BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009244
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 68 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRANRRKIMEYLRDAWASDRRAEWSIWM 127
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 164 GLPPPLEYADLAAVGTIADVAPLWGWNRALV-----KEGLARIPASSWVGLRLLAEAVGY 218
Query: 128 VYSKVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRI 187
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 219 TGKAVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTL 274
Query: 188 NNRSLQDMYIFGDPSSIPIVIVD 210
L+ + DP + IV++D
Sbjct: 275 EEAMLRKLLPQADPEAKAIVLLD 297
>pdb|2ZXO|A Chain A, Crystal Structure Of Recj From Thermus Thermophilus Hb8
pdb|2ZXP|A Chain A, Crystal Structure Of Recj In Complex With Mn2+ From
Thermus Thermophilus Hb8
pdb|2ZXR|A Chain A, Crystal Structure Of Recj In Complex With Mg2+ From
Thermus Thermophilus Hb8
Length = 666
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 68 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRANRRKIMEYLRDAWASDRRAEWSIWM 127
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 203 GLPPPLEYADLAAVGTIADVAPLWGWNRALV-----KEGLARIPASSWVGLRLLAEAVGY 257
Query: 128 VYSKVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRI 187
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 258 TGKAVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTL 313
Query: 188 NNRSLQDMYIFGDPSSIPIVIVD 210
L+ + DP + IV++D
Sbjct: 314 EEAMLRKLLPQADPEAKAIVLLD 336
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 294 LMSEVNEDKTYGDFREMGQRLAEEVISFVKRKMDKA---SRSGNLRDIMLSFVGHSIGNI 350
L EV + +F + ++ + +S + R++ KA + SG++ D + F SI N+
Sbjct: 114 LNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNV 173
Query: 351 II--RAALAESMMEP----YLRFLYTYVSISGPHLGYLYSSNSLFNSGLW 394
I R + E ++ P ++ +Y S P L LF + W
Sbjct: 174 IFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTW 223
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 294 LMSEVNEDKTYGDFREMGQRLAEEVISFVKRKMDKA---SRSGNLRDIMLSFVGHSIGNI 350
L EV + +F + ++ + +S + R++ KA + SG++ D + F SI N+
Sbjct: 111 LNQEVMAPEATKNFLPLLDAVSRDFVSVLHRRIKKAGSGNYSGDISDDLFRFAFESITNV 170
Query: 351 II--RAALAESMMEP----YLRFLYTYVSISGPHLGYLYSSNSLFNSGLW 394
I R + E ++ P ++ +Y S P L LF + W
Sbjct: 171 IFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLNLPPDLFRLFRTKTW 220
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 290 KIEFLMSEVNEDKTYGDFR-EMGQRLAEEVISFVKRKMDKAS----RSGNLRDIMLSFVG 344
K E + E+NE T FR E G A + M+KA+ +S L +F G
Sbjct: 1747 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1806
Query: 345 HSIGNIIIRAALAESM 360
HS+G A+LA+ M
Sbjct: 1807 HSLGEYAALASLADVM 1822
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 290 KIEFLMSEVNEDKTYGDFR-EMGQRLAEEVISFVKRKMDKAS----RSGNLRDIMLSFVG 344
K E + E+NE T FR E G A + M+KA+ +S L +F G
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 345 HSIGNIIIRAALAESM 360
HS+G A+LA+ M
Sbjct: 1762 HSLGEYAALASLADVM 1777
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,162,868
Number of Sequences: 62578
Number of extensions: 659280
Number of successful extensions: 1327
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 20
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)