Query 009245
Match_columns 539
No_of_seqs 271 out of 2250
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 22:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01677 pln_FAD_oxido plant- 100.0 1.3E-94 2.7E-99 777.9 47.4 507 30-537 1-512 (557)
2 KOG4730 D-arabinono-1, 4-lacto 100.0 2.8E-82 6E-87 633.8 34.6 497 21-538 10-516 (518)
3 TIGR01676 GLDHase galactonolac 100.0 1.5E-79 3.3E-84 651.7 39.3 448 48-534 48-540 (541)
4 TIGR01678 FAD_lactone_ox sugar 100.0 3E-79 6.5E-84 646.7 35.7 428 50-528 3-438 (438)
5 PLN02465 L-galactono-1,4-lacto 100.0 1E-77 2.2E-82 642.8 41.2 452 45-536 80-572 (573)
6 TIGR01679 bact_FAD_ox FAD-link 100.0 4.2E-76 9E-81 622.4 37.8 415 51-535 1-419 (419)
7 PLN00107 FAD-dependent oxidore 100.0 7.1E-54 1.5E-58 408.9 18.3 196 341-536 6-205 (257)
8 PLN02441 cytokinin dehydrogena 100.0 1.7E-42 3.8E-47 369.2 34.5 427 50-535 53-519 (525)
9 PF04030 ALO: D-arabinono-1,4- 100.0 2.4E-42 5.3E-47 344.1 11.6 257 231-533 1-259 (259)
10 COG0277 GlcD FAD/FMN-containin 100.0 9.5E-37 2.1E-41 328.4 27.4 414 52-532 23-457 (459)
11 PLN02805 D-lactate dehydrogena 100.0 1.1E-33 2.3E-38 306.2 29.5 192 60-261 132-332 (555)
12 PRK11230 glycolate oxidase sub 100.0 9.3E-33 2E-37 297.4 31.5 218 29-261 28-255 (499)
13 TIGR00387 glcD glycolate oxida 100.0 7.8E-31 1.7E-35 277.8 25.9 188 65-261 1-198 (413)
14 KOG1231 Proteins containing th 100.0 8.9E-30 1.9E-34 256.3 24.0 181 52-241 54-241 (505)
15 PRK11282 glcE glycolate oxidas 100.0 2.2E-28 4.9E-33 250.6 18.1 182 70-262 3-194 (352)
16 KOG1233 Alkyl-dihydroxyacetone 99.9 3.3E-24 7.2E-29 211.3 19.7 214 45-261 144-364 (613)
17 PF01565 FAD_binding_4: FAD bi 99.9 4E-25 8.6E-30 199.2 11.6 138 62-209 1-139 (139)
18 PRK11183 D-lactate dehydrogena 99.9 6.1E-23 1.3E-27 215.9 18.3 213 29-253 12-281 (564)
19 KOG1232 Proteins containing th 99.9 6.2E-23 1.3E-27 202.2 10.4 198 52-254 80-283 (511)
20 PRK13905 murB UDP-N-acetylenol 99.9 3.9E-22 8.4E-27 202.0 14.4 171 49-239 20-193 (298)
21 PRK14652 UDP-N-acetylenolpyruv 99.8 4.1E-20 9E-25 186.6 15.6 173 48-239 24-196 (302)
22 TIGR00179 murB UDP-N-acetyleno 99.8 9.8E-20 2.1E-24 182.8 14.8 174 49-240 2-177 (284)
23 PRK13906 murB UDP-N-acetylenol 99.8 1E-19 2.2E-24 184.2 14.3 171 49-238 26-197 (307)
24 PRK12436 UDP-N-acetylenolpyruv 99.8 1.7E-19 3.7E-24 182.6 14.0 171 49-238 26-197 (305)
25 KOG1262 FAD-binding protein DI 99.8 2.8E-18 6E-23 170.1 21.1 386 110-531 104-523 (543)
26 PRK13903 murB UDP-N-acetylenol 99.8 1E-18 2.2E-23 179.5 15.4 174 48-239 21-197 (363)
27 PRK14653 UDP-N-acetylenolpyruv 99.8 2.7E-18 5.9E-23 172.4 14.2 171 48-239 22-194 (297)
28 PRK14649 UDP-N-acetylenolpyruv 99.8 3E-18 6.6E-23 172.7 14.4 175 48-239 9-193 (295)
29 PRK14650 UDP-N-acetylenolpyruv 99.7 2.6E-17 5.6E-22 164.8 13.7 174 48-240 21-196 (302)
30 COG0812 MurB UDP-N-acetylmuram 99.7 6.1E-17 1.3E-21 159.5 14.7 174 48-238 9-183 (291)
31 PRK00046 murB UDP-N-acetylenol 99.7 1.1E-16 2.3E-21 162.7 13.2 173 48-239 9-189 (334)
32 PRK14648 UDP-N-acetylenolpyruv 99.7 3.7E-16 8E-21 158.5 13.9 175 48-239 18-237 (354)
33 PRK14651 UDP-N-acetylenolpyruv 99.6 2.5E-14 5.3E-19 141.4 12.2 161 48-238 9-170 (273)
34 PF09129 Chol_subst-bind: Chol 99.4 1.7E-11 3.6E-16 117.7 15.1 244 256-535 25-321 (321)
35 PRK13904 murB UDP-N-acetylenol 99.3 5.7E-12 1.2E-16 123.5 9.7 155 48-240 7-161 (257)
36 PF00941 FAD_binding_5: FAD bi 97.0 0.00041 8.9E-09 64.6 3.0 129 62-198 2-140 (171)
37 PF09265 Cytokin-bind: Cytokin 96.7 0.0028 6.1E-08 63.1 6.1 151 354-527 113-276 (281)
38 PRK09799 putative oxidoreducta 96.5 0.0071 1.5E-07 60.2 7.1 101 64-170 4-110 (258)
39 TIGR03312 Se_sel_red_FAD proba 96.1 0.014 3.1E-07 58.0 6.9 101 64-171 3-110 (257)
40 PF02913 FAD-oxidase_C: FAD li 95.5 0.025 5.5E-07 55.1 6.0 113 394-527 128-245 (248)
41 TIGR02963 xanthine_xdhA xanthi 95.4 0.034 7.3E-07 60.1 7.2 106 61-171 191-304 (467)
42 PRK09971 xanthine dehydrogenas 95.3 0.023 5.1E-07 57.6 5.0 103 64-171 6-119 (291)
43 PF08031 BBE: Berberine and be 95.3 0.011 2.4E-07 42.5 1.9 29 501-529 14-44 (47)
44 TIGR03195 4hydrxCoA_B 4-hydrox 95.0 0.028 6.1E-07 57.6 4.7 104 64-172 6-119 (321)
45 TIGR03199 pucC xanthine dehydr 94.1 0.044 9.5E-07 54.8 3.5 98 68-170 1-109 (264)
46 PLN02906 xanthine dehydrogenas 91.6 0.27 5.8E-06 59.9 5.9 105 62-171 228-351 (1319)
47 TIGR02969 mam_aldehyde_ox alde 91.4 0.4 8.8E-06 58.4 7.1 106 63-173 237-361 (1330)
48 PLN00192 aldehyde oxidase 90.5 0.54 1.2E-05 57.5 7.0 108 62-171 233-353 (1344)
49 COG4630 XdhA Xanthine dehydrog 89.8 0.71 1.5E-05 47.4 6.1 104 62-171 203-315 (493)
50 COG1319 CoxM Aerobic-type carb 87.3 1.4 2.9E-05 44.4 6.2 108 62-174 3-121 (284)
51 PF03614 Flag1_repress: Repres 60.0 18 0.00038 32.5 4.8 39 64-102 8-46 (165)
52 PF03392 OS-D: Insect pheromon 56.7 6.1 0.00013 32.9 1.3 27 501-529 69-95 (95)
53 PF07317 YcgR: Flagellar regul 43.4 69 0.0015 27.2 5.8 65 68-150 4-68 (108)
54 TIGR03752 conj_TIGR03752 integ 39.3 31 0.00068 37.0 3.7 39 163-210 288-327 (472)
55 COG4981 Enoyl reductase domain 34.7 56 0.0012 35.7 4.6 93 60-164 150-253 (717)
56 PRK04322 peptidyl-tRNA hydrola 32.3 80 0.0017 27.2 4.5 44 52-97 40-83 (113)
57 COG5470 Uncharacterized conser 32.0 59 0.0013 27.0 3.3 50 468-518 16-84 (96)
58 KOG3282 Uncharacterized conser 30.4 68 0.0015 29.9 3.9 40 57-96 120-159 (190)
59 KOG0430 Xanthine dehydrogenase 30.0 1.4E+02 0.003 35.8 7.1 105 63-173 215-334 (1257)
60 PRK11282 glcE glycolate oxidas 30.0 43 0.00094 34.9 2.9 51 475-527 293-345 (352)
61 KOG2212 Alpha-amylase [Carbohy 22.5 97 0.0021 32.0 3.7 39 52-90 75-113 (504)
62 cd02407 PTH2_family Peptidyl-t 21.3 1.8E+02 0.0039 25.1 4.7 44 52-97 42-85 (115)
No 1
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.3e-94 Score=777.92 Aligned_cols=507 Identities=63% Similarity=1.132 Sum_probs=430.0
Q ss_pred CCCCCeecCCCCCCccccccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCC-C
Q 009245 30 PPEDPIKCSSNNNSSCTITNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQ-E 108 (539)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~-~ 108 (539)
+|+++++|++ ++++|++.|+|+||++++.+.|..+++|+|++||+++|+.|++++++|+++||+|||+++++++.+. +
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~g 79 (557)
T TIGR01677 1 PPDDPVRCVS-GGANCTVSNAYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDG 79 (557)
T ss_pred CCCCCeeccc-CCCCceeecchhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCC
Confidence 5778999976 7789999999999999999999999999999999999999999999999997789999998887533 3
Q ss_pred cEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCcccccee
Q 009245 109 GLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAV 188 (539)
Q Consensus 109 gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~ 188 (539)
+++|||++||+++++|.++++|||+||+++.+|.+.|.++|+++++.+++..+||||+++||+||++..+++|.++|+|+
T Consensus 80 gvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~ 159 (557)
T TIGR01677 80 ALLISTKRLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVV 159 (557)
T ss_pred EEEEEcccCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEE
Confidence 69999999999999999999999999999999999999999999999988889999999999999988556899999999
Q ss_pred EEEEEccCCCcccceeEEEcCC-Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcccccc
Q 009245 189 EIRIVTPGNPEEEFVNVRVLNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEF 266 (539)
Q Consensus 189 ~~~vV~~~G~~~~~~~v~~~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (539)
++++|+++|+.+|.++++++++ +++| |++++||+|+|||||++|||++|.++....+...+.+.+.+.++++.++++|
T Consensus 160 ~l~vV~a~G~a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (557)
T TIGR01677 160 GIRLVVPASAAEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSVTYTMRDDSDFEDQFVTFGKKHEF 239 (557)
T ss_pred EEEEEeCCCcccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEccccceEEEEcCCHHHHHHHHHHhhcCCeE
Confidence 9999999996555556888887 5677 9999999999999999999999999877777777777788889999999999
Q ss_pred eeEEEecCCCceeeeeccccCCCCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCccccccchhhhhhhhhhccc
Q 009245 267 ADITWYPSQRKAAYRVDDRISSNTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIGGKLVTSTLNAFAFGL 346 (539)
Q Consensus 267 ~~~~w~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (539)
++|+|+|+++.++++..++++.+..++..+++++++..++......+..++.++......+.|....+.+...+.+.+++
T Consensus 240 ~~f~w~P~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (557)
T TIGR01677 240 ADITWYPSQGKAVYRRDDRVPVNASGNGVNDFLGFRSTLIAAIAGIRALEETFERSRNANGKCVTATITSAALFLPGYGL 319 (557)
T ss_pred EEEEEECCCCeEEEEecCcCCCCCCcchhhhhccccccchhhhhhhhhhhHHHhhhcccccceeccccccchhhhhcccc
Confidence 99999999999999998987765444555565555433222222222222332322223345554444433333333333
Q ss_pred cc-CCeeeeccccccccccccccccccccccccccccccCCCcccC-cceeeeEEEEechhHHHHHHHHHHHHHhCcccc
Q 009245 347 TN-DGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRING-EFFHQTTFSVALSVVKNFIQDIQKLVQMEPKAL 424 (539)
Q Consensus 347 ~~-~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~ 424 (539)
.. ++..++..+++|++++|++++.|.+.+.+.+...|.|+++.+. .+|+||||+||++++.++|++|++++++.+..+
T Consensus 320 ~~~~~~~~~~~~~~g~s~~v~~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP~e~~~~al~~vr~~~~~~~~~~ 399 (557)
T TIGR01677 320 TNSGGIIFTGYPVVGSQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVPVSRFRDFVLDVKRLRDMEPKSL 399 (557)
T ss_pred cccccccccCCceecchHhhcccccccccccccccccCccccccccccceeEEEEEeeHHHHHHHHHHHHHHHHhccccc
Confidence 21 2233556688999999999999987766555557899877655 679999999999999999999999999887666
Q ss_pred ccceeeeeEEEEEecCCCCCCCCCCCeEEEEEEEeccCCCCCccccHHHHHHHHHHHHhhcCCccccccCCCccchhHHH
Q 009245 425 CGLELYNGIIMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYEDVLEEIEQLAVFKYGGLPHWGKNRNLVFDGVIK 504 (539)
Q Consensus 425 ~~~~~~~pi~~Rfv~~d~~~Ls~~~d~~~i~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~gGRPHWgK~~~~~~~~l~~ 504 (539)
|..+++|||||||+++||+||||+||+|||+|++|++.+++.|+.|++||+++|+|++.+|||||||||+|.++++++++
T Consensus 400 ~~~~~~fpievR~v~aDd~wLSp~rds~~i~~~~~~~~~~~~~~~~~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~ 479 (557)
T TIGR01677 400 CGVELYNGILIRYVKASPAYLGKEEDAVDFDFTYYRAKDPLTPRLYEDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIR 479 (557)
T ss_pred CceeeecCeEEEEecCCccccCCCCceEEEEEEEecCCCCcccchHHHHHHHHHHHHHhhcCCCCCccccccchHHHHHH
Confidence 77789999999999999999999999999999999999888999999999999997579999999999999999999999
Q ss_pred hCCCHHHHHHHHHhcCCCCCCcchhhhhhcCCC
Q 009245 505 KYKNAGEFLKVKQKFDPLGLFSSEWTDQMLGLK 537 (539)
Q Consensus 505 ~YP~~~~F~~~r~~~DP~g~F~n~~~~~llg~~ 537 (539)
+||+|++|+++|+++||+|+|.|+|+++|||..
T Consensus 480 ~YP~~~dF~alR~~~DP~g~F~N~yl~~l~~~~ 512 (557)
T TIGR01677 480 KYPNADKFLKVKDSYDPKGLFSSEWSDEILGIK 512 (557)
T ss_pred hCCCHHHHHHHHHhcCCCCccCCHHHHHHhCcC
Confidence 999999999999999999999999999999863
No 2
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=100.00 E-value=2.8e-82 Score=633.78 Aligned_cols=497 Identities=56% Similarity=0.954 Sum_probs=451.0
Q ss_pred HHHHHhcCCCCCCCeecCCCCCCccccccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCC
Q 009245 21 LLFIAVNGSPPEDPIKCSSNNNSSCTITNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPK 100 (539)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~ 100 (539)
|......+.||.+|++|.+ +...|+..+.|..|+.+..|+++.|-+|+|++||.++|+.|.++|.++|++ |.|||.++
T Consensus 10 ~~~~~~~S~Pp~~p~r~~~-~~~~~t~~~tY~afPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvV-g~gHSp~~ 87 (518)
T KOG4730|consen 10 CTTGTTSSIPPPPPFRCDS-GNTFCTVANTYGAFPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVV-GSGHSPSK 87 (518)
T ss_pred eeeeeeecCCCCCCccccc-cceeeeeeecccccCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEe-cccCCCCc
Confidence 3334556788999999987 667899999999999999999999999999999999999999999999999 59999999
Q ss_pred CcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCC
Q 009245 101 LVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRG 180 (539)
Q Consensus 101 ~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~ 180 (539)
++|++ |.+|++++||+++++|++.++|||+||+++.||++++++.|+++++.|++.++||||+|+||+||++.+
T Consensus 88 l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~--- 161 (518)
T KOG4730|consen 88 LVCTD---GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLW--- 161 (518)
T ss_pred ceecc---ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcCccccCCCceecceeeeEEecccCCCccc---
Confidence 99996 799999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CccccceeEEEEEc----cCCCcccceeEEEcCC-Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHH
Q 009245 181 SSVHDYAVEIRIVT----PGNPEEEFVNVRVLNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLG 254 (539)
Q Consensus 181 g~~~d~V~~~~vV~----~~G~~~~~~~v~~~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~ 254 (539)
++|+|.++.+|. ++|. ++.+++ .+|+ |+|+++|+|.||||.+|||+++|++++..++.+.++.++.
T Consensus 162 --vH~~v~~i~~v~~~~~~~G~------v~~Ls~e~dpe~F~AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~~v~n~~dl~ 233 (518)
T KOG4730|consen 162 --VHDYVSEIISVSPITPADGF------VVVLSEEKDPELFNAAKVSLGVLGVISQVTLSVVPAFKRSLTYVVTNDSDLF 233 (518)
T ss_pred --cCcccceeEEEeeeccCCce------EEEecccCCHHHHhhhhhcccceeEEEEEEEEEEecceeeeEEEEechHHHH
Confidence 566666666654 5666 888888 4677 9999999999999999999999999999998888888877
Q ss_pred HHHH-HhcccccceeEEEecCCCceeeeeccccCCCCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCccccccc
Q 009245 255 DQAA-IFGHRHEFADITWYPSQRKAAYRVDDRISSNTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIGGK 333 (539)
Q Consensus 255 ~~~~-~~~~~~~~~~~~w~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (539)
++.. .+.++|+|+++.|+|++++++++++|+++.++ |+.|+.+++|.+++.....|..++..+..+...++|..+.
T Consensus 234 ~d~~~~~~~~~EF~~~~w~Py~~kvV~~~~nrv~~nt---g~~~f~p~~~~~s~~~~~~~s~~e~~~~~r~~~~kc~~a~ 310 (518)
T KOG4730|consen 234 KDWKVTLGESHEFVDVLWYPYTGKVVYRRDNRVPVNT---GLPDFKPFRPQPSAVLAKLRSFEESIELFRDANGKCVSAD 310 (518)
T ss_pred HHHHHHhcccccceEEEEeccCCeEEEEecCcccccc---CCccccCCCCcHHHHHHHHHHHHHHHHHhhhccCceecCc
Confidence 6666 89999999999999999999999999998875 7889999999988777777777777777666678897766
Q ss_pred hhhhhhhhhhcccccCCeeeeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHH
Q 009245 334 LVTSTLNAFAFGLTNDGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDI 413 (539)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v 413 (539)
...+.++.+.++..|++..++++|++|-+.++..++.|+++-.+. ..|.|++++.+.+|++.-..||++++.+||+++
T Consensus 311 ~~tp~l~~~sf~~~~~~~~~t~~pvig~q~~~~~s~sCl~s~~~g--~~~~W~~ri~g~f~~qt~~s~pl~~~~~ai~di 388 (518)
T KOG4730|consen 311 SVTPYLERFSFGLTNGGKLFTGYPVIGVQGKMMSSGSCLDSQSDG--TACEWDPRIKGFFFHQTTFSIPLTAVKDAINDI 388 (518)
T ss_pred ccchhHHHhhhheecCcEeeecCcccCccchhccchhhhhhccCc--cccCCCccccCchhheeeeccchhhhhhHhhhh
Confidence 666778888999999888999999999999999999999877666 479999999999999999999999999999999
Q ss_pred HHHHHhCccccccceeeeeEEEEEecCCCCCCCCCCCeEEEEEEEeccC--CCCCccccHH-HHHHHHHHHHhhcCCccc
Q 009245 414 QKLVQMEPKALCGLELYNGIIMRYVKASNAYLGKQEDSLDFDIMYYRSK--DPMAPRLYED-VLEEIEQLAVFKYGGLPH 490 (539)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls~~~d~~~i~i~~~~~~--~~~~~~~~~~-~~~~ie~~~~~~~gGRPH 490 (539)
+.+...++..+|+.+.+.||.+||++++.+||....+.|-+++.+|+.. +|-.|+.|++ +++++|||++.+|||.||
T Consensus 389 k~l~~ie~~~~c~~~~~~pi~iR~~t~sPayl~~t~~~~~fd~~Y~~a~dyrp~~~~l~e~~~~e~lEq~al~kyna~PH 468 (518)
T KOG4730|consen 389 KDLVKIEPKSLCGLETYNPILIRYVTSSPAYLGKTSEDCDFDTTYYRAKDYRPLTPRLYEDFYFEELEQIALFKYNAKPH 468 (518)
T ss_pred hhhcccChhhhhhhhhccceeEEEecCCchhhccCcccceeeeeeeeccCCCcCCCCcchhHHHHHHHHHHHHHhcCCcc
Confidence 9999888888899999999999999999999888777888999999876 6778899999 899999997779999999
Q ss_pred cccCCCccchhHHHhCCCHHHHHHHHHhcCCCCCCcchhhhhhcCCCC
Q 009245 491 WGKNRNLVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSEWTDQMLGLKE 538 (539)
Q Consensus 491 WgK~~~~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~llg~~~ 538 (539)
|||+..+.++.+.++||++++|+++|+++||+|+|+|+|.+.+||..|
T Consensus 469 WaKn~~lafe~vi~ky~n~~~flkvr~~lDP~~lFssew~d~il~~~g 516 (518)
T KOG4730|consen 469 WAKNRNLAFEGVIRKYKNLDKFLKVRKELDPKGLFSSEWTDQILGVKG 516 (518)
T ss_pred hhhhhhhhHHHHHHhccChHHHHHHHHhcCccchhhhhhHHHHhcccC
Confidence 999999999999999999999999999999999999999999999765
No 3
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=1.5e-79 Score=651.72 Aligned_cols=448 Identities=15% Similarity=0.196 Sum_probs=346.2
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
...|+||++++.+.|..+++|+|++||+++|+.|++++.+|+++ |||||+++++++. +.+|||++||+|+++|.++
T Consensus 48 ~~~w~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~-GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~ 123 (541)
T TIGR01676 48 LHTVSNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPV-GSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEK 123 (541)
T ss_pred cccccccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEE-CCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCC
Confidence 47789999999999999999999999999999999999999999 8999999988874 5689999999999999999
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
++|+|+||+++.||.+.|.++|+++++++++..+||||+++||+||++. ++|.++|+|+++++|+++|+ +++
T Consensus 124 ~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGtg~--~~G~l~d~V~~l~lVta~G~------vv~ 195 (541)
T TIGR01676 124 KRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQVGAHGTGA--KLPPIDEQVIAMKLVTPAKG------TIE 195 (541)
T ss_pred CEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccccCCcCCCC--CCCCHHHhEEEEEEEECCCC------EEE
Confidence 9999999999999999999999999999999999999999999999987 48999999999999999998 888
Q ss_pred cCC-Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcccccceeEEEecCCCceeeeeccc
Q 009245 208 LNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEFADITWYPSQRKAAYRVDDR 285 (539)
Q Consensus 208 ~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~ 285 (539)
+++ +++| |+++++|+|+|||||++|||++|.+.+.......+.+++++.+++++++++|++|+|+|+++.+++...|+
T Consensus 196 ~s~~~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~~~~~e~l~~~~~~~~~~~h~~f~wfP~t~~~~~~~~~~ 275 (541)
T TIGR01676 196 ISKDKDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFISNMKDIKKNHKKFLADNKHVKYLHIPYTDAIVVVTCNP 275 (541)
T ss_pred ECCCCCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEecCHHHHHHHHHHHHhcCCcEEEEEEcCCCceeEEEcCC
Confidence 887 5788 99999999999999999999999999877777789999999999999999999999999999999999888
Q ss_pred cCCCCC-CCCcccccCc---cchhHHHHHH-hhh---cHHHH-----hhccccCccc----cccchhhhhhhhhhccccc
Q 009245 286 ISSNTS-GNGLYNFFPF---RPMLSVAMAV-VRA---TEENQ-----ESLRDADGKC----IGGKLVTSTLNAFAFGLTN 348 (539)
Q Consensus 286 ~p~~~~-~~~~~~~~~~---~~~~~~~~~~-~r~---~~~~~-----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 348 (539)
++.... ....+.+... ++...+-.+. ..+ ..+.. ..+..+...+ ...+..+.....++.-...
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~l~~~~~~~in~~~~~ 355 (541)
T TIGR01676 276 ISKSRGPPKFKPKYTSEEAIQHVRDLYRESLKKYRGQVADSASEEPDIDEFSFTELRDKLLALDPLNKEHVIEINKAEAE 355 (541)
T ss_pred CCcccCCCCccccccchhhhhhhhhhhhhhhhhhhcccccccccccchhhhHHHHHHHHHhhCCcccchhHHHHHHHHHH
Confidence 653211 0000000000 0000000000 000 00000 0000000000 1011111111111110000
Q ss_pred CCeeeeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEech-------hHHHHHHHHHHHHHhCc
Q 009245 349 DGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALS-------VVKNFIQDIQKLVQMEP 421 (539)
Q Consensus 349 ~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~-------~~~~~l~~v~~~~~~~~ 421 (539)
......+ ..++++++++.. .|. ..++++||+||.+ +..++|++|+++++++.
T Consensus 356 ~~~~s~~-~~v~~S~~vf~~-------------~~~-------f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~~~ 414 (541)
T TIGR01676 356 FWRKSEG-YKVGWSDEILGF-------------DCG-------GHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEKEN 414 (541)
T ss_pred HhhcCCc-eEeCcHHHhcCc-------------ccc-------cceEEEEEEEecccccccccchHHHHHHHHHHHHhcC
Confidence 0000111 257888888731 233 2467789999999 66999999999999753
Q ss_pred cccccceeeeeEEEEEecCCCCCCCC--CCC----eEEEEEEEeccCCCC--CccccHHHH---HHHHHHHHhhcCCccc
Q 009245 422 KALCGLELYNGIIMRYVKASNAYLGK--QED----SLDFDIMYYRSKDPM--APRLYEDVL---EEIEQLAVFKYGGLPH 490 (539)
Q Consensus 422 ~~~~~~~~~~pi~~Rfv~~d~~~Ls~--~~d----~~~i~i~~~~~~~~~--~~~~~~~~~---~~ie~~~~~~~gGRPH 490 (539)
++++||||+||+++|++|||| +|| +|||+|++|++..+. .+.-.++|| ..+|++++..||||||
T Consensus 415 -----~~~~fPiEvR~ta~Dd~~LSpa~~r~~~~~s~~I~v~~y~~~~~~~~~~~~~~~~f~~~~~~e~i~~~~ygGRPH 489 (541)
T TIGR01676 415 -----IPAPAPIEQRWTACSKSPMSPASSSADDDIFSWVGIIMYLPTMDARQRKEITEEFFHYRHLTQALLWDHFSAFEH 489 (541)
T ss_pred -----CCCCCCeEEEeecCCCcccCCccCCCCCCceEEEEEEecCCCCChhhhhhhHHHHHhhhHHHHHHHHHhcCCccC
Confidence 357999999999999999998 578 799999999976310 001124888 7778885666699999
Q ss_pred cccCCCc-cchh-------HHHhCCCHHHHHHHHHhcCCCCCCcchhhhhhc
Q 009245 491 WGKNRNL-VFDG-------VIKKYKNAGEFLKVKQKFDPLGLFSSEWTDQML 534 (539)
Q Consensus 491 WgK~~~~-~~~~-------l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~ll 534 (539)
|||.|.+ +.++ ++++|| |++|+++|+++||+|+|+|+|+++||
T Consensus 490 WgK~h~~~~~~~l~~~yprl~~~YP-~d~F~~~R~~lDP~g~F~N~yL~~lf 540 (541)
T TIGR01676 490 WAKIEVPKDKDELAALQARLKKKFP-VDASNKARKALDPNKILSNNKLEKLF 540 (541)
T ss_pred cceecCCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHhCCCCccccHHHHHhh
Confidence 9999999 9999 777777 79999999999999999999999997
No 4
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3e-79 Score=646.73 Aligned_cols=428 Identities=22% Similarity=0.343 Sum_probs=347.6
Q ss_pred ccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCE
Q 009245 50 SYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMT 129 (539)
Q Consensus 50 ~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~ 129 (539)
.|+||++++.+.|..++.|+|++||+++|+.|++++++|+++ |+|||++++++++ +++|||++||+++++|.++++
T Consensus 3 ~w~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~-G~GhS~s~~~~~~---gvvIdl~~l~~i~~id~~~~~ 78 (438)
T TIGR01678 3 QFQNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVV-GGGHSPSDIACTD---GFLIHLDKMNKVLQFDKEKKQ 78 (438)
T ss_pred eEEeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEE-CCCCCCCCCccCC---eEEEEhhhcCCceEEcCCCCE
Confidence 588999999999999999999999999999999999999999 8899999888764 899999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcC
Q 009245 130 VTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLN 209 (539)
Q Consensus 130 vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~ 209 (539)
|+|+||+++.+|.+.|.++|+++++.++++.+||||++++|+||++. ++|.++|+|+++++|+++|+ +++++
T Consensus 79 vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~~~--~~G~~~d~V~~l~vV~~~G~------i~~~s 150 (438)
T TIGR01678 79 ITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGSSI--KHGILATQVVALTIMTADGE------VLECS 150 (438)
T ss_pred EEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcCCCCCCcc--ccCcHHhhEEEEEEEcCCCc------EEEeC
Confidence 99999999999999999999999999998889999999999999875 58999999999999999999 99998
Q ss_pred C-Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcccccceeEEEecCCCceeeeeccccC
Q 009245 210 E-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEFADITWYPSQRKAAYRVDDRIS 287 (539)
Q Consensus 210 ~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~p 287 (539)
+ +++| |+++++++|+|||||++|||++|.+.+.......+.+++.+.++++.++++|++++|+|++++++++..++++
T Consensus 151 ~~~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~ 230 (438)
T TIGR01678 151 EERNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETSFVSTLKELLDNWDSHWKSSEFFRVLWFPYTENVVIWRQNKTN 230 (438)
T ss_pred CCCChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEEecCCHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEECccCC
Confidence 7 5677 9999999999999999999999999988777777889999999999999999999999999999988888865
Q ss_pred CCCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCccccccchhhhhhhhhhcccccCCeeeeccccccccccccc
Q 009245 288 SNTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIGGKLVTSTLNAFAFGLTNDGVVFAGYPVIGYQNRLQS 367 (539)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~ 367 (539)
... ......+.+ . .......+.+... ..|.. ...++ +..+.....-.....+..+.++++++++.
T Consensus 231 ~~~-~~~~~~~~~---~-----~~~~~~~~~l~~~----~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 295 (438)
T TIGR01678 231 KAP-SSPSNSFWD---Y-----KLGFFLYEFLLWT----SKYLP-CLTPW-IERFFFWMLYGEKSSTKKESSNLSHKIFT 295 (438)
T ss_pred CCc-ccccchhhh---h-----hHHHHHHHHHHHH----Hhhcc-cccHH-HHHHHHHhhcCCccCCCcceecchHHhhc
Confidence 321 111111110 0 0000001111100 01100 00010 01111111000000112246677777753
Q ss_pred cccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeeeEEEEEecC---CCCC
Q 009245 368 SGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNGIIMRYVKA---SNAY 444 (539)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~pi~~Rfv~~---d~~~ 444 (539)
+.|.| .++++||+||++++.++|++|++++++.+... +.+++|||||||+++ ||+|
T Consensus 296 -------------~~~~f-------~~~~~Ey~vP~~~~~~al~~l~~~~~~~~~~~-~~~v~fpiEvR~~~~~~~Dd~w 354 (438)
T TIGR01678 296 -------------MECRF-------SQHVQEWGIPREKTKEALLELKAMLEAHAKNK-EVYAHYPVEVRFTRGTLPDECL 354 (438)
T ss_pred -------------cccee-------ehhceeecccHHHHHHHHHHHHHHHHhccccc-CceEeeeEEEEEeCCCCCCcee
Confidence 13444 35678999999999999999999999865321 467999999999999 9999
Q ss_pred CCC--CCCeEEEEEEEeccCCCCCccccHHHHHHHHHHHHhhcCCccccccCCC-ccchhHHHhCCCHHHHHHHHHhcCC
Q 009245 445 LGK--QEDSLDFDIMYYRSKDPMAPRLYEDVLEEIEQLAVFKYGGLPHWGKNRN-LVFDGVIKKYKNAGEFLKVKQKFDP 521 (539)
Q Consensus 445 Ls~--~~d~~~i~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~gGRPHWgK~~~-~~~~~l~~~YP~~~~F~~~r~~~DP 521 (539)
||| +||+|||+|++|++++.+.| +++||+++|++ +.+|||||||||+|. ++.++++++||+|++|+++|+++||
T Consensus 355 LSp~~~rds~~i~~~~y~~~~~~~~--~~~~f~~~E~i-~~~~gGRPHWgK~h~~~~~~~l~~~YP~~~~F~~vr~~~DP 431 (438)
T TIGR01678 355 LSPCFQVDTCYINAIMYRPFGKDVP--RLDYFLAYETI-MKKFGGKPHWAKAHNVCKQKDFEEMYPTLHKFCDIRKKLDP 431 (438)
T ss_pred cCCCCCCceEEEEEEEccCCCCCCC--HHHHHHHHHHH-HHHcCCCCCchhcccccCHHHHHHHCcCHHHHHHHHHhhCc
Confidence 998 59999999999998764444 88999999999 899999999999999 8899999999999999999999999
Q ss_pred CCCCcch
Q 009245 522 LGLFSSE 528 (539)
Q Consensus 522 ~g~F~n~ 528 (539)
+|+|.|+
T Consensus 432 ~g~F~N~ 438 (438)
T TIGR01678 432 TGVFLNS 438 (438)
T ss_pred ccccCCC
Confidence 9999996
No 5
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=1e-77 Score=642.80 Aligned_cols=452 Identities=17% Similarity=0.243 Sum_probs=351.5
Q ss_pred cccccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEee
Q 009245 45 CTITNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLD 124 (539)
Q Consensus 45 ~~~~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id 124 (539)
.+-...|+||++++.+.|..++.|+|++||+++|+.|++++++|+++ |+|||++++++++ +.+|||++||+++++|
T Consensus 80 ~~~~~~~~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~Vrvv-GsGhS~~~l~~td---~glIdL~~l~~Il~vD 155 (573)
T PLN02465 80 PEDLHTVSNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPV-GSGLSPNGLAFSR---EGMVNLALMDKVLEVD 155 (573)
T ss_pred CccchhccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCcCCCCeeeCC---CEEEECcCCCCcEEEe
Confidence 33457899999999999999999999999999999999999999999 7899999988764 5689999999999999
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCccccee
Q 009245 125 VQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVN 204 (539)
Q Consensus 125 ~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~ 204 (539)
.++++|||+||+++.+|.+.|.++|+++++++++..+||||++++|+||++. .+|.++|+|+++++|+++|+
T Consensus 156 ~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGtG~--~~g~i~d~V~~l~lVta~G~------ 227 (573)
T PLN02465 156 KEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQVGAHGTGA--RIPPIDEQVVSMKLVTPAKG------ 227 (573)
T ss_pred CCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhhCCCCCcCC--CcCcHhheEEEEEEEECCCC------
Confidence 9999999999999999999999999999999999899999999999999987 47899999999999999998
Q ss_pred EEEcCC-Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcccccceeEEEecCCCceeeee
Q 009245 205 VRVLNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEFADITWYPSQRKAAYRV 282 (539)
Q Consensus 205 v~~~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~ 282 (539)
++++++ +++| |+++++++|.|||||++|||++|.+++.......+.+++.+.+++++++++|++++|+|+++.+++..
T Consensus 228 vv~~s~~~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~~~~~~~~~~~~~~~~~~~h~~f~wfP~td~~~v~~ 307 (573)
T PLN02465 228 TIELSKEDDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFVSNRKEIKKNHKKWLSENKHIRYMWIPYTDTVVVVT 307 (573)
T ss_pred EEEECCCCCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEEecHHHHHHHHHHHHHhCcccceeecCCcceEEEEe
Confidence 888887 5677 99999999999999999999999999877777788899999999999999999999999999999998
Q ss_pred ccccCCCCCCCCcc-ccc---CccchhHHHHHH-hhhc------HHHHhhcccc-CccccccchhhhhhhhhhcccccCC
Q 009245 283 DDRISSNTSGNGLY-NFF---PFRPMLSVAMAV-VRAT------EENQESLRDA-DGKCIGGKLVTSTLNAFAFGLTNDG 350 (539)
Q Consensus 283 ~~~~p~~~~~~~~~-~~~---~~~~~~~~~~~~-~r~~------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (539)
.++++......... .+. ..++...+..+. .+.. ++....++.. ...+...+..++....++.-.....
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~p~~~~~vn~~~~~~~ 387 (573)
T PLN02465 308 CNPLSKWKEPPKIKPKYSEDERVQPLRDLYKESAGTKSSENPEPDIQEMGFGELRDKLLALDPLDPDHVKRVNAAEAEFW 387 (573)
T ss_pred CCCCCCccCCcccccccchhhhhhhhhhhhhhhccccccccccccccccchHHHHHHHhhcCccchhhhHHHHHHHHHHh
Confidence 88764321110000 010 000000000000 0000 0000000000 0001111111111222211000000
Q ss_pred eeeeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEech-------hHHHHHHHHHHHHHhCccc
Q 009245 351 VVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALS-------VVKNFIQDIQKLVQMEPKA 423 (539)
Q Consensus 351 ~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~-------~~~~~l~~v~~~~~~~~~~ 423 (539)
....+ ..++|+++++.. .|.+ .++++||+||.+ +..++|++|+++++++.
T Consensus 388 ~~s~~-~~v~~S~~if~~-------------~~~~-------~q~~~EyaiP~~~~~~~~~~~~~~l~el~~~i~~~~-- 444 (573)
T PLN02465 388 RRSEG-YRVGWSDEILGF-------------DCGG-------QQWVSEVCFPAGTLAKPSMKDLEFMEELLALIEKEG-- 444 (573)
T ss_pred hcCCC-cEeCcHHHhcCc-------------cccc-------eeEEEEEEEeccccccccccHHHHHHHHHHHHHhcC--
Confidence 11111 257888888731 3332 467789999999 66799999999999753
Q ss_pred cccceeeeeEEEEEecCCCCCCCC--C----CCeEEEEEEEeccCCC-C----CccccHHHH-HHHHHHHHhhcCCcccc
Q 009245 424 LCGLELYNGIIMRYVKASNAYLGK--Q----EDSLDFDIMYYRSKDP-M----APRLYEDVL-EEIEQLAVFKYGGLPHW 491 (539)
Q Consensus 424 ~~~~~~~~pi~~Rfv~~d~~~Ls~--~----~d~~~i~i~~~~~~~~-~----~~~~~~~~~-~~ie~~~~~~~gGRPHW 491 (539)
++++||||+||+++|++|||| + +++|||+|++|.+.+. . .-+.+++|| +++|+| +.+|||||||
T Consensus 445 ---~~~~fPiE~R~ta~dd~~LSpa~~~~~d~~s~~I~i~~Y~~~~~~~~~~~~~~~~~~yf~~~~e~i-~~~yggRPHW 520 (573)
T PLN02465 445 ---IPAPAPIEQRWTASSSSPMSPASSPSPDDLHSWVGIIMYLPTEDERQRKEITEEFFHYRKKTQRNL-WDKYSAYEHW 520 (573)
T ss_pred ---CCCCCceEEEeecCCccccCcccCCCCCCceEEEEEEeccCCChhhhhhhhhHHHHHHHHHHHHHH-HHHcCCCccc
Confidence 357999999999999999998 5 4499999999997741 0 001234888 999999 8999999999
Q ss_pred ccCCC--------ccchhHHHhCCCHHHHHHHHHhcCCCCCCcchhhhhhcCC
Q 009245 492 GKNRN--------LVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSEWTDQMLGL 536 (539)
Q Consensus 492 gK~~~--------~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~llg~ 536 (539)
||.|. ++.++|+++|| |++|+++|+++||+|+|+|+|+++|||.
T Consensus 521 gK~h~~~~~~~~~~~~~~L~~~YP-~d~F~~~R~~lDP~g~f~N~~L~~lf~~ 572 (573)
T PLN02465 521 AKIEVPKDKEELEALRERLRKRFP-VDAFNKARKELDPKGILSNNLLEKLFPK 572 (573)
T ss_pred ceeccccccchhhcCHHHHHhhCC-HHHHHHHHHHhCCCCccCCHHHHHhhCC
Confidence 99999 99999999999 9999999999999999999999999985
No 6
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.2e-76 Score=622.41 Aligned_cols=415 Identities=24% Similarity=0.356 Sum_probs=341.9
Q ss_pred cCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEE
Q 009245 51 YGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTV 130 (539)
Q Consensus 51 ~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~v 130 (539)
|+||++++.+.|.++++|+|++||+++|+.|++ +|+++ |+|||+++++++ ++++|||++||+|+++|+++++|
T Consensus 1 w~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~-G~Ghs~~~~~~~---~g~~idl~~l~~i~~~d~~~~~v 73 (419)
T TIGR01679 1 WSNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAV-GSGHSFTDLACT---DGTMISLTGLQGVVDVDQPTGLA 73 (419)
T ss_pred CcCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEE-eCCCCCCCcccC---CCEEEEhhHcCCceeecCCCCEE
Confidence 789999999999999999999999999999963 79999 789999988765 38999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC
Q 009245 131 TVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE 210 (539)
Q Consensus 131 tv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~ 210 (539)
+|+||+++.||.+.|.++|+++++.+++..+||||++++++||++. ++|.++|+|+++++|++||+ ++++++
T Consensus 74 ~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~g~--~~G~~~d~V~~l~vV~a~G~------v~~~~~ 145 (419)
T TIGR01679 74 TVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALGTATHGTGV--RFQALHARIVSLRLVTAGGK------VLDLSE 145 (419)
T ss_pred EEcCCCCHHHHHHHHHHcCCccccCCCCCCceeccceecCCCCCCc--cCCchhhhEEEEEEEcCCCC------EEEEcC
Confidence 9999999999999999999999999999889999999999999986 58999999999999999999 999987
Q ss_pred -Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcccccceeEEEecCCCceeeeeccccCC
Q 009245 211 -SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEFADITWYPSQRKAAYRVDDRISS 288 (539)
Q Consensus 211 -~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~p~ 288 (539)
+++| |++++||+|+|||||++|||++|.+++.......+.+++.+.++++++.++|++++|+|+++++++...++++.
T Consensus 146 ~~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 225 (419)
T TIGR01679 146 GDDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDWRRPLAQTLERLDEFVDGHRHFEFYVFPFAGKALTITMDRSDE 225 (419)
T ss_pred CCCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEEecCHHHHHHHHHHHHhcCCeEEEEEecCCCeEEEEECCcCCC
Confidence 5788 99999999999999999999999999888888889899999999999999999999999999999999888763
Q ss_pred CCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCccccccchhhhhhhhhhcccccCCeeeecccccccccccccc
Q 009245 289 NTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIGGKLVTSTLNAFAFGLTNDGVVFAGYPVIGYQNRLQSS 368 (539)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~ 368 (539)
.+.... ... +. ........ .|...+..+...........+ .+.....++..++++.+
T Consensus 226 ~~~~~~--~~~---~~-----~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~~~~ 282 (419)
T TIGR01679 226 QPKPRQ--RDV---DE-----NFLGGLRL----------LRQTLRRFPSLRPRLNRLMTN---MMSSETVVDRAYKVFAT 282 (419)
T ss_pred cccccc--cch---hh-----hHHHHHHH----------HHHhcccCchhHHHHHHHHHh---hcCCceeeccceEEecc
Confidence 221100 000 00 00000000 011111111111111110000 01111123444454321
Q ss_pred ccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeeeEEEEEecCCCCCCCC-
Q 009245 369 GTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNGIIMRYVKASNAYLGK- 447 (539)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls~- 447 (539)
+ +..+|.|+||+||.+++.++|++|+++++++.. ..++|||+||+++|++||||
T Consensus 283 -----------------~---~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~-----~~~~pve~R~~~ad~~~LS~~ 337 (419)
T TIGR01679 283 -----------------Q---RKVRFNEMEYHLPRENGRKALQEVIDLVERRSP-----PVMFPIEVRFSAPDDSWLSPF 337 (419)
T ss_pred -----------------c---ccceeeEEEEecchhHHHHHHHHHHHHHHhcCC-----CccceEEEEEecCCCcccCCC
Confidence 1 235689999999999999999999999997532 46899999999999999996
Q ss_pred -CCCeEEEEEEEeccCCCCCccccHHHHHHHHHHHHhhcCCccccccCCCccchhHHHhCCCHHHHHHHHHhcCCCCCCc
Q 009245 448 -QEDSLDFDIMYYRSKDPMAPRLYEDVLEEIEQLAVFKYGGLPHWGKNRNLVFDGVIKKYKNAGEFLKVKQKFDPLGLFS 526 (539)
Q Consensus 448 -~~d~~~i~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~gGRPHWgK~~~~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~ 526 (539)
++|+|+|++++|... .+++||+++|+| +.+|||||||||+|.+++++|+++||+|++|+++|+++||+|+|+
T Consensus 338 ~~r~~~~ia~~~~~~~------~~~~~~~~~e~i-~~~~gGRpHwgK~~~l~~~~l~~~YP~~~~F~~~r~~~DP~g~F~ 410 (419)
T TIGR01679 338 YGRPTCSIAVHQYAGM------DFESYFRAVEPI-FRRYAGRPHWGKRHYLTAATLRERYPRWDDFAAVRDDLDPDRRFL 410 (419)
T ss_pred CCCCcEEEEEEEcCCC------CHHHHHHHHHHH-HHHcCCCCCchhccCCCHHHHHHHCcCHHHHHHHHHHhCCCCccC
Confidence 799999999998754 288999999999 899999999999999999999999999999999999999999999
Q ss_pred chhhhhhcC
Q 009245 527 SEWTDQMLG 535 (539)
Q Consensus 527 n~~~~~llg 535 (539)
|+|+++|||
T Consensus 411 n~~~~rl~~ 419 (419)
T TIGR01679 411 NPYTRGLFG 419 (419)
T ss_pred CHHHHHhhC
Confidence 999999996
No 7
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=7.1e-54 Score=408.86 Aligned_cols=196 Identities=63% Similarity=1.110 Sum_probs=186.2
Q ss_pred hhhcccccCCee--eeccccccccccccccccccccccccccccccCCCccc-CcceeeeEEEEechhHHHHHHHHHHHH
Q 009245 341 AFAFGLTNDGVV--FAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRIN-GEFFHQTTFSVALSVVKNFIQDIQKLV 417 (539)
Q Consensus 341 ~~~~~~~~~~~~--~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~iP~~~~~~~l~~v~~~~ 417 (539)
..++|+.|++.. |+++||||++++|+++|+|++++.+.+...|.||++++ +.+|+||||+||++++.++|++|++++
T Consensus 6 ~~~~g~~~~~~~~~f~g~pv~g~q~~~~~sg~c~~~~~~~~~~~c~wd~r~~~g~~F~E~EyaVP~e~~~~aL~elr~l~ 85 (257)
T PLN00107 6 AGHLAKQRRGVIPPFPGAAVIGSQDRIMSSGACLDGADDGLITACPWDPRIKHGEFFFQSAISVPLSGAAAFINDIKALR 85 (257)
T ss_pred hhhhCcccCCccccccCCceeccccccccccccccCccccccccCCCCccccCCcceEEEEEEecHHHHHHHHHHHHHHH
Confidence 356788887766 99999999999999999999999998888999999998 999999999999999999999999999
Q ss_pred HhCccccccceeeeeEEEEEecCCCCCCCCCCCeEEEEEEEeccC-CCCCccccHHHHHHHHHHHHhhcCCccccccCCC
Q 009245 418 QMEPKALCGLELYNGIIMRYVKASNAYLGKQEDSLDFDIMYYRSK-DPMAPRLYEDVLEEIEQLAVFKYGGLPHWGKNRN 496 (539)
Q Consensus 418 ~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls~~~d~~~i~i~~~~~~-~~~~~~~~~~~~~~ie~~~~~~~gGRPHWgK~~~ 496 (539)
++++..+|+.+++||||+|||++||+||||+||+|+|+|++|++. ++.+|+.|+++|+++|+|++.+|||||||||+|+
T Consensus 86 ~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f~eiEqial~kygGRPHWGK~h~ 165 (257)
T PLN00107 86 DIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAMEEIEQMAILKYGALPHWGKNRN 165 (257)
T ss_pred HhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHHHHHHHHHHHhcCCcCCchhccC
Confidence 998887888899999999999999999999999999999999988 6777888999999999987899999999999999
Q ss_pred ccchhHHHhCCCHHHHHHHHHhcCCCCCCcchhhhhhcCC
Q 009245 497 LVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSEWTDQMLGL 536 (539)
Q Consensus 497 ~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~llg~ 536 (539)
+++++++++||+|++|+++|+++||+|+|+|+|++++||.
T Consensus 166 l~~~~l~~lYPr~~dFlavR~~lDP~G~F~N~yl~rllg~ 205 (257)
T PLN00107 166 AAFDGAIAKYKKAGEFLKVKERLDPEGLFSSEWSDKILGL 205 (257)
T ss_pred CCHHHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHHhCc
Confidence 9999999999999999999999999999999999999987
No 8
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=1.7e-42 Score=369.16 Aligned_cols=427 Identities=19% Similarity=0.234 Sum_probs=289.3
Q ss_pred ccCCCCCCCccCccEEEeCCCHHHHHHHHHHHH--HcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCC------ce
Q 009245 50 SYGMFPDRSVCKAANVAYPASEQELISIVAAAA--MTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNR------VL 121 (539)
Q Consensus 50 ~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~--~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~------ii 121 (539)
.-+||++...+.|.+|++|+|++||+++|+.|+ +++.+|+++ |+|||+++++.+ .+|++|||++||+ ++
T Consensus 53 ~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~r-GgGHS~~G~a~~--~~GivIdms~Ln~i~~~~~ii 129 (525)
T PLN02441 53 ASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAAR-GHGHSLNGQAQA--PGGVVVDMRSLRGGVRGPPVI 129 (525)
T ss_pred HhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEE-CCCcCCCCCccC--CCeEEEECCCCCCcCccCceE
Confidence 347999999999999999999999999999997 568899999 899999988875 3699999999999 68
Q ss_pred EeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCccc
Q 009245 122 KLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEE 201 (539)
Q Consensus 122 ~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~ 201 (539)
++|.+..+|+|+||++|.++.+.+.++|+++++.+++..+||||+++++++|.... ++|.++|+|++++||+++|+
T Consensus 130 ~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~-ryG~~~d~Vl~leVVtadGe--- 205 (525)
T PLN02441 130 VVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAF-RHGPQISNVLELDVVTGKGE--- 205 (525)
T ss_pred EEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCcccccc-ccCcHHHhEEEEEEEeCCce---
Confidence 89999999999999999999999999999999988888999999999955444444 68999999999999999999
Q ss_pred ceeEEEcCC-Cccc-ccccccccccceeeEEeEEEeEEcCcc--cEEEEecCcchHHHHHHHhcc-----cccceeEEEe
Q 009245 202 FVNVRVLNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKR--SIAYVQKSDSDLGDQAAIFGH-----RHEFADITWY 272 (539)
Q Consensus 202 ~~~v~~~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~w~ 272 (539)
++++++ +++| |++++||+|+|||||++|||++|.++. .+...+.+.+++.+.++.+++ .++|++++|+
T Consensus 206 ---vv~~s~~~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~~~~~d~veg~~~ 282 (525)
T PLN02441 206 ---VVTCSPTQNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPPENSFDYVEGFVI 282 (525)
T ss_pred ---EEEeCCCCChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCCCCCcceEeEEEE
Confidence 999987 6788 999999999999999999999999984 344556677888888888776 7899999999
Q ss_pred cC-CCceeeeeccccCCCCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCcccc-ccchh----h----hhhhhh
Q 009245 273 PS-QRKAAYRVDDRISSNTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCI-GGKLV----T----STLNAF 342 (539)
Q Consensus 273 p~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~----~----~~~~~~ 342 (539)
|+ ++.+..+.. ++.+ +.+... .. . +.+.+ .+..|. ..+.. . .....+
T Consensus 283 p~~~~~~~~~~~--~~~~-~~~~~~---------~~-----~-----~~~~~-~~~y~le~~~~~~~~~~~~~~~~~~~l 339 (525)
T PLN02441 283 VNRNGLINNWRS--SFFS-PSDPVR---------AS-----S-----LPSDG-GVLYCLEVAKYYDEDTSDTVDQEVESL 339 (525)
T ss_pred eCCCCceeeeec--ccCC-ccccch---------hh-----c-----cccCC-ceEEEEEEEEeeCCCCccchhhHHHHH
Confidence 99 555443321 1111 000000 00 0 00000 000110 00000 0 000011
Q ss_pred hcccc-cCCe-eeeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHHHHHHHhC
Q 009245 343 AFGLT-NDGV-VFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDIQKLVQME 420 (539)
Q Consensus 343 ~~~~~-~~~~-~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~ 420 (539)
..++. ..+. ..++.+++.+.+++... +..+.....|+..+ .+ .+.+||-+++.+|.+.+.+-+-.+
T Consensus 340 l~~L~~~~~~~~~~d~~y~~fl~rv~~~-------e~~lr~~G~W~~ph---PW--lnlfvp~s~i~~f~~~v~~~i~~~ 407 (525)
T PLN02441 340 LKRLSFIPGLLFTTDVSYVDFLDRVHVE-------ELKLRSKGLWEVPH---PW--LNLFVPKSRIADFDDGVFKGILLD 407 (525)
T ss_pred HhhcCCCCCCceecccCHHHHHHhhhhH-------HHHHhhcCCcCCCC---ch--hheeCcHHHHHHHHHHHHhhcccc
Confidence 11111 0111 12334455555555322 12223356775332 23 678999999999999997766533
Q ss_pred ccccccceeeeeEEEEEecCCCCCCC---CCCCeEEEEEEEeccCCCCCccccHHHHHHHHHHH--HhhcCC-----ccc
Q 009245 421 PKALCGLELYNGIIMRYVKASNAYLG---KQEDSLDFDIMYYRSKDPMAPRLYEDVLEEIEQLA--VFKYGG-----LPH 490 (539)
Q Consensus 421 ~~~~~~~~~~~pi~~Rfv~~d~~~Ls---~~~d~~~i~i~~~~~~~~~~~~~~~~~~~~ie~~~--~~~~gG-----RPH 490 (539)
. ..|.-..+|+.. -| -+.-+| |.++..| -+...+...|+.+ ..+...++-++|+ ..+.|+ -||
T Consensus 408 ~--~~G~~liyP~~~--~~-~~~~~s~~~P~~~~~y-~v~~l~~~~p~~~-~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~ 480 (525)
T PLN02441 408 G--TNGPILVYPLNR--SK-WDNRTSAVIPDEDIFY-LVALLRSALPSGD-DLEHLLAQNKEILRFCEKAGIGVKQYLPH 480 (525)
T ss_pred c--CCCeEEEEeccc--cc-CCCCCccccCCCCeEE-EEEEcCCCCCCcc-cHHHHHHHHHHHHHHHHHcCCceEEcCCC
Confidence 2 123223344321 11 123343 4455554 3333333322211 2344444444441 344466 566
Q ss_pred cccCCCccchhHHHhC-CCHHHHHHHHHhcCCCCCCcchhhhhhcC
Q 009245 491 WGKNRNLVFDGVIKKY-KNAGEFLKVKQKFDPLGLFSSEWTDQMLG 535 (539)
Q Consensus 491 WgK~~~~~~~~l~~~Y-P~~~~F~~~r~~~DP~g~F~n~~~~~llg 535 (539)
| .+.+++++.| ++|++|.+.|++|||.+++..- +++|.
T Consensus 481 ~-----~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL~pg--q~if~ 519 (525)
T PLN02441 481 Y-----TTQEEWKRHFGPKWETFVRRKAKFDPLAILSPG--QRIFN 519 (525)
T ss_pred C-----CCHHHHHHHhcchHHHHHHHHhhCCchhhcCCC--CccCC
Confidence 5 6788899999 8999999999999999999876 55554
No 9
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=100.00 E-value=2.4e-42 Score=344.06 Aligned_cols=257 Identities=21% Similarity=0.332 Sum_probs=99.3
Q ss_pred eEEEeEEcCcccEEEEecCcchHHHHHHHhcccccceeEEEecCCCceeeeeccccCCCCCCCCcccccCccchhHHHHH
Q 009245 231 VTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGHRHEFADITWYPSQRKAAYRVDDRISSNTSGNGLYNFFPFRPMLSVAMA 310 (539)
Q Consensus 231 vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 310 (539)
|||||+|.+.+.......+.+++++.+.+++++++|++++|+|+++++++...++++.+..... +.
T Consensus 1 VTlq~~p~f~L~~~~~~~~~~e~l~~~~~~~~~~~h~e~~wfP~t~~~~v~~~~~t~~~~~~~~-~~------------- 66 (259)
T PF04030_consen 1 VTLQCVPAFRLRERERPEPLDEVLENLDELLASHDHFEFFWFPYTDKVVVKTWNRTDEPPSKPR-NW------------- 66 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc-------------
Confidence 7999999999998888889999999999999999999999999999999999988765431100 00
Q ss_pred HhhhcHHHHhhccccCccccccchhhhhhhhhhcccccCCeeeeccccccccccccccccccccccccccccccCCCccc
Q 009245 311 VVRATEENQESLRDADGKCIGGKLVTSTLNAFAFGLTNDGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRIN 390 (539)
Q Consensus 311 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (539)
..++.+. .......|...++.+...+.+....... ........++++++++.. .|
T Consensus 67 ---~~~~~l~-~~~~~~l~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-------------~~------- 121 (259)
T PF04030_consen 67 ---FDDELLG-NFAFEALLWLARWFPSLTPPINRLSFRL-LSSSPTERVDPSYRVFNF-------------DC------- 121 (259)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccccccc-cccccccccccccccccccccccccccc-cccccccccccccccccc-------------cc-------
Confidence 0000000 0001111211122222222111111000 000112356667776532 12
Q ss_pred CcceeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeeeEEEEEecCCCCCCCC--CCCeEEEEEEEeccCCCCCcc
Q 009245 391 GEFFHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNGIIMRYVKASNAYLGK--QEDSLDFDIMYYRSKDPMAPR 468 (539)
Q Consensus 391 ~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls~--~~d~~~i~i~~~~~~~~~~~~ 468 (539)
..+|+++||+||++++.++|++++++++++.. +.+++|||+||+++|++|||| ++++|||+|++|++.+...+
T Consensus 122 ~~~~~~~E~~iP~~~~~~~l~~l~~~~~~~~~----~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~~~- 196 (259)
T PF04030_consen 122 LVRFWEMEYAIPIENAPEALRELRALIDKEGG----FPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDPVP- 196 (259)
T ss_dssp -----EEEEEEEGGGHHHHHHHHHHTHHHHG------GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH---H-
T ss_pred cccceeEEEeeCHHHHHHHHHHHHHHHHHccc----CceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCcccccc-
Confidence 23578999999999999999999999998651 347999999999999999998 58899999999987642222
Q ss_pred ccHHHHHHHHHHHHhhcCCccccccCCCccchhHHHhCCCHHHHHHHHHhcCCCCCCcchhhhhh
Q 009245 469 LYEDVLEEIEQLAVFKYGGLPHWGKNRNLVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSEWTDQM 533 (539)
Q Consensus 469 ~~~~~~~~ie~~~~~~~gGRPHWgK~~~~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~~l 533 (539)
+++|++++|++ +.+|||||||||+|.+++++++++||+|++|+++|+++||+|+|+|+|++++
T Consensus 197 -~~~~~~~~e~~-~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~r~ 259 (259)
T PF04030_consen 197 -YEEFFRAFEQI-LRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKLDPQGVFLNDYLRRV 259 (259)
T ss_dssp -HHHHHHHHHHH-HGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH-TT-TT--HHHH--
T ss_pred -HHHHHHHHHHH-HHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHhCCCCCCCCHhhhcC
Confidence 88999999999 8999999999999999999999999999999999999999999999999985
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=9.5e-37 Score=328.40 Aligned_cols=414 Identities=20% Similarity=0.168 Sum_probs=267.1
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEE
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVT 131 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vt 131 (539)
.+|+ .....|..++.|+|++||+++|+.|++++++|.++ |||||+++.+.+. ++++|||++||+|+++|+++++++
T Consensus 23 ~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~pr-G~gts~~g~~~~~--~gvvl~l~~mn~i~~id~~~~~~~ 98 (459)
T COG0277 23 TDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPR-GGGTSLSGGAVPD--GGVVLDLSRLNRILEIDPEDGTAT 98 (459)
T ss_pred CCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEE-CCCCCccccccCC--CcEEEEchhhcchhccCcCCCEEE
Confidence 3454 45567899999999999999999999999999999 8999999988775 399999999999989999999999
Q ss_pred EcCCCCHHHHHHHHHHcCCccCCccccc-ccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC
Q 009245 132 VESGVTLRQVIEESAKAGLALPYGPYWW-GLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE 210 (539)
Q Consensus 132 v~aGv~l~~l~~~l~~~Gl~l~~~~~~~-~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~ 210 (539)
|+||+++.+|.++|.++|+.++..|++. .+||||+|++|+||.... +||.++|+|+++++|++||+ ++++..
T Consensus 99 v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~-~yG~~~d~v~~l~vV~~dG~------i~~~~~ 171 (459)
T COG0277 99 VQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSL-RYGLTRDNVLGLRVVLPDGE------ILRLGR 171 (459)
T ss_pred EcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccce-ecccHHHheeEEEEEcCCce------ehhhcC
Confidence 9999999999999999999999999986 899999999999998877 79999999999999999998 666655
Q ss_pred C----c--cc-ccccccccccceeeEEeEEEeEEcCcccEEEEe-cCcchHHHHHHHhcc---c-----ccceeEEEecC
Q 009245 211 S----H--QD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQ-KSDSDLGDQAAIFGH---R-----HEFADITWYPS 274 (539)
Q Consensus 211 ~----~--~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~---~-----~~~~~~~w~p~ 274 (539)
. + .| ++...||+|+|||||++||++.|.++....... .+..+.......... . ....+++.-+
T Consensus 172 ~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~- 250 (459)
T COG0277 172 KLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGVIPAALEFMDRP- 250 (459)
T ss_pred cccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCCCceeeeecchh-
Confidence 2 2 45 667779999999999999999998875443333 233322221111111 0 1111222111
Q ss_pred CCceeeeec--cccCCCCCCCCcccccCccchhHHHHHHhhhcHHHHhhccccCccccccchhhhhhhhhhcccccCCee
Q 009245 275 QRKAAYRVD--DRISSNTSGNGLYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIGGKLVTSTLNAFAFGLTNDGVV 352 (539)
Q Consensus 275 ~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (539)
........ ...|...+..-+...-+.. ........... .+.+.... ... ....
T Consensus 251 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~----~~~-------------~~~~----- 305 (459)
T COG0277 251 -IKAAEAYLGGGALPLEAPARLLVEVEGSD-EAAVDEALEAL-GELLLEHG----LAR-------------DLVV----- 305 (459)
T ss_pred -HHHHHHhccccCCCCCCceEEEEEEcCCc-HHHHHHHHHHH-HHHHHhcC----Cce-------------eEEE-----
Confidence 00000000 0111110000000000111 00000000000 11110000 000 0000
Q ss_pred eeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeee
Q 009245 353 FAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNG 432 (539)
Q Consensus 353 ~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~p 432 (539)
.....-....+..... ...+..... ..++.+++.+|.+++.++++++.+.+++... ..+
T Consensus 306 ~~~~~~~~~~~~~r~~-------------~~~~~~~~~-~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~-------~~~ 364 (459)
T COG0277 306 AQDLAEAARLWLARKG-------------ALAAAGALG-PGVIQEDVVVPLEALPEFLREILALLDKAGL-------ALR 364 (459)
T ss_pred eCCHHHHHHHHHHHHH-------------HHHHHHhhC-CCccccceeeeHHHHHHHHHHHHHHHHhcCC-------Cce
Confidence 0000000000000000 000000000 0145689999999999999999999986431 134
Q ss_pred EEEEEecCCCCCCCCCCCeEEEEEEEeccCCCCCccccHHHHHHHHHHHHhhcCCccccccCCCccchhHHHhCCC--HH
Q 009245 433 IIMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYEDVLEEIEQLAVFKYGGLPHWGKNRNLVFDGVIKKYKN--AG 510 (539)
Q Consensus 433 i~~Rfv~~d~~~Ls~~~d~~~i~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~gGRPHWgK~~~~~~~~l~~~YP~--~~ 510 (539)
+..++..+|.. +++.+................+++.++++ +.++||+++|.+...+...++...|++ |+
T Consensus 365 ~~~~~~~~dg~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~ 435 (459)
T COG0277 365 VALFGHAGDGN--------LHLNILYDVGDEAEELARAEALNEAIEAL-AVELGGSISGEHGIGRTKAEFLELEPGEAWA 435 (459)
T ss_pred eeeecccCCCc--------ceeeeccCCCccHHHHHHHHHHHHHHHHH-HHHhCCeeEEecccchhhHHHHHHHHhHHHH
Confidence 55555555442 33333332221111223356788899988 799999999999999999999999985 99
Q ss_pred HHHHHHHhcCCCCCCcchhhhh
Q 009245 511 EFLKVKQKFDPLGLFSSEWTDQ 532 (539)
Q Consensus 511 ~F~~~r~~~DP~g~F~n~~~~~ 532 (539)
.++++|++|||+|+|.+..+.+
T Consensus 436 ~~~~~k~~~DP~~i~npg~~~~ 457 (459)
T COG0277 436 LLRAIKRAFDPNGIFNPGKLFR 457 (459)
T ss_pred HHHHHHHhcCCCCCCCCCccCC
Confidence 9999999999999999987654
No 11
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.1e-33 Score=306.24 Aligned_cols=192 Identities=28% Similarity=0.307 Sum_probs=163.4
Q ss_pred cCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHH
Q 009245 60 CKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLR 139 (539)
Q Consensus 60 ~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~ 139 (539)
..|.+|++|+|++||+++|+.|++++++|.++ |||||+.+.+.+ ..++++|||++||+|+++|.++++|+||||+++.
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~pr-GgGts~~G~~~~-~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~ 209 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPY-GGATSIEGHTLA-PHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWL 209 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCCCccC-CCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHH
Confidence 46999999999999999999999999999999 788988776654 2468999999999999999999999999999999
Q ss_pred HHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC------Ccc
Q 009245 140 QVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE------SHQ 213 (539)
Q Consensus 140 ~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~------~~~ 213 (539)
+|+++|.++|+.+|..|+ ..+||||++++|+||.... +||.++|+|+++++|++||+ ++++.. ..+
T Consensus 210 ~L~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~-~yG~~~d~V~~levVl~dG~------iv~~~~~~~k~~~g~ 281 (555)
T PLN02805 210 ELNEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAV-RYGTMRDNVISLKVVLPNGD------VVKTASRARKSAAGY 281 (555)
T ss_pred HHHHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccC-ccccHHHhEEEEEEEcCCce------EEEecCccccCCCCc
Confidence 999999999999999887 4689999999999998765 78999999999999999998 665432 236
Q ss_pred c-ccccccccccceeeEEeEEEeEEcCcccEE--EEecCcchHHHHHHHhc
Q 009245 214 D-FYAAKVSLGVLGVISQVTLKLEPLFKRSIA--YVQKSDSDLGDQAAIFG 261 (539)
Q Consensus 214 d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~--~~~~~~~~~~~~~~~~~ 261 (539)
| |++++||+|+|||||++|||+.|.++.... ..+.+.++..+.+.++.
T Consensus 282 dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 282 DLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred cHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 7 999999999999999999999999874432 22223444455454433
No 12
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=9.3e-33 Score=297.37 Aligned_cols=218 Identities=18% Similarity=0.168 Sum_probs=175.2
Q ss_pred CCCCCCeecCCCCCCcccccccc-CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCC
Q 009245 29 SPPEDPIKCSSNNNSSCTITNSY-GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQ 107 (539)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~ 107 (539)
.++.+.|.++. .....| ..|.......|.+|++|+|++||+++|+.|++++++|.++ |+||+.++.+.+ ..
T Consensus 28 ~~g~~~v~~~~------~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r-G~Gt~~~gg~~~-~~ 99 (499)
T PRK11230 28 HLPGLEILHTD------EELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVAR-GAGTGLSGGALP-LE 99 (499)
T ss_pred hcCcceEEcCH------HHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEE-CCCcCcCCCccc-CC
Confidence 45666776643 112333 3444455778999999999999999999999999999998 677877666554 24
Q ss_pred CcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccc-cccceeeeeccCCCCCCCcCCCCccccc
Q 009245 108 EGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYW-WGLTVGGMLGTGAHGSSLWGRGSSVHDY 186 (539)
Q Consensus 108 ~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~-~~~tvgG~i~tg~hG~~~~~~~g~~~d~ 186 (539)
++++|||++||+|+++|+++++|+||||+++.+|+++|.++|+.++..|+. ..+||||++++|++|.... +||.+.|+
T Consensus 100 ~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~-~yG~~~d~ 178 (499)
T PRK11230 100 KGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCL-KYGLTVHN 178 (499)
T ss_pred CcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccce-eeCChhhh
Confidence 589999999999999999999999999999999999999999998877754 4589999999999998765 78999999
Q ss_pred eeEEEEEccCCCcccceeEEEcCC-----Cccc-ccccccccccceeeEEeEEEeEEcCcccEE--EEecCcchHHHHHH
Q 009245 187 AVEIRIVTPGNPEEEFVNVRVLNE-----SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIA--YVQKSDSDLGDQAA 258 (539)
Q Consensus 187 V~~~~vV~~~G~~~~~~~v~~~~~-----~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~--~~~~~~~~~~~~~~ 258 (539)
|+++++|+++|+ +++++. ..+| ++.++||+|+|||||++|||+.|.++.... ..+.+.+++.+.+.
T Consensus 179 v~~levVl~~G~------i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~ 252 (499)
T PRK11230 179 LLKVEILTLDGE------ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVG 252 (499)
T ss_pred eeEEEEEcCCCc------EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHH
Confidence 999999999999 777764 2567 888899999999999999999999885433 22223444444444
Q ss_pred Hhc
Q 009245 259 IFG 261 (539)
Q Consensus 259 ~~~ 261 (539)
++.
T Consensus 253 ~~~ 255 (499)
T PRK11230 253 DII 255 (499)
T ss_pred HHH
Confidence 443
No 13
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.98 E-value=7.8e-31 Score=277.78 Aligned_cols=188 Identities=21% Similarity=0.273 Sum_probs=157.3
Q ss_pred EEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHH
Q 009245 65 VAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEE 144 (539)
Q Consensus 65 v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~ 144 (539)
|++|+|++||+++|+.|++++++|.++ ||||++.+.+.+. .++++|||++||+|+++|+++++|+||||+++.+|.++
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~-G~Gt~~~g~~~~~-~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~ 78 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPR-GAGTGLSGGALPE-EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQA 78 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEE-CCCCCCCCCccCC-CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHH
Confidence 578999999999999999999999999 6778776666653 46899999999999999999999999999999999999
Q ss_pred HHHcCCccCCcccc-cccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC------Cccc-cc
Q 009245 145 SAKAGLALPYGPYW-WGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE------SHQD-FY 216 (539)
Q Consensus 145 l~~~Gl~l~~~~~~-~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~------~~~d-f~ 216 (539)
|.++|+.++..|+. ..+||||++++|++|.... +||.++|+|+++++|+++|+ +++++. ..+| ++
T Consensus 79 l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~-~yG~~~d~v~~l~vV~~~G~------~~~~~~~~~~~~~g~dl~~ 151 (413)
T TIGR00387 79 VEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGL-KYGTTVDYVLGLEVVTADGE------ILRIGGKTAKDVAGYDLTG 151 (413)
T ss_pred HHHcCCeeCCCCcccccceehhhhhcCCCCCcce-eeccHHhheeeEEEEeCCCC------EEEeCCcccCCCCCCChhh
Confidence 99999999877764 4589999999999997766 68999999999999999998 766543 1346 67
Q ss_pred ccccccccceeeEEeEEEeEEcCcccE--EEEecCcchHHHHHHHhc
Q 009245 217 AAKVSLGVLGVISQVTLKLEPLFKRSI--AYVQKSDSDLGDQAAIFG 261 (539)
Q Consensus 217 a~~gs~G~lGiIt~vtl~l~p~~~~~~--~~~~~~~~~~~~~~~~~~ 261 (539)
...||.|+|||||++|||+.|.++... ...+.+.++..+.+.++.
T Consensus 152 l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 152 LFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred hcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 778999999999999999999988543 233334444455554444
No 14
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=8.9e-30 Score=256.31 Aligned_cols=181 Identities=22% Similarity=0.319 Sum_probs=155.8
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHc--CCCeEEEeCCCCCCCCCcccCCCCcEEEEcC---CCCCceEeeCC
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMT--KTRIKVATRFSHSIPKLVCPAGQEGLLISTK---HLNRVLKLDVQ 126 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~--~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~---~l~~ii~id~~ 126 (539)
+.+.....-.|.+|..|+|++||++++|.|... ..||.++ |+|||..|++.+ ..+|++|.|+ .|+++..++.+
T Consensus 54 ~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaar-G~GhSl~Gqa~a-~~~GvvV~m~~~~~~~~~~~~~~~ 131 (505)
T KOG1231|consen 54 TDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAAR-GGGHSLEGQALA-TRGGVVVCMDSSLLMKDVPVLVVD 131 (505)
T ss_pred hhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeecc-CCcccccCcccc-CCCCeEEEEehhhccCCCceeecc
Confidence 445446667899999999999999999999998 6788887 789999998876 3578666554 35666667777
Q ss_pred CCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEE
Q 009245 127 AMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVR 206 (539)
Q Consensus 127 ~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~ 206 (539)
+..|.|+||..|-||++++.++||+.-...+....||||++|+++.|+... +||...++|.+++||+++|| ++
T Consensus 132 ~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~ltVGGtlsnagiggqaf-RyGpqi~NV~~LdVVtgkGe------iv 204 (505)
T KOG1231|consen 132 DLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLPLTVGGTLSNAGIGGQAF-RYGPQISNVIELDVVTGKGE------IV 204 (505)
T ss_pred cceEEeeCChhHHHHHHHHHHcCCCccCcCCccceeecceeccCcccccee-eccchhhceEEEEEEcCCCc------EE
Confidence 799999999999999999999999655555555699999999999998877 79999999999999999999 99
Q ss_pred EcCC-Cccc-ccccccccccceeeEEeEEEeEEcCcc
Q 009245 207 VLNE-SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKR 241 (539)
Q Consensus 207 ~~~~-~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~ 241 (539)
+|+. .+++ |..+.||+|+|||||++|++|+|+|+.
T Consensus 205 ~cs~r~n~~lf~~vlGglGqfGIITrArI~le~aP~~ 241 (505)
T KOG1231|consen 205 TCSKRANSNLFFLVLGGLGQFGIITRARIKLEPAPKR 241 (505)
T ss_pred ecccccCceeeeeeeccCcceeeEEEEEEEeccCCcc
Confidence 9987 6778 999999999999999999999999954
No 15
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.96 E-value=2.2e-28 Score=250.59 Aligned_cols=182 Identities=22% Similarity=0.307 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcC
Q 009245 70 SEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAG 149 (539)
Q Consensus 70 s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~G 149 (539)
.++||+++|++|++++.+|+++|+|+|++.+.. . ++++|||++||+|+++|+++.+|||+||+++.||.+.|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~-~---~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRA-L---AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCC-C---CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 479999999999999999999965556665552 2 367999999999999999999999999999999999999999
Q ss_pred CccCCccc-cc-ccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC------Cccc-cccccc
Q 009245 150 LALPYGPY-WW-GLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE------SHQD-FYAAKV 220 (539)
Q Consensus 150 l~l~~~~~-~~-~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~------~~~d-f~a~~g 220 (539)
+.++..|. .. .+||||++++|+||.... +||.++|+|+++++|+++|+ +++++. .++| |++++|
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~-~yG~~~D~Vlg~~vV~~~Ge------i~~~gg~v~kn~~G~DL~~l~~G 151 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRP-WAGAVRDFVLGTRLINGRGE------HLRFGGQVMKNVAGYDVSRLMAG 151 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCcccc-ccCCHHHhEeeEEEEcCCce------EEEeCCcccCCCCCchHHHHHhh
Confidence 99987653 33 489999999999999876 68999999999999999998 776643 2467 999999
Q ss_pred ccccceeeEEeEEEeEEcCcccEEEEe-cCcchHHHHHHHhcc
Q 009245 221 SLGVLGVISQVTLKLEPLFKRSIAYVQ-KSDSDLGDQAAIFGH 262 (539)
Q Consensus 221 s~G~lGiIt~vtl~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~ 262 (539)
|+|+|||||++|||++|.++....+.. .+..+..+.+.++..
T Consensus 152 s~GtLGVitevtlkl~P~p~~~~t~~~~~~~~~a~~~~~~~~~ 194 (352)
T PRK11282 152 SLGTLGVLLEVSLKVLPRPRAELTLRLEMDAAEALRKLNEWGG 194 (352)
T ss_pred CCchhhhheEEEEEEEecCceEEEEEEecCHHHHHHHHHHHhc
Confidence 999999999999999999886544322 244555555555553
No 16
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=211.33 Aligned_cols=214 Identities=22% Similarity=0.254 Sum_probs=170.1
Q ss_pred cccccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCC-CCCCcccCCCCc--EEEEcCCCCCce
Q 009245 45 CTITNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHS-IPKLVCPAGQEG--LLISTKHLNRVL 121 (539)
Q Consensus 45 ~~~~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs-~~~~~~~~~~~g--v~I~l~~l~~ii 121 (539)
.++.+-+.-|.+.....|+.|+.|+..+||.++|+.|.+++.-+.++ |||-| ..++.||....- +.+|++.||+++
T Consensus 144 htlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPi-GGGTSVs~al~cP~~E~R~iislDtsqmnriL 222 (613)
T KOG1233|consen 144 HTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPI-GGGTSVSNALDCPETEKRAIISLDTSQMNRIL 222 (613)
T ss_pred chHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEe-CCcccccccccCCcccceeEEEecHHhhhhee
Confidence 33444456688899999999999999999999999999999999888 55555 457778764433 446778999999
Q ss_pred EeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCccccc-ccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcc
Q 009245 122 KLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWW-GLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEE 200 (539)
Q Consensus 122 ~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~-~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~ 200 (539)
.+|.++-|+.++||++-.+|.+.|.+.|+....-|++. ..|+||.++|-+.|.-.. +||.+.|.|+.+++|+|.|.++
T Consensus 223 WidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN-~YGNIEDLVVh~~mVtP~Giie 301 (613)
T KOG1233|consen 223 WIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKN-KYGNIEDLVVHLNMVTPKGIIE 301 (613)
T ss_pred EeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeecccccccc-ccCChhHheEEEEeecCcchhh
Confidence 99999999999999999999999999999988888654 579999999999998766 7999999999999999999732
Q ss_pred cceeEEEcCCCcccccccc-cccccceeeEEeEEEeEEcCcc--cEEEEecCcchHHHHHHHhc
Q 009245 201 EFVNVRVLNESHQDFYAAK-VSLGVLGVISQVTLKLEPLFKR--SIAYVQKSDSDLGDQAAIFG 261 (539)
Q Consensus 201 ~~~~v~~~~~~~~df~a~~-gs~G~lGiIt~vtl~l~p~~~~--~~~~~~~~~~~~~~~~~~~~ 261 (539)
..-++.+.+ ..||+.... ||.|+|||||++|+|+.|.|.. +-.+.+.++++-...+.+.+
T Consensus 302 k~Cq~PRmS-~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~REvA 364 (613)
T KOG1233|consen 302 KQCQVPRMS-SGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFREVA 364 (613)
T ss_pred hhhcCCccc-CCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHHHH
Confidence 111122222 358877775 9999999999999999999874 33444444554444444433
No 17
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.92 E-value=4e-25 Score=199.25 Aligned_cols=138 Identities=30% Similarity=0.374 Sum_probs=124.1
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQV 141 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l 141 (539)
|.+|++|+|++||++++++|++++.+++++ |+||++.+.+. ..++++|||++||+++++|+++++++|+||+++.||
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~-g~G~~~~~~~~--~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVR-GGGHSWTGQSS--DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEE-SSSTTSSSTTS--STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEE-cCCCCcccccc--cCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 789999999999999999999999999999 78898876654 246999999999999999999999999999999999
Q ss_pred HHHHHHcCCccCCcc-cccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcC
Q 009245 142 IEESAKAGLALPYGP-YWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLN 209 (539)
Q Consensus 142 ~~~l~~~Gl~l~~~~-~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~ 209 (539)
.++|.++|+.++..+ ....+|+||++++|+||.... .+|.++|+|+++++|+++|+ +++++
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~-~~G~~~d~v~~~~~V~~~G~------v~~~s 139 (139)
T PF01565_consen 78 YEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSR-RYGTAADNVLSVEVVLADGE------VVRCS 139 (139)
T ss_dssp HHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHH-HHCBGGGGEEEEEEEETTSS------EEEEE
T ss_pred ccccccccccccccccccccceEchhhcCCCcccccc-ccccHHHeEEEEEEEcCCCc------EEEeC
Confidence 999999999988644 445689999999999998876 68999999999999999999 87764
No 18
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.90 E-value=6.1e-23 Score=215.87 Aligned_cols=213 Identities=21% Similarity=0.227 Sum_probs=157.7
Q ss_pred CCCCCCeecCCCCCCcccccccc-CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCC
Q 009245 29 SPPEDPIKCSSNNNSSCTITNSY-GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQ 107 (539)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~ 107 (539)
.++.+.|..+. . .+..| ..|. .....|.+|++|+|++||+++|+.|++++++|.+. |||-+.+|.+.+.+.
T Consensus 12 IvG~~~Vltd~-----~-~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPR-GgGTGLtGGAvP~~~ 83 (564)
T PRK11183 12 IVGSSHVLTDP-----A-KTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQ-AANTGLTGGSTPNGN 83 (564)
T ss_pred hcCcccEecCH-----H-HHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEe-CCCcccccCcccCCC
Confidence 45666676643 1 11122 2353 24567999999999999999999999999999877 444456676666432
Q ss_pred ----CcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCccc--ccccceeeeeccCCCCCCCcCCCC
Q 009245 108 ----EGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPY--WWGLTVGGMLGTGAHGSSLWGRGS 181 (539)
Q Consensus 108 ----~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~--~~~~tvgG~i~tg~hG~~~~~~~g 181 (539)
++|+|||.+||+|++|| ++++++|+||+++.+|.++|.++|+.++..++ ..+.||||.|+||++|.... +||
T Consensus 84 ~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl-Rgg 161 (564)
T PRK11183 84 DYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ-RGP 161 (564)
T ss_pred CCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe-Ecc
Confidence 37999999999999999 56799999999999999999999998777543 23679999999999999887 899
Q ss_pred ccccceeEEEEEccCCCc-----------c------------cc------------------eeEEEcCCC-----ccc-
Q 009245 182 SVHDYAVEIRIVTPGNPE-----------E------------EF------------------VNVRVLNES-----HQD- 214 (539)
Q Consensus 182 ~~~d~V~~~~vV~~~G~~-----------~------------~~------------------~~v~~~~~~-----~~d- 214 (539)
.+.++++. ++|+++|++ + ++ ..|+.++++ |.|
T Consensus 162 a~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl 240 (564)
T PRK11183 162 AYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADP 240 (564)
T ss_pred hhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCH
Confidence 99999999 999999995 0 00 001111111 123
Q ss_pred cccc--ccccccceeeEEeEEEeEEcCccc-EEEEecCcchH
Q 009245 215 FYAA--KVSLGVLGVISQVTLKLEPLFKRS-IAYVQKSDSDL 253 (539)
Q Consensus 215 f~a~--~gs~G~lGiIt~vtl~l~p~~~~~-~~~~~~~~~~~ 253 (539)
-+.. .||.|.|||| +++|++.|.++.. +.+...+..+.
T Consensus 241 ~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~ 281 (564)
T PRK11183 241 RRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAV 281 (564)
T ss_pred HHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHH
Confidence 2222 6999999999 9999999998854 44444444433
No 19
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.88 E-value=6.2e-23 Score=202.17 Aligned_cols=198 Identities=21% Similarity=0.264 Sum_probs=161.5
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCC-CCCCcccCCCCcEEEEcCCCCCceEeeCCCCEE
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHS-IPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTV 130 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs-~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~v 130 (539)
..|-+.+.+....+..|+|.+||++|+++|+++ ++.|++.|||+ ..|.+.| ..+.++++|.+||++.++|+-.+++
T Consensus 80 ~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~--kLAVVPQGGNTgLVGgSVP-vfDEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 80 TDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDR--KLAVVPQGGNTGLVGGSVP-VFDEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hHHHHhccCCceEEecCCCHHHHHHHHHhhccc--cEEEecCCCCcccccCccc-chHHHhhhhhhhccccccccccceE
Confidence 679889999999999999999999999999875 57778889996 3444444 4678999999999999999999999
Q ss_pred EEcCCCCHHHHHHHHHHcCCccCCccccc-ccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCc-ccceeEEEc
Q 009245 131 TVESGVTLRQVIEESAKAGLALPYGPYWW-GLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPE-EEFVNVRVL 208 (539)
Q Consensus 131 tv~aGv~l~~l~~~l~~~Gl~l~~~~~~~-~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~-~~~~~v~~~ 208 (539)
+++||+.++++..+|.++|+++|...+.. .+.|||.++|+++|.... +||+++.+|+++|+|+|+|++ +-+..+++-
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrll-RYGsLHgsvLGle~Vlp~G~vl~~~~slRKD 235 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLL-RYGSLHGSVLGLEVVLPNGTVLDLLSSLRKD 235 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEE-EecccccceeeeEEEcCCCchhhhhhhhccc
Confidence 99999999999999999999999877765 489999999999999887 799999999999999999994 221112221
Q ss_pred CCCcccccc-cccccccceeeEEeEEEeEEcCccc-EEEEec-CcchHH
Q 009245 209 NESHQDFYA-AKVSLGVLGVISQVTLKLEPLFKRS-IAYVQK-SDSDLG 254 (539)
Q Consensus 209 ~~~~~df~a-~~gs~G~lGiIt~vtl~l~p~~~~~-~~~~~~-~~~~~~ 254 (539)
+ ..-|.+. +.||.|++||||++++-+.|.++.. +.+... +.++..
T Consensus 236 N-TgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~v~ 283 (511)
T KOG1232|consen 236 N-TGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDDVQ 283 (511)
T ss_pred C-ccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHHHH
Confidence 1 1234444 4699999999999999999998853 344332 344443
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=3.9e-22 Score=202.03 Aligned_cols=171 Identities=21% Similarity=0.219 Sum_probs=135.3
Q ss_pred cccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCC-CCCceEeeCCC
Q 009245 49 NSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKH-LNRVLKLDVQA 127 (539)
Q Consensus 49 ~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~-l~~ii~id~~~ 127 (539)
..++.| ++.+.|..++.|+|++||+++++.|+++++|+.++| +||+. +..+.+.++++|++++ |+++ +.++
T Consensus 20 ~~~~t~--~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~G-gGsnl--l~~d~g~~gvvI~l~~~l~~i---~~~~ 91 (298)
T PRK13905 20 ARYTSF--RVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLG-NGSNL--LVRDGGIRGVVIRLGKGLNEI---EVEG 91 (298)
T ss_pred ccccee--ecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEe-CCceE--EecCCCcceEEEEecCCcceE---EecC
Confidence 556667 778899999999999999999999999999999995 55532 2222233589999998 8874 3456
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
.+|+|+||+.|.+|.++|.++|+.........+.||||++++|+++ +++.++|+|+++++|+++|+ +++
T Consensus 92 ~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~------~~~ 160 (298)
T PRK13905 92 NRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMNAGA-----YGGETADVLESVEVLDRDGE------IKT 160 (298)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHcCCc-----CceEhheeEEEEEEEeCCCC------EEE
Confidence 7999999999999999999999954433333346999999999866 34589999999999999998 888
Q ss_pred cCCCccccccccccccc--ceeeEEeEEEeEEcC
Q 009245 208 LNESHQDFYAAKVSLGV--LGVISQVTLKLEPLF 239 (539)
Q Consensus 208 ~~~~~~df~a~~gs~G~--lGiIt~vtl~l~p~~ 239 (539)
++.++. +++.+++.+. +||||++||++.|..
T Consensus 161 ~~~~e~-~~~yR~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 161 LSNEEL-GFGYRHSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred EEHHHc-CCcCccccCCCCCEEEEEEEEEEcCCC
Confidence 765322 5555554333 799999999999984
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.83 E-value=4.1e-20 Score=186.62 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=135.9
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
+..+++| ++.+.|.+++.|+|++||++++++|+++++|+.++|+|+|. +..+.+.++++|+++++...+. .++
T Consensus 24 l~~~tt~--~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNl---lv~d~g~~gvVI~l~~~~~~i~--~~~ 96 (302)
T PRK14652 24 LAPRTAV--RVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANT---LVADAGVRGVVLRLPQDFPGES--TDG 96 (302)
T ss_pred cccccEe--ecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcce---eecCCCEeeEEEEecCCcceEE--ecC
Confidence 3566778 88999999999999999999999999999999999655553 2333334489999977423233 345
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
.+++|+||+.+.+|.+++.++||.........+.||||++.+|++. ++|.++|+|.++++|+++|. .+
T Consensus 97 ~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaGa-----~ggei~d~v~~v~vv~~~G~-------~~ 164 (302)
T PRK14652 97 GRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAGT-----KLGEMKDVVTAVELATADGA-------GF 164 (302)
T ss_pred CEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcCCC-----CceEhhheEEEEEEECCCCc-------EE
Confidence 6999999999999999999999985555544456999999999864 58899999999999999985 34
Q ss_pred cCCCcccccccccccccceeeEEeEEEeEEcC
Q 009245 208 LNESHQDFYAAKVSLGVLGVISQVTLKLEPLF 239 (539)
Q Consensus 208 ~~~~~~df~a~~gs~G~lGiIt~vtl~l~p~~ 239 (539)
++.++..|.+....++.-||||+++|++.|..
T Consensus 165 ~~~~e~~f~YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 165 VPAAALGYAYRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred eehhhcCcccceeccCCCeEEEEEEEEEecCC
Confidence 44444446666544443489999999999964
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.82 E-value=9.8e-20 Score=182.77 Aligned_cols=174 Identities=17% Similarity=0.182 Sum_probs=141.6
Q ss_pred cccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCC
Q 009245 49 NSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAM 128 (539)
Q Consensus 49 ~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~ 128 (539)
..|++| ++.+.|..++.|+|++||++++++|+++++|+.++|+|+|.. ..+.+.++++|++++|+.+ .+|+ +.
T Consensus 2 ~~~tt~--~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll---~~d~~~~gvvi~l~~~~~~-~~~~-~~ 74 (284)
T TIGR00179 2 AEFTTY--KIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLL---ILDDGRGGVIINLGKGIDI-EDDE-GE 74 (284)
T ss_pred CCccee--ecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEE---EccCCcCeEEEECCCCceE-EEec-CC
Confidence 345666 778899999999999999999999999999999996555532 3333456899999999885 4565 57
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEc
Q 009245 129 TVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVL 208 (539)
Q Consensus 129 ~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~ 208 (539)
+++|+||+.|.+|.+++.++||.........+.||||++.+|+++. +..+.|.|+++++|+++|+ ++++
T Consensus 75 ~v~v~aG~~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mNAGay-----G~~i~d~l~~v~vv~~~G~------~~~~ 143 (284)
T TIGR00179 75 YVHVGGGENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMNAGAY-----GVEISEVLVYATILLATGK------TEWL 143 (284)
T ss_pred EEEEEcCCcHHHHHHHHHHCCCcccccCCCCCchHHHHHHHhcccc-----hhehhheEEEEEEEeCCCC------EEEE
Confidence 9999999999999999999999655544444569999999999883 4468889999999999998 8888
Q ss_pred CCCccccccccccccc--ceeeEEeEEEeEEcCc
Q 009245 209 NESHQDFYAAKVSLGV--LGVISQVTLKLEPLFK 240 (539)
Q Consensus 209 ~~~~~df~a~~gs~G~--lGiIt~vtl~l~p~~~ 240 (539)
+.++.+|.+....+-. ..||++++|++.+.+.
T Consensus 144 ~~~~~~f~YR~S~f~~~~~~iil~a~~~l~~~~~ 177 (284)
T TIGR00179 144 TNEQLGFGYRTSIFQHKYVGLVLKAEFQLTLGFG 177 (284)
T ss_pred EHHHccccCCccccCCCCcEEEEEEEEEeccccc
Confidence 8776668888766643 2699999999966654
No 23
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.82 E-value=1e-19 Score=184.17 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=140.3
Q ss_pred cccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCC
Q 009245 49 NSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAM 128 (539)
Q Consensus 49 ~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~ 128 (539)
..|+.| +..+.+..++.|+|++||++++++|+++++|+.++|+|+|. +..+.+.+|++|++++|+++ +++. .
T Consensus 26 ~~~tt~--~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNl---l~~d~g~~GvvI~l~~l~~i-~~~~--~ 97 (307)
T PRK13906 26 KRYTYT--KTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI---IIREGGIRGIVISLLSLDHI-EVSD--D 97 (307)
T ss_pred ccceEc--CcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeE---eecCCCcceEEEEecCccce-EEeC--C
Confidence 455555 66788999999999999999999999999999999544442 23333345899999889985 5653 5
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEc
Q 009245 129 TVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVL 208 (539)
Q Consensus 129 ~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~ 208 (539)
+++|+||+.+.+|.+++.++||.........+.||||++.+|+++ ++|.++|+|.++++|+++|+ ++++
T Consensus 98 ~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mNaGa-----yGg~i~D~l~~v~vv~~~G~------~~~~ 166 (307)
T PRK13906 98 AIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMNAGA-----YGGEVKDCIDYALCVNEQGS------LIKL 166 (307)
T ss_pred EEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhhCCc-----chhhhhhheeEEEEEeCCCC------EEEE
Confidence 899999999999999999999986666644456999999999976 35789999999999999998 9998
Q ss_pred CCCccccccccccccc-ceeeEEeEEEeEEc
Q 009245 209 NESHQDFYAAKVSLGV-LGVISQVTLKLEPL 238 (539)
Q Consensus 209 ~~~~~df~a~~gs~G~-lGiIt~vtl~l~p~ 238 (539)
++++.+|.+....+-. --||++++|++.|.
T Consensus 167 ~~~e~~f~YR~S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 167 TTKELELDYRNSIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred EHHHccCcCCcccCCCCCEEEEEEEEEECCC
Confidence 8877778888766654 35999999999874
No 24
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.7e-19 Score=182.60 Aligned_cols=171 Identities=17% Similarity=0.164 Sum_probs=139.7
Q ss_pred cccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCC
Q 009245 49 NSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAM 128 (539)
Q Consensus 49 ~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~ 128 (539)
..|+.| ++.+.|..++.|+|++||++++++|+++++|+.++| |||.. +..+.+.++++|+|++|+.+ +++ +.
T Consensus 26 ~~~tt~--~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~G-gGSNl--l~~d~g~~GvvI~l~~l~~i-~~~--~~ 97 (305)
T PRK12436 26 KNHTHI--KVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLG-NGSNV--IIKDGGIRGITVSLIHITGV-TVT--GT 97 (305)
T ss_pred hhccCc--ccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEc-CCeEE--EEeCCCeeEEEEEeCCcCcE-EEe--CC
Confidence 445555 678889999999999999999999999999999994 55532 22232345899999889874 665 46
Q ss_pred EEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEEc
Q 009245 129 TVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVL 208 (539)
Q Consensus 129 ~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~ 208 (539)
+++|+||+.+.+|.+++.++||.....+...+.||||++.+|+++ +++.++|.+.++++++++|+ ++++
T Consensus 98 ~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~NAGa-----yG~~~~dvl~~v~vv~~~G~------v~~~ 166 (305)
T PRK12436 98 TIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMNAGA-----YGGEISFVLTEAVVMTGDGE------LRTL 166 (305)
T ss_pred EEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhcCcc-----chhehheeeeEEEEEeCCCC------EEEE
Confidence 899999999999999999999986555555567999999999988 34578999999999999998 9998
Q ss_pred CCCccccccccccccc-ceeeEEeEEEeEEc
Q 009245 209 NESHQDFYAAKVSLGV-LGVISQVTLKLEPL 238 (539)
Q Consensus 209 ~~~~~df~a~~gs~G~-lGiIt~vtl~l~p~ 238 (539)
++++..|.+....+.. ..||++++|++.|.
T Consensus 167 ~~~e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 167 TKEAFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred EHHHhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 8766668777766653 57999999999876
No 25
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.81 E-value=2.8e-18 Score=170.07 Aligned_cols=386 Identities=18% Similarity=0.203 Sum_probs=231.5
Q ss_pred EEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeE
Q 009245 110 LLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVE 189 (539)
Q Consensus 110 v~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~ 189 (539)
.-|++..|..|+++|.+++||+|||+++++++.++|.+.|+++++.+..+..|+||.|.+-+--++++ ++|++.+.+++
T Consensus 104 ~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~Sh-kyGlfq~~~~a 182 (543)
T KOG1262|consen 104 HQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSH-KYGLFQHICTA 182 (543)
T ss_pred ccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccc-hhhhHHhhhhe
Confidence 44556666678999999999999999999999999999999999999999999999988655555555 79999999999
Q ss_pred EEEEccCCCcccceeEEEcCC--Cccc-ccccccccccceeeEEeEEEeEEcCcccEEEEecCcchHHHHHHHhcc----
Q 009245 190 IRIVTPGNPEEEFVNVRVLNE--SHQD-FYAAKVSLGVLGVISQVTLKLEPLFKRSIAYVQKSDSDLGDQAAIFGH---- 262 (539)
Q Consensus 190 ~~vV~~~G~~~~~~~v~~~~~--~~~d-f~a~~gs~G~lGiIt~vtl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~---- 262 (539)
.|+|++||+ ++++.+ ++.| |.|...|.|++|..+.+|+|+.|..+ ++...+.+...+.+--..+..
T Consensus 183 YEvVladGe------lv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~-Yvkltyip~~~l~e~c~k~~e~~~d 255 (543)
T KOG1262|consen 183 YEVVLADGE------LVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKK-YVKLTYIPVHGLDEYCKKITELSGD 255 (543)
T ss_pred eEEEecCCe------EEEecCCcccCceEEEcccccCchheeeeeEEEEEeccc-eEEEEEEecccHHHHHHHHHhhccc
Confidence 999999999 888887 4567 99999999999999999999999854 455666665554433322222
Q ss_pred -----c-ccceeEEEecCCCceeeeeccccC--CCCCCCCcccccCc-cchhHHHHHHhhhcHHHHhhccccCccccccc
Q 009245 263 -----R-HEFADITWYPSQRKAAYRVDDRIS--SNTSGNGLYNFFPF-RPMLSVAMAVVRATEENQESLRDADGKCIGGK 333 (539)
Q Consensus 263 -----~-~~~~~~~w~p~~~~~~~~~~~~~p--~~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 333 (539)
+ .+|++-.-+.-. +++....+-.. +..+.+.+|+..-| .| |-... .+..+.... .....+
T Consensus 256 sdkntk~~dfvE~liyn~~-egviMvG~fad~~dak~~~kvN~vgwwyKp-----WFykH-vet~lkkge----~~EYIP 324 (543)
T KOG1262|consen 256 SDKNTKNADFVEGLIYNKN-EGVIMVGNFADKVDAKSNAKVNDVGWWYKP-----WFYKH-VETFLKKGE----GEEYIP 324 (543)
T ss_pred ccccccccchhheeeecCC-ccEEEEEeccCccccccccccccchhhhhh-----HHHHH-HHHHHhcCC----Cceeee
Confidence 1 156665444433 33333332221 12122234442211 11 11111 122221110 000000
Q ss_pred hhhhhhhhhh---cccccCCeeeeccccccccccccccccccccccccccccccCCCcccCc---ceeeeEEEEechhHH
Q 009245 334 LVTSTLNAFA---FGLTNDGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGE---FFHQTTFSVALSVVK 407 (539)
Q Consensus 334 ~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~E~~iP~~~~~ 407 (539)
.- .....-. +-....-.+|.+-|+ .+.+-...|..... -+.... ...+|.. ....++.-||++...
T Consensus 325 lr-~YyhRHtrsifWe~~~iiPFGn~~~----FRyllgWl~PPKia-~LKaTt--~ealRkly~~~hV~QDmlvPl~kl~ 396 (543)
T KOG1262|consen 325 LR-SYYHRHTRSIFWELEDIIPFGNNPV----FRYLLGWLCPPKIA-FLKATT--GEALRKLYFAKHVFQDMLVPLDKLK 396 (543)
T ss_pred HH-HHHHhccceeEEeeeeeeecCCcHH----HHHHHHhcCCChHH-Hhhccc--HHHHHHHHHHHHHHHHhhccHHHHH
Confidence 00 0000000 000000011111111 11111222321000 000000 0000000 112367899999999
Q ss_pred HHHHHHHHHHHhCccccccceeeeeEEEEEecCCCCCCC--------CCC-CeEEEEEEEeccCC---CCCccccHHHHH
Q 009245 408 NFIQDIQKLVQMEPKALCGLELYNGIIMRYVKASNAYLG--------KQE-DSLDFDIMYYRSKD---PMAPRLYEDVLE 475 (539)
Q Consensus 408 ~~l~~v~~~~~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls--------~~~-d~~~i~i~~~~~~~---~~~~~~~~~~~~ 475 (539)
++++.+.+.++-.|-++|+..+.. .+-...|- |+. ..+|+|+..|..-+ ...+-....-++
T Consensus 397 eald~~hke~evYPiwlcP~~l~~-------qp~~Gq~~~~p~~r~~~~~~~~my~DvGvYg~pg~v~r~e~y~~~~a~R 469 (543)
T KOG1262|consen 397 EALDTFHKEFEVYPIWLCPFRLYS-------QPGQGQLRPPPKSRLVPGTNASMYNDVGVYGTPGQVERREPYNPTHAMR 469 (543)
T ss_pred HHHHHHHhhheeeeeeeeeeeccC-------CCCCceecCCccccCCCCCcceeEEecccccCCccccccCCCCHHHHHH
Confidence 999999999998888888643221 12122222 222 37999998885221 011222446789
Q ss_pred HHHHHHHhhcCCccccccCCCccchhHHHhCCCHHHHHHHHHhcCCCCCCcchhhh
Q 009245 476 EIEQLAVFKYGGLPHWGKNRNLVFDGVIKKYKNAGEFLKVKQKFDPLGLFSSEWTD 531 (539)
Q Consensus 476 ~ie~~~~~~~gGRPHWgK~~~~~~~~l~~~YP~~~~F~~~r~~~DP~g~F~n~~~~ 531 (539)
.+|.. ++.-+|---..-...++.+++.+++. -.-|.++|.++-=.|-|..-|-+
T Consensus 470 rmEkf-vr~v~Gfq~~YAd~~m~eeef~eMFd-~tLY~~~R~ky~cigaFp~vYdK 523 (543)
T KOG1262|consen 470 RMEKF-VRSVHGFQMLYADIYMSEEEFWEMFD-GTLYNQVRLKYHCIGAFPRVYDK 523 (543)
T ss_pred HHHHH-HHHccCcceeehhhhcCHHHHHHHhh-hHHHHHHHHHcCccccchHHHHh
Confidence 99998 78888877777778889999999985 37788888888888888766543
No 26
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.79 E-value=1e-18 Score=179.52 Aligned_cols=174 Identities=18% Similarity=0.166 Sum_probs=142.2
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
+..+++| ++.+.|..++.|+|++||++++++|+++++|+.++|+|+|. ++.+++.++++|+++ +++ ++++.+.
T Consensus 21 L~~~tt~--~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl---Lv~D~g~~GvVI~l~-~~~-i~i~~~~ 93 (363)
T PRK13903 21 LAPLTTL--RVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL---VIADDGFDGTVVRVA-TRG-VTVDCGG 93 (363)
T ss_pred cccccEe--ecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE---eECCCCccEEEEEeC-CCc-EEEeCCC
Confidence 3556777 88899999999999999999999999999999999666553 344444568999997 566 4677666
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccC-CCcccceeEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPG-NPEEEFVNVR 206 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~-G~~~~~~~v~ 206 (539)
.+|+|+||+.|.+|.+++.++||+........+.||||++.+|+++ ++..++|.|.++++++.+ |+ ++
T Consensus 94 ~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~------~~ 162 (363)
T PRK13903 94 GLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGE------VR 162 (363)
T ss_pred CEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCE------EE
Confidence 7999999999999999999999997766666678999999999998 345899999999999965 98 88
Q ss_pred EcCCCcccccccccccc--cceeeEEeEEEeEEcC
Q 009245 207 VLNESHQDFYAAKVSLG--VLGVISQVTLKLEPLF 239 (539)
Q Consensus 207 ~~~~~~~df~a~~gs~G--~lGiIt~vtl~l~p~~ 239 (539)
+++.++.+|.+..+.+. ..+|||+++|++.|..
T Consensus 163 ~~~~~el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 163 WVPAADLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred EEEHHHcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 88764444555544333 3789999999999874
No 27
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=2.7e-18 Score=172.38 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=141.7
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
+..+++| ++++.++.++.|+|++||+++++++++ ++|+.++|+|+|. +..+.+.++++|.+.+|+++ ++|.
T Consensus 22 L~~~tt~--~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNl---Lv~d~g~~gvVI~l~~~~~i-~i~~-- 92 (297)
T PRK14653 22 MKCHVSF--KIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNV---LPKDEPMDFVVVSTERLDDI-FVDN-- 92 (297)
T ss_pred ccccCEe--eeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeE---EEecCCccEEEEEeCCcCce-EEeC--
Confidence 3556667 889999999999999999999999999 9999999888884 34444456999999789885 7763
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
..++|+||+.|.+|..++.++||.........+.||||++.+|+++ +++.++|.|.++++++ +|+ +++
T Consensus 93 ~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~------v~~ 160 (297)
T PRK14653 93 DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKK------IIR 160 (297)
T ss_pred CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCE------EEE
Confidence 6899999999999999999999986555544477999999999998 3456999999999999 676 888
Q ss_pred cCCCccccccccccccc--ceeeEEeEEEeEEcC
Q 009245 208 LNESHQDFYAAKVSLGV--LGVISQVTLKLEPLF 239 (539)
Q Consensus 208 ~~~~~~df~a~~gs~G~--lGiIt~vtl~l~p~~ 239 (539)
++.++..|.+....++. --||++++|++.|..
T Consensus 161 ~~~~e~~f~YR~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 161 LGKNEIKFSYRNSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred EchhhccccCccccCCCCCcEEEEEEEEEEecCC
Confidence 88776668887765543 239999999998864
No 28
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=3e-18 Score=172.68 Aligned_cols=175 Identities=18% Similarity=0.096 Sum_probs=141.5
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCC-CceEeeCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLN-RVLKLDVQ 126 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~-~ii~id~~ 126 (539)
+..+++| ++++.++.++.|+|++||++++++|+++++|+.++|+|+|. +..+.+.+|++|++++++ + +..+.+
T Consensus 9 L~~~tt~--~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNl---L~~d~g~~GvVI~l~~~~~~-i~~~~~ 82 (295)
T PRK14649 9 LAPYTSW--RIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNL---LVRDEGFDGLVARYRGQRWE-LHEHGD 82 (295)
T ss_pred cccccEe--eeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeE---EEeCCCcCeEEEEecCCCcE-EEEeCC
Confidence 3556667 88999999999999999999999999999999999766663 344445679999998754 4 345555
Q ss_pred CCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEE
Q 009245 127 AMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVR 206 (539)
Q Consensus 127 ~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~ 206 (539)
..+|+|+||+.|.+|.+++.++||+........+.||||++.+|++. +++.++|.|.++++++.+|+ ++
T Consensus 83 ~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mNaGa-----yg~ei~d~l~~V~~~~~~g~------~~ 151 (295)
T PRK14649 83 TAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGNAGC-----YGGDTATVLIRAWLLLNGSE------CV 151 (295)
T ss_pred cEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhhccc-----cceEhheeEEEEEEEeCCCC------EE
Confidence 45899999999999999999999995554443445999999999988 56789999999999999998 88
Q ss_pred EcCCCcccccccccccccc---------eeeEEeEEEeEEcC
Q 009245 207 VLNESHQDFYAAKVSLGVL---------GVISQVTLKLEPLF 239 (539)
Q Consensus 207 ~~~~~~~df~a~~gs~G~l---------GiIt~vtl~l~p~~ 239 (539)
+++.++..|.+....+-.. -||++++|++.|..
T Consensus 152 ~~~~~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 152 EWSVHDFAYGYRTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred EEeHHHcCcccceeecccccccccccCCeEEEEEEEEECCCC
Confidence 8877655577776544332 39999999998864
No 29
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.73 E-value=2.6e-17 Score=164.77 Aligned_cols=174 Identities=17% Similarity=0.131 Sum_probs=145.8
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCC-CCcEEEEcCCCCCceEeeCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAG-QEGLLISTKHLNRVLKLDVQ 126 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~-~~gv~I~l~~l~~ii~id~~ 126 (539)
+..+++| ++++.+..++.|+|++|++++++.++++++|+.++|+|+|. ++.+.+ .++++|.+.+|+++ +++.
T Consensus 21 L~~~tt~--~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl---Lv~D~g~~~g~vi~~~~~~~i-~~~~- 93 (302)
T PRK14650 21 LANYTTY--KIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI---LINDEEEIDFPIIYTGHLNKI-EIHD- 93 (302)
T ss_pred cccccee--eeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE---EEECCCccceEEEEECCcCcE-EEeC-
Confidence 3556667 88999999999999999999999999999999999888883 444444 56889988678774 6653
Q ss_pred CCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEE
Q 009245 127 AMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVR 206 (539)
Q Consensus 127 ~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~ 206 (539)
..|+|+||+.|.+|..++.++||.........+.||||++.+|++. +++.++|.|.++++++.+|+ ++
T Consensus 94 -~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g~------~~ 161 (302)
T PRK14650 94 -NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMNARC-----FGNEISEILDKITFIDEKGK------TI 161 (302)
T ss_pred -CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhhCCc-----cccchheeEEEEEEEECCCC------EE
Confidence 4799999999999999999999996666666678999999999987 45689999999999999998 88
Q ss_pred EcCCCccccccccccccc-ceeeEEeEEEeEEcCc
Q 009245 207 VLNESHQDFYAAKVSLGV-LGVISQVTLKLEPLFK 240 (539)
Q Consensus 207 ~~~~~~~df~a~~gs~G~-lGiIt~vtl~l~p~~~ 240 (539)
+++.++.+|.+....+-. -.||++++|++.|..+
T Consensus 162 ~~~~~e~~f~YR~S~f~~~~~iIl~a~f~L~~~~~ 196 (302)
T PRK14650 162 CKKFKKEEFKYKISPFQNKNTFILKATLNLKKGNK 196 (302)
T ss_pred EEEHHHcCcccccccCCCCCEEEEEEEEEEcCCCH
Confidence 888776778888766543 2599999999988743
No 30
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=6.1e-17 Score=159.51 Aligned_cols=174 Identities=20% Similarity=0.171 Sum_probs=151.5
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
+..|++| ++++.++.++.|++++||.++++.+.+.+.|+.++|+|+| -+..+++.++++|.+.+++. ++++.+.
T Consensus 9 L~~~ttf--riGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSN---lLv~d~g~~gvvi~~~~~~~-~~~~~~~ 82 (291)
T COG0812 9 LKRYTTF--RIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSN---LLVRDGGIGGVVIKLGKLNF-IEIEGDD 82 (291)
T ss_pred cccceeE--ecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCce---EEEecCCCceEEEEcccccc-eeeeccC
Confidence 4667777 8889999999999999999999999999999999988888 44555566789999998866 5677776
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
.+|+|++|+.|.+|.+++.++|+......+..+.||||++.+|++. +++.++|.+.++++++.+|+ +++
T Consensus 83 ~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~------~~~ 151 (291)
T COG0812 83 GLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGE------VRW 151 (291)
T ss_pred CeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhccCcc-----cccchheeEEEEEEEcCCCC------EEE
Confidence 7999999999999999999999987776666678999999999988 46789999999999999998 999
Q ss_pred cCCCcccccccccccccc-eeeEEeEEEeEEc
Q 009245 208 LNESHQDFYAAKVSLGVL-GVISQVTLKLEPL 238 (539)
Q Consensus 208 ~~~~~~df~a~~gs~G~l-GiIt~vtl~l~p~ 238 (539)
+++++.+|.+..+.+-.- .||++++|++.|.
T Consensus 152 l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 152 LSAEELGFGYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred EEHHHhCcccccCcCCCCCEEEEEEEEEeCCC
Confidence 998777788887766544 8999999999997
No 31
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1.1e-16 Score=162.71 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=144.1
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEee-CC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLD-VQ 126 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id-~~ 126 (539)
+..+++| ++++.+..++.|+|++|+++++++|+++++|+.++|+|+|. ++.+ +.+|++|.+ +++++ .++ .+
T Consensus 9 L~~~tt~--riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNl---Lv~D-~~~g~vI~~-~~~~~-~~~~~~ 80 (334)
T PRK00046 9 LKPLNTF--GIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNV---LFTE-DFDGTVLLN-RIKGI-EVLSED 80 (334)
T ss_pred cccccee--ccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEE---EECC-CCCEEEEEe-cCCce-EEEecC
Confidence 3566778 88999999999999999999999999999999999888884 3333 456899987 48774 563 22
Q ss_pred C--CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccC-CCcccce
Q 009245 127 A--MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPG-NPEEEFV 203 (539)
Q Consensus 127 ~--~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~-G~~~~~~ 203 (539)
. .+|+|+||+.|.+|.+++.++||......+..+.||||++.+|++. +++.++|.|.++++++.+ |+
T Consensus 81 ~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~----- 150 (334)
T PRK00046 81 DDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQNIGA-----YGVELKDVCDYVEALDLATGE----- 150 (334)
T ss_pred CCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhcCCc-----CcccHheeEEEEEEEECCCCc-----
Confidence 2 3899999999999999999999997776666678999999999988 456899999999999987 98
Q ss_pred eEEEcCCCcccccccccccccc----eeeEEeEEEeEEcC
Q 009245 204 NVRVLNESHQDFYAAKVSLGVL----GVISQVTLKLEPLF 239 (539)
Q Consensus 204 ~v~~~~~~~~df~a~~gs~G~l----GiIt~vtl~l~p~~ 239 (539)
+++++.++.+|.+....+-.- -||++++|++.|..
T Consensus 151 -~~~~~~~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~~ 189 (334)
T PRK00046 151 -FVRLSAAECRFGYRDSIFKHEYPDRYAITAVGFRLPKQW 189 (334)
T ss_pred -EEEEEHHHcCcccccccCCCCCcCCEEEEEEEEEecCCC
Confidence 888888767788887655532 49999999999873
No 32
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.68 E-value=3.7e-16 Score=158.48 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=141.0
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEe---e
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKL---D 124 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~i---d 124 (539)
+..+++| ++++.+..++.|+|++||+++++++++++.|+.++|+|+| -++.+.+.+|++|.+.+|+++ ++ +
T Consensus 18 La~~tT~--rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSN---lL~~D~g~~G~VI~l~~~~~i-~i~~~~ 91 (354)
T PRK14648 18 LAERCSF--RIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSN---VLIADEGVPGLMLSLRRFRSL-HTQTQR 91 (354)
T ss_pred cccccee--eeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeE---EEEeCCCccEEEEEeCCcCce-EEeecc
Confidence 3556777 8899999999999999999999999999999999988888 345554567999999778874 44 2
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEc----------
Q 009245 125 VQAMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVT---------- 194 (539)
Q Consensus 125 ~~~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~---------- 194 (539)
.+...|+|+||+.|.+|.+++.++||.........+.||||++.+|++. +++.++|.|.++++++
T Consensus 92 ~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mNAGA-----yG~ei~d~l~~V~v~d~~~~~~~~~~ 166 (354)
T PRK14648 92 DGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMNARC-----YGRAIADCFHSARTLVLHPVRSRAKE 166 (354)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhcCCc-----cceEhhheEEEEEEEeccCccccccc
Confidence 2224799999999999999999999997666666678999999999988 4568999999999994
Q ss_pred ----------cCCCcccceeE-------------EEcCCCccccccccccccc---------ceeeEEeEEEeEEcC
Q 009245 195 ----------PGNPEEEFVNV-------------RVLNESHQDFYAAKVSLGV---------LGVISQVTLKLEPLF 239 (539)
Q Consensus 195 ----------~~G~~~~~~~v-------------~~~~~~~~df~a~~gs~G~---------lGiIt~vtl~l~p~~ 239 (539)
.+|+ + ++++.++.+|.+....+-. --||++++|++.|..
T Consensus 167 ~~~~~~~~~~~~g~------~~~~~~~~~~~~~~~~~~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 167 LPEVRKNAQDKRGE------CLGLDGGPFTCSSFQTVFARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccccccccCCCc------eecccccccccccceEecHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 4555 4 4555555568888765543 239999999998864
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.56 E-value=2.5e-14 Score=141.43 Aligned_cols=161 Identities=22% Similarity=0.196 Sum_probs=131.3
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCC-CCCceEeeCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKH-LNRVLKLDVQ 126 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~-l~~ii~id~~ 126 (539)
+..|++| ++++.+..++ |+|++|+++++ ++|+.++|+|+|. ++.+.+-++++|.+.+ ++. ++++
T Consensus 9 L~~~tt~--riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl---L~~D~g~~g~vI~l~~~~~~-~~~~-- 73 (273)
T PRK14651 9 LARYTTL--GVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL---LVSDAGVPERVIRLGGEFAE-WDLD-- 73 (273)
T ss_pred cccccEe--ecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE---EEcCCCcceEEEEECCccee-EeEC--
Confidence 3556777 8888898888 99999999988 4799999888883 4444445689998865 544 3332
Q ss_pred CCEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEE
Q 009245 127 AMTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVR 206 (539)
Q Consensus 127 ~~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~ 206 (539)
. +|+||+.|.+|.+++.++||.........+.||||++.+|++. +++.++|.|.++++++ +|+ ++
T Consensus 74 ~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~------~~ 138 (273)
T PRK14651 74 G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMNAGT-----RFGEMADALHTVEIVH-DGG------FH 138 (273)
T ss_pred C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhhCCc-----cccChheeEEEEEEEE-CCC------EE
Confidence 2 6999999999999999999987776666678999999999988 4568999999999997 888 89
Q ss_pred EcCCCcccccccccccccceeeEEeEEEeEEc
Q 009245 207 VLNESHQDFYAAKVSLGVLGVISQVTLKLEPL 238 (539)
Q Consensus 207 ~~~~~~~df~a~~gs~G~lGiIt~vtl~l~p~ 238 (539)
+++.++.+|.+....+-.--||++++|++.|.
T Consensus 139 ~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 139 QYSPDELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEEHHHccccccccCCCCCEEEEEEEEEECCC
Confidence 88887677888877665435999999999886
No 34
>PF09129 Chol_subst-bind: Cholesterol oxidase, substrate-binding; InterPro: IPR015213 The substrate-binding domain found in cholesterol oxidase is composed of an eight-stranded mixed beta-pleated sheet and six alpha-helices. This domain is positioned over the isoalloxazine ring system of the FAD cofactor bound by the FAD-binding domain (IPR006094 from INTERPRO) and forms the roof of the active site cavity, allowing for catalysis of oxidation and isomerisation of cholesterol to cholest-4-en-3-one []. ; PDB: 3JS8_A 1I19_B 2I0K_A.
Probab=99.36 E-value=1.7e-11 Score=117.67 Aligned_cols=244 Identities=17% Similarity=0.200 Sum_probs=119.6
Q ss_pred HHHHhcccccceeEEEecCCCceeeeeccccCCCCCCCC----cccccCccchhHHHHHHhhhcHHHHhhccccCccccc
Q 009245 256 QAAIFGHRHEFADITWYPSQRKAAYRVDDRISSNTSGNG----LYNFFPFRPMLSVAMAVVRATEENQESLRDADGKCIG 331 (539)
Q Consensus 256 ~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 331 (539)
.++.++.+...+|..|||++++-..+.+...|..+..+. ..+|...++.+. .....+.... .+....
T Consensus 25 T~~sfld~sGR~EaIWfPFT~~PWLKVWs~sP~kP~~SR~V~~PyNYpFSD~ip~---~vtDLi~~i~------~g~~~l 95 (321)
T PF09129_consen 25 TFASFLDRSGRVEAIWFPFTDNPWLKVWSVSPTKPLLSREVTGPYNYPFSDNIPE---PVTDLIGQIV------AGNPGL 95 (321)
T ss_dssp -HHHHHHHCSEEEEEE-TT-SS-EEEEEEE-SS--TTSEE-SSS---HHHHS--H---HHHHHHHHHH------TT-GGG
T ss_pred cHHHHHhhcCcEEEEEecCCCCcceeeeccCCCCCCcccccCCCCCCCccccccH---HHHHHHHHHH------cCCccc
Confidence 455667777789999999999999988877665433221 112222222211 1111111111 111111
Q ss_pred cchhhhhh-hhhhcccccCCeeeeccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEe--chhHHH
Q 009245 332 GKLVTSTL-NAFAFGLTNDGVVFAGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVA--LSVVKN 408 (539)
Q Consensus 332 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP--~~~~~~ 408 (539)
.+....+. .....|+..+ ......||+..++.. ... ...++...-|+|= .++++.
T Consensus 96 tP~~Gq~q~~~~~aGL~~t----~s~DiWGwSkd~l~Y-----irp-------------TTLRVTAnGyAVlTrRaniQr 153 (321)
T PF09129_consen 96 TPLFGQTQYAITGAGLAAT----DSSDIWGWSKDVLLY-----IRP-------------TTLRVTANGYAVLTRRANIQR 153 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHT----T-SEEEEEHHHHH---------T-------------TS---EEEEEEEEE-GGGHHH
T ss_pred cchhhHHHHHHHHHHHhcc----cccccccccccceeE-----ecc-------------ceEEEecCCEEEEecHHHHHH
Confidence 11111110 1111122111 112467888776521 111 1235677888986 456777
Q ss_pred HHHHHHHHHHh---CccccccceeeeeEEEEEecCCCC-----------CCCC--CC------C-eEEEEEEEeccCCCC
Q 009245 409 FIQDIQKLVQM---EPKALCGLELYNGIIMRYVKASNA-----------YLGK--QE------D-SLDFDIMYYRSKDPM 465 (539)
Q Consensus 409 ~l~~v~~~~~~---~~~~~~~~~~~~pi~~Rfv~~d~~-----------~Ls~--~~------d-~~~i~i~~~~~~~~~ 465 (539)
+|.++.++.+. .......+++..|+|||.++=|+. -||. +| | ++|++|.... +
T Consensus 154 Vi~eF~~~y~~r~~~Y~~~G~yP~NgPvEIRvtGLD~p~dv~v~~a~~P~LSAlrPrpDhpeWDvAiWldvLtlP----G 229 (321)
T PF09129_consen 154 VINEFVAFYQERLAAYQAQGQYPMNGPVEIRVTGLDQPADVGVPGAVPPTLSALRPRPDHPEWDVAIWLDVLTLP----G 229 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----S-EEEEEEE---GGGSSSTTS-S-TT-TT---TT-TT--EEEEEEEEE-T----T
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCceEEEEecCCChhhcCCCCCCCccccccCCCCCCCCcceEEEEeeccCC----C
Confidence 77776655542 111112357889999999866532 2442 11 2 6899998874 5
Q ss_pred CccccHHHHHHHHHHHHhhcCC-----ccccccCCCccch-----------hHHHhC----C---CHHHHHHHHHhcCCC
Q 009245 466 APRLYEDVLEEIEQLAVFKYGG-----LPHWGKNRNLVFD-----------GVIKKY----K---NAGEFLKVKQKFDPL 522 (539)
Q Consensus 466 ~~~~~~~~~~~ie~~~~~~~gG-----RPHWgK~~~~~~~-----------~l~~~Y----P---~~~~F~~~r~~~DP~ 522 (539)
+|. ..+|++|+|++++.+|.| ||-|.|-+.++.+ .+...| | +|+.=.+...++||+
T Consensus 230 TP~-a~~Fyre~EqWm~~~y~g~yAt~RpEWSKGWayt~~~aw~d~~~l~~~iP~~~~~G~p~~~~Wd~A~atL~~~DPh 308 (321)
T PF09129_consen 230 TPG-ANAFYREMEQWMFSNYSGSYATVRPEWSKGWAYTDDAAWTDETVLTTTIPNSYRAGQPADDNWDTARATLNRYDPH 308 (321)
T ss_dssp -TT-HHHHHHHHHHHHHHHSBTTTEEEEE-TTSB-S-SSS-TT--HHHHHTHHHHHTTTTS-CCCSHHHHHHHHHHH-TT
T ss_pred Ccc-HHHHHHHHHHHHHhhcCCccceEeeeeccccccCCCccccChhHHhhhchHHHhcCCCCCCCHHHHHHHHhccCcc
Confidence 553 458999999998888988 9999999887643 133345 3 699999999999999
Q ss_pred CCCcchhhhhhcC
Q 009245 523 GLFSSEWTDQMLG 535 (539)
Q Consensus 523 g~F~n~~~~~llg 535 (539)
++|+|+++++||+
T Consensus 309 riFss~llD~Llp 321 (321)
T PF09129_consen 309 RIFSSPLLDRLLP 321 (321)
T ss_dssp --S--HHHHHH--
T ss_pred chhccHHHHhhcC
Confidence 9999999999985
No 35
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.32 E-value=5.7e-12 Score=123.47 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=121.1
Q ss_pred ccccCCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCC
Q 009245 48 TNSYGMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQA 127 (539)
Q Consensus 48 ~~~~~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~ 127 (539)
+..++.| ++++.++.++.|++.+ + ++|+.++|+|+|. ++.+.+. +.+|-+.+++. ++++.
T Consensus 7 L~~~tt~--~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl---Lv~D~g~-~~vv~~~~~~~-~~~~~-- 66 (257)
T PRK13904 7 FSKYSSV--KIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL---LISPNPK-NLAILGKNFDY-IKIDG-- 66 (257)
T ss_pred hhhcCce--eECceEEEEEEechhh-h----------CCCeEEEeceeEE---EEecCCc-cEEEEccCcCe-EEEeC--
Confidence 3567778 8899999999999888 6 7899999888883 4444333 34444456766 46644
Q ss_pred CEEEEcCCCCHHHHHHHHHHcCCccCCcccccccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCCcccceeEEE
Q 009245 128 MTVTVESGVTLRQVIEESAKAGLALPYGPYWWGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRV 207 (539)
Q Consensus 128 ~~vtv~aGv~l~~l~~~l~~~Gl~l~~~~~~~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~ 207 (539)
.+|+|+||+.|.+|.+++.++||.........+.||||++.+|++. +++.++|.|.++++++ |+
T Consensus 67 ~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~--------- 130 (257)
T PRK13904 67 ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMNAGL-----KEYEISNNLESICTNG--GW--------- 130 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhcCCc-----CccchheeEEEEEEEe--eE---------
Confidence 5799999999999999999999997776666678999999999887 3568999999999997 43
Q ss_pred cCCCcccccccccccccceeeEEeEEEeEEcCc
Q 009245 208 LNESHQDFYAAKVSLGVLGVISQVTLKLEPLFK 240 (539)
Q Consensus 208 ~~~~~~df~a~~gs~G~lGiIt~vtl~l~p~~~ 240 (539)
++.++.+|.+....+. .||++++|++.|..+
T Consensus 131 ~~~~e~~f~YR~S~~~--~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 131 IEKEDIGFGYRSSGIN--GVILEARFKKTHGFD 161 (257)
T ss_pred EeHHHCcccccCcCCC--cEEEEEEEEECCCCH
Confidence 3444455887776665 499999999988653
No 36
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.04 E-value=0.00041 Score=64.64 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=71.4
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQV 141 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l 141 (539)
+..++.|+|.+|+.++++ . +-..++++||.......-........+||++++...-.|+.+++.++++|++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~--~--~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA--K--GPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH--H--GTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh--c--CCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 456899999999999998 2 235778844432110000000123689999988655556666789999999999999
Q ss_pred HHH---------HHHcCCccCCcccc-cccceeeeeccCCCCCCCcCCCCccccceeEEEEEccCCC
Q 009245 142 IEE---------SAKAGLALPYGPYW-WGLTVGGMLGTGAHGSSLWGRGSSVHDYAVEIRIVTPGNP 198 (539)
Q Consensus 142 ~~~---------l~~~Gl~l~~~~~~-~~~tvgG~i~tg~hG~~~~~~~g~~~d~V~~~~vV~~~G~ 198 (539)
.+. |.++-..+.. +.+ +..|+||.++++...+-.. ..+.-.=-.+++..++|+
T Consensus 78 ~~~~~~~~~~p~L~~~~~~ias-~~IRn~aTiGGNl~~~~~~sD~~---~~Llal~A~v~i~~~~g~ 140 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAARRIAS-PQIRNRATIGGNLCNASPASDLA---PALLALDARVEIASPDGT 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTBTT-SHH---HHHHHTT-EEEEEETTEE
T ss_pred hhcchhhhhHHHHHHHHHHhCC-HhHeeeeeeccccccCcccccHH---HHHHHhCcEEEEEcCCee
Confidence 886 1111111211 122 3469999998765543221 111111134556666664
No 37
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.72 E-value=0.0028 Score=63.13 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=78.2
Q ss_pred eccccccccccccccccccccccccccccccCCCcccCcceeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeeeE
Q 009245 354 AGYPVIGYQNRLQSSGTCLDSAEDSMITGCGWDPRINGEFFHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNGI 433 (539)
Q Consensus 354 ~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~pi 433 (539)
++.+.+.+.+++... +..+.....|+..+ .+ ...+||-+++.+|.+.+.+-+-+... ...||
T Consensus 113 ~DvsY~dFL~Rv~~~-------E~~Lr~~G~WdvPH---PW--lnlfvP~s~i~dF~~~V~~~il~~~~------~~Gpi 174 (281)
T PF09265_consen 113 EDVSYVDFLDRVHSS-------EEKLRSKGLWDVPH---PW--LNLFVPKSRIEDFDRGVFKGILKDDG------NSGPI 174 (281)
T ss_dssp EEEEHHHHHTCCHHH-------HHHHHHCTTSSS---------EEEEEEHHHHHHHHHHCCCCCTTTS-------S-SEE
T ss_pred ccccHHHHHHHhhhH-------HHHHHhcCCccccC---cc--eeeecchHHHHHHHHHHHHHhhccCC------CCceE
Confidence 344555555665322 12223356777432 23 68999999999999888654422111 12466
Q ss_pred EEEEecCCC--CCCC---CCCCeEE-EEEEEec-cCCCCCccccHHHH---HHHHHHHH--hhcCCccccccCCCccchh
Q 009245 434 IMRYVKASN--AYLG---KQEDSLD-FDIMYYR-SKDPMAPRLYEDVL---EEIEQLAV--FKYGGLPHWGKNRNLVFDG 501 (539)
Q Consensus 434 ~~Rfv~~d~--~~Ls---~~~d~~~-i~i~~~~-~~~~~~~~~~~~~~---~~ie~~~~--~~~gGRPHWgK~~~~~~~~ 501 (539)
.+--+..+. .-+| |.++.+| +++.... |.. .+...+.+. ++|=+. + ..+||+.+..-. .+.++
T Consensus 175 LvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~--~~~~l~~l~~qN~~il~~-c~~agi~~k~Yl~~~--~t~~d 249 (281)
T PF09265_consen 175 LVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSD--GPDDLERLLEQNRRILEF-CRKAGIGGKQYLPHY--TTQED 249 (281)
T ss_dssp EEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTS--SCCHHHHHHHHHHHHHHH-HHHTT--EEESS-----SSHHH
T ss_pred EEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCC--CchhHHHHHHHHHHHHHH-HHHcCCceEECCCCC--CCHHH
Confidence 666555542 3334 3456665 5555543 221 121222222 222222 2 234555443322 78899
Q ss_pred HHHhC-CCHHHHHHHHHhcCCCCCCcc
Q 009245 502 VIKKY-KNAGEFLKVKQKFDPLGLFSS 527 (539)
Q Consensus 502 l~~~Y-P~~~~F~~~r~~~DP~g~F~n 527 (539)
.++.| ++|++|.+.|++|||.+++..
T Consensus 250 W~~HFG~~W~~f~~~K~~yDP~~IL~P 276 (281)
T PF09265_consen 250 WRRHFGPKWERFVERKRRYDPKAILAP 276 (281)
T ss_dssp HHHHHGHHHHHHHHHHHHH-TT--B-G
T ss_pred HHHHhchHHHHHHHHHHhCCchhhcCC
Confidence 99999 899999999999999999864
No 38
>PRK09799 putative oxidoreductase; Provisional
Probab=96.47 E-value=0.0071 Score=60.22 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=63.8
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHH
Q 009245 64 NVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIE 143 (539)
Q Consensus 64 ~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~ 143 (539)
.++.|+|.+|+.++++. ++-..+++ +||....... ......++||++++ ..-.+..+++.++++|++++.++.+
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~il-AGGT~L~~~~-~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~ 77 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWF-AGGSKLNATP-TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRD 77 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEE-ecCCChHhhh-CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHh
Confidence 57899999999998874 32235677 4555432111 11234689999986 5555666778999999999999987
Q ss_pred HHHHc-CC--ccCC--cccc-cccceeeeeccC
Q 009245 144 ESAKA-GL--ALPY--GPYW-WGLTVGGMLGTG 170 (539)
Q Consensus 144 ~l~~~-Gl--~l~~--~~~~-~~~tvgG~i~tg 170 (539)
...-. .| +... .+.+ +..||||.++++
T Consensus 78 ~~~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a 110 (258)
T PRK09799 78 ARFIPAALREALGFVYSRHLRNQSTIGGEIAAR 110 (258)
T ss_pred CcccHHHHHHHHHHhCCHHHhccchhHHHhhcC
Confidence 53111 11 0001 1112 346999999864
No 39
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.08 E-value=0.014 Score=57.96 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=63.1
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHH
Q 009245 64 NVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIE 143 (539)
Q Consensus 64 ~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~ 143 (539)
.++.|+|.+|+.++++. ++-.-+++ .||++...... .....++||++++ ..-.|+.+++.++++|++++.++.+
T Consensus 3 ~y~~P~sl~Ea~~ll~~---~~~~a~~l-AGGTdL~~~~~-~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 3 QFFRPESTIQALELKKR---HTGVAVWF-AGGSKLNATPT-RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred ceECCCCHHHHHHHHHh---CCCCCEEE-ecCcchhhhhc-ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 47899999999998774 22234567 46665422111 1223588999887 5555666678999999999999876
Q ss_pred HH------HHcCCccCCcccc-cccceeeeeccCC
Q 009245 144 ES------AKAGLALPYGPYW-WGLTVGGMLGTGA 171 (539)
Q Consensus 144 ~l------~~~Gl~l~~~~~~-~~~tvgG~i~tg~ 171 (539)
.. .+.=..+ ..+.+ +..|+||.++++.
T Consensus 77 ~~~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 77 NELTPAALKEALGFV-YSRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred CcchHHHHHHHHHHh-CCHHHhccccHHHHhhcCC
Confidence 32 1110011 11222 3469999998643
No 40
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=95.51 E-value=0.025 Score=55.14 Aligned_cols=113 Identities=21% Similarity=0.387 Sum_probs=67.1
Q ss_pred eeeeEEEEechhHHHHHHHHHHHHHhCccccccceeeeeEEEEEecCCCCCCCCCCCeEEEEEEEeccCCCCCccccHHH
Q 009245 394 FHQTTFSVALSVVKNFIQDIQKLVQMEPKALCGLELYNGIIMRYVKASNAYLGKQEDSLDFDIMYYRSKDPMAPRLYEDV 473 (539)
Q Consensus 394 ~~~~E~~iP~~~~~~~l~~v~~~~~~~~~~~~~~~~~~pi~~Rfv~~d~~~Ls~~~d~~~i~i~~~~~~~~~~~~~~~~~ 473 (539)
....|.+||.+++.++++++++++++.... ...|.... ...+.+.+.+-. .++..+...+.+
T Consensus 128 ~~~~dv~vp~~~l~~~~~~~~~~~~~~~~~----------~~~~gH~~-------~g~~h~~~~~~~-~~~~~~~~~~~~ 189 (248)
T PF02913_consen 128 WDTEDVAVPPSRLPEFLREIRALLREYGLE----------VCHFGHAG-------DGNLHLYILFDP-RDPEEPERAEAL 189 (248)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHCTEE----------EEEEEEEE-------ECEEEEEEEEET-TSHHHHHHHHHH
T ss_pred eeeeeecccchhhhhHHHhhhhhhhhcccc----------ccceEEcc-------CCeEEEEeeccc-chHHHHHHHHHH
Confidence 456899999999999999999999975521 11111111 123344443322 122223345567
Q ss_pred HHHHHHHHHhhcCCccccccCCCcc---chhHHHhCC--CHHHHHHHHHhcCCCCCCcc
Q 009245 474 LEEIEQLAVFKYGGLPHWGKNRNLV---FDGVIKKYK--NAGEFLKVKQKFDPLGLFSS 527 (539)
Q Consensus 474 ~~~ie~~~~~~~gGRPHWgK~~~~~---~~~l~~~YP--~~~~F~~~r~~~DP~g~F~n 527 (539)
++++-+. +.++||-+. -.|... .+.+...++ .+.-+.++|+.+||+|++..
T Consensus 190 ~~~~~~~-~~~~gG~is--~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 190 WDELYEL-VLELGGSIS--AEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HHHHHHH-HHHTT-BBS--SSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BST
T ss_pred HHHHHHH-HHhcccccc--cccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCC
Confidence 7777776 789999654 112221 123344553 48999999999999999863
No 41
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=95.45 E-value=0.034 Score=60.14 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=67.5
Q ss_pred CccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCC-CCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHH
Q 009245 61 KAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSI-PKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLR 139 (539)
Q Consensus 61 ~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~-~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~ 139 (539)
....+++|+|.+|+.++++.. . ..++++ ||.+. ............+||++++...-.|..+++.++++|++++.
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~~---~-~a~lvA-GGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~ 265 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAAH---P-DARIVA-GSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLT 265 (467)
T ss_pred CCceEECCCCHHHHHHHHhhC---C-CCEEEe-cCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHH
Confidence 356799999999999998753 1 346673 44432 11111112236899999876544555666789999999999
Q ss_pred HHHHHHHHc--CC--ccCCccc--c-cccceeeeeccCC
Q 009245 140 QVIEESAKA--GL--ALPYGPY--W-WGLTVGGMLGTGA 171 (539)
Q Consensus 140 ~l~~~l~~~--Gl--~l~~~~~--~-~~~tvgG~i~tg~ 171 (539)
|+.+.+.++ .+ ++...++ + +..||||.|+++.
T Consensus 266 el~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 266 DAYAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGS 304 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCC
Confidence 998766543 11 1111111 2 3469999998643
No 42
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=95.27 E-value=0.023 Score=57.60 Aligned_cols=103 Identities=20% Similarity=0.209 Sum_probs=62.6
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCC-CCCcccCCCCcEEEEcCCCCCceEee-CCCCEEEEcCCCCHHHH
Q 009245 64 NVAYPASEQELISIVAAAAMTKTRIKVATRFSHSI-PKLVCPAGQEGLLISTKHLNRVLKLD-VQAMTVTVESGVTLRQV 141 (539)
Q Consensus 64 ~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~-~~~~~~~~~~gv~I~l~~l~~ii~id-~~~~~vtv~aGv~l~~l 141 (539)
.++.|+|.+|+.++++.- . ..++++ ||.+. ..+.........+||++++...-.|. .+++.++++|++++.++
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a~iva-GGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QAKLIA-GGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CCEEEe-ccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 689999999999998752 2 346774 44432 11111112236899999876544555 34467999999999999
Q ss_pred HH--HHHHcC----CccC--Ccccc-cccceeeeeccCC
Q 009245 142 IE--ESAKAG----LALP--YGPYW-WGLTVGGMLGTGA 171 (539)
Q Consensus 142 ~~--~l~~~G----l~l~--~~~~~-~~~tvgG~i~tg~ 171 (539)
.+ .+.++- .+.. ..+.+ +..|+||.|+++.
T Consensus 81 ~~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 81 IEDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred hcChHHHHHhHHHHHHHHHhCCHHHhcceecccccccCC
Confidence 86 222211 0111 11112 3469999998644
No 43
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=95.27 E-value=0.011 Score=42.49 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=20.8
Q ss_pred hHHHhC--CCHHHHHHHHHhcCCCCCCcchh
Q 009245 501 GVIKKY--KNAGEFLKVKQKFDPLGLFSSEW 529 (539)
Q Consensus 501 ~l~~~Y--P~~~~F~~~r~~~DP~g~F~n~~ 529 (539)
+..+.| .++++..++|+++||+++|.++.
T Consensus 14 ~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q 44 (47)
T PF08031_consen 14 DWQEAYYGENYDRLRAIKRKYDPDNVFRFPQ 44 (47)
T ss_dssp HHHHHHHGGGHHHHHHHHHHH-TT-TS-STT
T ss_pred HHHHHHhchhHHHHHHHHHHhCccceeCCCC
Confidence 344444 78999999999999999998763
No 44
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=95.02 E-value=0.028 Score=57.55 Aligned_cols=104 Identities=24% Similarity=0.299 Sum_probs=62.9
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHH
Q 009245 64 NVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIE 143 (539)
Q Consensus 64 ~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~ 143 (539)
.++.|+|.+|..++++.. + .-++++||..-...+.........+||+.++...-.|+.+.+.++++|+|++.|+.+
T Consensus 6 ~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 589999999999988753 2 235674443211111111122368999998754444555667899999999999965
Q ss_pred H--HHH-------cCCccCCcccc-cccceeeeeccCCC
Q 009245 144 E--SAK-------AGLALPYGPYW-WGLTVGGMLGTGAH 172 (539)
Q Consensus 144 ~--l~~-------~Gl~l~~~~~~-~~~tvgG~i~tg~h 172 (539)
. +.+ .=..+ ..+.+ +..||||.+++.+.
T Consensus 82 ~~~i~~~~p~L~~a~~~i-as~qIRN~aTiGGNi~~~~~ 119 (321)
T TIGR03195 82 DALVRTRWPALAQAARAV-AGPTHRAAATLGGNLCLDTR 119 (321)
T ss_pred ChhhHhHhHHHHHHHHHh-CCHHHhCceecHHhhhccCC
Confidence 3 111 10001 11112 34699999997543
No 45
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=94.09 E-value=0.044 Score=54.80 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccC--CCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHH-
Q 009245 68 PASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPA--GQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEE- 144 (539)
Q Consensus 68 P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~--~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~- 144 (539)
|+|.+|+.++++.. . ..++++ ||.+........ .....+||++++...-.|+.+++.++++|++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~iva-GgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVS-GSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEE-ccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 88999999999863 1 346774 444321111111 113789999998766667777789999999999999742
Q ss_pred -HHHc--CC--ccC--Ccccc-cccceeeeeccC
Q 009245 145 -SAKA--GL--ALP--YGPYW-WGLTVGGMLGTG 170 (539)
Q Consensus 145 -l~~~--Gl--~l~--~~~~~-~~~tvgG~i~tg 170 (539)
+.++ .+ ++. ..+.+ +..|+||.++++
T Consensus 76 ~i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 76 LIKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred HhHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1110 00 111 11112 346999999876
No 46
>PLN02906 xanthine dehydrogenase
Probab=91.58 E-value=0.27 Score=59.94 Aligned_cols=105 Identities=19% Similarity=0.174 Sum_probs=66.8
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCC-CCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIP-KLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQ 140 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~-~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~ 140 (539)
...++.|+|.+|+.++++.. . .-+++. ||.+.. .+-.......++||++++..+-.|+.+.+.++++|++++.+
T Consensus 228 ~~~~~~P~tl~ea~~ll~~~---~-~a~ivA-GGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~e 302 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAEY---P-DAKLVV-GNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSE 302 (1319)
T ss_pred CceEECcCCHHHHHHHHHhC---C-CCEEEE-cCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHH
Confidence 34689999999999987753 1 245663 444321 11111122378999998766555666677899999999999
Q ss_pred HHHHHHHcCC--------ccC---------Ccccc-cccceeeeeccCC
Q 009245 141 VIEESAKAGL--------ALP---------YGPYW-WGLTVGGMLGTGA 171 (539)
Q Consensus 141 l~~~l~~~Gl--------~l~---------~~~~~-~~~tvgG~i~tg~ 171 (539)
|.+.|.+.=. .++ ..+.+ +..||||.|+++.
T Consensus 303 l~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 303 LQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCC
Confidence 9987554310 011 11112 3469999998654
No 47
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=91.39 E-value=0.4 Score=58.43 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=67.3
Q ss_pred cEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCC-CCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHH
Q 009245 63 ANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIP-KLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQV 141 (539)
Q Consensus 63 ~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~-~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l 141 (539)
..++.|+|.+|+.++++.. . .-+++. ||.+.. .+-........+||+++...+-.+..+++.++++|++++.++
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvA-GGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el 311 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVM-GNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQV 311 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEe-cCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHH
Confidence 4689999999999998753 2 345663 444321 111111122589999987665556666789999999999999
Q ss_pred HHHHHHc----C----CccCC-------cc--cc-cccceeeeeccCCCC
Q 009245 142 IEESAKA----G----LALPY-------GP--YW-WGLTVGGMLGTGAHG 173 (539)
Q Consensus 142 ~~~l~~~----G----l~l~~-------~~--~~-~~~tvgG~i~tg~hG 173 (539)
.+.|.+. . -.++. .+ .+ +..||||.|+++..-
T Consensus 312 ~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~ 361 (1330)
T TIGR02969 312 KDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD 361 (1330)
T ss_pred HHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc
Confidence 9875533 0 00111 11 12 246999999876643
No 48
>PLN00192 aldehyde oxidase
Probab=90.46 E-value=0.54 Score=57.46 Aligned_cols=108 Identities=14% Similarity=0.117 Sum_probs=68.7
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQV 141 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l 141 (539)
...++.|+|.+|+.++++.....+-.-+++. ||.+.... .....-.++||++++..+-.|..+++.++++|++++.++
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvA-GgTdl~~~-k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el 310 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVV-GNTGTGYY-KDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKA 310 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEE-eCCcceee-eccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHH
Confidence 4579999999999999875310112345663 44433211 111223789999987665556666789999999999999
Q ss_pred HHHHHHcCC---ccCC-------cc--cc-cccceeeeeccCC
Q 009245 142 IEESAKAGL---ALPY-------GP--YW-WGLTVGGMLGTGA 171 (539)
Q Consensus 142 ~~~l~~~Gl---~l~~-------~~--~~-~~~tvgG~i~tg~ 171 (539)
.+.+.+.-. .++. .. .+ +..||||.|+++.
T Consensus 311 ~~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 311 IEALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcccC
Confidence 987765421 1111 11 11 2469999999764
No 49
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=89.83 E-value=0.71 Score=47.38 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=66.2
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccC--CCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPA--GQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLR 139 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~--~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~ 139 (539)
...++.|.+.+|+..++..- -+.+++.|+.- + ++-.+. ..-..+|-...+...-.|+...+.++++||+++.
T Consensus 203 ~~r~~~P~~l~D~a~l~aa~----P~AtivAGsTD-v-gLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t 276 (493)
T COG4630 203 DDRFIVPATLADFADLLAAH----PGATIVAGSTD-V-GLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYT 276 (493)
T ss_pred CceeEeeccHHHHHHHHhhC----CCCEEEecCcc-h-hhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHH
Confidence 56799999999999988652 24567744332 2 222221 0113455555665555677778999999999999
Q ss_pred HHHHHHHHcCCccCC----ccc---ccccceeeeeccCC
Q 009245 140 QVIEESAKAGLALPY----GPY---WWGLTVGGMLGTGA 171 (539)
Q Consensus 140 ~l~~~l~~~Gl~l~~----~~~---~~~~tvgG~i~tg~ 171 (539)
|....|.++=-.+.. .++ -+-.|+||.|++++
T Consensus 277 ~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS 315 (493)
T COG4630 277 QAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS 315 (493)
T ss_pred HHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC
Confidence 999999765211111 111 12359999998765
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=87.27 E-value=1.4 Score=44.41 Aligned_cols=108 Identities=19% Similarity=0.196 Sum_probs=65.4
Q ss_pred ccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCccc-CCCCcEEEEcCCCCCceE-eeCCCCEEEEcCCCCHH
Q 009245 62 AANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCP-AGQEGLLISTKHLNRVLK-LDVQAMTVTVESGVTLR 139 (539)
Q Consensus 62 p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~-~~~~gv~I~l~~l~~ii~-id~~~~~vtv~aGv~l~ 139 (539)
+-.+++|.|.+|...+++... ..+++ .||+++..+.-. ......+||+.++..... +..+.+.++++|-+++.
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~----~a~~l-aGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAP----DAKYL-AGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCC----CcEEe-eCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 456899999999998888443 34677 566654322211 122367899988742222 33456679999999999
Q ss_pred HHHHHHHHcCC--------ccCCcccc-cccceeeeeccCCCCC
Q 009245 140 QVIEESAKAGL--------ALPYGPYW-WGLTVGGMLGTGAHGS 174 (539)
Q Consensus 140 ~l~~~l~~~Gl--------~l~~~~~~-~~~tvgG~i~tg~hG~ 174 (539)
|+.+.-.-+.. .....+.+ +..||||.++.+.|-.
T Consensus 78 ei~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~a 121 (284)
T COG1319 78 EIARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNADPAA 121 (284)
T ss_pred HHHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCCCch
Confidence 99743311111 11122222 2369999988766653
No 51
>PF03614 Flag1_repress: Repressor of phase-1 flagellin; InterPro: IPR003223 Flagellin is the subunit which polymerises to form the filaments of bacterial flagella. The proteins in this family are transcriptional repressors of phase-1 flagellin genes.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent
Probab=60.03 E-value=18 Score=32.45 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=33.1
Q ss_pred EEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCc
Q 009245 64 NVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLV 102 (539)
Q Consensus 64 ~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~ 102 (539)
+-+.|+..+-+...+++++.+++||+++..-|+++.+..
T Consensus 8 AEvwprdys~ler~l~f~r~~~~pVrvv~~ng~~f~myV 46 (165)
T PF03614_consen 8 AEVWPRDYSMLERRLQFWRFNDIPVRVVSENGQVFCMYV 46 (165)
T ss_pred cccCcchHHHHHHHHHHHHhcCCceEEEecCCcEEEEEE
Confidence 446799999999999999999999999988888765443
No 52
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=56.66 E-value=6.1 Score=32.94 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=20.8
Q ss_pred hHHHhCCCHHHHHHHHHhcCCCCCCcchh
Q 009245 501 GVIKKYKNAGEFLKVKQKFDPLGLFSSEW 529 (539)
Q Consensus 501 ~l~~~YP~~~~F~~~r~~~DP~g~F~n~~ 529 (539)
.+.+.|| +.|.++++++||+|.+...|
T Consensus 69 ~l~~~~P--~~w~~l~~KyDp~~~y~~ky 95 (95)
T PF03392_consen 69 FLKKNYP--DEWEELVKKYDPEGKYRKKY 95 (95)
T ss_dssp HHHHHHH--HHHHHHHHHHTTT-TTHHHH
T ss_pred HHHHcCH--HHHHHHHHHHCCCcchhhcC
Confidence 4667778 79999999999999876543
No 53
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=43.44 E-value=69 Score=27.17 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHHHHHHH
Q 009245 68 PASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVIEESAK 147 (539)
Q Consensus 68 P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~~~l~~ 147 (539)
-++..||..+++...+++.++++...+|+ . .+ ..++++|++++++....|..-.+-...+..
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~~g~------------~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a 65 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHPRGQ------------S-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNA 65 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT-SS------------E-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCC------------E-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcC
Confidence 46789999999999999999988733333 1 22 256889999999999988776666555544
Q ss_pred cCC
Q 009245 148 AGL 150 (539)
Q Consensus 148 ~Gl 150 (539)
.-+
T Consensus 66 ~~~ 68 (108)
T PF07317_consen 66 EEL 68 (108)
T ss_dssp --E
T ss_pred CcE
Confidence 433
No 54
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.34 E-value=31 Score=36.99 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=28.7
Q ss_pred eeeeeccCC-CCCCCcCCCCccccceeEEEEEccCCCcccceeEEEcCC
Q 009245 163 VGGMLGTGA-HGSSLWGRGSSVHDYAVEIRIVTPGNPEEEFVNVRVLNE 210 (539)
Q Consensus 163 vgG~i~tg~-hG~~~~~~~g~~~d~V~~~~vV~~~G~~~~~~~v~~~~~ 210 (539)
|.|++..|+ .|-. .-.+++-+|.++++|.-||+ |+++.+
T Consensus 288 V~GaivSGtAsGDw---TLSCVRGqV~SiTFVF~DGt------irTvp~ 327 (472)
T TIGR03752 288 VAGAVVSGTASGDW---TLSCVRGQVRSLTFVFNDGT------IRTVPR 327 (472)
T ss_pred ccceEEeeeeccce---EEEEEeeeEEEEEEEEeCCe------EEEecC
Confidence 567766544 3321 23588999999999999998 998865
No 55
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=34.72 E-value=56 Score=35.70 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=52.9
Q ss_pred cCccEEEeCCCHHHHHHHHHHHHHcC-CCeEEE-----eCCCCCCCCCcccCCCCcEEEEc-CCCCCceEeeCCCCEEEE
Q 009245 60 CKAANVAYPASEQELISIVAAAAMTK-TRIKVA-----TRFSHSIPKLVCPAGQEGLLIST-KHLNRVLKLDVQAMTVTV 132 (539)
Q Consensus 60 ~~p~~v~~P~s~~ev~~~v~~a~~~~-~~v~v~-----~ggghs~~~~~~~~~~~gv~I~l-~~l~~ii~id~~~~~vtv 132 (539)
+-|-..+.|.|+++|.++++.|+++- .||.+- +||.|||..+- ..+|-+ +++.+ .++=++.|
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld------~llL~tYs~lR~-----~~NIvl~v 218 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLD------DLLLATYSELRS-----RDNIVLCV 218 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcc------cHHHHHHHHHhc-----CCCEEEEe
Confidence 45667899999999999999999974 344332 23556775542 223222 23322 23346778
Q ss_pred cCCCCHH-HHHHHH---HHcCCccCCccccccccee
Q 009245 133 ESGVTLR-QVIEES---AKAGLALPYGPYWWGLTVG 164 (539)
Q Consensus 133 ~aGv~l~-~l~~~l---~~~Gl~l~~~~~~~~~tvg 164 (539)
++|+--. +-..+| +...+.+|.+|- +++-+|
T Consensus 219 GgGiGtp~~aa~YLTGeWSt~~g~P~MP~-DGiLvG 253 (717)
T COG4981 219 GGGIGTPDDAAPYLTGEWSTAYGFPPMPF-DGILVG 253 (717)
T ss_pred cCCcCChhhcccccccchhhhcCCCCCCc-ceeEec
Confidence 8887553 344444 233344555553 334443
No 56
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=32.33 E-value=80 Score=27.16 Aligned_cols=44 Identities=14% Similarity=0.034 Sum_probs=35.9
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCC
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHS 97 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs 97 (539)
..| ...+.+..++...|++|+.++.+.|++.|++..++--.|++
T Consensus 40 ~~W--~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 40 EEW--LNEGQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred HHH--HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 457 44577899999999999999999999999987777455653
No 57
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=32.00 E-value=59 Score=26.98 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=35.1
Q ss_pred cccHHHHHHHHHHHHhhcCCccc--cccCCC------------c---cchhHHHhC--CCHHHHHHHHHh
Q 009245 468 RLYEDVLEEIEQLAVFKYGGLPH--WGKNRN------------L---VFDGVIKKY--KNAGEFLKVKQK 518 (539)
Q Consensus 468 ~~~~~~~~~ie~~~~~~~gGRPH--WgK~~~------------~---~~~~l~~~Y--P~~~~F~~~r~~ 518 (539)
..|++|...+-.. +.+||||+- =|+... + +.+..++.| |.++.++++|+.
T Consensus 16 e~y~~Y~~~~~~a-~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~Rq~ 84 (96)
T COG5470 16 EQYKDYVSKAKPA-IEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAIRQA 84 (96)
T ss_pred HHHHHHHHHhHHH-HHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHHHhh
Confidence 4688998888887 899999762 222211 1 224456678 889999999885
No 58
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.41 E-value=68 Score=29.94 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCC
Q 009245 57 RSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSH 96 (539)
Q Consensus 57 ~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~gggh 96 (539)
...+.|..|+..++++++.++.+.|++.|++..++--.|-
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~i~DAGr 159 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYTHLIQDAGR 159 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 4457899999999999999999999999998777733333
No 59
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=30.03 E-value=1.4e+02 Score=35.83 Aligned_cols=105 Identities=17% Similarity=0.162 Sum_probs=63.4
Q ss_pred cEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCcccCCCCcEEEEcCCCCCceEeeCCCCEEEEcCCCCHHHHH
Q 009245 63 ANVAYPASEQELISIVAAAAMTKTRIKVATRFSHSIPKLVCPAGQEGLLISTKHLNRVLKLDVQAMTVTVESGVTLRQVI 142 (539)
Q Consensus 63 ~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs~~~~~~~~~~~gv~I~l~~l~~ii~id~~~~~vtv~aGv~l~~l~ 142 (539)
.....|.|.+|+.++.+ +....+++. ||+-.+...-...-.-.||.+.......+..+...++++|++++.+..
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~--GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~ 288 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVA--GNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETM 288 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEe--ccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHH
Confidence 35678999999999988 333455552 333223222111234577777654322344456679999999999998
Q ss_pred HHHHHcCC-c--------------cCCcccccccceeeeeccCCCC
Q 009245 143 EESAKAGL-A--------------LPYGPYWWGLTVGGMLGTGAHG 173 (539)
Q Consensus 143 ~~l~~~Gl-~--------------l~~~~~~~~~tvgG~i~tg~hG 173 (539)
+.|.+.-- . +.+-+--+..|+||.|.+.+-+
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 289 ELLRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 88865332 1 1111111346999999877665
No 60
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=30.01 E-value=43 Score=34.91 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCCccccccCCCccchhHHHhC-CC-HHHHHHHHHhcCCCCCCcc
Q 009245 475 EEIEQLAVFKYGGLPHWGKNRNLVFDGVIKKY-KN-AGEFLKVKQKFDPLGLFSS 527 (539)
Q Consensus 475 ~~ie~~~~~~~gGRPHWgK~~~~~~~~l~~~Y-P~-~~~F~~~r~~~DP~g~F~n 527 (539)
+++-+. +.++||.--.-....-..+.|.. + |. +.--..+|++|||+++|+.
T Consensus 293 ~~~r~~-~~~~gG~~tl~~a~~~~~~~~~~-~~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 293 AAIRAA-AAAAGGHATLFRAGDRAGPVFHP-LPAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred HHHHHH-HHhcCCEEEEEECCcccccCCCC-CCHHHHHHHHHHHHhcCcccCCCC
Confidence 446665 67888744332221111111222 4 33 6778899999999999975
No 61
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=22.50 E-value=97 Score=32.00 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=29.5
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEE
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKV 90 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v 90 (539)
..|.+.+.-.-..--+-.+|||.+..|+.|++-|+++.|
T Consensus 75 PWWeRYQPvSYKL~tRSGNE~eF~dMV~RCN~VGVRiyV 113 (504)
T KOG2212|consen 75 PWWERYQPVSYKLCTRSGNEDEFRDMVTRCNNVGVRIYV 113 (504)
T ss_pred CceeecccceEEeeccCCCHHHHHHHHHHhhccceEEEe
Confidence 346555555566777888999999999999988876543
No 62
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=21.33 E-value=1.8e+02 Score=25.09 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=35.8
Q ss_pred CCCCCCCccCccEEEeCCCHHHHHHHHHHHHHcCCCeEEEeCCCCC
Q 009245 52 GMFPDRSVCKAANVAYPASEQELISIVAAAAMTKTRIKVATRFSHS 97 (539)
Q Consensus 52 ~nw~~~~~~~p~~v~~P~s~~ev~~~v~~a~~~~~~v~v~~ggghs 97 (539)
..| ...+-+..|+...+++|+.++.+.|.+.|++..++--.|++
T Consensus 42 ~~W--~~~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~~v~DAG~T 85 (115)
T cd02407 42 RAW--ELEGQKKVVLKVPSEEELLELAKKAKELGLPHSLIQDAGRT 85 (115)
T ss_pred HHH--HhCCCcEEEEECCCHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 347 55677899999999999999999999999887666455663
Done!