BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009245
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VFR|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2): Native
Enzyme
pdb|2VFS|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Xylitol
pdb|2VFT|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sorbitol
pdb|2VFU|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Mannitol
pdb|2VFV|A Chain A, Alditol Oxidase From Streptomyces Coelicolor A3(2):
Complex With Sulphite
Length = 422
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 62 AANVAYPASE---QELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLN 118
A N+ Y A E + + A R++V HS ++ P G G+L+S L
Sbjct: 14 AGNITYTAKELLRPHSLDALRALVADSARVRVLGS-GHSFNEIAEP-GDGGVLLSLAGLP 71
Query: 119 RVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWG 178
V+ +D A TV V GV ++ GLALP ++V G + TG HGS + G
Sbjct: 72 SVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMASLPHISVAGSVATGTHGSGV-G 130
Query: 179 RGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVISQVTLKLEPL 238
GS + E+ +VT + V+ + F A SLG LGV++ +TL LEP
Sbjct: 131 NGS-LASVVREVELVTADG------STVVIARGDERFGGAVTSLGALGVVTSLTLDLEPA 183
Query: 239 FK 240
++
Sbjct: 184 YE 185
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 65 VAYPASEQELISIVAAAA---MTKTRIKVATRFSHSIPKLVCPAGQEGLLIS--TKHLNR 119
V +P +++ IV A + I T S+ L+CPA + +IS T +NR
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYG---LMCPADETRTIISLDTSQMNR 265
Query: 120 VLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGL-TVGGMLGTGAHG--SSL 176
+L +D +T VE+G+T +++ + ++G + P TVGG + T A G ++
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 177 WGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVISQVTLKLE 236
+G ++ D V +++VTP E+ ++ + S G LGVI++ T+K+
Sbjct: 326 YG---NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIR 382
Query: 237 P 237
P
Sbjct: 383 P 383
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 65 VAYPASEQELISIVAAAA---MTKTRIKVATRFSHSIPKLVCPAGQEGLLIS--TKHLNR 119
V +P +++ IV A + I T S+ L+CPA + +IS T +NR
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYG---LMCPADETRTIISLDTSQMNR 265
Query: 120 VLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGL-TVGGMLGTGAHG--SSL 176
+L +D +T VE+G+T +++ + ++G + P TVGG + T A G ++
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 177 WGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVISQVTLKLE 236
+G ++ D V +++VTP E+ ++ + S G LGVI++ T+K+
Sbjct: 326 YG---NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIR 382
Query: 237 P 237
P
Sbjct: 383 P 383
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 65 VAYPASEQELISIVAAAA---MTKTRIKVATRFSHSIPKLVCPAGQEGLLIS--TKHLNR 119
V +P +++ IV A + I T S+ L+CPA + +IS T +NR
Sbjct: 209 VLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYG---LMCPADETRTIISLDTSQMNR 265
Query: 120 VLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGL-TVGGMLGTGAHG--SSL 176
+L +D +T VE+G+T +++ + ++G + P TVGG + T A G ++
Sbjct: 266 ILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNI 325
Query: 177 WGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVISQVTLKLE 236
+G ++ D V +++VTP E+ ++ + S G LGVI++ T+K+
Sbjct: 326 YG---NIEDLVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIR 382
Query: 237 P 237
P
Sbjct: 383 P 383
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 22/189 (11%)
Query: 57 RSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKH 116
R+ A+V + + ++ V AA R +A S G GL+I
Sbjct: 26 RTAPTVASVLSTSDPEVIVRAVTRAAEEGGRGVIARGLGRSYGDNAQNGG--GLVIDMPA 83
Query: 117 LNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSL 176
LNR+ +D V V++GV+L Q+++ + GL +P P +TVGG +G HG +
Sbjct: 84 LNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAIGCDIHGKNH 143
Query: 177 WGRGS-SVHDYAV-------EIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVI 228
GS H ++ E+R +TP P+ + F+A G+ G+I
Sbjct: 144 HSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDL------------FWATVGGNGLTGII 191
Query: 229 SQVTLKLEP 237
+ T+++ P
Sbjct: 192 LRATIEMTP 200
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 20/137 (14%)
Query: 109 GLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLG 168
GL+I LNR+ +D V V++GV+L Q+++ + GL +P P +TVGG +G
Sbjct: 11 GLVIDMPALNRIHSIDSGTRLVDVDAGVSLDQLMKAALPHGLWVPVLPGTRQVTVGGAIG 70
Query: 169 TGAHGSSLWGRGS-SVHDYAV-------EIRIVTPGNPEEEFVNVRVLNESHQDFYAAKV 220
HG + GS H ++ E+R +TP P+ + F+A
Sbjct: 71 CDIHGKNHHSAGSFGNHVRSMELLTANGEVRHLTPAGPDSDL------------FWATVG 118
Query: 221 SLGVLGVISQVTLKLEP 237
G+ G+I + T+++ P
Sbjct: 119 GNGLTGIILRATIEMTP 135
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 109 GLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLG 168
GL+I LN + +D V +++GV L Q+++ + GL +P P +TVGG +
Sbjct: 89 GLVIDMTPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVTVGGAIA 148
Query: 169 TGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNESHQDFYAAKVSLGVLGVI 228
HG + GS + +R + + E ++ E + F+A G+ G+I
Sbjct: 149 CDIHGKNHHSAGS----FGNHVRSMDLLTADGEIRHLTPTGEDAELFWATVGGNGLTGII 204
Query: 229 SQVTLKLEP 237
+ T+++ P
Sbjct: 205 MRATIEMTP 213
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 482 VFKYGGLPHWGKNRNLVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSE 528
V ++GG + K+ + Y E++ V++K DPL +F+S+
Sbjct: 427 VLEFGGRLYTAKDSRTTAETFHAMYPRVDEWISVRRKVDPLRVFASD 473
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 7/132 (5%)
Query: 110 LLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWG-LTVGGMLG 168
++IS K +++ ++D + T+TVE+G L++V E++A+ P G T+GG L
Sbjct: 98 VVISLKRXDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLS 157
Query: 169 TGAHGSSLWGRGSSVHDYAVEIRIV-TPGNPEEEFVNVRVLNESH--QDFYAAKVSLGVL 225
T A G++ G + D A+ + +V G ++ N + +D + + G L
Sbjct: 158 TNAGGTAALAYGLA-RDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIG--AEGTL 214
Query: 226 GVISQVTLKLEP 237
G+I+ TLKL P
Sbjct: 215 GIITAATLKLFP 226
>pdb|3JS8|A Chain A, Solvent-Stable Cholesterol Oxidase
Length = 540
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 68 PASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEG----LLISTKHLNRVLKL 123
P S E++ + A +++ A H+ L AG LL +T++L + +
Sbjct: 36 PRSADEVVKVANWAKDNGYKVR-ARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLT-AMSI 93
Query: 124 DVQA--MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRG 180
D VT ++G+T+ ++ KAGL + P LT+GG+L HG+++ +G
Sbjct: 94 DASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKG 152
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 LLISTKHLNRV-LKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLG 168
L + HLN + + TVT +G ++ ++ E K L P L++GG L
Sbjct: 87 LADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALA 146
Query: 169 TGAHGSSLWGRGSSV---HDYAVEIRIVT 194
AHG++L G + H Y +VT
Sbjct: 147 VNAHGAALPAVGQTTLPGHTYGSLSNLVT 175
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 LLISTKHLNRV-LKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLG 168
L + HLN + + TVT +G ++ ++ E K L P L++GG L
Sbjct: 87 LADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALA 146
Query: 169 TGAHGSSLWGRGSSV---HDYAVEIRIVT 194
AHG++L G + H Y +VT
Sbjct: 147 VNAHGAALPAVGQTTLPGHTYGSLSNLVT 175
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 73 ELISIVAAAAMTKTRIKVATRFSHSIPKLVCP-AGQEGLLISTKHLNRVLKLDVQAMTVT 131
++++I AAA + + A + K V A G+LI R + + +
Sbjct: 350 KVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIW-----RTVAMIINEALDA 404
Query: 132 VESGVTLRQVIEESAKAGLALPYGPYWWGLTVG 164
++ GV Q I+ + + G+ PYGP WG +G
Sbjct: 405 LQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLG 437
>pdb|2V64|D Chain D, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|E Chain E, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|H Chain H, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 207
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 171
>pdb|1DUJ|A Chain A, Solution Structure Of The Spindle Assembly Checkpoint
Protein Human Mad2
Length = 187
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 161
>pdb|1KLQ|A Chain A, The Mad2 Spindle Checkpoint Protein Undergoes Similar
Major Conformational Changes Upon Binding To Either Mad1
Or Cdc20
Length = 197
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 123 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 161
>pdb|2V64|A Chain A, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|C Chain C, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2.
pdb|2V64|F Chain F, Crystallographic Structure Of The Conformational Dimer Of
The Spindle Assembly Checkpoint Protein Mad2
Length = 213
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 139 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 177
>pdb|2QYF|A Chain A, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
pdb|2QYF|C Chain C, Crystal Structure Of The Mad2P31(COMET)MAD2-Binding
Peptide Ternary Complex
Length = 206
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 132 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 170
>pdb|3GMH|A Chain A, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|B Chain B, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|C Chain C, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|D Chain D, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|E Chain E, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|F Chain F, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|G Chain G, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|H Chain H, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|I Chain I, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|J Chain J, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|K Chain K, Crystal Structure Of The Mad2 Dimer
pdb|3GMH|L Chain L, Crystal Structure Of The Mad2 Dimer
Length = 207
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 434 IMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYED 472
++R + A+ +L E S FD++ Y KD + P +E+
Sbjct: 133 VIRQITATVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEE 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,379,084
Number of Sequences: 62578
Number of extensions: 634874
Number of successful extensions: 1613
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1576
Number of HSP's gapped (non-prelim): 40
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)