Query 009242
Match_columns 539
No_of_seqs 225 out of 1723
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 22:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 1E-109 3E-114 882.7 61.4 518 22-539 22-539 (539)
2 PLN02991 oxidoreductase 100.0 3E-108 7E-113 867.7 60.6 516 22-538 21-537 (543)
3 PLN02354 copper ion binding / 100.0 4E-107 9E-112 864.8 59.6 515 23-538 21-545 (552)
4 PLN02792 oxidoreductase 100.0 6E-106 1E-110 851.9 59.4 514 23-538 11-530 (536)
5 PLN00044 multi-copper oxidase- 100.0 1E-105 2E-110 853.1 58.7 517 22-539 20-562 (596)
6 PLN02168 copper ion binding / 100.0 2E-105 4E-110 848.6 59.6 509 25-533 22-543 (545)
7 KOG1263 Multicopper oxidases [ 100.0 3.3E-98 7E-103 786.5 58.2 515 22-537 21-561 (563)
8 TIGR03389 laccase laccase, pla 100.0 1.3E-97 3E-102 798.5 58.5 496 27-531 1-539 (539)
9 PLN02191 L-ascorbate oxidase 100.0 4.3E-95 9E-100 778.4 56.5 496 23-536 17-566 (574)
10 PLN02604 oxidoreductase 100.0 2.8E-94 6E-99 774.0 59.4 498 22-536 17-566 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 6.3E-94 1.4E-98 769.3 56.2 486 29-532 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.8E-91 3.9E-96 748.0 54.3 476 30-516 9-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 3E-78 6.5E-83 645.0 50.3 425 30-512 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 3.1E-78 6.7E-83 640.6 45.8 411 29-512 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2.3E-76 5E-81 621.3 44.8 400 31-514 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 6.5E-60 1.4E-64 499.2 43.9 410 32-513 35-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 6.1E-49 1.3E-53 392.6 26.9 262 24-298 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 9E-36 1.9E-40 254.5 11.7 115 35-149 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 4.5E-30 9.8E-35 228.3 12.1 108 406-513 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.6E-25 3.5E-30 203.4 14.6 136 161-296 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 8E-18 1.7E-22 149.2 11.6 102 44-147 37-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.4E-15 3E-20 152.5 23.2 242 191-513 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.7 5.1E-16 1.1E-20 167.0 11.9 112 28-147 471-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 1E-13 2.3E-18 118.6 11.8 108 9-133 6-121 (135)
25 PRK10965 multicopper oxidase; 99.5 2.5E-12 5.4E-17 137.5 21.3 247 29-280 179-509 (523)
26 TIGR03389 laccase laccase, pla 99.4 1.7E-11 3.8E-16 132.5 23.5 231 49-281 167-507 (539)
27 PLN02835 oxidoreductase 99.4 1E-11 2.2E-16 133.3 21.1 248 29-280 160-498 (539)
28 PRK10883 FtsI repressor; Provi 99.4 1.9E-11 4.2E-16 129.5 18.6 234 30-281 180-455 (471)
29 PLN02354 copper ion binding / 99.3 3.3E-10 7.1E-15 122.0 19.7 228 49-279 190-504 (552)
30 TIGR03388 ascorbase L-ascorbat 99.2 2.2E-10 4.7E-15 123.9 17.1 219 60-280 203-510 (541)
31 PLN02604 oxidoreductase 99.2 4E-10 8.7E-15 122.3 18.9 217 60-280 224-533 (566)
32 PLN02168 copper ion binding / 99.2 1.7E-09 3.7E-14 116.0 22.1 243 49-296 189-518 (545)
33 COG2132 SufI Putative multicop 99.2 3.6E-10 7.7E-15 120.2 16.8 226 45-280 186-435 (451)
34 PLN02991 oxidoreductase 99.2 1.6E-09 3.5E-14 116.0 20.6 228 48-279 190-496 (543)
35 TIGR03390 ascorbOXfungal L-asc 99.2 8.8E-10 1.9E-14 119.0 18.2 229 49-280 172-518 (538)
36 PLN02792 oxidoreductase 99.2 6.8E-09 1.5E-13 111.4 23.7 226 48-279 179-489 (536)
37 PLN02191 L-ascorbate oxidase 99.0 1.1E-08 2.4E-13 111.0 19.0 225 53-280 219-533 (574)
38 PF07731 Cu-oxidase_2: Multico 98.9 7.8E-09 1.7E-13 91.6 11.2 76 203-280 35-121 (138)
39 PLN00044 multi-copper oxidase- 98.9 2.4E-07 5.1E-12 100.2 21.6 235 192-492 49-291 (596)
40 PF07732 Cu-oxidase_3: Multico 98.8 1.6E-08 3.6E-13 86.4 7.2 90 411-514 26-116 (117)
41 PRK02710 plastocyanin; Provisi 98.7 2.6E-07 5.6E-12 79.4 11.8 74 59-147 46-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.5 1.6E-07 3.5E-12 78.7 5.8 71 59-146 34-104 (104)
43 KOG1263 Multicopper oxidases [ 98.5 1.7E-05 3.7E-10 85.1 20.9 226 192-496 48-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 2.6E-06 5.6E-11 70.7 8.6 81 59-147 16-99 (99)
45 PF00127 Copper-bind: Copper b 98.2 4E-06 8.6E-11 69.6 6.0 82 59-147 16-99 (99)
46 PF00394 Cu-oxidase: Multicopp 98.1 1.1E-05 2.3E-10 73.3 8.1 94 409-513 58-157 (159)
47 TIGR03095 rusti_cyanin rusticy 98.1 2E-05 4.3E-10 70.1 8.7 90 411-512 52-148 (148)
48 PRK02888 nitrous-oxide reducta 98.0 2.1E-05 4.5E-10 84.2 10.1 100 39-148 532-634 (635)
49 TIGR02657 amicyanin amicyanin. 98.0 2.6E-05 5.7E-10 62.3 8.0 74 59-147 10-83 (83)
50 PF06525 SoxE: Sulfocyanin (So 97.9 0.00022 4.8E-09 65.1 12.1 100 50-150 75-189 (196)
51 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00042 9.2E-09 61.9 13.1 96 50-149 74-187 (195)
52 COG3794 PetE Plastocyanin [Ene 97.6 0.00027 5.9E-09 60.5 8.4 75 60-148 54-128 (128)
53 TIGR02656 cyanin_plasto plasto 97.6 0.00024 5.2E-09 58.8 7.8 83 411-512 17-99 (99)
54 TIGR03096 nitroso_cyanin nitro 97.6 0.00026 5.7E-09 61.1 8.0 59 412-497 62-120 (135)
55 TIGR02375 pseudoazurin pseudoa 97.6 0.00042 9.2E-09 58.8 8.9 75 59-149 14-89 (116)
56 TIGR03102 halo_cynanin halocya 97.2 0.0018 3.8E-08 54.9 8.4 73 59-147 41-115 (115)
57 PF00127 Copper-bind: Copper b 97.0 0.0061 1.3E-07 50.4 9.3 83 410-512 16-99 (99)
58 PF13473 Cupredoxin_1: Cupredo 96.9 0.0032 6.8E-08 52.6 7.3 62 412-502 36-97 (104)
59 PRK02710 plastocyanin; Provisi 96.0 0.033 7.2E-07 47.7 7.8 72 412-512 48-119 (119)
60 PRK02888 nitrous-oxide reducta 95.9 0.033 7.1E-07 60.2 8.9 75 412-513 556-634 (635)
61 TIGR02375 pseudoazurin pseudoa 95.6 0.079 1.7E-06 45.0 8.3 40 475-518 54-93 (116)
62 TIGR02657 amicyanin amicyanin. 95.6 0.082 1.8E-06 42.0 8.0 72 412-512 12-83 (83)
63 PF00116 COX2: Cytochrome C ox 94.8 0.19 4.1E-06 43.1 8.4 74 59-146 45-119 (120)
64 PRK10378 inactive ferrous ion 94.1 0.56 1.2E-05 48.1 11.4 77 56-149 40-118 (375)
65 TIGR02695 azurin azurin. Azuri 93.8 0.37 8.1E-06 41.0 7.9 86 59-145 15-124 (125)
66 TIGR02866 CoxB cytochrome c ox 93.5 0.65 1.4E-05 43.7 10.1 77 59-149 116-193 (201)
67 COG4454 Uncharacterized copper 93.3 0.26 5.6E-06 43.4 6.4 93 413-512 65-157 (158)
68 PF00116 COX2: Cytochrome C ox 93.0 1.4 2.9E-05 37.8 10.4 76 409-512 44-120 (120)
69 TIGR03102 halo_cynanin halocya 92.9 0.77 1.7E-05 38.9 8.6 73 412-512 43-115 (115)
70 COG4454 Uncharacterized copper 92.9 1.2 2.6E-05 39.3 9.8 89 56-148 59-158 (158)
71 COG3794 PetE Plastocyanin [Ene 92.1 0.82 1.8E-05 39.4 7.8 74 412-513 55-128 (128)
72 TIGR02866 CoxB cytochrome c ox 90.7 1.2 2.7E-05 41.8 8.3 78 411-516 117-195 (201)
73 COG1622 CyoA Heme/copper-type 89.7 1.5 3.2E-05 42.6 8.0 78 59-150 136-214 (247)
74 COG1622 CyoA Heme/copper-type 89.1 2 4.3E-05 41.7 8.3 79 410-516 136-215 (247)
75 PF06525 SoxE: Sulfocyanin (So 87.4 11 0.00024 34.9 11.6 97 411-514 86-188 (196)
76 COG4263 NosZ Nitrous oxide red 85.6 1.1 2.5E-05 46.1 4.6 78 60-147 558-636 (637)
77 PF12690 BsuPI: Intracellular 84.4 11 0.00025 29.7 9.0 65 212-277 4-82 (82)
78 TIGR02695 azurin azurin. Azuri 82.0 9.1 0.0002 32.7 7.9 76 203-278 17-111 (125)
79 TIGR03079 CH4_NH3mon_ox_B meth 79.8 20 0.00043 36.4 10.6 17 104-120 337-353 (399)
80 TIGR03094 sulfo_cyanin sulfocy 75.9 26 0.00057 31.9 9.3 96 411-513 85-186 (195)
81 COG2967 ApaG Uncharacterized p 72.3 4.2 9E-05 34.1 3.1 55 71-125 33-95 (126)
82 PTZ00047 cytochrome c oxidase 71.6 23 0.00051 31.8 7.9 78 411-516 73-151 (162)
83 TIGR01433 CyoA cytochrome o ub 70.2 15 0.00033 35.1 7.0 77 412-516 140-217 (226)
84 MTH00140 COX2 cytochrome c oxi 69.0 23 0.0005 34.0 8.0 79 410-516 139-218 (228)
85 PF04744 Monooxygenase_B: Mono 68.2 16 0.00034 37.2 6.7 69 46-120 249-334 (381)
86 MTH00047 COX2 cytochrome c oxi 67.3 45 0.00098 31.1 9.3 76 412-515 117-193 (194)
87 PRK10378 inactive ferrous ion 65.9 24 0.00051 36.5 7.7 70 193-278 33-104 (375)
88 PF05506 DUF756: Domain of unk 63.2 55 0.0012 26.1 8.0 64 58-129 7-73 (89)
89 MTH00140 COX2 cytochrome c oxi 62.2 1.5E+02 0.0033 28.4 12.7 77 59-149 139-216 (228)
90 TIGR01432 QOXA cytochrome aa3 62.0 29 0.00063 33.0 7.2 77 412-516 131-208 (217)
91 PF05938 Self-incomp_S1: Plant 60.2 52 0.0011 27.3 7.7 70 71-149 2-71 (110)
92 PF10633 NPCBM_assoc: NPCBM-as 56.2 67 0.0015 24.7 7.2 64 206-278 1-74 (78)
93 PF07705 CARDB: CARDB; InterP 54.5 1.1E+02 0.0023 24.3 9.5 65 205-278 14-82 (101)
94 PF01835 A2M_N: MG2 domain; I 53.7 45 0.00098 26.9 6.2 70 206-279 11-85 (99)
95 PF04151 PPC: Bacterial pre-pe 51.7 85 0.0018 23.5 7.0 64 203-278 6-69 (70)
96 MTH00098 COX2 cytochrome c oxi 49.7 80 0.0017 30.3 8.0 78 411-516 140-218 (227)
97 PF12690 BsuPI: Intracellular 49.2 71 0.0015 25.2 6.3 56 61-127 17-79 (82)
98 PRK05461 apaG CO2+/MG2+ efflux 48.9 21 0.00045 30.9 3.4 44 71-116 34-85 (127)
99 MTH00129 COX2 cytochrome c oxi 48.8 68 0.0015 30.8 7.4 79 410-516 139-218 (230)
100 MTH00008 COX2 cytochrome c oxi 47.0 92 0.002 29.9 7.9 78 411-516 140-218 (228)
101 PRK10525 cytochrome o ubiquino 47.0 56 0.0012 32.9 6.7 77 412-516 152-230 (315)
102 MTH00023 COX2 cytochrome c oxi 45.1 1.1E+02 0.0024 29.6 8.2 79 410-516 150-229 (240)
103 MTH00185 COX2 cytochrome c oxi 45.1 1.1E+02 0.0023 29.4 8.1 79 410-516 139-218 (230)
104 PRK13254 cytochrome c-type bio 42.8 40 0.00086 30.0 4.3 74 23-103 27-103 (148)
105 MTH00139 COX2 cytochrome c oxi 41.3 95 0.0021 29.7 7.1 79 410-516 139-218 (226)
106 TIGR01433 CyoA cytochrome o ub 39.8 75 0.0016 30.4 6.1 59 203-280 140-198 (226)
107 PF14344 DUF4397: Domain of un 39.8 2.2E+02 0.0049 23.7 10.5 21 213-233 3-24 (122)
108 MTH00117 COX2 cytochrome c oxi 39.8 1.4E+02 0.003 28.6 7.9 79 410-516 139-218 (227)
109 MTH00038 COX2 cytochrome c oxi 39.2 1.4E+02 0.0031 28.6 7.9 78 411-516 140-218 (229)
110 MTH00047 COX2 cytochrome c oxi 38.9 3.3E+02 0.0071 25.4 13.5 76 60-149 116-192 (194)
111 MTH00051 COX2 cytochrome c oxi 38.4 1.5E+02 0.0032 28.6 7.8 79 410-516 143-222 (234)
112 COG4633 Plastocyanin domain co 37.2 2.1E+02 0.0045 27.2 8.1 88 43-151 80-172 (272)
113 PF11614 FixG_C: IG-like fold 36.9 1.3E+02 0.0028 25.2 6.6 49 211-267 34-83 (118)
114 MTH00129 COX2 cytochrome c oxi 36.7 3.9E+02 0.0084 25.6 12.0 75 60-148 140-215 (230)
115 MTH00080 COX2 cytochrome c oxi 35.5 1.4E+02 0.0031 28.7 7.2 78 411-516 143-221 (231)
116 MTH00027 COX2 cytochrome c oxi 34.8 1.3E+02 0.0029 29.5 7.0 78 411-516 174-252 (262)
117 TIGR01432 QOXA cytochrome aa3 34.7 94 0.002 29.5 5.9 58 203-279 131-188 (217)
118 MTH00076 COX2 cytochrome c oxi 34.6 1.7E+02 0.0036 28.1 7.6 78 411-516 140-218 (228)
119 PF14326 DUF4384: Domain of un 34.4 2.2E+02 0.0048 22.2 8.3 24 206-229 3-26 (83)
120 PF14524 Wzt_C: Wzt C-terminal 33.9 1.5E+02 0.0033 25.1 6.8 82 195-279 20-107 (142)
121 PF07691 PA14: PA14 domain; I 33.9 2.4E+02 0.0051 24.1 8.1 61 203-268 53-120 (145)
122 PF14392 zf-CCHC_4: Zinc knuck 33.7 61 0.0013 22.7 3.3 42 462-503 3-45 (49)
123 MTH00154 COX2 cytochrome c oxi 33.7 2.1E+02 0.0046 27.4 8.1 78 411-516 140-218 (227)
124 MTH00008 COX2 cytochrome c oxi 33.2 1.3E+02 0.0029 28.7 6.7 58 203-279 141-198 (228)
125 PF04379 DUF525: Protein of un 32.2 1E+02 0.0022 24.8 4.8 49 211-262 15-67 (90)
126 PTZ00047 cytochrome c oxidase 31.5 2.1E+02 0.0045 25.9 7.0 59 203-280 74-132 (162)
127 PF15415 DUF4622: Protein of u 30.3 2.8E+02 0.0061 26.6 7.9 42 203-245 95-137 (310)
128 COG1188 Ribosome-associated he 29.9 37 0.00081 27.8 1.9 29 51-79 36-64 (100)
129 COG3354 FlaG Putative archaeal 28.9 3.8E+02 0.0082 23.6 7.8 81 192-277 51-140 (154)
130 PF10989 DUF2808: Protein of u 28.2 68 0.0015 28.3 3.5 29 104-132 96-127 (146)
131 MTH00168 COX2 cytochrome c oxi 27.8 2.3E+02 0.005 27.1 7.3 79 410-516 139-218 (225)
132 smart00758 PA14 domain in bact 26.1 4E+02 0.0088 22.5 8.2 61 203-268 51-112 (136)
133 PRK05461 apaG CO2+/MG2+ efflux 26.1 1.8E+02 0.004 25.1 5.6 49 211-262 32-84 (127)
134 PF10989 DUF2808: Protein of u 26.0 78 0.0017 27.9 3.5 27 472-498 98-128 (146)
135 PRK10525 cytochrome o ubiquino 26.0 1.3E+02 0.0029 30.3 5.5 59 203-280 152-210 (315)
136 PF14478 DUF4430: Domain of un 25.8 41 0.00088 25.3 1.4 24 192-215 41-68 (68)
137 cd00916 Npc2_like Niemann-Pick 25.7 2.8E+02 0.006 23.6 6.7 16 104-119 76-91 (123)
138 KOG1554 COP9 signalosome, subu 25.3 49 0.0011 32.3 2.1 9 125-133 134-142 (347)
139 COG1470 Predicted membrane pro 24.8 6.9E+02 0.015 26.7 10.3 73 203-282 390-470 (513)
140 MTH00098 COX2 cytochrome c oxi 23.6 2.3E+02 0.005 27.1 6.4 58 203-279 141-198 (227)
141 PRK13202 ureB urease subunit b 22.8 1.2E+02 0.0025 25.1 3.5 58 61-118 12-83 (104)
142 PF03100 CcmE: CcmE; InterPro 22.3 31 0.00067 29.9 0.1 75 23-103 26-103 (131)
143 MTH00154 COX2 cytochrome c oxi 22.2 3.1E+02 0.0068 26.2 7.0 59 203-280 141-199 (227)
144 COG4263 NosZ Nitrous oxide red 21.5 2.5E+02 0.0055 29.6 6.4 37 471-507 594-634 (637)
145 MTH00051 COX2 cytochrome c oxi 20.9 2.9E+02 0.0062 26.6 6.5 58 203-279 145-202 (234)
146 PF11142 DUF2917: Protein of u 20.9 2.7E+02 0.0057 20.7 4.9 29 204-237 2-30 (63)
147 COG4704 Uncharacterized protei 20.5 1.2E+02 0.0027 26.2 3.4 38 1-38 1-38 (151)
148 cd00918 Der-p2_like Several gr 20.3 5E+02 0.011 22.0 7.2 62 59-120 19-88 (120)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.5e-109 Score=882.68 Aligned_cols=518 Identities=84% Similarity=1.402 Sum_probs=427.8
Q ss_pred hcccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCc
Q 009242 22 LVKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVL 101 (539)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~ 101 (539)
+..+.+++++|+|+|++..+++||+++++|+|||++|||+||+++||+|+|+|+|+|+++++|||||++|..++++||++
T Consensus 22 ~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~ 101 (539)
T PLN02835 22 LVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVL 101 (539)
T ss_pred hhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCc
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhh
Q 009242 102 GTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQT 181 (539)
Q Consensus 102 ~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~ 181 (539)
+.||+|.||++|+|+|++++++||||||||...|+.+||+|+|||++++.++.++...|+|++++++||+++....+...
T Consensus 102 ~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~ 181 (539)
T PLN02835 102 GTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR 181 (539)
T ss_pred cCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH
Confidence 88999999999999999867899999999999999999999999987655556666679999999999999987666555
Q ss_pred hcCCCCCCCCceEEECCCCCceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEE
Q 009242 182 LDSGKSLPFPDGVLINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVS 261 (539)
Q Consensus 182 ~~~~~~~~~~~~~liNG~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~d 261 (539)
+..+...+.++.+||||+..+.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..+|+|.|++|||||
T Consensus 182 ~~~g~~~~~~d~~liNG~~~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRyd 261 (539)
T PLN02835 182 LDSGKVLPFPDGVLINGQTQSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVA 261 (539)
T ss_pred hhcCCCCCCCceEEEccccCceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEE
Confidence 55666667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCcceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCcc
Q 009242 262 VLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFH 341 (539)
Q Consensus 262 v~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 341 (539)
|+|++++++|+|+|++...+........|||+|.++..+.+.++|..|..+...+...+......+.+....+.+.....
T Consensus 262 vlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~ 341 (539)
T PLN02835 262 VLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFH 341 (539)
T ss_pred EEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCcccc
Confidence 99999988899999986544334567899999988643332233432321111122222222222333233333322221
Q ss_pred ccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEE
Q 009242 342 YGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYI 421 (539)
Q Consensus 342 ~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v 421 (539)
......++++.+.......++...|+|||++|..|+.|+|++.+.+.++.++.......+.+...+.++.++.++.|++|
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~V 421 (539)
T PLN02835 342 YGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFL 421 (539)
T ss_pred ccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEE
Confidence 22223455555543222235667899999999999999988766666666664433333333334567889999999999
Q ss_pred EEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhh
Q 009242 422 EVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQ 501 (539)
Q Consensus 422 e~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~ 501 (539)
||+|+|.+...||||||||+||||++|.|.|++.....+|+.+|++|||+.||++||++|||+|||||.|+|||||++|+
T Consensus 422 eivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~ 501 (539)
T PLN02835 422 EVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQ 501 (539)
T ss_pred EEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhh
Confidence 99999998889999999999999999999998655556889999999999999999999999999999999999999999
Q ss_pred hcccEEEEEEecCcccCcccCCCCCccccccccCCCCC
Q 009242 502 YLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVGHHP 539 (539)
Q Consensus 502 d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~~ 539 (539)
..||+.+|+|.++.+..+..++||++++.||.-++.+|
T Consensus 502 ~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~~~~ 539 (539)
T PLN02835 502 YLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIGRHP 539 (539)
T ss_pred hcccEEEEEEccCCCccccccCCCccccccccCccCCC
Confidence 99999999999987777678899999999999888776
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=3.4e-108 Score=867.65 Aligned_cols=516 Identities=61% Similarity=1.098 Sum_probs=428.6
Q ss_pred hcccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCc
Q 009242 22 LVKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVL 101 (539)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~ 101 (539)
+..+.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||++
T Consensus 21 ~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~ 100 (543)
T PLN02991 21 FVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVY 100 (543)
T ss_pred hhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCC
Confidence 45567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhh
Q 009242 102 GTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQT 181 (539)
Q Consensus 102 ~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~ 181 (539)
+.||+|.||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.++.|+...++|++++|+||+++....+...
T Consensus 101 ~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~ 180 (543)
T PLN02991 101 GTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQ 180 (543)
T ss_pred CCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHH
Confidence 88999999999999999866899999999999999999999999998766666666668899999999999877666555
Q ss_pred hcCCCCCCCCceEEECCCCC-ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceE
Q 009242 182 LDSGKSLPFPDGVLINGQGH-TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSV 260 (539)
Q Consensus 182 ~~~~~~~~~~~~~liNG~~~-~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~ 260 (539)
+..+...+.++.+||||+.. +.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..++++.|++||||
T Consensus 181 ~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRy 260 (543)
T PLN02991 181 LDNGGKLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSY 260 (543)
T ss_pred hhcCCCCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEE
Confidence 55555566889999999975 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCc
Q 009242 261 SVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSF 340 (539)
Q Consensus 261 dv~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~ 340 (539)
||+|++++++|+|||++...+........|||+|+++......+.|..|. +..++.++....+..+.+....+.|...+
T Consensus 261 dvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~ 339 (543)
T PLN02991 261 SVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSY 339 (543)
T ss_pred EEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCccc
Confidence 99999999899999999865544456789999999875322223333331 12222222222223333322233333322
Q ss_pred cccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcE
Q 009242 341 HYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEY 420 (539)
Q Consensus 341 ~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ 420 (539)
.+.....++++.+.......++...|+||+.+|..|++|+|++.+.+++++|+.+..++.+.++.....+.++.++.+++
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 419 (543)
T PLN02991 340 HYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAF 419 (543)
T ss_pred cccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCE
Confidence 22223344555444322222456789999999999999999887777778876553444444333445678889999999
Q ss_pred EEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhh
Q 009242 421 IEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWER 500 (539)
Q Consensus 421 ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H 500 (539)
|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++|||+|||||.|+|||||..|
T Consensus 420 VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h 499 (543)
T PLN02991 420 VEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWER 499 (543)
T ss_pred EEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCcccc
Confidence 99999999888999999999999999999999876556799999999999999999999999999999999999999999
Q ss_pred hhcccEEEEEEecCcccCcccCCCCCccccccccCCCC
Q 009242 501 QYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVGHH 538 (539)
Q Consensus 501 ~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (539)
+..||+++++|.++.+..+.+++||+++++||.-++.+
T Consensus 500 ~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~~ 537 (543)
T PLN02991 500 QYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGHH 537 (543)
T ss_pred ccccEEEEEEecCCCCccccccCCCcccCccccCCCCC
Confidence 99999999999998888777899999999999877755
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=4.4e-107 Score=864.76 Aligned_cols=515 Identities=60% Similarity=1.090 Sum_probs=419.4
Q ss_pred cccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcc
Q 009242 23 VKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLG 102 (539)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~ 102 (539)
..+.+.+++|+|+|++...++||+++++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||+|+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~ 100 (552)
T PLN02354 21 VRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG 100 (552)
T ss_pred hhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhh
Q 009242 103 TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTL 182 (539)
Q Consensus 103 ~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 182 (539)
.||+|.||++|+|+|++.+++||||||||...|+.+||+|+|||++++..+.+|+..++|++|+++||+++....+...+
T Consensus 101 TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 180 (552)
T PLN02354 101 TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFL 180 (552)
T ss_pred CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHH
Confidence 89999999999999997668999999999999999999999999998766677766789999999999999876666655
Q ss_pred cCCCCCCCCceEEECCCC-------CceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEc
Q 009242 183 DSGKSLPFPDGVLINGQG-------HTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVH 255 (539)
Q Consensus 183 ~~~~~~~~~~~~liNG~~-------~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~ 255 (539)
..+...+.++.+||||+. .+.++|++|++|||||||+|....+.|+|+||+|+||++||++++|..+++|.|+
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~ 260 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVH 260 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEc
Confidence 555545568999999996 3689999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCcceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCC
Q 009242 256 VGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPN 335 (539)
Q Consensus 256 pg~R~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~ 335 (539)
+||||||+|++++++|+|+|++...+........|||+|+++....+.+.|..+. +..++...+...+.++.+....|.
T Consensus 261 ~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~~~~p~ 339 (552)
T PLN02354 261 VGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPV-GWAWSLNQFRSFRWNLTASAARPN 339 (552)
T ss_pred cCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCc-ccccchhhhhhhhhcccccccCCC
Confidence 9999999999998899999999865444556789999998865432222332221 111122223333333333222232
Q ss_pred CCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCC-CccccCCCCCC-CC-CCCCCcceeE
Q 009242 336 PQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIP-GIFSVNSIQSV-PS-GGASSVATSV 412 (539)
Q Consensus 336 p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~-~~~~~~~~~~~-p~-~~~~~~~~~~ 412 (539)
+.....+.....++++.+.......++...|+|||.+|..|++|+|.+.+.++. +.++.+..+.. |. ......++.+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v 419 (552)
T PLN02354 340 PQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNV 419 (552)
T ss_pred CCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCee
Confidence 322111112334555555443222356778999999999999999877654332 44442211111 11 1123456788
Q ss_pred EEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeE
Q 009242 413 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 492 (539)
Q Consensus 413 ~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (539)
+.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++|||+|||||.|+
T Consensus 420 ~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~ 499 (552)
T PLN02354 420 LNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWN 499 (552)
T ss_pred EEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEe
Confidence 99999999999999998889999999999999999999998765567899999999999999999999999999999999
Q ss_pred EEeechhhhhcccEEEEEEecCcccCcccCCCCCccccccccCCCC
Q 009242 493 MRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVGHH 538 (539)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (539)
|||||+.|+..||++.+.|.++.+..++.+++|++.+.|++.++..
T Consensus 500 ~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~ 545 (552)
T PLN02354 500 IRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLP 545 (552)
T ss_pred eeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCCC
Confidence 9999999999999999999988776656678999999999988754
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.2e-106 Score=851.90 Aligned_cols=514 Identities=57% Similarity=1.059 Sum_probs=424.6
Q ss_pred cccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcc
Q 009242 23 VKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLG 102 (539)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~ 102 (539)
+++++ +++|+|+|++...++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||+++
T Consensus 11 ~~~~~-~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~ 89 (536)
T PLN02792 11 VKADD-TLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG 89 (536)
T ss_pred hhcCC-eEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC
Confidence 55444 46999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhh
Q 009242 103 TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTL 182 (539)
Q Consensus 103 ~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 182 (539)
.||+|.||++|+|+|++++++||||||||...|+.+||+|+|||.+++.++.+++..++|++++++||+++....+...+
T Consensus 90 tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~ 169 (536)
T PLN02792 90 TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKIL 169 (536)
T ss_pred CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHh
Confidence 89999999999999998778999999999999999999999999886555566666788999999999998876666555
Q ss_pred cCCCCCC-CCceEEECCCCC---ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCc
Q 009242 183 DSGKSLP-FPDGVLINGQGH---TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQ 258 (539)
Q Consensus 183 ~~~~~~~-~~~~~liNG~~~---~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~ 258 (539)
..+...+ .++.+||||+.. +.++|++|++|||||||+|....+.|+|+||+|+|||+||++++|..+++|.|+|||
T Consensus 170 ~~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~Gq 249 (536)
T PLN02792 170 DGGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQ 249 (536)
T ss_pred hccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCc
Confidence 5554333 789999999974 579999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCC-CcccccccccccccccccccCCCCCCCC
Q 009242 259 SVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGP-TYEIHWSMKQARTFRWNLTANAARPNPQ 337 (539)
Q Consensus 259 R~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~~~~~~p~p~ 337 (539)
||||+|++++.+|+|+|++...+.+....+.|||+|+++..... +.|..| ..+..++......++..+.+..+.+.|.
T Consensus 250 RydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~ 328 (536)
T PLN02792 250 TYSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQ 328 (536)
T ss_pred eEEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCC
Confidence 99999999988899999998755444567889999988643211 112222 1223333333333333333322333444
Q ss_pred CCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCC-CCCCCcceeEEEec
Q 009242 338 GSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPS-GGASSVATSVMQVN 416 (539)
Q Consensus 338 ~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~ 416 (539)
....+.....++++.+.......++...|+|||.+|..|++|+|++.++++.++++.+..+..|. .+....++.++.++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~ 408 (536)
T PLN02792 329 GSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAH 408 (536)
T ss_pred cccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcC
Confidence 33333333445565554432223456789999999999999999887777777776543333332 22234468899999
Q ss_pred CCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEee
Q 009242 417 LHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSA 496 (539)
Q Consensus 417 ~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCH 496 (539)
.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++||||.||++||++|||+|||||.|+||||
T Consensus 409 ~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh 488 (536)
T PLN02792 409 HNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQ 488 (536)
T ss_pred CCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEc
Confidence 99999999999888899999999999999999999988666789999999999999999999999999999999999999
Q ss_pred chhhhhcccEEEEEEecCcccCcccCCCCCccccccccCCCC
Q 009242 497 IWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVGHH 538 (539)
Q Consensus 497 il~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (539)
+..|+..||+++|.|.++.+..+++++||++++.||..++.+
T Consensus 489 ~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~~ 530 (536)
T PLN02792 489 FWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNKN 530 (536)
T ss_pred chhccccceEEEEEEccCCCccccccCCCcccCccccccCCC
Confidence 999999999999999998887777899999999999877654
No 5
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1e-105 Score=853.07 Aligned_cols=517 Identities=52% Similarity=0.912 Sum_probs=420.6
Q ss_pred hcccCCCeEEEEEEEEEEeecCCC--eeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCC
Q 009242 22 LVKADDPYRFYTWTVTSGTLSPLG--VPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG 99 (539)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~G--~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG 99 (539)
-+.|++++++|+|+|++..+++|| ..+++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||
T Consensus 20 ~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DG 99 (596)
T PLN00044 20 PAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDG 99 (596)
T ss_pred ccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccC
Confidence 455778899999999999999999 556899999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCC-CceeEEeeeecccchHHH
Q 009242 100 VLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQD-GDFTLLIGDWFKTNHKIL 178 (539)
Q Consensus 100 ~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~-~e~~l~l~d~~~~~~~~~ 178 (539)
+++.||+|.||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.||...+ +|.+|+|+||++++...+
T Consensus 100 v~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~ 179 (596)
T PLN00044 100 VGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL 179 (596)
T ss_pred CCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH
Confidence 9878999999999999999877899999999999999999999999999876666665433 799999999999887666
Q ss_pred HhhhcCCCCCCCCceEEECCCCC--------------ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc
Q 009242 179 RQTLDSGKSLPFPDGVLINGQGH--------------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT 244 (539)
Q Consensus 179 ~~~~~~~~~~~~~~~~liNG~~~--------------~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~ 244 (539)
...+..+.....++.++|||++. +.++|++|++|||||||++....+.|+|+||+|+||++||.++
T Consensus 180 ~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v 259 (596)
T PLN00044 180 RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYT 259 (596)
T ss_pred HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCccc
Confidence 55555554455678999999753 2689999999999999999999999999999999999999999
Q ss_pred cceeeceEEEcCCceEEEEEEeCCCCc-ceEEEEeeecc----cCccceEEEEEecCCCCCCCCCCCCCC--Cccccccc
Q 009242 245 IQNIYDSLDVHVGQSVSVLVTLNQPPK-DYYIVASTRFT----KNVLTATAILHYTNSHSPASGPLPTGP--TYEIHWSM 317 (539)
Q Consensus 245 ~p~~~d~l~l~pg~R~dv~v~~~~~~g-~~~~~~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~~~ 317 (539)
+|..+|+|.|++||||||+|++++.++ +|||++...+. .+...+.|||+|.++......++|..| ..+...+.
T Consensus 260 ~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~ 339 (596)
T PLN00044 260 SQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSI 339 (596)
T ss_pred CceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhh
Confidence 999999999999999999999998765 89999864321 245678899999886542222233323 22333333
Q ss_pred ccccccccccccCCCCCCCCCCccccccccceEEEEccc-ccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCC
Q 009242 318 KQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANS-APLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNS 396 (539)
Q Consensus 318 ~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~-~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~ 396 (539)
++...++....+....+.|.....+......+.+.+... .....++..|+|||.+|..|++|+|++.+++++++++.+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~f 419 (596)
T PLN00044 340 NQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDF 419 (596)
T ss_pred hhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCC
Confidence 344444433332222333332222222222233322211 1112356889999999999999999888777788877654
Q ss_pred CCCCCCCCCCCcceeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCC
Q 009242 397 IQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQ 476 (539)
Q Consensus 397 ~~~~p~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~ 476 (539)
....| .......+.++.++.+++|||+|+|.....||||||||+|+||++|.|.|++.....+|+.||++|||+.||++
T Consensus 420 p~~pp-~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~ 498 (596)
T PLN00044 420 PNHPM-NRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPG 498 (596)
T ss_pred CCCCC-ccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCC
Confidence 33222 22234578899999999999999998778999999999999999999999987767899999999999999999
Q ss_pred cEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCccc-CcccCCCCCccccccccCCCCC
Q 009242 477 SWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHS-LANEYDIPSNILVCGKAVGHHP 539 (539)
Q Consensus 477 g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~~~~ 539 (539)
||++|||++||||.|+||||++.|++.||++.|.|.++.+. .+++++||++++.||..+++++
T Consensus 499 gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~ 562 (596)
T PLN00044 499 AWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQK 562 (596)
T ss_pred CeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCC
Confidence 99999999999999999999999999999999999998764 5578999999999998877653
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.8e-105 Score=848.56 Aligned_cols=509 Identities=51% Similarity=0.917 Sum_probs=407.1
Q ss_pred cCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccC
Q 009242 25 ADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTN 104 (539)
Q Consensus 25 ~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~ 104 (539)
|.+++++|+|+|++...++||+++++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||+|+.|
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQ 101 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTN 101 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhhcC
Q 009242 105 CPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDS 184 (539)
Q Consensus 105 ~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~ 184 (539)
|+|.||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.++.++...++|++|+++||++.+...+...+..
T Consensus 102 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 181 (545)
T PLN02168 102 CPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDN 181 (545)
T ss_pred CCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhc
Confidence 99999999999999866899999999999999999999999999876666666678999999999999875555444444
Q ss_pred CCCCCCCceEEECCCC--CceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEE
Q 009242 185 GKSLPFPDGVLINGQG--HTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSV 262 (539)
Q Consensus 185 ~~~~~~~~~~liNG~~--~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv 262 (539)
+...+.++.+||||+. .+.++|++|++|||||||+|....+.|+|+||+|+||++||.+++|..+++|.|++||||||
T Consensus 182 g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydv 261 (545)
T PLN02168 182 GHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSV 261 (545)
T ss_pred CCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEE
Confidence 4445578999999996 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC-c---ceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCCC-cccccccccccccccccccCCCCCCCC
Q 009242 263 LVTLNQPP-K---DYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQ 337 (539)
Q Consensus 263 ~v~~~~~~-g---~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~ 337 (539)
+|++++++ | +|+|++..........+.|||+|+++......++|..|. .+...+.+....++..+.+....+.|.
T Consensus 262 lv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~ 341 (545)
T PLN02168 262 LVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQ 341 (545)
T ss_pred EEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCc
Confidence 99998644 4 899999875544556788999998764422223333221 111111122222222233222223333
Q ss_pred CCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecC
Q 009242 338 GSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNL 417 (539)
Q Consensus 338 ~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 417 (539)
.++.+.....++++.+.......++...|+|||.+|..|++|+|++.++++++.+..+..+..|.+.....++.++.++.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~ 421 (545)
T PLN02168 342 GSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHY 421 (545)
T ss_pred ccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecC
Confidence 22222223345555544321123456789999999999999998766554444443332222222222233578899999
Q ss_pred CcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeec
Q 009242 418 HEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAI 497 (539)
Q Consensus 418 g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHi 497 (539)
|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.||++||++|||+|||||.|+|||||
T Consensus 422 ~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi 501 (545)
T PLN02168 422 KDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQK 501 (545)
T ss_pred CCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecC
Confidence 99999999999888999999999999999999999876656799999999999999999999999999999999999999
Q ss_pred hhhhhcccEEEEEEe-----cCccc-CcccCCCCCccccccc
Q 009242 498 WERQYLGQQFYLKVW-----NAVHS-LANEYDIPSNILVCGK 533 (539)
Q Consensus 498 l~H~d~GMm~~~~V~-----~~~~~-~~~~~~~p~~~~~c~~ 533 (539)
..|++.||++.++|. +|++. .+.+++||+++++||.
T Consensus 502 ~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 502 AEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred cccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 999999999999885 33333 3346789999999984
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-98 Score=786.47 Aligned_cols=515 Identities=46% Similarity=0.802 Sum_probs=452.3
Q ss_pred hcccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCc
Q 009242 22 LVKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVL 101 (539)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~ 101 (539)
..+|.++.+.|+++++...+.++|.++.++++||++|||+|+|++||+|.|+|.|+++++++|||||++|..++|+|| +
T Consensus 21 ~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~ 99 (563)
T KOG1263|consen 21 FSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-V 99 (563)
T ss_pred HhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-C
Confidence 478899999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred cc-CCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeeccc-chHHHH
Q 009242 102 GT-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKT-NHKILR 179 (539)
Q Consensus 102 ~~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~~~ 179 (539)
.+ ||||.||++|+|+|+++++.||||||+|...|+++|++|+|||.++...+.|++..++|++|+++||+.+ ....+.
T Consensus 100 ~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~ 179 (563)
T KOG1263|consen 100 YITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLK 179 (563)
T ss_pred ccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHH
Confidence 55 9999999999999999889999999999999999999999999999887888888999999999999996 777777
Q ss_pred hhhcCCCCCCC-CceEEECCCCC------ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceE
Q 009242 180 QTLDSGKSLPF-PDGVLINGQGH------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSL 252 (539)
Q Consensus 180 ~~~~~~~~~~~-~~~~liNG~~~------~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l 252 (539)
..++.+...+. +|..+|||+.. +.++|++|++|||||+|+|....+.|+|+||+|+||++||.+++|..+++|
T Consensus 180 ~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l 259 (563)
T KOG1263|consen 180 NFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSL 259 (563)
T ss_pred HhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceE
Confidence 77766655544 89999999984 478999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEEeCCCCcceEEEEeeecccC----ccceEEEEEecCCCCCCCCCCC---CC-CCcccccccccccccc
Q 009242 253 DVHVGQSVSVLVTLNQPPKDYYIVASTRFTKN----VLTATAILHYTNSHSPASGPLP---TG-PTYEIHWSMKQARTFR 324 (539)
Q Consensus 253 ~l~pg~R~dv~v~~~~~~g~~~~~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p---~~-p~~~~~~~~~~~~~l~ 324 (539)
.|.||||++|+|++++.+++|+|.+.+.+... .....++++|.++..+.+...| .. |..+..++..+.+.++
T Consensus 260 ~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r 339 (563)
T KOG1263|consen 260 DIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIR 339 (563)
T ss_pred EEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhccc
Confidence 99999999999999999999999999877655 6778899999985433322222 22 2345567778888888
Q ss_pred cccccCCCCCCCCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCC-C-
Q 009242 325 WNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVP-S- 402 (539)
Q Consensus 325 ~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p-~- 402 (539)
..+....+.|+|.+...+......+.+.+.......+++..++||+.+|..|++|.+++.++...+.+..++.+..| .
T Consensus 340 ~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~ 419 (563)
T KOG1263|consen 340 SLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIK 419 (563)
T ss_pred ccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccc
Confidence 87777778888887766666666777777665545577899999999999999999998876554444444444444 2
Q ss_pred CC--CCCcceeEEEecCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCc--ccccccCCCCCCcceEEEeCC
Q 009242 403 GG--ASSVATSVMQVNLHEYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAA--EKRRTYNLADTLTRHTAQVYP 475 (539)
Q Consensus 403 ~~--~~~~~~~~~~~~~g~~ve~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~--~~~~~~~~~~p~~rDTv~vpp 475 (539)
.+ +.+.++.++.++.++.|||+++|.+ ...|||||||++|+|+++|.|+|++ +....+|+.+|+.||||.|||
T Consensus 420 ~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~p 499 (563)
T KOG1263|consen 420 FDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPP 499 (563)
T ss_pred cCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCC
Confidence 11 2378999999999999999999987 6679999999999999999999998 444679999999999999999
Q ss_pred CcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccCcccCCCCCccccccccCCC
Q 009242 476 QSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCGKAVGH 537 (539)
Q Consensus 476 ~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 537 (539)
+||++|||.|||||+|+||||+++|...||+++|.|.++++..+.+.+||++.++||.-++.
T Consensus 500 ggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~ 561 (563)
T KOG1263|consen 500 GGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGI 561 (563)
T ss_pred CCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCc
Confidence 99999999999999999999999999999999999999999887788999999999987764
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.3e-97 Score=798.45 Aligned_cols=496 Identities=28% Similarity=0.511 Sum_probs=384.6
Q ss_pred CCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc-CC
Q 009242 27 DPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT-NC 105 (539)
Q Consensus 27 ~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-~~ 105 (539)
+++|+|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+|++ ||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHH-hhhcC
Q 009242 106 PIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILR-QTLDS 184 (539)
Q Consensus 106 ~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~ 184 (539)
+|.||++|+|+|++++++||||||||.+.+. +||+|+|||++++..+.++...|+|++|+++||+++....+. .....
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 159 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQT 159 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhc
Confidence 9999999999999866899999999998665 599999999997766666666789999999999998755432 33334
Q ss_pred CCCCCCCceEEECCCCCc----------eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEE
Q 009242 185 GKSLPFPDGVLINGQGHT----------TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDV 254 (539)
Q Consensus 185 ~~~~~~~~~~liNG~~~~----------~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l 254 (539)
+.....+++++|||+..+ .++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|
T Consensus 160 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i 239 (539)
T TIGR03389 160 GGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVI 239 (539)
T ss_pred CCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEe
Confidence 444456789999999642 6999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEeCCCCcceEEEEeeeccc----CccceEEEEEecCCCCCCCCCCCCCCC-ccccccccccccccccccc
Q 009242 255 HVGQSVSVLVTLNQPPKDYYIVASTRFTK----NVLTATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTA 329 (539)
Q Consensus 255 ~pg~R~dv~v~~~~~~g~~~~~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~ 329 (539)
++||||||+|++++.+|+|+|++....+. ......|||+|+++.....+..+..+. .+..........+.....+
T Consensus 240 ~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~ 319 (539)
T TIGR03389 240 GPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSA 319 (539)
T ss_pred cCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccccccc
Confidence 99999999999998889999999765332 235688999998864321111111111 1100000000011100000
Q ss_pred CCCCCCCCCCccccccccceEEEEccccc----------c-cCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCC
Q 009242 330 NAARPNPQGSFHYGKINTTRTIVLANSAP----------L-INGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQ 398 (539)
Q Consensus 330 ~~~~p~p~~~~~~~~~~~~r~~~l~~~~~----------~-~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~ 398 (539)
..+...| ...++++.+..... . .+....|+||+++|..|+.|+|.+.+.++.+.+..+...
T Consensus 320 ~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~ 391 (539)
T TIGR03389 320 QYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPA 391 (539)
T ss_pred CCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCcc
Confidence 0000001 12333332222100 0 123467999999999899998765544433332211111
Q ss_pred CCCC-----------CCCCCcceeEEEecCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCccc-ccccCCC
Q 009242 399 SVPS-----------GGASSVATSVMQVNLHEYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLA 463 (539)
Q Consensus 399 ~~p~-----------~~~~~~~~~~~~~~~g~~ve~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~ 463 (539)
..|. +-..+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|+.
T Consensus 392 ~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~ 471 (539)
T TIGR03389 392 NPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLV 471 (539)
T ss_pred CCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccC
Confidence 0010 001233678899999999999999975 448999999999999999999887532 2368999
Q ss_pred CCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccCcccCCCCCccccc
Q 009242 464 DTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVC 531 (539)
Q Consensus 464 ~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 531 (539)
+|++|||+.||++||++|||++||||.|+|||||++|+..||+++|.+.+.+...+..+++|+++|.|
T Consensus 472 nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 472 DPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999877655445688999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.3e-95 Score=778.38 Aligned_cols=496 Identities=31% Similarity=0.549 Sum_probs=378.0
Q ss_pred cccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCCCCCCCc
Q 009242 23 VKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNSWQDGVL 101 (539)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~ 101 (539)
..+.+++++|+|+|++..+++||+++++++|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||+|
T Consensus 17 ~~~~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~ 96 (574)
T PLN02191 17 HTASAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA 96 (574)
T ss_pred HhhccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC
Confidence 334568999999999999999999999999999999999999999999999999997 7899999999999999999999
Q ss_pred cc-CCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHh
Q 009242 102 GT-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQ 180 (539)
Q Consensus 102 ~~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~ 180 (539)
++ ||+|.||++|+|+|++ +++||||||||...|+.+||+|+|||+++...+.++ ..|+|++|+++||++........
T Consensus 97 gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~ 174 (574)
T PLN02191 97 GVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQEL 174 (574)
T ss_pred ccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHH
Confidence 99 9999999999999997 689999999999999999999999998754332222 34899999999999975432221
Q ss_pred hhcC--CCCCCCCceEEECCCC---------------------------Cc-eEEEecCCEEEEEEEecCCCCeeeEEEe
Q 009242 181 TLDS--GKSLPFPDGVLINGQG---------------------------HT-TFNGDQGKTYMFRISNVGLSTSFNFRIQ 230 (539)
Q Consensus 181 ~~~~--~~~~~~~~~~liNG~~---------------------------~~-~l~v~~G~~~rlRliN~~~~~~~~~~l~ 230 (539)
.+.. ......++.+||||++ .+ .++|++|++|||||||+|....+.|+|+
T Consensus 175 ~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~id 254 (574)
T PLN02191 175 GLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQ 254 (574)
T ss_pred hhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEEC
Confidence 1111 1112456788888864 22 5899999999999999999999999999
Q ss_pred CCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCC-cceEEEEeeeccc-CccceEEEEEecCCCCCC--CCCCC
Q 009242 231 GHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP-KDYYIVASTRFTK-NVLTATAILHYTNSHSPA--SGPLP 306 (539)
Q Consensus 231 gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~-g~~~~~~~~~~~~-~~~~~~ail~y~~~~~~~--~~~~p 306 (539)
||+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++||||+...... ......|||+|.+..... +.+.|
T Consensus 255 gH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~ 334 (574)
T PLN02191 255 GHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPP 334 (574)
T ss_pred CCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999876 5899998654322 123457999998754321 11111
Q ss_pred CCCC-cccccccccccccccccccCCCCCCCCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccc
Q 009242 307 TGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADY 385 (539)
Q Consensus 307 ~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~ 385 (539)
..|. .+... .......+......+.+. ....++++.+.... ...+...|+||+.+|..|..|+|++.+
T Consensus 335 ~~p~~~~~~~----~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~ 403 (574)
T PLN02191 335 VTPRWDDFER----SKNFSKKIFSAMGSPSPP------KKYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVK 403 (574)
T ss_pred CCCcccccch----hhcccccccccccCCCCC------CcccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHh
Confidence 1110 00000 001111111000011111 11134444443321 123456899999999989999988765
Q ss_pred cCCCCccccCCCCCC-CC---------CCCCCcceeEEEecCCcEEEEEEEcCC------CCCCceeecCCceEEEeecc
Q 009242 386 FNIPGIFSVNSIQSV-PS---------GGASSVATSVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGS 449 (539)
Q Consensus 386 ~~~~~~~~~~~~~~~-p~---------~~~~~~~~~~~~~~~g~~ve~~i~N~~------~~~HP~HlHG~~F~Vl~~~~ 449 (539)
.+.++.++....... +. ....+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~ 483 (574)
T PLN02191 404 YNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGD 483 (574)
T ss_pred hccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecC
Confidence 544444332211100 00 011235677889999999999999975 67899999999999999999
Q ss_pred CcCCccc-ccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccCcccCCCCCcc
Q 009242 450 GQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNI 528 (539)
Q Consensus 450 g~~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~ 528 (539)
|.|++.. ...+|+.||++|||+.||++||++|||++||||.|+|||||++|+..||+++|. +.++ ..+++|+++
T Consensus 484 g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~----~~~~~p~~~ 558 (574)
T PLN02191 484 GKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLN----RIGKIPDEA 558 (574)
T ss_pred CCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChh----hccCCCcch
Confidence 9998632 246899999999999999999999999999999999999999999999999994 3333 245588999
Q ss_pred ccccccCC
Q 009242 529 LVCGKAVG 536 (539)
Q Consensus 529 ~~c~~~~~ 536 (539)
+.|+.+++
T Consensus 559 ~~C~~~~~ 566 (574)
T PLN02191 559 LGCGLTKQ 566 (574)
T ss_pred hhhhcccc
Confidence 99987654
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.8e-94 Score=774.04 Aligned_cols=498 Identities=29% Similarity=0.544 Sum_probs=386.0
Q ss_pred hcccCCCeEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCC
Q 009242 22 LVKADDPYRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGV 100 (539)
Q Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~ 100 (539)
+..+.+.+++|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|++ .++++|||||+++.+++++||+
T Consensus 17 ~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~ 96 (566)
T PLN02604 17 FPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT 96 (566)
T ss_pred hhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC
Confidence 466778999999999999999999999999999999999999999999999999998 5899999999999888999999
Q ss_pred ccc-CCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHH
Q 009242 101 LGT-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILR 179 (539)
Q Consensus 101 ~~~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~ 179 (539)
+++ ||+|.||++++|+|++ +++||||||||...|+.+||+|+|||++++.++.++ ..++|.+|+|+||+++...+..
T Consensus 97 ~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~ 174 (566)
T PLN02604 97 EGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQA 174 (566)
T ss_pred CccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHH
Confidence 998 9999999999999997 689999999999999999999999999876544455 3488999999999998764433
Q ss_pred hhhcCC--CCCCCCceEEECCCCC-------------------------ceEEEecCCEEEEEEEecCCCCeeeEEEeCC
Q 009242 180 QTLDSG--KSLPFPDGVLINGQGH-------------------------TTFNGDQGKTYMFRISNVGLSTSFNFRIQGH 232 (539)
Q Consensus 180 ~~~~~~--~~~~~~~~~liNG~~~-------------------------~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh 232 (539)
..+... ....+++..+|||++. +.++|++|++|||||||+|..+.+.|+|+||
T Consensus 175 ~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH 254 (566)
T PLN02604 175 LGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGH 254 (566)
T ss_pred HhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCC
Confidence 222211 1124578999998742 1588999999999999999999999999999
Q ss_pred eeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCc-ceEEEEeeeccc-CccceEEEEEecCCCCCCCCC--CCCC
Q 009242 233 TMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPK-DYYIVASTRFTK-NVLTATAILHYTNSHSPASGP--LPTG 308 (539)
Q Consensus 233 ~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g-~~~~~~~~~~~~-~~~~~~ail~y~~~~~~~~~~--~p~~ 308 (539)
+|+|||+||.+++|.+++.|.|++||||||+|++++++| +|||++...... +...+.|||+|++.......+ .+..
T Consensus 255 ~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~ 334 (566)
T PLN02604 255 NMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSG 334 (566)
T ss_pred EEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999998765 899998654322 346778999998643211111 1111
Q ss_pred CC-cccccccccccccccccccCCCCCCCCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccC
Q 009242 309 PT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFN 387 (539)
Q Consensus 309 p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~ 387 (539)
+. .+..........++. ....+. ......++++.+.......++...|+||+.+|..|+.|+|++.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~ 404 (566)
T PLN02604 335 PLWNDVEPRLNQSLAIKA----RHGYIH------PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKEN 404 (566)
T ss_pred Ccccccchhhcchhcccc----cccCcC------CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhc
Confidence 10 000000000000000 000000 0112345566553322222355789999999998889988776554
Q ss_pred CCCccccCCCCCC-----------CCCCCCCcceeEEEecCCcEEEEEEEcCC------CCCCceeecCCceEEEeeccC
Q 009242 388 IPGIFSVNSIQSV-----------PSGGASSVATSVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGSG 450 (539)
Q Consensus 388 ~~~~~~~~~~~~~-----------p~~~~~~~~~~~~~~~~g~~ve~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g 450 (539)
.+++++....... ..+...+.++.++.++.|++||++|+|.+ ...||||||||+||||++|.|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G 484 (566)
T PLN02604 405 LTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEG 484 (566)
T ss_pred CCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCC
Confidence 4555542211100 00112344677899999999999999975 457999999999999999999
Q ss_pred cCCccc-ccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccCcccCCCCCccc
Q 009242 451 QWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNIL 529 (539)
Q Consensus 451 ~~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~ 529 (539)
.|++.. ...+|+.+|++|||+.||++||++|||+|||||.|+|||||++|+..||+++|.+. ++ ..+++|.+++
T Consensus 485 ~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~----~~~~~p~~~~ 559 (566)
T PLN02604 485 KFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE----RVGKLPSSIM 559 (566)
T ss_pred CCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----hccCCCCCcC
Confidence 887543 34689999999999999999999999999999999999999999999999999754 32 3668999999
Q ss_pred cccccCC
Q 009242 530 VCGKAVG 536 (539)
Q Consensus 530 ~c~~~~~ 536 (539)
+|+.-+|
T Consensus 560 ~C~~~~~ 566 (566)
T PLN02604 560 GCGESKG 566 (566)
T ss_pred ccccCCC
Confidence 9987664
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=6.3e-94 Score=769.33 Aligned_cols=486 Identities=30% Similarity=0.585 Sum_probs=375.9
Q ss_pred eEEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCCCCCCCccc-CCc
Q 009242 29 YRFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNSWQDGVLGT-NCP 106 (539)
Q Consensus 29 ~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-~~~ 106 (539)
+|+|+|+|+++.+++||+.+.+++|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++++||++++ ||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 489999999999999999999999999999999999999999999999995 889999999999999999999998 999
Q ss_pred cCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhhcC-C
Q 009242 107 IPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDS-G 185 (539)
Q Consensus 107 i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~-~ 185 (539)
|.||++|+|+|++ +++||||||||...|+.+||+|+|||+++..++.++ ..|+|++|+|+||+++........+.. .
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999997 689999999999999999999999999876444444 248999999999999875433222221 1
Q ss_pred -CCCCCCceEEECCCCC--------------------------c-eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEE
Q 009242 186 -KSLPFPDGVLINGQGH--------------------------T-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLV 237 (539)
Q Consensus 186 -~~~~~~~~~liNG~~~--------------------------~-~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi 237 (539)
.....++.++|||++. + .++|++|++|||||||+|....+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 1224578999999842 1 48999999999999999999999999999999999
Q ss_pred EecCccccceeeceEEEcCCceEEEEEEeCCCC-cceEEEEeeecc-cCccceEEEEEecCCCCCCC--CCCCCCCC-cc
Q 009242 238 EVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP-KDYYIVASTRFT-KNVLTATAILHYTNSHSPAS--GPLPTGPT-YE 312 (539)
Q Consensus 238 a~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~-g~~~~~~~~~~~-~~~~~~~ail~y~~~~~~~~--~~~p~~p~-~~ 312 (539)
|+||.+++|..++.|.|+|||||||+|++++.+ |+|||++..... .....+.|||+|.+...... .+.+..|. .+
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~ 318 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDD 318 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999998766 489999875433 22345789999987543210 11111121 00
Q ss_pred cccccccccccccccccCCCCCCCCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCcc
Q 009242 313 IHWSMKQARTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIF 392 (539)
Q Consensus 313 ~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~ 392 (539)
.... ......+......+.+. ...++++.+.......++...|++|+.+|..|+.|+|.+...++.+++
T Consensus 319 ~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~ 387 (541)
T TIGR03388 319 FDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAF 387 (541)
T ss_pred cchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccc
Confidence 0000 00000000000011111 123455444332211245567999999999888998876654443333
Q ss_pred ccCCCCC----------CCCCCCCCcceeEEEecCCcEEEEEEEcCC------CCCCceeecCCceEEEeeccCcCCcc-
Q 009242 393 SVNSIQS----------VPSGGASSVATSVMQVNLHEYIEVVFQNNE------KTMQSWHLDGYDFWVVGYGSGQWAAE- 455 (539)
Q Consensus 393 ~~~~~~~----------~p~~~~~~~~~~~~~~~~g~~ve~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~- 455 (539)
+...... .+.....+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~ 467 (541)
T TIGR03388 388 DQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGV 467 (541)
T ss_pred cCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCccc
Confidence 3211100 011122345678899999999999999974 45799999999999999999888743
Q ss_pred cccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccCcccCCCCCcccccc
Q 009242 456 KRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSLANEYDIPSNILVCG 532 (539)
Q Consensus 456 ~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 532 (539)
....+|+.+|++|||+.||++||++|||++||||.|+|||||++|+..||+++|... ++ ..+++|+++++|+
T Consensus 468 ~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 468 DEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred CcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 234689999999999999999999999999999999999999999999999999654 32 3567999999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.8e-91 Score=748.01 Aligned_cols=476 Identities=24% Similarity=0.399 Sum_probs=365.8
Q ss_pred EEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCCCCCCCccc-CCcc
Q 009242 30 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNSWQDGVLGT-NCPI 107 (539)
Q Consensus 30 ~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-~~~i 107 (539)
-.|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|..++++||+|++ ||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 899999999999999999999999 9999
Q ss_pred CCCCeEEEEEEeC-CCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhhcCCC
Q 009242 108 PPNSNYTYKFQTK-DQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGK 186 (539)
Q Consensus 108 ~pG~~~~y~~~~~-~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~ 186 (539)
.||++|+|+|+++ +++||||||||...|+. ||+|+|||++++..+..+ |+|++|+|+||+++...++...+..+.
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~~~~~---d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPPPYKY---DDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCccCCCc---cCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999974 57999999999998876 599999999865444344 889999999999998766543322221
Q ss_pred --CCCCCceEEECCCC----------------CceEEEecCCEEEEEEEecCCCCeeeEEEeCCe-eEEEEecCccccce
Q 009242 187 --SLPFPDGVLINGQG----------------HTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHT-MKLVEVEGSHTIQN 247 (539)
Q Consensus 187 --~~~~~~~~liNG~~----------------~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~-~~via~DG~~~~p~ 247 (539)
....++.+||||+. .+.++|++|++|||||||+|....+.|+|+||+ |+|||+||++++|+
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 12456899999996 257999999999999999999999999999999 99999999999999
Q ss_pred eeceEEEcCCceEEEEEEeCCC-------CcceEEEEeeecccCccceEEEEEecCCCCCCCCCCCCCCCcccccccccc
Q 009242 248 IYDSLDVHVGQSVSVLVTLNQP-------PKDYYIVASTRFTKNVLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQA 320 (539)
Q Consensus 248 ~~d~l~l~pg~R~dv~v~~~~~-------~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~ 320 (539)
.+++|.|++||||||+|++++. +|+|||++.....++...+.|||+|.+......+..|..+..........+
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDW 324 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhh
Confidence 9999999999999999999864 489999987654444556789999986543221111111100000000001
Q ss_pred cccccccccCCCCCCCCCCccccccccceEEEEcccccc--cCCeEEEEEcCeeecC--CCCchhcccccCCCCccccCC
Q 009242 321 RTFRWNLTANAARPNPQGSFHYGKINTTRTIVLANSAPL--INGKLRYAVNGISYVN--SDTPLKLADYFNIPGIFSVNS 396 (539)
Q Consensus 321 ~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~--~~~~~~~~iNg~~f~~--p~~p~l~~~~~~~~~~~~~~~ 396 (539)
.+ ..+.+......+. ++ ....+++++.+...... .++...|+|||.+|.. +++|+|...+.+...... .
T Consensus 325 ~~--~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~-~- 397 (538)
T TIGR03390 325 LE--YELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATP-N- 397 (538)
T ss_pred hh--eeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCC-C-
Confidence 10 0111111100000 00 01235667666654321 2456789999999985 788988755432100000 0
Q ss_pred CCCCCCCCCCCcceeEEEecCCcEEEEEEEcCC--------CCCCceeecCCceEEEeeccCcCCccc-ccccCCCCCCc
Q 009242 397 IQSVPSGGASSVATSVMQVNLHEYIEVVFQNNE--------KTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLT 467 (539)
Q Consensus 397 ~~~~p~~~~~~~~~~~~~~~~g~~ve~~i~N~~--------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~ 467 (539)
.............+.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|++.. ...+++.+|++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~r 477 (538)
T TIGR03390 398 YTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVL 477 (538)
T ss_pred cccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCe
Confidence 000000001233566788999999999999974 578999999999999999999998543 23578889999
Q ss_pred ceEEEeC----------CCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcc
Q 009242 468 RHTAQVY----------PQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 468 rDTv~vp----------p~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 516 (539)
|||+.|| +++|++|||++||||.|+|||||.+|...||+++|.|.+.++
T Consensus 478 RDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 478 RDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred ecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 9999996 789999999999999999999999999999999999987654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3e-78 Score=644.97 Aligned_cols=425 Identities=22% Similarity=0.296 Sum_probs=322.1
Q ss_pred EEEEEEEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc-CCccC
Q 009242 30 RFYTWTVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT-NCPIP 108 (539)
Q Consensus 30 ~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-~~~i~ 108 (539)
++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++ ++.+||+|++ ||+|.
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILL--PFQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcC--CccccCCCcccccccC
Confidence 79999999999999999999999999999999999999999999999999999999999976 4679999999 99999
Q ss_pred CCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhhc-----
Q 009242 109 PNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLD----- 183 (539)
Q Consensus 109 pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----- 183 (539)
||++|+|+|++ .++||||||||...|+++||+|+|||++++.++..+ |+|++|+|+||++.....+...+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~---D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRA---DREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCC---CceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999997 579999999999999999999999999865555555 899999999999765433311110
Q ss_pred -----------------CCC---------C-------C------CCCceEEECCCCCc---eEEEecCCEEEEEEEecCC
Q 009242 184 -----------------SGK---------S-------L------PFPDGVLINGQGHT---TFNGDQGKTYMFRISNVGL 221 (539)
Q Consensus 184 -----------------~~~---------~-------~------~~~~~~liNG~~~~---~l~v~~G~~~rlRliN~~~ 221 (539)
.|. . . .....+||||+..+ .+.+++|++|||||||+|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~ 279 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGSA 279 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecCC
Confidence 010 0 0 01124899999854 5899999999999999999
Q ss_pred CCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeeecccCccceEEEEEecCCCCCC
Q 009242 222 STSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSHSPA 301 (539)
Q Consensus 222 ~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~ 301 (539)
.+.+.|+|+||+|+||++||++++|+.++++.|+|||||||+|+.+ ..|.|.|++.+... .....++|.+.+.....
T Consensus 280 ~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~~ 356 (587)
T TIGR01480 280 MTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTAP 356 (587)
T ss_pred CceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCCC
Confidence 9999999999999999999999999999999999999999999987 56899999875422 24566788876542111
Q ss_pred CCCCCCCCC---ccccc------------cccccccccc----------c---c--cc----------------CCCCC-
Q 009242 302 SGPLPTGPT---YEIHW------------SMKQARTFRW----------N---L--TA----------------NAARP- 334 (539)
Q Consensus 302 ~~~~p~~p~---~~~~~------------~~~~~~~l~~----------~---l--~~----------------~~~~p- 334 (539)
.++++..|. .+..- .......... + + .. ....+
T Consensus 357 ~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (587)
T TIGR01480 357 VPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPM 436 (587)
T ss_pred CCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCcc
Confidence 111211110 01000 0000000000 0 0 00 00000
Q ss_pred ----CCC--------CCcc----------ccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCcc
Q 009242 335 ----NPQ--------GSFH----------YGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIF 392 (539)
Q Consensus 335 ----~p~--------~~~~----------~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~ 392 (539)
.|. .... ......+|++.+.+... .....|+|||+.|..
T Consensus 437 ~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~--m~~~~wtiNG~~~~~----------------- 497 (587)
T TIGR01480 437 DRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN--MERFAWSFDGEAFGL----------------- 497 (587)
T ss_pred cccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC--CceeEEEECCccCCC-----------------
Confidence 000 0000 01123456665554321 235569999987632
Q ss_pred ccCCCCCCCCCCCCCcceeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEE
Q 009242 393 SVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQ 472 (539)
Q Consensus 393 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~ 472 (539)
...+.++.|+.|+|++.|.+.+.||||+||+.|+++..++ .+ +.++||+.
T Consensus 498 -----------------~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dTv~ 547 (587)
T TIGR01480 498 -----------------KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHTVD 547 (587)
T ss_pred -----------------CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCcee
Confidence 0125689999999999999999999999999999987532 11 35789999
Q ss_pred eCCCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEe
Q 009242 473 VYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 473 vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 512 (539)
|+|++++.++|+++|||.|+||||+++|++.|||..|+|.
T Consensus 548 V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 548 VPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 9999999999999999999999999999999999999883
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.1e-78 Score=640.63 Aligned_cols=411 Identities=18% Similarity=0.220 Sum_probs=305.9
Q ss_pred eEEEEEEEEEEeecCCC-eeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCcc
Q 009242 29 YRFYTWTVTSGTLSPLG-VPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI 107 (539)
Q Consensus 29 ~~~~~l~~~~~~~~~~G-~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i 107 (539)
...|+|++++...++++ ..+++|+|||++|||+||+++||+|+|+++|.|+++++|||||+++. +.+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCC
Confidence 44699999999999875 55579999999999999999999999999999999999999999875 4599998 7999
Q ss_pred CCCCeEEEEEEeCCCccceeEccCc----chhhccceeeEEEEecCCCCCCCCC--CCCCceeEEeeeecccchHHHHhh
Q 009242 108 PPNSNYTYKFQTKDQIGSYFYFPST----LMHRAAGGYGGINIYQRPRIPIPYP--IQDGDFTLLIGDWFKTNHKILRQT 181 (539)
Q Consensus 108 ~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~ 181 (539)
.||++|+|+|++++++||||||||. ..|+++||+|+|||++++..+.+++ ...+|++|+++||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999986568999999997 4899999999999999765433332 245699999999999876655332
Q ss_pred hcCC--CCCCCCceEEECCCCCceEEEecCCEEEEEEEecCCCCeeeEEE-eCCeeEEEEecCccc-cceeeceEEEcCC
Q 009242 182 LDSG--KSLPFPDGVLINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVG 257 (539)
Q Consensus 182 ~~~~--~~~~~~~~~liNG~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~d~l~l~pg 257 (539)
.+.. .....++.++|||+.+|.+.++ +++|||||||+|+.+.+.|++ +||+|+|||.||+++ +|..+++|.|+||
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lapG 279 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIYPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILMG 279 (523)
T ss_pred ccccccccCccCCeEEECCcccceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECcc
Confidence 2211 1234578999999999999886 579999999999999999998 799999999999986 7999999999999
Q ss_pred ceEEEEEEeCCCCcceEEEEeeecccC-----ccceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccCCC
Q 009242 258 QSVSVLVTLNQPPKDYYIVASTRFTKN-----VLTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAA 332 (539)
Q Consensus 258 ~R~dv~v~~~~~~g~~~~~~~~~~~~~-----~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~ 332 (539)
|||||+|+++ +.++|.+......... ......++++.........++|... ....+
T Consensus 280 eR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l------------------~~~~~ 340 (523)
T PRK10965 280 ERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL------------------ASLPA 340 (523)
T ss_pred ceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh------------------ccCCC
Confidence 9999999998 4678888875331110 1112345555433211111222210 00000
Q ss_pred CCCCCCCccccccccceEEEEcccc---------------------------------------ccc---CCe-----EE
Q 009242 333 RPNPQGSFHYGKINTTRTIVLANSA---------------------------------------PLI---NGK-----LR 365 (539)
Q Consensus 333 ~p~p~~~~~~~~~~~~r~~~l~~~~---------------------------------------~~~---~~~-----~~ 365 (539)
.+.+.. ...|++.|.+.. ... .+. ..
T Consensus 341 ~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (523)
T PRK10965 341 LPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHA 413 (523)
T ss_pred CCcccc-------cceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000 001111111000 000 000 12
Q ss_pred EEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEEEEEEEcCC-CCCCceeecCCceEE
Q 009242 366 YAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWV 444 (539)
Q Consensus 366 ~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~~i~N~~-~~~HP~HlHG~~F~V 444 (539)
|+|||+.|... . ..+.++.|++++|+|.|.+ .+.|||||||++|||
T Consensus 414 ~~ING~~~~~~-~--------------------------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~V 460 (523)
T PRK10965 414 NKINGKAFDMN-K--------------------------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRI 460 (523)
T ss_pred ccCCCeECCCC-C--------------------------------cceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEE
Confidence 58888887521 1 1246899999999999988 478999999999999
Q ss_pred EeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeC----CceeeEEEeechhhhhcccEEEEEEe
Q 009242 445 VGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLD----NQGMWNMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 445 l~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~ad----npG~w~~HCHil~H~d~GMm~~~~V~ 512 (539)
|++++.+. ...++.|||||.|++ +.++|+++++ ++|.||||||||+|||.|||..|+|.
T Consensus 461 l~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 461 LSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEecCCCC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 99976432 123468999999988 6777777665 56799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2.3e-76 Score=621.31 Aligned_cols=400 Identities=18% Similarity=0.203 Sum_probs=297.6
Q ss_pred EEEEEEEEEeecCC-CeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCC
Q 009242 31 FYTWTVTSGTLSPL-GVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPP 109 (539)
Q Consensus 31 ~~~l~~~~~~~~~~-G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~p 109 (539)
.++|++++...+++ |.++++|+|||++|||+||+++||+|+|+++|.|++++++||||+++... .+||++ ++|.|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999998887 57889999999999999999999999999999999999999999998654 466665 88999
Q ss_pred CCeEEEEEEeCCCccceeEccCcc----hhhccceeeEEEEecCCCCCCCCC--CCCCceeEEeeeecccchHHHHhhhc
Q 009242 110 NSNYTYKFQTKDQIGSYFYFPSTL----MHRAAGGYGGINIYQRPRIPIPYP--IQDGDFTLLIGDWFKTNHKILRQTLD 183 (539)
Q Consensus 110 G~~~~y~~~~~~~~Gt~wYH~H~~----~~~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~ 183 (539)
|++|+|+|++.+++||||||||.+ .|+++||+|+|||+++..++.+++ ...+|++|+++||+++..+..... .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 999999999866799999999976 599999999999998765443432 245599999999999765442211 1
Q ss_pred CCCCCCCCceEEECCCCCceEEEecCCEEEEEEEecCCCCeeeEEE-eCCeeEEEEecCccc-cceeeceEEEcCCceEE
Q 009242 184 SGKSLPFPDGVLINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRI-QGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVS 261 (539)
Q Consensus 184 ~~~~~~~~~~~liNG~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l-~gh~~~via~DG~~~-~p~~~d~l~l~pg~R~d 261 (539)
.......++.+||||+..|.++|++| +|||||||+|+.+.+.|+| +||+|+|||.||+++ +|..++++.|+||||||
T Consensus 202 ~~~~g~~gd~~lvNG~~~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~d 280 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQSPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERRE 280 (471)
T ss_pred cccCCccCCeeEECCccCCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeEE
Confidence 12223467899999999999999974 8999999999999999999 899999999997775 89999999999999999
Q ss_pred EEEEeCCCCcceEEEEeeecccC-cc----------ceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccC
Q 009242 262 VLVTLNQPPKDYYIVASTRFTKN-VL----------TATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTAN 330 (539)
Q Consensus 262 v~v~~~~~~g~~~~~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~ 330 (539)
|+|++++ .+.+.+++....... .. ....+++....... +. ....+...+...
T Consensus 281 vlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~~~~p~~l~~~ 343 (471)
T PRK10883 281 ILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL-----PL-----------VTDNLPMRLLPD 343 (471)
T ss_pred EEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccc-----cC-----------CCCcCChhhcCC
Confidence 9999973 556666653210000 00 00111121111000 00 000000011000
Q ss_pred CCCCCCCCCccccccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcce
Q 009242 331 AARPNPQGSFHYGKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVAT 410 (539)
Q Consensus 331 ~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 410 (539)
. +. .......+++.|.. ..|.|||+.|.....
T Consensus 344 ~--~~------~~~~~~~~~~~l~~--------~~~~INg~~~~~~~~-------------------------------- 375 (471)
T PRK10883 344 E--IM------EGSPIRSREISLGD--------DLPGINGALWDMNRI-------------------------------- 375 (471)
T ss_pred C--CC------CCCCcceEEEEecC--------CcCccCCcccCCCcc--------------------------------
Confidence 0 00 01111233444432 137899999853211
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce-
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG- 489 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG- 489 (539)
.+.++.|++++|.+.|. +.|||||||+.|||+++++.... ..+..|||||.|+ +.++|+++++++|
T Consensus 376 -~~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~~ 442 (471)
T PRK10883 376 -DVTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQPSW 442 (471)
T ss_pred -eeecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCCCC
Confidence 13578999999999886 68999999999999999754221 1234799999996 4699999999977
Q ss_pred ---eeEEEeechhhhhcccEEEEEEecC
Q 009242 490 ---MWNMRSAIWERQYLGQQFYLKVWNA 514 (539)
Q Consensus 490 ---~w~~HCHil~H~d~GMm~~~~V~~~ 514 (539)
.||||||||+|||.|||..|+|..|
T Consensus 443 ~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 443 AHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CCCcEEeecccccccccCCccCeEEecC
Confidence 8999999999999999999999664
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.5e-60 Score=499.24 Aligned_cols=410 Identities=22% Similarity=0.265 Sum_probs=297.0
Q ss_pred EEEEEEEEeec-CCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc-CCccCC
Q 009242 32 YTWTVTSGTLS-PLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT-NCPIPP 109 (539)
Q Consensus 32 ~~l~~~~~~~~-~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-~~~i~p 109 (539)
..+........ .+++....|.|||++|||+||+++||+|+|+++|.+.+++++||||+.. ++.+||++.. ++.+.|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~--p~~~dG~~~~~~~~~~~ 112 (451)
T COG2132 35 TFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPV--PGEMDGVPPLTQIPPGP 112 (451)
T ss_pred eEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCccc--CccccCCCcccccCCCC
Confidence 33333333333 4567788999999999999999999999999999998889999999855 4789999887 999999
Q ss_pred CCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccchHHHHhhhcCCCCCC
Q 009242 110 NSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNHKILRQTLDSGKSLP 189 (539)
Q Consensus 110 G~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~ 189 (539)
|++++|.|+. +++||||||+|.+.|+++||+|++||++...++..+ |++..++..+|........... .......
T Consensus 113 ~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~ 187 (451)
T COG2132 113 GETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDEDGTDLYQE-GPAMGGF 187 (451)
T ss_pred CCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCCCCccccC-CccccCC
Confidence 9999999996 557799999999999999999999999976655544 7777777777776543222211 0112334
Q ss_pred CCceEEECCCCCceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCC
Q 009242 190 FPDGVLINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 269 (539)
Q Consensus 190 ~~~~~liNG~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~ 269 (539)
.++..+|||+..+.+.++.| +|||||+|+++.+.+.+++.+++++||++||.+++|..+|.+.|+||||+||+++++ +
T Consensus 188 ~g~~~~vnG~~~p~~~~~~g-~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~-~ 265 (451)
T COG2132 188 PGDTLLVNGAILPFKAVPGG-VVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMN-D 265 (451)
T ss_pred CCCeEEECCCccceeecCCC-eEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcC-C
Confidence 56899999988888888775 599999999988988999999999999999999999889999999999999999998 4
Q ss_pred CcceEEEEeeecccCccceEEEEEecCCCCCC---CCCCCCCCCccc-ccccccccccccccccCCCCCCCCCCcccccc
Q 009242 270 PKDYYIVASTRFTKNVLTATAILHYTNSHSPA---SGPLPTGPTYEI-HWSMKQARTFRWNLTANAARPNPQGSFHYGKI 345 (539)
Q Consensus 270 ~g~~~~~~~~~~~~~~~~~~ail~y~~~~~~~---~~~~p~~p~~~~-~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~ 345 (539)
.+.+.+.+......+ ...+........... .......+..+. +.. ... .+... ...+ ..
T Consensus 266 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~----~~~~~--~~~~-------~~ 328 (451)
T COG2132 266 GGAVTLTALGEDMPD--TLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHA--PVG----LLVTI--LVEP-------GP 328 (451)
T ss_pred CCeEEEEeccccCCc--eeeeeeccccccccccccccccccCCCcchhhcc--ccc----cchhh--cCCC-------cc
Confidence 778888887511111 111111111101000 000000010000 000 000 00000 0000 00
Q ss_pred ccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEEEEEE
Q 009242 346 NTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVF 425 (539)
Q Consensus 346 ~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~~i 425 (539)
..+..+.+... .+...|.+|++.|... ...+.++.|++++|+|
T Consensus 329 ~~~~~~~l~~~----~~~~~~~~n~~~~~~~---------------------------------~~~~~~~~G~~~~~~i 371 (451)
T COG2132 329 NRDTDFHLIGG----IGGYVWAINGKAFDDN---------------------------------RVTLIAKAGTRERWVL 371 (451)
T ss_pred cccccchhhcc----cccccccccCccCCCC---------------------------------cCceeecCCCEEEEEE
Confidence 01111222211 1234488888776431 1235689999999999
Q ss_pred EcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeEEEeechhhhhccc
Q 009242 426 QNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQYLGQ 505 (539)
Q Consensus 426 ~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM 505 (539)
.|.+.+.|||||||+.|+|++.+ . ......+.||||+.+.+++.++|+|.+++||.|+||||+++|++.||
T Consensus 372 ~n~~~~~HP~HlHg~~F~v~~~~-~--------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm 442 (451)
T COG2132 372 TNDTPMPHPFHLHGHFFQVLSGD-A--------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGM 442 (451)
T ss_pred ECCCCCccCeEEcCceEEEEecC-C--------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCC
Confidence 99999999999999999999987 1 12234578999999999999999999999999999999999999999
Q ss_pred EEEEEEec
Q 009242 506 QFYLKVWN 513 (539)
Q Consensus 506 m~~~~V~~ 513 (539)
|..+.|..
T Consensus 443 ~~~~~v~~ 450 (451)
T COG2132 443 MGQFGVVP 450 (451)
T ss_pred eeEEEecC
Confidence 99998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=6.1e-49 Score=392.59 Aligned_cols=262 Identities=17% Similarity=0.204 Sum_probs=218.8
Q ss_pred ccCCCeEEEEEEEEEEeec-CCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC--CCceeeeCCcCCCCCCCCCCC
Q 009242 24 KADDPYRFYTWTVTSGTLS-PLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLD--QPFLLTWNGIKQRKNSWQDGV 100 (539)
Q Consensus 24 ~~~~~~~~~~l~~~~~~~~-~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH~HG~~~~~~~~~DG~ 100 (539)
.+..++++|+|++++..++ .+|+.+.+|+|||++|||+||+++||+|+|+|+|.+. .++++||||. ..+||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 4566889999999999988 4699999999999999999999999999999999985 5899999996 247887
Q ss_pred ccc-CCccCCCCeEEEEEEeCCCccceeEccCc----chhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeeecccch
Q 009242 101 LGT-NCPIPPNSNYTYKFQTKDQIGSYFYFPST----LMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDWFKTNH 175 (539)
Q Consensus 101 ~~~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~----~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~ 175 (539)
+.+ + |.||++++|+|++ +++||||||||. ..|+.+||+|+|||++++..+ ..|+|++|+++||+++.+
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 766 5 9999999999996 679999999995 479999999999999864322 348999999999999764
Q ss_pred HHHHhhhc-C-C-CCCCCCceEEECCCCC---ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCcccccee-
Q 009242 176 KILRQTLD-S-G-KSLPFPDGVLINGQGH---TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNI- 248 (539)
Q Consensus 176 ~~~~~~~~-~-~-~~~~~~~~~liNG~~~---~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~- 248 (539)
........ . + .....++.++|||+.. +.+++++|+++||||+|+++.+.+.||++|+.+++|+.||.++.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~ 249 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNR 249 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCC
Confidence 33111100 0 0 1124568999999954 46799999999999999999898999999999999999999998654
Q ss_pred -eceEEEcCCceEEEEEEeCCCCcceEEEEeeecccCccceEEEEEecCCC
Q 009242 249 -YDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRFTKNVLTATAILHYTNSH 298 (539)
Q Consensus 249 -~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~~~~~~~~~~ail~y~~~~ 298 (539)
++++.|+||||+||+|+++ +||.|+++++...........++|+|++..
T Consensus 250 ~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 250 DVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 8999999999999999999 589999999876443234577899998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=9e-36 Score=254.49 Aligned_cols=115 Identities=38% Similarity=0.762 Sum_probs=107.4
Q ss_pred EEEEEeecCCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc-CCccCCCCeE
Q 009242 35 TVTSGTLSPLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT-NCPIPPNSNY 113 (539)
Q Consensus 35 ~~~~~~~~~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-~~~i~pG~~~ 113 (539)
+|++.++.++|..+++|+|||++|||+||+++||+|+|+|+|+++++++|||||+++...+++||++++ |++|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 478899999988899999999999999999999999999999999999999999999888889999998 9999999999
Q ss_pred EEEEEeCCCccceeEccCcchhhccceeeEEEEecC
Q 009242 114 TYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQR 149 (539)
Q Consensus 114 ~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 149 (539)
+|+|++++++||||||||.+.|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999998666999999999998877999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=4.5e-30 Score=228.28 Aligned_cols=108 Identities=31% Similarity=0.485 Sum_probs=99.4
Q ss_pred CCcceeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEe
Q 009242 406 SSVATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSL 485 (539)
Q Consensus 406 ~~~~~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~a 485 (539)
.+.++..+.++.|+++||+|+|.+.+.|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 55678889999999999999999999999999999999999998877655556788999999999999999999999999
Q ss_pred CCceeeEEEeechhhhhcccEEEEEEec
Q 009242 486 DNQGMWNMRSAIWERQYLGQQFYLKVWN 513 (539)
Q Consensus 486 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 513 (539)
+|||.|+||||+++|++.|||+.|+|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=1.6e-25 Score=203.37 Aligned_cols=136 Identities=36% Similarity=0.627 Sum_probs=113.6
Q ss_pred CceeEEeeeecccchHHHHh-hhcCC----CCCCCCceEEECCCCC-------------ceEEEecCCEEEEEEEecCCC
Q 009242 161 GDFTLLIGDWFKTNHKILRQ-TLDSG----KSLPFPDGVLINGQGH-------------TTFNGDQGKTYMFRISNVGLS 222 (539)
Q Consensus 161 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~-------------~~l~v~~G~~~rlRliN~~~~ 222 (539)
.|++|+++||+++....+.. .+..+ ...+.+++++|||+.. +.+++++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 47899999999987665543 32222 2256889999999653 589999999999999999999
Q ss_pred CeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee----cccCccceEEEEEecC
Q 009242 223 TSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR----FTKNVLTATAILHYTN 296 (539)
Q Consensus 223 ~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~----~~~~~~~~~ail~y~~ 296 (539)
..+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++|+|+|++... .........|||+|++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999997699999999522 2234567899999986
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.75 E-value=8e-18 Score=149.22 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=79.9
Q ss_pred CCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC---CCceeeeCCcCCCCCCCCCCCccc-CCccCCC----Ce--E
Q 009242 44 LGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLD---QPFLLTWNGIKQRKNSWQDGVLGT-NCPIPPN----SN--Y 113 (539)
Q Consensus 44 ~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~---~~~~iH~HG~~~~~~~~~DG~~~~-~~~i~pG----~~--~ 113 (539)
.+.....+.++| .++|+|++++||+|+|+++|.++ ..+.||+||......+.+||++.. +++|.|+ +. .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 345555677788 46999999999999999999964 446677777655444569999887 8888884 11 3
Q ss_pred EEEEEeCCCccceeEccCcchhhccceeeEEEEe
Q 009242 114 TYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIY 147 (539)
Q Consensus 114 ~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 147 (539)
++.|+. .++||||||||...|..+||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 455654 379999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.71 E-value=1.4e-15 Score=152.51 Aligned_cols=242 Identities=12% Similarity=0.004 Sum_probs=155.7
Q ss_pred CceEEECCCCC-ceEEEecCCEEEEEEEecCCC-CeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCC
Q 009242 191 PDGVLINGQGH-TTFNGDQGKTYMFRISNVGLS-TSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQ 268 (539)
Q Consensus 191 ~~~~liNG~~~-~~l~v~~G~~~rlRliN~~~~-~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~ 268 (539)
.+.+++||+.. |.+++++|++++++|.|.... ..+.+++|++. +.||... ...|.||+++.+.++++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~- 115 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT- 115 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC-
Confidence 35899999975 689999999999999998642 35689999874 4566431 23489999999999998
Q ss_pred CCcceEEEEeeec--ccCc-cceEEEEEecCCCCCCCCCCCCCCCcccccccccccccccccccCCCCCCCCCCcccccc
Q 009242 269 PPKDYYIVASTRF--TKNV-LTATAILHYTNSHSPASGPLPTGPTYEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKI 345 (539)
Q Consensus 269 ~~g~~~~~~~~~~--~~~~-~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~ 345 (539)
.+|.||+|||... ..+. ..-.+.|.+..... ++. ...+.... ..++ .+...... .
T Consensus 116 ~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~~-~d~e~~l~---l~d~--~~~~~~~~---~-------- 173 (311)
T TIGR02376 116 RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LPE-YDKEYYIG---ESDL--YTPKDEGE---G-------- 173 (311)
T ss_pred CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----CcC-cceeEEEe---eeeE--eccccccc---c--------
Confidence 6999999999532 1111 11223344443211 111 00011000 0000 00000000 0
Q ss_pred ccceEEEEccc-ccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEEEEE
Q 009242 346 NTTRTIVLANS-APLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVV 424 (539)
Q Consensus 346 ~~~r~~~l~~~-~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~~ 424 (539)
..+..... ... .....+.|||+..... | .+.++.|++++|+
T Consensus 174 ---~~~~~~~~~~~~-~~~~~~~iNG~~~~~~--~--------------------------------~~~v~~G~~~RlR 215 (311)
T TIGR02376 174 ---GAYEDDVAAMRT-LTPTHVVFNGAVGALT--G--------------------------------DNALTAGVGERVL 215 (311)
T ss_pred ---ccccchHHHHhc-CCCCEEEECCccCCCC--C--------------------------------CcccccCCcEEEE
Confidence 00000000 000 1113478898853210 0 1357889999999
Q ss_pred EEcCCC-CCCceeecCCceEEEeeccCcCCcccccccCCCCCC-cceEEEeCCCcEEEEEEEeCCceeeEEEeechhhh-
Q 009242 425 FQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTL-TRHTAQVYPQSWTVILVSLDNQGMWNMRSAIWERQ- 501 (539)
Q Consensus 425 i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~- 501 (539)
|.|.+. ..+.||++|++|.++..++....+ +. ..||+.|.||+.+.|.++++.||.|++|||...|.
T Consensus 216 iiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~ 285 (311)
T TIGR02376 216 FVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAF 285 (311)
T ss_pred EEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHH
Confidence 999874 679999999999999986543221 22 36999999999999999999999999999999887
Q ss_pred hcccEEEEEEec
Q 009242 502 YLGQQFYLKVWN 513 (539)
Q Consensus 502 d~GMm~~~~V~~ 513 (539)
..||++.++|..
T Consensus 286 ~~g~~~~i~~~g 297 (311)
T TIGR02376 286 EKGAAAQVKVEG 297 (311)
T ss_pred hCCCEEEEEECC
Confidence 679999998854
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.65 E-value=5.1e-16 Score=167.01 Aligned_cols=112 Identities=16% Similarity=0.273 Sum_probs=91.0
Q ss_pred CeEEEEEEEEEEeecCCCeeeEEEEECCCCCCc--eEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc--
Q 009242 28 PYRFYTWTVTSGTLSPLGVPQEVILINGQFPGP--RLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT-- 103 (539)
Q Consensus 28 ~~~~~~l~~~~~~~~~~G~~~~~~~~nG~~pgP--~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-- 103 (539)
+.|++++.++ .+..+.+|+|||+.+++ .|++++||+|+|+|.|.+..++.|||||+.... ...||....
T Consensus 471 p~r~~~~~L~------g~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v-~~~~G~~~~~~ 543 (587)
T TIGR01480 471 PGREIELHLT------GNMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSEL-EDGQGEFQVRK 543 (587)
T ss_pred CCceEEEEEc------CCCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeee-ecCCCcccccC
Confidence 4555555543 22457789999998874 799999999999999999999999999996543 223664322
Q ss_pred -CCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEe
Q 009242 104 -NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIY 147 (539)
Q Consensus 104 -~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~ 147 (539)
...|.||++++|+|.+ +++|+||||||...|...||++.+.|.
T Consensus 544 dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 544 HTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 4689999999999996 679999999999999999999999873
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.52 E-value=1e-13 Score=118.56 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhhhhcccCCCeEEEEEEEE--EEee---cCCCeeeEEE-EECCCCCCceEEEEcCCEEEEEEEECCCCCc
Q 009242 9 LLVCVVLAALSVALVKADDPYRFYTWTVT--SGTL---SPLGVPQEVI-LINGQFPGPRLDVVTNDNIILNVINKLDQPF 82 (539)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~G~~~~~~-~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~ 82 (539)
|+..+.+.+|+ +..+.+..++|+++|+ +..+ ...|.+...+ ++|+++..+.|+|++||+|+++++|..+.++
T Consensus 6 ~~~~~~~~~~~--~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H 83 (135)
T TIGR03096 6 MFAGFALGLLL--MGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISE 83 (135)
T ss_pred HhHHHHHHHhh--ccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCcc
Confidence 45555555555 5777888899999999 7666 3568777766 9999999999999999999999999876554
Q ss_pred --eeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc
Q 009242 83 --LLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL 133 (539)
Q Consensus 83 --~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 133 (539)
.+++||+ +..|.||++.+|+|++ +++|+|||||-.|
T Consensus 84 ~f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 84 GFSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred ceEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 4444442 2568999999999995 7899999999877
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.48 E-value=2.5e-12 Score=137.52 Aligned_cols=247 Identities=17% Similarity=0.185 Sum_probs=150.1
Q ss_pred eEEEEEEEEEEeecCCC--------------eeeEEEEECCCCCCceEEEEcCCEEEEEEEECC-CCCceeee-CCcCCC
Q 009242 29 YRFYTWTVTSGTLSPLG--------------VPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTW-NGIKQR 92 (539)
Q Consensus 29 ~~~~~l~~~~~~~~~~G--------------~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~-HG~~~~ 92 (539)
..++.|.+++.....+| .....+++||+. .|.+.++ |.++++|+.|.. .....+.+ .|..+.
T Consensus 179 ~~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~ 256 (523)
T PRK10965 179 VDDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY 256 (523)
T ss_pred CceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE
Confidence 34666777765554333 233467999995 7898885 669999999997 45567776 454322
Q ss_pred CCCCCCCCcc-----c-CCccCCCCeEEEEEEeCCCccceeEccCcchhhc------cceeeEEEEecC---CCCCCC--
Q 009242 93 KNSWQDGVLG-----T-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRA------AGGYGGINIYQR---PRIPIP-- 155 (539)
Q Consensus 93 ~~~~~DG~~~-----~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~------~Gl~G~liV~~~---~~~~~~-- 155 (539)
--..||.+. + ...|.|||+++..++.. +.|.++...-...+.. ..-+-.+-|... ...+.|
T Consensus 257 -vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 334 (523)
T PRK10965 257 -VIASDGGLLAEPVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDS 334 (523)
T ss_pred -EEEeCCCcccCccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChh
Confidence 245898542 2 45699999999999974 4677766553211111 001112223311 110111
Q ss_pred ------CCC----CCCceeEEeeeecc----------cchHHHHh--------h--------hcCCC--CCCCC---ceE
Q 009242 156 ------YPI----QDGDFTLLIGDWFK----------TNHKILRQ--------T--------LDSGK--SLPFP---DGV 194 (539)
Q Consensus 156 ------~~~----~~~e~~l~l~d~~~----------~~~~~~~~--------~--------~~~~~--~~~~~---~~~ 194 (539)
... ..+.+.|.+..+.. ........ . +..+. ..... ..+
T Consensus 335 l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (523)
T PRK10965 335 LASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHAN 414 (523)
T ss_pred hccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 01122222211100 00000000 0 00000 00001 124
Q ss_pred EECCCCCc----eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCcccc---ceeeceEEEcCCceEEEEEEeC
Q 009242 195 LINGQGHT----TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTI---QNIYDSLDVHVGQSVSVLVTLN 267 (539)
Q Consensus 195 liNG~~~~----~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~---p~~~d~l~l~pg~R~dv~v~~~ 267 (539)
+|||+.+. .++++.|++.+|+|+|.+....|+|||||+.|+|++.||.+.. +.++|||.+.| ++++++++++
T Consensus 415 ~ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~ 493 (523)
T PRK10965 415 KINGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFD 493 (523)
T ss_pred cCCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEec
Confidence 89999875 4789999999999999997666899999999999999999765 34689999977 8899999997
Q ss_pred C---CCcceEEEEeee
Q 009242 268 Q---PPKDYYIVASTR 280 (539)
Q Consensus 268 ~---~~g~~~~~~~~~ 280 (539)
. .+|.|++|||..
T Consensus 494 ~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 494 HDAPKEHAYMAHCHLL 509 (523)
T ss_pred CCCCCCCCEEEEeCch
Confidence 3 467999999965
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.43 E-value=1.7e-11 Score=132.49 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=141.3
Q ss_pred EEEEECCCC-C--------CceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeE
Q 009242 49 EVILINGQF-P--------GPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNY 113 (539)
Q Consensus 49 ~~~~~nG~~-p--------gP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~ 113 (539)
..+++||+. + .++|+|++|+++++|+.|.. .....+|.+|..+.. -+.||.+. + ...|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 468999984 1 24899999999999999997 455788889876543 56899854 2 4579999999
Q ss_pred EEEEEeCCCccceeEccCcc--hh--hc-cceeeEEEEecCCCCCCC---CC-CCCC-----c----e-eEEeeeecc--
Q 009242 114 TYKFQTKDQIGSYFYFPSTL--MH--RA-AGGYGGINIYQRPRIPIP---YP-IQDG-----D----F-TLLIGDWFK-- 172 (539)
Q Consensus 114 ~y~~~~~~~~Gt~wYH~H~~--~~--~~-~Gl~G~liV~~~~~~~~~---~~-~~~~-----e----~-~l~l~d~~~-- 172 (539)
+..+++.+.+|.||.+.+.. .+ .. ..-.+.|...+......+ .. ..+. + . .+....+..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 99999755589999998742 11 11 112233333221111101 00 0000 0 0 000000000
Q ss_pred --cchH----HHHhhhcCCC-----C-CCCCceEEECCCCC---------------------------------------
Q 009242 173 --TNHK----ILRQTLDSGK-----S-LPFPDGVLINGQGH--------------------------------------- 201 (539)
Q Consensus 173 --~~~~----~~~~~~~~~~-----~-~~~~~~~liNG~~~--------------------------------------- 201 (539)
..+. .+...+.... . ......+.|||..+
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 0000 0000000000 0 00001234555421
Q ss_pred ---------ceEEEecCCEEEEEEEecCC--CCeeeEEEeCCeeEEEEec-Ccc-----------ccceeeceEEEcCCc
Q 009242 202 ---------TTFNGDQGKTYMFRISNVGL--STSFNFRIQGHTMKLVEVE-GSH-----------TIQNIYDSLDVHVGQ 258 (539)
Q Consensus 202 ---------~~l~v~~G~~~rlRliN~~~--~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pg~ 258 (539)
..+.++.|+++++.|.|.+. ...|+||||||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 13667789999999999753 2368999999999999986 321 247789999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeec
Q 009242 259 SVSVLVTLNQPPKDYYIVASTRF 281 (539)
Q Consensus 259 R~dv~v~~~~~~g~~~~~~~~~~ 281 (539)
-+-+.++++ +||.|.+|||-..
T Consensus 486 ~vvirf~ad-NPG~W~~HCHi~~ 507 (539)
T TIGR03389 486 WAAIRFVAD-NPGVWFMHCHLEV 507 (539)
T ss_pred eEEEEEecC-CCeEEEEEecccc
Confidence 999999999 8999999999653
No 27
>PLN02835 oxidoreductase
Probab=99.43 E-value=1e-11 Score=133.32 Aligned_cols=248 Identities=12% Similarity=0.076 Sum_probs=152.3
Q ss_pred eEEEEEEEEEEeecC---------CC---eeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCC
Q 009242 29 YRFYTWTVTSGTLSP---------LG---VPQEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNS 95 (539)
Q Consensus 29 ~~~~~l~~~~~~~~~---------~G---~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~ 95 (539)
.+++.|.+++-.... .| .....+++||+. .|+++|++|+++++|+.|... ....+|..|..+.. .
T Consensus 160 d~e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I 237 (539)
T PLN02835 160 DGDFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-V 237 (539)
T ss_pred CceEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-E
Confidence 567778777632111 22 123568999996 589999999999999999984 57889999986543 5
Q ss_pred CCCCCcc----c-CCccCCCCeEEEEEEeCCCccceeEccCcchh-hccceeeEEEEecCCC---CCCCC-CCCCC--c-
Q 009242 96 WQDGVLG----T-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMH-RAAGGYGGINIYQRPR---IPIPY-PIQDG--D- 162 (539)
Q Consensus 96 ~~DG~~~----~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~-~~~Gl~G~liV~~~~~---~~~~~-~~~~~--e- 162 (539)
+.||.+. + ...|.|||+++..+++.+.+|.||.+.-.... ......+.|-.++... .+.|. +..+. +
T Consensus 238 ~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~ 317 (539)
T PLN02835 238 EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSM 317 (539)
T ss_pred EECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccc
Confidence 6899754 2 45699999999999986568999998632111 1111223333322110 01111 00000 0
Q ss_pred -----eeEEeeeecccchHH----H-----Hhh--hcCCCC-CCCCceEEECCCCCc-----------------------
Q 009242 163 -----FTLLIGDWFKTNHKI----L-----RQT--LDSGKS-LPFPDGVLINGQGHT----------------------- 202 (539)
Q Consensus 163 -----~~l~l~d~~~~~~~~----~-----~~~--~~~~~~-~~~~~~~liNG~~~~----------------------- 202 (539)
....+.......... . ... +..... ......+.+||..+.
T Consensus 318 ~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 397 (539)
T PLN02835 318 RQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSI 397 (539)
T ss_pred chhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCcc
Confidence 000000000000000 0 000 000000 000124566666542
Q ss_pred --------------eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEe-cCcc----------ccceeeceEEEcCC
Q 009242 203 --------------TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEV-EGSH----------TIQNIYDSLDVHVG 257 (539)
Q Consensus 203 --------------~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~-DG~~----------~~p~~~d~l~l~pg 257 (539)
.+.++.|+++.|-|-|.+.. .|+||||||.|+|++. +|.+ ..|...||+.+.++
T Consensus 398 ~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~ 476 (539)
T PLN02835 398 QSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPK 476 (539)
T ss_pred ccCCCCCccccCCeEEEcCCCCEEEEEEECCCCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCC
Confidence 13345677889988887654 5799999999999997 5522 24889999999999
Q ss_pred ceEEEEEEeCCCCcceEEEEeee
Q 009242 258 QSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 258 ~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
..+.+.++++ +||.|.+|||-.
T Consensus 477 gw~~IrF~aD-NPG~Wl~HCHi~ 498 (539)
T PLN02835 477 SWTTILVSLD-NQGMWNMRSAIW 498 (539)
T ss_pred CEEEEEEECc-CCEEeeeeecch
Confidence 9999999999 899999999953
No 28
>PRK10883 FtsI repressor; Provisional
Probab=99.37 E-value=1.9e-11 Score=129.52 Aligned_cols=234 Identities=15% Similarity=0.158 Sum_probs=141.7
Q ss_pred EEEEEEEEEEeecCCC-----------eeeEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeee-CCcCCCCCCC
Q 009242 30 RFYTWTVTSGTLSPLG-----------VPQEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTW-NGIKQRKNSW 96 (539)
Q Consensus 30 ~~~~l~~~~~~~~~~G-----------~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~-HG~~~~~~~~ 96 (539)
.++.|.+++..+..+| .....+++||+. .|.|.|+.| ++++|+.|... ....+++ +|.... -..
T Consensus 180 ~d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa 256 (471)
T PRK10883 180 DDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIA 256 (471)
T ss_pred cceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEE
Confidence 3666777665443322 334568999995 799999875 89999999984 5678888 565322 145
Q ss_pred CCCCc----c-c-CCccCCCCeEEEEEEeCCCccceeEccCcchhhccceee------------EEEEecCCCCCCCCCC
Q 009242 97 QDGVL----G-T-NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYG------------GINIYQRPRIPIPYPI 158 (539)
Q Consensus 97 ~DG~~----~-~-~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G------------~liV~~~~~~~~~~~~ 158 (539)
.||-+ . + ...|.|||+++.-.++ .+.+.+.+++-.......++.+ .+-++...... +.
T Consensus 257 ~DGg~~~~P~~~~~l~l~pGeR~dvlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 332 (471)
T PRK10883 257 GDQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV-- 332 (471)
T ss_pred eCCCcccCCcEeCeEEECCCCeEEEEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC--
Confidence 78532 2 2 5679999999999997 4456677665321100011111 11111110000 00
Q ss_pred CCCceeEEeeeecccchHHHHh-hhcCCCCCCCCceEEECCCCCc----eEEEecCCEEEEEEEecCCCCeeeEEEeCCe
Q 009242 159 QDGDFTLLIGDWFKTNHKILRQ-TLDSGKSLPFPDGVLINGQGHT----TFNGDQGKTYMFRISNVGLSTSFNFRIQGHT 233 (539)
Q Consensus 159 ~~~e~~l~l~d~~~~~~~~~~~-~~~~~~~~~~~~~~liNG~~~~----~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~ 233 (539)
....+..+............. .+..+ .+.++|||+.+. .++++.|++++|+|.|.. .|+||||||.
T Consensus 333 -~~~~p~~l~~~~~~~~~~~~~~~~~l~-----~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~ 403 (471)
T PRK10883 333 -TDNLPMRLLPDEIMEGSPIRSREISLG-----DDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVM 403 (471)
T ss_pred -CCcCChhhcCCCCCCCCCcceEEEEec-----CCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCcc
Confidence 000111000000000000000 00000 123479999875 468999999999998862 5799999999
Q ss_pred eEEEEecCccccc---eeeceEEEcCCceEEEEEEeCCCCc---ceEEEEeeec
Q 009242 234 MKLVEVEGSHTIQ---NIYDSLDVHVGQSVSVLVTLNQPPK---DYYIVASTRF 281 (539)
Q Consensus 234 ~~via~DG~~~~p---~~~d~l~l~pg~R~dv~v~~~~~~g---~~~~~~~~~~ 281 (539)
|+|++.||....+ -+.|||.+. +++.++++++...+ .|++|||...
T Consensus 404 FqVl~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLe 455 (471)
T PRK10883 404 FLIRNVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLE 455 (471)
T ss_pred EEEEEecCCCCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeeccccc
Confidence 9999999986543 457999994 47999999995333 7999999653
No 29
>PLN02354 copper ion binding / oxidoreductase
Probab=99.25 E-value=3.3e-10 Score=121.97 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=139.4
Q ss_pred EEEEECCCCC------CceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEE
Q 009242 49 EVILINGQFP------GPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYK 116 (539)
Q Consensus 49 ~~~~~nG~~p------gP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~ 116 (539)
...++||+.. -|+|+|++|++.++||.|.. .....+|..|..+.. -+.||++. + ...|.|||+++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKL-VEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEE-EEeCCcccCCcceeEEEEccCceEEEE
Confidence 4689999841 38999999999999999997 456788998876543 57899854 2 4569999999999
Q ss_pred EEeCCCccceeEccCcchh-hccceeeEEEEecCCCC---CCCCCCCC--------CceeEEeeee--cccc-h------
Q 009242 117 FQTKDQIGSYFYFPSTLMH-RAAGGYGGINIYQRPRI---PIPYPIQD--------GDFTLLIGDW--FKTN-H------ 175 (539)
Q Consensus 117 ~~~~~~~Gt~wYH~H~~~~-~~~Gl~G~liV~~~~~~---~~~~~~~~--------~e~~l~l~d~--~~~~-~------ 175 (539)
+++.+.+|.||........ ......|.|..++.... ..|....+ .+...-+.-. .... .
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 9976568999998874311 11112333333322110 01100000 0000000000 0000 0
Q ss_pred HHHHhh--hcCCC-CCCCCceEEECCCCCc----------------------------------------eEEEecCCEE
Q 009242 176 KILRQT--LDSGK-SLPFPDGVLINGQGHT----------------------------------------TFNGDQGKTY 212 (539)
Q Consensus 176 ~~~~~~--~~~~~-~~~~~~~~liNG~~~~----------------------------------------~l~v~~G~~~ 212 (539)
..+... +.... .......+.|||..+. .+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 000000 00000 0000013445554321 2445667888
Q ss_pred EEEEEecCCCCeeeEEEeCCeeEEEEec-Cc----------cccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 213 MFRISNVGLSTSFNFRIQGHTMKLVEVE-GS----------HTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 213 rlRliN~~~~~~~~~~l~gh~~~via~D-G~----------~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.+-|.|... ..|+||||||.|+|++.. |. ...|...||+.+.++.=.-+-++++ +||.|.||||-
T Consensus 429 eiVi~n~~~-~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCHi 504 (552)
T PLN02354 429 EIIFENHEK-SMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSEN 504 (552)
T ss_pred EEEEeCCCC-CCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeeccc
Confidence 887888654 367999999999999873 21 1358899999999999999999999 89999999996
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.23 E-value=2.2e-10 Score=123.95 Aligned_cols=219 Identities=11% Similarity=0.051 Sum_probs=131.4
Q ss_pred ceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEeCCCc-cceeEccCc
Q 009242 60 PRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQTKDQI-GSYFYFPST 132 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~~~~~-Gt~wYH~H~ 132 (539)
++|.|++|+++++|+.|.. .....+++.|..+.. -+.||.+. + ...|.|||+++..+++.+.+ |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 3589999999999999987 567788888876543 56899754 2 55699999999999974334 589998654
Q ss_pred chhhc-cceeeEEEEecCCCC-C-----C---C-CCCC----CCceeEEeeeecccchHHHHh--hh-cCCCCCCCCceE
Q 009242 133 LMHRA-AGGYGGINIYQRPRI-P-----I---P-YPIQ----DGDFTLLIGDWFKTNHKILRQ--TL-DSGKSLPFPDGV 194 (539)
Q Consensus 133 ~~~~~-~Gl~G~liV~~~~~~-~-----~---~-~~~~----~~e~~l~l~d~~~~~~~~~~~--~~-~~~~~~~~~~~~ 194 (539)
..+.. .....+++....... . . + +... +.+..+.-............. .+ ...........+
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 32211 111124444322111 0 0 0 0000 000000000000000000000 00 000000001124
Q ss_pred EECCCCCc-----------------------------------------------eEEEecCCEEEEEEEecCC-----C
Q 009242 195 LINGQGHT-----------------------------------------------TFNGDQGKTYMFRISNVGL-----S 222 (539)
Q Consensus 195 liNG~~~~-----------------------------------------------~l~v~~G~~~rlRliN~~~-----~ 222 (539)
++||..+. .+.++.|++|.+.|.|.+. .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 45544321 2567789999999999753 3
Q ss_pred CeeeEEEeCCeeEEEEec-Ccc-----------ccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 223 TSFNFRIQGHTMKLVEVE-GSH-----------TIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 223 ~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
..|+||||||.|+|++.+ |.+ ..|...||+.+.++.-+-+-++++ +||.|.+|||-.
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~ 510 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIE 510 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccch
Confidence 468999999999999986 432 137789999999999999999999 899999999954
No 31
>PLN02604 oxidoreductase
Probab=99.23 E-value=4e-10 Score=122.33 Aligned_cols=217 Identities=13% Similarity=0.095 Sum_probs=131.5
Q ss_pred ceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEeCCCcc-ceeEccCc
Q 009242 60 PRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQTKDQIG-SYFYFPST 132 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~~~~~G-t~wYH~H~ 132 (539)
++|.+++|+++++|+.|.. .....++..|..+.. -+.||.+. + ...|.|||+++..+++.+.+| .||-+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~V-Ia~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEE-EEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 5899999999999999997 456677777776543 56899754 2 567999999999999754444 79998543
Q ss_pred c---hhhccceeeEEEEecCCC--CCCCCCC----CCCceeEEeeee---------cccchHHHHhh--h-cCCCCCCCC
Q 009242 133 L---MHRAAGGYGGINIYQRPR--IPIPYPI----QDGDFTLLIGDW---------FKTNHKILRQT--L-DSGKSLPFP 191 (539)
Q Consensus 133 ~---~~~~~Gl~G~liV~~~~~--~~~~~~~----~~~e~~l~l~d~---------~~~~~~~~~~~--~-~~~~~~~~~ 191 (539)
. .+...| . +++...... .+.+... .-.+....+... ........... + .........
T Consensus 303 ~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 2 122333 2 333332111 0001000 000000000000 00000000000 0 000000001
Q ss_pred ceEEECCCCCc------------------------------------------------eEEEecCCEEEEEEEecCC--
Q 009242 192 DGVLINGQGHT------------------------------------------------TFNGDQGKTYMFRISNVGL-- 221 (539)
Q Consensus 192 ~~~liNG~~~~------------------------------------------------~l~v~~G~~~rlRliN~~~-- 221 (539)
..+.|||..+. .+.++.|++|.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 23445544321 2667789999999999753
Q ss_pred ---CCeeeEEEeCCeeEEEEec-Ccc-----------ccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 222 ---STSFNFRIQGHTMKLVEVE-GSH-----------TIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 222 ---~~~~~~~l~gh~~~via~D-G~~-----------~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
...|+||||||.|+|++.+ |.+ ..|...||+.+.++.-+-|.++++ +||.|.+|||-.
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~ 533 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIE 533 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecch
Confidence 2468999999999999987 432 137789999999999999999999 899999999954
No 32
>PLN02168 copper ion binding / pectinesterase
Probab=99.20 E-value=1.7e-09 Score=116.04 Aligned_cols=243 Identities=14% Similarity=0.086 Sum_probs=145.0
Q ss_pred EEEEECCCC-CCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEeCC
Q 009242 49 EVILINGQF-PGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQTKD 121 (539)
Q Consensus 49 ~~~~~nG~~-pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~~~ 121 (539)
..+++||+. ..|+|.+++|+++++|+.|... ....++..|..+.. -+.||.+. + ...|.|||+++..+++.+
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 468999995 2689999999999999999974 45788888876543 46899743 2 567999999999999754
Q ss_pred Cc-c---ceeEccCcc--hhhccceeeEEEEecCCCC----CCCC-CCC-CC----ceeEEee-eec---ccchH-----
Q 009242 122 QI-G---SYFYFPSTL--MHRAAGGYGGINIYQRPRI----PIPY-PIQ-DG----DFTLLIG-DWF---KTNHK----- 176 (539)
Q Consensus 122 ~~-G---t~wYH~H~~--~~~~~Gl~G~liV~~~~~~----~~~~-~~~-~~----e~~l~l~-d~~---~~~~~----- 176 (539)
+. | .||.+.-.. .+...+ . +++..+.... +.+. +.. +. +....+. ... .....
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 43 4 899886642 112222 2 3444432211 1110 000 00 1000000 000 00000
Q ss_pred ----HHHhhhcCCCC---CCCCceEEECCCCCc-------------------------------------eEEEecCCEE
Q 009242 177 ----ILRQTLDSGKS---LPFPDGVLINGQGHT-------------------------------------TFNGDQGKTY 212 (539)
Q Consensus 177 ----~~~~~~~~~~~---~~~~~~~liNG~~~~-------------------------------------~l~v~~G~~~ 212 (539)
.+...+..... ......+.|||..+. .++++.|+.|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 00000000000 000124556665542 1456677888
Q ss_pred EEEEEecCCCCeeeEEEeCCeeEEEEe-----cC------ccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeeec
Q 009242 213 MFRISNVGLSTSFNFRIQGHTMKLVEV-----EG------SHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTRF 281 (539)
Q Consensus 213 rlRliN~~~~~~~~~~l~gh~~~via~-----DG------~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~~ 281 (539)
.+=|-|... ..|+||||||.|+|++. |+ ++..|...||+.+.++.=+-+-++++ +||.|.+|||-..
T Consensus 426 eiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi~~ 503 (545)
T PLN02168 426 HIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQKAE 503 (545)
T ss_pred EEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecCcc
Confidence 886666544 46799999999999977 21 22468899999999999999999999 8999999999532
Q ss_pred ccCccceEEEEEecC
Q 009242 282 TKNVLTATAILHYTN 296 (539)
Q Consensus 282 ~~~~~~~~ail~y~~ 296 (539)
.-....+++++..+|
T Consensus 504 ~~h~g~gl~~~v~~~ 518 (545)
T PLN02168 504 QWYLGQELYMRVKGE 518 (545)
T ss_pred cceecCcEEEEEEcc
Confidence 222233455444333
No 33
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.20 E-value=3.6e-10 Score=120.17 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=143.3
Q ss_pred CeeeEEEEECCCCCCceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCc----cc-CCccCCCCeEEEEEE
Q 009242 45 GVPQEVILINGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVL----GT-NCPIPPNSNYTYKFQ 118 (539)
Q Consensus 45 G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~-~~~i~pG~~~~y~~~ 118 (539)
|.......+||+. -|.+ +.+|..+++|+.|.. .....+++.|..... -..||.+ .+ +..+.|||+++....
T Consensus 186 ~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455566778853 3444 445555999999998 666777777665433 4577765 34 678999999999999
Q ss_pred eCCCccceeEccCcchhhccceeeEEEEecCCCCCCCCCCCCCceeEEeeee-cccchHHHHhhh-cCC---------CC
Q 009242 119 TKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPRIPIPYPIQDGDFTLLIGDW-FKTNHKILRQTL-DSG---------KS 187 (539)
Q Consensus 119 ~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~-~~~~~~~~~~~~-~~~---------~~ 187 (539)
.. ..|++-+.|.. .+..+-+.+..-..... ..++...+........|- ...........+ ..+ ..
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPIL--TPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeecccccc--ccccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 64 47888888876 22222222222211100 000100011111111110 000000000000 000 00
Q ss_pred CCCCceEEECCCCCc----eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc---cceeeceEEEcCCceE
Q 009242 188 LPFPDGVLINGQGHT----TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT---IQNIYDSLDVHVGQSV 260 (539)
Q Consensus 188 ~~~~~~~liNG~~~~----~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~---~p~~~d~l~l~pg~R~ 260 (539)
......+.+||+.++ .+.++.|+++||+|.|-+. ..|+||+||+.|+|++.| ... .+..+|++.+.|++++
T Consensus 339 ~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~ 416 (451)
T COG2132 339 GIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERL 416 (451)
T ss_pred ccccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEE
Confidence 112356899999876 5689999999999999998 566999999999999999 322 3567999999999999
Q ss_pred EEEEEeCCCCcceEEEEeee
Q 009242 261 SVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 261 dv~v~~~~~~g~~~~~~~~~ 280 (539)
.+.++++ .+|.|++|||..
T Consensus 417 ~v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 417 LVRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEEeCC-CCCceEEeccch
Confidence 9999999 788999999965
No 34
>PLN02991 oxidoreductase
Probab=99.18 E-value=1.6e-09 Score=116.02 Aligned_cols=228 Identities=13% Similarity=0.086 Sum_probs=138.2
Q ss_pred eEEEEECCCCCCceEEEEcCCEEEEEEEECCC-CCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEeCC
Q 009242 48 QEVILINGQFPGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQTKD 121 (539)
Q Consensus 48 ~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~~~ 121 (539)
....++||+...+++.|++|+++++|+.|... ....+++.|+.+.. -+.||.+. + ...|.|||+++...++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 45789999976689999999999999999974 45788888876543 56899743 2 567999999999999866
Q ss_pred CccceeEccCcc--hhhccceeeEEEEecCCC-C--CCCCCCCCCceeEE---eeeeccc-----c--h-------HHHH
Q 009242 122 QIGSYFYFPSTL--MHRAAGGYGGINIYQRPR-I--PIPYPIQDGDFTLL---IGDWFKT-----N--H-------KILR 179 (539)
Q Consensus 122 ~~Gt~wYH~H~~--~~~~~Gl~G~liV~~~~~-~--~~~~~~~~~e~~l~---l~d~~~~-----~--~-------~~~~ 179 (539)
..|.||.-.... .+...+ .+.|-.++... . +.|....+.+...- ..++... . . ..+.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~-~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILIT-TGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcce-EEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 688999775431 111111 22222222111 0 11100000000000 0000000 0 0 0000
Q ss_pred hh--hcCCCC-CCCCceEEECCCCCc-------------------------------------eEEEecCCEEEEEEEec
Q 009242 180 QT--LDSGKS-LPFPDGVLINGQGHT-------------------------------------TFNGDQGKTYMFRISNV 219 (539)
Q Consensus 180 ~~--~~~~~~-~~~~~~~liNG~~~~-------------------------------------~l~v~~G~~~rlRliN~ 219 (539)
.. +..... ......+.|||..+. .+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 00 000000 000013445554431 24456777888866665
Q ss_pred CCCCeeeEEEeCCeeEEEEecC-c----------cccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 220 GLSTSFNFRIQGHTMKLVEVEG-S----------HTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 220 ~~~~~~~~~l~gh~~~via~DG-~----------~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.. ..|+||||||.|+|++... . +..|...|++.+.++.=+-+-++++ +||.|.+|||-
T Consensus 428 ~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi 496 (543)
T PLN02991 428 ED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSEL 496 (543)
T ss_pred CC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCc
Confidence 44 4679999999999998632 1 1358889999999999999999999 89999999996
No 35
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.17 E-value=8.8e-10 Score=118.98 Aligned_cols=229 Identities=16% Similarity=0.148 Sum_probs=136.9
Q ss_pred EEEEECCCC---------------CCceEEEEcCCEEEEEEEECCC-CCceeeeCCcC-CCCCCCCCCCcc----c-CCc
Q 009242 49 EVILINGQF---------------PGPRLDVVTNDNIILNVINKLD-QPFLLTWNGIK-QRKNSWQDGVLG----T-NCP 106 (539)
Q Consensus 49 ~~~~~nG~~---------------pgP~i~v~~Gd~v~i~~~N~l~-~~~~iH~HG~~-~~~~~~~DG~~~----~-~~~ 106 (539)
...++||+. ..|+|+|++|+++++|+.|... ....+++.|.. +.. -+.||.+. + ...
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~V-Ia~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTI-IEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEE-EEeCCCCCCceEeCeEE
Confidence 457889983 1378999999999999999974 45678888865 432 56899843 2 456
Q ss_pred cCCCCeEEEEEEeCCC-------ccceeEccCcc--hhhccceeeEEEEecCCCCCCC---CC---CC------CCceeE
Q 009242 107 IPPNSNYTYKFQTKDQ-------IGSYFYFPSTL--MHRAAGGYGGINIYQRPRIPIP---YP---IQ------DGDFTL 165 (539)
Q Consensus 107 i~pG~~~~y~~~~~~~-------~Gt~wYH~H~~--~~~~~Gl~G~liV~~~~~~~~~---~~---~~------~~e~~l 165 (539)
|.|||+++..+++.+. +|-||...-.. .+... ..+.|..++......+ .. .. ..|..+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 9999999999997432 38899775422 12111 2333333211111111 00 00 011111
Q ss_pred E-eeee-----cccchHHHHhhhcCCCCC---CCCceEEECCCCCc----------------------------------
Q 009242 166 L-IGDW-----FKTNHKILRQTLDSGKSL---PFPDGVLINGQGHT---------------------------------- 202 (539)
Q Consensus 166 ~-l~d~-----~~~~~~~~~~~~~~~~~~---~~~~~~liNG~~~~---------------------------------- 202 (539)
. +..- ...........+..+... .....+++||..+.
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 1 0000 000000000000000000 00123555554321
Q ss_pred ---eEEEecCCEEEEEEEecC-------CCCeeeEEEeCCeeEEEEe-cCcc-----------ccceeeceEEEc-----
Q 009242 203 ---TFNGDQGKTYMFRISNVG-------LSTSFNFRIQGHTMKLVEV-EGSH-----------TIQNIYDSLDVH----- 255 (539)
Q Consensus 203 ---~l~v~~G~~~rlRliN~~-------~~~~~~~~l~gh~~~via~-DG~~-----------~~p~~~d~l~l~----- 255 (539)
.+.++.|++++|.|.|.. ....|+||||||.|+|++. +|.+ ..|...||+.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~ 489 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVK 489 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccccc
Confidence 345678999999999975 2357899999999999996 4533 248889999984
Q ss_pred -----CCceEEEEEEeCCCCcceEEEEeee
Q 009242 256 -----VGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 256 -----pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
|+.-+.+.+.++ +||.|.||||-.
T Consensus 490 ~~~~~~~~~~~ir~~~d-NPG~W~~HCHi~ 518 (538)
T TIGR03390 490 VVPGAPAGWRAWRIRVT-NPGVWMMHCHIL 518 (538)
T ss_pred ccccCCCceEEEEEEcC-CCeeEEEeccch
Confidence 777788888888 899999999954
No 36
>PLN02792 oxidoreductase
Probab=99.15 E-value=6.8e-09 Score=111.37 Aligned_cols=226 Identities=14% Similarity=0.082 Sum_probs=138.1
Q ss_pred eEEEEECCCC--CCceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEe
Q 009242 48 QEVILINGQF--PGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQT 119 (539)
Q Consensus 48 ~~~~~~nG~~--pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~ 119 (539)
...+++||+- ..++|.|++|+++++|+.|.. .....+++.|+.+.. .+.||.+. + ...|.|||+++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV-I~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL-IEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE-EEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 3568999984 257899999999999999997 456788888876543 56899743 2 4569999999999997
Q ss_pred CCCccceeEccCcch--hhccceeeEEEEecCCCCC------CCCCCCCCceeEEe---eeecccc-----h--------
Q 009242 120 KDQIGSYFYFPSTLM--HRAAGGYGGINIYQRPRIP------IPYPIQDGDFTLLI---GDWFKTN-----H-------- 175 (539)
Q Consensus 120 ~~~~Gt~wYH~H~~~--~~~~Gl~G~liV~~~~~~~------~~~~~~~~e~~l~l---~d~~~~~-----~-------- 175 (539)
.+.+|.||....... ....+ -+++-....... .|. ..+.+..... .++.... .
T Consensus 258 ~~~~g~Y~i~a~~~~~~~~~~~--~ail~Y~g~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 334 (536)
T PLN02792 258 DQPPQNYSIVVSTRFIAAKVLV--SSTLHYSNSKGHKIIHARQPD-PDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYG 334 (536)
T ss_pred CCCCceEEEEEEeccCCCCCce--EEEEEECCCCCCCCCCCCCCC-cCCccccccchhhhhhccCCCCCCCCCCcccccc
Confidence 555799998866421 11111 133333221110 010 0000000000 0000000 0
Q ss_pred -HHHHhhh--cCCCC-CCCCceEEECCCCCc--------------------------------------eEEEecCCEEE
Q 009242 176 -KILRQTL--DSGKS-LPFPDGVLINGQGHT--------------------------------------TFNGDQGKTYM 213 (539)
Q Consensus 176 -~~~~~~~--~~~~~-~~~~~~~liNG~~~~--------------------------------------~l~v~~G~~~r 213 (539)
..+...+ ..... ....-.+.|||..+. .+.++.|+.|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~Ve 414 (536)
T PLN02792 335 KMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLE 414 (536)
T ss_pred eeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEE
Confidence 0000000 00000 000013345544331 24567788888
Q ss_pred EEEEecCCCCeeeEEEeCCeeEEEEe-cCc----------cccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 214 FRISNVGLSTSFNFRIQGHTMKLVEV-EGS----------HTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 214 lRliN~~~~~~~~~~l~gh~~~via~-DG~----------~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
+-|-|.... .|+||||||.|+|++. +|. +..|...||+.+.++.=.-+-+.++ +||.|.+|||-
T Consensus 415 iViqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~ 489 (536)
T PLN02792 415 IIFQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQF 489 (536)
T ss_pred EEEECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcc
Confidence 877775443 5799999999999985 222 2358889999999999999999999 89999999974
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.03 E-value=1.1e-08 Score=110.95 Aligned_cols=225 Identities=13% Similarity=0.085 Sum_probs=130.9
Q ss_pred ECCCCCCceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCCCCcc----c-CCccCCCCeEEEEEEeCCCc-cc
Q 009242 53 INGQFPGPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQDGVLG----T-NCPIPPNSNYTYKFQTKDQI-GS 125 (539)
Q Consensus 53 ~nG~~pgP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~-~~~i~pG~~~~y~~~~~~~~-Gt 125 (539)
.||+.-.++|.|++|++.++|+.|.. .....+++.|+.+.. -+.||.+. + ...|.|||+++.-+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 34433223799999999999999997 456678888876543 56899855 2 55699999999999975445 58
Q ss_pred eeEccCcchhh---ccceeeEEEEecCCCCCCC---------CCCC--CCceeEE-eeeec-ccchHHH-Hh--hhcCCC
Q 009242 126 YFYFPSTLMHR---AAGGYGGINIYQRPRIPIP---------YPIQ--DGDFTLL-IGDWF-KTNHKIL-RQ--TLDSGK 186 (539)
Q Consensus 126 ~wYH~H~~~~~---~~Gl~G~liV~~~~~~~~~---------~~~~--~~e~~l~-l~d~~-~~~~~~~-~~--~~~~~~ 186 (539)
||-+.-...+. ..++ +.|-.+.......+ +... ..+.... +.... .+..... .. .+....
T Consensus 298 y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 376 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN 376 (574)
T ss_pred EEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc
Confidence 99886433211 1222 22222221111000 0000 0000000 00000 0000000 00 000000
Q ss_pred CCCCCceEEECCCCCc-----------------------------------------------eEEEecCCEEEEEEEec
Q 009242 187 SLPFPDGVLINGQGHT-----------------------------------------------TFNGDQGKTYMFRISNV 219 (539)
Q Consensus 187 ~~~~~~~~liNG~~~~-----------------------------------------------~l~v~~G~~~rlRliN~ 219 (539)
.......+++||..+. .+.++.|+.+.+=|.|.
T Consensus 377 ~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~ 456 (574)
T PLN02191 377 LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNA 456 (574)
T ss_pred eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECC
Confidence 0000113445554321 23455588999978876
Q ss_pred C-----CCCeeeEEEeCCeeEEEEecC-c-----------cccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 220 G-----LSTSFNFRIQGHTMKLVEVEG-S-----------HTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 220 ~-----~~~~~~~~l~gh~~~via~DG-~-----------~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
. ....|+||||||.|+|++... . ...|...|++.+.++.=+-+-++++ +||.|.+|||-.
T Consensus 457 ~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~ 533 (574)
T PLN02191 457 NVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIE 533 (574)
T ss_pred CcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCch
Confidence 4 234689999999999998743 2 1247889999999999999999998 899999999954
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.94 E-value=7.8e-09 Score=91.56 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=70.5
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc-----------cceeeceEEEcCCceEEEEEEeCCCCc
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVSVLVTLNQPPK 271 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-----------~p~~~d~l~l~pg~R~dv~v~~~~~~g 271 (539)
.++++.|++++|+|.|.+.. .++||+||+.|+|++.++... .|..+|++.+.||+++.+.++++ .+|
T Consensus 35 ~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~~G 112 (138)
T PF07731_consen 35 VIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-NPG 112 (138)
T ss_dssp EEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-STE
T ss_pred eEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-cce
Confidence 78999999999999998886 569999999999999999884 57789999999999999999998 899
Q ss_pred ceEEEEeee
Q 009242 272 DYYIVASTR 280 (539)
Q Consensus 272 ~~~~~~~~~ 280 (539)
.|.+|||..
T Consensus 113 ~w~~HCHi~ 121 (138)
T PF07731_consen 113 PWLFHCHIL 121 (138)
T ss_dssp EEEEEESSH
T ss_pred EEEEEEchH
Confidence 999999965
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.87 E-value=2.4e-07 Score=100.24 Aligned_cols=235 Identities=12% Similarity=0.145 Sum_probs=138.3
Q ss_pred ceEEECCCCC-ceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEE-EEecCccccceeeceEEEcCCceEEEEEEeCCC
Q 009242 192 DGVLINGQGH-TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 269 (539)
Q Consensus 192 ~~~liNG~~~-~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~v-ia~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~ 269 (539)
..++|||+.. |.|+++.|+++++++.|.....+ .+|.||....- -..||.. . ..-.|.||+++...+++++.
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~t-tIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~dq 122 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDEPL-LLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKDQ 122 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCc-cEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCCC
Confidence 4799999975 69999999999999999987544 78888865433 2469863 2 33589999999999999646
Q ss_pred CcceEEEEeeec-ccCccceEEEEEecCCCCCCCCCCCCCCC-cccccccccccccccccccCCCCCCCCCCcccccccc
Q 009242 270 PKDYYIVASTRF-TKNVLTATAILHYTNSHSPASGPLPTGPT-YEIHWSMKQARTFRWNLTANAARPNPQGSFHYGKINT 347 (539)
Q Consensus 270 ~g~~~~~~~~~~-~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~ 347 (539)
+|.||.|+|... ......+. ++.+.....+ .+.+. +. .+....+. + +.. . ... ..
T Consensus 123 ~GT~WYHsH~~~Q~~~Gl~Ga-lII~~~~~~~--~P~~~-~~~~e~~i~l~---D--W~~------~-~~~-------~~ 179 (596)
T PLN00044 123 VGSFFYAPSTALHRAAGGYGA-ITINNRDVIP--IPFGF-PDGGDITLFIA---D--WYA------R-DHR-------AL 179 (596)
T ss_pred CceeEeeccchhhhhCcCeeE-EEEcCccccc--ccccC-CcccceEEEec---c--ccc------C-CHH-------HH
Confidence 999999998542 11122222 3333211111 11111 00 01100000 0 000 0 000 00
Q ss_pred ceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEEEEEEEc
Q 009242 348 TRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIEVVFQN 427 (539)
Q Consensus 348 ~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve~~i~N 427 (539)
.+. +..... ........|||+.-....... . + ......++.++.|+++.|+|.|
T Consensus 180 ~~~--l~~g~~-~~~~d~~lING~g~~~~n~~~-----------~--------~----~~~~~~~i~V~~Gk~yRlRiIN 233 (596)
T PLN00044 180 RRA--LDAGDL-LGAPDGVLINAFGPYQYNDSL-----------V--------P----PGITYERINVDPGKTYRFRVHN 233 (596)
T ss_pred HHH--HhcCCC-CCCCCceEEcccCccccCCcc-----------c--------c----CCCccceEEECCCCEEEEEEEE
Confidence 000 000000 000011345664210000000 0 0 0011236889999999999999
Q ss_pred CC-CCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCc-e--eeE
Q 009242 428 NE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ-G--MWN 492 (539)
Q Consensus 428 ~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp-G--~w~ 492 (539)
.+ ....-|+|-||+|.|++.++. +..|..-|++.|.+|+++.|.++++.+ | .|+
T Consensus 234 aa~~~~~~fsIdgH~mtVIa~DG~-----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 234 VGVATSLNFRIQGHNLLLVEAEGS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ccCCceEEEEECCCEEEEEEeCCc-----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 87 566789999999999998643 235677899999999999999999974 5 465
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.78 E-value=1.6e-08 Score=86.40 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=69.0
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCC-ce
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG 489 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG 489 (539)
+++.++.|+.|++.+.|.....+.+|+||...- ...+..... ... .-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~-----~~~~~DG~~--~~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQP-----PSPWMDGVP--GVT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBST-----TGGGGSGGT--TTS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeee-----eeeecCCcc--ccc-------ceeEEeecceeeeEeeecccc
Confidence 468899999999999999888999999997631 111110000 000 124788999999999999 99
Q ss_pred eeEEEeechhhhhcccEEEEEEecC
Q 009242 490 MWNMRSAIWERQYLGQQFYLKVWNA 514 (539)
Q Consensus 490 ~w~~HCHil~H~d~GMm~~~~V~~~ 514 (539)
.|.||||...|...||...+.|+++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988878999999999775
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.68 E-value=2.6e-07 Score=79.38 Aligned_cols=74 Identities=24% Similarity=0.439 Sum_probs=56.1
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhcc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAA 138 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 138 (539)
-+.|++++||+ |+++|....++++.+.|.. ..... ...+.||++++|.|+. +|+|-|+|- .|..+
T Consensus 46 P~~i~v~~Gd~--V~~~N~~~~~H~v~~~~~~--~~~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDT--VKWVNNKLAPHNAVFDGAK--ELSHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCE--EEEEECCCCCceEEecCCc--ccccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 47899999998 5667887778888776531 00011 2357999999999983 799999998 55668
Q ss_pred ceeeEEEEe
Q 009242 139 GGYGGINIY 147 (539)
Q Consensus 139 Gl~G~liV~ 147 (539)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.52 E-value=1.6e-07 Score=78.75 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=46.7
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhcc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAA 138 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 138 (539)
...|++++|++|+|+++|.....+.+...++.. ...|.||++.++.|+ +.++|+|=|+|-.+..
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~~--- 97 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHPN--- 97 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS-T---
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCCc---
Confidence 358999999999999999987777776666422 256999999999998 4789999999997762
Q ss_pred ceeeEEEE
Q 009242 139 GGYGGINI 146 (539)
Q Consensus 139 Gl~G~liV 146 (539)
|.|.|+|
T Consensus 98 -m~G~liV 104 (104)
T PF13473_consen 98 -MKGTLIV 104 (104)
T ss_dssp -TB-----
T ss_pred -ceecccC
Confidence 6677765
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.47 E-value=1.7e-05 Score=85.14 Aligned_cols=226 Identities=17% Similarity=0.238 Sum_probs=140.3
Q ss_pred ceEEECCCCC-ceEEEecCCEEEEEEEecCCCCeeeEEEeCCee-EEEEecCccccceeeceEEEcCCceEEEEEEeCCC
Q 009242 192 DGVLINGQGH-TTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTM-KLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQP 269 (539)
Q Consensus 192 ~~~liNG~~~-~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~-~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~ 269 (539)
..++|||+.. |.|.++.|+++.++++|-.. ..+.+|.||-.. .--..||.++ ..=.|.|||.+...++.++.
T Consensus 48 ~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~q 121 (563)
T KOG1263|consen 48 QVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKDQ 121 (563)
T ss_pred eeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCCc
Confidence 5899999975 79999999999999999966 445666676432 2334499443 22358899999999999977
Q ss_pred CcceEEEEeeecccCccceEE-EEEecCCCCCCCCCCCCCCCcccc-----cccc-cccccccccccCCCCCCCCCCccc
Q 009242 270 PKDYYIVASTRFTKNVLTATA-ILHYTNSHSPASGPLPTGPTYEIH-----WSMK-QARTFRWNLTANAARPNPQGSFHY 342 (539)
Q Consensus 270 ~g~~~~~~~~~~~~~~~~~~a-il~y~~~~~~~~~~~p~~p~~~~~-----~~~~-~~~~l~~~l~~~~~~p~p~~~~~~ 342 (539)
.|+||.++|...-... ...+ ++.+.-...+ .+.+. |..+.. |-.+ ..+.++..+......|.
T Consensus 122 ~GT~~yh~h~~~~Ra~-G~~G~liI~~~~~~p--~pf~~-pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~------- 190 (563)
T KOG1263|consen 122 IGTLWYHSHVSWQRAT-GVFGALIINPRPGLP--VPFPK-PDKEFTILLGDWYKNLNHKNLKNFLDRTGALPN------- 190 (563)
T ss_pred ceeEEEeecccccccc-CceeEEEEcCCccCC--CCCCC-CCceeEEEeEeeccccCHHHHHHhhccCCCCCC-------
Confidence 9999999996532211 1222 3333222111 12221 211211 1110 11111111100000000
Q ss_pred cccccceEEEEcccccccCCeEEEEEcCeeecCCCCchhcccccCCCCccccCCCCCCCCCCCCCcceeEEEecCCcEEE
Q 009242 343 GKINTTRTIVLANSAPLINGKLRYAVNGISYVNSDTPLKLADYFNIPGIFSVNSIQSVPSGGASSVATSVMQVNLHEYIE 422 (539)
Q Consensus 343 ~~~~~~r~~~l~~~~~~~~~~~~~~iNg~~f~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~ve 422 (539)
..-...|||... ....|+..+++..|++..
T Consensus 191 -------------------~~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 191 -------------------PSDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred -------------------CCCceEECCCCC-------------------------------cccCceeEEEEcCCCEEE
Confidence 011245777641 123456778999999999
Q ss_pred EEEEcCC--CCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCC-ce-eeEEEee
Q 009242 423 VVFQNNE--KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN-QG-MWNMRSA 496 (539)
Q Consensus 423 ~~i~N~~--~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG-~w~~HCH 496 (539)
|+|.|.+ ...+ |.|-+|.+.|++.++. +..|..-|++.|-+|++..+-.+||. ++ .|+-=|=
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg~-----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVDGA-----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEecce-----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 9999976 3444 9999999999998643 23455669999999999999999997 65 3554443
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.33 E-value=2.6e-06 Score=70.69 Aligned_cols=81 Identities=19% Similarity=0.342 Sum_probs=57.4
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc---CCccCCCCeEEEEEEeCCCccceeEccCcchh
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT---NCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMH 135 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~---~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~ 135 (539)
...|++++||+| +++|....++++.++...... ...+..+.. ...+.||+++++.|.. +|+|.|||. .|
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H 87 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPA-GVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PH 87 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCcc-chhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Cc
Confidence 468999999985 666887778888776432110 000101110 2357899999999883 899999998 67
Q ss_pred hccceeeEEEEe
Q 009242 136 RAAGGYGGINIY 147 (539)
Q Consensus 136 ~~~Gl~G~liV~ 147 (539)
..+||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 888999999984
No 45
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.16 E-value=4e-06 Score=69.58 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=55.2
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCC-CCcc-cCCccCCCCeEEEEEEeCCCccceeEccCcchhh
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQD-GVLG-TNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHR 136 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~D-G~~~-~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 136 (539)
-+.|++++||+| ++.|....++++.+=--........+ ..+. ....+.||+++++.|+ .+|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-C-Cc
Confidence 478999999985 57776666777665321000000000 0000 0134789999999998 5899999999 4 88
Q ss_pred ccceeeEEEEe
Q 009242 137 AAGGYGGINIY 147 (539)
Q Consensus 137 ~~Gl~G~liV~ 147 (539)
.+||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 88999999995
No 46
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.10 E-value=1.1e-05 Score=73.29 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=77.2
Q ss_pred ceeEEEecCCcEEEEEEEcCC-CCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCC
Q 009242 409 ATSVMQVNLHEYIEVVFQNNE-KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDN 487 (539)
Q Consensus 409 ~~~~~~~~~g~~ve~~i~N~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 487 (539)
....+.++.|+++.|+|.|.+ ...+.|++.||+|+|++.++... .|...|++.|.+|+.+.|.++++.
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~ 126 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQ 126 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECS
T ss_pred ccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCC
Confidence 345688999999999999987 45799999999999999865432 266789999999999999999998
Q ss_pred -ceeeEEEe----echhhhhcccEEEEEEec
Q 009242 488 -QGMWNMRS----AIWERQYLGQQFYLKVWN 513 (539)
Q Consensus 488 -pG~w~~HC----Hil~H~d~GMm~~~~V~~ 513 (539)
+|.|.++| +...+...++...+.+.+
T Consensus 127 ~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 127 PPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 556778888887776543
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.05 E-value=2e-05 Score=70.12 Aligned_cols=90 Identities=8% Similarity=0.008 Sum_probs=59.3
Q ss_pred eEEEecCCcEEEEEEEcCCC-CCCceeecCCceEEEeeccCcCCcccccccCCC-CCCcceEEEeCC---C--cEEEEEE
Q 009242 411 SVMQVNLHEYIEVVFQNNEK-TMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLA-DTLTRHTAQVYP---Q--SWTVILV 483 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~-~p~~rDTv~vpp---~--g~~~irf 483 (539)
+.+.++.|+.|++++.|.+. ..|.|-||.+.- .+... .+.. .+..-..-.+|+ + ++..+.|
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~----p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYM----PGMDGLGFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccc----cccCCCCccccCcccCCCCCCccceeEEEE
Confidence 45789999999999999864 667777764321 11000 0000 011111222232 2 2468899
Q ss_pred EeCCceeeEEEeechhhhhcccEEEEEEe
Q 009242 484 SLDNQGMWNMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 484 ~adnpG~w~~HCHil~H~d~GMm~~~~V~ 512 (539)
+|+.+|.+.||||+..|...||...+.|+
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 99999999999999999999999999873
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.04 E-value=2.1e-05 Score=84.18 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=69.0
Q ss_pred EeecCCCeeeE--EEEECCCCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEE
Q 009242 39 GTLSPLGVPQE--VILINGQFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYK 116 (539)
Q Consensus 39 ~~~~~~G~~~~--~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~ 116 (539)
..+..+|.+.+ +.+..-.+--+.|+|++||+|.++++|.-...-.+ ||.....- | +...+.||++.+..
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----n---I~~dv~PG~t~svt 602 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----G---VNMEVAPQATASVT 602 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----C---ccEEEcCCceEEEE
Confidence 44556775555 44555566556899999999999999953211122 55533210 1 13557899999999
Q ss_pred EEeCCCccceeEccCcc-hhhccceeeEEEEec
Q 009242 117 FQTKDQIGSYFYFPSTL-MHRAAGGYGGINIYQ 148 (539)
Q Consensus 117 ~~~~~~~Gt~wYH~H~~-~~~~~Gl~G~liV~~ 148 (539)
|++ +++|+|||||..- ...-.+|.|.++|++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEe
Confidence 995 7899999999864 222238999999986
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.02 E-value=2.6e-05 Score=62.34 Aligned_cols=74 Identities=18% Similarity=0.206 Sum_probs=53.0
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhcc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAA 138 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~ 138 (539)
-+.|++++||+| +++|....++++++....- ...+ .- ...+.||+++++.|+ ++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~---~~~~-~~--~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVL---GEAA-LK--GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCC---cccc-cc--ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 478999999995 5789877888888765310 0111 00 123678888888775 5899999998765
Q ss_pred ceeeEEEEe
Q 009242 139 GGYGGINIY 147 (539)
Q Consensus 139 Gl~G~liV~ 147 (539)
.|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 399999985
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.87 E-value=0.00022 Score=65.13 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=72.2
Q ss_pred EEEECCCCC-CceEEEEcCCEEEEEEEECCCCCceeee--CCcCC--CCCCCCCCC----cc----c--CCccCCCCeEE
Q 009242 50 VILINGQFP-GPRLDVVTNDNIILNVINKLDQPFLLTW--NGIKQ--RKNSWQDGV----LG----T--NCPIPPNSNYT 114 (539)
Q Consensus 50 ~~~~nG~~p-gP~i~v~~Gd~v~i~~~N~l~~~~~iH~--HG~~~--~~~~~~DG~----~~----~--~~~i~pG~~~~ 114 (539)
.+.|||..- -++|.+..|-+|.|+|+|.-..+|++-. -+..+ ......||. +| . ...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 577888764 4899999999999999998655554322 11110 112334553 11 1 24688999998
Q ss_pred EEEEeCCCccceeEccCcchhhccceeeEEEEecCC
Q 009242 115 YKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRP 150 (539)
Q Consensus 115 y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~ 150 (539)
-.|. +-++|+|||-|-...|..+||++-|+|...-
T Consensus 155 ~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 155 GVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEc-cCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 7775 3569999999999999999999999998743
No 51
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.85 E-value=0.00042 Score=61.88 Aligned_cols=96 Identities=15% Similarity=0.145 Sum_probs=71.4
Q ss_pred EEEECCCCCC-ceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCC-------CCCCCC----ccc------CCccCCCC
Q 009242 50 VILINGQFPG-PRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKN-------SWQDGV----LGT------NCPIPPNS 111 (539)
Q Consensus 50 ~~~~nG~~pg-P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~-------~~~DG~----~~~------~~~i~pG~ 111 (539)
.+.|||+..| |+|.+..|=+|.|+|+|.-..++++-. -+..+ ...||. +|. -.-|.+|+
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3677887765 799999999999999999877766544 11111 234664 221 13466888
Q ss_pred eEEEEEEeCCCccceeEccCcchhhccceeeEEEEecC
Q 009242 112 NYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQR 149 (539)
Q Consensus 112 ~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 149 (539)
+..-.|+ +-++|+|||-|-.-.|..+||+|-+||...
T Consensus 151 s~sg~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEec-cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 8555555 568999999999999999999999999874
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.63 E-value=0.00027 Score=60.54 Aligned_cols=75 Identities=23% Similarity=0.245 Sum_probs=56.9
Q ss_pred ceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhccc
Q 009242 60 PRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAG 139 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~G 139 (539)
-.|+|++||+ |++.|.....++++.-+.- ..+|.- .....+|+++++.|.. +|+|-|+|-. |..+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe~---~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFET---PGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEecc---cceEEEEecc--CCCCC
Confidence 4799999999 8899998878888776642 112221 2455667888888873 8999999984 46789
Q ss_pred eeeEEEEec
Q 009242 140 GYGGINIYQ 148 (539)
Q Consensus 140 l~G~liV~~ 148 (539)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.62 E-value=0.00024 Score=58.83 Aligned_cols=83 Identities=16% Similarity=0.081 Sum_probs=58.8
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
..+.++.|++|+|+ |.+...|-+.++...+..-. . ........+++.+.||+...+.|.. +|.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGV---K----------ELAKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccch---h----------hhcccccccccccCCCCEEEEEeCC--CEE
Confidence 45789999998885 77777888887644321100 0 0001123467788999998886665 999
Q ss_pred eEEEeechhhhhcccEEEEEEe
Q 009242 491 WNMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 491 w~~HCHil~H~d~GMm~~~~V~ 512 (539)
|.|||- -|...||...+.|.
T Consensus 80 y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEEcC--CccccCCEEEEEEC
Confidence 999998 69999999999873
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.61 E-value=0.00026 Score=61.07 Aligned_cols=59 Identities=14% Similarity=0.284 Sum_probs=50.5
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.++.|+.|+|++.|.+...|.+-++++.+ ...++||+...|+|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 4789999999999999998888877776521 2367889999999999999999
Q ss_pred EEEeec
Q 009242 492 NMRSAI 497 (539)
Q Consensus 492 ~~HCHi 497 (539)
-|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999986
No 55
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.59 E-value=0.00042 Score=58.78 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.0
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeee-CCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTW-NGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRA 137 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 137 (539)
...|+|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|+ ++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4689999999955544443 466554 221 1122211 22246777777665 5899999998 6778
Q ss_pred cceeeEEEEecC
Q 009242 138 AGGYGGINIYQR 149 (539)
Q Consensus 138 ~Gl~G~liV~~~ 149 (539)
.||.|.++|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 899999999874
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.24 E-value=0.0018 Score=54.90 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=51.2
Q ss_pred CceEEEEcCCEEEEEEEECC-CCCceeeeCCcCCCCCCCCC-CCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhh
Q 009242 59 GPRLDVVTNDNIILNVINKL-DQPFLLTWNGIKQRKNSWQD-GVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHR 136 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l-~~~~~iH~HG~~~~~~~~~D-G~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~ 136 (539)
...|+|++||+ |+++|+. ..++++..-+ ... .| + .....+|++|+|.|. ++|+|-|+|-. |.
T Consensus 41 P~~ltV~~GdT--Vtw~~~~d~~~HnV~s~~----~~~-f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~ 104 (115)
T TIGR03102 41 PPAIRVDPGTT--VVWEWTGEGGGHNVVSDG----DGD-LDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP--HE 104 (115)
T ss_pred CCEEEECCCCE--EEEEECCCCCCEEEEECC----CCC-cccc----ccccCCCCEEEEEec---CCcEEEEEccC--CC
Confidence 46799999999 5577654 4667765421 001 11 1 134578999999996 48999999984 45
Q ss_pred ccceeeEEEEe
Q 009242 137 AAGGYGGINIY 147 (539)
Q Consensus 137 ~~Gl~G~liV~ 147 (539)
..||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 66899999984
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.99 E-value=0.0061 Score=50.42 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=55.6
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCccc-ccccCCCCCCcceEEEeCCCcEEEEEEEeCCc
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEK-RRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ 488 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 488 (539)
...+.++.|++|.|+.. +...|.+.+= . + ...... ...... .-.+..+.+|....+.|. .+
T Consensus 16 P~~i~V~~G~tV~~~n~--~~~~Hnv~~~-------~-~--~~~~~~~~~~~~~----~~~~~~~~~G~~~~~tF~--~~ 77 (99)
T PF00127_consen 16 PSEITVKAGDTVTFVNN--DSMPHNVVFV-------A-D--GMPAGADSDYVPP----GDSSPLLAPGETYSVTFT--KP 77 (99)
T ss_dssp SSEEEEETTEEEEEEEE--SSSSBEEEEE-------T-T--SSHTTGGHCHHST----TCEEEEBSTTEEEEEEEE--SS
T ss_pred CCEEEECCCCEEEEEEC--CCCCceEEEe-------c-c--cccccccccccCc----cccceecCCCCEEEEEeC--CC
Confidence 34588999999888544 5566766552 2 1 110000 000111 116677888988888777 99
Q ss_pred eeeEEEeechhhhhcccEEEEEEe
Q 009242 489 GMWNMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 489 G~w~~HCHil~H~d~GMm~~~~V~ 512 (539)
|.|.|+|- - |...||-..+.|+
T Consensus 78 G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 78 GTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEEET-T-TGGTTSEEEEEEE
T ss_pred eEEEEEcC-C-CcccCCEEEEEEC
Confidence 99999999 4 9999999999884
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.95 E-value=0.0032 Score=52.63 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=43.3
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.++.|+.+.+++.|.+...|-|.+-+.. -...++||+...+.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~---------------------------~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDLG---------------------------ISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGGT---------------------------EEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCCc---------------------------eEEEECCCCEEEEEEcCCCCEEE
Confidence 578999999999999998776666554411 23688899999999999999999
Q ss_pred EEEeechhhhh
Q 009242 492 NMRSAIWERQY 502 (539)
Q Consensus 492 ~~HCHil~H~d 502 (539)
-|||-+ |..
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999996 554
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.97 E-value=0.033 Score=47.69 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=51.4
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.++.|++|+| .|.+...|.+.+.+... + ...-..+.||+...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~---------~--------------~~~~~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKW--VNNKLAPHNAVFDGAKE---------L--------------SHKDLAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEE--EECCCCCceEEecCCcc---------c--------------cccccccCCCCEEEEEecC--CEEE
Confidence 478899999888 57777788876542210 0 0011346778887766664 9999
Q ss_pred EEEeechhhhhcccEEEEEEe
Q 009242 492 NMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V~ 512 (539)
.|+|= -|...||-..+.|+
T Consensus 101 ~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEcC--CCccCCcEEEEEEC
Confidence 99997 59999999999883
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.89 E-value=0.033 Score=60.23 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=56.7
Q ss_pred EEEecCCcEEEEEEEcCC---CCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCc
Q 009242 412 VMQVNLHEYIEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ 488 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 488 (539)
-+.++.|+.|++++.|.+ +..|-|-|-++.. -+.+.||....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 477999999999999974 5677777744431 1255689999999999999
Q ss_pred eeeEEEeechhhh-hcccEEEEEEec
Q 009242 489 GMWNMRSAIWERQ-YLGQQFYLKVWN 513 (539)
Q Consensus 489 G~w~~HCHil~H~-d~GMm~~~~V~~ 513 (539)
|.|.+||...-|. |.+|...+.|++
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEEe
Confidence 9999999874322 347887777753
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.56 E-value=0.079 Score=45.02 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCcEEEEEEEeCCceeeEEEeechhhhhcccEEEEEEecCcccC
Q 009242 475 PQSWTVILVSLDNQGMWNMRSAIWERQYLGQQFYLKVWNAVHSL 518 (539)
Q Consensus 475 p~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~ 518 (539)
++.. +.++++.+|.|-|+|= .|...||-..+.|.++...+
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~ 93 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANL 93 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCH
Confidence 3444 4566678999999999 59999999999999875444
No 62
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.55 E-value=0.082 Score=42.05 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.+..|+.|.| .|.+...|-++++...+ +..+ + ....+.++.... ++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~-~~~~~~~g~~~~--~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------L-KGPMMKKEQAYS--LTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------c-cccccCCCCEEE--EECCCCEEE
Confidence 478999999888 67777889888753221 0000 1 111234555544 566889999
Q ss_pred EEEeechhhhhcccEEEEEEe
Q 009242 492 NMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V~ 512 (539)
.|||=+ |- .|-..+.|+
T Consensus 67 ~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred EEEcCC--CC--CCeEEEEEC
Confidence 999997 55 588888773
No 63
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.77 E-value=0.19 Score=43.09 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=51.6
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRA 137 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 137 (539)
.+.|.+..|++|++++++. +.-+++...++.. +.-+-||+.....|++ +++|+|++.|..- ...-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 5789999999999999996 4444444443321 3457899999999996 7899999999854 2333
Q ss_pred cceeeEEEE
Q 009242 138 AGGYGGINI 146 (539)
Q Consensus 138 ~Gl~G~liV 146 (539)
..|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 346676665
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.06 E-value=0.56 Score=48.11 Aligned_cols=77 Identities=17% Similarity=0.104 Sum_probs=52.7
Q ss_pred CCCCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc--CCccCCCCeEEEEEEeCCCccceeEccCcc
Q 009242 56 QFPGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT--NCPIPPNSNYTYKFQTKDQIGSYFYFPSTL 133 (539)
Q Consensus 56 ~~pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~ 133 (539)
.+--..+.|+.|+ +.+.++|....++.+-.- +|+..+ .-.|.||.+..+.+++ .+|+|-|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 3434678999996 899999997655332110 121111 2479999999988876 599999999432
Q ss_pred hhhccceeeEEEEecC
Q 009242 134 MHRAAGGYGGINIYQR 149 (539)
Q Consensus 134 ~~~~~Gl~G~liV~~~ 149 (539)
..+.|.|+|.+.
T Consensus 107 ----~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 ----TNPKGKLIVKGE 118 (375)
T ss_pred ----CCCCceEEEeCC
Confidence 234789999864
No 65
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.79 E-value=0.37 Score=40.99 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=54.4
Q ss_pred CceEEEEc-CCEEEEEEEECCCCCceeeeCCcCCC--------------CCCCCCCCc----cc---CCccCCCCeEEEE
Q 009242 59 GPRLDVVT-NDNIILNVINKLDQPFLLTWNGIKQR--------------KNSWQDGVL----GT---NCPIPPNSNYTYK 116 (539)
Q Consensus 59 gP~i~v~~-Gd~v~i~~~N~l~~~~~iH~HG~~~~--------------~~~~~DG~~----~~---~~~i~pG~~~~y~ 116 (539)
-..|.|++ |..|.|+|+|....+-..--|-+-.. .....|=+| .+ -..|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 45799998 48999999998533322111211000 001111122 11 3458999999999
Q ss_pred EEeCC-Cccc-eeEccCcchhhccceeeEEE
Q 009242 117 FQTKD-QIGS-YFYFPSTLMHRAAGGYGGIN 145 (539)
Q Consensus 117 ~~~~~-~~Gt-~wYH~H~~~~~~~Gl~G~li 145 (539)
|+++. ++|+ |-|-|-+..|.. .|.|.|.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99753 5776 999999887776 5888875
No 66
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.52 E-value=0.65 Score=43.70 Aligned_cols=77 Identities=17% Similarity=0.156 Sum_probs=54.9
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRA 137 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 137 (539)
...|.+..|+.|++++++.. .+ ||..... . +++.-+-||..-+..|++ +++|+|...|..- ....
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~---~----~~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVPE---L----GGKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hcccccc---c----CceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 46899999999999999852 22 5543311 1 113446799999999985 7899999999853 2233
Q ss_pred cceeeEEEEecC
Q 009242 138 AGGYGGINIYQR 149 (539)
Q Consensus 138 ~Gl~G~liV~~~ 149 (539)
+.|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 568899988864
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.31 E-value=0.26 Score=43.42 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=65.3
Q ss_pred EEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceeeE
Q 009242 413 MQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMWN 492 (539)
Q Consensus 413 ~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (539)
+.++.|+++..++.|.....|=|=+= ++....+ .+.-. ....-..-....++.|-||.+..+-+.+.++|.|-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHh--hhCCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 46788999999999988776655443 1111110 00000 00000111234789999999999999999999999
Q ss_pred EEeechhhhhcccEEEEEEe
Q 009242 493 MRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V~ 512 (539)
+-|=|-.|-+.||-..+.|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999873
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.99 E-value=1.4 Score=37.81 Aligned_cols=76 Identities=8% Similarity=0.048 Sum_probs=54.8
Q ss_pred ceeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCc
Q 009242 409 ATSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQ 488 (539)
Q Consensus 409 ~~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 488 (539)
..+.+.++.|+.+.+.+.+.+ -.|.|.+-..... +.+.||....+.|+++.|
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~ 95 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSED-VIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKP 95 (120)
T ss_dssp BSSEEEEETTSEEEEEEEESS-S-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSS
T ss_pred ccceecccccceEeEEEEcCC-ccccccccccCcc---------------------------cccccccceeeeeeeccC
Confidence 345688999999999999965 4577766443321 245678999999999999
Q ss_pred eeeEEEeechh-hhhcccEEEEEEe
Q 009242 489 GMWNMRSAIWE-RQYLGQQFYLKVW 512 (539)
Q Consensus 489 G~w~~HCHil~-H~d~GMm~~~~V~ 512 (539)
|.|-..|..+= .-+..|...+.|+
T Consensus 96 G~y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 96 GTYYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEEEE-SSSSTTGGG-EEEEEEE
T ss_pred CcEEEcCccccCcCcCCCeEEEEEC
Confidence 99999999864 4556676677663
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.93 E-value=0.77 Score=38.91 Aligned_cols=73 Identities=11% Similarity=0.032 Sum_probs=47.0
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.++.|+.|.|+.++ +...|-.. +.+.+.|+. ......+++...+.| +.||.|
T Consensus 43 ~ltV~~GdTVtw~~~~-d~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf--~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTG-EGGGHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF--EEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEECC-CCCCEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--cCCcEE
Confidence 4789999999994332 23445432 222222321 111234566665555 789999
Q ss_pred EEEeechhhhhcccEEEEEEe
Q 009242 492 NMRSAIWERQYLGQQFYLKVW 512 (539)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V~ 512 (539)
-|+|=. |...||-..+.|+
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999995 9999999999883
No 70
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=92.86 E-value=1.2 Score=39.31 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=64.0
Q ss_pred CCCCceEEEEcCCEEEEEEEECCC--CCceee---------eCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCcc
Q 009242 56 QFPGPRLDVVTNDNIILNVINKLD--QPFLLT---------WNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIG 124 (539)
Q Consensus 56 ~~pgP~i~v~~Gd~v~i~~~N~l~--~~~~iH---------~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~G 124 (539)
.+++-.+.++.|++++..+.|... ...++- .|.... ..+++--.-...+.||++-+..|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 346778999999999999999752 222221 122211 1222211113569999999999997 5699
Q ss_pred ceeEccCcchhhccceeeEEEEec
Q 009242 125 SYFYFPSTLMHRAAGGYGGINIYQ 148 (539)
Q Consensus 125 t~wYH~H~~~~~~~Gl~G~liV~~ 148 (539)
.|-+-|-...|+..||.|-|-|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998863
No 71
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=92.15 E-value=0.82 Score=39.38 Aligned_cols=74 Identities=11% Similarity=-0.001 Sum_probs=49.1
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.++++.|++|+| .|.+...|-.+.=+-. ++..-+++..-++..... .++.||.|
T Consensus 55 ~v~v~pGDTVtw--~~~d~~~Hnv~~~~~~----------------------~~~g~~~~~~~~~~s~~~--Tfe~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTW--VNTDSVGHNVTAVGGM----------------------DPEGSGTLKAGINESFTH--TFETPGEY 108 (128)
T ss_pred EEEECCCCEEEE--EECCCCCceEEEeCCC----------------------CcccccccccCCCcceEE--EecccceE
Confidence 367899999999 7776666765542221 111123333333455554 44559999
Q ss_pred EEEeechhhhhcccEEEEEEec
Q 009242 492 NMRSAIWERQYLGQQFYLKVWN 513 (539)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V~~ 513 (539)
-|.|=. |..+||-..+.|.+
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999987 99999999998854
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=90.70 E-value=1.2 Score=41.84 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=57.5
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.++.|+.|++.+.+.+- .|.|.+ -+-+ --..+-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-~Hsf~i-------p~~~--------------------~k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-IHSFWV-------PELG--------------------GKIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-hhcccc-------cccC--------------------ceEEecCCcEEEEEEEeCCCEE
Confidence 35789999999999998763 354444 2221 1123557889999999999999
Q ss_pred eEEEeechh-hhhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
+...|-..- ..+..|...++|+++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 999999743 33588889999888754
No 73
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=89.73 E-value=1.5 Score=42.59 Aligned_cols=78 Identities=6% Similarity=-0.063 Sum_probs=59.7
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRA 137 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 137 (539)
...|.+..|.+|+++++-. +.-+++...++.. +.-.-||...+..++ ++++|+|.-+|+.- ....
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~-~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLT-ANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEe-cCCCeEEEEEcHhhcCCCc
Confidence 4899999999999999877 4444444444421 345678988899888 47899999999865 5556
Q ss_pred cceeeEEEEecCC
Q 009242 138 AGGYGGINIYQRP 150 (539)
Q Consensus 138 ~Gl~G~liV~~~~ 150 (539)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999854
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=89.05 E-value=2 Score=41.69 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=58.4
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.|++.+...+- .|. |+|-+-+ --+.+-||-...+.++++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DV-iHs-------F~IP~l~--------------------~k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADV-IHS-------FWIPQLG--------------------GKIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEechh-cee-------EEecCCC--------------------ceeeecCCceEEEEEecCCCe
Confidence 455789999999998888753 344 5554332 223445788889999999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.|-.+|+.+- .-+..|-..+.|+.+++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999875 55667777888877766
No 75
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=87.40 E-value=11 Score=34.90 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=58.9
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCc-----ccccc-cCCCCCCcceEEEeCCCcEEEEEEE
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAA-----EKRRT-YNLADTLTRHTAQVYPQSWTVILVS 484 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~-----~~~~~-~~~~~p~~rDTv~vpp~g~~~irf~ 484 (539)
-.+.++.|-.|.+++.|.+.+.|- |-|+..+...... +.... +--..+.--..--+++|.....-+.
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l~Hn-------l~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~ 158 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESLPHN-------LVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYN 158 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCCCee-------EEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEc
Confidence 346789998899999999888765 4555433211100 00000 0000000000112335666655565
Q ss_pred eCCceeeEEEeechhhhhcccEEEEEEecC
Q 009242 485 LDNQGMWNMRSAIWERQYLGQQFYLKVWNA 514 (539)
Q Consensus 485 adnpG~w~~HCHil~H~d~GMm~~~~V~~~ 514 (539)
.-.+|.|.+=|=+.-|...||-..+.|-+.
T Consensus 159 ~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 159 DLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 556999999999999999999999998654
No 76
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=85.56 E-value=1.1 Score=46.08 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=52.7
Q ss_pred ceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhcc
Q 009242 60 PRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRAA 138 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 138 (539)
-++.|++||.|.+.++|-......+ ||.-.. +-|+ ...+.|-++-.|.|.+ +.+|-+||.|--. .-+.+
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 4678888888888888876444333 343111 1122 2568899999999996 6799999998654 33444
Q ss_pred ceeeEEEEe
Q 009242 139 GGYGGINIY 147 (539)
Q Consensus 139 Gl~G~liV~ 147 (539)
-|.|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 577888876
No 77
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=84.39 E-value=11 Score=29.69 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=37.5
Q ss_pred EEEEEEecCCCCeeeEEEe-CCeeE--EEEecCcccc--------ceeeceEEEcCCceEEEEEEeCCC---CcceEEEE
Q 009242 212 YMFRISNVGLSTSFNFRIQ-GHTMK--LVEVEGSHTI--------QNIYDSLDVHVGQSVSVLVTLNQP---PKDYYIVA 277 (539)
Q Consensus 212 ~rlRliN~~~~~~~~~~l~-gh~~~--via~DG~~~~--------p~~~d~l~l~pg~R~dv~v~~~~~---~g~~~~~~ 277 (539)
..|.+.|.+... ..|.+. |+++. |...+|..+- -+...+..|.|||...+-...+.. ||.|.+.+
T Consensus 4 ~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 578888888854 467764 66544 4444666552 123568999999999999988763 79998753
No 78
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=82.00 E-value=9.1 Score=32.73 Aligned_cols=76 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred eEEEec-CCEEEEEEEecCCCC----eeeEEEe-CCeeEEEE-------ecCccccc----eeeceEEEcCCceEEEEEE
Q 009242 203 TFNGDQ-GKTYMFRISNVGLST----SFNFRIQ-GHTMKLVE-------VEGSHTIQ----NIYDSLDVHVGQSVSVLVT 265 (539)
Q Consensus 203 ~l~v~~-G~~~rlRliN~~~~~----~~~~~l~-gh~~~via-------~DG~~~~p----~~~d~l~l~pg~R~dv~v~ 265 (539)
.|+|++ ++.+.+.|-|.|... .|++-|- .-.++-|+ .|-.++.+ +...|=+|++||..+|.++
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~ 96 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFD 96 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEE
Confidence 688988 478999999998643 2344442 12222222 24444532 2345778999999999999
Q ss_pred eCC-CCc-ceEEEEe
Q 009242 266 LNQ-PPK-DYYIVAS 278 (539)
Q Consensus 266 ~~~-~~g-~~~~~~~ 278 (539)
++. .+| +|.+.|+
T Consensus 97 ~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 97 VSKLSAGEDYTFFCS 111 (125)
T ss_pred CCCCCCCCcceEEEc
Confidence 864 456 6999997
No 79
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=79.85 E-value=20 Score=36.37 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.9
Q ss_pred CCccCCCCeEEEEEEeC
Q 009242 104 NCPIPPNSNYTYKFQTK 120 (539)
Q Consensus 104 ~~~i~pG~~~~y~~~~~ 120 (539)
+.+|.|||+.+.+.++.
T Consensus 337 ~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 337 QSAIAPGETVEVKMEAK 353 (399)
T ss_pred CCCcCCCcceEEEEEEe
Confidence 57899999999999873
No 80
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=75.87 E-value=26 Score=31.93 Aligned_cols=96 Identities=10% Similarity=-0.034 Sum_probs=57.1
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccC-cCCcc---cccccCCC--CCCcceEEEeCCCcEEEEEEE
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSG-QWAAE---KRRTYNLA--DTLTRHTAQVYPQSWTVILVS 484 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g-~~~~~---~~~~~~~~--~p~~rDTv~vpp~g~~~irf~ 484 (539)
..+-++.|-.|.+++.|.+.+.|-+= |+..+.. +..+. +...+++. .+.--..=-+.+|.....-+.
T Consensus 85 mtIyiPaGw~V~V~f~N~e~~pHnl~-------iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~ 157 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYESLPHNLK-------LLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWN 157 (195)
T ss_pred eEEEEeCCCEEEEEEEcCCCCCccEE-------EecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEec
Confidence 45778999999999999988776544 3333211 11100 00000000 000000011223555555566
Q ss_pred eCCceeeEEEeechhhhhcccEEEEEEec
Q 009242 485 LDNQGMWNMRSAIWERQYLGQQFYLKVWN 513 (539)
Q Consensus 485 adnpG~w~~HCHil~H~d~GMm~~~~V~~ 513 (539)
.-.||.+.+=|=+.-|...||-..+.|-+
T Consensus 158 ~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 158 DTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 66799999999999999999999888744
No 81
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=72.31 E-value=4.2 Score=34.11 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=32.5
Q ss_pred EEEEEECCCCCc---eeeeCCcCCCC---CCCCCCCcccCCccCCCCeEEEEEEe--CCCccc
Q 009242 71 ILNVINKLDQPF---LLTWNGIKQRK---NSWQDGVLGTNCPIPPNSNYTYKFQT--KDQIGS 125 (539)
Q Consensus 71 ~i~~~N~l~~~~---~iH~HG~~~~~---~~~~DG~~~~~~~i~pG~~~~y~~~~--~~~~Gt 125 (539)
.|++.|....+. +=|||=-...+ ...-+||-|-|..|.||++|+|.=-+ ....|+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 377788775443 66888321111 11234444448899999999997432 334565
No 82
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=71.56 E-value=23 Score=31.76 Aligned_cols=78 Identities=9% Similarity=0.102 Sum_probs=53.5
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.++.|..+++.++..+-. |.|.+ -+.+ ...|. -||....+.+.++.+|.
T Consensus 73 n~LvLP~g~~Vr~~lTS~DVI-HSF~V-------P~lg-----------------vK~Da---vPGr~n~l~~~~~~~G~ 124 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDVI-HSWSV-------PSLG-----------------IKADA---IPGRLHKINTFILREGV 124 (162)
T ss_pred CCEEEeCCCEEEEEEEeCccc-eeeec-------cccC-----------------ceeec---cCCceEEEEEecCCCeE
Confidence 346789999999988877543 55544 2221 12233 36778888999999999
Q ss_pred eEEEeechh-hhhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
|...|.-+- --+..|-..++|+.+++
T Consensus 125 y~gqCsElCG~gHs~M~~~V~vvs~~~ 151 (162)
T PTZ00047 125 FYGQCSEMCGTLHGFMPIVVEAVSPEA 151 (162)
T ss_pred EEEEcchhcCcCccCceEEEEEeCHHH
Confidence 999999763 23355777777777654
No 83
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=70.21 E-value=15 Score=35.11 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=56.6
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
-+.++.|+.|++.++..+-. | .|+|-+-+ .++|.+ ||-...+.|+++.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DVi-H-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM-N-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECchh-h-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeCCCEEE
Confidence 36789999999999887633 4 45554432 234554 68888999999999999
Q ss_pred EEEeechh-hhhcccEEEEEEecCcc
Q 009242 492 NMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 492 ~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.-.|--.- -.+..|...++|+++++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 99998653 33577888888877654
No 84
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=68.97 E-value=23 Score=33.95 Aligned_cols=79 Identities=8% Similarity=0.040 Sum_probs=56.9
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.|++.+.+.+- .|. |+|-+-+. . +.+-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~DV-iHs-------f~ip~~~~-----------------k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSADV-IHS-------WTVPSLGV-----------------K---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCcc-ccc-------eeccccCc-----------------e---eECCCCcceeEEEEeCCCE
Confidence 345789999999999999753 344 44433221 1 2344788899999999999
Q ss_pred eeEEEeechhh-hhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWER-QYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 516 (539)
.+...|.-+-. -|..|-..++|.++++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHHH
Confidence 99999998753 3667777888877654
No 85
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=68.23 E-value=16 Score=37.19 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=32.3
Q ss_pred eeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCCc--------eeeeCCcCCCCC--CC------CCCCccc-CCccC
Q 009242 46 VPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQPF--------LLTWNGIKQRKN--SW------QDGVLGT-NCPIP 108 (539)
Q Consensus 46 ~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~~--------~iH~HG~~~~~~--~~------~DG~~~~-~~~i~ 108 (539)
.+.++-.-+=++||-++++ .++++|+.+.+. +++|=.-.+... .+ .+|.-.. ..+|+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 3344433344567777754 478888876554 333322211100 00 1111112 56899
Q ss_pred CCCeEEEEEEeC
Q 009242 109 PNSNYTYKFQTK 120 (539)
Q Consensus 109 pG~~~~y~~~~~ 120 (539)
|||+.+.+..+.
T Consensus 323 PGETrtl~V~a~ 334 (381)
T PF04744_consen 323 PGETRTLTVEAQ 334 (381)
T ss_dssp TT-EEEEEEEEE
T ss_pred CCceEEEEEEee
Confidence 999999999973
No 86
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.30 E-value=45 Score=31.10 Aligned_cols=76 Identities=8% Similarity=0.089 Sum_probs=54.5
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
.+.++.|+.+++.+...+ -.|.|.+- +-+ ..+|. -||....+.|.++.+|.+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp-------~l~-----------------~k~d~---~PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVP-------DLN-----------------LKMDA---IPGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceecc-------ccC-----------------ceeec---CCCceEEEEEEcCCCEEE
Confidence 467899999999888765 33554442 221 12333 378899999999999999
Q ss_pred EEEeechh-hhhcccEEEEEEecCc
Q 009242 492 NMRSAIWE-RQYLGQQFYLKVWNAV 515 (539)
Q Consensus 492 ~~HCHil~-H~d~GMm~~~~V~~~~ 515 (539)
-.-|.-+- =.+..|-..++|++++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 99999764 3356777888887764
No 87
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=65.89 E-value=24 Score=36.46 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=47.0
Q ss_pred eEEECCCCC-c-eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCC
Q 009242 193 GVLINGQGH-T-TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPP 270 (539)
Q Consensus 193 ~~liNG~~~-~-~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~ 270 (539)
.++|+.... | .++|++|+ ++|.+.|.+.... +|.++ +|..+. ...=.|.||.+..+.+.+ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~--------Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKAL--------EWEIL--KGVMVV---EERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCcc--------eEEee--cccccc---ccccccCCCCceEEEEec--CC
Confidence 356655443 3 78999996 8999999987653 33343 222110 011278999888888777 48
Q ss_pred cceEEEEe
Q 009242 271 KDYYIVAS 278 (539)
Q Consensus 271 g~~~~~~~ 278 (539)
|+|.+.|.
T Consensus 97 GtY~~~C~ 104 (375)
T PRK10378 97 GEYDMTCG 104 (375)
T ss_pred ceEEeecC
Confidence 99999994
No 88
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.16 E-value=55 Score=26.05 Aligned_cols=64 Identities=11% Similarity=0.084 Sum_probs=41.1
Q ss_pred CCceEEEE---cCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEc
Q 009242 58 PGPRLDVV---TNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYF 129 (539)
Q Consensus 58 pgP~i~v~---~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH 129 (539)
+.|.+.++ ....|.|+|.|.......+....... ..+.+ .+..|.||++.+..|.+. ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 35666555 23589999999987777766654211 11111 156799999999999873 3334554
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.18 E-value=1.5e+02 Score=28.38 Aligned_cols=77 Identities=10% Similarity=-0.002 Sum_probs=50.8
Q ss_pred CceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhc
Q 009242 59 GPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRA 137 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~ 137 (539)
...|.+..|..|++.+++.. .+ |+..++. - +++.-.-||..-...|++ +++|+|+-.|..- ....
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----Vi--Hsf~ip~----~---~~k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VI--HSWTVPS----L---GVKVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cc--cceeccc----c---CceeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 46799999999999999952 22 3332211 1 112335688888888885 7799999888753 3333
Q ss_pred cceeeEEEEecC
Q 009242 138 AGGYGGINIYQR 149 (539)
Q Consensus 138 ~Gl~G~liV~~~ 149 (539)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 447777777653
No 90
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=61.97 E-value=29 Score=33.01 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=56.5
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
-+.++.|+.|++.+...+- . |.|+|-+-+ .++|.+ ||-...+.|+++.||.|
T Consensus 131 ~l~iP~g~~v~~~ltS~DV-i-------Hsf~vP~l~-----------------~k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT-M-------TSFWIPQLG-----------------GQKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCch-h-------hhhhchhhC-----------------ceeecC---CCceEEEEEEeCCCEEE
Confidence 3678999999999988763 2 345553332 234554 68888999999999999
Q ss_pred EEEeechh-hhhcccEEEEEEecCcc
Q 009242 492 NMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 492 ~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
--.|=-+- =.+.-|-..++|+++++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 99997653 33567888888888765
No 91
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=60.23 E-value=52 Score=27.31 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=44.8
Q ss_pred EEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcchhhccceeeEEEEecC
Q 009242 71 ILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTLMHRAAGGYGGINIYQR 149 (539)
Q Consensus 71 ~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~ 149 (539)
.|+++|.|.....|..|=- + ...| .| ...+.||+++.++|.. +--|+--|.|+... ....-...+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~--S--~d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK--S--KDDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEee--C--CCcc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 5899999976666766643 1 1122 22 2458999999999984 44577677888776 11113566666553
No 92
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=56.22 E-value=67 Score=24.70 Aligned_cols=64 Identities=20% Similarity=0.317 Sum_probs=30.9
Q ss_pred EecCCEE--EEEEEecCCCCe--eeEEEeCCeeEEEEecCccc--cceeeceEEEcCCceEEEEEEeC--C--CCcceEE
Q 009242 206 GDQGKTY--MFRISNVGLSTS--FNFRIQGHTMKLVEVEGSHT--IQNIYDSLDVHVGQSVSVLVTLN--Q--PPKDYYI 275 (539)
Q Consensus 206 v~~G~~~--rlRliN~~~~~~--~~~~l~gh~~~via~DG~~~--~p~~~d~l~l~pg~R~dv~v~~~--~--~~g~~~~ 275 (539)
|.+|+.+ .+.+-|.+.... ..+++. .-+|-.+ .+.... .|.||+...+-++.. . .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3567764 777889886542 233332 2344332 233333 789998776666653 2 4799988
Q ss_pred EEe
Q 009242 276 VAS 278 (539)
Q Consensus 276 ~~~ 278 (539)
...
T Consensus 72 ~~~ 74 (78)
T PF10633_consen 72 TVT 74 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 93
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.50 E-value=1.1e+02 Score=24.30 Aligned_cols=65 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred EEecCCEE--EEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceE-EEcCCceEEEEEEeCC-CCcceEEEEe
Q 009242 205 NGDQGKTY--MFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSL-DVHVGQSVSVLVTLNQ-PPKDYYIVAS 278 (539)
Q Consensus 205 ~v~~G~~~--rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l-~l~pg~R~dv~v~~~~-~~g~~~~~~~ 278 (539)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....+ .|.||+...+.+.... .+|.|.+.+.
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~ 82 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVV 82 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence 45667765 667899988764444433 33455544 33445 7899999988888763 5788877765
No 94
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=53.74 E-value=45 Score=26.91 Aligned_cols=70 Identities=17% Similarity=0.063 Sum_probs=39.7
Q ss_pred EecCCEEEEEEE--ecCCCCeeeEEEeCCeeEEEEecCccccceeeceE-EEcCCceEEEEEEeCCC--CcceEEEEee
Q 009242 206 GDQGKTYMFRIS--NVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSL-DVHVGQSVSVLVTLNQP--PKDYYIVAST 279 (539)
Q Consensus 206 v~~G~~~rlRli--N~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l-~l~pg~R~dv~v~~~~~--~g~~~~~~~~ 279 (539)
-+|||++.+|++ +..+ ......-....++|..-+|..+. ...+ .......++..+.++.+ .|.|.++...
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 579999999988 7662 11011111223556655665442 2222 34677888888888753 5999998875
No 95
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=51.73 E-value=85 Score=23.49 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=34.8
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEe
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAS 278 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~ 278 (539)
.++++.|+++++.+-+.+. +..+.+...+|..+....... -..+..-.+.+... .+|.|.++..
T Consensus 6 ~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 6 SFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 6789999998888866654 112455555554332111111 11122233334555 6899988764
No 96
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=49.68 E-value=80 Score=30.25 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=55.6
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.++.|+.+++.++..+-. |.|+|-+-| .+.|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLG-----------------LKTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------ccccccccc-----------------cceecC---CCceEEEEEecCCcEE
Confidence 457889999999988887633 445554432 123433 6888889999999999
Q ss_pred eEEEeechhhh-hcccEEEEEEecCcc
Q 009242 491 WNMRSAIWERQ-YLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (539)
+..-|.-+-.. +.-|-..++|.++++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~~ 218 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLKY 218 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHHH
Confidence 99999876433 566777777777654
No 97
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=49.24 E-value=71 Score=25.19 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=28.0
Q ss_pred eEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCccc----CCccCCCCeEEEEEEeCCC---cccee
Q 009242 61 RLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGT----NCPIPPNSNYTYKFQTKDQ---IGSYF 127 (539)
Q Consensus 61 ~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~----~~~i~pG~~~~y~~~~~~~---~Gt~w 127 (539)
+|+...|++..+.|.|.-.+. .=-|++|..-. +..|.||++.+|++..+.. +|+|.
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~-----------vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE-----------VWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E-----------EEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE-----------EEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 455555555555555442111 01356665432 4579999999999998543 68875
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=48.91 E-value=21 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.435 Sum_probs=24.6
Q ss_pred EEEEEECCCCCc---eeeeC-----CcCCCCCCCCCCCcccCCccCCCCeEEEE
Q 009242 71 ILNVINKLDQPF---LLTWN-----GIKQRKNSWQDGVLGTNCPIPPNSNYTYK 116 (539)
Q Consensus 71 ~i~~~N~l~~~~---~iH~H-----G~~~~~~~~~DG~~~~~~~i~pG~~~~y~ 116 (539)
.|++.|..+.+. +=||- |-.+ .-..+||-|.|..|.||++|.|.
T Consensus 34 ~ItI~N~~~~~vQL~~R~W~I~d~~g~~~--~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 34 TITIENLGRVPVQLLSRHWLITDANGRVQ--EVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEECCCCCEEEEeeeEEEEECCCCEE--EEECCceecCCceECCCCCeEEe
Confidence 366777665443 33553 2111 11234554447779999988884
No 99
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.81 E-value=68 Score=30.79 Aligned_cols=79 Identities=11% Similarity=0.050 Sum_probs=57.6
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+-+.+|.|+.+++.+...+-. |.|+|-+-+. ..|. -||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da---~PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDA---VPGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------cccc---CCCceEEEEEEeCCce
Confidence 3457789999999988887633 5566655432 2333 3688888999999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.+...|.-+- -.+..|-..++|+++++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~~ 218 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHHH
Confidence 9999999763 34577778888877654
No 100
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.04 E-value=92 Score=29.87 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=55.3
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+-+.+|.|+.+++.+++.+- .| .|+|-+-|. ..| .-||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-iH-------sf~vP~~~~-----------------k~d---aiPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV-IH-------SWTVPSLGV-----------------KVD---AVPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc-cc-------cccccccCc-----------------cee---cCCCceEEEEEEeCCCEE
Confidence 45778999999999998753 34 444433321 123 337888889999999999
Q ss_pred eEEEeechhh-hhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWER-QYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~H-~d~GMm~~~~V~~~~~ 516 (539)
+.--|.-+-. .+.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHHH
Confidence 9999987643 3566777777777654
No 101
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=47.01 E-value=56 Score=32.93 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=54.8
Q ss_pred EEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCceee
Q 009242 412 VMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGMW 491 (539)
Q Consensus 412 ~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (539)
-+.++.|+.|++.+...+-+ | .|+|-+-+. ..|. -||-...+.|.++.||.|
T Consensus 152 eL~iP~g~pV~f~lTS~DVi-H-------SF~IP~Lg~-----------------K~da---mPG~~n~l~~~a~~~G~Y 203 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM-N-------SFFIPRLGS-----------------QIYA---MAGMQTRLHLIANEPGTY 203 (315)
T ss_pred cEEEecCCEEEEEEEEchhh-h-------hhhhhhhCC-----------------eeec---CCCceeEEEEEcCCCEEE
Confidence 36789999999999987643 3 455543321 2333 368889999999999999
Q ss_pred EEEeechh-hhhcccEEEEEEec-Ccc
Q 009242 492 NMRSAIWE-RQYLGQQFYLKVWN-AVH 516 (539)
Q Consensus 492 ~~HCHil~-H~d~GMm~~~~V~~-~~~ 516 (539)
.-.|-..- ..+..|...+.|.. +++
T Consensus 204 ~G~CaEyCG~gHs~M~f~v~v~~~~~~ 230 (315)
T PRK10525 204 DGISASYSGPGFSGMKFKAIATPDRAE 230 (315)
T ss_pred EEEChhhcCccccCCeEEEEEECCHHH
Confidence 99998764 44567777777763 444
No 102
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=45.13 E-value=1.1e+02 Score=29.58 Aligned_cols=79 Identities=9% Similarity=0.103 Sum_probs=56.1
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.+|.|+.+++.++..+ -.|.| +|-+-+ .++|.+ ||....+.|.++.||
T Consensus 150 ~n~lvlP~~~~v~~~~tS~D-ViHsf-------~iP~lg-----------------vK~Dai---PG~~n~~~~~~~~~G 201 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGAD-VLHSF-------AVPSLG-----------------LKIDAV---PGRLNQTGFFIKRPG 201 (240)
T ss_pred CceEEEecCCEEEEEEEcCC-cccce-------eecccC-----------------ceeecC---CCcceeEEEEcCCCE
Confidence 34578999999999888875 33444 443322 123443 677788899999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.+.-.|.-+- .-+.-|-..++|+++++
T Consensus 202 ~y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 202 VFYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEEchhhcCcCccCCeEEEEEECHHH
Confidence 9999999764 34567777888877654
No 103
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.08 E-value=1.1e+02 Score=29.43 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=55.6
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.+++.++..+-. |.|+|-+-| .+.|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALG-----------------VKMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccC-----------------ceeEec---CCceEEEEEEeCCcE
Confidence 3457789999999988887643 445554432 123433 688888899999999
Q ss_pred eeEEEeechhhh-hcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWERQ-YLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (539)
.+.--|.-+-.. +.-|-..++|.++++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHHH
Confidence 999999976433 456777777776544
No 104
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.80 E-value=40 Score=29.96 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=44.0
Q ss_pred cccCCCeEEEEEEEEEEeec--CCCeeeEEEEECCCC-CCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCC
Q 009242 23 VKADDPYRFYTWTVTSGTLS--PLGVPQEVILINGQF-PGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG 99 (539)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~--~~G~~~~~~~~nG~~-pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG 99 (539)
..+......|-+++++.... ..|+..++ .|.+ +|..-+. .|..++.+++-. .....++..|. .++.+.+|
T Consensus 27 ~~a~~~~~~yf~tpse~~~~~~~~g~~vrv---gG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg 99 (148)
T PRK13254 27 LYALRQNIVFFYTPSEVAEGEAPAGRRFRL---GGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREG 99 (148)
T ss_pred HHHHHhCCceeeCHHHHhcCCccCCCeEEE---eEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCC
Confidence 34444555677777665433 23444443 3433 4544443 777888888776 55668888897 55667777
Q ss_pred Cccc
Q 009242 100 VLGT 103 (539)
Q Consensus 100 ~~~~ 103 (539)
...+
T Consensus 100 ~~VV 103 (148)
T PRK13254 100 QGVV 103 (148)
T ss_pred CEEE
Confidence 6543
No 105
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.29 E-value=95 Score=29.68 Aligned_cols=79 Identities=6% Similarity=0.086 Sum_probs=56.3
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.+++.+...+- .| .|+|-+-+ .++|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DV-iH-------sf~vP~l~-----------------~K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAADV-LH-------SWTVPSLG-----------------VKIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCcc-cc-------ceeccccC-----------------ccccCC---CCcEEEEEEEcCCCE
Confidence 345789999999998887753 34 45554432 234554 578888999999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.+.--|--+- -.|.-|-..++|+++++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISPKF 218 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCHHH
Confidence 9999998763 34566777787777654
No 106
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=39.84 E-value=75 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=41.7
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
.+.++.|+.+||++-..... |.|.+. .-.-....-||..-.+.++++ .+|.|...|.-.
T Consensus 140 el~lP~g~pV~~~ltS~DVi--HSF~VP----------------~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSVM--NSFFIP----------------QLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred eEEEECCCEEEEEEEECchh--hhhhhh----------------hcCCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 67888898888887765543 344443 222333455899989999988 799999999743
No 107
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=39.77 E-value=2.2e+02 Score=23.75 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=13.2
Q ss_pred EEEEEecCCC-CeeeEEEeCCe
Q 009242 213 MFRISNVGLS-TSFNFRIQGHT 233 (539)
Q Consensus 213 rlRliN~~~~-~~~~~~l~gh~ 233 (539)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6788887775 34556555443
No 108
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.77 E-value=1.4e+02 Score=28.61 Aligned_cols=79 Identities=9% Similarity=0.062 Sum_probs=55.9
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.+++.+...+-. |.|+|-+-+ .+.|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDVL--------HSWAVPSLG-----------------VKTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecchh--------hcccccccC-----------------ceeEec---CCceEEEEEEEcccc
Confidence 3457889999999988887633 456554432 123443 688888999999999
Q ss_pred eeEEEeechhhh-hcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWERQ-YLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (539)
.+.--|--+--. |.-|-..++|+++++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLKH 218 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHHH
Confidence 999999876433 466666777776554
No 109
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.19 E-value=1.4e+02 Score=28.56 Aligned_cols=78 Identities=9% Similarity=0.080 Sum_probs=54.1
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.+|.|+.+++.++..+ -.|. |+|-+-| .+.|.+ ||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHs-------f~iP~lg-----------------~k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHS-------WAVPSLG-----------------VKMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-cccc-------ccccccC-----------------ceeecC---CCceEEEEEEcCCCEE
Confidence 4578999999999888775 3344 4443322 123443 6888889999999999
Q ss_pred eEEEeechhhh-hcccEEEEEEecCcc
Q 009242 491 WNMRSAIWERQ-YLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (539)
+.--|--+--. +.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFNT 218 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 99999876433 455666777766554
No 110
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.90 E-value=3.3e+02 Score=25.39 Aligned_cols=76 Identities=16% Similarity=0.023 Sum_probs=50.5
Q ss_pred ceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhcc
Q 009242 60 PRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRAA 138 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 138 (539)
-.+.+..|..|+++++-. +.-++....++. .+.-.-||..-...|+ ++++|+|.--|..- .....
T Consensus 116 ~~l~lp~g~~v~~~ltS~-DViHsf~vp~l~------------~k~d~~PG~~~~~~~~-~~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS-DVIHSFSVPDLN------------LKMDAIPGRINHLFFC-PDRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred ceEEEeCCCEEEeeeecC-ccccceeccccC------------ceeecCCCceEEEEEE-cCCCEEEEEEeehhhCcCcc
Confidence 348888999999988876 233333333221 1233458999888888 57899999888754 33344
Q ss_pred ceeeEEEEecC
Q 009242 139 GGYGGINIYQR 149 (539)
Q Consensus 139 Gl~G~liV~~~ 149 (539)
.|.+-+.|.++
T Consensus 182 ~M~~~v~v~~~ 192 (194)
T MTH00047 182 YMPIVIEVVDV 192 (194)
T ss_pred cCcEEEEEEcC
Confidence 57788887764
No 111
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.37 E-value=1.5e+02 Score=28.63 Aligned_cols=79 Identities=8% Similarity=0.057 Sum_probs=55.4
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.+++.+.+.+- .| .|.|-+-| .+.|. -||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~DV-iH-------sf~vp~lg-----------------~k~da---iPG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAADV-LH-------SFAVPSLS-----------------VKIDA---VPGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCch-hc-------cccccccC-----------------ceeEc---cCCceEeEEEEeCCCE
Confidence 345789999999999998753 34 44443332 12333 3678888899999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.+---|.-+- -.+.-|-..++|+++++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHHH
Confidence 9999998764 33566777777777654
No 112
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=37.16 E-value=2.1e+02 Score=27.21 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=61.5
Q ss_pred CCCeeeEEEEECCCCCCceEEEEcCCEEEEEEEECCCCC-----ceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEE
Q 009242 43 PLGVPQEVILINGQFPGPRLDVVTNDNIILNVINKLDQP-----FLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKF 117 (539)
Q Consensus 43 ~~G~~~~~~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~~~-----~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~ 117 (539)
++|..---+++.|.+---.|.|..|..+++++.=+.+-+ .+-.||+. ...+-+|....+|
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe~ 144 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIEF 144 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEEe
Confidence 444333335666666556899999999999999886433 23444443 3456788899999
Q ss_pred EeCCCccceeEccCcchhhccceeeEEEEecCCC
Q 009242 118 QTKDQIGSYFYFPSTLMHRAAGGYGGINIYQRPR 151 (539)
Q Consensus 118 ~~~~~~Gt~wYH~H~~~~~~~Gl~G~liV~~~~~ 151 (539)
+ +.+.|.|-+-|-.. -|.|.++|+.-.+
T Consensus 145 T-~~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 145 T-PISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred c-cccccchhhhcchh-----hccCeeEEEecCC
Confidence 9 68899998777643 2678999987543
No 113
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=36.92 E-value=1.3e+02 Score=25.22 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=27.0
Q ss_pred EEEEEEEecCCCC-eeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeC
Q 009242 211 TYMFRISNVGLST-SFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLN 267 (539)
Q Consensus 211 ~~rlRliN~~~~~-~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~ 267 (539)
.|+++|+|-+... .+.+.+.|.+ |..+. ...+.+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEEE
Confidence 4899999999876 4566666532 21121 134678899999887776553
No 114
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.69 E-value=3.9e+02 Score=25.61 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=46.4
Q ss_pred ceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCCCcccCCccCCCCeEEEEEEeCCCccceeEccCcc-hhhcc
Q 009242 60 PRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGSYFYFPSTL-MHRAA 138 (539)
Q Consensus 60 P~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~i~pG~~~~y~~~~~~~~Gt~wYH~H~~-~~~~~ 138 (539)
..+.+..|..|++.++-.. .+ |+..... - +++.-.-||..-...|.+ +++|+|+-.|..- ....+
T Consensus 140 n~lvlP~~~~v~~~~tS~D----Vi--Hsf~ip~----~---~~k~da~PG~~~~~~~~~-~~~G~~~g~C~e~CG~~H~ 205 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAED----VL--HSWAVPA----L---GVKMDAVPGRLNQTAFIA-SRPGVFYGQCSEICGANHS 205 (230)
T ss_pred ceEEEecCcEEEEEEEeCc----cc--cceeccc----c---CCccccCCCceEEEEEEe-CCceEEEEEChhhcccccc
Confidence 4677888888888877652 22 3332211 1 112335589998888885 7899999988753 22233
Q ss_pred ceeeEEEEec
Q 009242 139 GGYGGINIYQ 148 (539)
Q Consensus 139 Gl~G~liV~~ 148 (539)
.|.+.+.|.+
T Consensus 206 ~M~~~v~vv~ 215 (230)
T MTH00129 206 FMPIVVEAVP 215 (230)
T ss_pred CCcEEEEEEC
Confidence 4666666654
No 115
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.48 E-value=1.4e+02 Score=28.66 Aligned_cols=78 Identities=6% Similarity=-0.005 Sum_probs=55.9
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+-+.+|.|+.+++.+...+- .|. |+|-+-+ .+.|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~DV-iHS-------f~vP~lg-----------------~K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDV-IHS-------WALPSLS-----------------IKMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCcc-ccc-------ccccccC-----------------ceeecc---CCceEEEEEEEcCceE
Confidence 44678999999998888753 344 4443332 234554 5778888999999999
Q ss_pred eEEEeechh-hhhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
+.--|--+- -.+..|-..++|.++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHHH
Confidence 999998653 34567888888877654
No 116
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.75 E-value=1.3e+02 Score=29.46 Aligned_cols=78 Identities=5% Similarity=0.047 Sum_probs=55.9
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.++.|..+++.+...+- .| .|+|-+-+ .++|.+ ||-...+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~DV-iH-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAADV-LH-------SWTVPSLA-----------------VKMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCcc-cc-------ceeccccc-----------------CcccCC---CCceeeEEEEcCCcEE
Confidence 45788999999998887752 23 45554332 223443 5777788999999999
Q ss_pred eEEEeechh-hhhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
+.-.|.-+- .-+..|-..++|.++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 999999763 44677888888877654
No 117
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=34.75 E-value=94 Score=29.51 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=41.1
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.+.++.|+.+||++-.... .|.|.+ |.-.-....-||..-.+.++++ .+|.|...|+-
T Consensus 131 ~l~iP~g~~v~~~ltS~DV--iHsf~v----------------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae 188 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT--MTSFWI----------------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNAN 188 (217)
T ss_pred cEEEECCCEEEEEEECCch--hhhhhc----------------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehh
Confidence 5778888888887766544 334443 3333334455899999999998 79999999974
No 118
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.64 E-value=1.7e+02 Score=28.10 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=55.1
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+.+.++.|+.+++.+...+-. |.|.|-+-| .+.|.+ ||....+.+.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DVi--------Hsf~vP~lg-----------------~k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAEDVL--------HSWAVPSLG-----------------IKTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecccc--------ccccccccC-----------------ceEEcc---CCcceeEEEEeCCcEE
Confidence 457889999999988887633 445554332 123433 6788888999999999
Q ss_pred eEEEeechhh-hhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWER-QYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~H-~d~GMm~~~~V~~~~~ 516 (539)
+.--|.-+-. -+..|-..++|+++++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLNN 218 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHHH
Confidence 9999997643 3566777777776654
No 119
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=34.43 E-value=2.2e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=15.4
Q ss_pred EecCCEEEEEEEecCCCCeeeEEE
Q 009242 206 GDQGKTYMFRISNVGLSTSFNFRI 229 (539)
Q Consensus 206 v~~G~~~rlRliN~~~~~~~~~~l 229 (539)
.+.||+++|++-..-....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 568999999887744443334444
No 120
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=33.93 E-value=1.5e+02 Score=25.11 Aligned_cols=82 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred EECCCCCceEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCcccccee----eceEEEcCCceEEEEEEeCC--
Q 009242 195 LINGQGHTTFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNI----YDSLDVHVGQSVSVLVTLNQ-- 268 (539)
Q Consensus 195 liNG~~~~~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~----~d~l~l~pg~R~dv~v~~~~-- 268 (539)
++|-.+.+.-.+..|+.++++|-=......-.+.+ .+.+...+|..+--.. ...+....++++.+.+.++.
T Consensus 20 i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L 96 (142)
T PF14524_consen 20 ILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPL 96 (142)
T ss_dssp EEETTEES-SSEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B
T ss_pred EEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCcc
Confidence 33433333334677888888776555444333322 3556666776542211 22455555889988888875
Q ss_pred CCcceEEEEee
Q 009242 269 PPKDYYIVAST 279 (539)
Q Consensus 269 ~~g~~~~~~~~ 279 (539)
.+|.|.+...-
T Consensus 97 ~~G~Y~i~v~l 107 (142)
T PF14524_consen 97 NPGEYSISVGL 107 (142)
T ss_dssp -SEEEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 58999988764
No 121
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=33.92 E-value=2.4e+02 Score=24.13 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=41.5
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc-------cceeeceEEEcCCceEEEEEEeCC
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-------IQNIYDSLDVHVGQSVSVLVTLNQ 268 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-------~p~~~d~l~l~pg~R~dv~v~~~~ 268 (539)
.+++.....|+|++-..+ ...+.|+|..+ +..++..- .+....++.|..|++++|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 577777778999988433 45778888764 55555432 345567889999999999998753
No 122
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=33.70 E-value=61 Score=22.66 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=31.8
Q ss_pred CCCCCcceE-EEeCCCcEEEEEEEeCCceeeEEEeechhhhhc
Q 009242 462 LADTLTRHT-AQVYPQSWTVILVSLDNQGMWNMRSAIWERQYL 503 (539)
Q Consensus 462 ~~~p~~rDT-v~vpp~g~~~irf~adnpG~w~~HCHil~H~d~ 503 (539)
+..|..+-+ |..+.|+...++++......+=+||..+.|.+.
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344555553 445668888899999998899999999999753
No 123
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.68 E-value=2.1e+02 Score=27.37 Aligned_cols=78 Identities=8% Similarity=0.124 Sum_probs=55.3
Q ss_pred eEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCcee
Q 009242 411 SVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQGM 490 (539)
Q Consensus 411 ~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (539)
+-+.++.|+.+++.+...+- .|. |+|-+-+ .++|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV-iHs-------f~vp~l~-----------------~k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV-IHS-------WTVPSLG-----------------VKVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCch-hhh-------eeccccC-----------------CeeecC---CCceEEEEEEEcCceE
Confidence 45778999999998887753 343 4443322 123444 6888889999999999
Q ss_pred eEEEeechh-hhhcccEEEEEEecCcc
Q 009242 491 WNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
+.--|--+- .-|.-|-..++|+++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
Confidence 999998763 34567777887777654
No 124
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=33.19 E-value=1.3e+02 Score=28.74 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=42.3
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.+.++.|+.+||++-+... .|.|.+.+-.++ ...-||..-.+.+.++ .+|.|...|+-
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV--IHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSE 198 (228)
T ss_pred eEEEecCCEEEEEEEeCCc--cccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChh
Confidence 5788999999998888543 445555544322 2345788888888888 79999999874
No 125
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=32.21 E-value=1e+02 Score=24.81 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=26.8
Q ss_pred EEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc--c--ceeeceEEEcCCceEEE
Q 009242 211 TYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT--I--QNIYDSLDVHVGQSVSV 262 (539)
Q Consensus 211 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~l~l~pg~R~dv 262 (539)
.|++||-|.+.. .+.|-...+.|...||... + .+.-..=.|.||+.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 479999998886 4566666666666666431 1 11223446778886544
No 126
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=31.50 E-value=2.1e+02 Score=25.85 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=40.5
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
.+.+..|+.+||++-.... .|.|.+..-.+++ -.-||..-.+.+.++ .+|.|...|+-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsEl 132 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEM 132 (162)
T ss_pred CEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchh
Confidence 5778899988887765544 3566665443332 334677777777777 799999999743
No 127
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=30.34 E-value=2.8e+02 Score=26.57 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=30.0
Q ss_pred eEEEecCCEEEEEEEecCCCCee-eEEEeCCeeEEEEecCcccc
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSF-NFRIQGHTMKLVEVEGSHTI 245 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~-~~~l~gh~~~via~DG~~~~ 245 (539)
.+-+++| +|.||+|.-+-...- -+.+-+.-+.++|.|+.+.+
T Consensus 95 PLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 95 PLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred ceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 5778897 699999987654322 22334667889999999974
No 128
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=29.92 E-value=37 Score=27.83 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred EEECCCCCCceEEEEcCCEEEEEEEECCC
Q 009242 51 ILINGQFPGPRLDVVTNDNIILNVINKLD 79 (539)
Q Consensus 51 ~~~nG~~pgP~i~v~~Gd~v~i~~~N~l~ 79 (539)
..+||+.--|-=.|+.||.|.|++.|..-
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 56799887888999999999999999863
No 129
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=28.86 E-value=3.8e+02 Score=23.62 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=51.4
Q ss_pred ceEEECCCCCceEEEecC-CEEEEEEEecCCCCeeeEEEeCCeeEEEEecCcccccee-------eceEEEcCCceE-EE
Q 009242 192 DGVLINGQGHTTFNGDQG-KTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNI-------YDSLDVHVGQSV-SV 262 (539)
Q Consensus 192 ~~~liNG~~~~~l~v~~G-~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~-------~d~l~l~pg~R~-dv 262 (539)
+.-.||.-..+...-..| .+|.|.+-|.|.. .+.++...++|+ +||..+.|.. .+.|.|.|||-. ++
T Consensus 51 dFaIIndPg~i~~~~~~g~~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev 126 (154)
T COG3354 51 DFAIINDPGQIPYVGTDGPYTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREV 126 (154)
T ss_pred cEEEecCCCCCccccCCCceEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEE
Confidence 455566655543332212 4689999999985 356777777776 7998775533 357889999988 66
Q ss_pred EEEeCCCCcceEEEE
Q 009242 263 LVTLNQPPKDYYIVA 277 (539)
Q Consensus 263 ~v~~~~~~g~~~~~~ 277 (539)
.+.-. ..|.-.+..
T Consensus 127 ~vn~~-lSGyhri~V 140 (154)
T COG3354 127 TVNEA-LSGYHRIVV 140 (154)
T ss_pred EeccC-CCcceEEEE
Confidence 66544 345444433
No 130
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=28.21 E-value=68 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCccCCCCeEEEEEEe---CCCccceeEccCc
Q 009242 104 NCPIPPNSNYTYKFQT---KDQIGSYFYFPST 132 (539)
Q Consensus 104 ~~~i~pG~~~~y~~~~---~~~~Gt~wYH~H~ 132 (539)
+.||+||++++..+.. |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 5789999999999843 4457999888764
No 131
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.83 E-value=2.3e+02 Score=27.08 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=55.3
Q ss_pred eeEEEecCCcEEEEEEEcCCCCCCceeecCCceEEEeeccCcCCcccccccCCCCCCcceEEEeCCCcEEEEEEEeCCce
Q 009242 410 TSVMQVNLHEYIEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWAAEKRRTYNLADTLTRHTAQVYPQSWTVILVSLDNQG 489 (539)
Q Consensus 410 ~~~~~~~~g~~ve~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (539)
.+.+.++.|+.+++.++..+- .|. |+|-+.+ .+.|.+ ||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DV-iHs-------f~vP~lg-----------------~k~dai---PG~~n~~~~~~~~~G 190 (225)
T MTH00168 139 DNRLVLPMDSKIRVLVTSADV-LHS-------WTLPSLG-----------------LKMDAV---PGRLNQLAFLSSRPG 190 (225)
T ss_pred cceEEEecCCEEEEEEEeCCh-hhc-------ccccccc-----------------ccccCC---CCeEEEEEEEcCCCE
Confidence 345779999999998888753 343 4443322 123433 688888999999999
Q ss_pred eeEEEeechh-hhhcccEEEEEEecCcc
Q 009242 490 MWNMRSAIWE-RQYLGQQFYLKVWNAVH 516 (539)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (539)
.+---|.-+- -.+.-|-..++|+++++
T Consensus 191 ~~~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (225)
T MTH00168 191 SFYGQCSEICGANHSFMPIVVEFVPWET 218 (225)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 9999999763 33566777777777654
No 132
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=26.15 E-value=4e+02 Score=22.52 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=37.7
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc-cceeeceEEEcCCceEEEEEEeCC
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT-IQNIYDSLDVHVGQSVSVLVTLNQ 268 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~-~p~~~d~l~l~pg~R~dv~v~~~~ 268 (539)
.++++....|+|.+...+ ...+.|+|.. |+..++..- .+.....+.|..|+++.+.|...+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 566665567899885433 3467888763 344333221 123345688888888888887753
No 133
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=26.10 E-value=1.8e+02 Score=25.06 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=31.1
Q ss_pred EEEEEEEecCCCCeeeEEEeCCeeEEEEecCccc--c--ceeeceEEEcCCceEEE
Q 009242 211 TYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHT--I--QNIYDSLDVHVGQSVSV 262 (539)
Q Consensus 211 ~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~--~--p~~~d~l~l~pg~R~dv 262 (539)
.|++||.|.+.. .+.|-...+.|...||... + .+.-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 378999998764 4677777788877777532 1 12223446777776554
No 134
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.03 E-value=78 Score=27.93 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=21.2
Q ss_pred EeCCCcEEEEEEE-eCCc---eeeEEEeech
Q 009242 472 QVYPQSWTVILVS-LDNQ---GMWNMRSAIW 498 (539)
Q Consensus 472 ~vpp~g~~~irf~-adnp---G~w~~HCHil 498 (539)
.|+||..+.|.++ ..|| |.|.|+|=..
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5778999999995 4464 8999998763
No 135
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=25.99 E-value=1.3e+02 Score=30.28 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=44.2
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
.+.++.|+.+||++-..... +.|.+. .-.-.+..-||..-.+.+.++ ++|.|...|...
T Consensus 152 eL~iP~g~pV~f~lTS~DVi--HSF~IP----------------~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEy 210 (315)
T PRK10525 152 EIAFPANVPVYFKVTSNSVM--NSFFIP----------------RLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASY 210 (315)
T ss_pred cEEEecCCEEEEEEEEchhh--hhhhhh----------------hhCCeeecCCCceeEEEEEcC-CCEEEEEEChhh
Confidence 68899999999998877654 344443 333344566888888888888 799999999754
No 136
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=25.77 E-value=41 Score=25.33 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=15.6
Q ss_pred ceEEECCCCCc----eEEEecCCEEEEE
Q 009242 192 DGVLINGQGHT----TFNGDQGKTYMFR 215 (539)
Q Consensus 192 ~~~liNG~~~~----~l~v~~G~~~rlR 215 (539)
-.+.|||+... ...++.|++++||
T Consensus 41 W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 41 WMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred eEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 46788998765 6788999999886
No 137
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=25.70 E-value=2.8e+02 Score=23.61 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=14.7
Q ss_pred CCccCCCCeEEEEEEe
Q 009242 104 NCPIPPNSNYTYKFQT 119 (539)
Q Consensus 104 ~~~i~pG~~~~y~~~~ 119 (539)
.|||..|+.++|.+.+
T Consensus 76 ~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 76 SCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCcCCcEEEEEEee
Confidence 5999999999999976
No 138
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.30 E-value=49 Score=32.32 Aligned_cols=9 Identities=11% Similarity=0.084 Sum_probs=7.4
Q ss_pred ceeEccCcc
Q 009242 125 SYFYFPSTL 133 (539)
Q Consensus 125 t~wYH~H~~ 133 (539)
.=|||+|.+
T Consensus 134 VGWyHSHPg 142 (347)
T KOG1554|consen 134 VGWYHSHPG 142 (347)
T ss_pred eeeeecCCC
Confidence 459999976
No 139
>COG1470 Predicted membrane protein [Function unknown]
Probab=24.85 E-value=6.9e+02 Score=26.70 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=45.1
Q ss_pred eEEEecCCE--EEEEEEecCCCC--eeeEEEeCCeeEEEEecCccccceeeceEEEcCCceE--EEEEEeCC--CCcceE
Q 009242 203 TFNGDQGKT--YMFRISNVGLST--SFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSV--SVLVTLNQ--PPKDYY 274 (539)
Q Consensus 203 ~l~v~~G~~--~rlRliN~~~~~--~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~--dv~v~~~~--~~g~~~ 274 (539)
++++.+|+- ++++|-|.|+.. -..+.+++-.=+=+.+|+..+ + .|.||+|- ++.++++. .+|+|.
T Consensus 390 ~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 390 RLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred EEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 466777764 588999999765 345555554435555565522 2 34566654 55555553 478998
Q ss_pred EEEeeecc
Q 009242 275 IVASTRFT 282 (539)
Q Consensus 275 ~~~~~~~~ 282 (539)
+...+..+
T Consensus 463 i~i~~ksD 470 (513)
T COG1470 463 ITITAKSD 470 (513)
T ss_pred EEEEEeec
Confidence 88775544
No 140
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.62 E-value=2.3e+02 Score=27.13 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=40.9
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.+.++.|+.+||++-.... .|.|.+.....+ +..-||..-.+.+.++ .+|.|...|+-
T Consensus 141 ~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse 198 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDV--LHSWAVPSLGLK----------------TDAIPGRLNQTTLMST-RPGLYYGQCSE 198 (227)
T ss_pred eEEecCCCEEEEEEEECcc--cccccccccccc----------------eecCCCceEEEEEecC-CcEEEEEECcc
Confidence 6778999999988766544 345555443222 2344788888888888 79999999874
No 141
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.85 E-value=1.2e+02 Score=25.10 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=36.7
Q ss_pred eEEEEcC--CEEEEEEEECCCCCc--eeeeCCcCCCCCCCCCC----------CcccCCccCCCCeEEEEEE
Q 009242 61 RLDVVTN--DNIILNVINKLDQPF--LLTWNGIKQRKNSWQDG----------VLGTNCPIPPNSNYTYKFQ 118 (539)
Q Consensus 61 ~i~v~~G--d~v~i~~~N~l~~~~--~iH~HG~~~~~~~~~DG----------~~~~~~~i~pG~~~~y~~~ 118 (539)
.|.+++| +++.|+|+|..+.+. .-|+|=......-..|= ..|...-..||++.+.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 3889999 699999999997665 55777554432222221 1122244677887777765
No 142
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=22.29 E-value=31 Score=29.94 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=37.5
Q ss_pred cccCCCeEEEEEEEEEEeecCC--CeeeEEEEECCCC-CCceEEEEcCCEEEEEEEECCCCCceeeeCCcCCCCCCCCCC
Q 009242 23 VKADDPYRFYTWTVTSGTLSPL--GVPQEVILINGQF-PGPRLDVVTNDNIILNVINKLDQPFLLTWNGIKQRKNSWQDG 99 (539)
Q Consensus 23 ~~~~~~~~~~~l~~~~~~~~~~--G~~~~~~~~nG~~-pgP~i~v~~Gd~v~i~~~N~l~~~~~iH~HG~~~~~~~~~DG 99 (539)
..+......|-+++++...... |+..++ .|.+ +|..-+-..+..++..++.. .....++.+|. .+..+.+|
T Consensus 26 ~~~~~~~~~yy~t~se~~~~~~~~~~~vrv---~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~--~Pd~F~eg 99 (131)
T PF03100_consen 26 LYSFSDSAVYYLTPSELAAEPQKVGRKVRV---GGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGP--LPDLFREG 99 (131)
T ss_dssp ------SSS-EE-TTTTTTTST-TTSEEEE---EEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES----CTT--TT
T ss_pred HHHhhccceEEcCHHHHhhccccCCceEEE---eeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCC--CCccccCC
Confidence 4444455667777777554432 444343 3433 45444444788999999877 45578899997 56667777
Q ss_pred Cccc
Q 009242 100 VLGT 103 (539)
Q Consensus 100 ~~~~ 103 (539)
...+
T Consensus 100 ~~VV 103 (131)
T PF03100_consen 100 QGVV 103 (131)
T ss_dssp SEEE
T ss_pred CeEE
Confidence 6544
No 143
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.17 E-value=3.1e+02 Score=26.19 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=41.9
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVASTR 280 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~~ 280 (539)
.+.++.|+.+||++-.... .|.|.+..-..+ ...-||..-.+.+.++ .+|.|...|+-.
T Consensus 141 ~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~k----------------~davPG~~~~~~~~~~-~~G~y~g~Cse~ 199 (227)
T MTH00154 141 RLVLPMNTQIRILITAADV--IHSWTVPSLGVK----------------VDAVPGRLNQLNFLIN-RPGLFFGQCSEI 199 (227)
T ss_pred eEEEecCCEEEEEEEcCch--hhheeccccCCe----------------eecCCCceEEEEEEEc-CceEEEEEeech
Confidence 6789999999987765543 455665543222 2334788888888888 799999999743
No 144
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=21.54 E-value=2.5e+02 Score=29.64 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=27.8
Q ss_pred EEeCCCcEEEEEEEeCCceeeEEE----eechhhhhcccEE
Q 009242 471 AQVYPQSWTVILVSLDNQGMWNMR----SAIWERQYLGQQF 507 (539)
Q Consensus 471 v~vpp~g~~~irf~adnpG~w~~H----CHil~H~d~GMm~ 507 (539)
+.+-|.....+-|+++-||.|++- ||.++-|..|=|.
T Consensus 594 ~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rml 634 (637)
T COG4263 594 MEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRML 634 (637)
T ss_pred EEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhcccee
Confidence 456677889999999999999754 6776656666554
No 145
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.94 E-value=2.9e+02 Score=26.61 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=41.7
Q ss_pred eEEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEEEecCccccceeeceEEEcCCceEEEEEEeCCCCcceEEEEee
Q 009242 203 TFNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVSVLVTLNQPPKDYYIVAST 279 (539)
Q Consensus 203 ~l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~via~DG~~~~p~~~d~l~l~pg~R~dv~v~~~~~~g~~~~~~~~ 279 (539)
.+.++.|+.+|+++-+... .|.|.+.+..++ +..-||..-.+.+.++ .+|.|...|+-
T Consensus 145 ~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~k----------------~daiPG~~~~~~~~~~-~~G~y~g~Cse 202 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADV--LHSFAVPSLSVK----------------IDAVPGRLNQTSFFIK-RPGVFYGQCSE 202 (234)
T ss_pred EEEEecCcEEEEEEEeCch--hccccccccCce----------------eEccCCceEeEEEEeC-CCEEEEEEChh
Confidence 5789999999998887643 445555543322 2345788888888888 79999998874
No 146
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=20.88 E-value=2.7e+02 Score=20.69 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=18.2
Q ss_pred EEEecCCEEEEEEEecCCCCeeeEEEeCCeeEEE
Q 009242 204 FNGDQGKTYMFRISNVGLSTSFNFRIQGHTMKLV 237 (539)
Q Consensus 204 l~v~~G~~~rlRliN~~~~~~~~~~l~gh~~~vi 237 (539)
+++.+|+..+||.-.. ..+.+.+-.+++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT 30 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLT 30 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEE
Confidence 5677888888885432 2356666666664
No 147
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.54 E-value=1.2e+02 Score=26.18 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=19.3
Q ss_pred CcccchhhHHHHHHHHHHhhhhcccCCCeEEEEEEEEE
Q 009242 1 MARTLLLPLLVCVVLAALSVALVKADDPYRFYTWTVTS 38 (539)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 38 (539)
|.+...+-+.|.+.+++|.++.+++...+-.+|++|.-
T Consensus 1 m~~~~~~~l~Ll~aa~sL~~~~aaaaeatgkLTvti~g 38 (151)
T COG4704 1 MLNISRRRLFLLAAALSLVSLKAAAAEATGKLTVTING 38 (151)
T ss_pred CccHHHHHHHHHHHHHHHHhHHHHHHhhcCceEEEEcc
Confidence 44555555555444444544444444455556666553
No 148
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=20.35 E-value=5e+02 Score=22.04 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=34.6
Q ss_pred CceEEEEcCCEEEEEEEECCC---CCceeeeC----CcCCC-CCCCCCCCcccCCccCCCCeEEEEEEeC
Q 009242 59 GPRLDVVTNDNIILNVINKLD---QPFLLTWN----GIKQR-KNSWQDGVLGTNCPIPPNSNYTYKFQTK 120 (539)
Q Consensus 59 gP~i~v~~Gd~v~i~~~N~l~---~~~~iH~H----G~~~~-~~~~~DG~~~~~~~i~pG~~~~y~~~~~ 120 (539)
+..=.+++|..+.+.+.=... .......| |+... ..+..||=-.+.||+..|+.++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 344567788877666653322 22233334 33221 1123455211269999999999998763
Done!