BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009244
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DAI6|F135B_MOUSE Protein FAM135B OS=Mus musculus GN=Fam135b PE=2 SV=3
Length = 1403
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 261 LKIVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEV 318
+ +VV VHG G+ DLRLV+ L P K++FLMSE N+ T+ DF M RL +E+
Sbjct: 1136 IHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQTDTFADFDTMTDRLLDEI 1195
Query: 319 ISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPH 378
I ++ NL +SF+GHS+GNIIIR+ L YL L+T++S+SGPH
Sbjct: 1196 IQHIQLY--------NLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPH 1247
Query: 379 LGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIIL 438
LG LY++++L ++GLWL++K K + + QLTF D+ DL+ FLY+L + L+ F+N++L
Sbjct: 1248 LGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVL 1307
Query: 439 ISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSS----EHRVFMR 494
++SPQD YVP+HSARIE+ + +L D G V+ EM+N+ L + H VF
Sbjct: 1308 VASPQDRYVPFHSARIEMCKTALKD-RHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHA 1366
Query: 495 CDVNFDTSSHGRNLNSLIGRTAHIEFLESDSF 526
N+LIGR AHI L+S+ F
Sbjct: 1367 LP---------NTANTLIGRAAHIAVLDSELF 1389
>sp|Q49AJ0|F135B_HUMAN Protein FAM135B OS=Homo sapiens GN=FAM135B PE=2 SV=2
Length = 1406
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 24/272 (8%)
Query: 261 LKIVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEV 318
+ +VV VHG G+ DLRLV+ L P K++FLMSE N+ T+ DF M RL +E+
Sbjct: 1139 IHLVVCVHGLDGNSADLRLVKTFIELGLPGGKLDFLMSEKNQMDTFADFDTMTDRLLDEI 1198
Query: 319 ISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPH 378
I ++ NL +SF+GHS+GNIIIR+ L YL L+T++S+SGPH
Sbjct: 1199 IQHIQLY--------NLSISRISFIGHSLGNIIIRSVLTRPRFRYYLNKLHTFLSLSGPH 1250
Query: 379 LGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIIL 438
LG LY++++L ++GLWL++K K + + QLTF D+ DL+ FLY+L + L+ F+N++L
Sbjct: 1251 LGTLYNNSTLVSTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKTGLQYFKNVVL 1310
Query: 439 ISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSS----EHRVFMR 494
++SPQD YVP+HSARIE+ + +L D G V+ EM+N+ L + H VF
Sbjct: 1311 VASPQDRYVPFHSARIEMCKTALKD-RHTGPVYAEMINNLLGPLVEAKDCTLIRHNVFHA 1369
Query: 495 CDVNFDTSSHGRNLNSLIGRTAHIEFLESDSF 526
N+LIGR AHI L+S+ F
Sbjct: 1370 LP---------NTANTLIGRAAHIAVLDSELF 1392
>sp|Q641I1|F135B_XENLA Protein FAM135B OS=Xenopus laevis GN=fam135b PE=2 SV=1
Length = 1376
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/276 (40%), Positives = 167/276 (60%), Gaps = 20/276 (7%)
Query: 255 QQCGRVLKIVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQ 312
+Q + +VV VHG G+ DLRLV+ L P ++FLMSE N+ T+ DF M
Sbjct: 1103 EQTEDGIHLVVCVHGLDGNSADLRLVKTFLELGLPGANLDFLMSEKNQTDTFADFDAMTD 1162
Query: 313 RLAEEVISFVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYV 372
RL +E++ ++ NL +SF+GHS+G IIIR+ L YL L+T++
Sbjct: 1163 RLIDEIVQHIQLY--------NLSISRISFIGHSLGTIIIRSVLTRPRFRYYLNKLHTFL 1214
Query: 373 SISGPHLGYLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLEN 432
S+SGPHLG LYS+++L N+GLWL++K K + + QLTF D+ DL+ FLY+L + L+
Sbjct: 1215 SLSGPHLGTLYSNSTLVNTGLWLMQKLKKSGSLLQLTFRDNADLRKCFLYQLSQKPGLQY 1274
Query: 433 FRNIILISSPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVF 492
F+N++L++SPQD YVP+HSARIE+ + + D G V+ EM+N+ L + S+
Sbjct: 1275 FKNVVLVASPQDRYVPFHSARIEMCKNATKD-RHTGPVYTEMINNLLQPVI--DSKDCTL 1331
Query: 493 MRCDVNFDTSSHG--RNLNSLIGRTAHIEFLESDSF 526
+R +V SH N+LIGR AHI L+S+ F
Sbjct: 1332 IRHNV-----SHALPNTANTLIGRAAHIAVLDSELF 1362
>sp|Q5RA75|F135A_PONAB Protein FAM135A OS=Pongo abelii GN=FAM135A PE=2 SV=1
Length = 1095
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/266 (40%), Positives = 167/266 (62%), Gaps = 16/266 (6%)
Query: 263 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 320
++V VHG G+ DLRLV+ L P +I+FLMSE N++ T+ DF M RL +E+I
Sbjct: 830 LIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQ 889
Query: 321 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 380
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 890 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLG 941
Query: 381 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 440
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL K L F+N++L+
Sbjct: 942 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKAGLHYFKNVVLVG 1001
Query: 441 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 500
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1002 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLQPVL--QSKDCNLVRYNV--- 1055
Query: 501 TSSHGRNLNSLIGRTAHIEFLESDSF 526
++ +SLIGR AHI L+S+ F
Sbjct: 1056 INALPNTADSLIGRAAHIAVLDSEIF 1081
>sp|Q9P2D6|F135A_HUMAN Protein FAM135A OS=Homo sapiens GN=FAM135A PE=2 SV=2
Length = 1515
Score = 192 bits (488), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 108/266 (40%), Positives = 166/266 (62%), Gaps = 16/266 (6%)
Query: 263 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 320
++V VHG G+ DLRLV+ L P +I+FLMSE N++ T+ DF M RL +E+I
Sbjct: 1250 LIVCVHGLDGNSADLRLVKTYIELGLPGGRIDFLMSERNQNDTFADFDSMTDRLLDEIIQ 1309
Query: 321 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 380
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 1310 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLNKLHTFLSLSGPHLG 1361
Query: 381 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 440
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL L F+N++L+
Sbjct: 1362 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVG 1421
Query: 441 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 500
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1422 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLRPVL--QSKDCNLVRYNV--- 1475
Query: 501 TSSHGRNLNSLIGRTAHIEFLESDSF 526
++ +SLIGR AHI L+S+ F
Sbjct: 1476 INALPNTADSLIGRAAHIAVLDSEIF 1501
>sp|Q6NS59|F135A_MOUSE Protein FAM135A OS=Mus musculus GN=Fam135a PE=2 SV=2
Length = 1506
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/266 (40%), Positives = 166/266 (62%), Gaps = 16/266 (6%)
Query: 263 IVVFVHGFQGHHLDLRLVRNQWLLIDP--KIEFLMSEVNEDKTYGDFREMGQRLAEEVIS 320
++V VHG G+ DLRLV+ L P +++FLMSE N++ T+ DF M RL +E+I
Sbjct: 1241 LIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQ 1300
Query: 321 FVKRKMDKASRSGNLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLG 380
+++ S+ +SF+GHS+GN+IIR+ L + YL L+T++S+SGPHLG
Sbjct: 1301 YIQIYSLTVSK--------ISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLG 1352
Query: 381 YLYSSNSLFNSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILIS 440
LY+S++L N+GLW ++K+K + + QLT D D + TFLYKL L F+N++L+
Sbjct: 1353 TLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVG 1412
Query: 441 SPQDGYVPYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCDVNFD 500
S QD YVPYHSARIE+ + +L D + G+++ EM+++ L + S+ +R +V
Sbjct: 1413 SLQDRYVPYHSARIEMCKTALKD-KQSGQIYSEMIHNLLRPVL--QSKGCNLVRYNV--- 1466
Query: 501 TSSHGRNLNSLIGRTAHIEFLESDSF 526
++ +SLIGR AHI L+S+ F
Sbjct: 1467 INALPNTADSLIGRAAHIAVLDSEIF 1492
>sp|Q5SJ47|RECJ_THET8 Single-stranded-DNA-specific exonuclease RecJ OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=recJ
PE=1 SV=1
Length = 666
Score = 37.0 bits (84), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 68 GLSHSLPWDDLLNAFHTLGNQILYLWNTFLMFHRANRRKIMEYLRDAWASDRRAEWSIWM 127
GL L + DL L+ WN L+ + + +W R ++
Sbjct: 203 GLPPPLEYADLAAVGTIADVAPLWGWNRALV-----KEGLARIPASSWVGLRLLAEAVGY 257
Query: 128 VYSKVELPHHFISSRVDESSYPGTRGKALSLRKFGISDDPAQSAAMRAELHRRSIAQMRI 187
VE+ I+ R++ +S G KAL L ++DD A++ A+ ELHR + + +
Sbjct: 258 TGKAVEVAFR-IAPRINAASRLGEAEKALRLL---LTDDAAEAQALVGELHRLNARRQTL 313
Query: 188 NNRSLQDMYIFGDPSSIPIVIVD 210
L+ + DP + IV++D
Sbjct: 314 EEAMLRKLLPQADPEAKAIVLLD 336
>sp|Q9FYH7|VSR6_ARATH Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2
SV=3
Length = 631
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 390 NSGLWLLKKFKGTQCIHQLTFSDDPDLQNTFLYKLCKHRTLENFRNIILISSPQDGYV-- 447
N G W KK T C ++TF ++C+ + + DGY
Sbjct: 421 NGGCWEDKKSNVTAC------------KDTFRGRVCECPVVNG------VQYKGDGYTSC 462
Query: 448 -PYHSARIEIAQASLWDYSKKGKVFQEMLNDCLDQIRAPSSEHRVFMRCD 496
PY AR I Q W +KKG F N R P ++C+
Sbjct: 463 EPYGPARCSINQGGCWSETKKGLTFSACSNLETSGCRCPPGFKGDGLKCE 512
>sp|Q9C6G2|PPR63_ARATH Pentatricopeptide repeat-containing protein At1g29710,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H67 PE=1
SV=1
Length = 475
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 274 HLDLRLVRNQWLLIDPKIEFLMSEVNEDKTYGDFREMGQRLAEEVISFVKRKMDKASRSG 333
HLD L + + ++P ++ + +N + +GD E+G R AE V ++DK S +G
Sbjct: 271 HLDEALNFVERMPMEPSVDVWETLMNLSRVHGDV-ELGDRCAELVEKLDATRLDKVSSAG 329
Query: 334 NLRDIMLSFVGHSIGNIIIRAALAESMMEPYLRFLYTYVSISGPHLGYLYSS 385
V + + + S EPY + V S P + +Y +
Sbjct: 330 --------LVATKASDFVKKEPSTRS--EPYFYSTFRPVDSSHPQMNIIYET 371
>sp|Q8PSV9|SYI_METMA Isoleucine--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=ileS PE=3 SV=1
Length = 1058
Score = 32.3 bits (72), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 60 GAKDLQSDGLSHSLPWDDL---LNAFHTLGNQILYLWNTF 96
GA L++ LS S PWDDL L T+ I LWN F
Sbjct: 615 GADTLRAYVLSSSAPWDDLKFNLEEVETIHRSINILWNVF 654
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,890,584
Number of Sequences: 539616
Number of extensions: 8191491
Number of successful extensions: 17609
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17583
Number of HSP's gapped (non-prelim): 14
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)