEWMLKGTGI-GAS 341
Query: 355 GVNFAGGSPSPRP-----------------YRGGFI-----FEKIIGPV---STGHLELR 389
AGG R Y G F+ +G + S G ++L
Sbjct: 342 NQFEAGGFIRTRDDDLWPNIQYHFLPVAINYNGSNAIKMHGFQAHVGSMRSPSRGRVKLT 401
Query: 390 TRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASM 449
+R+PN PS+ FNY +P D + GI +I+ + +++ LN A +
Sbjct: 402 SRDPNAHPSILFNYMADPLDWREFRDGIRITREIMRQPALDRYRGRE------LNPGAEL 455
Query: 450 PLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDG 505
T L+ F R T +H C++G VVD++ +V G++ALRVVD
Sbjct: 456 ---------TTDEQLDTFVRMRAETAFHPSCSCKMGYDDMAVVDNEGRVHGMEALRVVDA 506
Query: 506 STFYYSPGTNPQATVMMLGRYMGVRI 531
S N A +ML + RI
Sbjct: 507 SIMPRITTGNLNAPTIMLAEKIADRI 532
>sp|Q63KK7|BETA_BURPS Choline dehydrogenase OS=Burkholderia pseudomallei (strain K96243)
GN=betA PE=3 SV=1
Length = 565
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 141/562 (25%), Positives = 221/562 (39%), Gaps = 105/562 (18%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
+DYI+ G G+AG LA L+++ +VLLLE G Y A LA
Sbjct: 6 FDYIICGAGSAGNVLATRLTEDPGVTVLLLEAGGPDY---RFDFRTQMPAALAYPLQGRR 62
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ 157
+ + + + ++ + R + LGG + IN Y R W E +
Sbjct: 63 YNWAYETDPEPHMNHRRMECGRGKGLGGSSLINGMCYIRGNAL--DYDNWATHKALEDWA 120
Query: 158 WVEKKVVFRPPMQR---------------------WQSALRDGLVEVGVLPYNGFTYDHL 196
+++ FR R + L + +VE GV T D L
Sbjct: 121 YLDCLPYFRKAETRDVGPNDYHGGDGPVSVTTSKPGVNPLFEAMVEAGVQAGYPRT-DDL 179
Query: 197 YGTKIGG------TIIDQNSQRHTAADLLEYANPS-GLTVLLHASVHKILFRNKGKARPV 249
G + G T+ + + TA L+ A L ++ HA +ILF K
Sbjct: 180 NGYQQEGFGPMDRTVTPRGRRASTARGYLDQARARPNLEIVTHALADRILFSGK-----R 234
Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
A GV F + A A+ R E++V +GA+ SPQLL SGVGP + L+ +I VVLD
Sbjct: 235 ATGVTFLHGS-ARVTAHARR----EVLVCSGAIASPQLLQRSGVGPGEWLRELDIPVVLD 289
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPV------------EVSLIQVVGITQFGS--YIEGASG 355
P VG+ + D+ I PV ++ L ++ T G+ + E
Sbjct: 290 LPGVGRNLQDHLEMYIQFECKEPVSLYPALKWWNQPKIGLEWMLNGTGLGASNHFEAGGF 349
Query: 356 VNFAGGSPSPR----------PYRGGFI-----FEKIIGPV---STGHLELRTRNPNDTP 397
+ P P Y G F+ +G + S G ++L++R+P+ P
Sbjct: 350 IRTRDDDPWPNIQYHFLPVAINYNGSNAIEMHGFQAHVGSMRSPSRGRVKLKSRDPHAHP 409
Query: 398 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKH 457
S+ FNY E D + I +I+ + +F+ LN A +
Sbjct: 410 SILFNYMAEALDWREFRDAIRATREIMRQPALDRFRGRE------LNPGADL-------- 455
Query: 458 SNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPG 513
+ L+ F R T +H C++G VVD++ +V G+D LRVVD S
Sbjct: 456 -KSDNELDTFVRARAETAFHPSCSCKMGYDDMAVVDNEGRVHGIDGLRVVDASIMPIITT 514
Query: 514 TNPQATVMMLGRYMGVRILSER 535
N A +M+ + RI +
Sbjct: 515 GNLNAPTIMIAEKIADRIRQHK 536
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 142/569 (24%), Positives = 227/569 (39%), Gaps = 116/569 (20%)
Query: 46 SYYDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDS--------PYGNPNITNSGSFSA 95
+YDYI++G G+AGC LA LS++ SVLLLE G S P NS ++
Sbjct: 3 QHYDYIIVGAGSAGCVLADRLSESGDHSVLLLEAGGSDKSIFIQMPTALSYPMNSEKYAW 62
Query: 96 ELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE------AGWDG 149
+ + R + R +VLGG + IN Y R E GW+
Sbjct: 63 QFETDAEADLDGRRLH-----CPRGKVLGGSSSINGMVYVRGHACDFDEWEEQGAKGWNY 117
Query: 150 RLV----NESYQWVEKKVVFR----------------PPMQRWQSALRDGLVEVG---VL 186
+ + W++ + +R P+ R A D E G
Sbjct: 118 QACLPYFRRAENWIDGEDEYRGGDGPLSTCAGNKMTLNPLYR---AFIDAGKEAGYPETS 174
Query: 187 PYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKA 246
YNG+ + + T+ + + A L S ++ V +IL K
Sbjct: 175 DYNGYQQEGFGPMHM--TVKNGVRASTSNAYLSRAKKRSNFKLIKGVVVQRILLEEK--- 229
Query: 247 RPVAHGVVFRDATDAEHIAYLRNG-PKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNIT 305
A GV F A + LR KNE+I SAG++GS QLL LSG+GP L+ +T
Sbjct: 230 --RAVGVEFELAGE------LRTCFAKNEVISSAGSIGSVQLLQLSGIGPKTVLEKAGVT 281
Query: 306 VVLDQPLVGQGMSDNPMNAIF---VPSPVPVEVSLIQ----VVG----ITQFG------- 347
V P VGQ + D+ + F P+ + L ++G +T+ G
Sbjct: 282 PVYHLPGVGQNLQDH-LEVYFQYHCQKPITLNGKLDWFSKGLIGTEWILTRKGLGATNHF 340
Query: 348 ---SYIEGASGVNFAGGS----PSPRPYRG-----GFIFEKIIGP---VSTGHLELRTRN 392
++I +G+ + P+ Y G G F+ +GP S G +E+ + N
Sbjct: 341 ESCAFIRSRAGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSAN 400
Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN 452
P D P + FNY D Q I +I+ + +F+ + ++ +N+
Sbjct: 401 PLDKPKIQFNYLSTERDRQDWRDCIRLTREILAQPAMDEFRGE--EIQPGINVA------ 452
Query: 453 LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGS 506
T ++Q+ ++ V + +H C++G V+D + +V G+ LRVVD S
Sbjct: 453 -------TDAEIDQWVKENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSS 505
Query: 507 TFYYSPGTNPQATVMMLGRYMGVRILSER 535
F P N A +M+ IL ++
Sbjct: 506 VFPTIPNGNLNAPTIMVAERAADLILHKQ 534
>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3
SV=1
Length = 556
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 217/560 (38%), Gaps = 107/560 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LAA L+++ SVLLLE G Y + A LA
Sbjct: 5 YDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAG---WDGR 150
+ + + + + + R + LGG + IN Y R ++A+ G W R
Sbjct: 62 YNWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYR 121
Query: 151 LV-------------NESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
V Y E V P + L +V+ GV T D L
Sbjct: 122 DVLPYFRKAETRDIGANDYHGGEGPVSVATPKND-NNVLFQAMVDAGVQAGYPRT-DDLN 179
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ Q + TA L+ A P L ++ HA+ +ILF K A
Sbjct: 180 GYQQEGFGPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK-----RA 234
Query: 251 HGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV + +E I A+ R E++V AGA+ SPQLL SGVG D L+A ++ +V D
Sbjct: 235 VGVHYLVGNSSEGIDAHARR----EVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHD 290
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ---------FGSYIEGASGVNFAG 360
P VGQ + D+ +++ VSL + F GAS AG
Sbjct: 291 LPGVGQNLQDHL--EVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAG 348
Query: 361 GSPSPRP-----------------YRGGFI-----FEKIIGPVST---GHLELRTRNPND 395
G R Y G F+ +G + T G + R+R+P
Sbjct: 349 GFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQ 408
Query: 396 TPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP 455
PS+ FNY +D Q I +II + ++ +S
Sbjct: 409 HPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSA-------------- 454
Query: 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYS 511
T L+ F R T +H C +G VVD +V G++ LRV+D S
Sbjct: 455 -DCKTDAELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRI 513
Query: 512 PGTNPQATVMMLGRYMGVRI 531
N AT +M+ + RI
Sbjct: 514 ITGNLNATTIMIAEKIVDRI 533
>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain B100) GN=betA PE=3 SV=1
Length = 556
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 217/560 (38%), Gaps = 107/560 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LAA L+++ SVLLLE G Y + A LA
Sbjct: 5 YDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAG---WDGR 150
+ + + + + + R + LGG + IN Y R ++A+ G W R
Sbjct: 62 YNWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYR 121
Query: 151 LV-------------NESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
V Y E V P + L +V+ GV T D L
Sbjct: 122 DVLPYFRKAETRDIGANDYHGGEGPVSVATPKND-NNVLFQAMVDAGVQAGYPRT-DDLN 179
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ Q + TA L+ A P L ++ HA+ +ILF K A
Sbjct: 180 GYQQEGFGPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK-----RA 234
Query: 251 HGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV + +E I A+ R E++V AGA+ SPQLL SGVG D L+A ++ +V D
Sbjct: 235 VGVHYLVGNSSEGIDAHARR----EVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHD 290
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ---------FGSYIEGASGVNFAG 360
P VGQ + D+ +++ VSL + F GAS AG
Sbjct: 291 LPGVGQNLQDHL--EVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAG 348
Query: 361 GSPSPRP-----------------YRGGFI-----FEKIIGPVST---GHLELRTRNPND 395
G R Y G F+ +G + T G + R+R+P
Sbjct: 349 GFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQ 408
Query: 396 TPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP 455
PS+ FNY +D Q I +II + ++ +S
Sbjct: 409 HPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSA-------------- 454
Query: 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYS 511
T L+ F R T +H C +G VVD +V G++ LRV+D S
Sbjct: 455 -DCKTDAELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRI 513
Query: 512 PGTNPQATVMMLGRYMGVRI 531
N AT +M+ + RI
Sbjct: 514 ITGNLNATTIMIAEKIVDRI 533
>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris
(strain 8004) GN=betA PE=3 SV=1
Length = 556
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 150/560 (26%), Positives = 217/560 (38%), Gaps = 107/560 (19%)
Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELA------- 98
YDYI+IG G+AG LAA L+++ SVLLLE G Y + A LA
Sbjct: 5 YDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDY---RLDFRTQMPAALAFPLQGRR 61
Query: 99 -DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAG---WDGR 150
+ + + + + + R + LGG + IN Y R ++A+ G W R
Sbjct: 62 YNWAYETEPEPHMDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWGYR 121
Query: 151 LV-------------NESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
V Y E V P + L +V+ GV T D L
Sbjct: 122 DVLPYFRKAETRDIGANDYHGGEGPVSVATPKND-NNVLFQAMVDAGVQAGYPRT-DDLN 179
Query: 198 GTKIGG------TIIDQNSQRHTAADLLEYANP-SGLTVLLHASVHKILFRNKGKARPVA 250
G + G T+ Q + TA L+ A P L ++ HA+ +ILF K A
Sbjct: 180 GYQQEGFGPMDRTVTPQGRRASTARGYLDMAKPRDSLHIVTHATTDRILFAGK-----RA 234
Query: 251 HGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
GV + +E I A+ R E++V AGA+ SPQLL SGVG D L+A ++ +V D
Sbjct: 235 VGVHYLVGNSSEGIDAHARR----EVLVCAGAIASPQLLQRSGVGAPDLLRALDVQLVHD 290
Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ---------FGSYIEGASGVNFAG 360
P VGQ + D+ +++ VSL + F GAS AG
Sbjct: 291 LPGVGQNLQDHL--EVYMQYACTKPVSLYPALQWWNQPAIGAEWLFAGTGTGASNQFEAG 348
Query: 361 GSPSPRP-----------------YRGGFI-----FEKIIGPVST---GHLELRTRNPND 395
G R Y G F+ +G + T G + R+R+P
Sbjct: 349 GFIRTREEFDWPNIQYHFLPVAINYNGSNAVKEHGFQAHVGSMRTPSRGRVHARSRDPRQ 408
Query: 396 TPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP 455
PS+ FNY +D Q I +II + ++ +S
Sbjct: 409 HPSILFNYQSTDQDWQEFRDAIRITREIIAQPALDPYRGREISPSA-------------- 454
Query: 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYS 511
T L+ F R T +H C +G VVD +V G++ LRV+D S
Sbjct: 455 -DCKTDAELDAFVRARAETAYHPSCSCAMGTDDMAVVDGQGRVHGMEGLRVIDASIMPRI 513
Query: 512 PGTNPQATVMMLGRYMGVRI 531
N AT +M+ + RI
Sbjct: 514 ITGNLNATTIMIAEKIVDRI 533
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,320,983
Number of Sequences: 539616
Number of extensions: 9713050
Number of successful extensions: 23908
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 23195
Number of HSP's gapped (non-prelim): 509
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)