Query 009241
Match_columns 539
No_of_seqs 236 out of 2043
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 22:09:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02785 Protein HOTHEAD 100.0 1.4E-80 3E-85 657.4 48.2 514 24-538 22-583 (587)
2 KOG1238 Glucose dehydrogenase/ 100.0 4.8E-78 1E-82 611.8 32.5 479 35-537 45-618 (623)
3 PRK02106 choline dehydrogenase 100.0 1.8E-69 4E-74 578.5 44.4 465 44-535 2-535 (560)
4 TIGR01810 betA choline dehydro 100.0 8.4E-69 1.8E-73 570.4 43.8 459 49-534 1-529 (532)
5 COG2303 BetA Choline dehydroge 100.0 5.1E-62 1.1E-66 513.4 36.6 465 44-534 4-536 (542)
6 TIGR02462 pyranose_ox pyranose 100.0 3.5E-49 7.6E-54 409.4 34.9 436 48-534 1-542 (544)
7 PF00732 GMC_oxred_N: GMC oxid 100.0 2.9E-41 6.3E-46 334.2 15.3 263 48-321 1-295 (296)
8 PF05199 GMC_oxred_C: GMC oxid 100.0 1.4E-31 3E-36 235.5 12.3 139 380-527 1-144 (144)
9 PRK06481 fumarate reductase fl 99.7 1.7E-16 3.6E-21 167.9 19.2 191 44-290 58-258 (506)
10 PRK12845 3-ketosteroid-delta-1 99.6 3.9E-15 8.5E-20 158.5 17.5 63 218-290 223-285 (564)
11 PRK07121 hypothetical protein; 99.6 6.8E-15 1.5E-19 155.7 17.0 194 44-290 17-246 (492)
12 PRK12835 3-ketosteroid-delta-1 99.6 9.6E-15 2.1E-19 156.5 16.2 62 220-290 221-282 (584)
13 PRK12844 3-ketosteroid-delta-1 99.6 2.5E-14 5.4E-19 152.8 17.3 63 218-290 214-276 (557)
14 PRK08274 tricarballylate dehyd 99.6 1.5E-14 3.2E-19 152.4 14.6 194 45-294 2-203 (466)
15 PF00890 FAD_binding_2: FAD bi 99.6 1.4E-14 3E-19 150.6 12.6 183 49-284 1-204 (417)
16 PLN00128 Succinate dehydrogena 99.6 5.3E-14 1.1E-18 151.7 17.3 59 218-285 193-252 (635)
17 PRK12837 3-ketosteroid-delta-1 99.6 4.3E-14 9.3E-19 149.9 15.0 58 223-290 185-242 (513)
18 PRK12834 putative FAD-binding 99.6 6.6E-14 1.4E-18 149.8 16.5 194 45-289 2-233 (549)
19 PRK06175 L-aspartate oxidase; 99.5 9.2E-14 2E-18 144.1 15.0 177 46-284 3-190 (433)
20 PRK12839 hypothetical protein; 99.5 2.1E-13 4.5E-18 145.8 15.8 63 218-289 220-282 (572)
21 PTZ00306 NADH-dependent fumara 99.5 2.4E-13 5.3E-18 156.3 17.2 196 42-286 404-623 (1167)
22 COG2081 Predicted flavoprotein 99.5 1.4E-13 3.1E-18 134.0 12.8 188 46-309 2-191 (408)
23 TIGR01813 flavo_cyto_c flavocy 99.5 1.3E-13 2.8E-18 144.2 13.1 64 218-290 136-199 (439)
24 PRK07843 3-ketosteroid-delta-1 99.5 6E-13 1.3E-17 142.3 17.1 63 219-291 215-277 (557)
25 PRK12843 putative FAD-binding 99.5 8.8E-13 1.9E-17 141.7 17.0 63 218-290 227-289 (578)
26 PRK12842 putative succinate de 99.5 1.2E-12 2.6E-17 140.8 18.0 62 219-290 221-282 (574)
27 PRK08958 sdhA succinate dehydr 99.5 6.2E-13 1.3E-17 142.8 15.3 58 218-284 149-207 (588)
28 PRK06452 sdhA succinate dehydr 99.5 7.4E-13 1.6E-17 141.8 15.6 56 218-283 142-198 (566)
29 PRK07573 sdhA succinate dehydr 99.5 7.7E-13 1.7E-17 143.2 15.8 54 221-284 179-233 (640)
30 PLN02815 L-aspartate oxidase 99.5 5.1E-13 1.1E-17 142.8 14.0 183 45-284 27-223 (594)
31 PTZ00139 Succinate dehydrogena 99.5 7.5E-13 1.6E-17 142.8 15.2 58 218-284 172-230 (617)
32 PRK06263 sdhA succinate dehydr 99.5 4.9E-13 1.1E-17 143.0 13.5 58 218-284 140-198 (543)
33 PRK09078 sdhA succinate dehydr 99.5 8.1E-13 1.7E-17 142.3 14.9 58 218-284 155-213 (598)
34 PRK06134 putative FAD-binding 99.5 1.9E-12 4.2E-17 139.2 17.6 63 218-290 223-285 (581)
35 PRK07395 L-aspartate oxidase; 99.4 4.4E-13 9.6E-18 142.7 11.8 57 218-284 140-198 (553)
36 PRK07804 L-aspartate oxidase; 99.4 1.5E-12 3.2E-17 138.8 15.7 37 44-80 13-50 (541)
37 PF03486 HI0933_like: HI0933-l 99.4 1E-13 2.2E-18 141.2 5.2 189 48-311 1-192 (409)
38 PRK09077 L-aspartate oxidase; 99.4 3.2E-12 6.9E-17 136.3 15.7 57 223-284 150-208 (536)
39 PRK08071 L-aspartate oxidase; 99.4 2.8E-12 6.2E-17 135.7 14.9 56 218-284 136-191 (510)
40 PRK08626 fumarate reductase fl 99.4 2.1E-12 4.6E-17 140.0 14.1 57 218-284 164-221 (657)
41 PRK07057 sdhA succinate dehydr 99.4 2.9E-12 6.4E-17 137.8 14.9 58 218-284 154-212 (591)
42 PRK08641 sdhA succinate dehydr 99.4 2.8E-12 6.1E-17 137.9 14.4 50 226-284 151-201 (589)
43 PRK09231 fumarate reductase fl 99.4 3.8E-12 8.3E-17 136.7 15.3 51 224-284 146-197 (582)
44 PRK05945 sdhA succinate dehydr 99.4 4.9E-12 1.1E-16 136.0 15.1 57 218-284 141-198 (575)
45 TIGR00551 nadB L-aspartate oxi 99.4 7E-12 1.5E-16 132.4 14.9 56 218-284 134-190 (488)
46 TIGR01176 fum_red_Fp fumarate 99.4 7.6E-12 1.6E-16 134.1 14.9 52 223-284 144-196 (580)
47 PRK11101 glpA sn-glycerol-3-ph 99.4 9.4E-12 2E-16 132.9 14.7 193 46-293 5-220 (546)
48 PRK08205 sdhA succinate dehydr 99.3 8E-12 1.7E-16 134.5 14.2 58 218-284 146-207 (583)
49 TIGR01812 sdhA_frdA_Gneg succi 99.3 1.1E-11 2.4E-16 133.6 14.8 57 218-284 135-192 (566)
50 PRK06069 sdhA succinate dehydr 99.3 1E-11 2.2E-16 133.7 14.3 57 218-284 143-201 (577)
51 PRK07512 L-aspartate oxidase; 99.3 1.1E-11 2.4E-16 131.3 13.6 56 218-284 142-198 (513)
52 PRK07803 sdhA succinate dehydr 99.3 7.2E-12 1.6E-16 135.6 11.9 35 46-80 7-42 (626)
53 TIGR01811 sdhA_Bsu succinate d 99.3 2.1E-11 4.6E-16 131.3 13.3 52 224-284 145-197 (603)
54 TIGR02061 aprA adenosine phosp 99.3 3.8E-11 8.3E-16 128.5 14.4 53 222-283 136-191 (614)
55 PRK08275 putative oxidoreducta 99.3 5.9E-11 1.3E-15 127.2 14.6 58 218-284 143-201 (554)
56 TIGR02734 crtI_fam phytoene de 99.2 2.2E-10 4.8E-15 122.0 17.8 72 205-290 212-283 (502)
57 PLN02464 glycerol-3-phosphate 99.2 6.9E-11 1.5E-15 127.7 13.4 65 218-292 238-304 (627)
58 COG0579 Predicted dehydrogenas 99.2 8E-11 1.7E-15 118.8 12.8 193 46-295 2-222 (429)
59 PRK06854 adenylylsulfate reduc 99.2 2E-10 4.4E-15 123.9 15.7 56 218-283 138-195 (608)
60 PRK04176 ribulose-1,5-biphosph 99.2 1.1E-10 2.4E-15 112.0 12.0 36 45-80 23-59 (257)
61 COG1233 Phytoene dehydrogenase 99.2 7.6E-10 1.7E-14 116.6 18.6 38 46-83 2-40 (487)
62 PF01266 DAO: FAD dependent ox 99.2 1.6E-11 3.4E-16 124.7 5.5 60 218-293 153-212 (358)
63 TIGR02730 carot_isom carotene 99.2 1.1E-08 2.3E-13 108.7 26.7 71 205-289 222-292 (493)
64 PRK13800 putative oxidoreducta 99.2 2E-10 4.4E-15 129.5 14.1 51 224-284 155-206 (897)
65 TIGR02485 CobZ_N-term precorri 99.2 1.6E-10 3.4E-15 120.5 12.0 61 218-290 129-190 (432)
66 TIGR02733 desat_CrtD C-3',4' d 99.2 3.6E-09 7.7E-14 112.4 22.0 71 208-288 228-299 (492)
67 COG1635 THI4 Ribulose 1,5-bisp 99.2 1.2E-10 2.6E-15 103.9 8.6 35 46-80 29-64 (262)
68 PF01946 Thi4: Thi4 family; PD 99.2 4.2E-11 9.1E-16 107.7 5.7 36 45-80 15-51 (230)
69 PRK12266 glpD glycerol-3-phosp 99.1 1.8E-10 3.8E-15 122.1 11.2 37 44-80 3-40 (508)
70 TIGR00292 thiazole biosynthesi 99.1 3.1E-10 6.7E-15 108.6 11.5 36 45-80 19-55 (254)
71 COG1053 SdhA Succinate dehydro 99.1 2.1E-10 4.6E-15 121.1 11.1 57 218-283 144-202 (562)
72 PLN02661 Putative thiazole syn 99.1 2.2E-10 4.9E-15 112.5 10.1 36 45-80 90-127 (357)
73 PRK08401 L-aspartate oxidase; 99.1 5.8E-10 1.3E-14 117.1 13.9 32 48-79 2-34 (466)
74 PRK13369 glycerol-3-phosphate 99.1 6.3E-10 1.4E-14 118.0 13.1 38 43-80 2-40 (502)
75 PTZ00383 malate:quinone oxidor 99.1 1.1E-09 2.3E-14 114.7 14.3 36 44-79 42-80 (497)
76 COG0578 GlpA Glycerol-3-phosph 99.1 2.7E-09 5.9E-14 110.0 16.6 78 221-310 173-254 (532)
77 PRK12409 D-amino acid dehydrog 99.1 1.1E-09 2.3E-14 113.7 13.7 33 48-80 2-35 (410)
78 KOG0042 Glycerol-3-phosphate d 99.1 2.1E-10 4.6E-15 114.7 7.5 71 208-287 217-291 (680)
79 TIGR01320 mal_quin_oxido malat 99.1 4.4E-09 9.5E-14 110.4 17.7 66 218-294 184-250 (483)
80 TIGR01373 soxB sarcosine oxida 99.1 1.8E-09 3.9E-14 111.9 14.5 36 45-80 28-66 (407)
81 PRK11259 solA N-methyltryptoph 99.1 1.3E-09 2.8E-14 111.7 12.7 35 46-80 2-37 (376)
82 PRK05257 malate:quinone oxidor 99.0 4.5E-09 9.7E-14 110.4 16.2 36 45-80 3-41 (494)
83 TIGR03329 Phn_aa_oxid putative 99.0 7.7E-10 1.7E-14 116.2 10.3 37 44-80 21-60 (460)
84 COG0029 NadB Aspartate oxidase 99.0 2.9E-09 6.3E-14 106.6 12.7 57 218-283 139-196 (518)
85 TIGR01377 soxA_mon sarcosine o 99.0 2.7E-09 5.9E-14 109.5 12.4 33 48-80 1-34 (380)
86 PF12831 FAD_oxidored: FAD dep 99.0 3.1E-10 6.8E-15 117.8 5.1 59 221-293 99-157 (428)
87 PRK00711 D-amino acid dehydrog 99.0 5.5E-09 1.2E-13 108.7 13.6 31 49-79 2-33 (416)
88 PRK11728 hydroxyglutarate oxid 99.0 4.2E-09 9.2E-14 108.5 12.1 34 47-80 2-38 (393)
89 PRK10157 putative oxidoreducta 98.9 3.3E-09 7.2E-14 110.2 10.2 36 46-81 4-40 (428)
90 KOG2404 Fumarate reductase, fl 98.9 5.9E-09 1.3E-13 98.1 9.0 55 225-289 158-213 (477)
91 COG3573 Predicted oxidoreducta 98.9 2.5E-08 5.4E-13 94.4 13.2 35 46-80 4-39 (552)
92 COG0644 FixC Dehydrogenases (f 98.9 8.4E-09 1.8E-13 106.2 11.1 36 46-81 2-38 (396)
93 TIGR03364 HpnW_proposed FAD de 98.9 8.2E-09 1.8E-13 105.4 9.6 33 48-80 1-34 (365)
94 KOG2820 FAD-dependent oxidored 98.8 1.8E-08 3.9E-13 95.8 10.6 40 43-82 3-43 (399)
95 TIGR00275 flavoprotein, HI0933 98.8 1.9E-08 4.1E-13 103.6 11.9 30 51-80 1-31 (400)
96 PRK05192 tRNA uridine 5-carbox 98.8 1.6E-08 3.4E-13 106.6 11.3 35 45-79 2-37 (618)
97 PRK10015 oxidoreductase; Provi 98.8 2.6E-08 5.7E-13 103.4 12.7 36 46-81 4-40 (429)
98 PTZ00363 rab-GDP dissociation 98.8 4.6E-08 1E-12 101.0 14.4 43 44-86 1-44 (443)
99 PRK13339 malate:quinone oxidor 98.8 1.1E-07 2.3E-12 99.4 16.8 34 45-78 4-40 (497)
100 PRK13977 myosin-cross-reactive 98.8 3E-08 6.6E-13 103.5 12.0 63 218-284 232-294 (576)
101 PRK01747 mnmC bifunctional tRN 98.8 5.2E-08 1.1E-12 107.1 12.7 33 47-79 260-293 (662)
102 PRK06185 hypothetical protein; 98.7 8.5E-08 1.8E-12 99.4 12.4 37 44-80 3-40 (407)
103 COG0665 DadA Glycine/D-amino a 98.7 1.3E-07 2.9E-12 97.2 13.6 36 45-80 2-38 (387)
104 KOG4254 Phytoene desaturase [C 98.7 6.5E-07 1.4E-11 88.4 16.9 72 206-291 258-329 (561)
105 PRK05976 dihydrolipoamide dehy 98.7 1.5E-07 3.2E-12 99.5 11.7 36 44-79 1-37 (472)
106 PLN02172 flavin-containing mon 98.7 1.7E-07 3.6E-12 97.9 11.7 36 45-80 8-44 (461)
107 PRK06467 dihydrolipoamide dehy 98.6 1.7E-07 3.7E-12 98.7 11.7 35 45-79 2-37 (471)
108 PF13738 Pyr_redox_3: Pyridine 98.6 6E-08 1.3E-12 90.2 7.2 59 218-291 87-146 (203)
109 PF06039 Mqo: Malate:quinone o 98.6 9.2E-07 2E-11 88.8 15.6 66 218-294 187-254 (488)
110 PRK07364 2-octaprenyl-6-methox 98.6 3.4E-07 7.4E-12 95.2 13.4 39 42-80 13-52 (415)
111 KOG1298 Squalene monooxygenase 98.6 9.1E-08 2E-12 92.5 8.2 55 221-286 157-211 (509)
112 PF01134 GIDA: Glucose inhibit 98.6 9.2E-08 2E-12 95.7 8.4 47 222-283 106-152 (392)
113 PRK08773 2-octaprenyl-3-methyl 98.6 4.7E-07 1E-11 93.4 13.1 36 45-80 4-40 (392)
114 PRK05675 sdhA succinate dehydr 98.6 5.4E-07 1.2E-11 96.9 13.7 58 218-284 132-190 (570)
115 PRK07818 dihydrolipoamide dehy 98.6 4.4E-07 9.5E-12 95.7 12.4 34 46-79 3-37 (466)
116 PLN02985 squalene monooxygenas 98.6 3.3E-07 7.2E-12 97.1 11.0 37 44-80 40-77 (514)
117 PLN02507 glutathione reductase 98.6 5.8E-07 1.3E-11 95.2 12.8 33 45-77 23-56 (499)
118 PRK06416 dihydrolipoamide dehy 98.6 4.3E-07 9.3E-12 95.7 11.7 34 46-79 3-37 (462)
119 PRK07208 hypothetical protein; 98.5 1.2E-06 2.6E-11 92.9 15.0 39 44-82 1-40 (479)
120 PRK05249 soluble pyridine nucl 98.5 5.6E-07 1.2E-11 94.8 11.6 36 45-80 3-39 (461)
121 PRK07251 pyridine nucleotide-d 98.5 4.9E-07 1.1E-11 94.6 10.8 34 47-80 3-37 (438)
122 PRK06847 hypothetical protein; 98.5 4.9E-07 1.1E-11 92.6 10.1 36 45-80 2-38 (375)
123 TIGR02032 GG-red-SF geranylger 98.5 4.8E-07 1E-11 89.2 9.4 33 48-80 1-34 (295)
124 KOG2844 Dimethylglycine dehydr 98.5 3.9E-07 8.5E-12 93.9 8.5 76 202-293 174-252 (856)
125 KOG2415 Electron transfer flav 98.5 3.9E-07 8.4E-12 88.9 7.9 66 221-293 192-268 (621)
126 COG3380 Predicted NAD/FAD-depe 98.5 1E-06 2.2E-11 81.6 10.2 32 49-80 3-35 (331)
127 PRK08244 hypothetical protein; 98.5 1.1E-06 2.3E-11 93.5 12.0 34 47-80 2-36 (493)
128 PRK05329 anaerobic glycerol-3- 98.5 3.8E-06 8.2E-11 86.2 15.1 57 219-287 266-322 (422)
129 COG2072 TrkA Predicted flavopr 98.4 1.8E-06 3.9E-11 89.7 12.7 37 44-80 5-43 (443)
130 PLN02697 lycopene epsilon cycl 98.4 1.4E-06 3.1E-11 91.9 11.9 35 45-79 106-141 (529)
131 TIGR02023 BchP-ChlP geranylger 98.4 7.3E-07 1.6E-11 91.7 9.5 31 48-78 1-32 (388)
132 PRK06126 hypothetical protein; 98.4 3.8E-06 8.3E-11 90.5 15.4 36 45-80 5-41 (545)
133 PRK07045 putative monooxygenas 98.4 2.4E-06 5.3E-11 87.9 13.1 37 45-81 3-40 (388)
134 PRK07608 ubiquinone biosynthes 98.4 2.4E-06 5.1E-11 88.0 12.5 35 46-80 4-39 (388)
135 TIGR01988 Ubi-OHases Ubiquinon 98.4 1.9E-06 4.1E-11 88.6 11.8 33 49-81 1-34 (385)
136 PRK07333 2-octaprenyl-6-methox 98.4 1.5E-06 3.2E-11 90.0 10.8 33 48-80 2-37 (403)
137 PRK06183 mhpA 3-(3-hydroxyphen 98.4 2.4E-06 5.1E-11 91.8 12.2 36 45-80 8-44 (538)
138 PLN02463 lycopene beta cyclase 98.4 2.6E-06 5.7E-11 88.4 12.0 35 45-79 26-61 (447)
139 TIGR03378 glycerol3P_GlpB glyc 98.4 5.4E-06 1.2E-10 84.1 13.9 60 219-290 270-329 (419)
140 TIGR00136 gidA glucose-inhibit 98.4 1.9E-06 4.1E-11 91.0 10.4 32 48-79 1-33 (617)
141 PRK07190 hypothetical protein; 98.4 2.2E-06 4.8E-11 90.4 10.8 35 46-80 4-39 (487)
142 PRK08243 4-hydroxybenzoate 3-m 98.4 2.4E-06 5.1E-11 88.1 10.8 34 47-80 2-36 (392)
143 TIGR02028 ChlP geranylgeranyl 98.3 4.6E-06 9.9E-11 86.0 12.7 32 48-79 1-33 (398)
144 TIGR03143 AhpF_homolog putativ 98.3 1.5E-06 3.2E-11 93.4 9.1 35 45-79 2-37 (555)
145 PRK05714 2-octaprenyl-3-methyl 98.3 3E-06 6.4E-11 87.8 11.0 33 47-79 2-35 (405)
146 TIGR01816 sdhA_forward succina 98.3 4.6E-06 1E-10 89.7 12.8 57 218-284 125-182 (565)
147 PTZ00058 glutathione reductase 98.3 5E-07 1.1E-11 96.3 5.2 34 46-79 47-81 (561)
148 KOG1335 Dihydrolipoamide dehyd 98.3 4.7E-06 1E-10 80.8 11.2 35 46-80 38-73 (506)
149 PRK08020 ubiF 2-octaprenyl-3-m 98.3 3.9E-06 8.5E-11 86.5 11.6 36 45-80 3-39 (391)
150 PF01494 FAD_binding_3: FAD bi 98.3 1.8E-07 3.9E-12 94.8 1.4 35 47-81 1-36 (356)
151 PRK06834 hypothetical protein; 98.3 4.2E-06 9.1E-11 88.4 11.7 34 47-80 3-37 (488)
152 TIGR01421 gluta_reduc_1 glutat 98.3 3.6E-07 7.8E-12 95.7 3.6 34 46-79 1-35 (450)
153 COG2509 Uncharacterized FAD-de 98.3 5.6E-06 1.2E-10 82.5 11.5 52 216-281 177-228 (486)
154 PRK08163 salicylate hydroxylas 98.3 3.8E-06 8.3E-11 86.7 11.0 36 45-80 2-38 (396)
155 PRK06370 mercuric reductase; V 98.3 4.7E-07 1E-11 95.4 4.2 36 44-79 2-38 (463)
156 PRK06116 glutathione reductase 98.3 4.7E-07 1E-11 95.1 4.1 35 45-79 2-37 (450)
157 PRK06184 hypothetical protein; 98.3 2.8E-06 6E-11 90.5 9.7 34 47-80 3-37 (502)
158 PRK08013 oxidoreductase; Provi 98.3 4E-06 8.7E-11 86.6 10.3 34 47-80 3-37 (400)
159 COG0654 UbiH 2-polyprenyl-6-me 98.3 7.7E-06 1.7E-10 84.1 12.2 32 47-78 2-34 (387)
160 KOG2960 Protein involved in th 98.3 1.1E-06 2.3E-11 78.2 4.8 34 47-80 76-112 (328)
161 COG1249 Lpd Pyruvate/2-oxoglut 98.3 5.8E-07 1.3E-11 92.6 3.6 35 45-79 2-37 (454)
162 TIGR01424 gluta_reduc_2 glutat 98.2 6.3E-07 1.4E-11 93.9 3.5 33 47-79 2-35 (446)
163 PRK11445 putative oxidoreducta 98.2 4.3E-06 9.4E-11 84.7 9.5 33 48-80 2-34 (351)
164 PF00743 FMO-like: Flavin-bind 98.2 1.4E-06 3.1E-11 92.2 6.1 32 49-80 3-35 (531)
165 PRK07588 hypothetical protein; 98.2 3.7E-06 8E-11 86.7 9.1 32 49-80 2-34 (391)
166 PRK15317 alkyl hydroperoxide r 98.2 5.2E-06 1.1E-10 88.6 10.3 34 45-78 209-243 (517)
167 PF13450 NAD_binding_8: NAD(P) 98.2 9.8E-07 2.1E-11 65.9 3.3 29 52-80 1-30 (68)
168 TIGR01292 TRX_reduct thioredox 98.2 3.6E-06 7.7E-11 83.3 8.4 32 48-79 1-33 (300)
169 TIGR01984 UbiH 2-polyprenyl-6- 98.2 9.1E-06 2E-10 83.5 11.4 33 49-81 1-35 (382)
170 KOG4716 Thioredoxin reductase 98.2 7.7E-06 1.7E-10 78.0 9.4 36 44-79 16-52 (503)
171 TIGR01790 carotene-cycl lycope 98.2 7.4E-06 1.6E-10 84.3 10.4 32 49-80 1-33 (388)
172 KOG2853 Possible oxidoreductas 98.2 1.1E-05 2.3E-10 77.2 10.4 36 46-81 85-125 (509)
173 TIGR03140 AhpF alkyl hydropero 98.2 6.5E-06 1.4E-10 87.8 9.8 33 45-77 210-243 (515)
174 PRK14694 putative mercuric red 98.2 1.3E-06 2.7E-11 92.2 4.2 35 45-79 4-39 (468)
175 KOG0405 Pyridine nucleotide-di 98.2 5.8E-06 1.3E-10 79.2 8.1 35 45-79 18-53 (478)
176 PRK07845 flavoprotein disulfid 98.2 1.6E-05 3.5E-10 83.7 12.3 31 49-79 3-34 (466)
177 PRK06115 dihydrolipoamide dehy 98.2 1.3E-06 2.8E-11 92.0 3.8 33 47-79 3-36 (466)
178 PLN02546 glutathione reductase 98.1 1.2E-06 2.6E-11 93.4 3.3 33 45-77 77-110 (558)
179 PRK08132 FAD-dependent oxidore 98.1 3.1E-05 6.7E-10 83.5 14.2 36 45-80 21-57 (547)
180 PRK06617 2-octaprenyl-6-methox 98.1 1.9E-05 4.2E-10 80.8 11.9 33 48-80 2-35 (374)
181 PRK08010 pyridine nucleotide-d 98.1 1.7E-06 3.7E-11 90.6 4.1 34 47-80 3-37 (441)
182 TIGR02731 phytoene_desat phyto 98.1 5.1E-05 1.1E-09 79.8 15.3 34 49-82 1-35 (453)
183 TIGR02053 MerA mercuric reduct 98.1 1.6E-06 3.5E-11 91.4 3.8 32 48-79 1-33 (463)
184 PF05834 Lycopene_cycl: Lycope 98.1 1.1E-05 2.3E-10 82.5 9.6 32 49-80 1-35 (374)
185 PTZ00153 lipoamide dehydrogena 98.1 1.6E-06 3.5E-11 93.8 3.5 33 46-78 115-148 (659)
186 COG0445 GidA Flavin-dependent 98.1 1E-05 2.3E-10 82.3 8.5 34 46-79 3-37 (621)
187 PRK13748 putative mercuric red 98.1 2.2E-06 4.7E-11 92.7 4.0 34 46-79 97-131 (561)
188 TIGR03377 glycerol3P_GlpA glyc 98.1 3E-05 6.5E-10 82.9 12.4 65 218-293 134-199 (516)
189 PRK07236 hypothetical protein; 98.1 8.3E-05 1.8E-09 76.5 15.1 34 47-80 6-40 (386)
190 TIGR01423 trypano_reduc trypan 98.1 2.7E-06 5.9E-11 89.6 4.1 33 46-78 2-36 (486)
191 TIGR02360 pbenz_hydroxyl 4-hyd 98.1 1.7E-05 3.7E-10 81.6 9.7 34 47-80 2-36 (390)
192 PRK06327 dihydrolipoamide dehy 98.1 2.6E-06 5.7E-11 89.9 3.8 34 45-78 2-36 (475)
193 PLN00093 geranylgeranyl diphos 98.1 3.3E-06 7E-11 88.1 4.3 36 44-79 36-72 (450)
194 TIGR01350 lipoamide_DH dihydro 98.0 2.8E-06 6E-11 89.6 3.7 32 47-78 1-33 (461)
195 PRK06292 dihydrolipoamide dehy 98.0 3.8E-06 8.2E-11 88.6 4.3 33 46-78 2-35 (460)
196 PTZ00052 thioredoxin reductase 98.0 3.8E-06 8.2E-11 89.1 3.9 33 46-78 4-37 (499)
197 COG0562 Glf UDP-galactopyranos 98.0 4.8E-06 1E-10 79.2 4.0 35 47-81 1-36 (374)
198 PLN02487 zeta-carotene desatur 98.0 0.00018 4E-09 76.8 15.7 65 218-288 301-365 (569)
199 PRK06753 hypothetical protein; 98.0 9.3E-05 2E-09 75.7 13.1 32 49-80 2-34 (373)
200 TIGR01372 soxA sarcosine oxida 97.9 6.7E-05 1.5E-09 86.0 12.6 65 218-293 357-421 (985)
201 PRK09897 hypothetical protein; 97.9 5.7E-05 1.2E-09 79.9 10.8 33 48-80 2-37 (534)
202 PRK07538 hypothetical protein; 97.9 6.8E-05 1.5E-09 77.8 11.3 32 49-80 2-34 (413)
203 PRK05868 hypothetical protein; 97.9 0.00012 2.6E-09 74.8 12.9 32 49-80 3-35 (372)
204 KOG1399 Flavin-containing mono 97.9 6.2E-05 1.3E-09 77.5 9.9 34 47-80 6-40 (448)
205 TIGR01316 gltA glutamate synth 97.9 0.00061 1.3E-08 71.4 17.5 36 46-81 132-168 (449)
206 PRK07494 2-octaprenyl-6-methox 97.9 1.2E-05 2.7E-10 82.7 4.4 36 45-80 5-41 (388)
207 TIGR01438 TGR thioredoxin and 97.9 9.4E-06 2E-10 85.7 3.6 32 47-78 2-34 (484)
208 PRK14727 putative mercuric red 97.9 1E-05 2.2E-10 85.5 3.8 35 46-80 15-50 (479)
209 PRK07846 mycothione reductase; 97.8 1.2E-05 2.6E-10 84.3 4.0 32 47-79 1-32 (451)
210 PF04820 Trp_halogenase: Trypt 97.8 1.6E-05 3.5E-10 83.1 4.8 34 49-82 1-38 (454)
211 TIGR00031 UDP-GALP_mutase UDP- 97.8 1.4E-05 3E-10 80.8 3.9 34 48-81 2-36 (377)
212 PRK09126 hypothetical protein; 97.8 1.3E-05 2.8E-10 82.6 3.7 34 47-80 3-37 (392)
213 TIGR03452 mycothione_red mycot 97.8 1.4E-05 3.1E-10 83.7 4.0 32 47-79 2-33 (452)
214 KOG2665 Predicted FAD-dependen 97.8 8.8E-05 1.9E-09 70.4 8.1 37 44-80 45-84 (453)
215 COG0492 TrxB Thioredoxin reduc 97.8 1.8E-05 3.9E-10 77.6 3.5 35 46-80 2-38 (305)
216 KOG0029 Amine oxidase [Seconda 97.8 2.1E-05 4.5E-10 82.5 4.1 37 45-81 13-50 (501)
217 PF13434 K_oxygenase: L-lysine 97.8 6.2E-05 1.3E-09 75.5 7.2 34 47-80 2-37 (341)
218 PRK08849 2-octaprenyl-3-methyl 97.7 2.2E-05 4.9E-10 80.6 3.8 33 47-79 3-36 (384)
219 PRK12775 putative trifunctiona 97.7 0.0011 2.4E-08 75.9 17.4 35 47-81 430-465 (1006)
220 PRK06912 acoL dihydrolipoamide 97.7 2.3E-05 5E-10 82.4 3.5 32 49-80 2-34 (458)
221 PRK08850 2-octaprenyl-6-methox 97.7 2.6E-05 5.7E-10 80.7 3.8 33 46-78 3-36 (405)
222 TIGR03862 flavo_PP4765 unchara 97.7 0.00048 1E-08 69.5 12.0 111 173-311 56-167 (376)
223 KOG2852 Possible oxidoreductas 97.6 8.5E-05 1.8E-09 69.6 5.9 64 218-293 153-217 (380)
224 PF06100 Strep_67kDa_ant: Stre 97.6 0.0013 2.9E-08 67.2 14.9 61 219-283 214-274 (500)
225 PTZ00367 squalene epoxidase; P 97.6 4.1E-05 8.9E-10 81.8 4.2 35 45-79 31-66 (567)
226 TIGR03219 salicylate_mono sali 97.6 0.00072 1.6E-08 70.2 13.1 32 49-80 2-35 (414)
227 PLN02268 probable polyamine ox 97.6 4.1E-05 8.9E-10 80.1 3.7 35 49-83 2-37 (435)
228 PLN02676 polyamine oxidase 97.6 7.8E-05 1.7E-09 78.7 5.8 37 46-82 25-63 (487)
229 TIGR02352 thiamin_ThiO glycine 97.6 0.00021 4.6E-09 71.9 8.0 68 204-287 126-196 (337)
230 COG1231 Monoamine oxidase [Ami 97.6 5.9E-05 1.3E-09 75.7 3.8 37 45-81 5-42 (450)
231 KOG2311 NAD/FAD-utilizing prot 97.6 0.0005 1.1E-08 68.9 10.1 34 45-78 26-60 (679)
232 PRK11883 protoporphyrinogen ox 97.6 5E-05 1.1E-09 79.8 3.5 34 49-82 2-38 (451)
233 PRK07233 hypothetical protein; 97.5 5.8E-05 1.3E-09 78.9 3.5 35 49-83 1-36 (434)
234 PLN02576 protoporphyrinogen ox 97.5 8.4E-05 1.8E-09 79.2 4.3 38 45-82 10-49 (496)
235 PRK06996 hypothetical protein; 97.5 9E-05 1.9E-09 76.6 4.3 36 45-80 9-49 (398)
236 PLN02568 polyamine oxidase 97.5 9.2E-05 2E-09 78.9 4.3 38 45-82 3-46 (539)
237 PF13454 NAD_binding_9: FAD-NA 97.5 0.002 4.3E-08 57.0 11.8 30 51-80 1-36 (156)
238 COG2907 Predicted NAD/FAD-bind 97.4 0.0024 5.3E-08 61.8 12.9 40 47-86 8-47 (447)
239 TIGR01989 COQ6 Ubiquinone bios 97.4 9.2E-05 2E-09 77.4 3.7 32 48-79 1-37 (437)
240 PRK10262 thioredoxin reductase 97.4 9.6E-05 2.1E-09 73.9 3.6 34 45-78 4-38 (321)
241 PRK05732 2-octaprenyl-6-methox 97.4 0.0001 2.2E-09 76.1 3.8 33 46-78 2-38 (395)
242 COG1148 HdrA Heterodisulfide r 97.4 0.00011 2.4E-09 73.7 3.6 33 48-80 125-158 (622)
243 PF07992 Pyr_redox_2: Pyridine 97.4 0.00012 2.6E-09 67.6 3.4 32 49-80 1-33 (201)
244 PRK08294 phenol 2-monooxygenas 97.3 0.00017 3.7E-09 78.7 4.4 37 44-80 29-67 (634)
245 TIGR03197 MnmC_Cterm tRNA U-34 97.3 0.0015 3.1E-08 67.1 10.8 50 218-283 141-190 (381)
246 COG3349 Uncharacterized conser 97.3 0.00015 3.3E-09 74.2 3.4 34 49-82 2-36 (485)
247 TIGR00562 proto_IX_ox protopor 97.3 0.00016 3.4E-09 76.4 3.6 35 48-82 3-42 (462)
248 TIGR01789 lycopene_cycl lycope 97.3 0.00018 3.8E-09 73.4 3.4 32 49-80 1-35 (370)
249 PRK05335 tRNA (uracil-5-)-meth 97.3 0.00018 3.9E-09 73.1 3.2 33 48-80 3-36 (436)
250 TIGR03315 Se_ygfK putative sel 97.2 0.00026 5.5E-09 79.8 4.5 36 46-81 536-572 (1012)
251 PRK12416 protoporphyrinogen ox 97.2 0.0002 4.2E-09 75.7 3.4 34 49-82 3-43 (463)
252 PRK13512 coenzyme A disulfide 97.2 0.0023 4.9E-08 67.0 11.0 32 49-80 3-37 (438)
253 COG3075 GlpB Anaerobic glycero 97.2 0.00027 5.8E-09 67.7 3.4 34 47-80 2-36 (421)
254 PRK09564 coenzyme A disulfide 97.2 0.0023 5E-08 67.2 10.8 32 49-80 2-36 (444)
255 PLN02927 antheraxanthin epoxid 97.2 0.0003 6.5E-09 76.0 3.7 35 45-79 79-114 (668)
256 PRK12831 putative oxidoreducta 97.1 0.00039 8.5E-09 73.1 4.4 36 45-80 138-174 (464)
257 COG1232 HemY Protoporphyrinoge 97.1 0.00034 7.4E-09 71.8 3.4 32 50-81 3-37 (444)
258 PLN02529 lysine-specific histo 97.0 0.00053 1.2E-08 75.1 4.0 36 46-81 159-195 (738)
259 PRK06475 salicylate hydroxylas 97.0 0.00049 1.1E-08 71.1 3.4 32 49-80 4-36 (400)
260 PLN02328 lysine-specific histo 97.0 0.00065 1.4E-08 74.8 4.3 38 45-82 236-274 (808)
261 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.00052 1.1E-08 70.2 3.3 33 48-80 1-34 (433)
262 PRK12810 gltD glutamate syntha 96.9 0.0008 1.7E-08 71.0 4.4 36 46-81 142-178 (471)
263 KOG2614 Kynurenine 3-monooxyge 96.9 0.00071 1.5E-08 67.2 3.3 34 47-80 2-36 (420)
264 PRK12779 putative bifunctional 96.9 0.00089 1.9E-08 76.0 4.4 35 46-80 305-340 (944)
265 TIGR02732 zeta_caro_desat caro 96.9 0.00071 1.5E-08 71.4 3.4 65 218-288 225-289 (474)
266 PLN02612 phytoene desaturase 96.9 0.001 2.2E-08 71.7 4.6 36 46-81 92-128 (567)
267 PF00996 GDI: GDP dissociation 96.8 0.00097 2.1E-08 68.5 3.8 40 44-83 1-41 (438)
268 PRK12769 putative oxidoreducta 96.8 0.001 2.3E-08 73.1 4.0 35 46-80 326-361 (654)
269 PF00070 Pyr_redox: Pyridine n 96.8 0.0014 3E-08 50.6 3.4 32 50-81 2-34 (80)
270 PRK09853 putative selenate red 96.7 0.0014 3E-08 73.7 4.5 36 46-81 538-574 (1019)
271 PRK12778 putative bifunctional 96.7 0.0014 2.9E-08 73.5 4.2 35 46-80 430-465 (752)
272 PRK11749 dihydropyrimidine deh 96.6 0.0018 3.9E-08 68.2 4.1 35 46-80 139-174 (457)
273 PLN02852 ferredoxin-NADP+ redu 96.6 0.0023 5E-08 67.1 4.8 36 47-82 26-64 (491)
274 PRK12770 putative glutamate sy 96.6 0.0021 4.6E-08 65.1 4.3 46 34-81 7-53 (352)
275 KOG0685 Flavin-containing amin 96.6 0.0018 4E-08 65.3 3.5 35 47-81 21-57 (498)
276 PRK04965 NADH:flavorubredoxin 96.5 0.021 4.5E-07 58.6 11.1 33 48-80 142-175 (377)
277 PRK12814 putative NADPH-depend 96.5 0.0025 5.3E-08 70.0 4.3 36 46-81 192-228 (652)
278 TIGR01350 lipoamide_DH dihydro 96.4 0.018 4E-07 60.7 10.2 33 48-80 171-204 (461)
279 TIGR01318 gltD_gamma_fam gluta 96.4 0.0029 6.3E-08 66.6 4.1 35 46-80 140-175 (467)
280 PLN03000 amine oxidase 96.4 0.0026 5.6E-08 70.4 3.7 37 46-82 183-220 (881)
281 PLN02976 amine oxidase 96.4 0.0027 5.8E-08 72.9 3.8 36 46-81 692-728 (1713)
282 COG3634 AhpF Alkyl hydroperoxi 96.3 0.0018 3.8E-08 62.5 1.9 60 222-291 400-460 (520)
283 PRK09754 phenylpropionate diox 96.2 0.036 7.8E-07 57.2 11.0 32 49-80 146-178 (396)
284 KOG3855 Monooxygenase involved 96.2 0.0044 9.6E-08 61.4 3.9 37 44-80 33-74 (481)
285 PRK07818 dihydrolipoamide dehy 96.2 0.033 7.1E-07 58.8 10.8 54 223-287 224-277 (466)
286 KOG1276 Protoporphyrinogen oxi 96.2 0.0045 9.8E-08 61.7 3.8 35 47-81 11-48 (491)
287 PRK06567 putative bifunctional 96.1 0.0044 9.5E-08 69.1 3.9 34 46-79 382-416 (1028)
288 PRK08255 salicylyl-CoA 5-hydro 96.1 0.0037 8E-08 70.0 3.3 32 49-80 2-36 (765)
289 PRK12809 putative oxidoreducta 96.1 0.0047 1E-07 67.8 4.0 36 46-81 309-345 (639)
290 TIGR01317 GOGAT_sm_gam glutama 96.0 0.0054 1.2E-07 64.9 3.9 34 47-80 143-177 (485)
291 PRK12771 putative glutamate sy 96.0 0.0051 1.1E-07 66.6 3.6 35 47-81 137-172 (564)
292 PRK06327 dihydrolipoamide dehy 96.0 0.041 8.9E-07 58.2 10.3 32 49-80 185-217 (475)
293 PTZ00188 adrenodoxin reductase 96.0 0.0059 1.3E-07 63.3 3.7 35 48-82 40-76 (506)
294 PRK05976 dihydrolipoamide dehy 95.9 0.061 1.3E-06 56.9 11.0 33 48-80 181-214 (472)
295 PRK14989 nitrite reductase sub 95.8 0.051 1.1E-06 61.3 10.7 58 223-293 198-255 (847)
296 TIGR03140 AhpF alkyl hydropero 95.8 0.092 2E-06 56.2 12.0 55 225-289 401-456 (515)
297 TIGR02374 nitri_red_nirB nitri 95.7 0.044 9.6E-07 61.6 9.7 31 50-80 1-35 (785)
298 PRK15317 alkyl hydroperoxide r 95.6 0.097 2.1E-06 56.0 11.5 56 225-290 400-456 (517)
299 PRK12831 putative oxidoreducta 95.6 0.066 1.4E-06 56.4 9.7 31 49-79 283-314 (464)
300 COG4529 Uncharacterized protei 95.6 0.16 3.5E-06 52.0 11.9 33 48-80 2-38 (474)
301 TIGR02374 nitri_red_nirB nitri 95.6 0.068 1.5E-06 60.1 10.3 32 49-80 142-174 (785)
302 PRK13984 putative oxidoreducta 95.5 0.013 2.8E-07 64.1 4.2 35 46-80 282-317 (604)
303 PRK10262 thioredoxin reductase 95.4 0.17 3.6E-06 50.5 11.7 56 223-288 196-253 (321)
304 PRK09564 coenzyme A disulfide 95.4 0.082 1.8E-06 55.4 9.6 33 48-80 150-183 (444)
305 COG1249 Lpd Pyruvate/2-oxoglut 95.2 0.11 2.4E-06 54.0 9.8 32 49-80 175-207 (454)
306 COG3486 IucD Lysine/ornithine 95.2 0.13 2.9E-06 51.3 9.8 38 44-81 2-41 (436)
307 PRK09754 phenylpropionate diox 95.2 0.018 3.9E-07 59.4 4.1 34 48-81 4-40 (396)
308 TIGR01292 TRX_reduct thioredox 94.9 0.27 5.8E-06 48.3 11.5 32 48-79 142-174 (300)
309 PRK08010 pyridine nucleotide-d 94.9 0.1 2.2E-06 54.7 8.7 31 49-79 160-191 (441)
310 KOG1439 RAB proteins geranylge 94.9 0.017 3.7E-07 57.2 2.5 41 44-84 1-42 (440)
311 KOG3851 Sulfide:quinone oxidor 94.9 0.027 5.8E-07 54.1 3.7 37 45-81 37-76 (446)
312 PRK14727 putative mercuric red 94.9 0.11 2.4E-06 55.1 8.8 30 49-78 190-220 (479)
313 KOG2403 Succinate dehydrogenas 94.8 0.047 1E-06 56.3 5.6 34 46-79 54-88 (642)
314 KOG1800 Ferredoxin/adrenodoxin 94.8 0.032 7E-07 54.9 4.0 35 48-82 21-58 (468)
315 PTZ00318 NADH dehydrogenase-li 94.7 0.032 6.9E-07 58.1 4.3 36 47-82 10-46 (424)
316 COG0493 GltD NADPH-dependent g 94.5 0.04 8.7E-07 57.3 4.4 33 48-80 124-157 (457)
317 KOG4405 GDP dissociation inhib 93.9 0.073 1.6E-06 52.9 4.4 40 44-83 5-45 (547)
318 TIGR03169 Nterm_to_SelD pyridi 93.8 0.059 1.3E-06 54.8 3.9 34 49-82 1-38 (364)
319 COG1206 Gid NAD(FAD)-utilizing 93.8 0.073 1.6E-06 51.5 4.1 32 49-80 5-37 (439)
320 PRK04965 NADH:flavorubredoxin 93.7 0.058 1.3E-06 55.2 3.7 62 218-294 189-250 (377)
321 PF13434 K_oxygenase: L-lysine 93.4 0.49 1.1E-05 47.6 9.7 36 45-80 188-226 (341)
322 KOG0399 Glutamate synthase [Am 93.3 0.063 1.4E-06 59.7 3.2 46 34-80 1773-1819(2142)
323 PRK11749 dihydropyrimidine deh 93.1 0.4 8.7E-06 50.5 8.9 32 48-79 274-307 (457)
324 COG4716 Myosin-crossreactive a 92.8 0.28 6.1E-06 48.4 6.4 59 218-282 233-291 (587)
325 COG5044 MRS6 RAB proteins gera 92.8 0.13 2.8E-06 50.5 4.2 38 47-84 6-44 (434)
326 KOG0404 Thioredoxin reductase 92.6 0.094 2E-06 47.9 2.7 33 47-79 8-41 (322)
327 COG0446 HcaD Uncharacterized N 92.5 0.097 2.1E-06 54.0 3.3 35 47-81 136-171 (415)
328 COG1252 Ndh NADH dehydrogenase 92.3 0.13 2.8E-06 52.3 3.7 37 49-85 5-44 (405)
329 PRK12778 putative bifunctional 92.3 0.53 1.2E-05 52.9 8.9 31 49-79 572-604 (752)
330 PF02558 ApbA: Ketopantoate re 91.6 0.16 3.5E-06 44.4 3.1 30 50-79 1-31 (151)
331 COG0569 TrkA K+ transport syst 90.1 0.26 5.7E-06 46.3 3.1 32 49-80 2-34 (225)
332 PF01210 NAD_Gly3P_dh_N: NAD-d 90.0 0.25 5.3E-06 43.6 2.7 30 50-79 2-32 (157)
333 PF02737 3HCDH_N: 3-hydroxyacy 89.9 0.24 5.3E-06 44.8 2.7 31 50-80 2-33 (180)
334 PRK07251 pyridine nucleotide-d 89.6 0.28 6E-06 51.3 3.3 32 49-80 159-191 (438)
335 KOG2755 Oxidoreductase [Genera 89.6 0.26 5.6E-06 46.3 2.6 31 50-80 2-35 (334)
336 PF13738 Pyr_redox_3: Pyridine 89.4 0.33 7.1E-06 44.6 3.2 33 48-80 168-201 (203)
337 PRK07846 mycothione reductase; 89.2 0.32 6.9E-06 51.1 3.4 33 48-80 167-200 (451)
338 PRK06467 dihydrolipoamide dehy 89.0 0.32 7E-06 51.4 3.3 32 49-80 176-208 (471)
339 PRK06912 acoL dihydrolipoamide 89.0 0.35 7.6E-06 50.9 3.5 32 49-80 172-204 (458)
340 TIGR02053 MerA mercuric reduct 89.0 0.33 7.1E-06 51.2 3.3 33 48-80 167-200 (463)
341 PRK05708 2-dehydropantoate 2-r 88.8 0.33 7.1E-06 48.1 3.0 31 49-79 4-35 (305)
342 TIGR01421 gluta_reduc_1 glutat 88.8 0.33 7.2E-06 50.9 3.1 32 49-80 168-200 (450)
343 KOG1336 Monodehydroascorbate/f 88.7 2.1 4.6E-05 43.9 8.5 56 222-290 265-320 (478)
344 PF01593 Amino_oxidase: Flavin 88.5 0.31 6.6E-06 50.4 2.7 26 57-82 1-27 (450)
345 PRK06370 mercuric reductase; V 88.2 0.41 8.8E-06 50.5 3.4 33 48-80 172-205 (463)
346 PF10518 TAT_signal: TAT (twin 88.2 0.38 8.3E-06 28.0 1.7 16 1-16 2-18 (26)
347 PRK01438 murD UDP-N-acetylmura 88.1 0.42 9.2E-06 50.6 3.4 31 49-79 18-49 (480)
348 PF03721 UDPG_MGDP_dh_N: UDP-g 88.0 0.5 1.1E-05 42.9 3.4 31 50-80 3-34 (185)
349 PRK06115 dihydrolipoamide dehy 87.9 0.45 9.7E-06 50.2 3.5 33 48-80 175-208 (466)
350 PRK14989 nitrite reductase sub 87.6 0.54 1.2E-05 53.2 4.0 33 49-81 5-42 (847)
351 PRK06416 dihydrolipoamide dehy 87.6 0.47 1E-05 50.0 3.4 32 49-80 174-206 (462)
352 PRK02705 murD UDP-N-acetylmura 87.5 0.49 1.1E-05 49.8 3.5 31 50-80 3-34 (459)
353 TIGR03385 CoA_CoA_reduc CoA-di 87.4 0.48 1E-05 49.4 3.3 32 49-80 139-171 (427)
354 PRK13512 coenzyme A disulfide 87.3 0.48 1.1E-05 49.5 3.3 32 49-80 150-182 (438)
355 PRK05249 soluble pyridine nucl 87.0 0.52 1.1E-05 49.7 3.3 32 49-80 177-209 (461)
356 PRK06249 2-dehydropantoate 2-r 86.9 0.55 1.2E-05 46.7 3.3 31 49-79 7-38 (313)
357 TIGR03452 mycothione_red mycot 86.9 0.53 1.2E-05 49.4 3.3 33 48-80 170-203 (452)
358 PRK06292 dihydrolipoamide dehy 86.9 0.53 1.1E-05 49.6 3.3 32 49-80 171-203 (460)
359 PF02254 TrkA_N: TrkA-N domain 86.5 0.56 1.2E-05 38.7 2.6 31 50-80 1-32 (116)
360 PF13241 NAD_binding_7: Putati 86.4 0.48 1E-05 38.4 2.1 31 48-78 8-39 (103)
361 TIGR01424 gluta_reduc_2 glutat 85.9 0.64 1.4E-05 48.7 3.3 32 49-80 168-200 (446)
362 COG1252 Ndh NADH dehydrogenase 85.8 0.56 1.2E-05 47.8 2.6 34 47-80 155-202 (405)
363 PTZ00153 lipoamide dehydrogena 85.6 0.71 1.5E-05 50.6 3.5 32 49-80 314-346 (659)
364 PRK06129 3-hydroxyacyl-CoA deh 85.6 0.62 1.3E-05 46.2 2.9 31 49-79 4-35 (308)
365 PRK04148 hypothetical protein; 85.4 0.75 1.6E-05 39.1 2.8 31 49-80 19-50 (134)
366 PRK14106 murD UDP-N-acetylmura 85.2 0.75 1.6E-05 48.3 3.4 32 48-79 6-38 (450)
367 TIGR03143 AhpF_homolog putativ 85.2 0.71 1.5E-05 49.9 3.3 32 49-80 145-177 (555)
368 PRK06522 2-dehydropantoate 2-r 85.2 0.75 1.6E-05 45.4 3.2 29 50-78 3-32 (304)
369 PTZ00058 glutathione reductase 85.1 0.7 1.5E-05 49.8 3.2 33 48-80 238-271 (561)
370 PRK12921 2-dehydropantoate 2-r 85.1 0.72 1.6E-05 45.5 3.1 28 50-77 3-31 (305)
371 PRK06718 precorrin-2 dehydroge 85.1 0.86 1.9E-05 42.0 3.3 30 49-78 12-42 (202)
372 PLN02507 glutathione reductase 84.8 0.73 1.6E-05 49.0 3.1 32 49-80 205-237 (499)
373 PRK07845 flavoprotein disulfid 84.8 0.83 1.8E-05 48.2 3.5 32 49-80 179-211 (466)
374 PRK06116 glutathione reductase 84.7 0.8 1.7E-05 48.1 3.3 33 48-80 168-201 (450)
375 TIGR02732 zeta_caro_desat caro 84.5 2.2 4.8E-05 45.1 6.5 34 49-82 1-35 (474)
376 TIGR01470 cysG_Nterm siroheme 84.1 1 2.2E-05 41.7 3.3 30 49-78 11-41 (205)
377 PLN02546 glutathione reductase 83.9 0.88 1.9E-05 49.0 3.2 32 49-80 254-286 (558)
378 PF01488 Shikimate_DH: Shikima 83.9 0.91 2E-05 38.9 2.8 33 47-79 12-46 (135)
379 COG0686 Ald Alanine dehydrogen 83.8 1 2.3E-05 43.5 3.3 35 46-80 167-202 (371)
380 PRK13748 putative mercuric red 83.8 0.91 2E-05 49.2 3.4 31 49-79 272-303 (561)
381 PRK06719 precorrin-2 dehydroge 83.6 1.1 2.4E-05 39.5 3.2 28 49-76 15-43 (157)
382 KOG3923 D-aspartate oxidase [A 83.4 1.1 2.4E-05 43.0 3.2 33 47-79 3-43 (342)
383 PF00899 ThiF: ThiF family; I 83.0 1.2 2.7E-05 38.0 3.2 33 48-80 3-37 (135)
384 PRK07066 3-hydroxybutyryl-CoA 83.0 1.1 2.4E-05 44.5 3.2 30 50-79 10-40 (321)
385 PRK09260 3-hydroxybutyryl-CoA 82.9 0.93 2E-05 44.4 2.8 31 50-80 4-35 (288)
386 PRK08293 3-hydroxybutyryl-CoA 82.7 1.1 2.3E-05 44.0 3.1 31 49-79 5-36 (287)
387 PRK14694 putative mercuric red 82.7 1.1 2.4E-05 47.3 3.4 31 49-79 180-211 (468)
388 PRK07819 3-hydroxybutyryl-CoA 82.6 1.1 2.3E-05 43.9 3.0 32 49-80 7-39 (286)
389 TIGR00518 alaDH alanine dehydr 82.5 1.1 2.4E-05 45.6 3.2 33 47-79 167-200 (370)
390 cd00401 AdoHcyase S-adenosyl-L 82.4 1.2 2.5E-05 45.9 3.3 32 49-80 204-236 (413)
391 TIGR01316 gltA glutamate synth 82.4 1.1 2.4E-05 47.0 3.3 32 49-80 274-306 (449)
392 PF01262 AlaDh_PNT_C: Alanine 82.2 1.2 2.6E-05 39.7 2.9 32 48-79 21-53 (168)
393 TIGR02354 thiF_fam2 thiamine b 81.8 1.4 3.1E-05 40.5 3.3 34 47-80 21-56 (200)
394 PRK12770 putative glutamate sy 81.5 1.2 2.6E-05 45.1 3.0 32 49-80 174-207 (352)
395 PF00670 AdoHcyase_NAD: S-aden 81.5 1.2 2.5E-05 39.2 2.5 32 49-80 25-57 (162)
396 COG3634 AhpF Alkyl hydroperoxi 81.3 1.2 2.6E-05 43.7 2.7 33 48-80 355-388 (520)
397 PRK15116 sulfur acceptor prote 80.8 1.6 3.4E-05 42.1 3.4 34 47-80 30-65 (268)
398 TIGR01438 TGR thioredoxin and 80.7 1.2 2.7E-05 47.1 2.9 30 49-78 182-212 (484)
399 PRK08229 2-dehydropantoate 2-r 80.7 1.4 3E-05 44.3 3.2 31 49-79 4-35 (341)
400 PTZ00052 thioredoxin reductase 80.6 1.3 2.8E-05 47.1 3.1 30 49-78 184-214 (499)
401 cd01075 NAD_bind_Leu_Phe_Val_D 80.4 1.7 3.6E-05 40.1 3.3 31 49-79 30-61 (200)
402 PRK06035 3-hydroxyacyl-CoA deh 80.3 1.4 3.1E-05 43.2 3.0 31 50-80 6-37 (291)
403 COG2072 TrkA Predicted flavopr 79.6 1.9 4.2E-05 45.0 3.9 34 48-81 176-210 (443)
404 cd01080 NAD_bind_m-THF_DH_Cycl 79.5 2.2 4.8E-05 38.0 3.7 32 47-78 44-77 (168)
405 PRK12475 thiamine/molybdopteri 79.4 1.7 3.7E-05 43.5 3.3 35 47-81 24-60 (338)
406 PLN02172 flavin-containing mon 79.4 1.8 3.8E-05 45.6 3.5 31 49-79 206-237 (461)
407 TIGR01423 trypano_reduc trypan 79.3 1.8 3.8E-05 46.0 3.5 32 49-80 189-224 (486)
408 COG1748 LYS9 Saccharopine dehy 79.3 1.8 4E-05 43.8 3.4 31 49-79 3-35 (389)
409 TIGR00936 ahcY adenosylhomocys 79.0 1.8 4E-05 44.3 3.4 33 48-80 196-229 (406)
410 PRK12549 shikimate 5-dehydroge 78.8 1.9 4.2E-05 42.1 3.3 32 48-79 128-161 (284)
411 cd01483 E1_enzyme_family Super 78.7 2 4.4E-05 37.0 3.2 31 50-80 2-34 (143)
412 PRK07688 thiamine/molybdopteri 78.5 2.1 4.6E-05 43.0 3.6 34 47-80 24-59 (339)
413 cd01487 E1_ThiF_like E1_ThiF_l 78.3 2.2 4.7E-05 38.3 3.3 31 50-80 2-34 (174)
414 COG1004 Ugd Predicted UDP-gluc 78.0 2.1 4.5E-05 43.1 3.2 30 50-79 3-33 (414)
415 PRK05808 3-hydroxybutyryl-CoA 78.0 1.7 3.6E-05 42.5 2.7 32 49-80 5-37 (282)
416 COG1893 ApbA Ketopantoate redu 78.0 1.8 3.9E-05 42.8 2.9 31 50-80 3-34 (307)
417 PRK14620 NAD(P)H-dependent gly 78.0 1.9 4.1E-05 43.1 3.1 30 50-79 3-33 (326)
418 PLN02612 phytoene desaturase 77.3 4 8.6E-05 44.2 5.6 51 218-281 314-364 (567)
419 PRK07530 3-hydroxybutyryl-CoA 77.3 2.5 5.3E-05 41.5 3.6 31 49-79 6-37 (292)
420 cd05311 NAD_bind_2_malic_enz N 77.3 1.9 4.2E-05 40.5 2.7 31 49-79 27-61 (226)
421 TIGR02355 moeB molybdopterin s 77.0 3.1 6.8E-05 39.5 4.1 35 47-81 24-60 (240)
422 TIGR01763 MalateDH_bact malate 76.5 2.4 5.2E-05 41.9 3.3 29 50-78 4-34 (305)
423 PRK02472 murD UDP-N-acetylmura 76.4 2.2 4.8E-05 44.7 3.2 30 50-79 8-38 (447)
424 PRK14618 NAD(P)H-dependent gly 76.4 2.3 5.1E-05 42.5 3.3 31 49-79 6-37 (328)
425 COG0281 SfcA Malic enzyme [Ene 76.4 3.3 7.2E-05 41.9 4.2 34 47-80 199-236 (432)
426 PRK12548 shikimate 5-dehydroge 76.4 2.2 4.8E-05 41.8 3.0 31 49-79 128-160 (289)
427 PRK05476 S-adenosyl-L-homocyst 76.2 2.5 5.5E-05 43.6 3.5 32 49-80 214-246 (425)
428 PF13478 XdhC_C: XdhC Rossmann 76.0 2.6 5.5E-05 36.1 2.9 31 50-80 1-32 (136)
429 PRK08328 hypothetical protein; 75.9 2.5 5.4E-05 39.9 3.2 34 47-80 27-62 (231)
430 PLN02494 adenosylhomocysteinas 75.9 2.7 5.8E-05 43.7 3.5 33 48-80 255-288 (477)
431 PRK07233 hypothetical protein; 75.6 4.8 0.0001 41.7 5.6 66 208-288 194-259 (434)
432 TIGR02853 spore_dpaA dipicolin 75.6 2.4 5.3E-05 41.4 3.0 32 48-79 152-184 (287)
433 PTZ00318 NADH dehydrogenase-li 75.1 2.7 5.9E-05 43.7 3.4 32 49-80 175-221 (424)
434 PLN02545 3-hydroxybutyryl-CoA 74.9 2.6 5.6E-05 41.4 3.1 30 50-79 7-37 (295)
435 PRK06130 3-hydroxybutyryl-CoA 74.7 3.1 6.8E-05 41.2 3.6 31 49-79 6-37 (311)
436 PRK05690 molybdopterin biosynt 74.6 3 6.4E-05 39.8 3.3 34 47-80 32-67 (245)
437 TIGR02356 adenyl_thiF thiazole 74.6 3.4 7.5E-05 38.0 3.6 34 47-80 21-56 (202)
438 TIGR03026 NDP-sugDHase nucleot 74.4 2.9 6.3E-05 43.3 3.5 31 50-80 3-34 (411)
439 TIGR03736 PRTRC_ThiF PRTRC sys 74.3 3.3 7.2E-05 39.2 3.5 35 46-80 10-56 (244)
440 PRK09424 pntA NAD(P) transhydr 74.2 2.5 5.5E-05 44.7 2.9 34 47-80 165-199 (509)
441 cd01486 Apg7 Apg7 is an E1-lik 74.1 3.6 7.8E-05 40.1 3.7 33 50-82 2-36 (307)
442 cd00757 ThiF_MoeB_HesA_family 74.1 3 6.5E-05 39.3 3.2 34 47-80 21-56 (228)
443 TIGR01381 E1_like_apg7 E1-like 73.9 3.2 6.8E-05 44.8 3.5 37 47-83 338-376 (664)
444 PRK00094 gpsA NAD(P)H-dependen 73.9 2.7 5.8E-05 41.9 3.0 31 49-79 3-34 (325)
445 PRK11064 wecC UDP-N-acetyl-D-m 73.8 2.9 6.3E-05 43.3 3.3 31 50-80 6-37 (415)
446 PRK08644 thiamine biosynthesis 73.5 3.5 7.6E-05 38.3 3.4 34 47-80 28-63 (212)
447 KOG2304 3-hydroxyacyl-CoA dehy 73.4 4 8.6E-05 37.7 3.5 34 47-80 11-45 (298)
448 cd05292 LDH_2 A subgroup of L- 73.4 3.3 7.2E-05 41.0 3.4 31 49-79 2-35 (308)
449 COG1250 FadB 3-hydroxyacyl-CoA 73.1 3.4 7.3E-05 40.6 3.3 30 50-79 6-36 (307)
450 PRK08223 hypothetical protein; 72.5 3.4 7.5E-05 40.1 3.2 35 47-81 27-63 (287)
451 cd01484 E1-2_like Ubiquitin ac 72.4 3.3 7.2E-05 39.1 3.0 31 50-80 2-34 (234)
452 PRK10669 putative cation:proto 72.4 3.6 7.8E-05 44.5 3.7 34 47-80 417-451 (558)
453 PLN02520 bifunctional 3-dehydr 72.3 3.3 7.2E-05 44.3 3.3 30 49-78 381-411 (529)
454 TIGR01915 npdG NADPH-dependent 71.6 3.8 8.2E-05 38.3 3.2 30 50-79 3-34 (219)
455 TIGR02279 PaaC-3OHAcCoADH 3-hy 71.4 3.2 7E-05 44.1 2.9 32 49-80 7-39 (503)
456 PRK08306 dipicolinate synthase 71.3 3.7 8E-05 40.4 3.2 32 48-79 153-185 (296)
457 cd01485 E1-1_like Ubiquitin ac 71.1 4 8.6E-05 37.5 3.2 34 47-80 19-54 (198)
458 PRK11730 fadB multifunctional 70.8 3.7 8.1E-05 45.7 3.4 32 49-80 315-347 (715)
459 PTZ00075 Adenosylhomocysteinas 70.8 4 8.7E-05 42.5 3.4 32 49-80 256-288 (476)
460 cd05291 HicDH_like L-2-hydroxy 70.6 4.3 9.4E-05 40.1 3.5 31 50-80 3-36 (306)
461 cd01488 Uba3_RUB Ubiquitin act 70.5 4.1 8.9E-05 39.8 3.2 31 50-80 2-34 (291)
462 PLN02353 probable UDP-glucose 70.3 3.9 8.5E-05 43.0 3.3 30 50-79 4-36 (473)
463 TIGR02437 FadB fatty oxidation 70.1 3.9 8.5E-05 45.5 3.4 32 49-80 315-347 (714)
464 cd05191 NAD_bind_amino_acid_DH 69.9 5.4 0.00012 30.9 3.2 30 48-77 24-55 (86)
465 PRK14619 NAD(P)H-dependent gly 69.9 5 0.00011 39.7 3.8 31 49-79 6-37 (308)
466 TIGR00507 aroE shikimate 5-deh 69.7 4.4 9.5E-05 39.3 3.3 32 48-79 118-150 (270)
467 PRK05562 precorrin-2 dehydroge 69.7 4.5 9.9E-05 37.7 3.2 29 48-76 26-55 (223)
468 cd01492 Aos1_SUMO Ubiquitin ac 69.7 4.5 9.6E-05 37.1 3.1 34 47-80 21-56 (197)
469 PRK09496 trkA potassium transp 69.3 3.7 8E-05 43.1 2.9 32 49-80 2-34 (453)
470 PRK14027 quinate/shikimate deh 69.1 4.7 0.0001 39.3 3.3 32 48-79 128-161 (283)
471 cd01489 Uba2_SUMO Ubiquitin ac 69.1 4.3 9.4E-05 40.0 3.1 31 50-80 2-34 (312)
472 cd01078 NAD_bind_H4MPT_DH NADP 69.0 5.2 0.00011 36.5 3.5 32 48-79 29-62 (194)
473 KOG1346 Programmed cell death 68.7 28 0.0006 35.4 8.4 38 43-80 174-214 (659)
474 PRK08017 oxidoreductase; Provi 68.6 4.8 0.0001 38.2 3.3 30 50-79 5-36 (256)
475 PRK06153 hypothetical protein; 68.5 5.5 0.00012 40.3 3.7 34 47-80 176-211 (393)
476 PRK08268 3-hydroxy-acyl-CoA de 68.5 4.2 9.1E-05 43.3 3.1 31 50-80 10-41 (507)
477 cd00755 YgdL_like Family of ac 68.4 4.8 0.0001 37.9 3.2 34 47-80 11-46 (231)
478 PRK12550 shikimate 5-dehydroge 68.4 4.6 9.9E-05 39.2 3.0 31 49-79 124-156 (272)
479 PRK00258 aroE shikimate 5-dehy 68.2 4.6 0.0001 39.3 3.1 32 48-79 124-157 (278)
480 KOG2495 NADH-dehydrogenase (ub 68.0 2.9 6.2E-05 42.4 1.6 30 50-79 221-265 (491)
481 TIGR00561 pntA NAD(P) transhyd 67.9 4.3 9.4E-05 42.8 3.0 32 48-79 165-197 (511)
482 TIGR01809 Shik-DH-AROM shikima 67.7 4.9 0.00011 39.2 3.2 32 48-79 126-159 (282)
483 PRK04308 murD UDP-N-acetylmura 67.6 5.1 0.00011 42.0 3.5 32 49-80 7-39 (445)
484 cd01490 Ube1_repeat2 Ubiquitin 67.6 4.9 0.00011 41.6 3.2 32 50-81 2-40 (435)
485 cd01339 LDH-like_MDH L-lactate 67.4 4.8 0.0001 39.7 3.0 30 50-79 1-32 (300)
486 PRK12810 gltD glutamate syntha 67.3 12 0.00027 39.4 6.4 62 221-292 338-410 (471)
487 TIGR02441 fa_ox_alpha_mit fatt 67.1 4.6 9.9E-05 45.2 3.1 32 49-80 337-369 (737)
488 PRK07417 arogenate dehydrogena 67.1 4.6 0.0001 39.3 2.9 30 50-79 3-33 (279)
489 PF03807 F420_oxidored: NADP o 67.1 4.7 0.0001 31.8 2.4 31 50-80 2-37 (96)
490 PRK01710 murD UDP-N-acetylmura 66.9 5.4 0.00012 42.0 3.5 32 49-80 16-48 (458)
491 COG1063 Tdh Threonine dehydrog 66.7 5.1 0.00011 40.4 3.2 32 49-80 171-204 (350)
492 PRK07531 bifunctional 3-hydrox 66.5 5 0.00011 42.6 3.2 31 49-79 6-37 (495)
493 KOG2018 Predicted dinucleotide 66.2 6.1 0.00013 38.2 3.3 30 50-79 77-108 (430)
494 PRK08762 molybdopterin biosynt 66.0 5.7 0.00012 40.5 3.4 34 47-80 135-170 (376)
495 PRK06223 malate dehydrogenase; 65.7 5.9 0.00013 39.1 3.4 31 49-79 4-36 (307)
496 PRK06505 enoyl-(acyl carrier p 65.5 6.9 0.00015 37.8 3.7 30 49-78 9-42 (271)
497 COG2085 Predicted dinucleotide 65.4 6 0.00013 36.3 3.0 29 50-78 4-33 (211)
498 PF02826 2-Hacid_dh_C: D-isome 65.3 5.8 0.00013 35.7 2.9 34 47-80 36-70 (178)
499 PRK05597 molybdopterin biosynt 65.2 5.6 0.00012 40.2 3.1 34 47-80 28-63 (355)
500 COG3486 IucD Lysine/ornithine 64.8 16 0.00034 37.1 5.9 50 223-282 289-339 (436)
No 1
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.4e-80 Score=657.39 Aligned_cols=514 Identities=61% Similarity=1.032 Sum_probs=400.8
Q ss_pred ccccccCCCCccccccccCCC----------CCCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhh
Q 009241 24 CACQKAAPNYSFMRNATAAKP----------VSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSF 93 (539)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~----------~~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~ 93 (539)
|...-.+..++|+.+++..+. ..+|||||||+|.+||++|.+|+++.+|||||+|+.+...+.......+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~ 101 (587)
T PLN02785 22 GKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENF 101 (587)
T ss_pred ccccCCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhh
Confidence 333344566788888877766 5679999999999999999999998899999999864333433333334
Q ss_pred HhhhcCCCCCCCCccccCCCceeecCcccccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCchhH
Q 009241 94 SAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQ 173 (539)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (539)
.....+|.+.+.+|....++.+.+.+||+|||+|++|+|.|.|+.+++++..||+|+.+.++|++.|+.+...+...++.
T Consensus 102 ~~~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~ 181 (587)
T PLN02785 102 HIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQ 181 (587)
T ss_pred CCcccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHH
Confidence 33445778888888888888899999999999999999999999999998889999999999999998765556677889
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEE
Q 009241 174 SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGV 253 (539)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV 253 (539)
..+.+++.++|+.+.++...+...+...+.++++..|.|+++..+++.+.+.|++|++++.|++|++++++ ..++++||
T Consensus 182 ~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV 260 (587)
T PLN02785 182 AALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGV 260 (587)
T ss_pred HHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEE
Confidence 99999999999987776655655555666666667789998888777777899999999999999998642 12389999
Q ss_pred EEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCcc
Q 009241 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV 333 (539)
Q Consensus 254 ~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~ 333 (539)
++.+.+|..+++.+...++++||||||+|+||+|||+|||||+++|+++||+++.|+|.||+||+||++..+.+..+.+.
T Consensus 261 ~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~ 340 (587)
T PLN02785 261 IFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPV 340 (587)
T ss_pred EEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCc
Confidence 99876776554432212468999999999999999999999999999999999999999999999999998887765543
Q ss_pred chhhHHhhhccccchhhhccCCC----------------CCC------CCCC---------------CCCCCcceEEEEe
Q 009241 334 EVSLIQVVGITQFGSYIEGASGV----------------NFA------GGSP---------------SPRPYRGGFIFEK 376 (539)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~g~----------------~~~------~~~~---------------~~~~~~~~~~~~~ 376 (539)
.....+..+....+.|.+...+. ... +... ....+....++..
T Consensus 341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (587)
T PLN02785 341 EQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEK 420 (587)
T ss_pred hhhhHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEE
Confidence 32222222222222221111000 000 0000 0001111345567
Q ss_pred ecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccch-hHHhhhhccCCCCCCCC
Q 009241 377 IIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMS-VETLLNMTASMPLNLLP 455 (539)
Q Consensus 377 ~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 455 (539)
+..|.|||+|+|.++||.+.|.|+++|+.++.|++.+.++++.+++++++..++++...+.. ..+++......+.+..|
T Consensus 421 l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 500 (587)
T PLN02785 421 IAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIP 500 (587)
T ss_pred ecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCC
Confidence 78999999999999999999999999999999999999999999999998887766432211 11122211111222344
Q ss_pred CCCCCHHHHHHHHHhccCCCcccccccccccccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhh
Q 009241 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535 (539)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~ 535 (539)
...++++++++|++....+.||++|||+||+|||+++||||++||||||+||||..|++||++|+||+|+|+|++|++++
T Consensus 501 ~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~ 580 (587)
T PLN02785 501 KHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER 580 (587)
T ss_pred CCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhc
Q 009241 536 LAS 538 (539)
Q Consensus 536 ~~~ 538 (539)
+++
T Consensus 581 ~~~ 583 (587)
T PLN02785 581 LGR 583 (587)
T ss_pred hhh
Confidence 875
No 2
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=100.00 E-value=4.8e-78 Score=611.83 Aligned_cols=479 Identities=42% Similarity=0.600 Sum_probs=365.6
Q ss_pred cccccccCCCCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcccchhhHh----hhcCCCCCCCCcc
Q 009241 35 FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSA----ELADLSPTSPSQR 108 (539)
Q Consensus 35 ~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 108 (539)
++.+....+...+||+||||||.|||++|.+|+| ..+|||||+|+.+ +...+++.+.. ...+|.|.+.++.
T Consensus 45 ~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~ 121 (623)
T KOG1238|consen 45 RPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQ 121 (623)
T ss_pred ccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccCh
Confidence 4455555556778999999999999999999999 6999999999976 23333333333 3347888877775
Q ss_pred c----cCCCceeecCcccccchhhhccceeecCChhhHh----c--CCCCHHHHhhhhhhhhcccccCCCCch-------
Q 009241 109 F----ISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAR----E--AGWDGRLVNESYQWVEKKVVFRPPMQR------- 171 (539)
Q Consensus 109 ~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~----~--~gw~~~~~~~~~~~~~~~~~~~~~~~~------- 171 (539)
. ..++...++|||++||+|.+|+|+|.|++..||+ . .||+++++.+||++.|+.....+...+
T Consensus 122 ~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~ 201 (623)
T KOG1238|consen 122 HACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGP 201 (623)
T ss_pred hhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCc
Confidence 5 7888899999999999999999999999954443 3 569999999999999987655444332
Q ss_pred -----------hHHHHHHHHHHcCCCCCCCCccCCCCceeeeeee---ecCCCcccchhh-hhh--hcCCCCcEEEcCcE
Q 009241 172 -----------WQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTI---IDQNSQRHTAAD-LLE--YANPSGLTVLLHAS 234 (539)
Q Consensus 172 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~g~r~~~~~-~l~--~~~~~gv~i~~~t~ 234 (539)
....+.++..+.|... .|.++..+.+..+ ...+|.|.+... ++. ...++|+.+..++.
T Consensus 202 ~~ve~~~~~~~~~~~~~~ag~e~G~~~-----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~ 276 (623)
T KOG1238|consen 202 LLVEAGVYPNNLFTAFHRAGTEIGGSI-----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAA 276 (623)
T ss_pred ceeccccccCchhhHhHHhHHhcCCCc-----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccce
Confidence 3455666666676331 1222222222222 235777777654 655 33367999999999
Q ss_pred EEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccC
Q 009241 235 VHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVG 314 (539)
Q Consensus 235 V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG 314 (539)
|++|.+|..+ .++.||++....|+.++++ +.|+||||||+|+||+|||+|||||+++|++.||+++.++|.||
T Consensus 277 vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG 349 (623)
T KOG1238|consen 277 VTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVG 349 (623)
T ss_pred EEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccc
Confidence 9999999664 4999999987437888877 78999999999999999999999999999999999999999999
Q ss_pred ccCccCCCCeEEeeCCCccchhhHHhhhccccchhhhccCCCCCC-----------------CCCC------------C-
Q 009241 315 QGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA-----------------GGSP------------S- 364 (539)
Q Consensus 315 ~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~------------~- 364 (539)
+||+||++..++...+.+......+..++.....|+...+|+... .+++ .
T Consensus 350 ~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~ 429 (623)
T KOG1238|consen 350 QNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSD 429 (623)
T ss_pred cccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEecccccccc
Confidence 999999999887776655433332222222222222221111100 0000 0
Q ss_pred --------C-----------CCCcceEEEEeecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHc
Q 009241 365 --------P-----------RPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIE 425 (539)
Q Consensus 365 --------~-----------~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~ 425 (539)
. .......|+..+.+|.|+|+|.|+++||.+.|+|+++|+.+|+|++.+.++++.+.++.+
T Consensus 430 ~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~ 509 (623)
T KOG1238|consen 430 GLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSN 509 (623)
T ss_pred chhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHc
Confidence 0 001125567788999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc------cccCCCCcEeccCC
Q 009241 426 SKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDA 499 (539)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg------~VvD~~~rv~g~~n 499 (539)
+..|+++...... .+.|.+.. ....+++++++|+|.+..+.||++|||+|| .|||+++||||++|
T Consensus 510 s~af~~~~~r~~~--------~~~~~c~~-~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~ 580 (623)
T KOG1238|consen 510 SKAFQRFGARLWK--------KPVPGCDL-LAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRG 580 (623)
T ss_pred CHHHHHhcchhcc--------ccCCCccc-ccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccC
Confidence 9988887755421 11122111 125689999999999999999999999999 89999999999999
Q ss_pred ceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 009241 500 LRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA 537 (539)
Q Consensus 500 L~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~~~ 537 (539)
|||+|||+||.+|++||+.|+||+|+|+||.|+++...
T Consensus 581 LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~ 618 (623)
T KOG1238|consen 581 LRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA 618 (623)
T ss_pred ceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999977776554
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=1.8e-69 Score=578.47 Aligned_cols=465 Identities=28% Similarity=0.405 Sum_probs=342.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC-CCCCcccchhhHhh----hcCCCCCCCCccccCCCcee
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY-GNPNITNSGSFSAE----LADLSPTSPSQRFISEDGVV 116 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 116 (539)
++.+|||||||||++|+++|.+|++ |.+|||||+|+... .......+..+... ..+|.|.+.++....++.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 81 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME 81 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence 4567999999999999999999999 89999999997532 11222222211111 12455666677777777888
Q ss_pred ecCcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc-------------C---CCCchhH
Q 009241 117 STRARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF-------------R---PPMQRWQ 173 (539)
Q Consensus 117 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~ 173 (539)
+.+|++|||+|.+|++.+.|+.+.+|+. .+|+|+++++||+++|+...- . ....+..
T Consensus 82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~ 161 (560)
T PRK02106 82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF 161 (560)
T ss_pred cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence 9999999999999999999999987653 479999999999999976510 0 1224456
Q ss_pred HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 009241 174 SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAH 251 (539)
Q Consensus 174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~ 251 (539)
+.+.++++++|++...........++..... ...+|.|+++.. |++ ..++.|++|++++.|++|+++++ +++
T Consensus 162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~ 235 (560)
T PRK02106 162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV 235 (560)
T ss_pred HHHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence 7788889999987543221111111111111 124677877654 666 44578899999999999999854 999
Q ss_pred EEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCC
Q 009241 252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331 (539)
Q Consensus 252 gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~ 331 (539)
||++.+.++ ...+. ++|+||||||+++||+|||+||||++++|+++||+++.++|.||+||+||+...+.+..+.
T Consensus 236 GV~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~ 310 (560)
T PRK02106 236 GVEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ 310 (560)
T ss_pred EEEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence 999987544 33333 6899999999999999999999999999999999999999999999999999887776544
Q ss_pred ccchh-----h------HHhhhccccc----------hhhhccCCCCC-------CCC-CCC--CCC--CcceEEEEeec
Q 009241 332 PVEVS-----L------IQVVGITQFG----------SYIEGASGVNF-------AGG-SPS--PRP--YRGGFIFEKII 378 (539)
Q Consensus 332 ~~~~~-----~------~~~~~~~~~~----------~~~~~~~g~~~-------~~~-~~~--~~~--~~~~~~~~~~~ 378 (539)
+.... . .++. ....+ .|.....+..+ .+. ... ... .....+...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (560)
T PRK02106 311 PVSLYPALKWWNKPKIGAEWL-FTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPM 389 (560)
T ss_pred CcccccccchhhhhHHHHHHH-hcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeEEEEEEec
Confidence 32110 0 0000 00000 01111000000 000 000 000 11223334567
Q ss_pred CcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCC
Q 009241 379 GPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS 458 (539)
Q Consensus 379 ~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (539)
.|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++++++.+...+.. |+ ...
T Consensus 390 ~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------p~----~~~ 454 (560)
T PRK02106 390 RSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREIS-----------PG----ADV 454 (560)
T ss_pred CCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccC-----------CC----ccc
Confidence 899999999999999999999999999999999999999999999998877654322210 11 123
Q ss_pred CCHHHHHHHHHhccCCCcccccccccc----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241 459 NTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~H~~Gt~~mg----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~ 534 (539)
++++++++|++....+++|++|||||| +|||++|||||++||||+|+||||+.+++||++||||+|+|+||+|+++
T Consensus 455 ~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~ 534 (560)
T PRK02106 455 QTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGR 534 (560)
T ss_pred CCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 578889999999888999999999999 6999999999999999999999999999999999999999999988875
Q ss_pred h
Q 009241 535 R 535 (539)
Q Consensus 535 ~ 535 (539)
.
T Consensus 535 ~ 535 (560)
T PRK02106 535 T 535 (560)
T ss_pred C
Confidence 3
No 4
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=8.4e-69 Score=570.45 Aligned_cols=459 Identities=28% Similarity=0.413 Sum_probs=338.9
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCC-CCCcccchhhHh----hhcCCCCCCCCccccCCCceeecCcc
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYG-NPNITNSGSFSA----ELADLSPTSPSQRFISEDGVVSTRAR 121 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~ 121 (539)
||||||||++|+++|.+|++ + .+|||||+|+.... ......+..+.. ...+|.|.+.++....++.+.+.+|+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 80 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK 80 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence 89999999999999999999 7 69999999985321 122222221111 11245566777777778889999999
Q ss_pred cccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc---------------CCCCchhHHHHHHH
Q 009241 122 VLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF---------------RPPMQRWQSALRDG 179 (539)
Q Consensus 122 ~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~ 179 (539)
+|||+|.+|++.+.|+.+.+|+. .+|+|+++.+||+++|..+.. .+...+..+.+.++
T Consensus 81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a 160 (532)
T TIGR01810 81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA 160 (532)
T ss_pred ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence 99999999999999999976543 379999999999999976541 11224456778888
Q ss_pred HHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhhh-cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe
Q 009241 180 LVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEY-ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257 (539)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~-~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~ 257 (539)
++++|++...........++......+ .+|.|+++.. |++. .++.|++|+++++|++|+++++ +++||++.+
T Consensus 161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~ 234 (532)
T TIGR01810 161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK 234 (532)
T ss_pred HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence 899998754322211111111111111 4677877654 6664 4477999999999999999854 999999986
Q ss_pred CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCccchh-
Q 009241 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS- 336 (539)
Q Consensus 258 ~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~~~~- 336 (539)
. +....+. ++|+||||||+++||+||++||||++++|+++||+++.++|.||+|||||+...+.+..+.+....
T Consensus 235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP 309 (532)
T ss_pred C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence 3 3333333 689999999999999999999999999999999999999999999999999988877655432110
Q ss_pred hH----------Hhh----hc---cc--cchhhhccCCCCCCCCC-----------CCCCC--CcceEEEEeecCcCcce
Q 009241 337 LI----------QVV----GI---TQ--FGSYIEGASGVNFAGGS-----------PSPRP--YRGGFIFEKIIGPVSTG 384 (539)
Q Consensus 337 ~~----------~~~----~~---~~--~~~~~~~~~g~~~~~~~-----------~~~~~--~~~~~~~~~~~~p~s~g 384 (539)
.. ++. +. .. ...|.....+..+ ++. ..... .....+......|.|+|
T Consensus 310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG 388 (532)
T TIGR01810 310 SLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDY-PNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRG 388 (532)
T ss_pred ccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCC-CCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCCCce
Confidence 00 000 00 00 0001111000000 000 00000 01123334567899999
Q ss_pred EEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHH
Q 009241 385 HLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464 (539)
Q Consensus 385 ~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (539)
+|+|+++||++.|.|+++|+.++.|++.+.++++.+++++++.+++.+...+.. |+ ...++++++
T Consensus 389 ~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------p~----~~~~~d~~~ 453 (532)
T TIGR01810 389 HVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEIS-----------PG----PEVQTDEEI 453 (532)
T ss_pred EEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccC-----------CC----CCCCCHHHH
Confidence 999999999999999999999999999999999999999988777665322211 11 234688999
Q ss_pred HHHHHhccCCCcccccccccc------cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241 465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534 (539)
Q Consensus 465 ~~~~~~~~~~~~H~~Gt~~mg------~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~ 534 (539)
++|++....+.+|++|||||| +|||+++||||++||||||+||||+.+++||++|+||+|+|+||.|+++
T Consensus 454 ~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 454 DEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred HHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998 4999999999999999999999999999999999999999999988864
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-62 Score=513.42 Aligned_cols=465 Identities=27% Similarity=0.364 Sum_probs=346.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhc----CCCCCCCCccccCCCceeec
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELA----DLSPTSPSQRFISEDGVVST 118 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 118 (539)
+..+||+||||+|.+|+++|.+|++ |.+|+|||+|+..... ....+..+..... +|.+.+.++.+..++.+.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~ 82 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP 82 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence 4568999999999999999999999 9999999999753221 2333333433332 47778878888889999999
Q ss_pred CcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcccccC--------C-----------CCchh
Q 009241 119 RARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR--------P-----------PMQRW 172 (539)
Q Consensus 119 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~--------~-----------~~~~~ 172 (539)
++++|||+|.+|++.+.|+.+.+|+. .+|+++++.|||+++|+..... . ...+.
T Consensus 83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~ 162 (542)
T COG2303 83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI 162 (542)
T ss_pred ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence 99999999999999999999987743 4599999999999999754431 1 11235
Q ss_pred HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeE
Q 009241 173 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVA 250 (539)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v 250 (539)
.+.+.++.+++|++....+......++...+... .+|.|++... +++ ..++.|++|++++.|++|+++++ |+
T Consensus 163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~ 236 (542)
T COG2303 163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA 236 (542)
T ss_pred HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence 6677777788898755432221111211111222 3777777654 666 57788999999999999999998 99
Q ss_pred EEEEEEeCCCC-eEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeC
Q 009241 251 HGVVFRDATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPS 329 (539)
Q Consensus 251 ~gV~~~~~~g~-~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~ 329 (539)
+||++...++. ..... +++.||||||+|+||+||++||||+...+..+|+.++.++|.||+|||||....+.+..
T Consensus 237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~ 312 (542)
T COG2303 237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA 312 (542)
T ss_pred EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence 99999864432 22333 68999999999999999999999999999999999999999999999999988776655
Q ss_pred CCccchhhHHhhhccccc--hhhhccC----------C-----CCC-CCCCC-----------CCCCCcceEEEEeecCc
Q 009241 330 PVPVEVSLIQVVGITQFG--SYIEGAS----------G-----VNF-AGGSP-----------SPRPYRGGFIFEKIIGP 380 (539)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~--~~~~~~~----------g-----~~~-~~~~~-----------~~~~~~~~~~~~~~~~p 380 (539)
..+..............+ .|..... + ... .++.+ .........+.....+|
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp 392 (542)
T COG2303 313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRP 392 (542)
T ss_pred cCccccccccccccccccceeEEeecCCCcccccccccccccCccccCCCcccccccccccccccccCCccEEeeccCCC
Confidence 443311111000000000 0111000 1 000 00000 01122344555667899
Q ss_pred CcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCC
Q 009241 381 VSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNT 460 (539)
Q Consensus 381 ~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (539)
.++|.|.+++.|+...|.|+++|..++.|+..+..+++..++++....+......+.. |+ ...++
T Consensus 393 ~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~-----------~~----~~~~~ 457 (542)
T COG2303 393 KSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELA-----------PG----PRVTT 457 (542)
T ss_pred ccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhc-----------CC----Ccccc
Confidence 9999999999999999999999999999999999999999999986544444433311 11 23466
Q ss_pred HHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241 461 STSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534 (539)
Q Consensus 461 ~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~ 534 (539)
++++..|++....+.+|++|||||| +|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|+++
T Consensus 458 ~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 458 DEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred HHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 7789999999999999999999999 3555999999999999999999999999999999999999999999873
No 6
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=100.00 E-value=3.5e-49 Score=409.39 Aligned_cols=436 Identities=16% Similarity=0.145 Sum_probs=275.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCC---------cc-cchhhHhhhcC-CCCCCC----------
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPN---------IT-NSGSFSAELAD-LSPTSP---------- 105 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~---------~~-~~~~~~~~~~~-~~~~~~---------- 105 (539)
|||||||+|++|+++|+.|++ |.+|+|||++........ .+ ....|...++. ..+.+.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL 80 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence 799999999999999999999 999999999986542110 00 11122222210 000000
Q ss_pred -C--------ccccC-C-----C---cee-ecCcccccchhhhccceeecCChhhHhc--CCCCH--HHHhhhhhhhhcc
Q 009241 106 -S--------QRFIS-E-----D---GVV-STRARVLGGGTCINAGFYTRAEPYYARE--AGWDG--RLVNESYQWVEKK 162 (539)
Q Consensus 106 -~--------~~~~~-~-----~---~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~--~~~~~~~~~~~~~ 162 (539)
+ ...+. + + .+. ..+-+.+||+|.+|++.+.|..++.... .+|++ +++++||+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~ 160 (544)
T TIGR02462 81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL 160 (544)
T ss_pred CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 0 00000 0 0 111 3456899999999999999998853221 46874 8999999999999
Q ss_pred cccCCCC--chh--HHHHHHHHHHc-CC-CCCCC-CccCCCCceeeeeeeecCCCcccchh-hhhh-----hcCCCCcEE
Q 009241 163 VVFRPPM--QRW--QSALRDGLVEV-GV-LPYNG-FTYDHLYGTKIGGTIIDQNSQRHTAA-DLLE-----YANPSGLTV 229 (539)
Q Consensus 163 ~~~~~~~--~~~--~~~~~~~~~~~-g~-~~~~~-~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~gv~i 229 (539)
+++.+.. .+. ...+....+++ |. ..... ..+.. .+|. .+.+++.. +.++ .+...|++|
T Consensus 161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~PlA~~~-~~c~--------~~ak~s~~~t~~~~~~~~~~~~~n~~l 231 (544)
T TIGR02462 161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPLPLACHR-RTDP--------TYVEWHSADTVFDLQPNDDAPSERFTL 231 (544)
T ss_pred hCCCCCcCCCcccchhHHHHHHHHhccccccccCchhhhc-cCCC--------ccceecCCccchhhhhhhhccCCCEEE
Confidence 8876531 111 11111222222 22 11110 00000 0111 12233221 2222 224678999
Q ss_pred EcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCccee
Q 009241 230 LLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL 308 (539)
Q Consensus 230 ~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~ 308 (539)
++++.|++|+.++++ ..+|++|++.+. +|+.+++. |+.||||||+++||||||+|+++... .+.|+....
T Consensus 232 ~~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss 302 (544)
T TIGR02462 232 LTNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPP 302 (544)
T ss_pred EcCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCC
Confidence 999999999998642 128999999986 56665554 89999999999999999999987433 223333221
Q ss_pred cCcccCccCccCCCCeEEeeCCCccchhhHHhhh-ccc----cchhhhcc-C--------------------CCCCCCCC
Q 009241 309 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVG-ITQ----FGSYIEGA-S--------------------GVNFAGGS 362 (539)
Q Consensus 309 ~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~-~--------------------g~~~~~~~ 362 (539)
.++.||||||||+...+.+.++++....+..... ... ...+.... . +..|....
T Consensus 303 ~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~~~~ 382 (544)
T TIGR02462 303 LLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWHTQI 382 (544)
T ss_pred CCCCCCcchhcCCCccEEEEecchhhhhccCCccccccccccchhhhccccCCcccccccccCcccccccccccccchhh
Confidence 2479999999999887766555432110000000 000 00000000 0 00011000
Q ss_pred CC--------------CCCCcceEEEEeecCcCcceEEEecC--CCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHcc
Q 009241 363 PS--------------PRPYRGGFIFEKIIGPVSTGHLELRT--RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIES 426 (539)
Q Consensus 363 ~~--------------~~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~ 426 (539)
.. ........+.+. .|...++|+|++ +|.+|.|.+++.|..+++|++.++.+.+.+.++++.
T Consensus 383 ~~~~~~~g~~~~~~~~~~~v~l~~~~e~--lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~ 460 (544)
T TIGR02462 383 HRDAFSYGAVGPSIDSRVIVDLRFFGRT--EPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAK 460 (544)
T ss_pred hhhhhhcccccccccccceeeEEEEecc--CCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111223333 477788899965 699999999999999999999999999999999988
Q ss_pred ccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCce
Q 009241 427 KSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALR 501 (539)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~ 501 (539)
++....... + .+ .....+.|++|||||| +|||++|||||++|||
T Consensus 461 ~G~~~~~~~-------------------~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~ 509 (544)
T TIGR02462 461 IGGYLPGSL-------------------P----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLY 509 (544)
T ss_pred cCCCccccc-------------------c----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCeE
Confidence 764311100 0 00 0124578999999999 7999999999999999
Q ss_pred EeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241 502 VVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534 (539)
Q Consensus 502 V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~ 534 (539)
|+|+|+||+.+++||++||||+|+|+|++|+++
T Consensus 510 V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~ 542 (544)
T TIGR02462 510 VGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN 542 (544)
T ss_pred EeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998864
No 7
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=2.9e-41 Score=334.22 Aligned_cols=263 Identities=34% Similarity=0.499 Sum_probs=183.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCCCCCcccchhhHhhh---cCCCCCCCCccccCCCceeecCccc
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYGNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVVSTRARV 122 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (539)
|||||||||++|+++|.+|++ | .+|||||+|+...... ........... .++.+.+.++....++.+.+.+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG 79 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence 899999999999999999999 6 6999999999765433 00001111101 1223444555666777788889999
Q ss_pred ccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcc-------------ccc---CCCCchhHHHHHHH
Q 009241 123 LGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKK-------------VVF---RPPMQRWQSALRDG 179 (539)
Q Consensus 123 lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~ 179 (539)
|||+|.+|++.+.|+.+.+++. .+|.++++.++|+++|.. +.+ .+...+..+.+.++
T Consensus 80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a 159 (296)
T PF00732_consen 80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA 159 (296)
T ss_dssp TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence 9999999999999999876553 358899999999999933 222 22334556888899
Q ss_pred HHHcCCCCCCCC-ccCCCCceeeeeeeecCCCcccchh-hhhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEE
Q 009241 180 LVEVGVLPYNGF-TYDHLYGTKIGGTIIDQNSQRHTAA-DLLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR 256 (539)
Q Consensus 180 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~ 256 (539)
++++|++..... ....+..|..+. ...+|.|+++. .|++ ..++.|++|+++|+|++|+++.++ .+++||++.
T Consensus 160 ~~~~G~~~~~~~~~~~~~g~~~~~~--~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~ 234 (296)
T PF00732_consen 160 AEELGIPVPQDFNGCDPCGFCMTGF--NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV 234 (296)
T ss_dssp HHHTTHHBCSCTTSSTCSEEEECEE--CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred HHHcCCccccccccccccccccccc--cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence 999998722221 121122222221 23678788764 4776 555569999999999999986332 399999999
Q ss_pred eCCCC-eEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCC
Q 009241 257 DATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNP 321 (539)
Q Consensus 257 ~~~g~-~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~ 321 (539)
+.++. ...+. ++|.||||||+++||+||++||||+..+|..+||+++.++| ||+||||||
T Consensus 235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~ 295 (296)
T PF00732_consen 235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP 295 (296)
T ss_dssp ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence 87776 23333 58999999999999999999999999999999999999999 999999997
No 8
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=99.97 E-value=1.4e-31 Score=235.47 Aligned_cols=139 Identities=34% Similarity=0.591 Sum_probs=110.4
Q ss_pred cCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCC
Q 009241 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSN 459 (539)
Q Consensus 380 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (539)
|.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.++++++.. ++++......+.. .+. .......
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-------~~~-~~~~~~~ 71 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGP-------SPF-CPDASLD 71 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCG-------CSC-CGCSTTT
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccc-------ccc-ccccccc
Confidence 789999999999999999999999999999999999999999999988 6555432211000 000 0112456
Q ss_pred CHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHH
Q 009241 460 TSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYM 527 (539)
Q Consensus 460 ~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~ 527 (539)
+++++++|++....+.+|++|||||| +|||++|||||++||||+|+|+||+.+++||++|+||+|+|+
T Consensus 72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 78899999999999999999999999 999999999999999999999999999999999999999996
No 9
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.72 E-value=1.7e-16 Score=167.91 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 122 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (539)
++.++||||||+|.+|++||+++++ |.+|+||||.+.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~------------------------------------------ 95 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV------------------------------------------ 95 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC------------------------------------------
Confidence 4568999999999999999999999 999999999875
Q ss_pred ccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCccCCC
Q 009241 123 LGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFTYDHL 196 (539)
Q Consensus 123 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~ 196 (539)
+||++...++.+.-......+..+.. +..+.+|+...+......+.. .+ .....+++++.|+...... ..
T Consensus 96 ~GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~-~~-- 171 (506)
T PRK06481 96 AGGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-IT-- 171 (506)
T ss_pred CCCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEeecc-cC--
Confidence 45555544444333332222222221 112223332221111111000 00 1234566777776532100 00
Q ss_pred CceeeeeeeecCCCcccc---hhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCC
Q 009241 197 YGTKIGGTIIDQNSQRHT---AADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKN 273 (539)
Q Consensus 197 ~~~~~~~~~~~~~g~r~~---~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~ 273 (539)
.+........+.++.... ...+...+++.|++|+++++|++|+.+++ +|+||.+...+++...+ .++
T Consensus 172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~ 241 (506)
T PRK06481 172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSK 241 (506)
T ss_pred CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecC
Confidence 000000011111221111 12244456678999999999999987654 89999987645544444 379
Q ss_pred eEEEcCCCcccHHHHHh
Q 009241 274 EIIVSAGALGSPQLLML 290 (539)
Q Consensus 274 ~VVlAaG~~~sp~lLl~ 290 (539)
.||||+|+|....-++.
T Consensus 242 ~VVlAtGG~~~n~~m~~ 258 (506)
T PRK06481 242 AVVVTTGGFGANKDMIA 258 (506)
T ss_pred eEEEeCCCcccCHHHHH
Confidence 99999999987654443
No 10
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.64 E-value=3.9e-15 Score=158.52 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=48.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+...+++.|++|+++++|++|+.+++ +|+||.+.+ +|..+.+. ++|.||||+|+|+...-|+.
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence 33456678999999999999997643 999998875 55555554 67899999999998765543
No 11
>PRK07121 hypothetical protein; Validated
Probab=99.63 E-value=6.8e-15 Score=155.69 Aligned_cols=194 Identities=20% Similarity=0.259 Sum_probs=111.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 122 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (539)
++.++||||||+|.+|+++|++|++ |.+|+||||.+.
T Consensus 17 ~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~------------------------------------------ 54 (492)
T PRK07121 17 WDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG------------------------------------------ 54 (492)
T ss_pred cCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC------------------------------------------
Confidence 3568999999999999999999999 999999999875
Q ss_pred ccchhhhccceeecC-ChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCc---
Q 009241 123 LGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFT--- 192 (539)
Q Consensus 123 lGG~s~~~~~~~~r~-~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~--- 192 (539)
+||+|.+.++.++-. ........+.. ++.+.++++..+......... .+ .....+++++.|++......
T Consensus 55 ~gG~s~~sgG~~~~~~g~~~q~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~ 133 (492)
T PRK07121 55 AGGATALSGGVIYLGGGTAVQKAAGFE-DSPENMYAYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEK 133 (492)
T ss_pred CCCcccccCeEEEeCCCcHHHHhcCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCc
Confidence 567777766655432 22222223322 112222222211111111111 01 12344566777765321100
Q ss_pred --cC------CCCc----e---------eeeeeeecCCCc----ccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCC
Q 009241 193 --YD------HLYG----T---------KIGGTIIDQNSQ----RHTAADLLEYANPSGLTVLLHASVHKILFRNKGKAR 247 (539)
Q Consensus 193 --~~------~~~~----~---------~~~~~~~~~~g~----r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~ 247 (539)
++ ...+ . ..+.. ....+. +.....+...+++.|++|+++++|++|+.++++
T Consensus 134 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g--- 209 (492)
T PRK07121 134 TSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHR-VQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG--- 209 (492)
T ss_pred ccCCCCCcccccchhhcchhhhhccCCccccee-cCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC---
Confidence 00 0000 0 00000 000110 011122445667789999999999999987654
Q ss_pred CeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 248 PVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 248 ~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+|+||++.+ +++...+. +++.||||+|++....-|+.
T Consensus 210 -~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~ 246 (492)
T PRK07121 210 -RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVA 246 (492)
T ss_pred -CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHH
Confidence 899999865 45555554 33999999999987666554
No 12
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.61 E-value=9.6e-15 Score=156.51 Aligned_cols=62 Identities=11% Similarity=0.179 Sum_probs=49.1
Q ss_pred hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 220 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 220 ~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
..+++.|++|+++|+|++|+.++++ +|+||.+.. +++.+.+. +++.||||||+|+...-|+.
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~ 282 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRK 282 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHH
Confidence 3567789999999999999998654 999999865 66665555 44689999999998665554
No 13
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.59 E-value=2.5e-14 Score=152.80 Aligned_cols=63 Identities=16% Similarity=0.324 Sum_probs=49.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+...+++.|++|+++++|++|+.+++ +|+||++.. +|+.+.+. +++.||||||+|....-|+.
T Consensus 214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~ 276 (557)
T PRK12844 214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK 276 (557)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence 33456778999999999999998765 999999875 56655555 45789999999998765554
No 14
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.58 E-value=1.5e-14 Score=152.41 Aligned_cols=194 Identities=19% Similarity=0.164 Sum_probs=109.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL 123 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 123 (539)
..++||||||+|++|+++|++|++ |.+|+||||++... .
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~----------------------------------------~ 41 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREW----------------------------------------R 41 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC----------------------------------------C
Confidence 457999999999999999999999 99999999987411 3
Q ss_pred cchhhhccceeecCCh-hhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCccCCC
Q 009241 124 GGGTCINAGFYTRAEP-YYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFTYDHL 196 (539)
Q Consensus 124 GG~s~~~~~~~~r~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~ 196 (539)
||++.+.++....... .......++.++ ++....+......... .+ .....+++++.|+....... ..
T Consensus 42 GG~s~~s~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~--~~ 116 (466)
T PRK08274 42 GGNSRHTRNLRCMHDAPQDVLVGAYPEEE---FWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLS--GA 116 (466)
T ss_pred CcccccCCceeeeCCCchhhccccccHHH---HHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCC--Cc
Confidence 5655555542211111 000001122222 2222222111111100 00 12344566777765321100 00
Q ss_pred CceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEE
Q 009241 197 YGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEII 276 (539)
Q Consensus 197 ~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VV 276 (539)
.........+ ..+.......+...+++.|++++++++|++|+.+++ +|+||.+.+.+++...+. ++.||
T Consensus 117 ~~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VI 185 (466)
T PRK08274 117 LHVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVV 185 (466)
T ss_pred cccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEE
Confidence 0000000011 111111112244566778999999999999998754 899998865456555554 79999
Q ss_pred EcCCCcccHHHHHhcCCC
Q 009241 277 VSAGALGSPQLLMLSGVG 294 (539)
Q Consensus 277 lAaG~~~sp~lLl~SGig 294 (539)
||+|++..++.++..-.+
T Consensus 186 lAtGg~~~n~~~~~~~~~ 203 (466)
T PRK08274 186 LAAGGFESNREWLREAWG 203 (466)
T ss_pred ECCCCCCCCHHHHHhhcC
Confidence 999999998888876444
No 15
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.57 E-value=1.4e-14 Score=150.62 Aligned_cols=183 Identities=25% Similarity=0.305 Sum_probs=98.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccchh
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGT 127 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s 127 (539)
||||||+|.+|++||++|++ |.+|+||||++. +||++
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence 89999999999999999999 999999999985 56766
Q ss_pred hhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---c---hhHHHHHHHHHHcCCCCCC---C-CccCCCC
Q 009241 128 CINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---Q---RWQSALRDGLVEVGVLPYN---G-FTYDHLY 197 (539)
Q Consensus 128 ~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~~~~---~-~~~~~~~ 197 (539)
...++.+.-.........+-. +..+.++....+......+. . .......+++++.|+.... + +......
T Consensus 39 ~~s~g~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g 117 (417)
T PF00890_consen 39 AFSSGGFDAAGTPPQREAGIE-DSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFG 117 (417)
T ss_dssp GGTCSEEEESSSHSSHHTTTT-CHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEET
T ss_pred ccccCceeeeccccccccccc-ccccccceeeecccccccccchhhhhhhcccceehhhhhhcccccccccccccccccC
Confidence 666665544332211111110 11222222222221111111 0 1123455667777765432 0 0000000
Q ss_pred ceeee-eeee-cCCC------cccch-hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEe
Q 009241 198 GTKIG-GTII-DQNS------QRHTA-ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYL 267 (539)
Q Consensus 198 ~~~~~-~~~~-~~~g------~r~~~-~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~ 267 (539)
..... .... ..+. ..... ..+...+++.|++|+++++|++|+.+++ +|+||++.+ .+|+.++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~- 191 (417)
T PF00890_consen 118 GHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK- 191 (417)
T ss_dssp TESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-
T ss_pred CccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-
Confidence 00000 0111 1111 00011 1244466778899999999999999876 999999984 367666665
Q ss_pred ccCCCCeEEEcCCCccc
Q 009241 268 RNGPKNEIIVSAGALGS 284 (539)
Q Consensus 268 ~~~~a~~VVlAaG~~~s 284 (539)
++.||||+|++..
T Consensus 192 ----A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 192 ----AKAVILATGGFGG 204 (417)
T ss_dssp ----ESEEEE----BGG
T ss_pred ----eeEEEeccCcccc
Confidence 6799999999998
No 16
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.57 E-value=5.3e-14 Score=151.66 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=46.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccH
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSP 285 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp 285 (539)
+...+.+.|++|++++.+++|+.++++ +|.||.+.+. +|+...+ .+|.||||+|+++..
T Consensus 193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~~ 252 (635)
T PLN00128 193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGRA 252 (635)
T ss_pred HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCccc
Confidence 444455679999999999999987443 9999988763 5665555 389999999999853
No 17
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.56 E-value=4.3e-14 Score=149.88 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=45.5
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
++.|++|+++++|++|+.+++ +|+||++.. ++..+.++ ++|.||||||+++...-|+.
T Consensus 185 ~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 185 RFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred hCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence 446999999999999998754 999999865 56665565 45689999999986655443
No 18
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.56 E-value=6.6e-14 Score=149.82 Aligned_cols=194 Identities=19% Similarity=0.194 Sum_probs=104.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL 123 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 123 (539)
+.++||||||+|.+|++||+.|++ |.+|+||||++... +
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~----------------------------------------~ 41 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEAN----------------------------------------L 41 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC----------------------------------------C
Confidence 467999999999999999999999 99999999998311 5
Q ss_pred cchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc----hh--------HHHHHHHHHHcCCCCCCCC
Q 009241 124 GGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ----RW--------QSALRDGLVEVGVLPYNGF 191 (539)
Q Consensus 124 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~g~~~~~~~ 191 (539)
||++.+.++.+.-......+..+.. ++.+.++.+..+......... .+ .....+++++.|++.....
T Consensus 42 GG~s~~s~Gg~~~~~~~~q~~~gi~-ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~ 120 (549)
T PRK12834 42 GGQAFWSLGGLFLVDSPEQRRLGIK-DSLELALQDWLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVV 120 (549)
T ss_pred CCceeccCCceeccCCHHHHhcCcc-cCHHHHHHHHHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecC
Confidence 6666555544333222222223332 222233333222111111111 01 1345567777887542211
Q ss_pred ccC--C--CCcee--eeeeeecCCCcccch-hhhhhhc----CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe--C
Q 009241 192 TYD--H--LYGTK--IGGTIIDQNSQRHTA-ADLLEYA----NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD--A 258 (539)
Q Consensus 192 ~~~--~--~~~~~--~~~~~~~~~g~r~~~-~~~l~~~----~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~--~ 258 (539)
... . ..... ....+....+..... ..+...+ +..|++|++++++++|+.+++ +|+||++.+ .
T Consensus 121 ~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g-----~V~Gv~~~~~~~ 195 (549)
T PRK12834 121 GWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAAARGLVRFRFRHRVDELVVTDG-----AVTGVRGTVLEP 195 (549)
T ss_pred CccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCC-----EEEEEEEEeccc
Confidence 000 0 00000 000000011100111 1122222 244699999999999998754 999998742 1
Q ss_pred C------------CCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241 259 T------------DAEHIAYLRNGPKNEIIVSAGALGSPQLLM 289 (539)
Q Consensus 259 ~------------g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl 289 (539)
+ +..+.+ .+|.||||||+|+...-|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~i-----~AkaVILATGGf~~n~em~ 233 (549)
T PRK12834 196 SDAERGEASSREVVGEFEL-----RAQAVIVTSGGIGGNHELV 233 (549)
T ss_pred ccccccccccccccceEEE-----ecCEEEEeCCCcccCHHHH
Confidence 1 122333 3799999999999766544
No 19
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.54 E-value=9.2e-14 Score=144.07 Aligned_cols=177 Identities=15% Similarity=0.223 Sum_probs=96.4
Q ss_pred CCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccc
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGG 125 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG 125 (539)
.++||||||+|.+|++||..|++|.+|+||||++.. ||
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~------------------------------------------gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLN------------------------------------------EC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCC------------------------------------------CC
Confidence 579999999999999999998559999999998752 34
Q ss_pred hhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---chh---HHHHHHHHHHcCCCCCCCC---ccCCC
Q 009241 126 GTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---QRW---QSALRDGLVEVGVLPYNGF---TYDHL 196 (539)
Q Consensus 126 ~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~---~~~~~ 196 (539)
+|.+..+.+..... .++.+.+++...+.-...... ..+ .....+++++.|+.+.... .+...
T Consensus 41 ~s~~a~ggi~~~~~---------~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~ 111 (433)
T PRK06175 41 NTYLAQGGISVARN---------KDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE 111 (433)
T ss_pred chHHHhHhheeCCC---------CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence 33333322211110 012222232221111111111 111 2334566777777543211 01000
Q ss_pred CceeeeeeeecCCCc-ccchhhhhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCe
Q 009241 197 YGTKIGGTIIDQNSQ-RHTAADLLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNE 274 (539)
Q Consensus 197 ~~~~~~~~~~~~~g~-r~~~~~~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~ 274 (539)
.+......+...+.. +.-...++..+ ++.|++|+++|+|++|+.+++ ++.||.+.+ ++....+. ++.
T Consensus 112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~ 180 (433)
T PRK06175 112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKV 180 (433)
T ss_pred CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCe
Confidence 011000111111111 11112244444 356999999999999998765 899988765 45444443 799
Q ss_pred EEEcCCCccc
Q 009241 275 IIVSAGALGS 284 (539)
Q Consensus 275 VVlAaG~~~s 284 (539)
||||+|+++.
T Consensus 181 VILAtGG~~~ 190 (433)
T PRK06175 181 TILATGGIGG 190 (433)
T ss_pred EEEccCcccc
Confidence 9999999775
No 20
>PRK12839 hypothetical protein; Provisional
Probab=99.51 E-value=2.1e-13 Score=145.79 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=49.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 289 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl 289 (539)
++..+.+.|++|+++|.|++|+.++++ +|+||++.+.++. ..+. ++|.||||||+|....-++
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~ 282 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR 282 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence 444566789999999999999987554 9999998775564 3344 5799999999999855544
No 21
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.51 E-value=2.4e-13 Score=156.27 Aligned_cols=196 Identities=16% Similarity=0.092 Sum_probs=106.4
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCc
Q 009241 42 AKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA 120 (539)
Q Consensus 42 ~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 120 (539)
+..+.++||||||+|.+|++||+++++ |.+|+||||++.
T Consensus 404 i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~---------------------------------------- 443 (1167)
T PTZ00306 404 IAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK---------------------------------------- 443 (1167)
T ss_pred cccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC----------------------------------------
Confidence 334567999999999999999999999 999999999875
Q ss_pred ccccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhccc-ccCCCC---chh---HHHHHHHHHHcCCCCCCCCcc
Q 009241 121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKV-VFRPPM---QRW---QSALRDGLVEVGVLPYNGFTY 193 (539)
Q Consensus 121 ~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~-~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~~~ 193 (539)
+||+|...++.+.-......+..|.. +..+.++....... ...... ..+ .....+++++.|+........
T Consensus 444 --~GG~s~~s~ggi~~~~t~~q~~~gi~-D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~ 520 (1167)
T PTZ00306 444 --LGGNSAKATSGINGWGTRAQAKQDVL-DGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQL 520 (1167)
T ss_pred --CCCchhhcccccccCCchhhhhhccc-ccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeecc
Confidence 56766655544433222222222211 11111111111100 001111 011 233456677777653210000
Q ss_pred CCCCceeeeeeee-cCCCcc----cch-hhhhhhc---CCCCcEEEcCcEEEEEEecCCC----CCCCeEEEEEEEeC--
Q 009241 194 DHLYGTKIGGTII-DQNSQR----HTA-ADLLEYA---NPSGLTVLLHASVHKILFRNKG----KARPVAHGVVFRDA-- 258 (539)
Q Consensus 194 ~~~~~~~~~~~~~-~~~g~r----~~~-~~~l~~~---~~~gv~i~~~t~V~~l~~~~~~----~~~~~v~gV~~~~~-- 258 (539)
.... ........ ..++.. ... ..+...+ .+.|++|+++|+|++|+.++++ ....+|+||++.+.
T Consensus 521 gg~~-~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~ 599 (1167)
T PTZ00306 521 GGAS-RKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASD 599 (1167)
T ss_pred CCCC-CCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEeccc
Confidence 0000 00000000 011110 001 1122222 2369999999999999987521 11238999999875
Q ss_pred -CCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241 259 -TDAEHIAYLRNGPKNEIIVSAGALGSPQ 286 (539)
Q Consensus 259 -~g~~~~~~~~~~~a~~VVlAaG~~~sp~ 286 (539)
+|+.+.+. +|.||||||+|+...
T Consensus 600 ~~g~~~~i~-----AkaVILATGGf~~N~ 623 (1167)
T PTZ00306 600 ASGQVMDLL-----ADAVILATGGFSNDH 623 (1167)
T ss_pred CCCcEEEEE-----eceEEEecCCcccCc
Confidence 67655554 799999999999864
No 22
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.51 E-value=1.4e-13 Score=134.02 Aligned_cols=188 Identities=18% Similarity=0.242 Sum_probs=113.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG 124 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 124 (539)
+.+||||||+|++|+++|..+++ |.+|+|+|+++.....- . +-|
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKi------------------------------l-----~sG 46 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI------------------------------L-----MSG 46 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccccee------------------------------E-----ecC
Confidence 46899999999999999999999 99999999998642111 0 123
Q ss_pred chhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeee
Q 009241 125 GGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGT 204 (539)
Q Consensus 125 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 204 (539)
| +..|-.-... ...+....+=.-..+...+.+.. .+.++++++.+|+..... ..+.
T Consensus 47 g-GrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft------------~~d~i~~~e~~Gi~~~e~----------~~Gr 102 (408)
T COG2081 47 G-GRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT------------PEDFIDWVEGLGIALKEE----------DLGR 102 (408)
T ss_pred C-CCcccccccc-HHHHHHhCCCcchHHHHHHHhCC------------HHHHHHHHHhcCCeeEEc----------cCce
Confidence 3 3223222111 11121111101112222222111 366888899988763211 1112
Q ss_pred eecC-CCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 205 IIDQ-NSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 205 ~~~~-~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
.++. +....-...++..+++.||+|+++++|..|..++. +..+..++|+ .++ ++.+|||+|+..
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~S 167 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGKS 167 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCcC
Confidence 3333 33232233366678889999999999999998774 4555555775 233 899999999998
Q ss_pred cHHHHHhcCCCChhhhhhCCCcceec
Q 009241 284 SPQLLMLSGVGPADHLKAHNITVVLD 309 (539)
Q Consensus 284 sp~lLl~SGig~~~~l~~~gi~~~~~ 309 (539)
-|++-- .|.| ....+.+|+++...
T Consensus 168 ~P~lGs-tg~g-y~iA~~~G~~I~~~ 191 (408)
T COG2081 168 WPKLGS-TGFG-YPIARQFGHTITPL 191 (408)
T ss_pred CCCCCC-Cchh-hHHHHHcCCccccC
Confidence 887743 3444 34456667665433
No 23
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.50 E-value=1.3e-13 Score=144.16 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=49.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+...+++.|++|+++++|++|+.++++ +++||++.+.++..+.+ +++.||||+|++....-|+.
T Consensus 136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHHH
Confidence 445667789999999999999987654 89999988655543333 48999999999987554443
No 24
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.49 E-value=6e-13 Score=142.33 Aligned_cols=63 Identities=13% Similarity=0.257 Sum_probs=49.3
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 291 (539)
Q Consensus 219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S 291 (539)
...+++.|++|+++++|++|+.+++ +|+||++.. +++.+.+. +++.||||+|+|....-|+..
T Consensus 215 ~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 215 RIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred HHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence 3455678999999999999998754 999999875 56555555 446899999999997766543
No 25
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.47 E-value=8.8e-13 Score=141.69 Aligned_cols=63 Identities=13% Similarity=0.192 Sum_probs=49.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
++..+++.|++|++++.|++|+.+++ +|+||.+.+ +++.+.+. +++.||||+|+++...-|+.
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence 44566778999999999999998754 999998865 55555554 45899999999998765554
No 26
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.47 E-value=1.2e-12 Score=140.82 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=47.6
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
...+++.|++|++++.|++|+.+++ +|+||.+.+.++ ...+. +++.||||+|++....-++.
T Consensus 221 ~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~ 282 (574)
T PRK12842 221 AKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA 282 (574)
T ss_pred HHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence 3456678999999999999998765 999999876444 33444 45789999999987666554
No 27
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=6.2e-13 Score=142.76 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=45.9
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|+.+.+. +|.||||||+++.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 207 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR 207 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence 444556789999999999999987544 999999864 356655554 7999999999875
No 28
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.47 E-value=7.4e-13 Score=141.81 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
+...+.+.|+++++++.+++|+.+++ +|+||.+.+. +++...+ .+|.||||||+++
T Consensus 142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~ 198 (566)
T PRK06452 142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence 44445567999999999999998764 9999998864 3444444 4799999999998
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=7.7e-13 Score=143.15 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=44.3
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
.+++.|++|++++.|++|+.+++ +|+||.+.+. +|....+ .+|.||||||+++.
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 233 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERH-----TADAVVLATGGYGN 233 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence 45678999999999999998765 9999998764 5654444 48999999999986
No 30
>PLN02815 L-aspartate oxidase
Probab=99.46 E-value=5.1e-13 Score=142.77 Aligned_cols=183 Identities=18% Similarity=0.196 Sum_probs=97.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL 123 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 123 (539)
+.++||||||+|.+|++||+++++ | +|+||||++. .
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~------------------------------------------~ 63 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP------------------------------------------H 63 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC------------------------------------------C
Confidence 446999999999999999999999 9 9999999975 3
Q ss_pred cchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---chh---HHHHHHHHHHcCCCCCCCCccC---
Q 009241 124 GGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---QRW---QSALRDGLVEVGVLPYNGFTYD--- 194 (539)
Q Consensus 124 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~~~~--- 194 (539)
||+|.+..+.+...... .+..+.+++...+.-....+. ..+ .....+++++.|+++.......
T Consensus 64 gg~s~~a~Ggi~a~~~~--------~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~ 135 (594)
T PLN02815 64 ESNTNYAQGGVSAVLDP--------SDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHL 135 (594)
T ss_pred CCcHHHhhcccccCCCC--------CCCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccc
Confidence 34444443322111000 011222222221111110110 001 2234456677787643211000
Q ss_pred -CCCceeeeeeeecCCCcccch-hhhhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccC
Q 009241 195 -HLYGTKIGGTIIDQNSQRHTA-ADLLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNG 270 (539)
Q Consensus 195 -~~~~~~~~~~~~~~~g~r~~~-~~~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~ 270 (539)
...+....-.+...+...... ..+...+ +..|++|++++.+++|+.++++ ...+|+||.+.+. +|..+.+.
T Consensus 136 ~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~---- 210 (594)
T PLN02815 136 AREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI---- 210 (594)
T ss_pred cCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE----
Confidence 000000000111111000011 1244433 3459999999999999986542 0014899998653 56555553
Q ss_pred CCCeEEEcCCCccc
Q 009241 271 PKNEIIVSAGALGS 284 (539)
Q Consensus 271 ~a~~VVlAaG~~~s 284 (539)
+|.||||||+++.
T Consensus 211 -AkaVILATGG~g~ 223 (594)
T PLN02815 211 -SKVTLLASGGAGH 223 (594)
T ss_pred -eceEEEcCCccee
Confidence 7999999999974
No 31
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.46 E-value=7.5e-13 Score=142.78 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=45.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|+++++++.|++|+.++++ +|.||.+.+ .+|+.+.+ .+|.||||||+++.
T Consensus 172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~ 230 (617)
T PTZ00139 172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR 230 (617)
T ss_pred HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence 444566789999999999999985443 999998865 35655554 48999999999875
No 32
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.46 E-value=4.9e-13 Score=142.97 Aligned_cols=58 Identities=21% Similarity=0.365 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++|+++|.|++|+.++++ +|+||.+.+ .+|..+.+. +|.||||+|+++.
T Consensus 140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~ 198 (543)
T PRK06263 140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ 198 (543)
T ss_pred HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence 444556689999999999999988763 699998876 566655554 7999999999874
No 33
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.45 E-value=8.1e-13 Score=142.30 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|+++++++.|++|+.++++ +|+||.+.+ .+|..+.+. +|.||||||+++.
T Consensus 155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 213 (598)
T PRK09078 155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR 213 (598)
T ss_pred HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence 444566789999999999999987643 999998864 356655553 7999999999986
No 34
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.45 E-value=1.9e-12 Score=139.19 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=48.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+.+.+++.|++|+++++|++|+.+++ +|+||.+.+. +....+. +++.||||+|++.....++.
T Consensus 223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~~~ 285 (581)
T PRK06134 223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVETP-GGLQEIR----ARKGVVLAAGGFPHDPARRA 285 (581)
T ss_pred HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEEC-CcEEEEE----eCCEEEEcCCCcccCHHHHH
Confidence 44466778999999999999998754 9999988763 4344444 34899999999988666543
No 35
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.44 E-value=4.4e-13 Score=142.67 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=43.1
Q ss_pred hhhhcC-CCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYAN-PSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~-~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+. +.|++|++++.|++|+.++ ++ +|+||.+.+ +|..+.+ .+|.||||+|+++.
T Consensus 140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~ 198 (553)
T PRK07395 140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ 198 (553)
T ss_pred HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence 334343 4699999999999999874 33 899998865 5654444 37999999999864
No 36
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.44 E-value=1.5e-12 Score=138.84 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=34.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
++.++||||||+|.+|++||++|++ |.+|+||||++.
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 4668999999999999999999999 999999999975
No 37
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.42 E-value=1e-13 Score=141.16 Aligned_cols=189 Identities=23% Similarity=0.288 Sum_probs=91.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccch
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGG 126 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~ 126 (539)
|||||||+|++|++||+.|++ |.+|+||||++.... +. ...|+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk-----------Ki------------------------l~tG~- 44 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK-----------KI------------------------LITGN- 44 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H-----------HH------------------------HHCGG-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc-----------ce------------------------eecCC-
Confidence 899999999999999999999 999999999976310 00 01232
Q ss_pred hhhccceeecCChhhH-hcCCCCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeee
Q 009241 127 TCINAGFYTRAEPYYA-REAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTI 205 (539)
Q Consensus 127 s~~~~~~~~r~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 205 (539)
...|-.-. ......+ ...+-..+.+.+.+... ....+.+.+++.|+.... ...+.+
T Consensus 45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~ 101 (409)
T PF03486_consen 45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRV 101 (409)
T ss_dssp GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEE
T ss_pred CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEE
Confidence 22222110 1111111 10000111111111111 135577888888875211 011234
Q ss_pred ecCCCcccchhh-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 206 IDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 206 ~~~~g~r~~~~~-~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
++......+... ++..+++.|++|+++++|+.|+.+++ .+..|... ++.. +. ++.||||+|+...
T Consensus 102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~~-----a~~vILAtGG~S~ 167 (409)
T PF03486_consen 102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--YE-----ADAVILATGGKSY 167 (409)
T ss_dssp EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--EE-----ESEEEE----SSS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--cc-----CCEEEEecCCCCc
Confidence 443333333333 55567788999999999999998887 66677662 3332 33 7999999999888
Q ss_pred HHHHHhcCCCChhhhhhCCCcceecCc
Q 009241 285 PQLLMLSGVGPADHLKAHNITVVLDQP 311 (539)
Q Consensus 285 p~lLl~SGig~~~~l~~~gi~~~~~~~ 311 (539)
|++.- +|-| -..++++|+.+....|
T Consensus 168 p~~GS-~G~g-y~~a~~lGh~i~~~~P 192 (409)
T PF03486_consen 168 PKTGS-DGSG-YRIAKKLGHTITPPYP 192 (409)
T ss_dssp GGGT--SSHH-HHHHHHTT--EEEEEE
T ss_pred cccCC-CcHH-HHHHHHCCCcEecCCC
Confidence 87522 2222 2445677776655444
No 38
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.41 E-value=3.2e-12 Score=136.27 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=41.7
Q ss_pred CCCCcEEEcCcEEEEEEecCCC-CCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 223 NPSGLTVLLHASVHKILFRNKG-KARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~-~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+..|++|++++.|++|+.+++. ....+|+||.+.+. +|+...+ .++.||||+|+++.
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence 3469999999999999976410 00028999998763 4554444 48999999999875
No 39
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.41 E-value=2.8e-12 Score=135.70 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=43.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+. .|++|++++.|++|+.+++ ++.||.+.+.+|+.+.+. ++.||||+|+++.
T Consensus 136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~ 191 (510)
T PRK08071 136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG 191 (510)
T ss_pred HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence 333343 6999999999999988765 999999876556554443 7999999999875
No 40
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.40 E-value=2.1e-12 Score=140.01 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=46.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++|+.++.|++|+.+++ +|.||.+.+ .+|+...+. +|.||||||+++.
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence 33456678999999999999998765 999999986 467655553 7999999999875
No 41
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=2.9e-12 Score=137.78 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=45.0
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++++.++.|++|+.++++ +|.||.+.+. +|....+ .+|.||||+|+++.
T Consensus 154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 212 (591)
T PRK07057 154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR 212 (591)
T ss_pred HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence 444556689999999999999987543 8999988653 4544444 48999999999875
No 42
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=2.8e-12 Score=137.87 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=40.0
Q ss_pred CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 226 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 226 gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
++++++++.+++|+.++++ +|+||.+.+. +++...+ .+|.||||||+++.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence 4899999999999987554 9999999864 3443344 48999999999885
No 43
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.40 E-value=3.8e-12 Score=136.66 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
..|+++++++.|++|+.+++ +|.||.+.+ .+|....+ .+|.||||+|+++.
T Consensus 146 ~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence 35899999999999998765 999998764 35654444 38999999999874
No 44
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.38 E-value=4.9e-12 Score=136.01 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=44.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++|++++.|++|+.+++ +|.||.+.+ .+|+...+ .++.||||+|+++.
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence 44556678999999999999998765 999998654 35554444 38999999999875
No 45
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.37 E-value=7e-12 Score=132.38 Aligned_cols=56 Identities=13% Similarity=0.264 Sum_probs=43.1
Q ss_pred hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+++ .|++|++++.|++|+.+++ ++.||.+.+. +....+ .++.||||+|++..
T Consensus 134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence 4444554 6999999999999998765 8999988764 433344 38999999999875
No 46
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.36 E-value=7.6e-12 Score=134.07 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=41.9
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+..|++++.++.|++|+.+++ +|.||.+.+ .+|..+.+. ++.||||+|+++.
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence 336899999999999998765 999998765 356555553 8999999999874
No 47
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.35 E-value=9.4e-12 Score=132.89 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=107.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG 124 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG 124 (539)
.+|||||||||..|+++|++|++ |.+|+||||+... .
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~------------------------------------------~ 42 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA------------------------------------------T 42 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC------------------------------------------C
Confidence 36999999999999999999999 9999999997542 2
Q ss_pred chhhhccceeecCChh---hHhcCCCCHHHHhhhhhhhhc----c-----cccCCCCchhHHHHHHHHHHcCCCCC--CC
Q 009241 125 GGTCINAGFYTRAEPY---YAREAGWDGRLVNESYQWVEK----K-----VVFRPPMQRWQSALRDGLVEVGVLPY--NG 190 (539)
Q Consensus 125 G~s~~~~~~~~r~~~~---~~~~~gw~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~g~~~~--~~ 190 (539)
|+|..|.++...+... .........++. ..+.+... . +........+...+.+.+.+.|++.. ..
T Consensus 43 GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~-~~l~~~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~ 121 (546)
T PRK11101 43 GATGRNHGLLHSGARYAVTDAESARECISEN-QILKRIARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDP 121 (546)
T ss_pred CcccccccceeccchhcccCHHHHHHHHHHH-HHHHHhchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECH
Confidence 4454554443321110 000000000000 01111100 0 01111122333445555666665411 00
Q ss_pred ---C-ccCCCCceeeeeeeecCCCcccchhh---hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCe
Q 009241 191 ---F-TYDHLYGTKIGGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAE 262 (539)
Q Consensus 191 ---~-~~~~~~~~~~~~~~~~~~g~r~~~~~---~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~ 262 (539)
. ..........++.+++ +|.-.+... +...+.+.|++++++++|+.|..+++ +++||.+.+. +++.
T Consensus 122 ~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~ 195 (546)
T PRK11101 122 QQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGET 195 (546)
T ss_pred HHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcE
Confidence 0 0011111123434443 554433322 34466778999999999999998765 8999998753 3443
Q ss_pred EEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 263 HIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 263 ~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
..+. ++.||+|||.+ +..|+...|+
T Consensus 196 ~~i~-----A~~VVnAaG~w-a~~l~~~~g~ 220 (546)
T PRK11101 196 QEIH-----APVVVNAAGIW-GQHIAEYADL 220 (546)
T ss_pred EEEE-----CCEEEECCChh-HHHHHHhcCC
Confidence 4454 89999999974 6667655553
No 48
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.35 E-value=8e-12 Score=134.46 Aligned_cols=58 Identities=24% Similarity=0.341 Sum_probs=44.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCC---CCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNK---GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~---~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|+++++++.|++|+.+++ + +|+||.+.+ .+|+.+.+. +|.||||+|+++.
T Consensus 146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 207 (583)
T PRK08205 146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR 207 (583)
T ss_pred HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence 44456678999999999999998752 3 899998854 355544443 7999999999874
No 49
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.34 E-value=1.1e-11 Score=133.57 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|+++++++.|++|+.+++ +|+||.+.+. +|+...+. ++.||||+|++..
T Consensus 135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence 44445566999999999999998764 9999988653 56544443 7999999999874
No 50
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=1e-11 Score=133.70 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=43.3
Q ss_pred hhhhcC-CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYAN-PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~-~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+. ..|+++++++.|++|+.+++ +++||.+.+. +|....+ .++.||||+|+++.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence 444343 36999999999999998765 9999988653 5544444 38999999999864
No 51
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.33 E-value=1.1e-11 Score=131.29 Aligned_cols=56 Identities=20% Similarity=0.426 Sum_probs=42.2
Q ss_pred hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+ .|++++.++.|++|+.+++ +|+||.+.+ ++....+ .++.||||+|+++.
T Consensus 142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~ 198 (513)
T PRK07512 142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG 198 (513)
T ss_pred HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence 4444443 5899999999999987754 999998875 3333334 37999999999874
No 52
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=7.2e-12 Score=135.58 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++||||||+|.||++||++|++ |.+|+||||++.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 46999999999999999999999 999999999874
No 53
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.29 E-value=2.1e-11 Score=131.26 Aligned_cols=52 Identities=15% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+.|+++++++.|++|+.++++ +|+||.+.+. +|....+ .+|.||||||+++.
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETH-----SADAVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence 458999999999999987654 9999998764 4554444 38999999999875
No 54
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.28 E-value=3.8e-11 Score=128.50 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=41.1
Q ss_pred cCCCCcEEEcCcEEEEEEecCC--CCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 222 ANPSGLTVLLHASVHKILFRNK--GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 222 ~~~~gv~i~~~t~V~~l~~~~~--~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
+.+.+++|+.++.|++|+.+++ + +|+||.+.+ .+|+.+.+. +|.||||||++.
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~ 191 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV 191 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence 3445689999999999998652 3 899998865 356555553 899999999986
No 55
>PRK08275 putative oxidoreductase; Provisional
Probab=99.26 E-value=5.9e-11 Score=127.21 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=44.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+++.|++|++++.|++|+.++++ ++.||.+.+ .+|....+ .+|.||||+|+++.
T Consensus 143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~ 201 (554)
T PRK08275 143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCccc
Confidence 444556789999999999999987443 899998764 35654444 37999999999763
No 56
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.24 E-value=2.2e-10 Score=121.96 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=50.3
Q ss_pred eecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 205 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 205 ~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+++..|...-...+...+++.|++|+++++|++|..+++ ++++|++. +|+. + .++.||+|++...+
T Consensus 212 ~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~ 277 (502)
T TIGR02734 212 WFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHT 277 (502)
T ss_pred EEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHH
Confidence 344445433333355566778999999999999998775 88888764 4543 2 37899999997777
Q ss_pred HHHHHh
Q 009241 285 PQLLML 290 (539)
Q Consensus 285 p~lLl~ 290 (539)
...|+.
T Consensus 278 ~~~l~~ 283 (502)
T TIGR02734 278 YRRLLP 283 (502)
T ss_pred HHHhcC
Confidence 666653
No 57
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.23 E-value=6.9e-11 Score=127.73 Aligned_cols=65 Identities=25% Similarity=0.298 Sum_probs=48.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG 292 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SG 292 (539)
++..+.+.|++++.+++|++|..++ ++ ++++|.+.+. +++...+. ++.||+|||++ +.+++...|
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGaw-s~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGPF-CDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCHh-HHHHHHhcc
Confidence 4456778899999999999998874 33 8999988753 34443443 89999999985 666766554
No 58
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.23 E-value=8e-11 Score=118.79 Aligned_cols=193 Identities=20% Similarity=0.180 Sum_probs=106.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 122 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 122 (539)
.+|||+|||+|..|+++|+.|++ + ++|+||||-.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~--------------------------------------- 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ--------------------------------------- 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence 46999999999999999999999 6 99999999875321
Q ss_pred ccchhhhccceeecCCh-------hhHhcCC---CCHHHHhhh---hhhhhcc-cccCCCCchhHHHHHHHHHHcCCCCC
Q 009241 123 LGGGTCINAGFYTRAEP-------YYAREAG---WDGRLVNES---YQWVEKK-VVFRPPMQRWQSALRDGLVEVGVLPY 188 (539)
Q Consensus 123 lGG~s~~~~~~~~r~~~-------~~~~~~g---w~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~ 188 (539)
++|..|++...-+.. ..+...| | .+..+.+ |.+..+. +.+..+..+..+.+.+.+.+.|+...
T Consensus 43 --~sS~~NSgviHag~~y~p~slka~l~~~g~~~~-~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~ 119 (429)
T COG0579 43 --ESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINE-FAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDL 119 (429)
T ss_pred --ccccCcccceeccccCCCcchhhHHHHHHHHHH-HHHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcce
Confidence 334444444332211 0000000 1 1100111 1111111 11122223334555555666666511
Q ss_pred C--------CCccCCCCceeeeeeeecCCCcccch---hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe
Q 009241 189 N--------GFTYDHLYGTKIGGTIIDQNSQRHTA---ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257 (539)
Q Consensus 189 ~--------~~~~~~~~~~~~~~~~~~~~g~r~~~---~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~ 257 (539)
. ...+....+ ..++.+.+..|.-.+. ..++..+.+.|++|.+|++|++|..+++ .+.-+ ..
T Consensus 120 ~~ld~~~i~~~eP~l~~~-~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~--~~ 191 (429)
T COG0579 120 EILDKEEIKELEPLLNEG-AVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-----GVFVL--NT 191 (429)
T ss_pred eecCHHHHHhhCcccccc-ceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEE--Ee
Confidence 0 001111111 2233333333432222 2356667778999999999999999887 22222 23
Q ss_pred CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCC
Q 009241 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGP 295 (539)
Q Consensus 258 ~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~ 295 (539)
.+|++. ++ +|.||.|||. .+-+|+.++|+.+
T Consensus 192 ~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g~~~ 222 (429)
T COG0579 192 SNGEET-LE-----AKFVINAAGL-YADPLAQMAGIPE 222 (429)
T ss_pred cCCcEE-EE-----eeEEEECCch-hHHHHHHHhCCCc
Confidence 356543 43 8999999997 6788888898865
No 59
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.21 E-value=2e-10 Score=123.93 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=41.7
Q ss_pred hhhhcCCC-CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 218 LLEYANPS-GLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 218 ~l~~~~~~-gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
+...+++. |+++++++.|++|+.+++ +|+||.+.+ .++....+ .++.||||+|++.
T Consensus 138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~ 195 (608)
T PRK06854 138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchh
Confidence 33444444 599999999999998765 899997644 34544444 3899999999986
No 60
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.21 E-value=1.1e-10 Score=112.00 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+|||+|||+|++|+++|++|++ |.+|+||||...
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~ 59 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS 59 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 457999999999999999999999 999999999864
No 61
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.19 E-value=7.6e-10 Score=116.61 Aligned_cols=38 Identities=39% Similarity=0.587 Sum_probs=34.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~ 83 (539)
..+||||||||.+|+++|..||+ |++|+||||......
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG 40 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG 40 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence 36899999999999999999999 999999999876543
No 62
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.19 E-value=1.6e-11 Score=124.74 Aligned_cols=60 Identities=28% Similarity=0.340 Sum_probs=43.5
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
+...+++.|++|+++++|++|..+++ +++||.+. +|+ +. ++.||+|+|. +++.|+-..++
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTTT
T ss_pred hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeecccc
Confidence 44456677999999999999999987 88888764 453 33 7999999997 67777766543
No 63
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.18 E-value=1.1e-08 Score=108.70 Aligned_cols=71 Identities=20% Similarity=0.191 Sum_probs=50.8
Q ss_pred eecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 205 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 205 ~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+++.+|...-...+.+.+++.|++|+++++|++|..+++ ++.+|.+. +|+. + .++.||+|+|...+
T Consensus 222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~ 287 (493)
T TIGR02730 222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDT 287 (493)
T ss_pred ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHH
Confidence 344455433333355677788999999999999998765 88888765 4543 2 27899999998776
Q ss_pred HHHHH
Q 009241 285 PQLLM 289 (539)
Q Consensus 285 p~lLl 289 (539)
-..|+
T Consensus 288 ~~~Ll 292 (493)
T TIGR02730 288 FGKLL 292 (493)
T ss_pred HHHhC
Confidence 65554
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=2e-10 Score=129.52 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=40.7
Q ss_pred CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
..++++.+++.+++|+.+++ +|+||.+.+ .+|+.+.+. +|.||||||+++.
T Consensus 155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~ 206 (897)
T PRK13800 155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR 206 (897)
T ss_pred cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence 35799999999999998754 999998865 357655554 8999999999874
No 65
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.17 E-value=1.6e-10 Score=120.53 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=46.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
+...+++.|++|+++++|++|+.++ ++ +++||...+ ++ ..+ .+|.||||+|+++..+-++.
T Consensus 129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~ 190 (432)
T TIGR02485 129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLR 190 (432)
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHH
Confidence 4456677899999999999999873 33 899987642 22 334 37999999999998776654
No 66
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.16 E-value=3.6e-09 Score=112.41 Aligned_cols=71 Identities=18% Similarity=0.176 Sum_probs=47.8
Q ss_pred CCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241 208 QNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQ 286 (539)
Q Consensus 208 ~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~ 286 (539)
.+|...-...+.+.+++.|.+|+++++|++|..+++ ++++|.+.+. .|....+ .++.||+++....+.+
T Consensus 228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~ 297 (492)
T TIGR02733 228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLE 297 (492)
T ss_pred cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHH
Confidence 344333333355556668999999999999998876 7888887642 1222233 3789999998766555
Q ss_pred HH
Q 009241 287 LL 288 (539)
Q Consensus 287 lL 288 (539)
||
T Consensus 298 ll 299 (492)
T TIGR02733 298 LL 299 (492)
T ss_pred hc
Confidence 43
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.2e-10 Score=103.91 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+.||+|||+|++|++||++||+ |.||+|+||.-.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls 64 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS 64 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence 46899999999999999999999 999999999754
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.15 E-value=4.2e-11 Score=107.70 Aligned_cols=36 Identities=33% Similarity=0.441 Sum_probs=30.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+|||+|||+|++|+++|+.|++ |+||+|+||...
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS 51 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence 347999999999999999999999 999999999865
No 69
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.15 E-value=1.8e-10 Score=122.14 Aligned_cols=37 Identities=41% Similarity=0.610 Sum_probs=34.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.++|||||||||+.|+++|+.|++ |++|+||||++.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~ 40 (508)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL 40 (508)
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567999999999999999999999 999999999864
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.14 E-value=3.1e-10 Score=108.57 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=33.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+|||+|||+|++|+++|+.|++ |.+|+||||...
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 347999999999999999999999 999999999975
No 71
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.14 E-value=2.1e-10 Score=121.11 Aligned_cols=57 Identities=28% Similarity=0.357 Sum_probs=43.3
Q ss_pred hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
+.+...+ .+++++.+..|++|+.++++ ++.||...+. +|+.+.++ +|.||+|+|+.+
T Consensus 144 L~~~~~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g 202 (562)
T COG1053 144 LYEQLLKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG 202 (562)
T ss_pred HHHHHHHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence 3444444 67789999999999988773 5999988765 45554443 799999999998
No 72
>PLN02661 Putative thiazole synthesis
Probab=99.13 E-value=2.2e-10 Score=112.45 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~ 80 (539)
..++||+|||+|++|+++|+.|++ |.+|+||||+..
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 457999999999999999999996 799999999764
No 73
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.13 E-value=5.8e-10 Score=117.08 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+||||||+|.+|+++|..|++ |.+|+||||++
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999 99999999985
No 74
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.10 E-value=6.3e-10 Score=118.01 Aligned_cols=38 Identities=37% Similarity=0.554 Sum_probs=35.0
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|..+|||||||||+.|+++|+.|++ |.+|+||||+..
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~ 40 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL 40 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 35667999999999999999999999 999999999964
No 75
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.10 E-value=1.1e-09 Score=114.69 Aligned_cols=36 Identities=33% Similarity=0.646 Sum_probs=32.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGD 79 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~ 79 (539)
.+.+|||||||||..|+++|+.|++ + .+|+||||..
T Consensus 42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~ 80 (497)
T PTZ00383 42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS 80 (497)
T ss_pred cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 3457999999999999999999999 4 6999999985
No 76
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.09 E-value=2.7e-09 Score=109.98 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=57.8
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCCh---
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPA--- 296 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~--- 296 (539)
.+...|.++++.++|+.+..+++ +.||++.|. .|+.+.++ ++.||.|||. ++-.++...+..+.
T Consensus 173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~~~~~~~~ 240 (532)
T COG0578 173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAGLEQSPHI 240 (532)
T ss_pred HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhcccCCCCc
Confidence 56778999999999999998763 899999985 46666664 8999999997 56666666654432
Q ss_pred hhhhhCCCcceecC
Q 009241 297 DHLKAHNITVVLDQ 310 (539)
Q Consensus 297 ~~l~~~gi~~~~~~ 310 (539)
......|++++.+.
T Consensus 241 ~vr~skGsHlVv~~ 254 (532)
T COG0578 241 GVRPSKGSHLVVDK 254 (532)
T ss_pred cceeccceEEEecc
Confidence 23345577776554
No 77
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.09 E-value=1.1e-09 Score=113.66 Aligned_cols=33 Identities=30% Similarity=0.412 Sum_probs=31.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+||||||+|..|+++|++|++ |.+|+||||++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999973
No 78
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.08 E-value=2.1e-10 Score=114.72 Aligned_cols=71 Identities=24% Similarity=0.246 Sum_probs=53.1
Q ss_pred CCCcccchhh--hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 208 QNSQRHTAAD--LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 208 ~~g~r~~~~~--~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
.+|+...+.. .+. -|.+.|+.+.-..+|.+|+.++++ ++.|++++|. .|+++.|+ +|.||-|||-|.
T Consensus 217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs 287 (680)
T KOG0042|consen 217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS 287 (680)
T ss_pred ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence 3555554432 222 456789999999999999999885 8999999875 68877775 899999999875
Q ss_pred cHHH
Q 009241 284 SPQL 287 (539)
Q Consensus 284 sp~l 287 (539)
-.-.
T Consensus 288 DsIr 291 (680)
T KOG0042|consen 288 DSIR 291 (680)
T ss_pred HHHH
Confidence 4433
No 79
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=4.4e-09 Score=110.39 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=44.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 294 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig 294 (539)
+...+++.|++|+++++|++|..++++ .+. |.+.+ ..|...++. ++.||+|||+ ++.+|+...|+.
T Consensus 184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v~-v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SWT-VTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC----eEE-EEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcCCC
Confidence 555666789999999999999876542 232 33332 234333343 8999999998 467777777664
No 80
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.07 E-value=1.8e-09 Score=111.87 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=32.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--C-CeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~--G-~~VlvlEkG~~ 80 (539)
...|||+|||+|..|+++|++|++ | .+|+||||+..
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 457999999999999999999997 7 49999999753
No 81
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.06 E-value=1.3e-09 Score=111.70 Aligned_cols=35 Identities=37% Similarity=0.416 Sum_probs=32.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+|||+|||+|..|+++|++|++ |.+|+||||+..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence 36999999999999999999999 999999999864
No 82
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=4.5e-09 Score=110.43 Aligned_cols=36 Identities=33% Similarity=0.484 Sum_probs=32.3
Q ss_pred CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
+..+||||||||..|+++|++|++ |.+|+||||...
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 446999999999999999999998 679999999864
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.04 E-value=7.7e-10 Score=116.25 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=32.9
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
.+.++||+|||+|..|+++|++|++ |.+|+|||++..
T Consensus 21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 3557999999999999999999998 679999999863
No 84
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.02 E-value=2.9e-09 Score=106.63 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=43.7
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
++. ..+++|++|+.++.+.+|+.+++. .+.||.+.+.+++...+ .++.||||+|+++
T Consensus 139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g 196 (518)
T COG0029 139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG 196 (518)
T ss_pred HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence 444 345589999999999999999872 56699998654434444 4899999999875
No 85
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.00 E-value=2.7e-09 Score=109.50 Aligned_cols=33 Identities=42% Similarity=0.666 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|||||||+|..|+++|++|++ |.+|+||||+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999764
No 86
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.99 E-value=3.1e-10 Score=117.76 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
.+.+.|++|+++|.|..++.+++ +|++|.+.++.| ..++ .++.||-|+|- -.|+.++|+
T Consensus 99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~ 157 (428)
T PF12831_consen 99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA 157 (428)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccc-----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence 45678999999999999999876 999999987666 4455 48999999993 466667765
No 87
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.98 E-value=5.5e-09 Score=108.65 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
||+|||+|.+|+++|++|++ |.+|+||||+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 79999999999999999999 99999999985
No 88
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.96 E-value=4.2e-09 Score=108.51 Aligned_cols=34 Identities=35% Similarity=0.741 Sum_probs=31.3
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
.|||+|||||.+|+++|++|++ |.+|+||||+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~ 38 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG 38 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 4899999999999999999997 789999999863
No 89
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.94 E-value=3.3e-09 Score=110.20 Aligned_cols=36 Identities=42% Similarity=0.718 Sum_probs=33.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
++|||||||+|++|+++|+.|++ |.+|+||||++.+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~ 40 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA 40 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 36999999999999999999999 9999999999753
No 90
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.89 E-value=5.9e-09 Score=98.08 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=45.0
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccH-HHHH
Q 009241 225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP-QLLM 289 (539)
Q Consensus 225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp-~lLl 289 (539)
.-++|..|++|++|..+++ +|.||++.|.+|+...+. .+.||+|+|+|+-. .-|+
T Consensus 158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lL 213 (477)
T KOG2404|consen 158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELL 213 (477)
T ss_pred HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHH
Confidence 3489999999999996665 999999999888766554 79999999999863 4444
No 91
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.89 E-value=2.5e-08 Score=94.44 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++||||||+|.+|+++|.+||+ |.+|+|||+-+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 47999999999999999999999 999999998664
No 92
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.89 E-value=8.4e-09 Score=106.24 Aligned_cols=36 Identities=39% Similarity=0.750 Sum_probs=33.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.+|||||||+|+||++||+.|++ |.+|+||||+..+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~ 38 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP 38 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 47999999999999999999999 9999999999864
No 93
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.86 E-value=8.2e-09 Score=105.38 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|||+|||+|.+|+++|++|++ |.+|+||||+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 699999999999999999999 999999999864
No 94
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.85 E-value=1.8e-08 Score=95.81 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
.+.+..|+||||+|.-|+++|++||+ |.++++||+-+.+.
T Consensus 3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph 43 (399)
T KOG2820|consen 3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH 43 (399)
T ss_pred ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence 35667999999999999999999999 99999999987643
No 95
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.85 E-value=1.9e-08 Score=103.55 Aligned_cols=30 Identities=47% Similarity=0.711 Sum_probs=28.6
Q ss_pred EEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 51 IVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 51 iVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||||+|++|+++|+.|++ |.+|+||||++.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~ 31 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK 31 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence 699999999999999999 999999999875
No 96
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.84 E-value=1.6e-08 Score=106.63 Aligned_cols=35 Identities=43% Similarity=0.680 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..+|||||||||+||+.||+.||+ |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence 346999999999999999999999 99999999874
No 97
>PRK10015 oxidoreductase; Provisional
Probab=98.84 E-value=2.6e-08 Score=103.42 Aligned_cols=36 Identities=42% Similarity=0.701 Sum_probs=33.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
++|||||||+|++|+++|+.|++ |.+|+||||++.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 46999999999999999999999 9999999999753
No 98
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.84 E-value=4.6e-08 Score=100.97 Aligned_cols=43 Identities=33% Similarity=0.400 Sum_probs=38.2
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPN 86 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~ 86 (539)
|+++|||||||+|.+|+++|..|++ |+|||+||+.+...+...
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence 4668999999999999999999999 999999999988665443
No 99
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.83 E-value=1.1e-07 Score=99.41 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=31.3
Q ss_pred CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERG 78 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG 78 (539)
...+||||||||.+|+++|+.|++ +.+|+||||-
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 457899999999999999999999 6999999993
No 100
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.81 E-value=3e-08 Score=103.48 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=47.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+++.|++++++|+|++|+.+.++ ..++|+||++.. +|+...+.+. +++.||+++|++..
T Consensus 232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t~ 294 (576)
T PRK13977 232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSITE 294 (576)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCcc
Confidence 455778899999999999999986221 123899999975 3444444433 79999999999864
No 101
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.77 E-value=5.2e-08 Score=107.06 Aligned_cols=33 Identities=39% Similarity=0.562 Sum_probs=31.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
++||||||+|.+|+++|+.|++ |.+|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5899999999999999999999 99999999985
No 102
>PRK06185 hypothetical protein; Provisional
Probab=98.73 E-value=8.5e-08 Score=99.41 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=33.9
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+..+|||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 4567999999999999999999999 999999999863
No 103
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.72 E-value=1.3e-07 Score=97.20 Aligned_cols=36 Identities=36% Similarity=0.578 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..++||||||+|.+|+++|++|++ |.+|+|+|+...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 457899999999999999999999 999999999875
No 104
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.71 E-value=6.5e-07 Score=88.41 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=54.8
Q ss_pred ecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccH
Q 009241 206 IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 285 (539)
Q Consensus 206 ~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp 285 (539)
++.+|...-+..+.+.+++.|.+|.+++.|..|+.|++ +++||.+. +|++. + +|.||-.|+-+.|=
T Consensus 258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~ev--~-----sk~VvSNAt~~~Tf 323 (561)
T KOG4254|consen 258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTEV--R-----SKIVVSNATPWDTF 323 (561)
T ss_pred CCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcEE--E-----eeeeecCCchHHHH
Confidence 34455444444466788899999999999999999995 99999998 67653 2 58888889988877
Q ss_pred HHHHhc
Q 009241 286 QLLMLS 291 (539)
Q Consensus 286 ~lLl~S 291 (539)
.-|+.-
T Consensus 324 ~kLlp~ 329 (561)
T KOG4254|consen 324 EKLLPG 329 (561)
T ss_pred HHhCCC
Confidence 555543
No 105
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.66 E-value=1.5e-07 Score=99.45 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=33.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|..+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 37 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK 37 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 3457999999999999999999999 99999999963
No 106
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.65 E-value=1.7e-07 Score=97.87 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=33.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
....+|+|||+|++|+++|.+|.+ |.+|+|+||++.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 345789999999999999999999 999999999875
No 107
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.65 E-value=1.7e-07 Score=98.70 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+.+|||||||+|++|..+|.+|++ |.+|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 457999999999999999999999 99999999975
No 108
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.64 E-value=6e-08 Score=90.16 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=34.9
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241 218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 291 (539)
Q Consensus 218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S 291 (539)
|+. .+++.+++++++++|+++..+++ + .-|.+ .++ +.+. ++.||+|+|.+..|+.+..-
T Consensus 87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~ 146 (203)
T PF13738_consen 87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP 146 (203)
T ss_dssp HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence 444 55667888999999999999876 3 23433 355 2333 69999999999999887644
No 109
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.63 E-value=9.2e-07 Score=88.78 Aligned_cols=66 Identities=29% Similarity=0.405 Sum_probs=48.5
Q ss_pred hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241 218 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 294 (539)
Q Consensus 218 ~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig 294 (539)
++..+ ++.|+++.++++|+.|...+++ -.-|.+.+. .|....+. ++-|+|.||+ ++=.||.+|||.
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcCCh
Confidence 55544 4459999999999999998773 234444442 45555554 8999999999 677888899884
No 110
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.63 E-value=3.4e-07 Score=95.19 Aligned_cols=39 Identities=31% Similarity=0.527 Sum_probs=35.2
Q ss_pred CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 42 AKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 42 ~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+..+|||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 13 STRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 344557999999999999999999999 999999999875
No 111
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.63 E-value=9.1e-08 Score=92.47 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=43.9
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ 286 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~ 286 (539)
.+...|+++..+ .|+.|+.+++ .|.||.+.++.|++.+.. |..-|+|-|.|..=|
T Consensus 157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR 211 (509)
T ss_pred HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence 556789998655 5888888776 899999999888776654 899999999986543
No 112
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.62 E-value=9.2e-08 Score=95.70 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=35.4
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
....|++|+ +++|+.|..+++ +|.||... +|.. +. ++.||+|+|.|.
T Consensus 106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl 152 (392)
T PF01134_consen 106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFL 152 (392)
T ss_dssp HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGB
T ss_pred hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEeccccc
Confidence 345899996 679999999887 99998775 5653 33 799999999944
No 113
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.60 E-value=4.7e-07 Score=93.37 Aligned_cols=36 Identities=33% Similarity=0.525 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence 457999999999999999999999 999999999864
No 114
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.59 E-value=5.4e-07 Score=96.87 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=46.3
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++|+.++.+++|+.++++ +|+||.+.+ .+|+.+.+. +|.||||||+++.
T Consensus 132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~ 190 (570)
T PRK05675 132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR 190 (570)
T ss_pred HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence 444566789999999999999987554 999999865 466655553 8999999999985
No 115
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=4.4e-07 Score=95.69 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 36999999999999999999999 99999999974
No 116
>PLN02985 squalene monooxygenase
Probab=98.56 E-value=3.3e-07 Score=97.07 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+..+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 4557999999999999999999999 999999999753
No 117
>PLN02507 glutathione reductase
Probab=98.56 E-value=5.8e-07 Score=95.15 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 77 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk 77 (539)
..+|||||||+|++|..+|.+|++ |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 347999999999999999999999 999999997
No 118
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=4.3e-07 Score=95.72 Aligned_cols=34 Identities=35% Similarity=0.499 Sum_probs=32.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+|||||||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46999999999999999999999 99999999975
No 119
>PRK07208 hypothetical protein; Provisional
Probab=98.55 E-value=1.2e-06 Score=92.88 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=34.9
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
|++..||+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 3567899999999999999999999 99999999987643
No 120
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.53 E-value=5.6e-07 Score=94.84 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+.+|||+|||+|++|+.+|.+|++ |.+|+|+||++.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~ 39 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN 39 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence 346999999999999999999999 999999999754
No 121
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.52 E-value=4.9e-07 Score=94.57 Aligned_cols=34 Identities=47% Similarity=0.635 Sum_probs=32.2
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||||||||+||+.+|.+|++ |.+|+|+||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 6999999999999999999999 999999999863
No 122
>PRK06847 hypothetical protein; Provisional
Probab=98.50 E-value=4.9e-07 Score=92.64 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+..||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 346799999999999999999999 999999999764
No 123
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.49 E-value=4.8e-07 Score=89.23 Aligned_cols=33 Identities=42% Similarity=0.675 Sum_probs=31.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 799999999999999999999 999999999875
No 124
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.48 E-value=3.9e-07 Score=93.92 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=54.9
Q ss_pred eeeeecCCCcccchhh---hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEc
Q 009241 202 GGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVS 278 (539)
Q Consensus 202 ~~~~~~~~g~r~~~~~---~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlA 278 (539)
++-+.+.+|.-.+... +...|++.|+.|+.+|.|++|....+ +..||+.. .|.. .+..||-|
T Consensus 174 g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNa 238 (856)
T KOG2844|consen 174 GGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNA 238 (856)
T ss_pred eeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEec
Confidence 4445567887776643 44578889999999999999998877 45588775 5654 26889999
Q ss_pred CCCcccHHHHHhcCC
Q 009241 279 AGALGSPQLLMLSGV 293 (539)
Q Consensus 279 aG~~~sp~lLl~SGi 293 (539)
||.+. -..-.++|+
T Consensus 239 aGvWA-r~Vg~m~gv 252 (856)
T KOG2844|consen 239 AGVWA-REVGAMAGV 252 (856)
T ss_pred hhHHH-HHhhhhcCC
Confidence 99876 333444554
No 125
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.48 E-value=3.9e-07 Score=88.93 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=46.9
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe----CCCCe-----EEEEeccCCCCeEEEcCCCccc--HHHHH
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD----ATDAE-----HIAYLRNGPKNEIIVSAGALGS--PQLLM 289 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~----~~g~~-----~~~~~~~~~a~~VVlAaG~~~s--p~lLl 289 (539)
.++..|++|+..+.+..+++++++ .|.||...| ++|.. .-.++ -++.-|+|-|.-++ .+++.
T Consensus 192 kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~---hak~TifAEGc~G~Lskqi~k 264 (621)
T KOG2415|consen 192 KAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF---HAKVTIFAEGCHGSLSKQIIK 264 (621)
T ss_pred HHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee---cceeEEEeccccchhHHHHHH
Confidence 678899999999999999999886 899998754 23321 11111 27889999886554 56666
Q ss_pred hcCC
Q 009241 290 LSGV 293 (539)
Q Consensus 290 ~SGi 293 (539)
+-++
T Consensus 265 kf~L 268 (621)
T KOG2415|consen 265 KFDL 268 (621)
T ss_pred HhCc
Confidence 5544
No 126
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.47 E-value=1e-06 Score=81.59 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+++|||+|++|+++|+.|++ |..|+|+|||.-
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 69999999999999999999 999999999963
No 127
>PRK08244 hypothetical protein; Provisional
Probab=98.47 E-value=1.1e-06 Score=93.47 Aligned_cols=34 Identities=35% Similarity=0.595 Sum_probs=32.2
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999999864
No 128
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.46 E-value=3.8e-06 Score=86.24 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=41.9
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 287 (539)
Q Consensus 219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l 287 (539)
.+..++.|++++++++|+++..+++ ++..+... +|....+. ++.||||+|.+.+..|
T Consensus 266 ~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i~-----AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 266 RRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPLR-----ARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEEE-----CCEEEEeCCCcccCce
Confidence 3455678999999999999987765 67776532 45554554 7999999998755544
No 129
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.45 E-value=1.8e-06 Score=89.73 Aligned_cols=37 Identities=27% Similarity=0.459 Sum_probs=33.8
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~ 80 (539)
..+.+||+|||+|.+|+++|++|.+ |.. ++|+||...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence 4557999999999999999999999 987 999999975
No 130
>PLN02697 lycopene epsilon cyclase
Probab=98.44 E-value=1.4e-06 Score=91.88 Aligned_cols=35 Identities=34% Similarity=0.379 Sum_probs=32.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...|||||||+|++|+++|..|++ |.+|+|||+..
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence 346999999999999999999999 99999999863
No 131
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.44 E-value=7.3e-07 Score=91.75 Aligned_cols=31 Identities=45% Similarity=0.805 Sum_probs=30.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
|||||||+|++|+++|+.|++ |.+|+||||.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 799999999999999999999 9999999997
No 132
>PRK06126 hypothetical protein; Provisional
Probab=98.44 E-value=3.8e-06 Score=90.49 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+.++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457999999999999999999999 999999999763
No 133
>PRK07045 putative monooxygenase; Reviewed
Probab=98.43 E-value=2.4e-06 Score=87.93 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
+.++||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 356999999999999999999999 9999999999753
No 134
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.41 E-value=2.4e-06 Score=88.01 Aligned_cols=35 Identities=37% Similarity=0.595 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++||||||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 36899999999999999999999 999999999875
No 135
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.41 E-value=1.9e-06 Score=88.58 Aligned_cols=33 Identities=30% Similarity=0.614 Sum_probs=31.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence 89999999999999999999 9999999999753
No 136
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.40 E-value=1.5e-06 Score=90.01 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=31.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~ 80 (539)
|||+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 899999999999999999999 7 89999999864
No 137
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.38 E-value=2.4e-06 Score=91.81 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=33.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 456999999999999999999999 999999999875
No 138
>PLN02463 lycopene beta cyclase
Probab=98.38 E-value=2.6e-06 Score=88.43 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 446999999999999999999999 99999999975
No 139
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.38 E-value=5.4e-06 Score=84.14 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=45.7
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
...+++.|++++.+++|+++..+++ ++++|... ++....+ .++.||||+|+|-|..|+..
T Consensus 270 ~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 270 KHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred HHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhh
Confidence 3455678999999999999998876 88887654 3322334 37999999999978888554
No 140
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.36 E-value=1.9e-06 Score=91.01 Aligned_cols=32 Identities=47% Similarity=0.741 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|||||||+|.+|+.+|..+++ |.+|+|||+.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence 799999999999999999999 99999999975
No 141
>PRK07190 hypothetical protein; Provisional
Probab=98.35 E-value=2.2e-06 Score=90.43 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=32.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 45899999999999999999999 999999999875
No 142
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.35 E-value=2.4e-06 Score=88.10 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=32.2
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 5899999999999999999999 999999999874
No 143
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.34 E-value=4.6e-06 Score=85.97 Aligned_cols=32 Identities=38% Similarity=0.609 Sum_probs=30.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+||||||+|++|+++|+.|++ |.+|+||||..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999999999999999 99999999964
No 144
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.33 E-value=1.5e-06 Score=93.40 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+.|||+|||||+||+++|.+|++ |.+|+|+|++.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~ 37 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD 37 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 446999999999999999999999 99999999964
No 145
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.33 E-value=3e-06 Score=87.83 Aligned_cols=33 Identities=36% Similarity=0.625 Sum_probs=31.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+|||+|||+|++|+++|+.|++ |.+|+|+||.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5899999999999999999999 99999999986
No 146
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.33 E-value=4.6e-06 Score=89.70 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=45.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS 284 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s 284 (539)
+...+.+.|++|++++.|++|+.+++ +|+||.+.+ .+|....+. +|.||||||+++.
T Consensus 125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~ 182 (565)
T TIGR01816 125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR 182 (565)
T ss_pred HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence 44456678999999999999998754 999998865 356655553 7999999999975
No 147
>PTZ00058 glutathione reductase; Provisional
Probab=98.33 E-value=5e-07 Score=96.30 Aligned_cols=34 Identities=41% Similarity=0.646 Sum_probs=32.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+|||||||+|++|..+|.+|++ |.+|+||||+.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 47999999999999999999999 99999999974
No 148
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.33 E-value=4.7e-06 Score=80.81 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+|||+|||+|++|-+||+++++ |++...+|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence 58999999999999999999999 999999999653
No 149
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.32 E-value=3.9e-06 Score=86.48 Aligned_cols=36 Identities=36% Similarity=0.516 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 346999999999999999999999 999999999753
No 150
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.31 E-value=1.8e-07 Score=94.77 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=30.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
+|||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 5899999999999999999999 9999999998753
No 151
>PRK06834 hypothetical protein; Provisional
Probab=98.31 E-value=4.2e-06 Score=88.44 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5899999999999999999999 999999999864
No 152
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.31 E-value=3.6e-07 Score=95.67 Aligned_cols=34 Identities=41% Similarity=0.709 Sum_probs=31.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
++|||+|||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36999999999999999999999 99999999964
No 153
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=82.50 Aligned_cols=52 Identities=17% Similarity=0.335 Sum_probs=41.1
Q ss_pred hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCC
Q 009241 216 ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 281 (539)
Q Consensus 216 ~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~ 281 (539)
.++.+.....|++++++|+|+.|++.++ .+.+|... +|.. + .++.||||-|=
T Consensus 177 kni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--i-----~~~~vvlA~Gr 228 (486)
T COG2509 177 KNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--I-----EADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--E-----ecCEEEEccCc
Confidence 3455577789999999999999999887 67777665 5644 2 37999999994
No 154
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.30 E-value=3.8e-06 Score=86.74 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=33.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
....||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 345899999999999999999999 999999999864
No 155
>PRK06370 mercuric reductase; Validated
Probab=98.30 E-value=4.7e-07 Score=95.41 Aligned_cols=36 Identities=53% Similarity=0.761 Sum_probs=33.3
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|..+|||||||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 4557999999999999999999999 99999999974
No 156
>PRK06116 glutathione reductase; Validated
Probab=98.29 E-value=4.7e-07 Score=95.08 Aligned_cols=35 Identities=40% Similarity=0.582 Sum_probs=32.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+.+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~ 37 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR 37 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 347999999999999999999999 99999999963
No 157
>PRK06184 hypothetical protein; Provisional
Probab=98.28 E-value=2.8e-06 Score=90.54 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=32.3
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 5899999999999999999999 999999999864
No 158
>PRK08013 oxidoreductase; Provisional
Probab=98.27 E-value=4e-06 Score=86.65 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5899999999999999999999 999999999875
No 159
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.26 E-value=7.7e-06 Score=84.08 Aligned_cols=32 Identities=41% Similarity=0.645 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.+||+|||+|++|+++|..|++ |.+|+||||.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 5899999999999999999999 9999999998
No 160
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=78.21 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.9
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
+.||||||+|.+|+++|+..++ ..+|.|||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence 5799999999999999999996 689999999754
No 161
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.25 E-value=5.8e-07 Score=92.63 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..+||+||||+|++|.++|.+|++ |.||+|+|+++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 457999999999999999999999 98899999995
No 162
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.24 E-value=6.3e-07 Score=93.89 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=31.3
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+|||+|||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 35 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR 35 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence 6999999999999999999999 99999999953
No 163
>PRK11445 putative oxidoreductase; Provisional
Probab=98.23 E-value=4.3e-06 Score=84.74 Aligned_cols=33 Identities=33% Similarity=0.573 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhcCCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~ 80 (539)
|||+|||+|++|+++|..|++..+|+||||.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence 899999999999999999988789999999864
No 164
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.23 E-value=1.4e-06 Score=92.24 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=27.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|+|||+|++|+++|..|.+ |.+|+++||.+.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~ 35 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD 35 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence 49999999999999999999 999999999876
No 165
>PRK07588 hypothetical protein; Provisional
Probab=98.23 E-value=3.7e-06 Score=86.67 Aligned_cols=32 Identities=31% Similarity=0.387 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 79999999999999999999 999999999864
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.23 E-value=5.2e-06 Score=88.59 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
...|||+|||||++|+++|.+|++ |++|+|+|+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~ 243 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER 243 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 446999999999999999999999 9999999763
No 167
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.22 E-value=9.8e-07 Score=65.87 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=27.0
Q ss_pred EECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 52 VIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 52 VVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|||+|++|+++|++|++ |.+|+|+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 89999999999999999 999999999976
No 168
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.22 E-value=3.6e-06 Score=83.27 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|||+|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 799999999999999999999 99999999986
No 169
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.21 E-value=9.1e-06 Score=83.48 Aligned_cols=33 Identities=36% Similarity=0.657 Sum_probs=31.2
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP 81 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~ 81 (539)
||+|||+|++|+++|..|++ | .+|+|+||.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 89999999999999999999 9 999999998753
No 170
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.7e-06 Score=77.98 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=32.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...+||.||||+|.+|+++|.++|. |.+|.+|+--.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~ 52 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK 52 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence 3558999999999999999999999 99999998643
No 171
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.20 E-value=7.4e-06 Score=84.32 Aligned_cols=32 Identities=41% Similarity=0.609 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 89999999999999999999 999999999864
No 172
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.20 E-value=1.1e-05 Score=77.16 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=31.7
Q ss_pred CCccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~ 81 (539)
..+||+|||+|..|+++|+-|.+ |.+|+|+||..-.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 46899999999999999998866 6899999998753
No 173
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.18 E-value=6.5e-06 Score=87.79 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=30.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 77 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk 77 (539)
...|||+|||||++|+++|.+|++ |.+|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 446999999999999999999999 999999974
No 174
>PRK14694 putative mercuric reductase; Provisional
Probab=98.18 E-value=1.3e-06 Score=92.22 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 557999999999999999999999 99999999974
No 175
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=5.8e-06 Score=79.17 Aligned_cols=35 Identities=40% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..+||++|||+|.+|..+|.++++ |.+|.|+|..-
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f 53 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF 53 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence 458999999999999999999999 99999999873
No 176
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.17 E-value=1.6e-05 Score=83.71 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=29.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|+||||+|++|+.+|..|++ |.+|+|+||+.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 79999999999999999999 99999999975
No 177
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.3e-06 Score=92.03 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+|||+|||+|++|+.+|.+|++ |.+|+|+|+.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5999999999999999999999 99999999743
No 178
>PLN02546 glutathione reductase
Probab=98.15 E-value=1.2e-06 Score=93.44 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER 77 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk 77 (539)
..+|||||||+|++|..+|.+|++ |.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 346999999999999999999999 999999996
No 179
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.14 E-value=3.1e-05 Score=83.46 Aligned_cols=36 Identities=33% Similarity=0.548 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+.++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 467999999999999999999999 999999999864
No 180
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.14 E-value=1.9e-05 Score=80.77 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=31.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~ 35 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV 35 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 799999999999999999999 999999999753
No 181
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.13 E-value=1.7e-06 Score=90.60 Aligned_cols=34 Identities=35% Similarity=0.569 Sum_probs=32.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||||||||++|+.+|.+|++ |.+|+|+|+++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence 6999999999999999999999 999999999753
No 182
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.13 E-value=5.1e-05 Score=79.82 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=31.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
+|+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 48999999999999999999 99999999987643
No 183
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.13 E-value=1.6e-06 Score=91.37 Aligned_cols=32 Identities=41% Similarity=0.702 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|||||||+|++|+++|.+|++ |.+|+|+||++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 799999999999999999999 99999999975
No 184
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.12 E-value=1.1e-05 Score=82.53 Aligned_cols=32 Identities=41% Similarity=0.661 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhh--hc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASL--SQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~L--a~-G~~VlvlEkG~~ 80 (539)
||||||+|+||+++|++| ++ |.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 899999999999999999 77 999999999865
No 185
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.11 E-value=1.6e-06 Score=93.77 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=31.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.+|||||||+|++|..+|.+|++ |++|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 37999999999999999999999 9999999975
No 186
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=1e-05 Score=82.33 Aligned_cols=34 Identities=44% Similarity=0.586 Sum_probs=30.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+|||||||+|=||+-||..+|+ |.+++||--..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~ 37 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL 37 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence 45999999999999999999999 99999986654
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=98.09 E-value=2.2e-06 Score=92.72 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=32.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999 99999999973
No 188
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.08 E-value=3e-05 Score=82.85 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=50.1
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
+...+.+.|++|+++++|+.|..+++ ++.+|++.+. +|+...+. ++.||+|||.+ +..++...|+
T Consensus 134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~~~g~ 199 (516)
T TIGR03377 134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGIW-AGRIAEYAGL 199 (516)
T ss_pred HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCcc-hHHHHHhcCC
Confidence 44567788999999999999998766 8999988753 45444454 89999999974 6777766665
No 189
>PRK07236 hypothetical protein; Provisional
Probab=98.07 E-value=8.3e-05 Score=76.50 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=31.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5899999999999999999999 999999999863
No 190
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.07 E-value=2.7e-06 Score=89.58 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=30.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG 78 (539)
.+|||||||+|++|..+|.+|++ |.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999 6999999985
No 191
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.06 E-value=1.7e-05 Score=81.61 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4799999999999999999999 999999999874
No 192
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.06 E-value=2.6e-06 Score=89.94 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=31.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
..+||+||||+|++|+++|.+|++ |.+|+|||++
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~ 36 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW 36 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 347999999999999999999999 9999999983
No 193
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.05 E-value=3.3e-06 Score=88.12 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=33.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...+|||||||+|++|+++|+.|++ |.+|+||||..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3457999999999999999999999 99999999974
No 194
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.05 E-value=2.8e-06 Score=89.62 Aligned_cols=32 Identities=41% Similarity=0.625 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
+|||||||||++|+.+|.+|++ |.+|+|||+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4999999999999999999999 9999999993
No 195
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.03 E-value=3.8e-06 Score=88.56 Aligned_cols=33 Identities=42% Similarity=0.659 Sum_probs=31.2
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.+|||||||+|++|+.+|.+|++ |.+|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35999999999999999999999 9999999994
No 196
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.01 E-value=3.8e-06 Score=89.09 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=31.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
..|||||||+|++|+.+|.+|++ |.+|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 36999999999999999999999 9999999985
No 197
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=4.8e-06 Score=79.16 Aligned_cols=35 Identities=29% Similarity=0.653 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.||+||||||.+|+++|..|++ |.+||||||-+..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI 36 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence 3899999999999999999999 9999999998763
No 198
>PLN02487 zeta-carotene desaturase
Probab=97.97 E-value=0.00018 Score=76.78 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=44.7
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 288 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL 288 (539)
+.+.+++.|.+|++++.|.+|..+.++.+..+++||.+.+ ++....+ .++.||+|++.....+||
T Consensus 301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence 4456678999999999999999985321112589998852 2332223 379999999977555554
No 199
>PRK06753 hypothetical protein; Provisional
Probab=97.96 E-value=9.3e-05 Score=75.74 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=30.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||+|||||++|+++|..|++ |.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 79999999999999999999 999999999875
No 200
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.94 E-value=6.7e-05 Score=85.98 Aligned_cols=65 Identities=22% Similarity=0.110 Sum_probs=47.2
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
++..+++.|+++++++.|+++.-+ + ++.+|++...+|...++ .++.|+++.|..-+..|+...|.
T Consensus 357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~ 421 (985)
T TIGR01372 357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGG 421 (985)
T ss_pred HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCC
Confidence 444556789999999999998633 2 67788876433444445 38999999998888888766553
No 201
>PRK09897 hypothetical protein; Provisional
Probab=97.93 E-value=5.7e-05 Score=79.88 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=29.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~ 80 (539)
.+|+|||+|++|+++|.+|.+ + .+|.|+|++..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence 479999999999999999987 4 58999999764
No 202
>PRK07538 hypothetical protein; Provisional
Probab=97.92 E-value=6.8e-05 Score=77.85 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 79999999999999999999 999999999764
No 203
>PRK05868 hypothetical protein; Validated
Probab=97.92 E-value=0.00012 Score=74.83 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=30.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 79999999999999999999 999999999865
No 204
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.88 E-value=6.2e-05 Score=77.51 Aligned_cols=34 Identities=38% Similarity=0.522 Sum_probs=31.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.-+|+|||+|++||++|..|.+ |..|+++||.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 4589999999999999999999 999999999976
No 205
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.88 E-value=0.00061 Score=71.41 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
..+||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~ 168 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP 168 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 46899999999999999999999 9999999997643
No 206
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.86 E-value=1.2e-05 Score=82.72 Aligned_cols=36 Identities=39% Similarity=0.481 Sum_probs=33.2
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.+.|||||||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~ 41 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP 41 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 456999999999999999999999 999999999864
No 207
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.86 E-value=9.4e-06 Score=85.69 Aligned_cols=32 Identities=44% Similarity=0.661 Sum_probs=30.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
+||+||||+|++|..+|.+|++ |.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5999999999999999999999 9999999985
No 208
>PRK14727 putative mercuric reductase; Provisional
Probab=97.85 E-value=1e-05 Score=85.52 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..||+||||+|++|+.+|.+|++ |.+|+|+|++..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~ 50 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV 50 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence 46999999999999999999999 999999999753
No 209
>PRK07846 mycothione reductase; Reviewed
Probab=97.84 E-value=1.2e-05 Score=84.26 Aligned_cols=32 Identities=28% Similarity=0.622 Sum_probs=28.0
Q ss_pred CccEEEECCCcchHHHHHhhhcCCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~ 79 (539)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 48999999999999988763 399999999965
No 210
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.84 E-value=1.6e-05 Score=83.08 Aligned_cols=34 Identities=47% Similarity=0.715 Sum_probs=27.2
Q ss_pred cEEEECCCcchHHHHHhhhc-C---CeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N---ASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G---~~VlvlEkG~~~~ 82 (539)
||||||+|++|.++|..|++ + .+|+|||+...+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~ 38 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR 38 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC
Confidence 79999999999999999999 6 8999999987653
No 211
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.82 E-value=1.4e-05 Score=80.78 Aligned_cols=34 Identities=41% Similarity=0.745 Sum_probs=31.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
+||+|||+|++|+++|.+|++ |.+|+|||+.+..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i 36 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI 36 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 799999999999999999999 9999999997653
No 212
>PRK09126 hypothetical protein; Provisional
Probab=97.81 E-value=1.3e-05 Score=82.64 Aligned_cols=34 Identities=38% Similarity=0.530 Sum_probs=32.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 5999999999999999999999 999999999975
No 213
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.81 E-value=1.4e-05 Score=83.72 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=27.3
Q ss_pred CccEEEECCCcchHHHHHhhhcCCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~ 79 (539)
+||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence 59999999999998886543 299999999864
No 214
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.77 E-value=8.8e-05 Score=70.36 Aligned_cols=37 Identities=38% Similarity=0.581 Sum_probs=32.7
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
....||.||||+|..|++.|.+|.- +++|+||||-..
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~ 84 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS 84 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence 3557999999999999999999866 799999999764
No 215
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.8e-05 Score=77.64 Aligned_cols=35 Identities=43% Similarity=0.715 Sum_probs=31.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~ 80 (539)
+.|||||||||++|++||..++. +++ ++|+|++..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~ 38 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP 38 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence 46999999999999999999999 988 888888643
No 216
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=2.1e-05 Score=82.46 Aligned_cols=37 Identities=38% Similarity=0.416 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.+..+|||||||.+|++||..|.+ |.+|+|||+-+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv 50 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV 50 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 446899999999999999999999 9999999998764
No 217
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.75 E-value=6.2e-05 Score=75.49 Aligned_cols=34 Identities=44% Similarity=0.514 Sum_probs=26.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~ 80 (539)
.||+|+||.|++++++|..|.+ + .+++.|||.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 5899999999999999999999 4 89999999764
No 218
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.73 E-value=2.2e-05 Score=80.63 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=31.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 5899999999999999999999 99999999875
No 219
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.72 E-value=0.0011 Score=75.90 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=32.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
..+|+|||||++|+++|..|++ |.+|+|+|+.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV 465 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 5799999999999999999999 9999999998754
No 220
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=2.3e-05 Score=82.44 Aligned_cols=32 Identities=38% Similarity=0.606 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||||+|++|+++|.+|++ |.+|+|+||++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999999763
No 221
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.70 E-value=2.6e-05 Score=80.75 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=31.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
..|||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 36899999999999999999999 9999999996
No 222
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.66 E-value=0.00048 Score=69.54 Aligned_cols=111 Identities=13% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 009241 173 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAH 251 (539)
Q Consensus 173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~ 251 (539)
...+.+++++.|+.... ...+.+++......++.+ ++..+++.||+|+++++|+.| +++ . .
T Consensus 56 ~~d~~~fF~~~Gi~~~~----------e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~ 117 (376)
T TIGR03862 56 AVALQDWARGLGIETFV----------GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-L 117 (376)
T ss_pred HHHHHHHHHHCCCceEE----------CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-E
Confidence 35678888888885221 111244444444444444 555778899999999999999 332 2 3
Q ss_pred EEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCc
Q 009241 252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP 311 (539)
Q Consensus 252 gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~ 311 (539)
.|.+. .+. ..+ .++.||||+|+...|.+-- +|-| ....+.+|+.+....|
T Consensus 118 ~v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~Gs-~g~g-y~la~~lGh~i~~~~P 167 (376)
T TIGR03862 118 RFETP--DGQ-STI-----EADAVVLALGGASWSQLGS-DGAW-QQVLDQRGVSVAPFAP 167 (376)
T ss_pred EEEEC--CCc-eEE-----ecCEEEEcCCCccccccCC-CcHH-HHHHHHCCCcccCCcC
Confidence 44442 222 123 3899999999988886622 2322 2445567776655545
No 223
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.65 E-value=8.5e-05 Score=69.62 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=41.8
Q ss_pred hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
++. +.++.||+++.+ .|+.+. ++.. |+.+|......+..+.. ....+|||+|- +|++||..-+|
T Consensus 153 i~sea~k~~~V~lv~G-kv~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 153 ILSEAEKRGGVKLVFG-KVKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHHhhcCeEEEEe-eeEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence 344 445567999887 567776 3332 88888665323333332 35799999997 78888887655
No 224
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.65 E-value=0.0013 Score=67.24 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=47.0
Q ss_pred hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
...++..||.+.++|+|+.|+++.++ ....++.+++.. +|....+.+. +.+.|++.-|.+-
T Consensus 214 ~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l~--~~DlV~vT~GS~t 274 (500)
T PF06100_consen 214 IRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDLG--PDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEeC--CCCEEEEECCccc
Confidence 34678899999999999999997653 224678888774 6777666655 7899999999753
No 225
>PTZ00367 squalene epoxidase; Provisional
Probab=97.63 E-value=4.1e-05 Score=81.82 Aligned_cols=35 Identities=46% Similarity=0.620 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..+|||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 347999999999999999999999 99999999975
No 226
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.61 E-value=0.00072 Score=70.24 Aligned_cols=32 Identities=38% Similarity=0.598 Sum_probs=29.4
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~ 80 (539)
.|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 48999999999999999999 7 59999999764
No 227
>PLN02268 probable polyamine oxidase
Probab=97.61 E-value=4.1e-05 Score=80.11 Aligned_cols=35 Identities=46% Similarity=0.575 Sum_probs=32.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~ 83 (539)
+|||||+|.+|++||++|.+ |.+|+|||+.+...+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 79999999999999999999 999999999887543
No 228
>PLN02676 polyamine oxidase
Probab=97.61 E-value=7.8e-05 Score=78.71 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=33.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPY 82 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~~ 82 (539)
..+||||||+|.+|+++|++|++ |. +|+|||+.+...
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 36899999999999999999999 97 699999987643
No 229
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.55 E-value=0.00021 Score=71.85 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=45.7
Q ss_pred eeecCCCcccchh---hhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCC
Q 009241 204 TIIDQNSQRHTAA---DLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAG 280 (539)
Q Consensus 204 ~~~~~~g~r~~~~---~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG 280 (539)
.+.+.+|.-.+.. .++..+.+.|++++.+++|+.|..+++ ++.+|... +| . + .++.||+|+|
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g-~--~-----~a~~vV~a~G 190 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG-D--V-----QADQVVLAAG 190 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC-E--E-----ECCEEEEcCC
Confidence 3333455444332 245567788999999999999998665 77777642 44 2 3 3799999999
Q ss_pred CcccHHH
Q 009241 281 ALGSPQL 287 (539)
Q Consensus 281 ~~~sp~l 287 (539)
++ ++.|
T Consensus 191 ~~-~~~l 196 (337)
T TIGR02352 191 AW-AGEL 196 (337)
T ss_pred hh-hhhc
Confidence 74 4443
No 230
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.55 E-value=5.9e-05 Score=75.71 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=33.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.+..||||||+|.+||++|++|.+ |++|+|||..+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~ 42 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV 42 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence 456899999999999999999999 9999999998763
No 231
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.0005 Score=68.89 Aligned_cols=34 Identities=50% Similarity=0.816 Sum_probs=30.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
+..|||||||+|-||+-||..+|+ |.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 568999999999999999999999 9999988654
No 232
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.55 E-value=5e-05 Score=79.82 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=30.9
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~ 82 (539)
+|+|||||.+|++||++|++ | .+|+|+|+.+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 59999999999999999999 8 8999999987643
No 233
>PRK07233 hypothetical protein; Provisional
Probab=97.52 E-value=5.8e-05 Score=78.87 Aligned_cols=35 Identities=31% Similarity=0.492 Sum_probs=32.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~ 83 (539)
+|+|||+|.+|+++|+.|++ |.+|+|||+.+...+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 58999999999999999999 999999999987543
No 234
>PLN02576 protoporphyrinogen oxidase
Probab=97.50 E-value=8.4e-05 Score=79.18 Aligned_cols=38 Identities=32% Similarity=0.380 Sum_probs=33.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY 82 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~ 82 (539)
...+||+|||||.+|+++|++|++ |.+|+|||+.+...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 345799999999999999999998 69999999987643
No 235
>PRK06996 hypothetical protein; Provisional
Probab=97.49 E-value=9e-05 Score=76.56 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=32.1
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C----CeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-N----ASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G----~~VlvlEkG~~ 80 (539)
+++|||+|||+|++|+++|+.|++ | .+|+|+|+.+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 457999999999999999999999 7 47999999763
No 236
>PLN02568 polyamine oxidase
Probab=97.48 E-value=9.2e-05 Score=78.91 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C-----CeEEEEcCCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDSPY 82 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G-----~~VlvlEkG~~~~ 82 (539)
.+..||||||+|.+|+++|.+|++ | .+|+|+|+.....
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 445899999999999999999998 7 8999999988653
No 237
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.45 E-value=0.002 Score=56.97 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=25.5
Q ss_pred EEECCCcchHHHHHhhhc-C-----CeEEEEcCCCC
Q 009241 51 IVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDS 80 (539)
Q Consensus 51 iVVGsG~aG~~aA~~La~-G-----~~VlvlEkG~~ 80 (539)
+|||+|++|++++.+|.+ . .+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 499999999999999877 3 48999999553
No 238
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.45 E-value=0.0024 Score=61.75 Aligned_cols=40 Identities=33% Similarity=0.350 Sum_probs=34.4
Q ss_pred CccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPN 86 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~ 86 (539)
.-++.|||+|.+|+++|+.|+.-.+|.|.|++....+..+
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~ 47 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN 47 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence 3469999999999999999999889999999987655444
No 239
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.44 E-value=9.2e-05 Score=77.44 Aligned_cols=32 Identities=44% Similarity=0.816 Sum_probs=29.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~ 79 (539)
|||||||+|++|+++|+.|++ |.+|+||||.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 799999999999999999996 88999999964
No 240
>PRK10262 thioredoxin reductase; Provisional
Probab=97.44 E-value=9.6e-05 Score=73.94 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=31.5
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
++.+||+|||+|++|+.+|..|++ |.+|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 567999999999999999999999 9999999864
No 241
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.43 E-value=0.0001 Score=76.05 Aligned_cols=33 Identities=45% Similarity=0.639 Sum_probs=30.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc----CCeEEEEcCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ----NASVLLLERG 78 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG 78 (539)
+.+||+|||+|++|+++|+.|++ |.+|+|+||-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 35899999999999999999976 8999999995
No 242
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.42 E-value=0.00011 Score=73.74 Aligned_cols=33 Identities=39% Similarity=0.565 Sum_probs=31.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-+++|||||.+|++||+.||+ |.+|.|+||.+.
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 469999999999999999999 999999999986
No 243
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.39 E-value=0.00012 Score=67.63 Aligned_cols=32 Identities=41% Similarity=0.737 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
||||||+|+||+.+|.+|++ +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 79999999999999999999 999999988764
No 244
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.34 E-value=0.00017 Score=78.67 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.8
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~ 80 (539)
|.+++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4568999999999999999999998 899999999764
No 245
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.32 E-value=0.0015 Score=67.15 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=35.6
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG 283 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~ 283 (539)
+...+.+ |++++++++|+.|..+++ + +.+...+|.. + .++.||+|+|++.
T Consensus 141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~-----~a~~vV~a~G~~~ 190 (381)
T TIGR03197 141 LLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--I-----AASVVVLANGAQA 190 (381)
T ss_pred HHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--E-----EcCEEEEcCCccc
Confidence 4456667 999999999999987654 3 3333335642 2 3799999999753
No 246
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00015 Score=74.19 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=31.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
-|+|+|+|.||+++|++||+ |++|.|+|+++...
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence 38999999999999999999 99999999998754
No 247
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.31 E-value=0.00016 Score=76.36 Aligned_cols=35 Identities=29% Similarity=0.385 Sum_probs=31.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPY 82 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~~ 82 (539)
.||+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 589999999999999999987 57999999987643
No 248
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.28 E-value=0.00018 Score=73.36 Aligned_cols=32 Identities=34% Similarity=0.658 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
||+|||+|++|+++|.+|++ |.+|+|||+++.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 89999999999999999987 899999999874
No 249
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.26 E-value=0.00018 Score=73.09 Aligned_cols=33 Identities=33% Similarity=0.313 Sum_probs=31.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-||+|||||.+|+.+|+.||+ |.+|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 489999999999999999999 999999998775
No 250
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.25 E-value=0.00026 Score=79.78 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
..++|+|||||+||++||+.|++ |.+|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence 35899999999999999999999 9999999998753
No 251
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.24 E-value=0.0002 Score=75.66 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-C------CeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N------ASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G------~~VlvlEkG~~~~ 82 (539)
+|+|||+|.+|++||++|++ | .+|+|||+.+...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 59999999999999999997 4 6899999987643
No 252
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.22 E-value=0.0023 Score=66.96 Aligned_cols=32 Identities=19% Similarity=0.506 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
.|||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 59999999999999999987 478999999874
No 253
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00027 Score=67.68 Aligned_cols=34 Identities=35% Similarity=0.628 Sum_probs=32.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|||+|||+|.+|+++|++|++ |+++.||-+|..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs 36 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS 36 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 6999999999999999999999 999999999875
No 254
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.20 E-value=0.0023 Score=67.16 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~ 80 (539)
.|||||+|++|+.+|..|++ + .+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 49999999999999999998 5 58999999875
No 255
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.16 E-value=0.0003 Score=75.99 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=32.6
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.+..+|+|||||++|+++|..|++ |.+|+|+||.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999 99999999975
No 256
>PRK12831 putative oxidoreductase; Provisional
Probab=97.15 E-value=0.00039 Score=73.08 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
....||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~ 174 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE 174 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 346899999999999999999999 999999998764
No 257
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.11 E-value=0.00034 Score=71.76 Aligned_cols=32 Identities=38% Similarity=0.540 Sum_probs=29.9
Q ss_pred EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSP 81 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~ 81 (539)
++|||||.+|+++|++|.+ + ..|.|+|+++..
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 8999999999999999999 7 899999999764
No 258
>PLN02529 lysine-specific histone demethylase 1
Probab=97.01 E-value=0.00053 Score=75.06 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=33.1
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 46899999999999999999999 9999999998754
No 259
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.99 E-value=0.00049 Score=71.14 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+|+|||||++|+++|..|++ |.+|+|+||.+.
T Consensus 4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 69999999999999999999 999999999764
No 260
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.98 E-value=0.00065 Score=74.81 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=33.9
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
....+|+|||+|.+|+++|+.|++ |.+|+|+|+.....
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence 345799999999999999999999 99999999987643
No 261
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.97 E-value=0.00052 Score=70.20 Aligned_cols=33 Identities=39% Similarity=0.463 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.||+|||+|.+|+.+|+.||+ |.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 479999999999999999999 999999998764
No 262
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.94 E-value=0.0008 Score=71.04 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 35799999999999999999999 9999999998753
No 263
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.89 E-value=0.00071 Score=67.17 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+-+|||||||.+|+++|..|++ |.+|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 4579999999999999999999 999999999543
No 264
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.87 E-value=0.00089 Score=75.96 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+|+|||||+||+++|..|++ |.+|+|+|+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence 35789999999999999999999 999999999865
No 265
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=96.87 E-value=0.00071 Score=71.38 Aligned_cols=65 Identities=17% Similarity=0.353 Sum_probs=43.8
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL 288 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL 288 (539)
+.+.+++.|.+|+++++|++|..++++++..++++|.+.+.++. ..+ .++.||+|+......+||
T Consensus 225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence 44455668999999999999998652100013788887532221 223 379999999987777765
No 266
>PLN02612 phytoene desaturase
Probab=96.86 E-value=0.001 Score=71.70 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...+|+|||+|.+|+++|++|++ |.+|+|+|+.+..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35799999999999999999999 9999999998653
No 267
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.82 E-value=0.00097 Score=68.46 Aligned_cols=40 Identities=38% Similarity=0.482 Sum_probs=30.8
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~ 83 (539)
|+++|||||+|+|..-+.+|..|+. |+|||.|++++.+.+
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg 41 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG 41 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence 5678999999999999999999999 999999999998654
No 268
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.78 E-value=0.001 Score=73.12 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 35799999999999999999999 999999999865
No 269
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.75 E-value=0.0014 Score=50.63 Aligned_cols=32 Identities=44% Similarity=0.683 Sum_probs=30.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 7999999999999999999 9999999999864
No 270
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.74 E-value=0.0014 Score=73.75 Aligned_cols=36 Identities=33% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...+|+|||||++|+++|+.|++ |.+|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 34689999999999999999999 9999999998753
No 271
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.71 E-value=0.0014 Score=73.45 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...||+|||||+||+++|..|++ |.+|+|+|+.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~ 465 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE 465 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45799999999999999999999 999999999654
No 272
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.61 E-value=0.0018 Score=68.16 Aligned_cols=35 Identities=31% Similarity=0.401 Sum_probs=32.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+|+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 35799999999999999999999 999999999875
No 273
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.60 E-value=0.0023 Score=67.09 Aligned_cols=36 Identities=33% Similarity=0.461 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY 82 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~~~ 82 (539)
...|+|||||+||+.+|..|++ |.+|.|+|+.+.+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 4679999999999999999974 89999999998653
No 274
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.59 E-value=0.0021 Score=65.14 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=36.4
Q ss_pred ccccccccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.|+.+.+.. ....+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus 7 ~~~~~~~~~--~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~ 53 (352)
T PRK12770 7 AFMCKEKPP--PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP 53 (352)
T ss_pred hhhcccCCC--CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 455553322 234589999999999999999999 9999999998754
No 275
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.56 E-value=0.0018 Score=65.32 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=30.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~ 81 (539)
..-|||||+|.||++||.+|-+ | .+|+|+|..+..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI 57 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI 57 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence 4569999999999999999998 5 699999998764
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.52 E-value=0.021 Score=58.56 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS 175 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 369999999999999999999 999999999764
No 277
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.48 E-value=0.0025 Score=70.03 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=32.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 34789999999999999999999 9999999998753
No 278
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.40 E-value=0.018 Score=60.67 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=30.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 204 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR 204 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 479999999999999999999 999999999763
No 279
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.39 E-value=0.0029 Score=66.64 Aligned_cols=35 Identities=29% Similarity=0.409 Sum_probs=32.3
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 35799999999999999999999 999999999875
No 280
>PLN03000 amine oxidase
Probab=96.39 E-value=0.0026 Score=70.37 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=33.6
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
...||+|||+|.+|+.+|..|++ |.+|+|+|+.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence 35899999999999999999999 99999999987644
No 281
>PLN02976 amine oxidase
Probab=96.38 E-value=0.0027 Score=72.92 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=32.9
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
..+||+|||+|++|+.+|+.|++ |.+|+|||+.+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v 728 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI 728 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence 45899999999999999999999 9999999997654
No 282
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0018 Score=62.53 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=48.0
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241 222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 291 (539)
Q Consensus 222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S 291 (539)
..-.|++|++|+.-+.|.-|++ +|+|+.|++. .|+.+.+.+ ..|.+--|-+-++.+|.-+
T Consensus 400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence 3457999999999999887766 9999999875 577777764 6788888888888887754
No 283
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.22 E-value=0.036 Score=57.17 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 146 SVVIVGAGTIGLELAASATQRRCKVTVIELAAT 178 (396)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 69999999999999999999 999999999864
No 284
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.22 E-value=0.0044 Score=61.41 Aligned_cols=37 Identities=46% Similarity=0.827 Sum_probs=32.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDS 80 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~ 80 (539)
.+..|||||||||+.|.+.|..|.. .+||+|+|.+..
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 3457999999999999999999877 379999999954
No 285
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.20 E-value=0.033 Score=58.83 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=35.8
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 287 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l 287 (539)
++.|++|+++++|+++..+++ .+ .+.+.+.+|+...+ .++.||+|+|...+..+
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~ 277 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQEL-----EADKVLQAIGFAPRVEG 277 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEE-----EeCEEEECcCcccCCCC
Confidence 356999999999999975433 22 34443235644444 37999999997655543
No 286
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.19 E-value=0.0045 Score=61.66 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~~ 81 (539)
..+|+|||+|.+|+++|+.|+. +. .|+|.|+++..
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 4689999999999999999999 54 56779999874
No 287
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.14 E-value=0.0044 Score=69.09 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=31.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
....|+|||+|+||+++|+.|++ |.+|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 34679999999999999999999 99999999864
No 288
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.14 E-value=0.0037 Score=70.00 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
+|+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 59999999999999999998 589999999875
No 289
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.13 E-value=0.0047 Score=67.78 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 35789999999999999999999 9999999998753
No 290
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.04 E-value=0.0054 Score=64.92 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..+|+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4699999999999999999999 999999999875
No 291
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.01 E-value=0.0051 Score=66.58 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=31.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.-+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~ 172 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL 172 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 4579999999999999999999 9999999998653
No 292
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.00 E-value=0.041 Score=58.23 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 68999999999999999988 999999998763
No 293
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.99 E-value=0.0059 Score=63.32 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=30.9
Q ss_pred ccEEEECCCcchHHHHHhhh-c-CCeEEEEcCCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLS-Q-NASVLLLERGDSPY 82 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La-~-G~~VlvlEkG~~~~ 82 (539)
.-|+|||||++|+.+|.+|+ + |.+|.|+||.+.+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 45999999999999999865 5 99999999998754
No 294
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.88 E-value=0.061 Score=56.88 Aligned_cols=33 Identities=27% Similarity=0.537 Sum_probs=29.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 369999999999999999999 999999999864
No 295
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=95.84 E-value=0.051 Score=61.30 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=41.7
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV 293 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi 293 (539)
++.|+++++++.|++|..++.+ .+..|... +|+. + .++.||+|+|.--+..|+..+|+
T Consensus 198 ~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 198 ESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence 4578999999999999765432 44555553 5653 3 37999999998877777666765
No 296
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.79 E-value=0.092 Score=56.18 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=41.1
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241 225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLM 289 (539)
Q Consensus 225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl 289 (539)
.|+++++++.|+++..+++ ++.+|++.+. ++....+ .++.||+|.|..-++.+|-
T Consensus 401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~ 456 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK 456 (515)
T ss_pred CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence 5899999999999976544 7888888653 3444444 3799999999877766654
No 297
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.74 E-value=0.044 Score=61.59 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=27.2
Q ss_pred EEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ----NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~----G~~VlvlEkG~~ 80 (539)
|||||+|++|+.+|.+|.+ +.+|+|+|+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 6899999999999998766 468999999875
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.64 E-value=0.097 Score=56.03 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=42.7
Q ss_pred CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
.|+++++++.|+++..+++ ++.+|++.+. +|+..++ .++.|+++.|...++.++..
T Consensus 400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~ 456 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKG 456 (517)
T ss_pred CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhh
Confidence 5899999999999986544 8889988753 4544445 37999999998777776543
No 299
>PRK12831 putative oxidoreductase; Provisional
Probab=95.57 E-value=0.066 Score=56.37 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|+|||+|..|+-+|..|+. |.+|.|+++..
T Consensus 283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 69999999999999999999 99999998753
No 300
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.16 Score=52.05 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=28.5
Q ss_pred ccEEEECCCcchHHHHHhhhc---C-CeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ---N-ASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~---G-~~VlvlEkG~~ 80 (539)
++|+|||+|++|..+|.+|.+ . .+|.|+|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 689999999999999999987 2 34999999765
No 301
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=95.55 E-value=0.068 Score=60.14 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=29.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence 59999999999999999999 999999998763
No 302
>PRK13984 putative oxidoreductase; Provisional
Probab=95.49 E-value=0.013 Score=64.07 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45789999999999999999999 999999999875
No 303
>PRK10262 thioredoxin reductase; Provisional
Probab=95.43 E-value=0.17 Score=50.53 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=39.8
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC--CCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDAT--DAEHIAYLRNGPKNEIIVSAGALGSPQLL 288 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~--g~~~~~~~~~~~a~~VVlAaG~~~sp~lL 288 (539)
++.|+++++++.|+++..+++ ++.+|++.+.. +....+ .++.||++.|.-....++
T Consensus 196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF 253 (321)
T ss_pred cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh
Confidence 457899999999999975543 67788876432 233334 489999999976666544
No 304
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.37 E-value=0.082 Score=55.44 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=29.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 369999999999999999999 999999998753
No 305
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=95.23 E-value=0.11 Score=54.01 Aligned_cols=32 Identities=31% Similarity=0.684 Sum_probs=30.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-++|||+|..|+-.|.-++. |.+|.|||+++.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 49999999999999999999 999999999975
No 306
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.22 E-value=0.13 Score=51.30 Aligned_cols=38 Identities=34% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSP 81 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~ 81 (539)
|.+.+|+|.||-|+.-+..|.-|.+ +.+++.|||-+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 4567999999999999999999999 5899999998853
No 307
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.22 E-value=0.018 Score=59.38 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=30.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDSP 81 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~~ 81 (539)
.+|||||+|++|+.+|..|++ |. +|+|+++.+..
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~ 40 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL 40 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence 479999999999999999999 64 89999998653
No 308
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=94.95 E-value=0.27 Score=48.25 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=29.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-.|+|||+|..|+-+|..|++ +.+|.++++++
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 379999999999999999999 99999998864
No 309
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.94 E-value=0.1 Score=54.74 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=25.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.++|||+|..|+-.|..|++ |.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57888888888888888888 88888888765
No 310
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.017 Score=57.17 Aligned_cols=41 Identities=37% Similarity=0.522 Sum_probs=36.5
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~ 84 (539)
|.++|||||+|.|..=|+.+..|+- |.+||.++|++...+.
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence 4567999999999999999999999 9999999999986543
No 311
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=94.88 E-value=0.027 Score=54.10 Aligned_cols=37 Identities=27% Similarity=0.512 Sum_probs=32.0
Q ss_pred CCCccEEEECCCcchHHHHHhhhc--C-CeEEEEcCCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDSP 81 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~--G-~~VlvlEkG~~~ 81 (539)
.++|.|+|||||.+|+.+|.++.. | -+|.|||-....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 457999999999999999999988 6 489999977654
No 312
>PRK14727 putative mercuric reductase; Provisional
Probab=94.87 E-value=0.11 Score=55.09 Aligned_cols=30 Identities=23% Similarity=0.438 Sum_probs=25.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 58999999999999998888 8899888764
No 313
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=94.84 E-value=0.047 Score=56.27 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..||.+|||+|.+|+-+|..|+| |.+|.++-|-.
T Consensus 54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~ 88 (642)
T KOG2403|consen 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF 88 (642)
T ss_pred eeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence 35999999999999999999999 99999987754
No 314
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.032 Score=54.90 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY 82 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~~~ 82 (539)
.-|+|||||+||..+|.+|-+ +.+|-|.||-|.+.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 369999999999999999665 68999999998754
No 315
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.72 E-value=0.032 Score=58.13 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=32.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
..+|||||+|.+|+.+|.+|.. +.+|+|||+.+...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~ 46 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML 46 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc
Confidence 4689999999999999999988 89999999987643
No 316
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.53 E-value=0.04 Score=57.29 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=31.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.|.|||||++|+.+|..|+. |.+|++.|+-+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 679999999999999999999 999999999875
No 317
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.073 Score=52.85 Aligned_cols=40 Identities=35% Similarity=0.409 Sum_probs=36.1
Q ss_pred CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241 44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83 (539)
Q Consensus 44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~ 83 (539)
.+.+|||||||.|..=.++|...+. |.+||=|++.+++.+
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg 45 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG 45 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence 3568999999999999999999999 999999999987654
No 318
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.80 E-value=0.059 Score=54.85 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhhc----CCeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~~~ 82 (539)
.|||||+|+||+.+|.+|.+ +.+|+|+|+.+...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~ 38 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP 38 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence 38999999999999999963 58999999987643
No 319
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.77 E-value=0.073 Score=51.46 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=29.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|.+|.-||+.+|+ |.+|.|.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 48999999999999999999 999999997764
No 320
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.72 E-value=0.058 Score=55.24 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=43.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 294 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig 294 (539)
+...+++.|++++++++|+++..+++ . ..|.. .+|+. + .++.||+|+|.-.++.++..+|+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence 33456678999999999999976543 2 23443 35643 3 379999999987777777767654
No 321
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=93.45 E-value=0.49 Score=47.60 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=27.4
Q ss_pred CCCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241 45 VSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 80 (539)
Q Consensus 45 ~~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~ 80 (539)
.....|+|||||-+++-++..|.+ + .+|.++=|++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 345679999999999999999998 5 48999888764
No 322
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.34 E-value=0.063 Score=59.69 Aligned_cols=46 Identities=28% Similarity=0.401 Sum_probs=37.2
Q ss_pred ccccccccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 34 ~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.||....+...+ -.-|.|||||++|+++|-.|-+ |..|+|-||...
T Consensus 1773 gwm~p~pp~~rt-g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRT-GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cCCccCCccccc-CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 466554433322 3679999999999999999999 999999999876
No 323
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=93.12 E-value=0.4 Score=50.46 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=28.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
-.|+|||+|..|+-+|..|++ |. +|.++++.+
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 369999999999999999998 87 899998753
No 324
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=92.81 E-value=0.28 Score=48.37 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=38.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCc
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL 282 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~ 282 (539)
++..++.++|.+..++.|+.|.++... +...+..+.+. .+++..... +.+.|++.-|.+
T Consensus 233 li~yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsi 291 (587)
T COG4716 233 LITYLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSI 291 (587)
T ss_pred HHHHHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEeccee
Confidence 344678899999999999999998652 11122333322 245443333 678899988875
No 325
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.13 Score=50.55 Aligned_cols=38 Identities=32% Similarity=0.456 Sum_probs=34.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~ 84 (539)
+|||||+|.|.-=++.+..|+- |.+||.|+|.+...+.
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence 6999999999999999999999 9999999999976543
No 326
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=0.094 Score=47.86 Aligned_cols=33 Identities=24% Similarity=0.270 Sum_probs=29.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
...|+|||||+++-++|+++++ .+|-+|.|-+-
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~ 41 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM 41 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence 3469999999999999999999 99999999764
No 327
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=92.51 E-value=0.097 Score=54.01 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=32.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
.-+++|||+|..|+.+|..|++ |.+|+++|+.+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~ 171 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL 171 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence 3589999999999999999999 9999999999864
No 328
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.34 E-value=0.13 Score=52.35 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=32.2
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYGNP 85 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~~~~ 85 (539)
-+||||||.+|+.+|.+|.. - .+|++||+.......+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p 44 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP 44 (405)
T ss_pred eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch
Confidence 49999999999999999999 5 8899999998754433
No 329
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=92.28 E-value=0.53 Score=52.91 Aligned_cols=31 Identities=26% Similarity=0.407 Sum_probs=27.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCe-EEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~ 79 (539)
.|+|||+|..|+-+|..|.+ |.+ |.|+++.+
T Consensus 572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 59999999999999999999 886 99998763
No 330
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.62 E-value=0.16 Score=44.36 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=28.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
++|||+|..|+..|.+|++ |.+|.++-|.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999 99999998876
No 331
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.05 E-value=0.26 Score=46.33 Aligned_cols=32 Identities=34% Similarity=0.666 Sum_probs=29.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|--|..+|..|++ |..|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 48999999999999999999 999999999864
No 332
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.96 E-value=0.25 Score=43.63 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=27.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|.|||+|..|.++|..|++ |.+|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 7899999999999999999 99999998864
No 333
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.88 E-value=0.24 Score=44.76 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=26.6
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||+|..|...|..++. |.+|.+++..+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 7899999999999999999 999999999753
No 334
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=89.64 E-value=0.28 Score=51.35 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 191 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST 191 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 69999999999999999999 999999999875
No 335
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=89.59 E-value=0.26 Score=46.27 Aligned_cols=31 Identities=42% Similarity=0.730 Sum_probs=27.5
Q ss_pred EEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
+||||||.||-++|..|+. ...||||-+.+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 7999999999999999998 578999977653
No 336
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.38 E-value=0.33 Score=44.61 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=27.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus 168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 569999999999999999999 999999988764
No 337
>PRK07846 mycothione reductase; Reviewed
Probab=89.22 E-value=0.32 Score=51.10 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=30.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 379999999999999999999 999999999875
No 338
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=89.05 E-value=0.32 Score=51.35 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 69999999999999999999 999999999875
No 339
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=88.96 E-value=0.35 Score=50.92 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 204 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ 204 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 69999999999999999999 999999999875
No 340
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=88.95 E-value=0.33 Score=51.21 Aligned_cols=33 Identities=36% Similarity=0.646 Sum_probs=30.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 200 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR 200 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 469999999999999999999 999999999875
No 341
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.81 E-value=0.33 Score=48.06 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 49999999999999999999 99999999975
No 342
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=88.77 E-value=0.33 Score=50.93 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=30.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 200 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHER 200 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 69999999999999999999 999999999875
No 343
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=88.67 E-value=2.1 Score=43.91 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=43.3
Q ss_pred cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241 222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290 (539)
Q Consensus 222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~ 290 (539)
.++.|++++.++.+..+..+..| +++.|... +|+. + .++.||+..|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~--dg~~--l-----~adlvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSDG----EVSEVKLK--DGKT--L-----EADLVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCCCC----cEEEEEec--cCCE--e-----ccCeEEEeeccccccccccc
Confidence 34678999999999999888765 88888877 4643 2 48999999998666666554
No 344
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.48 E-value=0.31 Score=50.38 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=23.4
Q ss_pred cchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 57 TAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 57 ~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
.+|++||++|++ |.+|+|+|+.+...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 379999999999 99999999998754
No 345
>PRK06370 mercuric reductase; Validated
Probab=88.22 E-value=0.41 Score=50.52 Aligned_cols=33 Identities=30% Similarity=0.587 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 205 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR 205 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 369999999999999999999 999999999875
No 346
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=88.17 E-value=0.38 Score=28.02 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=9.7
Q ss_pred CCcchhhHHH-HHHHHH
Q 009241 1 MDLRCLRLSF-VATLAT 16 (539)
Q Consensus 1 ~~~~~~~~~~-~~~~~~ 16 (539)
|+||.|+.+. ++++++
T Consensus 2 ~sRR~fLk~~~a~~a~~ 18 (26)
T PF10518_consen 2 LSRRQFLKGGAAAAAAA 18 (26)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 6899985544 444434
No 347
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.07 E-value=0.42 Score=50.65 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 59999999999999999999 99999999765
No 348
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=87.99 E-value=0.5 Score=42.90 Aligned_cols=31 Identities=35% Similarity=0.528 Sum_probs=25.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||.|..|+.+|..||+ |.+|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 7899999999999999999 999999998753
No 349
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.93 E-value=0.45 Score=50.23 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=30.3
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 369999999999999999999 999999999875
No 350
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.63 E-value=0.54 Score=53.24 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSP 81 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~ 81 (539)
.|||||+|++|+.+|.+|.+ +.+|+|+++.+..
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 69999999999999999864 4689999998864
No 351
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=87.57 E-value=0.47 Score=49.99 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 69999999999999999999 999999999875
No 352
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.46 E-value=0.49 Score=49.82 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=29.0
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|+|||.|.+|+++|..|++ |.+|.+.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 8999999999999999999 999999998764
No 353
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=87.41 E-value=0.48 Score=49.39 Aligned_cols=32 Identities=31% Similarity=0.657 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 171 (427)
T TIGR03385 139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSER 171 (427)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence 69999999999999999999 999999999875
No 354
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=87.33 E-value=0.48 Score=49.54 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 69999999999999999999 999999999875
No 355
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=87.04 E-value=0.52 Score=49.70 Aligned_cols=32 Identities=28% Similarity=0.581 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 209 (461)
T PRK05249 177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDR 209 (461)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 59999999999999999999 999999999875
No 356
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.94 E-value=0.55 Score=46.68 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|+..|..|++ |.+|.++.|++
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 49999999999999999999 99999998875
No 357
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=86.90 E-value=0.53 Score=49.45 Aligned_cols=33 Identities=21% Similarity=0.455 Sum_probs=30.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK 203 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 369999999999999999999 999999999875
No 358
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=86.88 E-value=0.53 Score=49.59 Aligned_cols=32 Identities=44% Similarity=0.726 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 203 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDR 203 (460)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 69999999999999999999 999999999875
No 359
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.46 E-value=0.56 Score=38.73 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=27.7
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|||||.|..|..+|..|.+ +.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 7999999999999999999 779999999863
No 360
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.36 E-value=0.48 Score=38.38 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=27.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
--|+|||+|..|..-+..|.+ |.+|.|+...
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 469999999999999999999 9999999765
No 361
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=85.90 E-value=0.64 Score=48.74 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=30.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..+++ |.+|.|+|+++.
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 59999999999999999999 999999999875
No 362
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=85.79 E-value=0.56 Score=47.84 Aligned_cols=34 Identities=32% Similarity=0.683 Sum_probs=29.4
Q ss_pred CccEEEECCCcchHHHHHhhhc--C------------CeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ--N------------ASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~--G------------~~VlvlEkG~~ 80 (539)
.-+++|||||+.|.=.|-+|++ . .+|.|+|+++.
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ 202 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR 202 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence 3579999999999999998877 2 28999999986
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=85.64 E-value=0.71 Score=50.63 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-.|..|++ |.+|.|||+++.
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ 346 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ 346 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 69999999999999999999 999999999875
No 364
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.63 E-value=0.62 Score=46.17 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 48999999999999999999 99999999875
No 365
>PRK04148 hypothetical protein; Provisional
Probab=85.38 E-value=0.75 Score=39.05 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=27.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus 19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 49999999 88888999999 999999998764
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.23 E-value=0.75 Score=48.29 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=29.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-.|+|||+|..|+.+|..|++ |.+|.+.|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 358999999999999999999 99999999864
No 367
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=85.22 E-value=0.71 Score=49.89 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 69999999999999999999 999999999874
No 368
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=85.18 E-value=0.75 Score=45.37 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=27.5
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
+.|||+|..|...|..|++ |.+|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 8999999999999999999 9999999984
No 369
>PTZ00058 glutathione reductase; Provisional
Probab=85.14 E-value=0.7 Score=49.75 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=30.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~ 271 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR 271 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence 369999999999999999999 999999999875
No 370
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.12 E-value=0.72 Score=45.54 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=27.1
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLER 77 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEk 77 (539)
|.|||+|..|+..|..|++ |.+|.++.+
T Consensus 3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 8999999999999999999 999999998
No 371
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.09 E-value=0.86 Score=42.03 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=27.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
-++|||+|-.|...|..|.+ |.+|+|+++.
T Consensus 12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 59999999999999999999 9999999753
No 372
>PLN02507 glutathione reductase
Probab=84.85 E-value=0.73 Score=49.04 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 69999999999999999999 999999999875
No 373
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=84.84 E-value=0.83 Score=48.22 Aligned_cols=32 Identities=28% Similarity=0.558 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 69999999999999999999 999999999875
No 374
>PRK06116 glutathione reductase; Validated
Probab=84.72 E-value=0.8 Score=48.11 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=30.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 369999999999999999999 999999999875
No 375
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=84.53 E-value=2.2 Score=45.12 Aligned_cols=34 Identities=24% Similarity=0.256 Sum_probs=31.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY 82 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~ 82 (539)
+|+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 48999999999999999999 99999999987643
No 376
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.11 E-value=1 Score=41.70 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=27.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
-|+|||+|..|..-|..|.+ |.+|.|+...
T Consensus 11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 59999999999999999999 9999999754
No 377
>PLN02546 glutathione reductase
Probab=83.91 E-value=0.88 Score=49.02 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=30.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 69999999999999999999 999999999875
No 378
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=83.91 E-value=0.91 Score=38.85 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=28.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~ 79 (539)
.--++|||+|.+|-.++..|++ |.+ |.|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 3469999999999999999999 875 99998753
No 379
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.82 E-value=1 Score=43.46 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=31.4
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
..-+|+|||+|..|.-+|.-+.. |.+|.+||....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 34689999999999999999999 999999999853
No 380
>PRK13748 putative mercuric reductase; Provisional
Probab=83.79 E-value=0.91 Score=49.20 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.++|||+|..|+-+|..|++ |.+|.|+|+..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 69999999999999999999 99999999864
No 381
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=83.58 E-value=1.1 Score=39.45 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=26.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEc
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLE 76 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlE 76 (539)
-|+|||+|..|.--|..|.+ |.+|.|+.
T Consensus 15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 49999999999999999999 99999994
No 382
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=83.41 E-value=1.1 Score=43.02 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=25.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-------CeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-N-------ASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G-------~~VlvlEkG~ 79 (539)
..+++|||+|..|+++|+.+.+ . .+|.|++--.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 3579999999999999977666 3 5777776544
No 383
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.97 E-value=1.2 Score=37.97 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=29.2
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
.-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 359999999999999999999 96 8999998765
No 384
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.96 E-value=1.1 Score=44.52 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=28.4
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|.|||+|..|...|..++. |.+|.+.+..+
T Consensus 10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 8999999999999999999 99999999875
No 385
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.94 E-value=0.93 Score=44.43 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=28.8
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||+|..|...|..|++ |.+|+++++.+.
T Consensus 4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 8999999999999999999 999999998753
No 386
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.69 E-value=1.1 Score=43.96 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 38999999999999999999 99999999765
No 387
>PRK14694 putative mercuric reductase; Provisional
Probab=82.68 E-value=1.1 Score=47.27 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.++|||+|..|+-+|..|++ |.+|.|++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARLGSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence 69999999999999999999 99999999754
No 388
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.62 E-value=1.1 Score=43.94 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|..|...|..++. |.+|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 48999999999999999999 999999998864
No 389
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=82.49 E-value=1.1 Score=45.60 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..+|+|||+|..|..+|..|.. |.+|.++++.+
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 3569999999999999999999 99999999864
No 390
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.44 E-value=1.2 Score=45.87 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|+|.|+.|..+|..|.. |.+|+++|..+.
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 59999999999999999988 999999998753
No 391
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=82.41 E-value=1.1 Score=46.96 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=29.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|+-+|..|++ |.+|.|+++...
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 69999999999999999999 999999998753
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=82.18 E-value=1.2 Score=39.72 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=27.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.-|+|+|+|.+|..||.-|.. |.+|.++|..+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 569999999999999999999 99999999864
No 393
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=81.75 E-value=1.4 Score=40.50 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v 56 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV 56 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 4569999999999999999999 97 7999988743
No 394
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=81.52 E-value=1.2 Score=45.05 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~ 80 (539)
.++|||+|..|+-+|..|++ |.+ |.|+++...
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 59999999999999999988 886 999998653
No 395
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=81.49 E-value=1.2 Score=39.19 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=26.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-++|+|-|..|-.+|.+|.. |.+|.|.|..|.
T Consensus 25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi 57 (162)
T PF00670_consen 25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI 57 (162)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence 49999999999999999999 999999999874
No 396
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.34 E-value=1.2 Score=43.67 Aligned_cols=33 Identities=36% Similarity=0.442 Sum_probs=30.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-||.|||+|.+|.-+|+.||- =.-|.|||=.+.
T Consensus 355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred ceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 489999999999999999999 678999998765
No 397
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.83 E-value=1.6 Score=42.06 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.3
Q ss_pred CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 4569999999999999999999 9 58999997654
No 398
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=80.71 E-value=1.2 Score=47.14 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 59999999999999999999 9999999974
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=80.71 E-value=1.4 Score=44.34 Aligned_cols=31 Identities=35% Similarity=0.640 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 38999999999999999999 99999999853
No 400
>PTZ00052 thioredoxin reductase; Provisional
Probab=80.62 E-value=1.3 Score=47.14 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
.++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 69999999999999999999 9999999874
No 401
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=80.39 E-value=1.7 Score=40.08 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=28.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-++|+|.|..|..+|.+|.+ |.+|++.++.+
T Consensus 30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 49999999999999999999 99999988653
No 402
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.25 E-value=1.4 Score=43.23 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=28.7
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||+|..|...|..|+. |.+|+++|+.+.
T Consensus 6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 8999999999999999999 999999998653
No 403
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=79.56 E-value=1.9 Score=45.03 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~ 81 (539)
-.|+|||+|.+|.-+|-+|++ |.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 369999999999999999999 9999999998753
No 404
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.52 E-value=2.2 Score=37.97 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=28.3
Q ss_pred CccEEEECCCc-chHHHHHhhhc-CCeEEEEcCC
Q 009241 47 YYDYIVIGGGT-AGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 47 ~~DviVVGsG~-aG~~aA~~La~-G~~VlvlEkG 78 (539)
...++|||+|- +|..+|..|.+ |.+|.++.|.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46799999996 69999999999 9999999885
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=79.38 E-value=1.7 Score=43.54 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~ 81 (539)
..-|+|||.|..|+.+|..|+. |. ++.|+|.....
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve 60 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVE 60 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence 3469999999999999999999 96 89999987643
No 406
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=79.36 E-value=1.8 Score=45.56 Aligned_cols=31 Identities=19% Similarity=0.368 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|+|||+|.+|+=+|..|++ +.+|.++.++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 69999999999999999999 99999999875
No 407
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=79.34 E-value=1.8 Score=45.97 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.5
Q ss_pred cEEEECCCcchHHHHHh---hhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAAS---LSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~---La~-G~~VlvlEkG~~ 80 (539)
.++|||+|..|+-.|.. |.+ |.+|.|+|+++.
T Consensus 189 ~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~ 224 (486)
T TIGR01423 189 RVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNM 224 (486)
T ss_pred eEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCc
Confidence 59999999999988864 445 899999999875
No 408
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=79.31 E-value=1.8 Score=43.80 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=28.8
Q ss_pred cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~ 79 (539)
+++|||+|..|.++|..||+ | .+|++..|..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 59999999999999999999 7 8999999975
No 409
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=79.02 E-value=1.8 Score=44.27 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.9
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
--|+|||.|..|..+|..|.. |.+|+++|..+.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~ 229 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPI 229 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChh
Confidence 369999999999999999999 999999998763
No 410
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=78.82 E-value=1.9 Score=42.09 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=28.6
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
-.|+|||+|.+|.++|..|++ |. +|.|+.|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 469999999999999999999 86 799998864
No 411
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=78.70 E-value=2 Score=36.98 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=28.3
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence 7999999999999999999 86 8999988764
No 412
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=78.51 E-value=2.1 Score=42.95 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||+|.-|+.+|..|+. |. ++.|++....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~V 59 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYV 59 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCcc
Confidence 4569999999999999999999 96 8999999754
No 413
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.35 E-value=2.2 Score=38.31 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=28.1
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 34 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7999999999999999999 96 6999998754
No 414
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=78.02 E-value=2.1 Score=43.08 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=28.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+.|||+|..|++.|.-||+ |..|+.++..+
T Consensus 3 I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 3 ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred eEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 7899999999999999999 99999999875
No 415
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.02 E-value=1.7 Score=42.46 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=28.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|.|||+|..|...|..+++ |.+|+++|..+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 48999999999999999999 999999987653
No 416
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=77.98 E-value=1.8 Score=42.79 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+.|+|+|+.|+..|++|++ |..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 7899999999999999999 988999888763
No 417
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=77.98 E-value=1.9 Score=43.11 Aligned_cols=30 Identities=33% Similarity=0.503 Sum_probs=27.8
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+.|||+|.-|...|..|++ |.+|.++.|.+
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 8899999999999999999 99999998853
No 418
>PLN02612 phytoene desaturase
Probab=77.31 E-value=4 Score=44.24 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=37.4
Q ss_pred hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCC
Q 009241 218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 281 (539)
Q Consensus 218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~ 281 (539)
+.+..++.|.+|+++++|++|..++++ ++++|.+. +|+. + .++.||+|+..
T Consensus 314 l~~~l~~~G~~I~l~~~V~~I~~~~~g----~v~~v~~~--~G~~--~-----~ad~VI~a~p~ 364 (567)
T PLN02612 314 IVDHFQSLGGEVRLNSRIKKIELNDDG----TVKHFLLT--NGSV--V-----EGDVYVSATPV 364 (567)
T ss_pred HHHHHHhcCCEEEeCCeeeEEEECCCC----cEEEEEEC--CCcE--E-----ECCEEEECCCH
Confidence 334444579999999999999987663 67777764 5643 3 37999999864
No 419
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.26 E-value=2.5 Score=41.53 Aligned_cols=31 Identities=29% Similarity=0.300 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-|.|||+|..|...|..|+. |.+|++.++.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 38999999999999999999 99999999865
No 420
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=77.25 E-value=1.9 Score=40.51 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CC---eEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NA---SVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~---~VlvlEkG~ 79 (539)
-++|+|+|.+|..+|..|.+ |. +|.|++|.+
T Consensus 27 rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 27 KIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred EEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 59999999999999999999 86 599999975
No 421
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.00 E-value=3.1 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=30.6
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~ 81 (539)
...|+|||.|..|+.+|..|+. |. ++.+++.....
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 4679999999999999999999 84 89999887654
No 422
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=76.46 E-value=2.4 Score=41.90 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=26.7
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERG 78 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG 78 (539)
|.|||+|..|+.+|..|+. |. +|+++|.-
T Consensus 4 V~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 4 ISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred EEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 8899999999999999999 76 89999983
No 423
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.42 E-value=2.2 Score=44.72 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=28.1
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
++|+|+|..|.++|..|++ |.+|++.|+..
T Consensus 8 v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 8 VLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred EEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 8999999999999999999 99999998764
No 424
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=76.40 E-value=2.3 Score=42.48 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=28.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-|.|||+|..|...|..|++ |.+|.++.+.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 39999999999999999999 99999998854
No 425
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=76.40 E-value=3.3 Score=41.89 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=29.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC---eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA---SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~---~VlvlEkG~~ 80 (539)
+.-|+|.|+|++|+.+|..|.+ |. +|.++++-+.
T Consensus 199 d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 199 DQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred ceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 4569999999999999999999 74 7999998764
No 426
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=76.40 E-value=2.2 Score=41.79 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=27.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCe-EEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~ 79 (539)
-++|+|+|.+|.++|..|++ |.+ |.|+.|..
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 58999999999999999999 975 99998864
No 427
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=76.23 E-value=2.5 Score=43.56 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|+|||.|..|..+|..|.. |.+|++.|+.+.
T Consensus 214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 59999999999999999999 999999998763
No 428
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=76.01 E-value=2.6 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=26.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
++|+|+|..+..+|.-++. |++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 5899999999999999999 999999987754
No 429
>PRK08328 hypothetical protein; Provisional
Probab=75.95 E-value=2.5 Score=39.88 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=29.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 3569999999999999999999 85 7888876653
No 430
>PLN02494 adenosylhomocysteinase
Probab=75.88 E-value=2.7 Score=43.73 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.0
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-.|+|||.|..|..+|.+|.. |.+|+++|+.+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 369999999999999999988 999999998763
No 431
>PRK07233 hypothetical protein; Provisional
Probab=75.62 E-value=4.8 Score=41.75 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=43.6
Q ss_pred CCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241 208 QNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 287 (539)
Q Consensus 208 ~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l 287 (539)
..|...-...+...+.+.|++|+++++|++|..+++ +++++.. ++.. + .++.||+|+.....+++
T Consensus 194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----~~~~~~~---~~~~--~-----~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----GVTGVEV---DGEE--E-----DFDAVISTAPPPILARL 258 (434)
T ss_pred CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----ceEEEEe---CCce--E-----ECCEEEECCCHHHHHhh
Confidence 444333233355566677899999999999998765 5665542 3432 3 37899999987555554
Q ss_pred H
Q 009241 288 L 288 (539)
Q Consensus 288 L 288 (539)
|
T Consensus 259 l 259 (434)
T PRK07233 259 V 259 (434)
T ss_pred c
Confidence 3
No 432
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=75.56 E-value=2.4 Score=41.42 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=29.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
--++|||.|..|..+|..|.. |.+|.+.+|.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 359999999999999999999 99999999864
No 433
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=75.06 E-value=2.7 Score=43.73 Aligned_cols=32 Identities=38% Similarity=0.775 Sum_probs=28.1
Q ss_pred cEEEECCCcchHHHHHhhhc---------------CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ---------------NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~---------------G~~VlvlEkG~~ 80 (539)
.++|||+|+.|+-.|..|++ +.+|.|+|+++.
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ 221 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE 221 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence 69999999999999988874 578999999875
No 434
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=74.93 E-value=2.6 Score=41.43 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|.|||+|..|...|..|+. |.+|.+.++.+
T Consensus 7 V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 8999999999999999999 99999999865
No 435
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.68 E-value=3.1 Score=41.21 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=28.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 48999999999999999999 99999998754
No 436
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.60 E-value=3 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=30.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
...|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4679999999999999999999 85 8999988754
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=74.59 E-value=3.4 Score=38.05 Aligned_cols=34 Identities=21% Similarity=0.464 Sum_probs=30.3
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
+.-|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~v 56 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHV 56 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEE
Confidence 4569999999999999999999 95 8999998764
No 438
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=74.39 E-value=2.9 Score=43.28 Aligned_cols=31 Identities=35% Similarity=0.422 Sum_probs=28.6
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||.|..|+..|..|++ |.+|+++++.+.
T Consensus 3 I~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 3 IAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 8899999999999999999 999999998653
No 439
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=74.28 E-value=3.3 Score=39.25 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=29.0
Q ss_pred CCccEEEECCCcchHHHHHhhhc-CC-----------eEEEEcCCCC
Q 009241 46 SYYDYIVIGGGTAGCPLAASLSQ-NA-----------SVLLLERGDS 80 (539)
Q Consensus 46 ~~~DviVVGsG~aG~~aA~~La~-G~-----------~VlvlEkG~~ 80 (539)
....|+|||+|..|+.++..||. |. ++.|++....
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~V 56 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTV 56 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEE
Confidence 45779999999999999999997 62 7788877654
No 440
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=74.21 E-value=2.5 Score=44.66 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.-.|+|+|+|++|+.++.-+.. |.+|.++|..+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3469999999999999999888 999999998753
No 441
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=74.14 E-value=3.6 Score=40.13 Aligned_cols=33 Identities=27% Similarity=0.679 Sum_probs=29.3
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPY 82 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~~ 82 (539)
|+|||+|.-|+.+|..|+. |. ++.+++.+....
T Consensus 2 VLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~ 36 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSY 36 (307)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecc
Confidence 8999999999999999999 95 899999886543
No 442
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=74.08 E-value=3 Score=39.26 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v 56 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV 56 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4569999999999999999999 85 8899887654
No 443
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=73.92 E-value=3.2 Score=44.76 Aligned_cols=37 Identities=24% Similarity=0.593 Sum_probs=31.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPYG 83 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~~~ 83 (539)
..-|+|||+|.-|+.+|..|+. |. ++.+++.+....+
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~S 376 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYS 376 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCC
Confidence 4569999999999999999999 95 8999999876443
No 444
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=73.90 E-value=2.7 Score=41.86 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=28.7
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|...|..|++ |.+|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 38999999999999999999 99999999864
No 445
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=73.84 E-value=2.9 Score=43.30 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=28.8
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|.|||.|..|+..|..|++ |.+|+++++.+.
T Consensus 6 I~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 6 ISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred EEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 8999999999999999999 999999998653
No 446
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=73.49 E-value=3.5 Score=38.30 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~v 63 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVV 63 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4569999999999999999999 86 6999998754
No 447
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=73.42 E-value=4 Score=37.65 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=30.5
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.--|-|||+|..|.-+|.-.+. |++|.|+++...
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 3459999999999999999999 999999998764
No 448
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.41 E-value=3.3 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=27.7
Q ss_pred cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~ 79 (539)
.|.|||+|..|+++|..|+. | ..|+++++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 38999999999999999999 8 4799999865
No 449
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=73.11 E-value=3.4 Score=40.57 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|-|||+|..|.-.|..+|. |++|.+.+..+
T Consensus 6 v~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 6 VAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 8899999999999999999 89999999874
No 450
>PRK08223 hypothetical protein; Validated
Probab=72.47 E-value=3.4 Score=40.08 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=30.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP 81 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~ 81 (539)
..-|+|||.|.-|+.+|..|+. |. ++.|++-....
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve 63 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFE 63 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 4679999999999999999999 85 89999887653
No 451
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=72.37 E-value=3.3 Score=39.05 Aligned_cols=31 Identities=19% Similarity=0.498 Sum_probs=27.8
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
|+|||+|..|+.++..|+. |. ++.|++....
T Consensus 2 VlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~V 34 (234)
T cd01484 2 VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTI 34 (234)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 7999999999999999999 85 8999988754
No 452
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=72.36 E-value=3.6 Score=44.54 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=31.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
+-.+||+|.|.-|-.+|.+|.+ |.+|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 4679999999999999999999 999999999753
No 453
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=72.32 E-value=3.3 Score=44.32 Aligned_cols=30 Identities=37% Similarity=0.554 Sum_probs=27.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
-++|+|+|.+|.++|+.|++ |.+|.++.|.
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 58999999999999999999 9999999774
No 454
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=71.59 E-value=3.8 Score=38.28 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEEC-CCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIG-GGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVG-sG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
+.||| +|..|.+.|..|++ |.+|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 78997 79999999999999 99999987764
No 455
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=71.38 E-value=3.2 Score=44.08 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=29.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|..|...|..|+. |.+|.+.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 38999999999999999999 999999998753
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=71.28 E-value=3.7 Score=40.38 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=29.4
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..++|||.|.+|..+|..|.. |.+|.+.++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 469999999999999999999 99999998874
No 457
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.10 E-value=4 Score=37.49 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=29.7
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
+.-|+|||.|..|+.+|..|+. |. ++.+++....
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v 54 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV 54 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence 3569999999999999999999 95 7999987654
No 458
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.83 E-value=3.7 Score=45.73 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=29.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|..|..+|..++. |++|.++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 38999999999999999999 999999998753
No 459
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=70.80 E-value=4 Score=42.52 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=29.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|+|||.|..|..+|.+|.. |.+|++.|+.+.
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~ 288 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDPI 288 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 59999999999999999999 999999998764
No 460
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=70.59 E-value=4.3 Score=40.13 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=27.5
Q ss_pred EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~ 80 (539)
|.|||+|..|.++|..|+. | ..|.|+++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 8999999999999999999 8 47999998653
No 461
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.51 E-value=4.1 Score=39.75 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=27.8
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
|+|||+|.-|+.++..|+. |. ++.|++-...
T Consensus 2 VlVVGaGGlG~eilknLal~Gvg~I~IvD~D~V 34 (291)
T cd01488 2 ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTI 34 (291)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEECCCEe
Confidence 8999999999999999999 85 8999987654
No 462
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=70.31 E-value=3.9 Score=43.00 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.3
Q ss_pred EEEECCCcchHHHHHhhhc-C--CeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~ 79 (539)
|.|||.|..|+.+|..||+ | .+|+.+|..+
T Consensus 4 I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 4 ICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 8999999999999999998 5 7899998765
No 463
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.10 E-value=3.9 Score=45.50 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|..|..+|..++. |..|.++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 49999999999999999999 999999998753
No 464
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=69.90 E-value=5.4 Score=30.92 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=26.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-C-CeEEEEcC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLER 77 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G-~~VlvlEk 77 (539)
-.++|+|+|..|..+|..|.+ + .+|.+.++
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 359999999999999999998 4 68889888
No 465
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=69.85 E-value=5 Score=39.73 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.5
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
.|.|||+|..|...|..|++ |.+|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 49999999999999999999 99999998864
No 466
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=69.72 E-value=4.4 Score=39.27 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-.++|+|+|..|..+|..|++ |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 359999999999999999999 99999998753
No 467
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=69.70 E-value=4.5 Score=37.73 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=25.7
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEc
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLE 76 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlE 76 (539)
--|+|||||..++-=+..|.+ |.+|.|+-
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 459999999999888888888 99999984
No 468
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=69.65 E-value=4.5 Score=37.14 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=29.4
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|.-|+.+|..|+. |. ++.+++-...
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~v 56 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTV 56 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 3559999999999999999999 96 7999987654
No 469
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.34 E-value=3.7 Score=43.06 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=29.2
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.|+|||+|..|..+|..|.+ |.+|+++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 48999999999999999999 999999998653
No 470
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=69.08 E-value=4.7 Score=39.31 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=27.8
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
--++|+|+|.++-++|+.|++ |. +|.|+.|..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 358999999999999999999 85 789998754
No 471
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.06 E-value=4.3 Score=40.05 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=28.2
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
|+|||+|..|+-+|..|+. |. ++.|++....
T Consensus 2 VlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCc
Confidence 8999999999999999999 95 8999988765
No 472
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=69.05 E-value=5.2 Score=36.48 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=27.7
Q ss_pred ccEEEECC-CcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGG-GTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGs-G~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-.++|+|+ |..|..+|..|++ |.+|.++.|..
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 35999996 9999999999999 99999997753
No 473
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=68.67 E-value=28 Score=35.41 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=27.7
Q ss_pred CCCCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241 43 KPVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS 80 (539)
Q Consensus 43 ~~~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~ 80 (539)
..+....++|||+|.+..+++..... +.+|++|-.-+.
T Consensus 174 ~~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepe 214 (659)
T KOG1346|consen 174 DLPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPE 214 (659)
T ss_pred cCcccCceeEEcCCchhhhcccccccCCCCceEEeeccCcc
Confidence 34556889999999987776655444 689999866553
No 474
>PRK08017 oxidoreductase; Provisional
Probab=68.59 E-value=4.8 Score=38.25 Aligned_cols=30 Identities=23% Similarity=0.231 Sum_probs=27.4
Q ss_pred EEEECC-CcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGG-GTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGs-G~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|+|+|+ |..|..+|.+|++ |.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 899998 9999999999999 99999998754
No 475
>PRK06153 hypothetical protein; Provisional
Probab=68.47 E-value=5.5 Score=40.30 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.1
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..||+ |. ++.|++....
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~V 211 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDF 211 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEe
Confidence 3579999999999999999999 85 8999998764
No 476
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=68.46 E-value=4.2 Score=43.31 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=28.9
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
|-|||+|..|...|..|+. |..|.+.|+.+.
T Consensus 10 V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 8999999999999999999 999999998763
No 477
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=68.44 E-value=4.8 Score=37.90 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 3569999999999999999999 85 8999988754
No 478
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=68.38 E-value=4.6 Score=39.15 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=27.9
Q ss_pred cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
.++|+|+|.++-++++.|++ |. +|.|+.|..
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 69999999999999999999 85 699998864
No 479
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=68.18 E-value=4.6 Score=39.30 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=28.5
Q ss_pred ccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~ 79 (539)
-.++|+|+|.+|..+|..|++ | .+|.|+.|..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 359999999999999999999 9 7999998864
No 480
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=68.02 E-value=2.9 Score=42.41 Aligned_cols=30 Identities=40% Similarity=0.775 Sum_probs=0.0
Q ss_pred EEEECCCcchHHHHHhhhc--C-------------CeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ--N-------------ASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~--G-------------~~VlvlEkG~ 79 (539)
++|||||+.|.-.|.+|++ . .+|+++|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
No 481
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=67.94 E-value=4.3 Score=42.85 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=29.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
..|+|+|+|..|+.++..|.. |.+|.++|..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 569999999999999999988 99999998875
No 482
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=67.74 E-value=4.9 Score=39.18 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=28.1
Q ss_pred ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
..++|||+|.+|-++|..|++ |. +|.|+.|..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 469999999999999999999 85 799997753
No 483
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.60 E-value=5.1 Score=41.96 Aligned_cols=32 Identities=25% Similarity=0.299 Sum_probs=29.0
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-++|+|.|.+|+++|..|++ |.+|.+.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 48999999999999999999 999999987654
No 484
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=67.57 E-value=4.9 Score=41.55 Aligned_cols=32 Identities=16% Similarity=0.467 Sum_probs=28.3
Q ss_pred EEEECCCcchHHHHHhhhc-CC------eEEEEcCCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA------SVLLLERGDSP 81 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~------~VlvlEkG~~~ 81 (539)
|+|||+|..|+-++..|+. |. ++.|++.....
T Consensus 2 VlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie 40 (435)
T cd01490 2 VFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIE 40 (435)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcc
Confidence 8999999999999999999 86 88998877653
No 485
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=67.38 E-value=4.8 Score=39.70 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.8
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
|.|||+|..|..+|..|+. |. .|+++|..+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999988 76 999999874
No 486
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.27 E-value=12 Score=39.42 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=41.7
Q ss_pred hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe---C-------CCCeEEEEeccCCCCeEEEcCCCccc-HHHHH
Q 009241 221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD---A-------TDAEHIAYLRNGPKNEIIVSAGALGS-PQLLM 289 (539)
Q Consensus 221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~---~-------~g~~~~~~~~~~~a~~VVlAaG~~~s-p~lLl 289 (539)
.+.+.|+++++++.+++|..+++ ++++|++.. . .|....+ .++.||+|.|.... ..++.
T Consensus 338 ~~~~~GV~i~~~~~~~~i~~~~g-----~v~~V~~~~~~~~~g~~~~~~g~~~~i-----~~D~VI~A~G~~p~~~~l~~ 407 (471)
T PRK12810 338 NAHEEGVEREFNVQTKEFEGENG-----KVTGVKVVRTELGEGDFEPVEGSEFVL-----PADLVLLAMGFTGPEAGLLA 407 (471)
T ss_pred HHHHcCCeEEeccCceEEEccCC-----EEEEEEEEEEEecCCCccccCCceEEE-----ECCEEEECcCcCCCchhhcc
Confidence 44567999999999999975444 898887642 1 1333444 48999999995443 33544
Q ss_pred hcC
Q 009241 290 LSG 292 (539)
Q Consensus 290 ~SG 292 (539)
..|
T Consensus 408 ~~g 410 (471)
T PRK12810 408 QFG 410 (471)
T ss_pred ccC
Confidence 333
No 487
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.15 E-value=4.6 Score=45.17 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|||+|..|..+|..++. |++|.++|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 49999999999999999999 999999998753
No 488
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=67.11 E-value=4.6 Score=39.30 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=27.7
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
|.|||.|..|.+.|..|++ |.+|+++++.+
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 8899999999999999999 99999998754
No 489
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=67.06 E-value=4.7 Score=31.80 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=27.0
Q ss_pred EEEECCCcchHHHHHhhhc-C---CeEEEE-cCCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-N---ASVLLL-ERGDS 80 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G---~~Vlvl-EkG~~ 80 (539)
+.|||+|..|.+.+..|.+ | .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 5789999999999999999 9 799976 88753
No 490
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=66.89 E-value=5.4 Score=41.97 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=29.1
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
-|.|+|.|.+|.++|..|.+ |.+|.+.|+.+.
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 49999999999999999999 999999998753
No 491
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=66.72 E-value=5.1 Score=40.45 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=25.3
Q ss_pred cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
.|+|+|+|+.|+.++.-+.. |. +|+++|+.+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 49999999999999666655 74 7888877653
No 492
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=66.46 E-value=5 Score=42.64 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=28.6
Q ss_pred cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~ 79 (539)
-|.|||+|..|...|..|+. |.+|.|.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 38999999999999999999 99999999865
No 493
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=66.16 E-value=6.1 Score=38.21 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=26.3
Q ss_pred EEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
|||||+|..|.-++.-|.+ |. |+.|++=..
T Consensus 77 VVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred EEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 8999999999999999999 85 888887554
No 494
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=66.05 E-value=5.7 Score=40.55 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
..-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v 170 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVV 170 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEe
Confidence 4569999999999999999999 86 8999988754
No 495
>PRK06223 malate dehydrogenase; Reviewed
Probab=65.65 E-value=5.9 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=27.4
Q ss_pred cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241 49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD 79 (539)
Q Consensus 49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~ 79 (539)
-|.|||+|..|..+|..++. |. .|.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 48999999999999999998 75 899999843
No 496
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.47 E-value=6.9 Score=37.84 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.1
Q ss_pred cEEEECCC---cchHHHHHhhhc-CCeEEEEcCC
Q 009241 49 DYIVIGGG---TAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 49 DviVVGsG---~aG~~aA~~La~-G~~VlvlEkG 78 (539)
=+||.|++ ..|..+|.+|++ |.+|++..+.
T Consensus 9 ~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 9 RGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 38899987 689999999999 9999998764
No 497
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=65.37 E-value=6 Score=36.28 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=26.3
Q ss_pred EEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241 50 YIVIGGGTAGCPLAASLSQ-NASVLLLERG 78 (539)
Q Consensus 50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG 78 (539)
+.|+|+|..|...|.++++ |..|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 7899999999999999999 9999997443
No 498
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=65.35 E-value=5.8 Score=35.68 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.8
Q ss_pred CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~ 80 (539)
.-.|.|||.|..|..+|.+|.. |.+|+..++-..
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 4569999999999999999999 999999998764
No 499
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.17 E-value=5.6 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=30.0
Q ss_pred CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241 47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS 80 (539)
Q Consensus 47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~ 80 (539)
+.-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~v 63 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTV 63 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence 4569999999999999999999 85 8999988764
No 500
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.82 E-value=16 Score=37.13 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=36.2
Q ss_pred CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCc
Q 009241 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGAL 282 (539)
Q Consensus 223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~ 282 (539)
.+.++.++.+++|..+...++| + .-+.++. ..|+..+++ .+.||||||.=
T Consensus 289 ~~~~v~l~~~~ev~~~~~~G~g----~-~~l~~~~~~~~~~~t~~-----~D~vIlATGY~ 339 (436)
T COG3486 289 RKPDVRLLSLSEVQSVEPAGDG----R-YRLTLRHHETGELETVE-----TDAVILATGYR 339 (436)
T ss_pred CCCCeeeccccceeeeecCCCc----e-EEEEEeeccCCCceEEE-----eeEEEEecccc
Confidence 3678999999999999988764 4 3344443 245555554 69999999964
Done!