Query 009246
Match_columns 539
No_of_seqs 388 out of 2407
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 22:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 7E-120 1E-124 859.2 42.7 525 6-536 35-575 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 3.1E-96 7E-101 789.2 56.4 517 6-535 26-561 (657)
3 KOG0101 Molecular chaperones H 100.0 2.4E-96 5E-101 754.0 39.5 534 1-536 1-549 (620)
4 PTZ00009 heat shock 70 kDa pro 100.0 9.7E-94 2.1E-98 777.1 59.2 529 6-536 3-547 (653)
5 PRK13410 molecular chaperone D 100.0 8E-93 1.7E-97 766.5 55.7 516 7-536 2-537 (668)
6 PRK13411 molecular chaperone D 100.0 3.2E-92 7E-97 764.2 57.7 516 7-536 2-537 (653)
7 PTZ00400 DnaK-type molecular c 100.0 2.3E-92 4.9E-97 765.6 56.0 519 4-536 38-576 (663)
8 PLN03184 chloroplast Hsp70; Pr 100.0 1.6E-90 3.6E-95 751.2 58.4 517 6-536 38-574 (673)
9 KOG0102 Molecular chaperones m 100.0 1.3E-92 2.8E-97 696.8 34.9 518 5-536 25-562 (640)
10 PRK00290 dnaK molecular chaper 100.0 3.5E-90 7.7E-95 749.5 57.6 514 7-536 2-535 (627)
11 TIGR01991 HscA Fe-S protein as 100.0 1.3E-89 2.7E-94 738.0 55.7 506 9-535 1-522 (599)
12 PRK05183 hscA chaperone protei 100.0 4.2E-89 9.1E-94 735.2 54.8 507 5-535 17-538 (616)
13 TIGR02350 prok_dnaK chaperone 100.0 1.3E-88 2.9E-93 735.2 56.4 513 8-536 1-533 (595)
14 CHL00094 dnaK heat shock prote 100.0 2.6E-88 5.7E-93 732.4 57.5 516 7-536 2-537 (621)
15 PRK01433 hscA chaperone protei 100.0 1.6E-85 3.5E-90 700.9 51.4 483 7-535 19-516 (595)
16 PF00012 HSP70: Hsp70 protein; 100.0 1.4E-85 3E-90 718.5 51.7 521 9-536 1-539 (602)
17 COG0443 DnaK Molecular chapero 100.0 1.8E-84 3.9E-89 688.8 44.3 498 6-536 4-518 (579)
18 KOG0103 Molecular chaperones H 100.0 2.6E-71 5.7E-76 562.2 38.4 519 9-534 3-579 (727)
19 KOG0104 Molecular chaperones G 100.0 5.7E-63 1.2E-67 502.2 36.0 468 6-485 21-533 (902)
20 PRK11678 putative chaperone; P 100.0 2.7E-54 5.8E-59 445.7 37.6 322 9-371 2-448 (450)
21 PRK13928 rod shape-determining 100.0 3.2E-40 6.8E-45 333.6 33.8 301 10-371 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.8E-39 3.9E-44 327.0 32.4 299 9-368 6-324 (335)
23 TIGR00904 mreB cell shape dete 100.0 1.9E-37 4.2E-42 313.1 32.4 300 10-370 5-327 (333)
24 PRK13927 rod shape-determining 100.0 1.8E-37 3.9E-42 314.0 32.0 301 8-370 6-324 (334)
25 PRK13930 rod shape-determining 100.0 2.2E-36 4.9E-41 306.4 31.8 302 9-371 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 7.8E-33 1.7E-37 272.1 23.3 299 9-368 3-319 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 1.2E-31 2.6E-36 256.1 21.2 203 103-366 36-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 3.2E-29 6.9E-34 236.5 26.5 304 8-372 7-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 1.3E-28 2.9E-33 239.3 27.5 202 106-368 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.4E-22 3E-27 207.9 26.7 194 142-367 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 4E-22 8.7E-27 206.7 28.1 195 145-370 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 1.7E-18 3.6E-23 174.9 23.9 205 132-371 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 2.9E-17 6.3E-22 168.8 18.6 293 9-370 1-347 (371)
34 COG4820 EutJ Ethanolamine util 99.8 2.2E-18 4.9E-23 151.0 8.3 196 110-366 75-270 (277)
35 smart00268 ACTIN Actin. ACTIN 99.7 1.1E-16 2.5E-21 164.6 15.8 291 8-370 2-347 (373)
36 PRK13917 plasmid segregation p 99.7 1.4E-14 3E-19 146.1 23.7 208 131-373 115-339 (344)
37 TIGR03739 PRTRC_D PRTRC system 99.6 9.2E-15 2E-19 146.6 18.2 209 127-368 101-318 (320)
38 PTZ00280 Actin-related protein 99.6 3.5E-14 7.6E-19 147.7 22.7 203 130-345 104-336 (414)
39 PF00022 Actin: Actin; InterP 99.6 2.1E-13 4.5E-18 141.5 20.2 305 5-370 2-367 (393)
40 PTZ00281 actin; Provisional 99.5 8.3E-13 1.8E-17 135.5 19.3 214 129-369 102-349 (376)
41 PTZ00452 actin; Provisional 99.5 2.4E-12 5.1E-17 131.8 22.1 214 129-369 101-348 (375)
42 PTZ00004 actin-2; Provisional 99.5 1.8E-12 3.9E-17 133.2 20.2 214 129-369 102-351 (378)
43 PTZ00466 actin-like protein; P 99.4 9.2E-12 2E-16 127.5 20.7 214 129-369 107-353 (380)
44 PF06406 StbA: StbA protein; 99.3 1.3E-11 2.8E-16 123.5 12.4 174 157-365 141-316 (318)
45 TIGR01175 pilM type IV pilus a 99.1 1E-09 2.2E-14 112.0 16.6 162 140-346 141-307 (348)
46 KOG0679 Actin-related protein 99.1 1E-08 2.2E-13 99.5 19.1 114 107-235 86-202 (426)
47 TIGR00241 CoA_E_activ CoA-subs 99.1 2.6E-08 5.7E-13 96.3 21.0 169 160-366 73-247 (248)
48 COG5277 Actin and related prot 99.0 7.8E-09 1.7E-13 106.7 17.9 98 129-236 107-205 (444)
49 PF11104 PilM_2: Type IV pilus 99.0 2.4E-09 5.2E-14 108.5 13.2 181 142-368 136-339 (340)
50 PF07520 SrfB: Virulence facto 99.0 1.3E-07 2.8E-12 103.5 24.8 327 38-371 331-835 (1002)
51 COG4972 PilM Tfp pilus assembl 98.9 4.1E-07 8.9E-12 87.3 21.3 158 144-346 151-312 (354)
52 PRK10719 eutA reactivating fac 98.8 5E-09 1.1E-13 106.3 6.0 88 129-227 89-184 (475)
53 TIGR02259 benz_CoA_red_A benzo 98.8 2.5E-07 5.5E-12 91.6 15.8 174 160-368 249-432 (432)
54 TIGR03192 benz_CoA_bzdQ benzoy 98.7 2.6E-06 5.7E-11 82.4 20.6 176 160-370 106-288 (293)
55 TIGR03286 methan_mark_15 putat 98.7 2.4E-06 5.1E-11 85.9 20.5 176 160-369 220-402 (404)
56 PRK13317 pantothenate kinase; 98.6 7E-06 1.5E-10 80.0 19.6 49 321-369 222-273 (277)
57 COG1924 Activator of 2-hydroxy 98.6 1.7E-05 3.6E-10 78.0 21.5 175 160-371 211-391 (396)
58 KOG0677 Actin-related protein 98.5 4.7E-06 1E-10 77.0 14.5 221 129-373 102-364 (389)
59 KOG0676 Actin and related prot 98.5 4.2E-06 9E-11 83.7 15.4 190 129-345 100-314 (372)
60 PF08841 DDR: Diol dehydratase 98.2 1.9E-05 4.2E-10 74.1 11.0 190 151-367 105-328 (332)
61 TIGR02261 benz_CoA_red_D benzo 98.1 0.00013 2.8E-09 69.8 16.2 173 161-368 80-262 (262)
62 PF06277 EutA: Ethanolamine ut 98.0 3.4E-05 7.3E-10 78.8 9.6 89 130-224 87-178 (473)
63 KOG0797 Actin-related protein 97.9 0.00017 3.6E-09 73.1 12.0 123 100-234 194-322 (618)
64 COG4457 SrfB Uncharacterized p 97.6 0.0086 1.9E-07 62.9 20.4 83 285-372 744-848 (1014)
65 PF01869 BcrAD_BadFG: BadF/Bad 97.6 0.026 5.6E-07 55.3 23.2 72 294-368 196-271 (271)
66 PF14574 DUF4445: Domain of un 97.4 0.0039 8.5E-08 63.9 15.1 84 284-368 291-375 (412)
67 PF02782 FGGY_C: FGGY family o 97.2 0.00097 2.1E-08 62.0 6.9 76 293-370 120-196 (198)
68 PRK15027 xylulokinase; Provisi 96.5 0.0075 1.6E-07 64.4 8.2 77 295-372 360-436 (484)
69 TIGR01315 5C_CHO_kinase FGGY-f 96.4 0.0096 2.1E-07 64.4 8.4 82 289-372 411-492 (541)
70 PLN02669 xylulokinase 96.4 0.011 2.5E-07 63.9 8.8 72 296-370 421-492 (556)
71 COG1069 AraB Ribulose kinase [ 96.4 0.07 1.5E-06 55.6 13.6 182 185-372 269-480 (544)
72 COG4819 EutA Ethanolamine util 96.2 0.017 3.6E-07 56.0 7.6 89 130-224 89-180 (473)
73 TIGR00555 panK_eukar pantothen 96.2 0.06 1.3E-06 52.4 11.5 47 320-366 229-278 (279)
74 TIGR00744 ROK_glcA_fam ROK fam 96.1 1.6 3.5E-05 43.7 22.2 45 153-201 96-140 (318)
75 KOG0680 Actin-related protein 96.0 0.075 1.6E-06 51.4 10.7 102 129-233 94-198 (400)
76 PRK00047 glpK glycerol kinase; 95.9 0.024 5.3E-07 60.8 8.1 77 294-372 375-452 (498)
77 PRK04123 ribulokinase; Provisi 95.9 0.022 4.8E-07 61.8 7.9 76 295-372 412-488 (548)
78 PTZ00294 glycerol kinase-like 95.9 0.025 5.5E-07 60.7 8.1 78 294-373 378-456 (504)
79 TIGR01312 XylB D-xylulose kina 95.8 0.027 5.9E-07 60.1 8.2 79 293-373 361-440 (481)
80 TIGR02628 fuculo_kin_coli L-fu 95.8 0.026 5.6E-07 60.0 7.8 77 294-372 365-442 (465)
81 PRK10331 L-fuculokinase; Provi 95.7 0.029 6.3E-07 59.7 7.9 77 294-372 361-438 (470)
82 TIGR01311 glycerol_kin glycero 95.7 0.028 6.1E-07 60.2 7.8 77 294-372 371-448 (493)
83 TIGR01234 L-ribulokinase L-rib 95.7 0.033 7.2E-07 60.3 8.2 77 295-373 409-486 (536)
84 PF01968 Hydantoinase_A: Hydan 95.6 0.033 7.1E-07 55.1 7.2 68 296-366 216-283 (290)
85 TIGR01314 gntK_FGGY gluconate 95.6 0.036 7.8E-07 59.6 8.0 77 294-372 373-450 (505)
86 PRK11031 guanosine pentaphosph 95.5 0.15 3.4E-06 54.4 12.4 80 143-229 93-172 (496)
87 TIGR02627 rhamnulo_kin rhamnul 95.4 0.04 8.6E-07 58.4 7.4 75 296-373 361-436 (454)
88 KOG2517 Ribulose kinase and re 95.4 0.057 1.2E-06 56.5 8.3 78 294-373 386-464 (516)
89 PLN02295 glycerol kinase 95.3 0.046 1E-06 58.8 7.8 78 293-372 378-461 (512)
90 PRK10854 exopolyphosphatase; P 95.3 0.18 3.8E-06 54.2 12.1 92 109-203 65-156 (513)
91 PRK10939 autoinducer-2 (AI-2) 95.2 0.051 1.1E-06 58.6 7.8 78 294-373 381-459 (520)
92 PF14450 FtsA: Cell division p 95.0 0.031 6.7E-07 47.3 4.2 49 186-234 1-54 (120)
93 PRK10640 rhaB rhamnulokinase; 94.9 0.065 1.4E-06 57.0 7.4 74 296-372 349-423 (471)
94 KOG2531 Sugar (pentulose and h 94.5 0.14 3E-06 52.1 7.9 58 311-370 432-489 (545)
95 KOG0681 Actin-related protein 94.4 0.046 9.9E-07 56.5 4.2 68 304-371 539-615 (645)
96 KOG0681 Actin-related protein 94.1 0.57 1.2E-05 48.7 11.5 98 130-235 118-216 (645)
97 COG1070 XylB Sugar (pentulose 93.8 0.22 4.8E-06 53.4 8.5 76 289-371 371-449 (502)
98 PF02541 Ppx-GppA: Ppx/GppA ph 93.5 0.16 3.4E-06 50.2 6.2 78 144-228 74-151 (285)
99 PF07318 DUF1464: Protein of u 92.8 2 4.4E-05 42.8 12.6 71 299-374 242-319 (343)
100 PRK09557 fructokinase; Reviewe 92.3 13 0.00027 36.9 22.4 48 321-368 244-299 (301)
101 PRK09698 D-allose kinase; Prov 92.2 13 0.00029 36.8 23.9 49 321-369 236-295 (302)
102 PRK03011 butyrate kinase; Prov 92.1 9.1 0.0002 39.0 16.7 47 321-367 295-344 (358)
103 PF03702 UPF0075: Uncharacteri 92.0 0.65 1.4E-05 47.2 8.3 76 294-372 260-339 (364)
104 COG0248 GppA Exopolyphosphatas 91.7 2.1 4.5E-05 45.4 11.9 94 106-202 51-147 (492)
105 PRK14878 UGMP family protein; 91.2 4.2 9.1E-05 40.9 13.1 25 321-345 241-265 (323)
106 TIGR03706 exo_poly_only exopol 91.2 0.95 2.1E-05 45.0 8.5 109 109-227 54-163 (300)
107 PF02543 CmcH_NodU: Carbamoylt 90.6 11 0.00023 38.5 15.5 81 287-372 132-215 (360)
108 PTZ00288 glucokinase 1; Provis 90.4 5.1 0.00011 41.5 13.1 19 6-24 25-43 (405)
109 smart00842 FtsA Cell division 90.4 2.6 5.7E-05 38.6 10.1 30 142-171 157-186 (187)
110 PLN02920 pantothenate kinase 1 90.2 8 0.00017 39.4 13.8 49 320-368 296-350 (398)
111 COG1548 Predicted transcriptio 90.0 1.6 3.5E-05 41.3 8.0 73 113-203 76-149 (330)
112 PLN02666 5-oxoprolinase 89.8 5.4 0.00012 47.4 14.0 77 288-367 454-531 (1275)
113 KOG2708 Predicted metalloprote 89.1 4.5 9.7E-05 37.6 10.0 64 299-367 237-301 (336)
114 PTZ00340 O-sialoglycoprotein e 88.6 30 0.00064 35.0 16.6 114 103-226 40-163 (345)
115 PRK09585 anmK anhydro-N-acetyl 88.5 2.2 4.8E-05 43.3 8.7 71 297-371 265-339 (365)
116 PRK09604 UGMP family protein; 87.6 34 0.00073 34.5 18.6 47 321-367 254-305 (332)
117 PRK14101 bifunctional glucokin 87.5 52 0.0011 36.5 19.8 20 152-171 103-122 (638)
118 COG0533 QRI7 Metal-dependent p 87.2 11 0.00023 37.7 12.2 73 289-367 230-308 (342)
119 COG0554 GlpK Glycerol kinase [ 86.1 2.9 6.4E-05 43.3 7.9 86 286-373 365-452 (499)
120 TIGR00329 gcp_kae1 metallohydr 85.5 16 0.00034 36.4 12.8 25 321-345 258-282 (305)
121 PF14450 FtsA: Cell division p 85.4 0.44 9.6E-06 40.2 1.5 58 110-171 49-119 (120)
122 TIGR03723 bact_gcp putative gl 85.3 20 0.00043 35.9 13.4 45 321-365 259-308 (314)
123 TIGR03281 methan_mark_12 putat 83.5 7.8 0.00017 37.9 9.0 49 322-373 263-314 (326)
124 COG2377 Predicted molecular ch 83.4 15 0.00032 37.0 11.2 54 319-372 288-345 (371)
125 TIGR03722 arch_KAE1 universal 83.4 52 0.0011 33.0 15.7 43 321-363 242-289 (322)
126 COG5026 Hexokinase [Carbohydra 82.3 66 0.0014 33.3 20.2 85 144-228 184-297 (466)
127 TIGR00143 hypF [NiFe] hydrogen 78.8 3.3 7.2E-05 46.2 5.5 49 321-369 658-711 (711)
128 PRK00976 hypothetical protein; 78.5 18 0.0004 36.0 10.0 50 321-373 263-314 (326)
129 COG0145 HyuA N-methylhydantoin 78.1 2.6 5.7E-05 46.4 4.4 41 159-202 256-296 (674)
130 COG2192 Predicted carbamoyl tr 77.2 94 0.002 33.2 15.0 82 287-373 255-338 (555)
131 PRK09605 bifunctional UGMP fam 76.5 1.2E+02 0.0025 32.9 21.6 52 321-372 245-301 (535)
132 cd06007 R3H_DEXH_helicase R3H 75.6 10 0.00022 27.4 5.5 29 130-158 16-44 (59)
133 PF03630 Fumble: Fumble ; Int 75.5 16 0.00034 37.0 8.8 48 320-367 286-339 (341)
134 KOG0678 Actin-related protein 75.2 87 0.0019 31.1 13.2 97 130-232 108-207 (415)
135 PF00370 FGGY_N: FGGY family o 69.0 3.3 7.2E-05 39.7 2.3 16 8-23 1-16 (245)
136 smart00732 YqgFc Likely ribonu 68.6 4.1 9E-05 32.6 2.4 17 8-24 2-18 (99)
137 PRK07058 acetate kinase; Provi 65.8 42 0.00091 34.5 9.4 46 297-346 298-344 (396)
138 cd02640 R3H_NRF R3H domain of 65.7 26 0.00056 25.5 5.7 40 118-158 6-45 (60)
139 PRK00047 glpK glycerol kinase; 63.9 5.3 0.00011 42.9 2.8 18 7-24 5-22 (498)
140 TIGR03123 one_C_unchar_1 proba 63.5 5 0.00011 40.0 2.3 19 184-202 128-146 (318)
141 COG2971 Predicted N-acetylgluc 62.4 1.7E+02 0.0036 29.0 23.0 66 299-372 227-293 (301)
142 KOG1369 Hexokinase [Carbohydra 61.5 14 0.0003 38.8 5.2 65 134-204 184-251 (474)
143 PRK10331 L-fuculokinase; Provi 61.5 5.8 0.00013 42.2 2.6 18 7-24 2-19 (470)
144 COG1070 XylB Sugar (pentulose 61.4 6.2 0.00013 42.4 2.8 19 6-24 3-21 (502)
145 PRK05082 N-acetylmannosamine k 61.0 38 0.00083 33.2 8.2 49 321-369 233-287 (291)
146 PF14574 DUF4445: Domain of un 60.4 40 0.00087 35.0 8.3 97 186-339 3-101 (412)
147 PF03652 UPF0081: Uncharacteri 59.9 6.9 0.00015 33.7 2.3 17 8-24 2-18 (135)
148 PF08735 DUF1786: Putative pyr 59.8 1.4E+02 0.003 28.7 11.1 94 125-225 111-206 (254)
149 PRK10939 autoinducer-2 (AI-2) 59.7 6.4 0.00014 42.5 2.5 18 7-24 3-20 (520)
150 COG2441 Predicted butyrate kin 59.3 60 0.0013 31.4 8.4 55 320-374 272-336 (374)
151 PTZ00294 glycerol kinase-like 58.7 6.9 0.00015 42.0 2.5 17 8-24 3-19 (504)
152 COG1940 NagC Transcriptional r 57.7 2E+02 0.0044 28.4 23.4 37 155-194 107-143 (314)
153 PRK13310 N-acetyl-D-glucosamin 57.6 48 0.001 32.7 8.3 48 321-368 245-300 (303)
154 PLN02362 hexokinase 57.5 2E+02 0.0044 30.9 13.1 34 141-174 205-240 (509)
155 COG3426 Butyrate kinase [Energ 57.5 36 0.00079 33.0 6.7 48 319-366 294-344 (358)
156 PLN02405 hexokinase 56.6 2.3E+02 0.0049 30.4 13.3 51 141-197 205-257 (497)
157 cd04036 C2_cPLA2 C2 domain pre 56.6 93 0.002 25.6 8.7 70 408-482 44-116 (119)
158 PTZ00107 hexokinase; Provision 55.7 2.5E+02 0.0054 29.8 13.3 41 136-176 189-231 (464)
159 cd02641 R3H_Smubp-2_like R3H d 55.2 55 0.0012 23.7 6.0 29 130-158 17-45 (60)
160 PLN02596 hexokinase-like 54.9 2.9E+02 0.0064 29.5 13.8 53 141-199 205-259 (490)
161 PLN02914 hexokinase 54.8 2E+02 0.0044 30.6 12.5 54 141-200 205-260 (490)
162 PLN02902 pantothenate kinase 54.7 71 0.0015 36.2 9.4 49 320-369 345-400 (876)
163 PRK15027 xylulokinase; Provisi 54.2 8.8 0.00019 41.0 2.4 17 8-24 1-17 (484)
164 PRK13331 pantothenate kinase; 53.5 13 0.00029 35.7 3.3 24 1-24 1-24 (251)
165 PRK13310 N-acetyl-D-glucosamin 52.7 2.3E+02 0.0049 27.9 12.2 45 153-201 95-139 (303)
166 TIGR02707 butyr_kinase butyrat 52.4 46 0.001 33.8 7.2 67 296-365 271-340 (351)
167 PRK00109 Holliday junction res 51.4 15 0.00032 31.8 2.9 19 6-24 3-21 (138)
168 COG5026 Hexokinase [Carbohydra 51.1 68 0.0015 33.2 7.9 31 182-212 73-104 (466)
169 PRK04123 ribulokinase; Provisi 50.8 11 0.00025 40.9 2.7 18 7-24 3-20 (548)
170 TIGR02628 fuculo_kin_coli L-fu 50.6 11 0.00024 40.0 2.5 17 8-24 2-18 (465)
171 TIGR01311 glycerol_kin glycero 50.2 11 0.00025 40.3 2.5 17 8-24 2-18 (493)
172 KOG0797 Actin-related protein 49.9 6.7 0.00014 40.9 0.6 51 322-372 527-591 (618)
173 COG0816 Predicted endonuclease 49.6 14 0.00031 31.9 2.6 18 7-24 2-19 (141)
174 COG0554 GlpK Glycerol kinase [ 49.2 67 0.0014 33.7 7.6 32 6-45 4-35 (499)
175 TIGR01314 gntK_FGGY gluconate 49.1 12 0.00026 40.2 2.5 17 8-24 1-17 (505)
176 PLN02295 glycerol kinase 48.8 12 0.00027 40.2 2.5 17 8-24 1-17 (512)
177 cd02646 R3H_G-patch R3H domain 48.8 50 0.0011 23.7 4.9 40 116-158 4-43 (58)
178 TIGR01234 L-ribulokinase L-rib 48.2 13 0.00028 40.3 2.6 17 8-24 2-18 (536)
179 cd02639 R3H_RRM R3H domain of 47.7 51 0.0011 23.9 4.8 30 130-159 17-46 (60)
180 TIGR01315 5C_CHO_kinase FGGY-f 46.8 13 0.00029 40.2 2.4 16 9-24 2-17 (541)
181 PF00349 Hexokinase_1: Hexokin 46.2 29 0.00063 32.3 4.3 29 182-210 61-90 (206)
182 cd00529 RuvC_resolvase Hollida 44.6 17 0.00036 32.1 2.3 16 9-24 2-17 (154)
183 COG4012 Uncharacterized protei 42.0 1.8E+02 0.004 28.0 8.7 70 159-235 207-276 (342)
184 PTZ00297 pantothenate kinase; 41.5 1.9E+02 0.0042 35.5 11.0 49 319-367 1389-1443(1452)
185 PLN02377 3-ketoacyl-CoA syntha 41.2 90 0.002 33.4 7.5 54 293-346 165-219 (502)
186 PF02685 Glucokinase: Glucokin 41.1 3.2E+02 0.007 27.3 11.0 124 104-237 37-182 (316)
187 PLN02669 xylulokinase 41.0 20 0.00044 39.0 2.7 19 6-24 7-25 (556)
188 TIGR02261 benz_CoA_red_D benzo 40.4 22 0.00047 34.4 2.5 16 8-23 2-17 (262)
189 PRK11199 tyrA bifunctional cho 39.5 2.6E+02 0.0055 28.7 10.4 96 222-343 13-120 (374)
190 KOG2872 Uroporphyrinogen decar 39.3 76 0.0016 30.9 5.8 68 287-359 219-287 (359)
191 PF13941 MutL: MutL protein 37.9 19 0.0004 37.9 1.7 29 318-346 382-411 (457)
192 KOG2517 Ribulose kinase and re 36.7 46 0.00099 35.4 4.3 19 6-24 5-23 (516)
193 PRK00180 acetate kinase A/prop 36.5 1.1E+02 0.0024 31.6 7.0 47 297-346 302-349 (402)
194 KOG1794 N-Acetylglucosamine ki 36.0 1.1E+02 0.0025 29.9 6.5 68 306-373 246-319 (336)
195 COG3894 Uncharacterized metal- 35.8 2.2E+02 0.0048 30.2 8.8 45 185-229 165-210 (614)
196 PRK00039 ruvC Holliday junctio 35.7 27 0.00059 31.2 2.2 18 7-24 2-19 (164)
197 PLN03173 chalcone synthase; Pr 33.9 1.7E+02 0.0036 30.3 8.0 48 299-346 101-149 (391)
198 PF08392 FAE1_CUT1_RppA: FAE1/ 33.4 1E+02 0.0022 30.3 5.9 44 303-346 86-130 (290)
199 KOG2707 Predicted metalloprote 33.2 5.3E+02 0.012 26.1 17.7 223 107-345 80-329 (405)
200 TIGR00250 RNAse_H_YqgF RNAse H 33.1 24 0.00053 30.1 1.4 15 10-24 1-15 (130)
201 PLN03170 chalcone synthase; Pr 32.8 1.5E+02 0.0033 30.8 7.5 48 299-346 105-153 (401)
202 KOG1369 Hexokinase [Carbohydra 32.7 2.6E+02 0.0056 29.6 9.0 27 181-207 83-109 (474)
203 PRK13321 pantothenate kinase; 32.5 34 0.00074 33.0 2.5 70 290-369 183-252 (256)
204 PLN03172 chalcone synthase fam 32.3 1.8E+02 0.0038 30.2 7.8 49 298-346 100-149 (393)
205 PRK13318 pantothenate kinase; 30.7 38 0.00083 32.7 2.6 17 8-24 1-17 (258)
206 PLN00130 succinate dehydrogena 30.7 14 0.0003 32.9 -0.5 18 7-24 57-74 (213)
207 PRK07515 3-oxoacyl-(acyl carri 29.9 80 0.0017 32.3 4.9 38 297-334 266-303 (372)
208 KOG1385 Nucleoside phosphatase 29.8 44 0.00095 34.3 2.8 20 183-202 212-231 (453)
209 PF00349 Hexokinase_1: Hexokin 29.7 36 0.00079 31.7 2.1 38 136-173 163-203 (206)
210 PLN02854 3-ketoacyl-CoA syntha 29.2 1.3E+02 0.0029 32.3 6.4 53 294-346 182-235 (521)
211 TIGR02627 rhamnulo_kin rhamnul 28.6 26 0.00056 37.1 1.0 15 10-24 1-15 (454)
212 PLN03168 chalcone synthase; Pr 27.7 2.1E+02 0.0046 29.5 7.5 49 298-346 99-148 (389)
213 TIGR00016 ackA acetate kinase. 27.6 2E+02 0.0043 29.8 7.1 45 299-346 308-353 (404)
214 TIGR00067 glut_race glutamate 27.0 1.4E+02 0.003 28.8 5.6 42 321-366 172-213 (251)
215 cd02198 YjgH_like YjgH belongs 25.5 1.6E+02 0.0034 24.1 5.0 50 298-347 32-83 (111)
216 PLN02914 hexokinase 25.4 2.1E+02 0.0045 30.6 7.0 24 182-205 93-116 (490)
217 PF00815 Histidinol_dh: Histid 25.1 1.2E+02 0.0026 31.4 5.0 50 127-176 136-186 (412)
218 PRK00292 glk glucokinase; Prov 25.0 55 0.0012 32.6 2.6 48 153-201 89-144 (316)
219 PF13941 MutL: MutL protein 24.9 1.8E+02 0.0038 30.8 6.3 47 186-232 2-49 (457)
220 PRK14878 UGMP family protein; 24.9 98 0.0021 31.0 4.4 44 296-339 40-83 (323)
221 TIGR03722 arch_KAE1 universal 24.7 1.2E+02 0.0025 30.5 4.9 43 296-338 41-83 (322)
222 cd00327 cond_enzymes Condensin 24.4 3E+02 0.0066 25.8 7.6 44 304-347 11-56 (254)
223 COG1940 NagC Transcriptional r 24.3 3.3E+02 0.0072 26.8 8.1 56 182-237 4-59 (314)
224 PRK00865 glutamate racemase; P 24.2 2.3E+02 0.0049 27.4 6.6 43 321-367 177-219 (261)
225 cd08681 C2_fungal_Inn1p-like C 24.2 3.4E+02 0.0073 22.0 7.0 48 403-453 38-86 (118)
226 cd04043 C2_Munc13_fungal C2 do 24.2 4.1E+02 0.0088 21.9 8.4 72 407-482 44-119 (126)
227 COG4012 Uncharacterized protei 23.9 68 0.0015 30.8 2.7 49 185-234 2-73 (342)
228 COG0533 QRI7 Metal-dependent p 23.6 1.8E+02 0.0039 29.3 5.7 46 295-340 45-90 (342)
229 smart00732 YqgFc Likely ribonu 23.5 1.9E+02 0.0041 22.7 5.1 21 185-205 2-22 (99)
230 PRK15080 ethanolamine utilizat 23.5 2.6E+02 0.0056 27.1 6.9 50 181-230 21-70 (267)
231 PF02801 Ketoacyl-synt_C: Beta 23.2 1.2E+02 0.0027 25.1 4.0 47 301-347 24-72 (119)
232 TIGR00329 gcp_kae1 metallohydr 23.2 1.2E+02 0.0026 30.1 4.6 47 295-341 43-89 (305)
233 cd04052 C2B_Tricalbin-like C2 22.8 2.5E+02 0.0055 22.7 5.8 72 407-482 33-107 (111)
234 PRK13321 pantothenate kinase; 22.8 3.3E+02 0.0072 26.1 7.5 45 186-232 2-47 (256)
235 cd08376 C2B_MCTP_PRT C2 domain 22.3 4.2E+02 0.0091 21.4 8.8 72 407-482 40-113 (116)
236 PTZ00340 O-sialoglycoprotein e 22.1 1.5E+02 0.0032 30.1 5.0 47 295-341 44-90 (345)
237 PRK13320 pantothenate kinase; 22.0 72 0.0016 30.6 2.6 45 289-334 172-216 (244)
238 TIGR01312 XylB D-xylulose kina 21.7 45 0.00097 35.4 1.3 15 10-24 1-15 (481)
239 TIGR01319 glmL_fam conserved h 21.3 47 0.001 34.8 1.3 45 314-358 382-432 (463)
240 PF00871 Acetate_kinase: Aceto 21.1 9.3E+02 0.02 24.9 15.5 142 142-345 180-345 (388)
241 TIGR01198 pgl 6-phosphoglucono 20.8 2.1E+02 0.0046 27.1 5.6 45 294-343 6-50 (233)
242 TIGR03723 bact_gcp putative gl 20.7 1.5E+02 0.0032 29.7 4.6 46 296-341 45-90 (314)
243 PRK00877 hisD bifunctional his 20.5 1.2E+02 0.0026 31.5 3.9 49 127-176 150-199 (425)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-120 Score=859.23 Aligned_cols=525 Identities=64% Similarity=0.995 Sum_probs=512.3
Q ss_pred CCCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
...+||||||||||||+++ .+||+|+|.+++|++|+.|+++...+|++++++.||+||+.|+++.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 5679999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEc-CCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (539)
+|.+++.|||+++. .+++|.+.|... ++.+.++|+++++|+|.++++.|+.|+|.+++++|+||||||++.||+++++
T Consensus 115 vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 99999999999986 778999999988 5688999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHH
Q 009246 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (539)
Q Consensus 150 Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 229 (539)
|...|||+++++|+||+|||++|++++. ..+.++||||+||||||||++.+.+|.|+|+++.|+.++||.+||++++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk---~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKK---DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred cceeccceEEEeecCccHHHHHhccccc---CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 9999999999999999999999999887 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009246 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (539)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~ 309 (539)
+|+.+-|+++++.+++.+.+++.+|+++||+||+.||+..++.+.++++++|.||+-++||+.||++..+++.+.+.+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeeccc
Q 009246 310 KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 389 (539)
Q Consensus 310 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~ 389 (539)
++|+++++.+.+|+.|+||||++|+|.||+.|+++|.|+++....||++|||+|||.+|..++|. ....++++.|++|
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~p 428 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNP 428 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999964 5678899999999
Q ss_pred cccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEE
Q 009246 390 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 469 (539)
Q Consensus 390 ~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~ 469 (539)
+++||++.+|.|..+||||+.||++++..|+++.|||+.+.|.+|+|++.+..+|++||.|.+.||||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 470 DIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 470 ~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
++|.||+|+|+|.|+.+|++++|++++....++.++++||.+.+++|..+++..+++.++||+||+-
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Y 575 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESY 575 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999973
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=3.1e-96 Score=789.24 Aligned_cols=517 Identities=49% Similarity=0.800 Sum_probs=480.2
Q ss_pred CCCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
...+||||||||||++|++ .+||+|+|.++++++|..|+++...+|.++++++||+||+.++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 3469999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
++..++.+||++..+.++...+.. ..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHH
Confidence 999999999999987777655432 33578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||++|++
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKT----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCC----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC---C-eeeEEEEcHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE---G-IDFYSTITRARFEELNMDLFRKCME 306 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~---g-~d~~~~itr~~~e~~~~~~~~~i~~ 306 (539)
|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+.. | .++.+.|||++|+++++|+++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999998876543 2 4578999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeee
Q 009246 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (539)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d 386 (539)
+++++|+++++++.+|+.|+||||+||+|.|++.|+++|+ ..+....||++|||+|||++|+.+++. .+++.+.|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~D 413 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLD 413 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEe
Confidence 9999999999999999999999999999999999999995 556788999999999999999999853 46788999
Q ss_pred ccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEE
Q 009246 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (539)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~ 466 (539)
++|++||+++.++.+.+|||||++||++++..|++..|||+.+.|.||||++..+.+|..||+|+|.++|+.|+|.++|+
T Consensus 414 v~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~ 493 (657)
T PTZ00186 414 VTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIE 493 (657)
T ss_pred eccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCC
Q 009246 467 VCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKT 535 (539)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (539)
|+|++|.||+|+|++.+..||++..++++... .++++.+++|.+...++..+++..+++.+++|++|.
T Consensus 494 Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 561 (657)
T PTZ00186 494 VTFDIDANGICHVTAKDKATGKTQNITITANG-GLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAET 561 (657)
T ss_pred EEEEEcCCCEEEEEEEEccCCcEEEEEeccCc-cCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998544 588889999999999998888888887777766554
No 3
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-96 Score=753.95 Aligned_cols=534 Identities=72% Similarity=1.087 Sum_probs=518.9
Q ss_pred CCCCCCCCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCC
Q 009246 1 MAGKGEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRR 65 (539)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 65 (539)
|++.....++|||||||++|++++ .+||+|+|.+.++++|..|..+...+|.++++++||++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 556667889999999999999999 79999999999999999999999999999999999999999
Q ss_pred CCChhhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHH
Q 009246 66 FSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQ 145 (539)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~ 145 (539)
++++.++.+++.|||++..+.++.+.+.+.+.++.+.++|+++.+++|.++++.|+.+++..+.++|+|||+||++.||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHH
Q 009246 146 ATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 225 (539)
Q Consensus 146 ~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 225 (539)
++.+|+..|||+++++++||+|||++|++.+. .....+++|+|+||||||++++.+.+|.+.++++.++.++||.+||
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~--~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~ 238 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKK--VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFD 238 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhcccc--ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhh
Confidence 99999999999999999999999999997666 4567889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHH
Q 009246 226 NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCM 305 (539)
Q Consensus 226 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~ 305 (539)
+.+.+|+..+|+++++.++..+++.+++|+.+||.+|+.||...++++.++++++|.|+...|+|.+|++++.+++.++.
T Consensus 239 ~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 239 NKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeee
Q 009246 306 EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 385 (539)
Q Consensus 306 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~ 385 (539)
+++..+|+++++++.+|+.|+||||++++|.++..+++.|+++.+..+.|||++||+|||++|+.+++.......++.+.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877777899999
Q ss_pred eccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEE
Q 009246 386 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 465 (539)
Q Consensus 386 d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 465 (539)
|+.|.++|+++.++.|.++|++|+++|++++.+|++..|||+.+.|.||+|++.+..+|+++|.|.+.||||+|+|+++|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 466 TVCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 466 ~v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
+++|.+|.+|+|+|++.+.+||+++.+++++....++++.++||...+..++.++...+.+.+.+|.||++
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~ 549 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESY 549 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=9.7e-94 Score=777.06 Aligned_cols=529 Identities=75% Similarity=1.117 Sum_probs=498.7
Q ss_pred CCCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
+..+||||||||||+||++ .+||+|+|.++++++|..|+.+..++|.++++++||+||+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 5679999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
++...+.|||.+..+.++.+.+.+.+.+..+.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999999889999999998888889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+..+.. ..+.++||||+||||||+|++++.++.++++++.|+..+||++||.+|++
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999999999999999999999876542 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (539)
Q Consensus 231 ~l~~~~~~~~~-~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~ 309 (539)
|+.++|.+++. .++..+++.+.+|+.+||++|+.||.+.++.+.++.++++.++.+.|||++|+++++|+++++.+.|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999988763 66777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeeccc
Q 009246 310 KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 389 (539)
Q Consensus 310 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~ 389 (539)
++|+.++++..+|+.|+||||+||+|+|+++|++.|++..+....||++|||+|||++|+.+++...++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 99999999999999999999999999999999999977778888999999999999999999865456677899999999
Q ss_pred cccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEE
Q 009246 390 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 469 (539)
Q Consensus 390 ~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~ 469 (539)
++||++..++.+.+||++|+++|++++.+|++..++|+.+.|.||||++....+|..||++.|.++|+.++|.++|+++|
T Consensus 401 ~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f 480 (653)
T PTZ00009 401 LSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTF 480 (653)
T ss_pred cccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999988899999
Q ss_pred EecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 470 DIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 470 ~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
++|.||+|+|++.+..||++..+++......++++.++++.+....+..+++..+++.+.+|+||++
T Consensus 481 ~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~ 547 (653)
T PTZ00009 481 DIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENY 547 (653)
T ss_pred EECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 9999999999999999999998888766666888899999999999999999999999999999975
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8e-93 Score=766.46 Aligned_cols=516 Identities=50% Similarity=0.790 Sum_probs=478.3
Q ss_pred CCEEEEEcCccceeeeEE---------------ecceEEEec-CCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
..+||||||||||+||++ .+||+|+|. ++++++|..|+++...+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 468999999999999998 799999997 46899999999999999999999999999999865
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
++...+.+||++..++++...+.+ ...++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~--~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKC--PRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEE--ecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 455667899999988877665554 334578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||++|++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRKCME 306 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g----~d~~~~itr~~~e~~~~~~~~~i~~ 306 (539)
|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++...|||++|++++.++++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999988888888889999999999999999999999999988876543 4688899999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeee
Q 009246 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (539)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d 386 (539)
+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++....||++|||+|||++|+.+++ ..+++.+.|
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~D 388 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLD 388 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEe
Confidence 999999999999999999999999999999999999999 466788899999999999999999985 356789999
Q ss_pred ccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEE
Q 009246 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (539)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~ 466 (539)
++|++||+++.++.+.+|||+|++||++++.+|++..+||+.+.|.||||++....+|..||+|.|.++|++++|.++|+
T Consensus 389 v~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~ 468 (668)
T PRK13410 389 VTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQ 468 (668)
T ss_pred eccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 467 VCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
|+|++|.||+|+|++.+..||++..+.+... ..++++.++++.+....+..+++..+++..+||++|++
T Consensus 469 v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~ 537 (668)
T PRK13410 469 VAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTL 537 (668)
T ss_pred EEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888654 45888899999999999999999999999999998864
No 6
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.2e-92 Score=764.16 Aligned_cols=516 Identities=51% Similarity=0.801 Sum_probs=478.7
Q ss_pred CCEEEEEcCccceeeeEE---------------ecceEEEecC-CceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
+.+||||||||||++|++ .+||+|+|.+ +++++|..|+.+...+|.++++++|||||+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 358999999999999997 6899999975 589999999999999999999999999999998864
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
...+.+||+++.+.++...+.+ . +..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 3457899999887776655544 2 467999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+..+. ..+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|++
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~---~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~ 232 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQ---DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVD 232 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccc---CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHH
Confidence 999999999999999999999987654 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCME 306 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~----g~d~~~~itr~~~e~~~~~~~~~i~~ 306 (539)
|+.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++.+.|||++|+++++|+++++..
T Consensus 233 ~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~ 312 (653)
T PRK13411 233 WLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIE 312 (653)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999998888888888999999999999999999999999998886643 35788999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeee
Q 009246 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (539)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d 386 (539)
+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|++..+..+.||++|||+|||++|+.+++. .+++.+.|
T Consensus 313 ~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~d 388 (653)
T PRK13411 313 PMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLD 388 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeee
Confidence 99999999999999999999999999999999999999977778888999999999999999999853 56788999
Q ss_pred ccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEE
Q 009246 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (539)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~ 466 (539)
++|++||+++.++.+.+||+||+++|++++..|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|++++|.++|+
T Consensus 389 v~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 468 (653)
T PRK13411 389 VTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIE 468 (653)
T ss_pred cccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 467 VCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
++|++|.||+|+|++.+..+|++..+.+++. ..++++.++++.+....+..+++..+++.++||+||++
T Consensus 469 v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~ 537 (653)
T PRK13411 469 VSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSL 537 (653)
T ss_pred EEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888754 45888999999999999999999999999999999974
No 7
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.3e-92 Score=765.58 Aligned_cols=519 Identities=52% Similarity=0.828 Sum_probs=483.1
Q ss_pred CCCCCEEEEEcCccceeeeEE---------------ecceEEEecC-CceEecHHHHhhHhhCCCchhhhhhHhhCCCCC
Q 009246 4 KGEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFS 67 (539)
Q Consensus 4 ~~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~ 67 (539)
+.+..+||||||||||++|++ .+||+|+|.+ +++++|..|+.+...+|.++++++||+||++++
T Consensus 38 ~~~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~ 117 (663)
T PTZ00400 38 KATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYD 117 (663)
T ss_pred hhcCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcC
Confidence 335579999999999999998 7999999975 579999999999999999999999999999999
Q ss_pred ChhhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHH
Q 009246 68 DASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQAT 147 (539)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 147 (539)
++.++...+.+||++..++++...+.+ .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++
T Consensus 118 d~~~~~~~~~~p~~~~~~~~~~~~~~~----~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~ 193 (663)
T PTZ00400 118 EDATKKEQKILPYKIVRASNGDAWIEA----QGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQAT 193 (663)
T ss_pred cHHHHhhhccCCeEEEecCCCceEEEE----CCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHH
Confidence 999999999999999988877766654 2468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHH
Q 009246 148 KDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 227 (539)
Q Consensus 148 ~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 227 (539)
++||+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||+.
T Consensus 194 ~~Aa~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~ 269 (663)
T PTZ00400 194 KDAGKIAGLDVLRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQR 269 (663)
T ss_pred HHHHHHcCCceEEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHH
Confidence 999999999999999999999999987654 4679999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHH
Q 009246 228 MVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRK 303 (539)
Q Consensus 228 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g----~d~~~~itr~~~e~~~~~~~~~ 303 (539)
|++|+.++|+++++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++++|++++
T Consensus 270 l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~ 349 (663)
T PTZ00400 270 ILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKK 349 (663)
T ss_pred HHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHH
Confidence 999999999988888888889999999999999999999999888888766543 5788999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCcccccee
Q 009246 304 CMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLL 383 (539)
Q Consensus 304 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~ 383 (539)
+.++++++|+++++.+.+|+.|+||||+|++|+|++.|++.|+ .++....||+++||+|||++|+.+++. .+++.
T Consensus 350 ~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~ 424 (663)
T PTZ00400 350 TIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLL 424 (663)
T ss_pred HHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceE
Confidence 9999999999999999999999999999999999999999994 567788999999999999999999852 56788
Q ss_pred eeeccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcC
Q 009246 384 LLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVP 463 (539)
Q Consensus 384 ~~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~ 463 (539)
+.|++|++||+++.++.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.++|.+
T Consensus 425 ~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~ 504 (663)
T PTZ00400 425 LLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVP 504 (663)
T ss_pred EEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 464 QITVCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 464 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
+|+|+|++|.||+|+|++.+..+|++..+.++.. ..++.+.++++.+...++..+++..+++.++||+||++
T Consensus 505 ~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~ 576 (663)
T PTZ00400 505 QIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETL 576 (663)
T ss_pred eEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888754 35888899999999999999999999999999999974
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.6e-90 Score=751.22 Aligned_cols=517 Identities=50% Similarity=0.776 Sum_probs=477.8
Q ss_pred CCCEEEEEcCccceeeeEE---------------ecceEEEecC-CceEecHHHHhhHhhCCCchhhhhhHhhCCCCCCh
Q 009246 6 EGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (539)
+..+||||||||||++|++ .+||+|+|.+ +++++|..|+++...+|.++++++|||||+++.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 4569999999999999998 7999999974 5799999999999999999999999999999876
Q ss_pred hhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009246 70 SVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (539)
++...+.+||++..++++...+.+.. .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPA--IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45667789999998877766555443 346899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHH
Q 009246 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (539)
Q Consensus 150 Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 229 (539)
||+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||+.|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHH
Q 009246 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCM 305 (539)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~----g~d~~~~itr~~~e~~~~~~~~~i~ 305 (539)
+|+.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++...|||++|+++++++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999888888888999999999999999999999999988876542 2578899999999999999999999
Q ss_pred HHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeee
Q 009246 306 EPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLL 385 (539)
Q Consensus 306 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~ 385 (539)
.+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.| +..+....||++|||+|||++|+.+++ +.+++.+.
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~ 424 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLL 424 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEE
Confidence 9999999999999999999999999999999999999999 566778899999999999999999985 35678899
Q ss_pred eccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEE
Q 009246 386 DVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI 465 (539)
Q Consensus 386 d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i 465 (539)
|++|++||+++.++.+.+|||+|+++|++++++|++..|+|+.+.|.+|||++....+|..||+|.|+++|+.++|.++|
T Consensus 425 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i 504 (673)
T PLN03184 425 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 504 (673)
T ss_pred ecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 466 TVCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 466 ~v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
+++|++|.||+|+|++.+..+|++..+.++.. ..++++.++++.+....+..+++..+++.++||+||.+
T Consensus 505 ~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~ 574 (673)
T PLN03184 505 EVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSV 574 (673)
T ss_pred EEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999988754 45888899999999999999999999999999999975
No 9
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-92 Score=696.75 Aligned_cols=518 Identities=55% Similarity=0.829 Sum_probs=495.5
Q ss_pred CCCCEEEEEcCccceeeeEE---------------ecceEEEec-CCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCC
Q 009246 5 GEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 68 (539)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 68 (539)
....++|||+||||||+++. .+||+|+|. ++++++|..|+++...+|.|+++.-||+||+.|.+
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 35669999999999999998 799999996 45899999999999999999999999999999999
Q ss_pred hhhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009246 69 ASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (539)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (539)
+.++.+++..||+++...++..+++. .+..++|.++.+++|.+++++|+.+++..+..+|+||||||++.||++++
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 99999999999999998888877766 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 009246 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (539)
Q Consensus 149 ~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 228 (539)
+|.++||++++++++||+|||++|+++.. .+..++|||+||||||++++.+.++.+++.++.|+.++||.+||..+
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~ 256 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKK----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNAL 256 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhccccc----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHH
Confidence 99999999999999999999999999876 36789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCC----eeeEEEEcHHHHHHHHHHHHHHH
Q 009246 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMDLFRKC 304 (539)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g----~d~~~~itr~~~e~~~~~~~~~i 304 (539)
.+++...|++..+.++..+..++.++..++|++|+.||...+..+.++.+..+ ..+++++||.+||+++.+++++.
T Consensus 257 ~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rt 336 (640)
T KOG0102|consen 257 VRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIART 336 (640)
T ss_pred HHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999877654 56889999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceee
Q 009246 305 MEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLL 384 (539)
Q Consensus 305 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~ 384 (539)
+++++++|++|++..++|+.|+|+||.+|+|.+++.+++.| +.......||+++||.|||+++..++++ ++++.+
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceee
Confidence 99999999999999999999999999999999999999999 5677888999999999999999999874 889999
Q ss_pred eeccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCE
Q 009246 385 LDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQ 464 (539)
Q Consensus 385 ~d~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~ 464 (539)
.|++|+++|+++.++.|..||++|+.||++++..|.++.|+|+.+.|.+|||+++...+|.++|+|.+.||||+|+|.|+
T Consensus 412 LdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 412 LDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred eecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 465 ITVCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 465 i~v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
|+|+|.+|.||+++|+|.|..|||+.+|++..... +++.++++|.+.+++++..++..++..+..|.-|++
T Consensus 492 ieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sgg-Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~ 562 (640)
T KOG0102|consen 492 IEVTFDIDANGIGTVSAKDKGTGKSQSITIASSGG-LSKDEIELMVGEAERLASTDKEKREAIETKNKADSI 562 (640)
T ss_pred eeEEEeecCCceeeeehhhcccCCccceEEeecCC-CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhhe
Confidence 99999999999999999999999999999988877 999999999999999999999999999999887775
No 10
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.5e-90 Score=749.48 Aligned_cols=514 Identities=54% Similarity=0.856 Sum_probs=477.7
Q ss_pred CCEEEEEcCccceeeeEE---------------ecceEEEec-CCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
+.+||||||||||++|++ .+||+|+|. ++++++|..|+.+...+|.++++++||+||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 368999999999999998 799999997 67899999999999999999999999999998 667
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
++.+.+.+||++..++++...+.+ . ++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEI--D--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 788888999999988777665543 3 468999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||.+||++|++
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCME 306 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~----g~d~~~~itr~~~e~~~~~~~~~i~~ 306 (539)
|+.++|+++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++|+++++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 311 (627)
T PRK00290 232 YLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIE 311 (627)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999998887654 26788999999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeee
Q 009246 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (539)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d 386 (539)
+|+++|+.+++++.+|+.|+||||+||+|+|++.|++.| +.++....||++|||+|||++|+.+++ +.+++.+.|
T Consensus 312 ~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d 386 (627)
T PRK00290 312 PCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLD 386 (627)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeeee
Confidence 999999999999999999999999999999999999999 567788899999999999999999985 356789999
Q ss_pred ccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEE
Q 009246 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (539)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~ 466 (539)
++|++||+++.++.+.+|||+|+++|++++.+|++..++|+.+.|.+|||++....+|..||++.|.++|+.++|.++|+
T Consensus 387 ~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 387 VTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred ccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 467 VCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
++|++|.||+|+|++.+..+|++.++.++.. ..++.+.++++.+....+..+++..+++..+||+||++
T Consensus 467 v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~ 535 (627)
T PRK00290 467 VTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSL 535 (627)
T ss_pred EEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988754 35778888999999999999999999999999999864
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.3e-89 Score=737.99 Aligned_cols=506 Identities=41% Similarity=0.654 Sum_probs=457.2
Q ss_pred EEEEEcCccceeeeEE---------------ecceEEEecCC-ceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhh
Q 009246 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQ 72 (539)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 72 (539)
+||||||||||+||++ .+||+|+|.++ .+++|..|+.+...+|.++++++||++|+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999997 69999999865 899999999999999999999999999999876432
Q ss_pred ccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 009246 73 GDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGV 152 (539)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 152 (539)
.+.+||++..++++...+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 567899998777766665542 2 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHH
Q 009246 153 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHF 232 (539)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 232 (539)
.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|++++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 233 VQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCL 312 (539)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l 312 (539)
.+++ +.+...+++.+.+|+.+||++|+.||.+.++.+.++. +|.++.+.|||++|+++++|+++++.++|+++|
T Consensus 230 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L 303 (599)
T TIGR01991 230 LKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRAL 303 (599)
T ss_pred HHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9765 3444567888999999999999999999998888863 788999999999999999999999999999999
Q ss_pred HHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeecccccc
Q 009246 313 RDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSL 392 (539)
Q Consensus 313 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~~s~ 392 (539)
+++++.+.+|+.|+||||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++. ....++.+.|++|++|
T Consensus 304 ~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~sl 380 (599)
T TIGR01991 304 RDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSL 380 (599)
T ss_pred HHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeee
Confidence 9999999999999999999999999999999995 556778899999999999999999843 3445789999999999
Q ss_pred ceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEEec
Q 009246 393 GLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDID 472 (539)
Q Consensus 393 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~d 472 (539)
|+++.++.+.+|||||+++|++++..|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|
T Consensus 381 gi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 460 (599)
T TIGR01991 381 GIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVD 460 (599)
T ss_pred EEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCC
Q 009246 473 ANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKT 535 (539)
Q Consensus 473 ~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (539)
.||+|+|++.+..||++..+.+++.. .++++.++++.+....+..+++..++....+|++|.
T Consensus 461 ~~gil~V~a~~~~t~~~~~~~i~~~~-~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 522 (599)
T TIGR01991 461 ADGLLTVSAQEQSTGVEQSIQVKPSY-GLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAER 522 (599)
T ss_pred CCCeEEEEEEECCCCcEEEEeccccc-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998887543 477778888888888777776666666656655543
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=4.2e-89 Score=735.24 Aligned_cols=507 Identities=40% Similarity=0.640 Sum_probs=456.4
Q ss_pred CCCCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCCh
Q 009246 5 GEGPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (539)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (539)
....+||||||||||+||++ .+||+|+|.++++++|..|+.+...+|.++++++||++|+.+.+
T Consensus 17 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 95 (616)
T PRK05183 17 QRRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95 (616)
T ss_pred cCCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh-
Confidence 34579999999999999997 79999999988899999999999999999999999999999876
Q ss_pred hhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH
Q 009246 70 SVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD 149 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 149 (539)
++...+.+||.+...+++.+.+.+. ...++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 170 (616)
T PRK05183 96 -IQQRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKD 170 (616)
T ss_pred -hhhhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 3445567899988877777666542 23789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHH
Q 009246 150 AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMV 229 (539)
Q Consensus 150 Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 229 (539)
||+.|||+++++++||+|||++|+.... .++++||||+||||||+|++++.++.++++++.|+.++||.+||+.|+
T Consensus 171 Aa~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 171 AARLAGLNVLRLLNEPTAAAIAYGLDSG----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HHHHcCCCeEEEecchHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 9999999999999999999999987654 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009246 230 NHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (539)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~ 309 (539)
+|+.++++ .+...+++.+.+|+.+||++|+.||.+.++.+.++.+ . ..|||++|+++++|+++++.++++
T Consensus 247 ~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~-~-----~~itr~efe~l~~~l~~~~~~~i~ 316 (616)
T PRK05183 247 DWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW-Q-----GEITREQFNALIAPLVKRTLLACR 316 (616)
T ss_pred HHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC-C-----CeEcHHHHHHHHHHHHHHHHHHHH
Confidence 99998764 3334578889999999999999999999988888532 2 249999999999999999999999
Q ss_pred HHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeeccc
Q 009246 310 KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTP 389 (539)
Q Consensus 310 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~ 389 (539)
++|+++++.+.+|+.|+||||+||+|+|++.|+++|+ ..+..+.||++|||+|||++|+.+++. ....++.+.|++|
T Consensus 317 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p 393 (616)
T PRK05183 317 RALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIP 393 (616)
T ss_pred HHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeecc
Confidence 9999999999999999999999999999999999995 456678899999999999999999853 3346788999999
Q ss_pred cccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEE
Q 009246 390 LSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCF 469 (539)
Q Consensus 390 ~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~ 469 (539)
++||+++.++.+.+|||||+++|++++..|++..|+|+.+.+.||||++..+.+|..||++.|.|+|+.++|.++|+|+|
T Consensus 394 ~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f 473 (616)
T PRK05183 394 LSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTF 473 (616)
T ss_pred ccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCC
Q 009246 470 DIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKT 535 (539)
Q Consensus 470 ~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (539)
++|.||+|+|++.+..+|++..+.+.+.. .++.+.++++.+...++..+++..++....+|++|+
T Consensus 474 ~~d~~Gil~V~a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 538 (616)
T PRK05183 474 QVDADGLLSVTAMEKSTGVEASIQVKPSY-GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAER 538 (616)
T ss_pred EECCCCeEEEEEEEcCCCcEEEecccccc-cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999886544 477778888888888777777777776666666654
No 13
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.3e-88 Score=735.17 Aligned_cols=513 Identities=54% Similarity=0.843 Sum_probs=472.1
Q ss_pred CEEEEEcCccceeeeEE---------------ecceEEEecCC-ceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhh
Q 009246 8 PAIGIDLGTTYSCVGVW---------------TTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (539)
.+||||||||||++|++ .+||+|+|.++ ++++|..|+.+...+|.++++++||+||+++. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 37999999999999998 79999999855 89999999999999999999999999999883 46
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009246 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 151 (539)
+...+.+||+ +.++++...+.+ . ++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6677889999 445566555554 2 4689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 009246 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (539)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 231 (539)
+.|||+++++++||+|||++|+.... ..+.++||||+||||||+|++++.++.++++++.|+..+||.+||+.|++|
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS---KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc---CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHH
Confidence 99999999999999999999987653 257889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHHH
Q 009246 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCMEP 307 (539)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~----g~d~~~~itr~~~e~~~~~~~~~i~~~ 307 (539)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +.++.+.|||++|+++++|+++++.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~ 310 (595)
T TIGR02350 231 LADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEP 310 (595)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888999999999999999999999999988876643 357889999999999999999999999
Q ss_pred HHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeec
Q 009246 308 VEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDV 387 (539)
Q Consensus 308 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~ 387 (539)
++++|+++++++.+|+.|+||||+||+|+|++.|++.|+ .++....||++|||+|||++|+.+++. .+++.+.|+
T Consensus 311 i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~ 385 (595)
T TIGR02350 311 VRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDV 385 (595)
T ss_pred HHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeec
Confidence 999999999999999999999999999999999999995 677888999999999999999999853 567889999
Q ss_pred cccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEE
Q 009246 388 TPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITV 467 (539)
Q Consensus 388 ~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v 467 (539)
+|++||++..++.+.+||++|+++|++++++|++..|+|+.+.|.+|||++..+.+|..||++.|.++|+.++|.++|++
T Consensus 386 ~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 465 (595)
T TIGR02350 386 TPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEV 465 (595)
T ss_pred ccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 468 CFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 468 ~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
+|++|.||+|+|++.+..+|++..+.++.. ..++++.++++.+....+..+++..+++..+||+||++
T Consensus 466 ~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~ 533 (595)
T TIGR02350 466 TFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSL 533 (595)
T ss_pred EEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999998888754 35777888899888888889999999999999999874
No 14
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=2.6e-88 Score=732.42 Aligned_cols=516 Identities=53% Similarity=0.814 Sum_probs=475.2
Q ss_pred CCEEEEEcCccceeeeEE---------------ecceEEEecC-CceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChh
Q 009246 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDAS 70 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 70 (539)
..+||||||||||++|++ .+||+|+|.+ +++++|..|+++...+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 368999999999999998 7999999975 5799999999999999999999999999999865
Q ss_pred hhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH
Q 009246 71 VQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA 150 (539)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 150 (539)
++...+.+||++..++++...+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~--~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECP--ALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4556677999998877776555543 34467999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||+.|++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 999999999999999999999987654 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccC----CeeeEEEEcHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMDLFRKCME 306 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~----g~d~~~~itr~~~e~~~~~~~~~i~~ 306 (539)
|+.++|+++++.++..+++.+.+|+.+||++|+.||...++.+.++.+.. +.++...|||++|++++.++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999998888888999999999999999999999999888886543 25788899999999999999999999
Q ss_pred HHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeee
Q 009246 307 PVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLD 386 (539)
Q Consensus 307 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d 386 (539)
+|+++|+++++.+.+|+.|+|+||+||+|.|++.|++.|+ ..+....||++|||+|||++|+.+++ ..+++.+.|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d 388 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLD 388 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeeee
Confidence 9999999999999999999999999999999999999994 66778899999999999999999885 356788999
Q ss_pred ccccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEE
Q 009246 387 VTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQIT 466 (539)
Q Consensus 387 ~~~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~ 466 (539)
++|++||++..++.+.+|||+|+++|++++..|++..++|+.+.+.+|||++..+.+|..||+|.|.++|+.++|.++|+
T Consensus 389 ~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~ 468 (621)
T CHL00094 389 VTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIE 468 (621)
T ss_pred eeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEEEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 467 VCFDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 467 v~~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
++|++|.||+|+|++.+..||++..+.+... ..++++.++++.+....+..+++..+++...+|+||+.
T Consensus 469 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~ 537 (621)
T CHL00094 469 VTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESL 537 (621)
T ss_pred EEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHH
Confidence 9999999999999999999999998888643 45888899999999999999999999999999999863
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.6e-85 Score=700.89 Aligned_cols=483 Identities=35% Similarity=0.537 Sum_probs=417.7
Q ss_pred CCEEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhh
Q 009246 7 GPAIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (539)
..+||||||||||++|++ .+||+|+|.++++++|..| +++++||++|+.+++...
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 358999999999999998 7999999998889999987 789999999999876321
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 009246 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAG 151 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 151 (539)
............... ...+.+.+ .++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||
T Consensus 89 ~~~~~~~~k~~~~~~--~~~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 89 TPALFSLVKDYLDVN--SSELKLNF--ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred chhhHhhhhheeecC--CCeeEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 111000000111111 12233333 34689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 009246 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (539)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 231 (539)
+.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+..+||++||.+|.+|
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~ 240 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKN----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQY 240 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccC----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHH
Confidence 99999999999999999999987653 45689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 009246 232 FVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKC 311 (539)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~ 311 (539)
+.++|.. ..+.. .+..||++|+.||.+..... ..+.|||++|+++++|+++++..+++++
T Consensus 241 ~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 241 LCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred HHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988742 12222 23469999999998765321 1578999999999999999999999999
Q ss_pred HHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeeccccc
Q 009246 312 LRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLS 391 (539)
Q Consensus 312 l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~~s 391 (539)
|++++ ..+|+.|+||||+|++|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ..++.+.|++|+|
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~s 373 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLS 373 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccc
Confidence 99998 568999999999999999999999999 4667788999999999999999998752 3468899999999
Q ss_pred cceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEEe
Q 009246 392 LGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDI 471 (539)
Q Consensus 392 ~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~ 471 (539)
+|+++.++.+.+||+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||+|.|.|+|+.++|.++|+|+|++
T Consensus 374 lgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~i 453 (595)
T PRK01433 374 LGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAI 453 (595)
T ss_pred eEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred cCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCC
Q 009246 472 DANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKT 535 (539)
Q Consensus 472 d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (539)
|.||+|+|++.+..||++..+.+.... .+++++++++.+....+..+++..++..+++|++|.
T Consensus 454 d~~Gil~V~a~~~~t~~~~~~~i~~~~-~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 516 (595)
T PRK01433 454 DADGILSVSAYEKISNTSHAIEVKPNH-GIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEA 516 (595)
T ss_pred CCCCcEEEEEEEcCCCcEEEEEecCCC-CCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999987544 477888889988888888888777777766665554
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.4e-85 Score=718.50 Aligned_cols=521 Identities=48% Similarity=0.802 Sum_probs=478.1
Q ss_pred EEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhc
Q 009246 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQG 73 (539)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 73 (539)
|||||||||||+||++ .+||+|+|.++++++|..|.....++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 6999999999999998 7999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 009246 74 DMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVI 153 (539)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 153 (539)
+.+.+||++..++++...+.+.+.+....++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHH
Q 009246 154 AGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFV 233 (539)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 233 (539)
|||+++++++||+|||++|+..+.. .++++||||+||||+|+|++++.++.+++++..++..+||++||++|++++.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccc
Confidence 9999999999999999999877663 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCC--CceEEEEEecccC-CeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q 009246 234 QEFKRKNKKDISGNPRALRRLRTACERAKRTLSS--TAQTTIEIDSLYE-GIDFYSTITRARFEELNMDLFRKCMEPVEK 310 (539)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~--~~~~~i~i~~~~~-g~d~~~~itr~~~e~~~~~~~~~i~~~i~~ 310 (539)
++++.+++.+...+++.+.+|+.+||++|+.||. +....+.++.+.+ |.++.+.|||++|+++++|+++++..+|++
T Consensus 238 ~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 317 (602)
T PF00012_consen 238 EKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEK 317 (602)
T ss_dssp HHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 9999998888888999999999999999999999 6777788887777 899999999999999999999999999999
Q ss_pred HHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeecccc
Q 009246 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 390 (539)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 390 (539)
+|++++++..+|+.|+|+||+|++|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++ .++.+++.+.|++|+
T Consensus 318 ~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~ 394 (602)
T PF00012_consen 318 ALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPF 394 (602)
T ss_dssp HHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESS
T ss_pred ccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--ccccccccccccccc
Confidence 999999999999999999999999999999999996 77888899999999999999999984 355678889999999
Q ss_pred ccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEE
Q 009246 391 SLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFD 470 (539)
Q Consensus 391 s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~ 470 (539)
+||++..++.+..++++|+++|.+++..|.+..++|+.+.+.||+|++....+|..||++.|.++++.++|.++|+++|+
T Consensus 395 ~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ 474 (602)
T PF00012_consen 395 SIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFE 474 (602)
T ss_dssp EEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999889999999
Q ss_pred ecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 471 IDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 471 ~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
+|.+|+|+|++.+..++.+..+++..... .+....+++.....+...+++..+++.+.+|+||++
T Consensus 475 ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~ 539 (602)
T PF00012_consen 475 LDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESY 539 (602)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHH
Confidence 99999999999999999998888866655 666677778888888888889999998999988875
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-84 Score=688.80 Aligned_cols=498 Identities=56% Similarity=0.823 Sum_probs=466.3
Q ss_pred CCCEEEEEcCccceeeeEE----------------ecceEEEecCCc-eEecHHHHhhHhhCCCchhhhhhHhhCCCCCC
Q 009246 6 EGPAIGIDLGTTYSCVGVW----------------TTPSYVGFTDTE-RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSD 68 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~----------------~~Ps~v~~~~~~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 68 (539)
...+||||||||||+||++ .+||+|+|..++ +++|..|++++..+|.++++.+||++|+.-.
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 4578999999999999998 799999999765 9999999999999999999999999998611
Q ss_pred hhhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009246 69 ASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (539)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (539)
...+.+.+. ++.++|+++++++|.+|++.|+.+++..+.++|||||+||++.||++++
T Consensus 83 --------------------~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 011122222 2679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 009246 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (539)
Q Consensus 149 ~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 228 (539)
+|++.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||.+|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l 216 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNAL 216 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHH
Confidence 99999999999999999999999998876 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHH
Q 009246 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPV 308 (539)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i 308 (539)
.+|+..+|+.+++.++..++..+.+|+.+||++|+.||...++.+.++....+.++...|||++||+++.+++.++...+
T Consensus 217 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~ 296 (579)
T COG0443 217 IDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPV 296 (579)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877777778889999999999999999999999
Q ss_pred HHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeecc
Q 009246 309 EKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVT 388 (539)
Q Consensus 309 ~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~ 388 (539)
..++.+++++..+|+.|+||||++|+|.|++.+++.|+ .++...+||+++||.|||++|+.+++. .+++++.|++
T Consensus 297 ~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~ 371 (579)
T COG0443 297 EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVI 371 (579)
T ss_pred HHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeee
Confidence 99999999999999999999999999999999999995 778899999999999999999999864 2278899999
Q ss_pred ccccceeeecCeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEE
Q 009246 389 PLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVC 468 (539)
Q Consensus 389 ~~s~gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~ 468 (539)
|+++|++..++.+..++++|+.+|.++...|++..|+|..+.+.++||++....+|..+|.|.+.++|+.++|.++|+++
T Consensus 372 plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~ 451 (579)
T COG0443 372 PLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVT 451 (579)
T ss_pred eeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCeeEEEEEEEcCCCceeeEEcCCChhhhHHHHHHHHhcCCcccHHHHHhhhhhcCCCCCCCCC
Q 009246 469 FDIDANGILNVSAEDKTTAKRTRSQSPTTRVDCQRMKLRRWFKRPRSTRLKMRSTRRRSRPRMPWKTM 536 (539)
Q Consensus 469 ~~~d~~g~l~v~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (539)
|.+|.||+++|++.+..+|++..+++..... ++...+++|.+.+..+.+.++..++....||+.+.+
T Consensus 452 f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~ 518 (579)
T COG0443 452 FDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESL 518 (579)
T ss_pred eccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999998 999999999999999999998888888888876654
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-71 Score=562.21 Aligned_cols=519 Identities=34% Similarity=0.547 Sum_probs=461.5
Q ss_pred EEEEEcCccceeeeEE---------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhc
Q 009246 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQG 73 (539)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 73 (539)
+||||||..++.+|++ .+|++|+|...+|++|..|..+...++.+++..+||++|+.|+||.+|.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 8999999999999988 7999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 009246 74 DMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVI 153 (539)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 153 (539)
+.+.+|+++...+|+...+.+.|.|+.+.+++++|++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||..
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeechhHHHHHhcccccccC---CCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 154 AGLNVMRIINEPTAAAIAYGLDKKAT---SVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 154 aGl~~~~li~Ep~Aaa~~~~~~~~~~---~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
|||+++++++|-+|+|++|+..+... ..++.+++++|+|.+++.+|++.+..|.+.++++.++..+||++||+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 99999999999999999999987764 245678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEK 310 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~ 310 (539)
|+.++|+.+++++...+++++.+|+.+||+.|+.||.+....++|++++++.|.+..|+|++||+++.|+++++..++.+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCCCccccceeeeecccc
Q 009246 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPL 390 (539)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~~~~~~~~~~~d~~~~ 390 (539)
+|++++++..+|+.|.+|||+||+|.|.+.|.++| ++++..++|.++|||+|||+++|++| +.++++++.++|+.|+
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~py 399 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccce
Confidence 99999999999999999999999999999999999 78899999999999999999999999 8889999999999999
Q ss_pred ccceeee----c-CeEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecC-cccccCCcceeEEEEeCCCCCCCC-cC
Q 009246 391 SLGLETA----G-GVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGE-RTRTRDNNLLGKFELSGIPPAPRG-VP 463 (539)
Q Consensus 391 s~gi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~-~~~~~~~~~ig~~~i~~i~~~~~~-~~ 463 (539)
+|.+... + +....+||+|.++|..+..+|... ..+.+.++++. ...+.....|+++++.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk----~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRK----GPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEec----CceEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 9987743 2 455789999999999998888753 35778877776 344445578999999988765553 44
Q ss_pred EEEEEEEecCCeeEEEEEEEcCCCceeeE------------------------------E--c-CCChhhhHHHHHHHHh
Q 009246 464 QITVCFDIDANGILNVSAEDKTTAKRTRS------------------------------Q--S-PTTRVDCQRMKLRRWF 510 (539)
Q Consensus 464 ~i~v~~~~d~~g~l~v~~~~~~~g~~~~i------------------------------~--~-~~~~~~~~~~~~~~~~ 510 (539)
++++..+++.+|+..|...-.-...+.+- . + .+....+...++....
T Consensus 476 kVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYI 555 (727)
T ss_pred ceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHH
Confidence 79999999999998887543322211110 0 0 0111123345555666
Q ss_pred cCCcccHHHHHhhhhhcCCCCCCC
Q 009246 511 KRPRSTRLKMRSTRRRSRPRMPWK 534 (539)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~ 534 (539)
+.+.++..+++...++-..+|+||
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNale 579 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALE 579 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHH
Confidence 666667777777777777777766
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-63 Score=502.19 Aligned_cols=468 Identities=33% Similarity=0.533 Sum_probs=410.7
Q ss_pred CCCEEEEEcCccceeeeEE----------------ecceEEEecCCceEecHHHHhhHhhCCCchhhhhhHhhCCCCCCh
Q 009246 6 EGPAIGIDLGTTYSCVGVW----------------TTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDA 69 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~----------------~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 69 (539)
...+++||+|+.++++++. ++|++|+|.+++|++|..|.....++|..++..++.++|+...++
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 4568999999999999988 899999999999999999999999999999999999999999999
Q ss_pred hhhccccccCe-EEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHH
Q 009246 70 SVQGDMKLWPF-KVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATK 148 (539)
Q Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 148 (539)
.++.+.+.+|+ .++.++ .+..+.+.+++ ...|+++++++|+|.+.+..|+.+...++.++|||||.+|++.||+++.
T Consensus 101 ~v~ly~~~~p~~e~v~d~-~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDP-QRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred HHHHHHhcCCceeecccC-ccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 99988888885 555554 66777776665 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeEeechhHHHHHhccccccc-CCCCCeEEEEEEeCCceEEEEEEEEeC----------CEEEEEEecCCC
Q 009246 149 DAGVIAGLNVMRIINEPTAAAIAYGLDKKA-TSVGEKNVLIFDLGGGTFDVSLLTIEE----------GIFEVKATAGDT 217 (539)
Q Consensus 149 ~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~~~vlV~D~GggT~Dvsv~~~~~----------~~~~v~~~~~~~ 217 (539)
+||++||+++++||++-+|||+.|+..+.. .....++++|||+|+|++.++++.+.- ..+++++.+.+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 999999999999999999999999987643 345688999999999999999998741 478999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHH
Q 009246 218 HLGGEDFDNRMVNHFVQEFKRKNK--KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEE 295 (539)
Q Consensus 218 ~lGG~~~d~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~ 295 (539)
.|||..|..+|.+++.+.|.+.++ .++..+|+++.+|.++|+++|..||.+..+.+.|+++.+++||...|||++||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 999999999999999999998887 467889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhCCC
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSGEG 375 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~~~ 375 (539)
+|.++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.+..+..++...+|.|+|++.||+++||.|+ .
T Consensus 339 lc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--k 416 (902)
T KOG0104|consen 339 LCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--K 416 (902)
T ss_pred HHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--c
Confidence 99999999999999999999999999999999999999999999999999888899999999999999999999999 6
Q ss_pred CccccceeeeeccccccceeeecC--------eEEEEEeCCCCcCceeEEEeeeccCCCCcEEEEEEecCcccccCCcce
Q 009246 376 NEKVQDLLLLDVTPLSLGLETAGG--------VMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLL 447 (539)
Q Consensus 376 ~~~~~~~~~~d~~~~s~gi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~i 447 (539)
.++++++.+.|.+.++|-++..+. ....+|+++.++|.++..+|+...|+ +.+.+-.|.-. ..+
T Consensus 417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl 488 (902)
T KOG0104|consen 417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNL 488 (902)
T ss_pred cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCc
Confidence 788999999999988887765432 23468999999999988787766554 22222222110 224
Q ss_pred eEEEEeCCCCCC----C---CcCEEEEEEEecCCeeEEEEEEEcC
Q 009246 448 GKFELSGIPPAP----R---GVPQITVCFDIDANGILNVSAEDKT 485 (539)
Q Consensus 448 g~~~i~~i~~~~----~---~~~~i~v~~~~d~~g~l~v~~~~~~ 485 (539)
-.+++.|+..+- . ...-|++.|.+|.+|++.|+..+..
T Consensus 489 ~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv 533 (902)
T KOG0104|consen 489 TTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVV 533 (902)
T ss_pred cEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEE
Confidence 477787665321 1 1234899999999999999877653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=2.7e-54 Score=445.73 Aligned_cols=322 Identities=26% Similarity=0.365 Sum_probs=271.5
Q ss_pred EEEEEcCccceeeeEE---------------ecceEEEec----------------------------------------
Q 009246 9 AIGIDLGTTYSCVGVW---------------TTPSYVGFT---------------------------------------- 33 (539)
Q Consensus 9 vvGID~GTt~s~va~~---------------~~Ps~v~~~---------------------------------------- 33 (539)
++|||||||||++|++ .+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5999999999999998 799999994
Q ss_pred -CCceEecHHHHhhHhhCCCch--hhhhhHhhCCCCCChhhhccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHH
Q 009246 34 -DTERLIGDAAKNQVAMNPTNT--VFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISS 110 (539)
Q Consensus 34 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~ 110 (539)
++..++|..|+++...+|+++ +.++|++||...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 345689999999999999988 679999999642110 01234899999
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeEeechhHHHHHhcccccccCCCC
Q 009246 111 MVLIKMREIAEAYLGSTIKNAVVTVPAYFN-----DSQRQA---TKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 182 (539)
Q Consensus 111 ~~L~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 182 (539)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----~ 207 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----E 207 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----C
Confidence 999999999999999999999999999998 778766 6999999999999999999999999986433 5
Q ss_pred CeEEEEEEeCCceEEEEEEEEeCC-------EEEEEEecCCCCCchHHHHHHHH-HHHHHHHHhh----ccCCC------
Q 009246 183 EKNVLIFDLGGGTFDVSLLTIEEG-------IFEVKATAGDTHLGGEDFDNRMV-NHFVQEFKRK----NKKDI------ 244 (539)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~~~~~-------~~~v~~~~~~~~lGG~~~d~~l~-~~l~~~~~~~----~~~~~------ 244 (539)
+..+||||+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|... .+.++
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~ 286 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFW 286 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhh
Confidence 788999999999999999998654 367899988 5899999999998 6777776421 11100
Q ss_pred -----------------------------CCCHHHH------------HHHHHHHHHHhhhcCCCceEEEEEecccCCee
Q 009246 245 -----------------------------SGNPRAL------------RRLRTACERAKRTLSSTAQTTIEIDSLYEGID 283 (539)
Q Consensus 245 -----------------------------~~~~~~~------------~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d 283 (539)
..+++.+ .+|+.+||++|+.||...++.+.++.+. .+
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~ 364 (450)
T PRK11678 287 NAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DG 364 (450)
T ss_pred hhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CC
Confidence 0123222 3678899999999999999999988654 35
Q ss_pred eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhH
Q 009246 284 FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYG 363 (539)
Q Consensus 284 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~G 363 (539)
+...|||++|+++++++++++.++++++|+++++. ++.|+||||+|++|.|++.|++.||+.++. ..+|.++||.|
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~G 440 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAG 440 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHH
Confidence 67899999999999999999999999999999875 478999999999999999999999776554 56999999999
Q ss_pred HHHHHHHH
Q 009246 364 AAVQAAIL 371 (539)
Q Consensus 364 Aa~~a~~~ 371 (539)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99998753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.2e-40 Score=333.61 Aligned_cols=301 Identities=23% Similarity=0.350 Sum_probs=236.1
Q ss_pred EEEEcCccceeeeEE------ecceEEEecCC--c-eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhccccccCe
Q 009246 10 IGIDLGTTYSCVGVW------TTPSYVGFTDT--E-RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPF 80 (539)
Q Consensus 10 vGID~GTt~s~va~~------~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~~ 80 (539)
+||||||++|+++.. ..||+|++... . ..+|++|++...+.|.+.... + |+
T Consensus 6 ~gIDlGt~~~~i~~~~~~~v~~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~--------------pi 65 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKGIVLNEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------R--------------PL 65 (336)
T ss_pred eEEEcccccEEEEECCCCEEEccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------c--------------cC
Confidence 899999999999876 78999999953 2 479999988766656554320 0 11
Q ss_pred EEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeE
Q 009246 81 KVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMR 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~ 160 (539)
. ...+...+++..+++++.+.+..........+|||||++|+..||+++++|++.||++.+.
T Consensus 66 -----~-------------~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag~~~~~ 127 (336)
T PRK13928 66 -----R-------------DGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAGAKKVY 127 (336)
T ss_pred -----C-------------CCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCceE
Confidence 0 0122344566777777765443322223337999999999999999999999999999999
Q ss_pred eechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhc
Q 009246 161 IINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKN 240 (539)
Q Consensus 161 li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~ 240 (539)
+++||+|||++|+.... .+..++|||+||||||+++++... ....++..+||++||+.|.+++.++|+...
T Consensus 128 li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~l~~~~~~~~ 198 (336)
T PRK13928 128 LIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRYIRKKYKLLI 198 (336)
T ss_pred ecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHHHHHHhchhc
Confidence 99999999999987543 456789999999999999999754 334567899999999999999987764211
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eEEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 241 KKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRD 314 (539)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~i~i~--~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 314 (539)
. ...||++|+.++... ...+.+. .+..+.+..+.|++++|++++.+.++++.+.+++.|+.
T Consensus 199 ~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~ 265 (336)
T PRK13928 199 G-------------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLER 265 (336)
T ss_pred C-------------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 257999999987542 1233332 23345667789999999999999999999999999999
Q ss_pred cC--CCcCCcc-eEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHH
Q 009246 315 AK--MDKSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 315 ~~--~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
++ +....++ .|+|+||+|++|.|++.|++.| +.++....||+++||+|||+++..+
T Consensus 266 ~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 266 TPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred CCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 86 4455677 7999999999999999999999 5677788899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.8e-39 Score=326.99 Aligned_cols=299 Identities=25% Similarity=0.355 Sum_probs=240.3
Q ss_pred EEEEEcCccceeeeEE------ecceEEEecCCc---eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhccccccC
Q 009246 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (539)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (539)
.+||||||+||++..- ..||+|++++.. ..+|.+|+.+..+.|.++... +-+.
T Consensus 6 ~~giDlGt~~~~i~~~~~~~~~~~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~---------------- 67 (335)
T PRK13929 6 EIGIDLGTANILVYSKNKGIILNEPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMK---------------- 67 (335)
T ss_pred eEEEEcccccEEEEECCCcEEecCCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCC----------------
Confidence 5999999999987532 689999998543 579999999988888876542 1110
Q ss_pred eEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCc
Q 009246 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIK--NAVVTVPAYFNDSQRQATKDAGVIAGLN 157 (539)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~~Aa~~aGl~ 157 (539)
++ .+..-++++.+|++++..++..++..+. .+|||||++|+..||+++.+|++.||++
T Consensus 68 -------~G-------------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~~ag~~ 127 (335)
T PRK13929 68 -------DG-------------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAK 127 (335)
T ss_pred -------CC-------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 00 1122378899999999988887776554 7999999999999999999999999999
Q ss_pred eeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 009246 158 VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 237 (539)
Q Consensus 158 ~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~ 237 (539)
.+.+++||+|||++|+.... .+..++|+|+||||+|++++...+ ....++..+||++||+.|.+++.+.+.
T Consensus 128 ~~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~l~~~l~~~~~ 198 (335)
T PRK13929 128 NVHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIVSFVRKKYN 198 (335)
T ss_pred eeEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999976543 456799999999999999998754 234566789999999999999987653
Q ss_pred hhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eEEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 009246 238 RKNKKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKC 311 (539)
Q Consensus 238 ~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~i~i~--~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~ 311 (539)
... . ...||++|+.++... ...+.+. ++..+.+..+.+++++|++++.+++.++.+.|.+.
T Consensus 199 ----~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~ 265 (335)
T PRK13929 199 ----LLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRAT 265 (335)
T ss_pred ----cCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 257999999998732 2223332 23345567889999999999999999999999999
Q ss_pred HHHcCCC--cCCcc-eEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHH
Q 009246 312 LRDAKMD--KSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 312 l~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
|++++.. ...++ .|+|+||+|++|.++++|++.| +.++....||+++||+||+..-
T Consensus 266 L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 266 LEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 9998643 35577 6999999999999999999999 6777778899999999999873
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.9e-37 Score=313.08 Aligned_cols=300 Identities=25% Similarity=0.363 Sum_probs=223.8
Q ss_pred EEEEcCccceeeeEE------ecceEEEecCC-----c--eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhcccc
Q 009246 10 IGIDLGTTYSCVGVW------TTPSYVGFTDT-----E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMK 76 (539)
Q Consensus 10 vGID~GTt~s~va~~------~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~ 76 (539)
+||||||+||.++.. ..||+|+|.++ + .++|++|+....+.|.+.. .++-+..
T Consensus 5 ~giDlGt~~s~i~~~~~~~~~~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~~------------ 70 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMKD------------ 70 (333)
T ss_pred eEEecCcceEEEEECCCCEEEecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCCC------------
Confidence 999999999999875 68999999843 3 6799999887655555443 1221210
Q ss_pred ccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 009246 77 LWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGL 156 (539)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl 156 (539)
+. +.--+.+..+++++........+.....+|+|||++|+..||+++++|++.+|+
T Consensus 71 -----------------------G~-i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~~~ag~ 126 (333)
T TIGR00904 71 -----------------------GV-IADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESALSAGA 126 (333)
T ss_pred -----------------------CE-EEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 00 111123334444444333221121122799999999999999999999999999
Q ss_pred ceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 009246 157 NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 236 (539)
Q Consensus 157 ~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 236 (539)
+.+.+++||+|||++|+.... .+..++|+|+||||||+++++..+ ....++..+||++||+.|.+++.+++
T Consensus 127 ~~~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~~l~~~l~~~~ 197 (333)
T TIGR00904 127 REVYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDEAIINYIRRTY 197 (333)
T ss_pred CeEEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHHHHHHHHHHHh
Confidence 999999999999999976443 456789999999999999998765 33456678999999999999998765
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCce-----EEEEEec--ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHH
Q 009246 237 KRKNKKDISGNPRALRRLRTACERAKRTLSSTAQ-----TTIEIDS--LYEGIDFYSTITRARFEELNMDLFRKCMEPVE 309 (539)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~-----~~i~i~~--~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~ 309 (539)
. ... . +..||++|+.++.... ..+.+.. ...+......|+++++.+++.+.++++.+.+.
T Consensus 198 ~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 264 (333)
T TIGR00904 198 N----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVK 264 (333)
T ss_pred c----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 3 111 1 3578999999876322 1222211 11233445789999999999999999999999
Q ss_pred HHHHHcCCCc-CCc-c-eEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHH
Q 009246 310 KCLRDAKMDK-STV-H-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 310 ~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 370 (539)
+.|+.++... .++ + .|+|+||+|++|.++++|++.| +.++....||+++||.||++++..
T Consensus 265 ~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 265 RTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 9999986432 233 3 6999999999999999999999 677888889999999999998653
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.8e-37 Score=313.99 Aligned_cols=301 Identities=24% Similarity=0.367 Sum_probs=226.9
Q ss_pred CEEEEEcCccceeeeEE------ecceEEEecCC-c--eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhcccccc
Q 009246 8 PAIGIDLGTTYSCVGVW------TTPSYVGFTDT-E--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLW 78 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~------~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~ 78 (539)
..|||||||++|+++.. .+||+|++... + .++|++|.......|.++... +
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~~~~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~------------------ 65 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGIVLNEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--R------------------ 65 (334)
T ss_pred ceeEEEcCcceEEEEECCCcEEEecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--e------------------
Confidence 35999999999998654 69999999754 3 489999998876666554321 1
Q ss_pred CeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009246 79 PFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~ 158 (539)
|+ .+| ..... +.+..+++++.......... ...+|+|+|++|+..||+++++|++.||++.
T Consensus 66 pi-----~~G------------~i~d~-~~~~~ll~~~~~~~~~~~~~-~~~~vi~vP~~~~~~~r~~~~~a~~~ag~~~ 126 (334)
T PRK13927 66 PM-----KDG------------VIADF-DVTEKMLKYFIKKVHKNFRP-SPRVVICVPSGITEVERRAVRESALGAGARE 126 (334)
T ss_pred cC-----CCC------------eecCH-HHHHHHHHHHHHHHhhccCC-CCcEEEEeCCCCCHHHHHHHHHHHHHcCCCe
Confidence 11 000 00011 22344444444333222221 2379999999999999999999999999999
Q ss_pred eEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHh
Q 009246 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 238 (539)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 238 (539)
+.+++||+|||++|+.... .+..++|+|+||||||+++++..+ ....+...+||++||+.|.+++.+++..
T Consensus 127 ~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l~~~l~~~~~~ 197 (334)
T PRK13927 127 VYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAIINYVRRNYNL 197 (334)
T ss_pred eccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHHHHHHHHHhCc
Confidence 9999999999999987543 456689999999999999998765 2344567899999999999999876531
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhcCCCce----EEEEE--ecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 239 KNKKDISGNPRALRRLRTACERAKRTLSSTAQ----TTIEI--DSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCL 312 (539)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~----~~i~i--~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l 312 (539)
.. . ...+|++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.++++.+.|.++|
T Consensus 198 ----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l 264 (334)
T PRK13927 198 ----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVAL 264 (334)
T ss_pred ----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 2468999999875432 22333 2334556668899999999999999999999999999
Q ss_pred HHcCCC--cCCcc-eEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHH
Q 009246 313 RDAKMD--KSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 313 ~~~~~~--~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 370 (539)
++++.. ...++ .|+|+||+|++|.++++|++.| +.++....+|+++||+||++++..
T Consensus 265 ~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 265 EQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 998643 22344 5999999999999999999999 567888889999999999999765
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.2e-36 Score=306.35 Aligned_cols=302 Identities=24% Similarity=0.334 Sum_probs=229.8
Q ss_pred EEEEEcCccceeeeEE------ecceEEEecCC---ceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhccccccC
Q 009246 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDT---ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (539)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (539)
.+||||||++|+++++ .+||+|++.+. ..++|++|++.....|.+... + +|
T Consensus 10 ~vgiDlGt~~t~i~~~~~~~~~~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~------------------~p 69 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKGIVLNEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I------------------RP 69 (335)
T ss_pred ceEEEcCCCcEEEEECCCCEEEecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e------------------ec
Confidence 4999999999999986 68999999752 358999998776555543211 1 11
Q ss_pred eEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009246 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~ 159 (539)
+ .++ .+..-+.+..+++++.+.+..........+|+|+|++|+..+|+++.+|++.+|++.+
T Consensus 70 i-----~~G-------------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~g~~~~ 131 (335)
T PRK13930 70 L-----KDG-------------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREV 131 (335)
T ss_pred C-----CCC-------------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHcCCCeE
Confidence 1 000 1111244666777776555443344456899999999999999999999999999999
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
.+++||+|||++|+.... .....+|+|+||||||++++.... ....+...+||.+||+.|.+++.+++.
T Consensus 132 ~lv~ep~AAa~a~g~~~~----~~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~l~~~l~~~~~-- 200 (335)
T PRK13930 132 YLIEEPMAAAIGAGLPVT----EPVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIVQYVRRKYN-- 200 (335)
T ss_pred EecccHHHHHHhcCCCcC----CCCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHHHHHHHHHHhC--
Confidence 999999999999876543 344579999999999999998654 223566899999999999999987653
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhcCCCce----EEEEEe--cccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 240 NKKDISGNPRALRRLRTACERAKRTLSSTAQ----TTIEID--SLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~----~~i~i~--~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 313 (539)
... + ...||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+.+.++|+
T Consensus 201 --~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~ 269 (335)
T PRK13930 201 --LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLE 269 (335)
T ss_pred --CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 2578999999876432 223332 2234455678899999999999999999999999999
Q ss_pred HcCCC--cCCcce-EEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHH
Q 009246 314 DAKMD--KSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 314 ~~~~~--~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
.++.. ...++. |+|+||+|++|.++++|++.| +.++....+|+++||+||++++...
T Consensus 270 ~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 270 KTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred hCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 87533 223454 999999999999999999999 5677777899999999999997643
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=7.8e-33 Score=272.10 Aligned_cols=299 Identities=25% Similarity=0.365 Sum_probs=216.8
Q ss_pred EEEEEcCccceeeeEE------ecceEEEecCCc---eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhccccccC
Q 009246 9 AIGIDLGTTYSCVGVW------TTPSYVGFTDTE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWP 79 (539)
Q Consensus 9 vvGID~GTt~s~va~~------~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~~~~ 79 (539)
-+||||||+++.++.- ..||+|+++... ..+|.+|+....+.|.+... .+|
T Consensus 3 ~igIDLGT~~t~i~~~~~Giv~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~--------------------~~P 62 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGIVLNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV--------------------VRP 62 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEEEEEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------------E-S
T ss_pred ceEEecCcccEEEEECCCCEEEecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------------Ecc
Confidence 5899999999998643 789999998642 46999998776666654321 111
Q ss_pred eEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009246 80 FKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~ 159 (539)
.+ +..+.--++...+|+++.+.+.......-..++++||+.-++-+|+++.+|+..+|.+.+
T Consensus 63 l~------------------~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~aGa~~V 124 (326)
T PF06723_consen 63 LK------------------DGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQAGARKV 124 (326)
T ss_dssp EE------------------TTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHTT-SEE
T ss_pred cc------------------CCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 11 011222456777777777766543222334799999999999999999999999999999
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
.+++||.|||+..++.-. .....||+|+||||||++++...+ +........||++||++|.+|+.++|.-.
T Consensus 125 ~li~ep~AaAiGaGl~i~----~~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~~~ir~~y~l~ 195 (326)
T PF06723_consen 125 YLIEEPIAAAIGAGLDIF----EPRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAIIRYIREKYNLL 195 (326)
T ss_dssp EEEEHHHHHHHHTT--TT----SSS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHHHHHHHSEE
T ss_pred EEecchHHHHhcCCCCCC----CCCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHHHHHHHhhCcc
Confidence 999999999999887654 466789999999999999997544 33333468999999999999999988521
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhcCCCc----eEEEEE--ecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 240 NKKDISGNPRALRRLRTACERAKRTLSSTA----QTTIEI--DSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----~~~i~i--~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 313 (539)
. =...||++|+.++... ...+.+ .++..|....+.|+.+++.+++.+.+.++.+.|+++|+
T Consensus 196 I-------------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le 262 (326)
T PF06723_consen 196 I-------------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLE 262 (326)
T ss_dssp ---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-------------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1367999999987642 223444 34567888999999999999999999999999999999
Q ss_pred HcCCCc-CC-c-ceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHH
Q 009246 314 DAKMDK-ST-V-HDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 314 ~~~~~~-~~-i-~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
...-.. .| + +.|+|+||+|+++.+.+.|++.+ +.++....||..+||.||....
T Consensus 263 ~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 263 KTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp TS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred hCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 864221 12 2 46999999999999999999999 7899999999999999998754
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=100.00 E-value=1.2e-31 Score=256.07 Aligned_cols=203 Identities=21% Similarity=0.316 Sum_probs=173.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCC
Q 009246 103 FAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 182 (539)
Q Consensus 103 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 182 (539)
+.--+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 3445788999999999999999999999999999999999999999999999999999999999999988542
Q ss_pred CeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHh
Q 009246 183 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAK 262 (539)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 262 (539)
..+|+|+||||+|+++++. +.+ . ...+..+||++||+.|.+.+. .+ ..+||++|
T Consensus 109 --~~~vvDiGggtt~i~i~~~--G~i--~-~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILKK--GKV--I-YSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYK 162 (239)
T ss_pred --CcEEEEeCCCcEEEEEEEC--CeE--E-EEEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 1499999999999999864 332 2 244678999999998876552 11 26889999
Q ss_pred hhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHH
Q 009246 263 RTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQ 342 (539)
Q Consensus 263 ~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~ 342 (539)
+.++ +.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|.+++.++
T Consensus 163 ~~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHH
Confidence 8754 145677899999999999999999864 3568999999999999999999
Q ss_pred hhhCCccccccCCCchhhHhHHHH
Q 009246 343 DFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 343 ~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
+.| +.++..+.||++++|.|||+
T Consensus 216 ~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHh-CCCcccCCCCCeehhheeec
Confidence 999 67888889999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=3.2e-29 Score=236.46 Aligned_cols=304 Identities=24% Similarity=0.348 Sum_probs=238.2
Q ss_pred CEEEEEcCccceeeeEE------ecceEEEecC--Cc---eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhhcccc
Q 009246 8 PAIGIDLGTTYSCVGVW------TTPSYVGFTD--TE---RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMK 76 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~------~~Ps~v~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~~~~ 76 (539)
..+|||+||.|+.|+.- .-||+|++.. +. ..+|.+|+....+.|.+... -|
T Consensus 7 ~diGIDLGTanTlV~~k~kgIVl~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a--iR---------------- 68 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA--IR---------------- 68 (342)
T ss_pred ccceeeecccceEEEEcCceEEecCceEEEEeecCCCceEEEehHHHHHHhccCCCCceE--Ee----------------
Confidence 47999999999998765 7899999987 22 46999999877777766542 00
Q ss_pred ccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q 009246 77 LWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLG-STIKNAVVTVPAYFNDSQRQATKDAGVIAG 155 (539)
Q Consensus 77 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l~~Aa~~aG 155 (539)
|. . +..+.--++...+|+|+.+....... .....++++||..-++-+|+++++|++.||
T Consensus 69 --Pm-----k-------------dGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aG 128 (342)
T COG1077 69 --PM-----K-------------DGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAG 128 (342)
T ss_pred --ec-----C-------------CcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhcc
Confidence 00 1 11233456677778888776653222 334479999999999999999999999999
Q ss_pred CceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009246 156 LNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (539)
Q Consensus 156 l~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 235 (539)
...+.++.||.|||+..++.-. .+..-+|+|+||||+|++++.+.+ ..+.....+||+.||+++.+|+.++
T Consensus 129 a~~V~lieEp~aAAIGaglpi~----ep~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~De~Ii~yvr~~ 199 (342)
T COG1077 129 AREVYLIEEPMAAAIGAGLPIM----EPTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMDEAIIVYVRKK 199 (342)
T ss_pred CceEEEeccHHHHHhcCCCccc----CCCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhhHHHHHHHHHH
Confidence 9999999999999998876544 344569999999999999999987 5566667899999999999999998
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc--------eEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHH
Q 009246 236 FKRKNKKDISGNPRALRRLRTACERAKRTLSSTA--------QTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEP 307 (539)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~--------~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~ 307 (539)
|+-..+ -..+|++|....... +.++.-.++..|..-.++++..++.+.+++.+++|.+.
T Consensus 200 ~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ivea 266 (342)
T COG1077 200 YNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEA 266 (342)
T ss_pred hCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHH
Confidence 763222 135788888764432 23344445566777889999999999999999999999
Q ss_pred HHHHHHHcC--CCcCCcce-EEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 308 VEKCLRDAK--MDKSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 308 i~~~l~~~~--~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
++..|+... +..+-++. ++|+||+|.+..+.+.|++.. +.++....+|-.+||+|+......+.
T Consensus 267 ir~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 267 IRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 999999864 22333555 999999999999999999987 67888889999999999998876654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.97 E-value=1.3e-28 Score=239.33 Aligned_cols=202 Identities=23% Similarity=0.355 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeE
Q 009246 106 EEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN 185 (539)
Q Consensus 106 ~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~ 185 (539)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||++...+++||.|++.+|... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5667778999999999998988999999999999999999999999999999999999999999887542 1
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhc
Q 009246 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL 265 (539)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~L 265 (539)
.+++|+||||||+++++ ++.+ ...++..+||++||+.|.+++.- -+.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~---~~~~~~~~GG~~it~~Ia~~l~i-------------------~~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKV---VYSADEPTGGTHMSLVLAGAYGI-------------------SFEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeE---EEEecccCchHHHHHHHHHHhCC-------------------CHHHHHHHHhcc
Confidence 49999999999999986 3332 22356799999999999977621 136789999874
Q ss_pred CCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhh
Q 009246 266 SSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF 345 (539)
Q Consensus 266 s~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 345 (539)
+ +++++.+++++.++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 2 357789999999999999999999864 5789999999999999999999999
Q ss_pred CCccccccCCCchhhHhHHHHHH
Q 009246 346 NGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 346 ~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
+.++..+.+|+.++|.|||+|+
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 6778888999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=1.4e-22 Score=207.88 Aligned_cols=194 Identities=22% Similarity=0.294 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCch
Q 009246 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 221 (539)
Q Consensus 142 ~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG 221 (539)
...+.+.+|++.||+++..++.||.|+|++|..... .+..++|+|+||||||++++.. +.+ .......+||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~--g~~---~~~~~i~~GG 228 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTG--GSI---RYTKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEEC--CEE---EEEeeecchH
Confidence 356777889999999999999999999998854332 4567999999999999999963 332 2234568999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCC------ceEEEEEecccCCeeeEEEEcHHHHHH
Q 009246 222 EDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST------AQTTIEIDSLYEGIDFYSTITRARFEE 295 (539)
Q Consensus 222 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~------~~~~i~i~~~~~g~d~~~~itr~~~e~ 295 (539)
++||+.+.+.+. ..+.+||++|+.++.. .+..+.++... .+....+++++|++
T Consensus 229 ~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ 287 (371)
T TIGR01174 229 NHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHH
Confidence 999999876541 1246899999998863 24456665443 34557999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHcCCCcCCcce-EEEeCCCcCcHHHHHHHHhhhCCccccc------------cCCCchhhH
Q 009246 296 LNMDLFRKCMEPVE-KCLRDAKMDKSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELCK------------NINPDEAVA 361 (539)
Q Consensus 296 ~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~aVa 361 (539)
++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|.+++.+++.|+ .++.. ..+|..++|
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHH
Confidence 99999999999997 999998876 56777 9999999999999999999994 32211 126778888
Q ss_pred hHHHHH
Q 009246 362 YGAAVQ 367 (539)
Q Consensus 362 ~GAa~~ 367 (539)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.91 E-value=4e-22 Score=206.72 Aligned_cols=195 Identities=19% Similarity=0.241 Sum_probs=148.4
Q ss_pred HHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHH
Q 009246 145 QATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 224 (539)
Q Consensus 145 ~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 224 (539)
+.+.+|++.|||++..++.||.|+|.+++.... ++..++|+|+||||||++++. ++. +.......+||++|
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~--~G~---l~~~~~i~~GG~~i 239 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYT--GGA---LRHTKVIPYAGNVV 239 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEE--CCE---EEEEeeeechHHHH
Confidence 344679999999999999999999998865432 466799999999999999997 333 33445578999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCC------ceEEEEEecccCCeeeEEEEcHHHHHHHHH
Q 009246 225 DNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST------AQTTIEIDSLYEGIDFYSTITRARFEELNM 298 (539)
Q Consensus 225 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~------~~~~i~i~~~~~g~d~~~~itr~~~e~~~~ 298 (539)
++.|...+.- -...||++|+.+... ....+.++....+. ...+++.+|.+++.
T Consensus 240 t~dIa~~l~i-------------------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii~ 298 (420)
T PRK09472 240 TSDIAYAFGT-------------------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVIE 298 (420)
T ss_pred HHHHHHHhCc-------------------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHHH
Confidence 9999865521 136899999765431 23456665433322 24889999999999
Q ss_pred HHHHHHHHHHHH-------HHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccc------------cCCCchh
Q 009246 299 DLFRKCMEPVEK-------CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK------------NINPDEA 359 (539)
Q Consensus 299 ~~~~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~------------~~~p~~a 359 (539)
+.++++++.+++ .+..++.....++.|+|+||+|++|.|++.+++.|+ .++.. ..+|..+
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHHH
Confidence 977777776654 456667777778999999999999999999999994 33321 2489999
Q ss_pred hHhHHHHHHHH
Q 009246 360 VAYGAAVQAAI 370 (539)
Q Consensus 360 Va~GAa~~a~~ 370 (539)
+|.|.++|+..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.82 E-value=1.7e-18 Score=174.91 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=165.9
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEE
Q 009246 132 VVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVK 211 (539)
Q Consensus 132 VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~ 211 (539)
++|+|..+ -+.+.+|.+.+|+++..++.+|.|+|.+.+.+.. ++-.++++|+||||||+++++-.. +
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~~~G~-----l 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIYKNGA-----L 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEEECCE-----E
Confidence 55665544 5667888899999999999999999998876655 567899999999999999998554 5
Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc------eEEEEEecccCCeeeE
Q 009246 212 ATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA------QTTIEIDSLYEGIDFY 285 (539)
Q Consensus 212 ~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~------~~~i~i~~~~~g~d~~ 285 (539)
.+.+..++||++++..|+.-|.-.+ ..||+.|+.+.... ...+.++...+. ..
T Consensus 226 ~~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~~ 284 (418)
T COG0849 226 RYTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSD--IP 284 (418)
T ss_pred EEEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCc--cc
Confidence 6666789999999999998775443 57899998875543 334666654333 35
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccc--cc----------c
Q 009246 286 STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKEL--CK----------N 353 (539)
Q Consensus 286 ~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v--~~----------~ 353 (539)
..+++.++.+++++-+.+++.++++.|++.+....-...|+|+||++.+|.+.+..++.|+ .++ -. .
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~ 363 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIA 363 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhc
Confidence 6899999999999999999999999999999876678899999999999999999999994 221 11 2
Q ss_pred CCCchhhHhHHHHHHHHH
Q 009246 354 INPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 354 ~~p~~aVa~GAa~~a~~~ 371 (539)
.+|..+.|.|..+|++..
T Consensus 364 ~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 364 RNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cCchhhhhHHHHHHHhhc
Confidence 368999999999998754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.75 E-value=2.9e-17 Score=168.81 Aligned_cols=293 Identities=19% Similarity=0.193 Sum_probs=186.4
Q ss_pred EEEEEcCccceeeeEE-------ecceEEEecC----------CceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhh
Q 009246 9 AIGIDLGTTYSCVGVW-------TTPSYVGFTD----------TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (539)
Q Consensus 9 vvGID~GTt~s~va~~-------~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (539)
.|.||+||+++++++. .+||+++... ...++|++|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~---------------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL---------------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCC----------------------
Confidence 3789999999999987 7889887653 234677666532110
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHH-H
Q 009246 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKD-A 150 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-A 150 (539)
.....+|++ + + .+.--+.+..+++++...... ....-..+++++|..++..+|+.+.+ +
T Consensus 59 -~~~~~~P~~-----~------------G-~i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~l 118 (371)
T cd00012 59 -GLELIYPIE-----H------------G-IVVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIM 118 (371)
T ss_pred -ceEEccccc-----C------------C-EEeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHh
Confidence 000111211 0 0 112223445555555432111 11223578999999999888888866 5
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
++..|++.+.++++|.+|+++++. .+-+|+|+|+++++++.+.- |.. +.......++||+++|+.|.+
T Consensus 119 fe~~~~~~v~~~~~~~~a~~~~g~---------~~~lVVDiG~~~t~i~pv~~--G~~-~~~~~~~~~~GG~~l~~~l~~ 186 (371)
T cd00012 119 FETFNVPALYVAIQAVLSLYASGR---------TTGLVVDSGDGVTHVVPVYD--GYV-LPHAIKRLDLAGRDLTRYLKE 186 (371)
T ss_pred hccCCCCEEEEechHHHHHHhcCC---------CeEEEEECCCCeeEEEEEEC--CEE-chhhheeccccHHHHHHHHHH
Confidence 777999999999999999998764 45699999999999988872 322 222334568999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCce-----------------EEEEEecccCCeeeEEEEcHHHH
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQ-----------------TTIEIDSLYEGIDFYSTITRARF 293 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~-----------------~~i~i~~~~~g~d~~~~itr~~~ 293 (539)
++..+.. ..+. ..-...++..|+.++.-.. .... +.++. .+.++.+.|
T Consensus 187 ~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~---lpd~~--~i~~~~er~ 251 (371)
T cd00012 187 LLRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYE---LPDGR--TIKVGNERF 251 (371)
T ss_pred HHHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEE---CCCCe--EEEEChHHh
Confidence 8865421 0010 1112345666666433211 0111 12233 345555443
Q ss_pred ---HHHHHHH-----HHHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHHHHHhhhC----C-----ccccccC
Q 009246 294 ---EELNMDL-----FRKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQLLQDFFN----G-----KELCKNI 354 (539)
Q Consensus 294 ---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f~----~-----~~v~~~~ 354 (539)
|.++.|. ...+.+.|.++|+.+..+ ..-.+.|+|+||+|++|.+.++|++.+. . ..+....
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 2334432 337788888888876433 2337889999999999999999998773 1 1234456
Q ss_pred CCchhhHhHHHHHHHH
Q 009246 355 NPDEAVAYGAAVQAAI 370 (539)
Q Consensus 355 ~p~~aVa~GAa~~a~~ 370 (539)
+|..++-+||+++|..
T Consensus 332 ~~~~~aw~G~si~as~ 347 (371)
T cd00012 332 ERKYSVWLGGSILASL 347 (371)
T ss_pred CccccEEeCchhhcCc
Confidence 8899999999999864
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=151.03 Aligned_cols=196 Identities=22% Similarity=0.334 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEE
Q 009246 110 SMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIF 189 (539)
Q Consensus 110 ~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~ 189 (539)
-.+.+++++.+++++|.+.+++.-++|..-.....+...+..+.||++++..++||+|||.-..+... .|+
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg---------~VV 145 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG---------GVV 145 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC---------cEE
Confidence 45678999999999999999999999999988888888899999999999999999999976555443 899
Q ss_pred EeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc
Q 009246 190 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA 269 (539)
Q Consensus 190 D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~ 269 (539)
|+||||+-+|+++-.+ .-+..|..-||.++..-|+-+. +.+ +.++|+.|+.-...
T Consensus 146 DiGGGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~y--------gi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGNY--------GIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcCc-----EEEeccCCCCceeEEEEEeccc--------CcC-----------HhHHHHhhhccccc-
Confidence 9999999999998665 4445567899998876665432 111 35677777642111
Q ss_pred eEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcc
Q 009246 270 QTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKE 349 (539)
Q Consensus 270 ~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~ 349 (539)
+|.-..++|+++++.+.+.+.|+..+ +..++|+||+|.-|.+.+..++.| +.+
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~ 253 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQ 253 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccc
Confidence 12223467999999999999988765 667999999999999999999999 778
Q ss_pred ccccCCCchhhHhHHHH
Q 009246 350 LCKNINPDEAVAYGAAV 366 (539)
Q Consensus 350 v~~~~~p~~aVa~GAa~ 366 (539)
+..+..|...--.|-|+
T Consensus 254 v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 254 VHLPQHPLYMTPLGIAS 270 (277)
T ss_pred cccCCCcceechhhhhh
Confidence 88888888777777665
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.71 E-value=1.1e-16 Score=164.63 Aligned_cols=291 Identities=20% Similarity=0.210 Sum_probs=180.5
Q ss_pred CEEEEEcCccceeeeEE-------ecceEEEecCCc---------eEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhh
Q 009246 8 PAIGIDLGTTYSCVGVW-------TTPSYVGFTDTE---------RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASV 71 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~-------~~Ps~v~~~~~~---------~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 71 (539)
..|+||+||.++++++. .+||+|+...+. .++|++|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~----------------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL----------------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccCCCcceEecchhhhcC----CCc-----------------
Confidence 46999999999999987 689988875322 35676653210 000
Q ss_pred hccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEeCCCCCHHHHHHHHH
Q 009246 72 QGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGS--TIKNAVVTVPAYFNDSQRQATKD 149 (539)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~ 149 (539)
.-.+|++ + ..+.--+.+..+++++... .++. .-..+++|.|...+..+|+.+.+
T Consensus 61 ---~~~~P~~-----~-------------G~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~~~e 116 (373)
T smart00268 61 ---ELKYPIE-----H-------------GIVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREKILE 116 (373)
T ss_pred ---eecCCCc-----C-------------CEEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHHHHH
Confidence 0011221 0 1122334555666666542 2222 22468999999999999999977
Q ss_pred HH-HHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 009246 150 AG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (539)
Q Consensus 150 Aa-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 228 (539)
.+ +..|++.+.++.+|.+|+++++ ..+-+|+|+|+++++++.+. +|.. +........+||.++|+.|
T Consensus 117 ~lfE~~~~~~v~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~GG~~l~~~l 184 (373)
T smart00268 117 IMFETFNFPALYIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIAGRDLTDYL 184 (373)
T ss_pred HhhccCCCCeEEEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCcHHHHHHHH
Confidence 75 5779999999999999999875 23569999999999999987 2322 2223334689999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc-------------------eEEEEEecccCCeeeEEEEc
Q 009246 229 VNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-------------------QTTIEIDSLYEGIDFYSTIT 289 (539)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-------------------~~~i~i~~~~~g~d~~~~it 289 (539)
.+++...- ...+. ..-...++.+|+.++.-. ..... +.+|..+ .+.
T Consensus 185 ~~~l~~~~---~~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg~~~--~~~ 249 (373)
T smart00268 185 KELLSERG---YQFNS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDGNTI--KVG 249 (373)
T ss_pred HHHHHhcC---CCCCc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCCCEE--EEC
Confidence 98886510 00110 011234555555542210 01111 2234333 333
Q ss_pred HHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHHHHHhhh----C-C--ccccc
Q 009246 290 RARF---EELNMDL-----FRKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQLLQDFF----N-G--KELCK 352 (539)
Q Consensus 290 r~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~f----~-~--~~v~~ 352 (539)
.+.| |.++.|. ...+.+.|.++|..+..+ ..-.+.|+|+||+|++|.+.++|.+.+ + . ..+..
T Consensus 250 ~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~ 329 (373)
T smart00268 250 NERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIA 329 (373)
T ss_pred hHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEec
Confidence 3332 2333332 236778888888876433 222567999999999999999998876 2 1 12334
Q ss_pred cCCCchhhHhHHHHHHHH
Q 009246 353 NINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 353 ~~~p~~aVa~GAa~~a~~ 370 (539)
+.++..++=.||+++|..
T Consensus 330 ~~~~~~~~W~G~silas~ 347 (373)
T smart00268 330 PPERKYSVWLGGSILASL 347 (373)
T ss_pred CCCCccceEeCcccccCc
Confidence 456667777888887653
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.67 E-value=1.4e-14 Score=146.11 Aligned_cols=208 Identities=15% Similarity=0.197 Sum_probs=139.1
Q ss_pred EEEEeCCCCCHHHH-HHHHHHHHHc------------CCceeEeechhHHHHHhcccccccC----CCCCeEEEEEEeCC
Q 009246 131 AVVTVPAYFNDSQR-QATKDAGVIA------------GLNVMRIINEPTAAAIAYGLDKKAT----SVGEKNVLIFDLGG 193 (539)
Q Consensus 131 ~VitVPa~~~~~qr-~~l~~Aa~~a------------Gl~~~~li~Ep~Aaa~~~~~~~~~~----~~~~~~vlV~D~Gg 193 (539)
++...|..+...++ +.+++..... -+..+.+++||.+|.+.+....... ...+..++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 44599999865554 6677654321 1234678999999988776643321 12345789999999
Q ss_pred ceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEE
Q 009246 194 GTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTI 273 (539)
Q Consensus 194 gT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i 273 (539)
||+|++++. +..+. ....+....|..++.+.+.+.+.++. .+..+ +.. .+.+..+.-+ +
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~--~~~---~ie~~l~~g~----------i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKE---EGASI--TPY---MLEKGLEYGA----------C 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhC---CCCCC--CHH---HHHHHHHcCc----------E
Confidence 999999996 33332 33445578999999999998885432 12221 221 2222222111 1
Q ss_pred EEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcccccc
Q 009246 274 EIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN 353 (539)
Q Consensus 274 ~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~ 353 (539)
.+ ..+.. +.+ ++++.++++++++++...++..+.. ..+++.|+|+||++++ +++.|++.|+.. ...
T Consensus 254 ~~---~~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~ 319 (344)
T PRK13917 254 KL---NQKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA 319 (344)
T ss_pred Ee---CCCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc
Confidence 11 11111 122 3567778888999998888887753 3478999999999997 899999999754 456
Q ss_pred CCCchhhHhHHHHHHHHHhC
Q 009246 354 INPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 354 ~~p~~aVa~GAa~~a~~~~~ 373 (539)
.||..|.|+|...+|..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 79999999999999986653
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.63 E-value=9.2e-15 Score=146.62 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=135.1
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEE
Q 009246 127 TIKNAVVTVPAYFNDSQRQATKDAGVIA---------GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFD 197 (539)
Q Consensus 127 ~~~~~VitVPa~~~~~qr~~l~~Aa~~a---------Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~D 197 (539)
.+..+|+..|..+...||+.+++..... -+..+.+++||.+|.+.+..+..........++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4557999999999999999999876532 3355789999999988876543222235667899999999999
Q ss_pred EEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEec
Q 009246 198 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDS 277 (539)
Q Consensus 198 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~ 277 (539)
+.++. +..+ +....+....|..++-+.+.+.+.+++. .....+.. .+....+.-|.. .
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~---~i~~~l~~g~~~---------~--- 238 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID---RIDLALRTGKQP---------R--- 238 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH---HHHHHHHhCCce---------e---
Confidence 98774 3333 3455566788999999888888877653 22101111 111111111110 0
Q ss_pred ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCc
Q 009246 278 LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPD 357 (539)
Q Consensus 278 ~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~ 357 (539)
..+... .|+ +.+ +.....+++++..+.+.+. ...+++.|+|+||++.+ +++.|++.||...+....||.
T Consensus 239 -~~gk~~--di~-~~~-~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~l--l~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 239 -IYQKPV--DIK-RCL-ELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAFL--FKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred -ecceec--Cch-HHH-HHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHHH--HHHHHHHHCCCCeeEecCCcH
Confidence 012111 222 112 2333344444444444331 12458899999999995 889999999876666678999
Q ss_pred hhhHhHHHHHH
Q 009246 358 EAVAYGAAVQA 368 (539)
Q Consensus 358 ~aVa~GAa~~a 368 (539)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988765
No 38
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.63 E-value=3.5e-14 Score=147.66 Aligned_cols=203 Identities=18% Similarity=0.149 Sum_probs=131.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEeechhHHHHHhccccccc-CCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 130 NAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKA-TSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~A-a~~aGl~~~~li~Ep~Aaa~~~~~~~~~-~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
.+++|.|..++..+|+.+.+. .+..+++.+.+..+|.+|++++...... ......+-||+|+|.|+++++.+.- |.
T Consensus 104 ~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G~ 181 (414)
T PTZ00280 104 YFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--GY 181 (414)
T ss_pred ceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--CE
Confidence 579999999999999999775 4556999999999999999876332110 0012335599999999999988762 32
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc-----------------e
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-----------------Q 270 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-----------------~ 270 (539)
.- .......++||.++++.|.+++.++. ..+... .....++.+|+.++.-. .
T Consensus 182 ~l-~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~ 250 (414)
T PTZ00280 182 VI-GSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHF 250 (414)
T ss_pred Ec-ccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCccccc
Confidence 21 22223358999999999999886531 111111 11234566666654311 0
Q ss_pred EEEEEecccCCeeeEEEEcHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHH
Q 009246 271 TTIEIDSLYEGIDFYSTITRARFE---ELNMDLF------RKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQ 339 (539)
Q Consensus 271 ~~i~i~~~~~g~d~~~~itr~~~e---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~ 339 (539)
..+.+++...|....+.|..+.|. -+|.|-+ ..+.+.|.++|..+..+ ..-.+.|+|+||+|.+|.+.+
T Consensus 251 ~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~e 330 (414)
T PTZ00280 251 KKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDK 330 (414)
T ss_pred ceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHH
Confidence 112222222234445677777663 3454532 14567788888876533 223678999999999999999
Q ss_pred HHHhhh
Q 009246 340 LLQDFF 345 (539)
Q Consensus 340 ~l~~~f 345 (539)
+|++.+
T Consensus 331 RL~~El 336 (414)
T PTZ00280 331 RLQRDV 336 (414)
T ss_pred HHHHHH
Confidence 999877
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.56 E-value=2.1e-13 Score=141.52 Aligned_cols=305 Identities=19% Similarity=0.229 Sum_probs=176.4
Q ss_pred CCCCEEEEEcCccceeeeEE-------ecceEEEecCC-----ceEecHHHHhhHhhCCCchhhhhhHhhCCCCCChhhh
Q 009246 5 GEGPAIGIDLGTTYSCVGVW-------TTPSYVGFTDT-----ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQ 72 (539)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~-------~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 72 (539)
.+..+|-||+|+.+++++++ .+||++..... ...+|..+... . +... +
T Consensus 2 d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~~~~~~~g~~~~~~--~-~~~~---~-------------- 61 (393)
T PF00022_consen 2 DENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNSSNDYYVGDEALSP--R-SNLE---L-------------- 61 (393)
T ss_dssp TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSSSSSCEETHHHHHT--G-TGEE---E--------------
T ss_pred CCCCEEEEECCCceEEEEECCCCCCCCcCCCccccccccccceeEEeecccccc--h-hhee---e--------------
Confidence 35678999999999999998 57777765433 34677763321 0 0000 0
Q ss_pred ccccccCeEEEecCCCCceEEEEEcCCceEEeHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHH-H
Q 009246 73 GDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDA-G 151 (539)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-a 151 (539)
..|++ . ..+.--+.+..++.++..... .....-..++++.|..++..+|+.+.+. .
T Consensus 62 ----~~p~~-----------------~-g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lf 118 (393)
T PF00022_consen 62 ----RSPIE-----------------N-GVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILF 118 (393)
T ss_dssp ----EESEE-----------------T-TEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHH
T ss_pred ----eeecc-----------------c-ccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhh
Confidence 01110 0 011222344555555544221 1122334689999999999999988665 5
Q ss_pred HHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHH
Q 009246 152 VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNH 231 (539)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 231 (539)
+..+++.+.++.+|.+|+++++... -||+|+|.+.+.++.+. +|.. +........+||.++++.|.++
T Consensus 119 E~~~~~~v~~~~~~~~a~~~~g~~t---------glVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~lt~~l~~l 186 (393)
T PF00022_consen 119 EKFGVPSVYFIPSPLLALYASGRTT---------GLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDLTEYLKEL 186 (393)
T ss_dssp HTS--SEEEEEEHHHHHHHHTTBSS---------EEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHHHHHH
T ss_pred cccccceeeeeeccccccccccccc---------ccccccceeeeeeeeee--eccc-cccccccccccHHHHHHHHHHH
Confidence 6779999999999999998886543 39999999999998875 3322 1222233689999999999988
Q ss_pred HHHHHHhhcc-CCCC------CCHHHHHHHHHHHHHHhhhc---------------CCCceEEEEEecccCCeeeEEEEc
Q 009246 232 FVQEFKRKNK-KDIS------GNPRALRRLRTACERAKRTL---------------SSTAQTTIEIDSLYEGIDFYSTIT 289 (539)
Q Consensus 232 l~~~~~~~~~-~~~~------~~~~~~~~l~~~~e~~K~~L---------------s~~~~~~i~i~~~~~g~d~~~~it 289 (539)
+.++-..... .... ........-....+.+|+.+ .......+.++ +|. .+.+.
T Consensus 187 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~i~~~ 261 (393)
T PF00022_consen 187 LKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--TIILG 261 (393)
T ss_dssp HHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--EEEES
T ss_pred HHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--ccccc
Confidence 8774111000 0000 00000011112233333332 11222334433 444 34556
Q ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCcC--CcceEEEeCCCcCcHHHHHHHHhhhCC----
Q 009246 290 RARFEELNMDLFR----------------KCMEPVEKCLRDAKMDKS--TVHDVVLVGGSTRIPKVQQLLQDFFNG---- 347 (539)
Q Consensus 290 r~~~e~~~~~~~~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f~~---- 347 (539)
.+.| .+.+.+++ .+.++|.+++..+..+.. -.+.|+|+||+|++|.+.++|.+.+..
T Consensus 262 ~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~ 340 (393)
T PF00022_consen 262 KERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPS 340 (393)
T ss_dssp THHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGT
T ss_pred cccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhc
Confidence 5554 22333322 467788888887754322 267899999999999999999876622
Q ss_pred ---ccccccC-CCchhhHhHHHHHHHH
Q 009246 348 ---KELCKNI-NPDEAVAYGAAVQAAI 370 (539)
Q Consensus 348 ---~~v~~~~-~p~~aVa~GAa~~a~~ 370 (539)
.++..+. +|..++=.||+++|..
T Consensus 341 ~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 341 STKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp TSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred cccceeccCchhhhhcccccceeeecc
Confidence 2344445 7899999999998764
No 40
>PTZ00281 actin; Provisional
Probab=99.51 E-value=8.3e-13 Score=135.46 Aligned_cols=214 Identities=19% Similarity=0.234 Sum_probs=139.8
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+++|-|..+...+|+.+.+ ..+..+++.+.+..+|.+++++++. .+-+|+|+|.+.+.++-+.- |
T Consensus 102 ~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~---------~tglVVDiG~~~t~v~PV~d--G- 169 (376)
T PTZ00281 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR---------TTGIVMDSGDGVSHTVPIYE--G- 169 (376)
T ss_pred CeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------ceEEEEECCCceEEEEEEEe--c-
Confidence 467889999999999999976 5777899999999999999987653 24599999999999876652 2
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc----------------eE
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA----------------QT 271 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----------------~~ 271 (539)
+.+........+||.++++.|.+.+..+ +..... . .. ...++.+|+.++.-. ..
T Consensus 170 ~~~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~ 239 (376)
T PTZ00281 170 YALPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSALEK 239 (376)
T ss_pred ccchhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCcccce
Confidence 1222333346899999999999887543 111110 1 11 123555666543211 11
Q ss_pred EEEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHHHH
Q 009246 272 TIEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQLL 341 (539)
Q Consensus 272 ~i~i~~~~~g~d~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l 341 (539)
... +.+|.. +.+..+.| |-+++|.+ ..+.+.|.++|..+..+ ..-.+.|+|+||+|.+|.+.++|
T Consensus 240 ~y~---LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL 314 (376)
T PTZ00281 240 SYE---LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRM 314 (376)
T ss_pred eEE---CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHH
Confidence 122 223433 34555444 34444432 24567777777776433 22256899999999999999998
Q ss_pred Hhhh----CC---ccccccCCCchhhHhHHHHHHH
Q 009246 342 QDFF----NG---KELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 342 ~~~f----~~---~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
++.+ |. .++..+.++..++=+||+++|.
T Consensus 315 ~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 315 NKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 8766 21 1244445677888889988875
No 41
>PTZ00452 actin; Provisional
Probab=99.50 E-value=2.4e-12 Score=131.76 Aligned_cols=214 Identities=16% Similarity=0.186 Sum_probs=138.4
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~A-a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+++|-|..++..+|+.+.+. .+..+++.+.+.+.|.+++++++.. +-||+|+|.+.++++-+. +|.
T Consensus 101 ~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~---------tglVVDiG~~~t~v~PV~--dG~ 169 (375)
T PTZ00452 101 QPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKT---------IGLVVDSGEGVTHCVPVF--EGH 169 (375)
T ss_pred CceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCc---------eeeeecCCCCcceEEEEE--CCE
Confidence 4689999999999999999665 5667889999999999999886532 449999999999998776 232
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc----------------eE
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA----------------QT 271 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~----------------~~ 271 (539)
. +.......++||.++++.|.+.+.++ +...... .. ...++.+|+.++.-. ..
T Consensus 170 ~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~ 238 (375)
T PTZ00452 170 Q-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDS 238 (375)
T ss_pred E-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCc
Confidence 2 22233346799999999998887432 1111111 00 112444555543211 11
Q ss_pred EEEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHHHH
Q 009246 272 TIEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQLL 341 (539)
Q Consensus 272 ~i~i~~~~~g~d~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l 341 (539)
...+ .+|.. +.+..+.| |-+|+|.+ ..+.++|.+++..+..+ ..-.+.|+|+||+|.+|.+.++|
T Consensus 239 ~y~L---PDg~~--i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 313 (375)
T PTZ00452 239 PYKL---PDGNI--LTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRL 313 (375)
T ss_pred eEEC---CCCCE--EEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHH
Confidence 2222 23443 45666555 23444432 24567777777776433 23367899999999999999999
Q ss_pred Hhhh----CC---ccccccCCCchhhHhHHHHHHH
Q 009246 342 QDFF----NG---KELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 342 ~~~f----~~---~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
++.+ |. .++..+.++..++=.|++++|.
T Consensus 314 ~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 314 SNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 8766 21 1233344566677788888875
No 42
>PTZ00004 actin-2; Provisional
Probab=99.49 E-value=1.8e-12 Score=133.19 Aligned_cols=214 Identities=17% Similarity=0.189 Sum_probs=139.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+++|-|..++..+|+.+.+ ..+..+++.+.+..+|.+|+++++. .+-+|+|+|.+.++++.+. +|.
T Consensus 102 ~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~---------~tglVVDiG~~~t~v~pV~--dG~ 170 (378)
T PTZ00004 102 HPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIY--EGY 170 (378)
T ss_pred CcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------ceEEEEECCCCcEEEEEEE--CCE
Confidence 457899999999999988865 4667899999999999999987653 2459999999999998776 232
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc-----------------e
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-----------------Q 270 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-----------------~ 270 (539)
. +.......++||.++++.|.+.+..+. ..+.. .. -...++..|+.++.-. .
T Consensus 171 ~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~ 239 (378)
T PTZ00004 171 S-LPHAIHRLDVAGRDLTEYMMKILHERG-----TTFTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYE 239 (378)
T ss_pred E-eecceeeecccHHHHHHHHHHHHHhcC-----CCCCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccc
Confidence 2 223333468999999999999875431 11111 11 1123445555442210 1
Q ss_pred EEEEEecccCCeeeEEEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHH
Q 009246 271 TTIEIDSLYEGIDFYSTITRARF---EELNMDL------FRKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQ 339 (539)
Q Consensus 271 ~~i~i~~~~~g~d~~~~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~ 339 (539)
..+. +.+|.. +.+..+.| |-+|.|- ...+.++|.+++..+..+ ..-.+.|+|+||+|.+|.+.+
T Consensus 240 ~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~ 314 (378)
T PTZ00004 240 ESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPE 314 (378)
T ss_pred eEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHH
Confidence 1222 224443 34555554 3355553 234567778888776533 223678999999999999999
Q ss_pred HHHhhhC----C---ccccccCCCchhhHhHHHHHHH
Q 009246 340 LLQDFFN----G---KELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 340 ~l~~~f~----~---~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
+|+..+. . .++..+.++..++=+||+++|.
T Consensus 315 RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 315 RLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9987662 1 1234445677777788888765
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.44 E-value=9.2e-12 Score=127.55 Aligned_cols=214 Identities=15% Similarity=0.143 Sum_probs=138.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+++|-|+.++..+|+.+.+ ..+..+++.+.+..+|.+|+++++. .+-+|+|+|.+.+.++-+- +|.
T Consensus 107 ~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~---------~tglVVD~G~~~t~v~PV~--~G~ 175 (380)
T PTZ00466 107 HPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK---------TNGTVLDCGDGVCHCVSIY--EGY 175 (380)
T ss_pred CeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC---------ceEEEEeCCCCceEEEEEE--CCE
Confidence 457889999999999999865 5677888999999999999988753 2459999999999997765 232
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc---------------eEE
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA---------------QTT 272 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~---------------~~~ 272 (539)
. +.......++||.++++.|.+.+.++ .+..+. . .-+..++.+|+.++.-. ...
T Consensus 176 ~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~----~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~ 244 (380)
T PTZ00466 176 S-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNT----S---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLP 244 (380)
T ss_pred E-eecceeEecCchhHHHHHHHHHHHhc---CCCCCc----H---HHHHHHHHHHHhCeEecCChHHHHhhcccccccee
Confidence 2 22233346899999999999887532 111111 1 11223445555543210 011
Q ss_pred EEEecccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHHHHHHHH
Q 009246 273 IEIDSLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPKVQQLLQ 342 (539)
Q Consensus 273 i~i~~~~~g~d~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~ 342 (539)
.. +.+|.. +.+..+.| |-+|.|-+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.++|+
T Consensus 245 y~---LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 319 (380)
T PTZ00466 245 YI---LPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLL 319 (380)
T ss_pred EE---CCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHH
Confidence 22 224443 45566555 33444422 24566777777776533 223678999999999999999998
Q ss_pred hhhCC-------ccccccCCCchhhHhHHHHHHH
Q 009246 343 DFFNG-------KELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 343 ~~f~~-------~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
..+.. ..+..+.++..++=+||+++|.
T Consensus 320 ~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 320 NEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 87621 1234445666777789888875
No 44
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.31 E-value=1.3e-11 Score=123.52 Aligned_cols=174 Identities=16% Similarity=0.283 Sum_probs=99.9
Q ss_pred ceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 009246 157 NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEF 236 (539)
Q Consensus 157 ~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 236 (539)
..+.+++||.||.+.+..... +...+||+|+||+|+|++++.- +.-.+....+...+|-..+-+.+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~----~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLD----EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---
T ss_pred eeEEEEcccHHHHHHHHHhhc----ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-
Confidence 467889999999998765522 4467999999999999999862 211223344556899999888888877541
Q ss_pred HhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 009246 237 KRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAK 316 (539)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 316 (539)
. ... +......+.. .+.. . . .+.......+ ..+++.++++..++++.+.|.+.+.+
T Consensus 214 ~----~~~--s~~~~~~ii~----~~~~---~--~--~~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 G----IDT--SELQIDDIIR----NRKD---K--G--YLRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp S----BHH--HHHHHHHHHH----TTT----H--H--HHHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred c----CCC--cHHHHHHHHH----hhhc---c--c--eecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 1 000 0001111111 0000 0 0 0000000000 12344445555555555555555432
Q ss_pred CCcCCcceEEEeCCCcCcHHHHHHHHhhhC--CccccccCCCchhhHhHHH
Q 009246 317 MDKSTVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNINPDEAVAYGAA 365 (539)
Q Consensus 317 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVa~GAa 365 (539)
..+++.|+|+||++.+ +.+.|++.|+ ...+....||+.|.|+|-+
T Consensus 270 --~~~~~~I~~vGGGA~l--l~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGAIL--LKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTHHH--HHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcHHH--HHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 3467899999999986 9999999985 3467788899999999964
No 45
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.15 E-value=1e-09 Score=111.96 Aligned_cols=162 Identities=14% Similarity=0.155 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHcCCceeEeechhHHHHHhcc-cc-cccCCCCCe-EEEEEEeCCceEEEEEEEEeCCEEEEEEecCC
Q 009246 140 NDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYG-LD-KKATSVGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGD 216 (539)
Q Consensus 140 ~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~-~~-~~~~~~~~~-~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~ 216 (539)
.....+.+.++++.||++...+..+|.|.+-.+. +. ......... .++++|+|+++++++++.-.. +.....
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~-----~~~~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGR-----MLFTRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCe-----EEEEEE
Confidence 3456778889999999999999999999876552 10 000011233 499999999999999997443 444556
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHH
Q 009246 217 THLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEL 296 (539)
Q Consensus 217 ~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~ 296 (539)
..+||.++++.+.+.+. .+ ...||+.|+....... .-.++
T Consensus 216 i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL---------------------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc---------------------hhHHH
Confidence 78999999998875431 11 2567777775321110 01245
Q ss_pred HHHHHHHHHHHHHHHHHHc--CCCcCCcceEEEeCCCcCcHHHHHHHHhhhC
Q 009246 297 NMDLFRKCMEPVEKCLRDA--KMDKSTVHDVVLVGGSTRIPKVQQLLQDFFN 346 (539)
Q Consensus 297 ~~~~~~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 346 (539)
+++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 6677777777777777643 2233458999999999999999999999994
No 46
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.09 E-value=1e-08 Score=99.53 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCC--CCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCC
Q 009246 107 EISSMVLIKMREIAEAYLGST--IKNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGE 183 (539)
Q Consensus 107 ~v~~~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~ 183 (539)
++..+.++|..+ .++... -.-++||-|++=+.+.|+.+.+ +++...++...+..+|+++|++.+.
T Consensus 86 D~~~~~w~~~~~---~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~Gr--------- 153 (426)
T KOG0679|consen 86 DLFEMQWRYAYK---NQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGR--------- 153 (426)
T ss_pred HHHHHHHHHHHh---hhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCC---------
Confidence 344555555543 223322 2357999999999999988866 5677888999999999999998653
Q ss_pred eEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009246 184 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (539)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 235 (539)
.+-||+|+|++++.++-+. +|.+-..+... ..+||+.++..+.+.|..+
T Consensus 154 stalVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 3459999999999998876 33333334443 6899999999999988765
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.06 E-value=2.6e-08 Score=96.28 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=108.5
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
..++|.+|.+.....-.. ..+ .|+|+||..+-+..++ ++.+.-.........|+..|.+.+++.+--.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~----~~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~--- 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP----EAR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSV--- 141 (248)
T ss_pred CceEEhhHHHHHHHHHCC----CCC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCH---
Confidence 367788776654332222 112 5999999988888887 55555455667778899989888887663111
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhh----cCCCceEEEEEec-ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 240 NKKDISGNPRALRRLRTACERAKRT----LSSTAQTTIEIDS-LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRD 314 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~----Ls~~~~~~i~i~~-~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 314 (539)
++++..+.. ..-+..+.+..+. ...... ...+ .++++..+++.+...+.+.+..
T Consensus 142 ----------------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~--~g~~---~~di~~~~~~~va~~i~~~~~~ 200 (248)
T TIGR00241 142 ----------------EELGSLAEKADRKAKISSMCTVFAESELISLLA--AGVK---KEDILAGVYESIAERVAEMLQR 200 (248)
T ss_pred ----------------HHHHHHHhcCCCCCCcCCEeEEEechhHHHHHH--CCCC---HHHHHHHHHHHHHHHHHHHHhh
Confidence 122222222 1222233333221 000000 0112 3466777777777777776655
Q ss_pred cCCCcCCcc-eEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHH
Q 009246 315 AKMDKSTVH-DVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 315 ~~~~~~~i~-~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
.+ ++ .|+|+||.+++|++.+.+++.+ +.++..+.+|..+.|+|||+
T Consensus 201 ~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 201 LK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred cC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 43 44 7999999999999999999999 67888888999999999997
No 48
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.05 E-value=7.8e-09 Score=106.68 Aligned_cols=98 Identities=13% Similarity=0.189 Sum_probs=76.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+++|-|..+...+|+.+.+ +++...++.+.+..++.+++++.+... .+.+|+|+|.+.++|+-+--.
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-------~~g~ViD~G~~~t~v~PV~DG--- 176 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-------ETGLVIDSGDSVTHVIPVVDG--- 176 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-------CceEEEEcCCCceeeEeeecc---
Confidence 368999999999999988855 577788888889999999887765432 356999999999999887622
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHH
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEF 236 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 236 (539)
+.+........+||++++..|.+.+....
T Consensus 177 ~~l~~a~~ri~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 177 IVLPKAVKRIDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred ccccccceeeecCcHHHHHHHHHHHhhcc
Confidence 22333344478999999999999887743
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.03 E-value=2.4e-09 Score=108.55 Aligned_cols=181 Identities=18% Similarity=0.261 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHhcccccc--cCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCC
Q 009246 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKK--ATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHL 219 (539)
Q Consensus 142 ~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~--~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~l 219 (539)
..-+...++++.|||+...+--+|.|.+-.+..... ........++++|+|+.++.++++. ++. ........+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~---~~f~R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGK---PIFSRSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTE---EEEEEEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCE---EEEEEEEee
Confidence 345667889999999998887777776554433211 1112346799999999999999987 333 233344689
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHH
Q 009246 220 GGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 299 (539)
Q Consensus 220 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~ 299 (539)
||.++++.+.+.+.-.+ .++|..|..-+. ..+...+.+.+
T Consensus 211 G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l---------------------~~~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELGIDF-------------------EEAEELKRSGGL---------------------PEEYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCC---------------------CcchHHHHHHH
Confidence 99999999997753222 456666664211 00233456667
Q ss_pred HHHHHHHHHHHHHHH--cCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcccc---------ccC----------CCch
Q 009246 300 LFRKCMEPVEKCLRD--AKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELC---------KNI----------NPDE 358 (539)
Q Consensus 300 ~~~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~---------~~~----------~p~~ 358 (539)
.++++...|++.++- .......|+.|+|+||+++++.|.+.|++.+ +.++. .+. .|..
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~ 329 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQF 329 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHH
Confidence 777777777777763 2233457999999999999999999999999 33221 111 2567
Q ss_pred hhHhHHHHHH
Q 009246 359 AVAYGAAVQA 368 (539)
Q Consensus 359 aVa~GAa~~a 368 (539)
++|.|.|+.+
T Consensus 330 avA~GLAlR~ 339 (340)
T PF11104_consen 330 AVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 8999999864
No 50
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.98 E-value=1.3e-07 Score=103.54 Aligned_cols=327 Identities=16% Similarity=0.256 Sum_probs=185.5
Q ss_pred EecHHHHhhHhh----CCCchhhhhhHhh--------CCCCCChhhhcc----ccccCeEEEecCCCCceEEE-EEc---
Q 009246 38 LIGDAAKNQVAM----NPTNTVFDAKRLI--------GRRFSDASVQGD----MKLWPFKVIAGPADKPMIGV-NYK--- 97 (539)
Q Consensus 38 ~~G~~A~~~~~~----~~~~~~~~~k~~l--------g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v-~~~--- 97 (539)
-||.+|...+.. .....+.+.||+| |..|+....... ....|+.-..+++|.+.+.+ ...
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 489888766533 3445566778877 333432222111 11223333334555555444 111
Q ss_pred -CCceEEeHHHHHHHHHHHHHHHHHHHhCC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc--------
Q 009246 98 -GEEKQFAAEEISSMVLIKMREIAEAYLGS--------------TIKNAVVTVPAYFNDSQRQATKDAGVIA-------- 154 (539)
Q Consensus 98 -~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~~~~~qr~~l~~Aa~~a-------- 154 (539)
.-...|+-.-++.++|..+..+|..+.+. ....+++|+|+.-...+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 11234677788888888888777666543 3457999999999999999999888776
Q ss_pred CCc--------------------ee-EeechhHHHHHhcccc------------------cccC-------CCCCeEEEE
Q 009246 155 GLN--------------------VM-RIINEPTAAAIAYGLD------------------KKAT-------SVGEKNVLI 188 (539)
Q Consensus 155 Gl~--------------------~~-~li~Ep~Aaa~~~~~~------------------~~~~-------~~~~~~vlV 188 (539)
|+. .+ .=-+|.+|.-+-|..+ +... ..+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 01 1124555554433221 1110 122346899
Q ss_pred EEeCCceEEEEEEEEe--C--C-EEEEE----EecCCCCCchHHHHHHHHHH-HHHHHHhh----------------ccC
Q 009246 189 FDLGGGTFDVSLLTIE--E--G-IFEVK----ATAGDTHLGGEDFDNRMVNH-FVQEFKRK----------------NKK 242 (539)
Q Consensus 189 ~D~GggT~Dvsv~~~~--~--~-~~~v~----~~~~~~~lGG~~~d~~l~~~-l~~~~~~~----------------~~~ 242 (539)
+|+||||||+.|-... . + ...+. -..| -.+.|+|+-..+++. ++..+.+. ++.
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 9999999999987765 2 2 22221 1223 578999986666554 33332221 111
Q ss_pred CCCC-CHHH-------------HHHHHHHHHHHhhhcCCCceEEEEEecc---------------------------cCC
Q 009246 243 DISG-NPRA-------------LRRLRTACERAKRTLSSTAQTTIEIDSL---------------------------YEG 281 (539)
Q Consensus 243 ~~~~-~~~~-------------~~~l~~~~e~~K~~Ls~~~~~~i~i~~~---------------------------~~g 281 (539)
+-.. ..+. ...++.++|+.-.. .........+..+ ++=
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 1000 0000 11344555543221 0001111111111 111
Q ss_pred eeeEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCC--c--------
Q 009246 282 IDFYSTITRARFEELNM---DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNG--K-------- 348 (539)
Q Consensus 282 ~d~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--~-------- 348 (539)
.+..+.|+...+...+. -.+.+++..+-+++...+ -|.++|+|=-|++|.||..+++..|- .
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34556888888888774 566666666667776654 45799999999999999999998741 1
Q ss_pred ---------cccccCCCchhhHhHHHHHHHHH
Q 009246 349 ---------ELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 349 ---------~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
+-..-.||-..||.||.+++...
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~ 835 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAE 835 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhc
Confidence 11133489999999999876543
No 51
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.89 E-value=4.1e-07 Score=87.32 Aligned_cols=158 Identities=15% Similarity=0.202 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCCceeEeechhHHHHHhcccccccCC--CCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCch
Q 009246 144 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATS--VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 221 (539)
Q Consensus 144 r~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~--~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG 221 (539)
-+....|++.|||+...+--|.-|.--+|........ ..-.+++|+|+|+..+.+.++.-+. .-...+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCcH
Confidence 3455789999999998888888888666642111111 1122378999999999999998544 44455678999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHH
Q 009246 222 EDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLF 301 (539)
Q Consensus 222 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~ 301 (539)
+.+.+.+.+.+.-. ...++.+|....... +.-.+...+++
T Consensus 226 ~Qlt~~i~r~~~L~-------------------~~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAYSLT-------------------EEKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHhCCC-------------------hhHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 99999988655211 134566666533221 22335567777
Q ss_pred HHHHHHHHHHHHHc--CCCcCCcceEEEeCCCcCcHHHHHHHHhhhC
Q 009246 302 RKCMEPVEKCLRDA--KMDKSTVHDVVLVGGSTRIPKVQQLLQDFFN 346 (539)
Q Consensus 302 ~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~ 346 (539)
+++.+.|.+.|+-. .-...+|+.|+|.||++.+-.+.+.+.+.++
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 77777777777643 2234579999999999999999999999983
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.81 E-value=5e-09 Score=106.26 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=60.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHH--------HcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEE
Q 009246 129 KNAVVTVPAYFNDSQRQATKDAGV--------IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSL 200 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~Aa~--------~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 200 (539)
.-.+||.++..-.+.++.+..+.. .||++...++. |.|++.+...+ + ++..++++|+||||+++++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E----ke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E----RNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h----ccCceEEEEeCCCceEEEE
Confidence 346888877665555444444221 25666656655 88888776632 3 5678999999999999999
Q ss_pred EEEeCCEEEEEEecCCCCCchHHHHHH
Q 009246 201 LTIEEGIFEVKATAGDTHLGGEDFDNR 227 (539)
Q Consensus 201 ~~~~~~~~~v~~~~~~~~lGG~~~d~~ 227 (539)
++-.. +...+..++||+++...
T Consensus 163 f~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 163 FDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EECCE-----EEEEEEEecccceEEEC
Confidence 98544 44555678999988643
No 53
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.76 E-value=2.5e-07 Score=91.62 Aligned_cols=174 Identities=16% Similarity=0.176 Sum_probs=106.9
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEe-CCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKR 238 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 238 (539)
.+++|.+|-|........ +.-.|+|+||-.+-+ +.+. +|.+.-...+..+.-|.-.|=+.+++.|-
T Consensus 249 ~vitEItcHA~GA~~l~P------~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lg----- 315 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMYP------GTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMN----- 315 (432)
T ss_pred ceeeeHHHHHHHHHHHCC------CCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHcC-----
Confidence 466899988775433222 223899999986664 5554 35554445555555565555555555441
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEec-----ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 239 KNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDS-----LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (539)
Q Consensus 239 ~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~-----~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 313 (539)
.+ ...|-..+.+++....-+..+.+..++ +..| .++ ++++..+...+...+...+.
T Consensus 316 ---i~-------leEl~~lA~~a~~pv~ISS~CtVFAESEVIslla~G------~~r---eDIaAGL~~SIA~Rv~s~l~ 376 (432)
T TIGR02259 316 ---MG-------LHELGPLAMKSSKPARINSTCTVFAGAELRDRLALG------DKR---EDILAGLHRAIILRAISIIS 376 (432)
T ss_pred ---CC-------HHHHHHHHhcCCCCCCcCCcceEEehHHHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHHh
Confidence 11 222333344555554445555554432 1122 233 34455666666665555555
Q ss_pred HcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhC----CccccccCCCchhhHhHHHHHH
Q 009246 314 DAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFN----GKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 314 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~----~~~v~~~~~p~~aVa~GAa~~a 368 (539)
+.. .--..|+|+||.++.+.+.+.|++.+. +.++..+.+|+.+-|+|||++|
T Consensus 377 r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 377 RSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred ccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 442 112469999999999999999999984 4667788999999999999975
No 54
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.70 E-value=2.6e-06 Score=82.41 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=100.1
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
..++|-+|.|........ ++.-.|+|+||-.+-+..+. .++.+.-...+..+.-|.-.|=+.+++.|-
T Consensus 106 ~~v~EItaha~Ga~~~~p-----p~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lg------ 173 (293)
T TIGR03192 106 KAITEIACHARGANYMGG-----NAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLMQ------ 173 (293)
T ss_pred cceeeHHHHHHHHHHhcC-----CCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHcC------
Confidence 358999988765432211 12238999999855544431 345544445555455555555445555442
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHh-hhcCCCceEEEEEec-----ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 240 NKKDISGNPRALRRLRTACERAK-RTLSSTAQTTIEIDS-----LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLR 313 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K-~~Ls~~~~~~i~i~~-----~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 313 (539)
.+ ...|-..+.+.+ ....-+..+.+..++ +..| .++ +++...+...+...+...++
T Consensus 174 --i~-------leel~~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G------~~~---edI~aGl~~sia~rv~~~~~ 235 (293)
T TIGR03192 174 --IP-------IADLGPRSFDVETEPEAVSSICVVFAKSEALGLLKAG------YTK---NMVIAAYCQAMAERVVSLLE 235 (293)
T ss_pred --CC-------HHHHHHHHHhcCCCCCCcCCcceEeccHhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHhc
Confidence 11 111212222222 222223334433321 1122 233 33455555555555555555
Q ss_pred HcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcccc-ccCCCchhhHhHHHHHHHH
Q 009246 314 DAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELC-KNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 314 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~aVa~GAa~~a~~ 370 (539)
+.++. +.|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+-|.|||++|..
T Consensus 236 ~~~i~----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 236 RIGVE----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred ccCCC----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 44322 36999999999999999999999 55665 5778999999999999864
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.69 E-value=2.4e-06 Score=85.93 Aligned_cols=176 Identities=20% Similarity=0.205 Sum_probs=101.6
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
..++|-+|.|.....-.. ..+..-.|+|+||- |.-++++.++.+.-...++.+.-|+-.|=+.+++.|.-
T Consensus 220 ~iv~EItaha~GA~~L~p---~~~~v~TIIDIGGQ--DsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi----- 289 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLAD---KQEGPATVIDIGGM--DNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRLGV----- 289 (404)
T ss_pred ceEEEEhhHHHHHHHhcc---cCCCCcEEEEeCCC--ceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHhCC-----
Confidence 347888886543221111 01224589999996 54455556776655555665555555555566655511
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHh-hhcCCCceEEEEEec-----ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH-HH
Q 009246 240 NKKDISGNPRALRRLRTACERAK-RTLSSTAQTTIEIDS-----LYEGIDFYSTITRARFEELNMDLFRKCMEPVEK-CL 312 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K-~~Ls~~~~~~i~i~~-----~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~-~l 312 (539)
+ ...|-..+.+.+ +...-+..+.+.-++ +..| .++ ++++..+...+.+.+.. ++
T Consensus 290 ---~-------ieEl~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G------~~~---eDIaAGl~~SIa~rv~~~l~ 350 (404)
T TIGR03286 290 ---D-------ITELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAEG------ASP---EDVAAAACHSVAEQVYEQQL 350 (404)
T ss_pred ---C-------HHHHHHHHHhCCCCCCCccCcccccccHhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHHh
Confidence 1 122333333432 222222222221110 0112 223 34455555555555543 34
Q ss_pred HHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHH
Q 009246 313 RDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 313 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
+..+.. +.|+++||.++++.+.+.+++.+ +.++..+.+|+.+.|.|||++|.
T Consensus 351 ~~~~i~----~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 351 QEIDVR----EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred hcCCCC----CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 443322 35999999999999999999999 67788899999999999999974
No 56
>PRK13317 pantothenate kinase; Provisional
Probab=98.57 E-value=7e-06 Score=80.02 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=42.8
Q ss_pred CcceEEEeC-CCcCcHHHHHHHHhhhC--CccccccCCCchhhHhHHHHHHH
Q 009246 321 TVHDVVLVG-GSTRIPKVQQLLQDFFN--GKELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 321 ~i~~ViLvG-G~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
.++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|.|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 79999999999998874 56788889999999999999875
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.56 E-value=1.7e-05 Score=77.99 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=109.1
Q ss_pred EeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 160 RIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 160 ~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
..++|-.|-+.+...-.+ ..+ .|+|+||- |.=++.+.+|.+.-..-+.-+.-|.-.|-+.+++.|-
T Consensus 211 ~~~~Ei~ah~kgA~~f~p---~~d---tIiDIGGQ--D~K~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~Lg------ 276 (396)
T COG1924 211 KVVVEISAHAKGARYFAP---DVD---TVIDIGGQ--DSKVIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRLG------ 276 (396)
T ss_pred cceeeeehhHHHHHHhCC---CCc---EEEEecCc--ceeEEEEeCCeeeeeEeccccccccchHHHHHHHHhC------
Confidence 456666665543322111 011 89999997 5555555577776666665555555555555554442
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecc-----cCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHH-HHH
Q 009246 240 NKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL-----YEGIDFYSTITRARFEELNMDLFRKCMEPVEK-CLR 313 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~-----~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~-~l~ 313 (539)
.+ +..+-+.+++.+..-.-+..+.+..++- ..|. ..|+++..+...+..-+-. +++
T Consensus 277 --v~-------v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~---------~~EdI~AGl~~Sv~~~v~~~~~~ 338 (396)
T COG1924 277 --VD-------VEELGKLALKATPPVKINSRCAVFAESEVISALAEGA---------SPEDILAGLAYSVAENVAEKVIK 338 (396)
T ss_pred --CC-------HHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 2334445566555434444444443320 1121 2466677777766665554 555
Q ss_pred HcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHH
Q 009246 314 DAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 314 ~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
...... -|+|+||.+....+.+++.+.+ +.++..|.+|...-|.|||++|...
T Consensus 339 ~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 339 RVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred ccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 544332 2999999999999999999999 6889999999999999999998643
No 58
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.47 E-value=4.7e-06 Score=76.95 Aligned_cols=221 Identities=19% Similarity=0.220 Sum_probs=133.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 129 KNAVVTVPAYFNDSQRQATKDA-GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~A-a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
..+.+|-|+--....|+.|.+. .+..||..+.+.-...-+.++-++... +|+|-|.|-+-+.-+-- .
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG---------vVvDSGDGVTHi~PVye---~ 169 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG---------VVVDSGDGVTHIVPVYE---G 169 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce---------EEEecCCCeeEEeeeec---c
Confidence 4678999999999999998764 778899887776554444443333322 89999999888765531 1
Q ss_pred EEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc-----------eEEEEEe
Q 009246 208 FEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA-----------QTTIEID 276 (539)
Q Consensus 208 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~-----------~~~i~i~ 276 (539)
+..-.-.+...+.|+++++-|.+++..+ .+..+-+.+ ....+..|+.|+--. ++++-++
T Consensus 170 ~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 170 FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 1112223446789999999999988764 111111111 123344555544321 1222222
Q ss_pred c--ccCCeeeEEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCcC--CcceEEEeCCCcCcHHHHHHHHhh
Q 009246 277 S--LYEGIDFYSTITRARFE---ELNMDLF-----RKCMEPVEKCLRDAKMDKS--TVHDVVLVGGSTRIPKVQQLLQDF 344 (539)
Q Consensus 277 ~--~~~g~d~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~ 344 (539)
+ +.+|.- +.+--+.|| .+++|.+ ..+.+++-.+++.+.++.. --++|+|.||++.-|.+-++|.+.
T Consensus 240 ~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 234443 344445553 4566543 2456777788887765532 256899999999999998888765
Q ss_pred hCC------------------ccccccCCCchhhHhHHHHHHHHHhC
Q 009246 345 FNG------------------KELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 345 f~~------------------~~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
+.. ..+-.+..-...|-.|.|..|..+.+
T Consensus 318 lkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 318 LKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 421 01222223345677788887776653
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.47 E-value=4.2e-06 Score=83.66 Aligned_cols=190 Identities=19% Similarity=0.264 Sum_probs=101.6
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEE-EEEEeCC
Q 009246 129 KNAVVTVPAYFNDSQRQATKDAG-VIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVS-LLTIEEG 206 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l~~Aa-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvs-v~~~~~~ 206 (539)
.-+++|-|..|...-|+.+.+.. +.-+.+.+.+ .-.|..++++.. +=+|+|+|.|-+++. +++ |
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavlya~g~t---------tG~VvD~G~gvt~~vPI~e---G 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVLYASGRT---------TGLVVDSGDGVTHVVPIYE---G 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHHHHcCCe---------eEEEEEcCCCceeeeeccc---c
Confidence 46899999999999999987753 4444444444 223333233322 349999999966554 443 2
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCCc------------eEEEE
Q 009246 207 IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTA------------QTTIE 274 (539)
Q Consensus 207 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~------------~~~i~ 274 (539)
+.+...-....+||+++.+.+...|.+ .+....... . +.-++.+|+.++... ...+.
T Consensus 166 -~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~--~---~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 166 -YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA--E---FEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred -cccchhhheecccchhhHHHHHHHHHh-----ccccccccc--H---HHHHHHhHhhhcccccccchhhhccccccccc
Confidence 233333455789999999877777765 111111110 0 111333444333211 01111
Q ss_pred Ee-cccCCeeeEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHc--CCCcCCcceEEEeCCCcCcHHHHHHHHh
Q 009246 275 ID-SLYEGIDFYSTITRARF---EELNMDLF-----RKCMEPVEKCLRDA--KMDKSTVHDVVLVGGSTRIPKVQQLLQD 343 (539)
Q Consensus 275 i~-~~~~g~d~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 343 (539)
.. .+.+|.. +.+..+.| |-+++|-+ ..+-+.+-..+-++ ++.+.-...|+|+||++..|.+.+++.+
T Consensus 235 ~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~k 312 (372)
T KOG0676|consen 235 SSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQK 312 (372)
T ss_pred ccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHH
Confidence 11 0223322 34444333 22233222 12223333333333 3334446789999999999999999988
Q ss_pred hh
Q 009246 344 FF 345 (539)
Q Consensus 344 ~f 345 (539)
..
T Consensus 313 El 314 (372)
T KOG0676|consen 313 EL 314 (372)
T ss_pred HH
Confidence 66
No 60
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.16 E-value=1.9e-05 Score=74.14 Aligned_cols=190 Identities=19% Similarity=0.199 Sum_probs=100.6
Q ss_pred HHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 151 GVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 151 a~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
-+..|.++..-=.|+++|++....... .+..+.++|+|||++|.+++.-.+ .+.-....| .|+.++..+..
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPG----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlAG----AG~mVTmlI~s 175 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPG----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLAG----AGNMVTMLINS 175 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHHCCceEEccccHHHHHhcccCCCC----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEecC----CchhhHHHHHH
Confidence 355688888888899999988765544 455689999999999999998554 333333333 45666655543
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhhhcCCC-----------ceEEEEEecc----cC-----CeeeEEEE--
Q 009246 231 HFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSST-----------AQTTIEIDSL----YE-----GIDFYSTI-- 288 (539)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~-----------~~~~i~i~~~----~~-----g~d~~~~i-- 288 (539)
.| +. ++ +.-+|..|+---.. .+..+.-+.+ +. ..+--+.|
T Consensus 176 EL--------Gl----~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GL----ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-----S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CC----CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 32 11 11 23466777641000 0011000000 00 00111222
Q ss_pred --cHHHHHHHHHHHHHHHH-HHHHHHHHHcC--CCcCCcceEEEeCCCcCcHHHHHHHHhhhCCc-------cccccCCC
Q 009246 289 --TRARFEELNMDLFRKCM-EPVEKCLRDAK--MDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-------ELCKNINP 356 (539)
Q Consensus 289 --tr~~~e~~~~~~~~~i~-~~i~~~l~~~~--~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-------~v~~~~~p 356 (539)
+-+.+..+-+..-++++ .-..++|++.. -...+|+.|+|||||+.=.=|-+++.+.+..- .+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22223222222222221 12333444332 22457999999999999888888888877432 35566689
Q ss_pred chhhHhHHHHH
Q 009246 357 DEAVAYGAAVQ 367 (539)
Q Consensus 357 ~~aVa~GAa~~ 367 (539)
..|||.|.++-
T Consensus 318 RNAVATGLvls 328 (332)
T PF08841_consen 318 RNAVATGLVLS 328 (332)
T ss_dssp STHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999874
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.12 E-value=0.00013 Score=69.85 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=99.9
Q ss_pred eechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEE-eCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhh
Q 009246 161 IINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTI-EEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRK 239 (539)
Q Consensus 161 li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~-~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 239 (539)
.++|-+|.|........ +.=.|+|+||--+-+ +++ .++.+.-...+..+.-|.-.|=+.+++.|-
T Consensus 80 ~vtEIt~ha~GA~~~~p------~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~------ 145 (262)
T TIGR02261 80 HFYSMTTHARGAIYLNP------EARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYLG------ 145 (262)
T ss_pred CeeEEeHHHHHHHHHCC------CCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHhC------
Confidence 35687777664432222 122899999986664 444 345554445555455555555555555442
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEec-----ccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009246 240 NKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDS-----LYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRD 314 (539)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~-----~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 314 (539)
.+ ...|-..+.+++....-+..+.+..++ +..| .++ ++++..+.+.+...+...+++
T Consensus 146 --i~-------leel~~~a~~~~~~~~iss~CtVFaeSevi~~~~~G------~~~---edI~aGl~~sia~r~~~~~~~ 207 (262)
T TIGR02261 146 --IA-------QDEIGSLSQQADNPEKVSGICAVLAETDVINMVSRG------ISA---PNILKGIHESMADRLAKLLKS 207 (262)
T ss_pred --CC-------HHHHHHHHhcCCCCCCcCCCceEEchhhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHHhc
Confidence 11 122333344444444444444444332 1122 233 344556666666655555555
Q ss_pred cCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcc----ccccCCCchhhHhHHHHHH
Q 009246 315 AKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKE----LCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 315 ~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~----v~~~~~p~~aVa~GAa~~a 368 (539)
.+.. -+.|+|+||.++.+.+++.|++.+++.+ +..+.+|+.+-|.|||++|
T Consensus 208 ~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 208 LGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 4321 1359999999999999999999885332 4456689999999999874
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.97 E-value=3.4e-05 Score=78.78 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=58.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---echhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCC
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~l---i~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (539)
-++||==+--.+++|+.+...+..||==++.- -.|..-|+...+-.... ......++=+|+||||+.+++++-..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S-~~~~~~V~NiDIGGGTtN~avf~~G~- 164 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS-KEHHTVVANIDIGGGTTNIAVFDNGE- 164 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh-hhhCCeEEEEEeCCCceeEEEEECCE-
Confidence 46778777788888998888888887433222 12554444332221111 12467899999999999999998554
Q ss_pred EEEEEEecCCCCCchHHH
Q 009246 207 IFEVKATAGDTHLGGEDF 224 (539)
Q Consensus 207 ~~~v~~~~~~~~lGG~~~ 224 (539)
++.+ +..++||+.|
T Consensus 165 ---v~~T-~cl~IGGRLi 178 (473)
T PF06277_consen 165 ---VIDT-ACLDIGGRLI 178 (473)
T ss_pred ---EEEE-EEEeeccEEE
Confidence 2333 3478999865
No 63
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.85 E-value=0.00017 Score=73.07 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=93.2
Q ss_pred ceEEeHHHHHHHHHHHHHHHHHHHhCCCCC-----cEEEEeCCCCCHHHHHHH-HHHHHHcCCceeEeechhHHHHHhcc
Q 009246 100 EKQFAAEEISSMVLIKMREIAEAYLGSTIK-----NAVVTVPAYFNDSQRQAT-KDAGVIAGLNVMRIINEPTAAAIAYG 173 (539)
Q Consensus 100 ~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~l-~~Aa~~aGl~~~~li~Ep~Aaa~~~~ 173 (539)
...++..++++++-+-+.-...+.++.+.. .+|+-||-.|....-+.+ .-.....||....++.|..||.+..+
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 355678888888777666666666665544 589999999998875544 55677889999999999999998877
Q ss_pred cccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHH
Q 009246 174 LDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQ 234 (539)
Q Consensus 174 ~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 234 (539)
+.. -.|+|+|+-+|.++.++-+ +.+..+.-....||.||++.|+-++.+
T Consensus 274 lss---------~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 274 LSS---------ACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred ccc---------eeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHHh
Confidence 653 3899999999999998732 222333344678999999998876654
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.62 E-value=0.0086 Score=62.86 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=53.5
Q ss_pred EEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCC--c-----------
Q 009246 285 YSTITRARFEELNMDL---FRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNG--K----------- 348 (539)
Q Consensus 285 ~~~itr~~~e~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~--~----------- 348 (539)
.+.|.-.++++.+-.. +......+-+++... +-|.++|+|--||+|.++..++...|- .
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 3456666666554333 333444444444432 345799999999999999999877631 1
Q ss_pred ------cccccCCCchhhHhHHHHHHHHHh
Q 009246 349 ------ELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 349 ------~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
+...-.||....|.||.+.+..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 112334899999999998876543
No 65
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.60 E-value=0.026 Score=55.31 Aligned_cols=72 Identities=24% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhh----CCccccccCCCchhhHhHHHHHH
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFF----NGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f----~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
.++++...+.+.+.+...+++....... |+|+||..+...+++.+++.+ +..++..+..|....|.|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 3455556666666677777665543222 999999999977777764433 34445567789999999999986
No 66
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.42 E-value=0.0039 Score=63.93 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=51.7
Q ss_pred eEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHH-hhhCCccccccCCCchhhHh
Q 009246 284 FYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQ-DFFNGKELCKNINPDEAVAY 362 (539)
Q Consensus 284 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~-~~f~~~~v~~~~~p~~aVa~ 362 (539)
-.+.||..+++++. ---..+..-++-.|++++++..+|+.|+|.||++..--+.+.+. -.+|........--..+.-.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al~ 369 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAALA 369 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHHH
Confidence 35689999998753 23345667788899999999999999999999999877777776 34444322222223346666
Q ss_pred HHHHHH
Q 009246 363 GAAVQA 368 (539)
Q Consensus 363 GAa~~a 368 (539)
||.+..
T Consensus 370 GA~~~L 375 (412)
T PF14574_consen 370 GARMAL 375 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776653
No 67
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.17 E-value=0.00097 Score=61.99 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-cCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHH
Q 009246 293 FEELNMDLFRKCMEPVEKCLRDAKMD-KSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 293 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 370 (539)
..++.+-+++.+.-.++..++...-. ...++.|+++||.++++.+.+.+.+.| +.++.... ..++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~-~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPE-VEEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEES-SSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCC-CCchHHHHHHHHHHh
Confidence 45556666666666655555544211 244889999999999999999999999 67776654 488999999999873
No 68
>PRK15027 xylulokinase; Provisional
Probab=96.51 E-value=0.0075 Score=64.39 Aligned_cols=77 Identities=25% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
.+++.+++.+.-.++..++........++.|+++||+++++...+++.+.+ +.++....+.+++.++|||+.|+.-.
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~ 436 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhc
Confidence 334455555544444444333211234789999999999999999999999 67776665677788999999998654
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.43 E-value=0.0096 Score=64.45 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=62.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHH
Q 009246 289 TRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 289 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
+|..+..+++.+++.+.-.++.+++........++.|.++||.++++...+.+.+.+ +.++....+ .++.++|||+.|
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA 488 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAMLG 488 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHHHH
Confidence 466677778888887776666666554322235789999999999999999999999 677766654 457899999999
Q ss_pred HHHh
Q 009246 369 AILS 372 (539)
Q Consensus 369 ~~~~ 372 (539)
+.-.
T Consensus 489 ~~~~ 492 (541)
T TIGR01315 489 AKAA 492 (541)
T ss_pred HHhc
Confidence 8654
No 70
>PLN02669 xylulokinase
Probab=96.40 E-value=0.011 Score=63.89 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 370 (539)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.++.....+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45666666665555555555432 45789999999999999999999999 5677655444 6889999999875
No 71
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.36 E-value=0.07 Score=55.55 Aligned_cols=182 Identities=18% Similarity=0.148 Sum_probs=99.1
Q ss_pred EEEEEEeCCceEEEEEEEEeC---C----EEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCC----C---CCCHHH
Q 009246 185 NVLIFDLGGGTFDVSLLTIEE---G----IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKD----I---SGNPRA 250 (539)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~---~----~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~----~---~~~~~~ 250 (539)
+-|++=+|-+||++.+-+-.. | ....+....-..-||..-.-.+.+||.+...-..... . ......
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~ 348 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESL 348 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHH
Confidence 446777888888888765321 1 1111111212234677666677777766531100000 0 000112
Q ss_pred HHHHHHHHHHHhhhcCCCceEEEEEecccC------Cee-------eEEEEcHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 009246 251 LRRLRTACERAKRTLSSTAQTTIEIDSLYE------GID-------FYSTITRARFEELNMDLFRKCME---PVEKCLRD 314 (539)
Q Consensus 251 ~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~------g~d-------~~~~itr~~~e~~~~~~~~~i~~---~i~~~l~~ 314 (539)
...+..-+++.+...+....- +-++.+.. +.+ +++.=+.+.+-.+....+.-+.- .|-+++++
T Consensus 349 ~~~~~~l~~~~~~~~~l~~~l-~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~ 427 (544)
T COG1069 349 AQRLELLTEAAAAIPPLASGL-HVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED 427 (544)
T ss_pred HHHHHHHHhhHhccCcccCCc-EecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334444445555554332211 11221111 111 11222334344555555555543 33344444
Q ss_pred cCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 315 AKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 315 ~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
.+ -.|+.|+.+||-.+.|.+.+.+.+.. +.++..+ ..+++++.|+|+.|+.-.
T Consensus 428 ~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAa 480 (544)
T COG1069 428 QG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAA 480 (544)
T ss_pred cC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHh
Confidence 44 56999999999999999999999998 5666555 678899999999998655
No 72
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.22 E-value=0.017 Score=55.98 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=52.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEe---echhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCC
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRI---INEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~l---i~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (539)
.++||=-..-..++|..+...-..||==++.- -.|+.-|.-..+.... ..+....++=+|+||||+..+++...+
T Consensus 89 AvIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-Seqr~t~v~NlDIGGGTtN~slFD~Gk- 166 (473)
T COG4819 89 AVIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-SEQRLTRVLNLDIGGGTTNYSLFDAGK- 166 (473)
T ss_pred cEEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-hhhhceEEEEEeccCCccceeeecccc-
Confidence 45677766677777877776666666322211 1233333222221111 123456899999999999999997554
Q ss_pred EEEEEEecCCCCCchHHH
Q 009246 207 IFEVKATAGDTHLGGEDF 224 (539)
Q Consensus 207 ~~~v~~~~~~~~lGG~~~ 224 (539)
+......++||+-+
T Consensus 167 ----v~dTaCLdiGGRLi 180 (473)
T COG4819 167 ----VSDTACLDIGGRLI 180 (473)
T ss_pred ----cccceeeecCcEEE
Confidence 22233367788755
No 73
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=96.19 E-value=0.06 Score=52.39 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=39.6
Q ss_pred CCcceEEEeCC-CcCcHHHHHHHHhhh--CCccccccCCCchhhHhHHHH
Q 009246 320 STVHDVVLVGG-STRIPKVQQLLQDFF--NGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 320 ~~i~~ViLvGG-~s~~p~v~~~l~~~f--~~~~v~~~~~p~~aVa~GAa~ 366 (539)
..++.|+++|| .+..|.+++.+...+ .+.++..+.++...+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45779999999 778999999998765 346778888999999999986
No 74
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.12 E-value=1.6 Score=43.68 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=29.4
Q ss_pred HcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEE
Q 009246 153 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 201 (539)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 201 (539)
..|++ +.+.|+..|+|++-..... ....++++++.+|.|- ..+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~--~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGA--GKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcc--cCCCCcEEEEEeCCcc-EEEEE
Confidence 34665 6799999999886433221 1234678889999875 55555
No 75
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.97 E-value=0.075 Score=51.43 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=59.1
Q ss_pred CcEEEEeCCCCCHHHHHHH-HHHHHHcCCceeEeechhHHHHHh-ccccccc-CCCCCeEEEEEEeCCceEEEEEEEEeC
Q 009246 129 KNAVVTVPAYFNDSQRQAT-KDAGVIAGLNVMRIINEPTAAAIA-YGLDKKA-TSVGEKNVLIFDLGGGTFDVSLLTIEE 205 (539)
Q Consensus 129 ~~~VitVPa~~~~~qr~~l-~~Aa~~aGl~~~~li~Ep~Aaa~~-~~~~~~~-~~~~~~~vlV~D~GggT~Dvsv~~~~~ 205 (539)
.++|+|=|.+--++-.+.+ .-..+.-+++.+.=.+-.+-+|.. |..+... ........+|+|-|-+-|-+.-+-.
T Consensus 94 ~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~-- 171 (400)
T KOG0680|consen 94 HNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK-- 171 (400)
T ss_pred ceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc--
Confidence 4689999987655544444 445666777654333222222222 2222221 1134568999999998777655432
Q ss_pred CEEEEEEecCCCCCchHHHHHHHHHHHH
Q 009246 206 GIFEVKATAGDTHLGGEDFDNRMVNHFV 233 (539)
Q Consensus 206 ~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 233 (539)
+.....+.. ...+||..++..|.+.+.
T Consensus 172 g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred CcchhhceE-EeecchHHHHHHHHHHhh
Confidence 211112222 367999999999988775
No 76
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.89 E-value=0.024 Score=60.75 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAK-MDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
..+++.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 44555666666555555444332 11234788999999999999999999999 6777654 455688999999987654
No 77
>PRK04123 ribulokinase; Provisional
Probab=95.88 E-value=0.022 Score=61.82 Aligned_cols=76 Identities=20% Similarity=0.275 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCC-cCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
++++.+++.+.-.++..++........++.|.++||+ ++++.+.+.+.+.| +.+|... .+.++.|+|||+.|+.-.
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAA 488 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHh
Confidence 4456666666544444444332122347889999999 99999999999999 6777554 456788999999998654
No 78
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.86 E-value=0.025 Score=60.68 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
..+++.+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.| +.++.... ..++.|+|||+.|+.-.
T Consensus 378 ~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~ 455 (504)
T PTZ00294 378 AHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAV 455 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhc
Confidence 344555666665555555543321 1123788999999999999999999999 67776554 55588999999998654
Q ss_pred C
Q 009246 373 G 373 (539)
Q Consensus 373 ~ 373 (539)
|
T Consensus 456 G 456 (504)
T PTZ00294 456 G 456 (504)
T ss_pred C
Confidence 3
No 79
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.82 E-value=0.027 Score=60.10 Aligned_cols=79 Identities=24% Similarity=0.359 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHH
Q 009246 293 FEELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 293 ~e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
.+.+.+.+++.+.-.++..++.... ....++.|+++||.++++.+.+.+.+.| +.++... +..++.++|||+.|+.-
T Consensus 361 ~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~ 438 (481)
T TIGR01312 361 RADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWA 438 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHh
Confidence 3444555555555544444443321 1134789999999999999999999999 6777655 46668899999999865
Q ss_pred hC
Q 009246 372 SG 373 (539)
Q Consensus 372 ~~ 373 (539)
.+
T Consensus 439 ~g 440 (481)
T TIGR01312 439 LG 440 (481)
T ss_pred cC
Confidence 53
No 80
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.79 E-value=0.026 Score=59.99 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
..+++.+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.| +.++....+ .++.++|||+.|+.-.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFYGV 442 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHHhc
Confidence 345566666655444444443321 1224788999999999999999999999 677766555 4678999999998654
No 81
>PRK10331 L-fuculokinase; Provisional
Probab=95.73 E-value=0.029 Score=59.69 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
+++.+.+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.| +.++.... ..++.++|||+.|+.-.
T Consensus 361 ~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 361 GHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGV 438 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhc
Confidence 334556666655555554444321 1235789999999999999999999999 67776554 45688999999998644
No 82
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.71 E-value=0.028 Score=60.16 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
..+++.+++.+.-.++..++.... ....++.|.++||+++++...+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhc
Confidence 344555555555554444444321 1234789999999999999999999999 6777654 445688999999987654
No 83
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.68 E-value=0.033 Score=60.28 Aligned_cols=77 Identities=23% Similarity=0.270 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCC-cCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhC
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGS-TRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
.+++.+++.+.-.++..++........++.|+++||+ ++++.+.+.+.+.| +.+|....+ .++.|.|||+.|+.-.+
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 3455555555444444443332122357899999999 99999999999999 677766554 46889999999886553
No 84
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.63 E-value=0.033 Score=55.08 Aligned_cols=68 Identities=18% Similarity=0.139 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |++...|.+.++-..+..+..|.-+.|.||++
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 333444555555555544445544332 355566666 56888888888544566666678899999986
No 85
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.58 E-value=0.036 Score=59.56 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAK-MDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
+.++..+++.+.-.+...+.... .....++.|.++||.++++...+.+.+.| +.++....++ ++.++|||+.|+.-.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMGDPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKAL 450 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhc
Confidence 34455555555544443332221 01135789999999999999999999999 6777665444 688999999988654
No 86
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.52 E-value=0.15 Score=54.36 Aligned_cols=80 Identities=21% Similarity=0.207 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchH
Q 009246 143 QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 222 (539)
Q Consensus 143 qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~ 222 (539)
....+.++-+..|+++..+=.|-+|-..+.+..... ...+..+|+|+|||++.+++++-. . .......++|..
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~~--~---~~~~~Sl~lG~v 165 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTT--GGADQRLVVDIGGASTELVTGTGA--Q---ATSLFSLSMGCV 165 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhcc--CCCCCEEEEEecCCeeeEEEecCC--c---eeeeeEEeccch
Confidence 455666777778999754444555544444444332 123358999999999999998632 2 222334678888
Q ss_pred HHHHHHH
Q 009246 223 DFDNRMV 229 (539)
Q Consensus 223 ~~d~~l~ 229 (539)
.+.+.+.
T Consensus 166 rl~e~f~ 172 (496)
T PRK11031 166 TWLERYF 172 (496)
T ss_pred HHHHHhc
Confidence 7766554
No 87
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.41 E-value=0.04 Score=58.38 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhC
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
+++.+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.+ +.++... +.++.|+|||+.|+.-.+
T Consensus 361 l~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 361 LARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcC
Confidence 3455555554444444333221 1124789999999999999999999999 6777543 366899999999886543
No 88
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.057 Score=56.47 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCc-CCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKMDK-STVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
+.+....++.+.--++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++..+.+++. ++.|||+.|+.-+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555555544444444443333 56888999999999999999999999 688888888887 9999999998877
Q ss_pred C
Q 009246 373 G 373 (539)
Q Consensus 373 ~ 373 (539)
+
T Consensus 464 ~ 464 (516)
T KOG2517|consen 464 G 464 (516)
T ss_pred C
Confidence 4
No 89
>PLN02295 glycerol kinase
Probab=95.34 E-value=0.046 Score=58.80 Aligned_cols=78 Identities=18% Similarity=0.217 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC------CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHH
Q 009246 293 FEELNMDLFRKCMEPVEKCLRDAKM------DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 293 ~e~~~~~~~~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
-.++++.+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.| +.++... +..++.|+|||+
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~ 455 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAY 455 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHH
Confidence 3445666666666555555554321 1234788999999999999999999999 6777554 455788999999
Q ss_pred HHHHHh
Q 009246 367 QAAILS 372 (539)
Q Consensus 367 ~a~~~~ 372 (539)
.|+.-.
T Consensus 456 ~A~~~~ 461 (512)
T PLN02295 456 AAGLAV 461 (512)
T ss_pred HHHhhc
Confidence 987654
No 90
>PRK10854 exopolyphosphatase; Provisional
Probab=95.34 E-value=0.18 Score=54.21 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEE
Q 009246 109 SSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLI 188 (539)
Q Consensus 109 ~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV 188 (539)
.-..|+.+++.+..+ +..-..+|=|--.-=-.+....+.++-+..|++...+=.|-+|-..+.+..... ...+..+|
T Consensus 65 ~~~~L~~F~~~~~~~-~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l--~~~~~~lv 141 (513)
T PRK10854 65 GLNCLSLFAERLQGF-SPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ--PEKGRKLV 141 (513)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhccc--CCCCCeEE
Confidence 344455555555543 222112222221111223455556666777998744444445544444444332 12356899
Q ss_pred EEeCCceEEEEEEEE
Q 009246 189 FDLGGGTFDVSLLTI 203 (539)
Q Consensus 189 ~D~GggT~Dvsv~~~ 203 (539)
+|+|||++.+++++-
T Consensus 142 vDIGGGStEl~~~~~ 156 (513)
T PRK10854 142 IDIGGGSTELVIGEN 156 (513)
T ss_pred EEeCCCeEEEEEecC
Confidence 999999999999873
No 91
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.24 E-value=0.051 Score=58.58 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAK-MDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
..+++.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.++....++ ++.++|||+.|+.-.
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~ 458 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGA 458 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHh
Confidence 33455555555544444443221 11234789999999999999999999999 6777665544 578999999988655
Q ss_pred C
Q 009246 373 G 373 (539)
Q Consensus 373 ~ 373 (539)
|
T Consensus 459 G 459 (520)
T PRK10939 459 G 459 (520)
T ss_pred C
Confidence 3
No 92
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.01 E-value=0.031 Score=47.34 Aligned_cols=49 Identities=12% Similarity=0.270 Sum_probs=27.7
Q ss_pred EEEEEeCCceEEEEEEEEe-CCEEEEEEecCCC--CCchHHHH--HHHHHHHHH
Q 009246 186 VLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDT--HLGGEDFD--NRMVNHFVQ 234 (539)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~-~~~~~v~~~~~~~--~lGG~~~d--~~l~~~l~~ 234 (539)
++++|+|++++.+.+++.. .+.++++...... .+=|.+|. +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 5799999999999999973 3334444332111 11177777 666665543
No 93
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.94 E-value=0.065 Score=56.97 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKM-DKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
+++-+++.+.-.++..++.... ....++.|.++||+++++...+.+.+.+ +.++... +.++.++|||+.|+.-.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG--PVEASTLGNIGIQLMTL 423 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeC--ChhHHHHHHHHHHHHHc
Confidence 4445555555444444443321 1124788999999999999999999999 6777543 34788999999987654
No 94
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.55 E-value=0.14 Score=52.05 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=47.1
Q ss_pred HHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHH
Q 009246 311 CLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAI 370 (539)
Q Consensus 311 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~ 370 (539)
..+..+.+..+...|+.+||.|+...|-+.|.+.| +.++... +..++.|.|+|+.|+.
T Consensus 432 ~~~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 432 RAEPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred hhccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 33445666667889999999999999999999999 6666544 7778999999999763
No 95
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.36 E-value=0.046 Score=56.45 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCCcCC--cceEEEeCCCcCcHHHHHHHHhhhC-------CccccccCCCchhhHhHHHHHHHHH
Q 009246 304 CMEPVEKCLRDAKMDKST--VHDVVLVGGSTRIPKVQQLLQDFFN-------GKELCKNINPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 304 i~~~i~~~l~~~~~~~~~--i~~ViLvGG~s~~p~v~~~l~~~f~-------~~~v~~~~~p~~aVa~GAa~~a~~~ 371 (539)
+.+++...|.....+... ++.|+|+||+|.+|.+.++|...+- ...|....||-...=+||+.+|+..
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 345566666665333233 8899999999999999999998762 3456777899999999999998753
No 96
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.14 E-value=0.57 Score=48.69 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=61.4
Q ss_pred cEEEEeCCCCCHHHHHHHHH-HHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEE
Q 009246 130 NAVVTVPAYFNDSQRQATKD-AGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIF 208 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~-Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~ 208 (539)
-+++|=+..-...+|+.|.+ .++..|++.+.+=-... +++..+.. ...+..-||+++|..+|-|-.+.- |..
T Consensus 118 PIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~--~~~~~~~liis~g~~~T~vipvld--G~~ 190 (645)
T KOG0681|consen 118 PIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYG--KSSNKSGLIISMGHSATHVIPVLD--GRL 190 (645)
T ss_pred CeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccC--cccCcceEEEecCCCcceeEEEec--Cch
Confidence 46888887777778888866 46777888765422211 11111111 122336799999999998877763 332
Q ss_pred EEEEecCCCCCchHHHHHHHHHHHHHH
Q 009246 209 EVKATAGDTHLGGEDFDNRMVNHFVQE 235 (539)
Q Consensus 209 ~v~~~~~~~~lGG~~~d~~l~~~l~~~ 235 (539)
. +......++||.....-|.+++..+
T Consensus 191 i-l~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 191 I-LKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred h-hhcceeeccCcchHHHHHHHHHhcc
Confidence 2 3334447899988877777766654
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.83 E-value=0.22 Score=53.40 Aligned_cols=76 Identities=28% Similarity=0.297 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHH
Q 009246 289 TRARFEELNMDLFRKCMEPVE---KCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAA 365 (539)
Q Consensus 289 tr~~~e~~~~~~~~~i~~~i~---~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa 365 (539)
++.+| .+.+++.+.-.+. +.|.+. ....++.|.++||++++++..+++.+.+ +.++..+... ++.+.|+|
T Consensus 371 ~~~~l---~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~~-e~~a~g~A 443 (502)
T COG1070 371 TRAHL---ARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEVE-EAGALGGA 443 (502)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCcc-cchHHHHH
Confidence 44444 4444444443333 344433 1244678999999999999999999999 6777655444 45545555
Q ss_pred HHHHHH
Q 009246 366 VQAAIL 371 (539)
Q Consensus 366 ~~a~~~ 371 (539)
..++.-
T Consensus 444 ~~~~~~ 449 (502)
T COG1070 444 ALAAAA 449 (502)
T ss_pred HHHHHH
Confidence 444433
No 98
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.49 E-value=0.16 Score=50.20 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHH
Q 009246 144 RQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 223 (539)
Q Consensus 144 r~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~ 223 (539)
...+.+.-+..|++...+=.|-+|...+.+..... ......+|+|+|||++.++.++- +.+ ......++|...
T Consensus 74 ~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~--~~~---~~~~Sl~lG~vr 146 (285)
T PF02541_consen 74 DEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSL--PPDKNGLVIDIGGGSTELILFEN--GKV---VFSQSLPLGAVR 146 (285)
T ss_dssp HHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHS--TTTSSEEEEEEESSEEEEEEEET--TEE---EEEEEES--HHH
T ss_pred HHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhc--cccCCEEEEEECCCceEEEEEEC--Cee---eEeeeeehHHHH
Confidence 34455556677988754444444443333332221 24556899999999999999873 322 222235788887
Q ss_pred HHHHH
Q 009246 224 FDNRM 228 (539)
Q Consensus 224 ~d~~l 228 (539)
+.+.+
T Consensus 147 l~e~~ 151 (285)
T PF02541_consen 147 LTERF 151 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76655
No 99
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=92.82 E-value=2 Score=42.78 Aligned_cols=71 Identities=23% Similarity=0.393 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCc---cccccCCC----chhhHhHHHHHHHHH
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK---ELCKNINP----DEAVAYGAAVQAAIL 371 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~---~v~~~~~p----~~aVa~GAa~~a~~~ 371 (539)
..++.+...|...+.. ..+.+.|+|.|-.+++|-+++.+++.|... ++ ....+ -...|.|||+.|.-+
T Consensus 242 a~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~gl 316 (343)
T PF07318_consen 242 AMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGL 316 (343)
T ss_pred HHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhh
Confidence 3344444444433332 345778999999999999998888877321 12 11222 135789999998877
Q ss_pred hCC
Q 009246 372 SGE 374 (539)
Q Consensus 372 ~~~ 374 (539)
.+.
T Consensus 317 aGG 319 (343)
T PF07318_consen 317 AGG 319 (343)
T ss_pred hcc
Confidence 763
No 100
>PRK09557 fructokinase; Reviewed
Probab=92.32 E-value=13 Score=36.91 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=30.1
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--------CccccccCCCchhhHhHHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--------GKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--------~~~v~~~~~p~~aVa~GAa~~a 368 (539)
+.+.|+|-||.+..+.+.+.+++.+. ..++..+.-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 35678888888777666555555441 1223344445678899998753
No 101
>PRK09698 D-allose kinase; Provisional
Probab=92.16 E-value=13 Score=36.75 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=31.5
Q ss_pred CcceEEEeCCCcCc-----HHHHHHHHhhhC------CccccccCCCchhhHhHHHHHHH
Q 009246 321 TVHDVVLVGGSTRI-----PKVQQLLQDFFN------GKELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 321 ~i~~ViLvGG~s~~-----p~v~~~l~~~f~------~~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
+.+.|+|-||.+.. +.+++.+++... ..++......+.+.+.|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 35678888887764 345566665431 12344555567789999998864
No 102
>PRK03011 butyrate kinase; Provisional
Probab=92.08 E-value=9.1 Score=38.99 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=36.8
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC---CccccccCCCchhhHhHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN---GKELCKNINPDEAVAYGAAVQ 367 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~---~~~v~~~~~p~~aVa~GAa~~ 367 (539)
++|.|+|.||.+..+.+++.|++.+. ...+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999988663 344555556668999998754
No 103
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=92.05 E-value=0.65 Score=47.16 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcccccc----CCCchhhHhHHHHHHH
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN----INPDEAVAYGAAVQAA 369 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~----~~p~~aVa~GAa~~a~ 369 (539)
+++...+.+=+...|.+.++... .+++.|+++||+++.|+|.+.|++.+++.++... .+|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 34445555555566666666654 2378999999999999999999999987555332 3455545566667766
Q ss_pred HHh
Q 009246 370 ILS 372 (539)
Q Consensus 370 ~~~ 372 (539)
...
T Consensus 337 ~~~ 339 (364)
T PF03702_consen 337 RRL 339 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 104
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.66 E-value=2.1 Score=45.40 Aligned_cols=94 Identities=22% Similarity=0.232 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCC---HHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCC
Q 009246 106 EEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFN---DSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVG 182 (539)
Q Consensus 106 ~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~---~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~ 182 (539)
++.+...+..|+..++...+..+.+ |..|-.... .+.-+.+..+-+..|++.-.+=-|-+|--.+++...... .
T Consensus 51 ~eai~R~~~aL~~f~e~~~~~~~~~-v~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~--~ 127 (492)
T COG0248 51 EEAIERALSALKRFAELLDGFGAEE-VRVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP--R 127 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCE-EEEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC--C
Confidence 3444555555555555444445544 333322222 234567788888889997666666666655555544421 2
Q ss_pred CeEEEEEEeCCceEEEEEEE
Q 009246 183 EKNVLIFDLGGGTFDVSLLT 202 (539)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~ 202 (539)
....+|+|+|||+|.+++..
T Consensus 128 ~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 128 KGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred CCCEEEEEecCCeEEEEEec
Confidence 56789999999999999987
No 105
>PRK14878 UGMP family protein; Provisional
Probab=91.16 E-value=4.2 Score=40.85 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.6
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhh
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFF 345 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f 345 (539)
.++.|+|+||-+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 3678999999999999999999876
No 106
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=91.16 E-value=0.95 Score=44.99 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhc-ccccccCCCCCeEEE
Q 009246 109 SSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAY-GLDKKATSVGEKNVL 187 (539)
Q Consensus 109 ~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~-~~~~~~~~~~~~~vl 187 (539)
....|+.+++.++.+ +..-..+|-|=-..--.++...+.+.-+..|++. .+++..+=|.+.| +..... ... ..+
T Consensus 54 ~~~~l~~f~~~~~~~-~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~--~~~-~~~ 128 (300)
T TIGR03706 54 ALEALKRFAELLRGF-PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTL--PIA-DGL 128 (300)
T ss_pred HHHHHHHHHHHHHhC-CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCC--CCC-CcE
Confidence 334555566655543 3222223333222222334444455556679886 5777666665555 222221 111 249
Q ss_pred EEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHH
Q 009246 188 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 227 (539)
Q Consensus 188 V~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 227 (539)
++|+|||++.++.+.-.. .......++|...+.+.
T Consensus 129 v~DiGGGSte~~~~~~~~-----~~~~~Sl~lG~vrl~e~ 163 (300)
T TIGR03706 129 VVDIGGGSTELILGKDFE-----PGEGVSLPLGCVRLTEQ 163 (300)
T ss_pred EEEecCCeEEEEEecCCC-----EeEEEEEccceEEhHHh
Confidence 999999999999876322 11222345666555544
No 107
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=90.56 E-value=11 Score=38.54 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=55.7
Q ss_pred EEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCcCCcce-EEEeCCCcCcHHHHHHHHhhhCCcccc-ccCCCchhhHhH
Q 009246 287 TITRARFEELNMDLFRKCM-EPVEKCLRDAKMDKSTVHD-VVLVGGSTRIPKVQQLLQDFFNGKELC-KNINPDEAVAYG 363 (539)
Q Consensus 287 ~itr~~~e~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~f~~~~v~-~~~~p~~aVa~G 363 (539)
.-.+.++...++..+++++ ..++..+++.+ ++. +.|.||.+..-..-..|.+..+-.++. .+.--|.-+|.|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4566777777777777664 46666776665 445 999999999999999998874333443 344557789999
Q ss_pred HHHHHHHHh
Q 009246 364 AAVQAAILS 372 (539)
Q Consensus 364 Aa~~a~~~~ 372 (539)
||+++....
T Consensus 207 aA~~~~~~~ 215 (360)
T PF02543_consen 207 AALYAWHEL 215 (360)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999988654
No 108
>PTZ00288 glucokinase 1; Provisional
Probab=90.44 E-value=5.1 Score=41.46 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.5
Q ss_pred CCCEEEEEcCccceeeeEE
Q 009246 6 EGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (539)
...+||+|.|.|++.++++
T Consensus 25 ~~~~~~~DiGgt~~R~~~~ 43 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFA 43 (405)
T ss_pred CCeEEEEEecCCceEEEEE
Confidence 4679999999999998874
No 109
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=90.39 E-value=2.6 Score=38.59 Aligned_cols=30 Identities=40% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHh
Q 009246 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIA 171 (539)
Q Consensus 142 ~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~ 171 (539)
...+.+.++++.+||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 356778899999999999999999998753
No 110
>PLN02920 pantothenate kinase 1
Probab=90.24 E-value=8 Score=39.42 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=36.7
Q ss_pred CCcceEEEeCCCcCcH-HHHHHHHh---hh--CCccccccCCCchhhHhHHHHHH
Q 009246 320 STVHDVVLVGGSTRIP-KVQQLLQD---FF--NGKELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 320 ~~i~~ViLvGG~s~~p-~v~~~l~~---~f--~~~~v~~~~~p~~aVa~GAa~~a 368 (539)
..++.|+++|.+.+.+ ...+.|.- ++ ++.+.....+....-|.||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4688999999999998 66664443 22 34566677788899999998753
No 111
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.97 E-value=1.6 Score=41.27 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEe
Q 009246 113 LIKMREIAEAYLGSTIKNAVVTVPAYFNDS-QRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDL 191 (539)
Q Consensus 113 L~~l~~~a~~~~~~~~~~~VitVPa~~~~~-qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~ 191 (539)
..++.+..+..++.++ .++++-..|... .....++.|. |++ .|.-.+.. . ...+..+.+|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW----------~Ata~~~~-e----~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW----------VATARFLA-E----EIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh----------HHHHHHHH-H----hcCCceEEEec
Confidence 3456666666667665 688888888764 2222233211 111 11101111 1 13456899999
Q ss_pred CCceEEEEEEEE
Q 009246 192 GGGTFDVSLLTI 203 (539)
Q Consensus 192 GggT~Dvsv~~~ 203 (539)
|+.|+|+.-+.-
T Consensus 138 GSTTtDIIPi~~ 149 (330)
T COG1548 138 GSTTTDIIPIKD 149 (330)
T ss_pred CCcccceEeecc
Confidence 999999987763
No 112
>PLN02666 5-oxoprolinase
Probab=89.76 E-value=5.4 Score=47.37 Aligned_cols=77 Identities=10% Similarity=0.114 Sum_probs=49.2
Q ss_pred EcHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHH
Q 009246 288 ITRARFEELNMDLF-RKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 288 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
++-++..+-+..+. ....+.|+......+.++.+. .++..||.+ |...-.|.+.++-..+..+.+|.-..|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34445544444443 344556666666667665542 344455554 56888899998544588888999999999986
Q ss_pred H
Q 009246 367 Q 367 (539)
Q Consensus 367 ~ 367 (539)
-
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 113
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=4.5 Score=37.58 Aligned_cols=64 Identities=14% Similarity=0.261 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCc-cccccCCCchhhHhHHHHH
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-ELCKNINPDEAVAYGAAVQ 367 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v~~~~~p~~aVa~GAa~~ 367 (539)
.++.-+.+.-++++..++ -+.|++|||-+..-.+|+++....... ......|-..++-.|+.+.
T Consensus 237 tvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~MIA 301 (336)
T KOG2708|consen 237 TVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGVMIA 301 (336)
T ss_pred HHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCchHHH
Confidence 344444555566665554 357999999999999999998877322 1223345566777777654
No 114
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=88.55 E-value=30 Score=35.00 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=58.4
Q ss_pred EeHHHHHHHHHHHHHHHHHHH---hC---CCCCcEEEEe-CCCCCHHHHHHH---HHHHHHcCCceeEeechhHHHHHhc
Q 009246 103 FAAEEISSMVLIKMREIAEAY---LG---STIKNAVVTV-PAYFNDSQRQAT---KDAGVIAGLNVMRIINEPTAAAIAY 172 (539)
Q Consensus 103 ~~~~~v~~~~L~~l~~~a~~~---~~---~~~~~~VitV-Pa~~~~~qr~~l---~~Aa~~aGl~~~~li~Ep~Aaa~~~ 172 (539)
+-|++....-.+.|-...++. .+ ..++.+.+|. |..|+. -|--+ +-.+...|.+. .=++--+|-+++-
T Consensus 40 vvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~-LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~ 117 (345)
T PTZ00340 40 FLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAP-LSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMG 117 (345)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhh-HHHHHHHHHHHHHHcCCCE-eecchHHHHHHHH
Confidence 445555555555444333332 22 2455566666 444443 22222 33334445443 3344444444433
Q ss_pred ccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHH
Q 009246 173 GLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 226 (539)
Q Consensus 173 ~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 226 (539)
.+... ...+ |++=+-||+|.+.. ...+.+++++..-|. --|+.||+
T Consensus 118 ~l~~~--~~~P---l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dd-a~Gea~DK 163 (345)
T PTZ00340 118 RLVTG--AENP---VVLYVSGGNTQVIA--YSEHRYRIFGETIDI-AVGNCLDR 163 (345)
T ss_pred hhccC--CCCC---eEEEEeCCceEEEE--ecCCeEEEEEeeccc-chhHHHHH
Confidence 33221 1122 67777888888775 445778999887754 55677774
No 115
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=88.52 E-value=2.2 Score=43.30 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCcccccc----CCCchhhHhHHHHHHHHH
Q 009246 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKN----INPDEAVAYGAAVQAAIL 371 (539)
Q Consensus 297 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~----~~p~~aVa~GAa~~a~~~ 371 (539)
+.-+.+=+...|.+.++... ...+.|+++||+++.|+|.++|++.++ .++... .+|+.-=|..-|++|...
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 33444444455555555433 224689999999999999999999996 333322 345555556666666543
No 116
>PRK09604 UGMP family protein; Validated
Probab=87.62 E-value=34 Score=34.54 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=34.4
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--CccccccC---CCchhhHhHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAAVQ 367 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~ 367 (539)
+++.|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|+|=+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 46789999999999999999998873 23333332 2456788887744
No 117
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=87.45 E-value=52 Score=36.54 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.2
Q ss_pred HHcCCceeEeechhHHHHHh
Q 009246 152 VIAGLNVMRIINEPTAAAIA 171 (539)
Q Consensus 152 ~~aGl~~~~li~Ep~Aaa~~ 171 (539)
+..|++++.++|.-.|+|++
T Consensus 103 ~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 103 RALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHcCCCeEEEEchHHHHHcC
Confidence 34588889999999999987
No 118
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=11 Score=37.73 Aligned_cols=73 Identities=16% Similarity=0.351 Sum_probs=45.8
Q ss_pred cHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhC--CccccccCCCchhhHh
Q 009246 289 TRARFEELNMD----LFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNINPDEAVAY 362 (539)
Q Consensus 289 tr~~~e~~~~~----~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~~p~~aVa~ 362 (539)
..++.++++.. .++-+.+..+++++..+ .+.++++||-+....+|+++++... +.++.. ..++.|--.
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~-p~~~lCtDN 303 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYI-PPLELCTDN 303 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEc-CChHhccch
Confidence 34444445543 44555566666666655 5579999999999999999998762 223322 345555555
Q ss_pred HHHHH
Q 009246 363 GAAVQ 367 (539)
Q Consensus 363 GAa~~ 367 (539)
||-+.
T Consensus 304 aaMIA 308 (342)
T COG0533 304 AAMIA 308 (342)
T ss_pred HHHHH
Confidence 55443
No 119
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=86.10 E-value=2.9 Score=43.30 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=60.0
Q ss_pred EEEcHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCc-CCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhH
Q 009246 286 STITRA-RFEELNMDLFRKCMEPVEKCLRDAKMDK-STVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYG 363 (539)
Q Consensus 286 ~~itr~-~~e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~G 363 (539)
+-|||. .-+.+++..++.+.=...++++....+. ..++.+-+=||.+++.++.+...+.+ +.+|.++. -.|.-|+|
T Consensus 365 ~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlG 442 (499)
T COG0554 365 FGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALG 442 (499)
T ss_pred EeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHH
Confidence 344442 2344566666666655555555432221 25788999999999999999999999 67777764 45688999
Q ss_pred HHHHHHHHhC
Q 009246 364 AAVQAAILSG 373 (539)
Q Consensus 364 Aa~~a~~~~~ 373 (539)
||+.|..-.+
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999887654
No 120
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=85.51 E-value=16 Score=36.44 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.8
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhh
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFF 345 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f 345 (539)
.++.|+|+||-+...++++.|.+.+
T Consensus 258 g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 258 GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999876
No 121
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=85.39 E-value=0.44 Score=40.22 Aligned_cols=58 Identities=26% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcC---CceeE---------eechh-HHHHHh
Q 009246 110 SMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAG---LNVMR---------IINEP-TAAAIA 171 (539)
Q Consensus 110 ~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aG---l~~~~---------li~Ep-~Aaa~~ 171 (539)
+.-|+...+.||+..+.++..+++++ ...+.+.+.++++.++ ++.-. ++..| .|+|++
T Consensus 49 ~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 49 SKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34444445556655455555555555 4555666677777776 66666 77888 787764
No 122
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=85.29 E-value=20 Score=35.88 Aligned_cols=45 Identities=22% Similarity=0.346 Sum_probs=31.8
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--CccccccC---CCchhhHhHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAA 365 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa 365 (539)
.++.|+|+||.+...++++.|.+.+. +.++..+. --|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 46789999999999999999998773 22333222 23556777765
No 123
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=83.52 E-value=7.8 Score=37.89 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=39.0
Q ss_pred cceEEEeCC--CcCcH-HHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhC
Q 009246 322 VHDVVLVGG--STRIP-KVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 322 i~~ViLvGG--~s~~p-~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
...|+|.|- +++.| .+++.|++.|. .++.. +.. ...|.|+|+.|.-+.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V~~-L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLS-CKVLV-LDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhC-CCeEE-ecc-hhhhhhHHHHHHHHhC
Confidence 348999988 99999 99999999994 44433 233 7889999999987764
No 124
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.44 E-value=15 Score=37.01 Aligned_cols=54 Identities=22% Similarity=0.259 Sum_probs=42.4
Q ss_pred cCCcceEEEeCCCcCcHHHHHHHHhhhCCccccc----cCCCchhhHhHHHHHHHHHh
Q 009246 319 KSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCK----NINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 319 ~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~----~~~p~~aVa~GAa~~a~~~~ 372 (539)
....+..+++||+.+.|++.+.|...+++..|.. ..+++..=|.+-|+.|...-
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~l 345 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRTL 345 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHHH
Confidence 4557789999999999999999999998755542 34677777777788777653
No 125
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=83.40 E-value=52 Score=32.98 Aligned_cols=43 Identities=19% Similarity=0.320 Sum_probs=29.7
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--CccccccC---CCchhhHhH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYG 363 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~G 363 (539)
.++.|+|+||-+...++++.|.+.+. +.++..+. --|.+++.|
T Consensus 242 g~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 242 GKKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 36689999999999999999998652 33343322 224456666
No 126
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=82.27 E-value=66 Score=33.30 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCc--eeEeechhHHHHHhcccccccC-----------------------CC----CCeEEEEEEeCCc
Q 009246 144 RQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDKKAT-----------------------SV----GEKNVLIFDLGGG 194 (539)
Q Consensus 144 r~~l~~Aa~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~-----------------------~~----~~~~vlV~D~Ggg 194 (539)
-+.+.++.+.-+++ ++.++|..+++.++-....... .. ....=+++.+=.|
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwG 263 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWG 263 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEeccc
Confidence 45667777777764 6789999999977532211100 00 0011167777777
Q ss_pred eEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHH
Q 009246 195 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRM 228 (539)
Q Consensus 195 T~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 228 (539)
.||.-...+...++.++.......-|=..|+..+
T Consensus 264 sfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~ 297 (466)
T COG5026 264 SFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMS 297 (466)
T ss_pred ccCcceeeccccceeeeeccCCCCcchHHHhhhh
Confidence 7885444444445565555444444444444443
No 127
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=78.79 E-value=3.3 Score=46.17 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=37.0
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--CccccccC---CCchhhHhHHHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAAVQAA 369 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~ 369 (539)
.++.|+|+||..+..++++.|.+.+. +.++..+. --|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998774 23333332 346789999988763
No 128
>PRK00976 hypothetical protein; Provisional
Probab=78.51 E-value=18 Score=36.01 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=38.4
Q ss_pred CcceEEEeCCCcCcH--HHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHhC
Q 009246 321 TVHDVVLVGGSTRIP--KVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p--~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
+.+.|+|-||-++.+ .+.+.+++.+.. . ...-...+.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhC
Confidence 367899999999998 899999888732 2 2223458999999999877643
No 129
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.08 E-value=2.6 Score=46.45 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=27.6
Q ss_pred eEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEE
Q 009246 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 202 (539)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 202 (539)
..+.+-|.|..+........ ..+ +++++|+||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~--~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGL--KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhccc--ccC-CEEEEEcCCcceeeeeee
Confidence 34566677766644332110 122 699999999999999987
No 130
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=77.18 E-value=94 Score=33.23 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=54.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHH-HHHHhhhCCcccc-ccCCCchhhHhHH
Q 009246 287 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQ-QLLQDFFNGKELC-KNINPDEAVAYGA 364 (539)
Q Consensus 287 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~f~~~~v~-~~~~p~~aVa~GA 364 (539)
.....++...++..+++++..+-..+.+.. ..+.+.++||.+..-..- +.+.+-+ ...+. .+--.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 344556666677777777766666555432 156899999999887666 5555544 33343 3344567799999
Q ss_pred HHHHHHHhC
Q 009246 365 AVQAAILSG 373 (539)
Q Consensus 365 a~~a~~~~~ 373 (539)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999876553
No 131
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=76.51 E-value=1.2e+02 Score=32.87 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=37.2
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhC--CccccccC---CCchhhHhHHHHHHHHHh
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFN--GKELCKNI---NPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~--~~~v~~~~---~p~~aVa~GAa~~a~~~~ 372 (539)
.++.|+|+||-+...++++.|.+.+. +.++..+. -.|.+++.|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 36689999999999999999996652 33443332 346788888887655444
No 132
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=75.61 E-value=10 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~ 158 (539)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 56889999999999999999999999875
No 133
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=75.54 E-value=16 Score=36.96 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=35.2
Q ss_pred CCcceEEEeCCCcCc-HHHHHHHH---hhh--CCccccccCCCchhhHhHHHHH
Q 009246 320 STVHDVVLVGGSTRI-PKVQQLLQ---DFF--NGKELCKNINPDEAVAYGAAVQ 367 (539)
Q Consensus 320 ~~i~~ViLvGG~s~~-p~v~~~l~---~~f--~~~~v~~~~~p~~aVa~GAa~~ 367 (539)
..++.|+++|.+-+. |...+.|. +++ +..+.....+...+-|.||.+.
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 357899999998865 77888887 555 3445667779999999999874
No 134
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=75.25 E-value=87 Score=31.11 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeec---hhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCC
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIIN---EPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEG 206 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~---Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~ 206 (539)
...+|-|.--.++-|+-+.+..-.. +++..+.- .=.|-|..|....- ....-+=+|+|-|-|-+-|-.+. .+
T Consensus 108 ~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v--~er~ltG~VidsGdgvThvipva--Eg 182 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQV--GERFLTGIVIDSGDGVTHVIPVA--EG 182 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhh--hhheeeeEEEecCCCeeEEEEee--cc
Confidence 4678999888888888887653221 23322211 11222223322111 11122347999999988877664 23
Q ss_pred EEEEEEecCCCCCchHHHHHHHHHHH
Q 009246 207 IFEVKATAGDTHLGGEDFDNRMVNHF 232 (539)
Q Consensus 207 ~~~v~~~~~~~~lGG~~~d~~l~~~l 232 (539)
. -+.+.-.+..+.|++++.-+...+
T Consensus 183 y-VigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 183 Y-VIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred e-EEeeeeccccccCCchhHHHHHHh
Confidence 2 223334557899999986555544
No 135
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=69.05 E-value=3.3 Score=39.65 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.7
Q ss_pred CEEEEEcCccceeeeE
Q 009246 8 PAIGIDLGTTYSCVGV 23 (539)
Q Consensus 8 ~vvGID~GTt~s~va~ 23 (539)
.++|||+|||++++++
T Consensus 1 y~lgiDiGTts~K~~l 16 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVL 16 (245)
T ss_dssp EEEEEEECSSEEEEEE
T ss_pred CEEEEEEcccceEEEE
Confidence 3799999999999754
No 136
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=68.62 E-value=4.1 Score=32.60 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=14.8
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|.|++++|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~ 18 (99)
T smart00732 2 RVLGLDPGRKGIGVAVV 18 (99)
T ss_pred cEEEEccCCCeEEEEEE
Confidence 37999999999998875
No 137
>PRK07058 acetate kinase; Provisional
Probab=65.82 E-value=42 Score=34.47 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 297 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
++-.+.++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3444455555554444433 3589999999999 99999999998763
No 138
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=65.71 E-value=26 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=31.0
Q ss_pred HHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009246 118 EIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (539)
Q Consensus 118 ~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~ 158 (539)
+..+.+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 6 ~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 6 QIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3334444333 356889999999999999999999999975
No 139
>PRK00047 glpK glycerol kinase; Provisional
Probab=63.90 E-value=5.3 Score=42.87 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=16.2
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
..++|||+|||+++++++
T Consensus 5 ~~~lgiD~GTts~Ka~l~ 22 (498)
T PRK00047 5 KYILALDQGTTSSRAIIF 22 (498)
T ss_pred CEEEEEecCCCceEEEEE
Confidence 479999999999998877
No 140
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=63.54 E-value=5 Score=39.96 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=17.1
Q ss_pred eEEEEEEeCCceEEEEEEE
Q 009246 184 KNVLIFDLGGGTFDVSLLT 202 (539)
Q Consensus 184 ~~vlV~D~GggT~Dvsv~~ 202 (539)
.+++++|+||.|+|++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 3489999999999999986
No 141
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=62.43 E-value=1.7e+02 Score=28.95 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCc-HHHHHHHHhhhCCccccccCCCchhhHhHHHHHHHHHh
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI-PKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~~~~ 372 (539)
.++++....|...++.... ......+.|.||.... ++..+..++.... +|..-+..||.+.|....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhh
Confidence 4566666667776666532 2334579999998887 8888888776632 336677889998886543
No 142
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=61.55 E-value=14 Score=38.76 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=44.4
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCc---eeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEe
Q 009246 134 TVPAYFNDSQRQATKDAGVIAGLN---VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE 204 (539)
Q Consensus 134 tVPa~~~~~qr~~l~~Aa~~aGl~---~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~ 204 (539)
.++......--+.+.+|.+.-|+. +..++|..++..++...... ++++-+=+|.||=-+-+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~------~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP------NCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC------CcEEEEEECCCccceeeeecc
Confidence 344455555677888888888886 67889999988776554332 456666678887666555543
No 143
>PRK10331 L-fuculokinase; Provisional
Probab=61.53 E-value=5.8 Score=42.18 Aligned_cols=18 Identities=17% Similarity=0.025 Sum_probs=16.1
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
+.++|||+|||+++++++
T Consensus 2 ~~~lgID~GTt~~Ka~l~ 19 (470)
T PRK10331 2 DVILVLDCGATNVRAIAV 19 (470)
T ss_pred ceEEEEecCCCceEEEEE
Confidence 368999999999999877
No 144
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=61.35 E-value=6.2 Score=42.37 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.6
Q ss_pred CCCEEEEEcCccceeeeEE
Q 009246 6 EGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (539)
+..++|||+|||++++.++
T Consensus 3 ~~~~lgIDiGTt~~Kavl~ 21 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLF 21 (502)
T ss_pred ccEEEEEEcCCCcEEEEEE
Confidence 6789999999999997665
No 145
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=61.02 E-value=38 Score=33.22 Aligned_cols=49 Identities=24% Similarity=0.190 Sum_probs=32.7
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhCC------ccccccCCCchhhHhHHHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFNG------KELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~------~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
+.+.|+|-|+.+..+.+.+.+++.+.. .++..+...+.+.+.|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 356899988887777666777665532 1233344557788999998753
No 146
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=60.38 E-value=40 Score=34.98 Aligned_cols=97 Identities=21% Similarity=0.286 Sum_probs=58.5
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCC--CCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHhh
Q 009246 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT--HLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKR 263 (539)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~--~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~ 263 (539)
=+.+|+|..|.-.+++....++.--..+..+. ..|.+-+. +|..-. +
T Consensus 3 GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViS-RI~~a~-~----------------------------- 51 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVIS-RISYAL-S----------------------------- 51 (412)
T ss_dssp EEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHH-HHHHHH-------------------------------
T ss_pred EEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHH-HHHHhc-C-----------------------------
Confidence 37899999999999999876644333333332 34554444 332211 1
Q ss_pred hcCCCceEEEEEecccCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHH
Q 009246 264 TLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQ 339 (539)
Q Consensus 264 ~Ls~~~~~~i~i~~~~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 339 (539)
.+.++++-+-+++.+..++.+.+.+++..+++|..++++|=.+..-.+.-
T Consensus 52 --------------------------~~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllG 101 (412)
T PF14574_consen 52 --------------------------PEGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLG 101 (412)
T ss_dssp --------------------------TTHHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT
T ss_pred --------------------------CchHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcC
Confidence 11234455566778888899999999999999999999996665444433
No 147
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=59.93 E-value=6.9 Score=33.75 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.5
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|+..+++|+.
T Consensus 2 riL~lD~G~kriGiAvs 18 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVS 18 (135)
T ss_dssp EEEEEEECSSEEEEEEE
T ss_pred eEEEEEeCCCeEEEEEe
Confidence 58999999999999986
No 148
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=59.75 E-value=1.4e+02 Score=28.71 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=53.9
Q ss_pred CCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEE
Q 009246 125 GSTIKNAVV--TVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLT 202 (539)
Q Consensus 125 ~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~ 202 (539)
+..+..++. .+|.+|+. -+++++.+...|.+. .+++--.||.+..+.+.. ......++++|+|=|.|=..+++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~--v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE--VSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh--hhccCCeEEEEeCCccEEEEEEe
Confidence 455667787 88888653 344555555555555 444444555444443332 13456799999999988877773
Q ss_pred EeCCEEEEEEecCCCCCchHHHH
Q 009246 203 IEEGIFEVKATAGDTHLGGEDFD 225 (539)
Q Consensus 203 ~~~~~~~v~~~~~~~~lGG~~~d 225 (539)
++++.=+.......+-...+.
T Consensus 186 --~~rI~GvfEHHT~~l~~~kL~ 206 (254)
T PF08735_consen 186 --DGRIYGVFEHHTGMLTPEKLE 206 (254)
T ss_pred --CCEEEEEEecccCCCCHHHHH
Confidence 444433333333344444333
No 149
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=59.67 E-value=6.4 Score=42.49 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=16.1
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
..++|||+|||+++++++
T Consensus 3 ~~~lgID~GTts~Ka~l~ 20 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIF 20 (520)
T ss_pred cEEEEEecCCCceEEEEE
Confidence 379999999999998876
No 150
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=59.34 E-value=60 Score=31.41 Aligned_cols=55 Identities=27% Similarity=0.412 Sum_probs=33.1
Q ss_pred CCcceEEEeCCCcCcHHH----HHHHHhhhCC----cccc--ccCCCchhhHhHHHHHHHHHhCC
Q 009246 320 STVHDVVLVGGSTRIPKV----QQLLQDFFNG----KELC--KNINPDEAVAYGAAVQAAILSGE 374 (539)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v----~~~l~~~f~~----~~v~--~~~~p~~aVa~GAa~~a~~~~~~ 374 (539)
...+.|+|.|-++++|-+ ++.|++.|.. ..+. ...-----.|.|||+.|--+.|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 346789999999998765 4455555531 1221 11111224678999888776653
No 151
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=58.66 E-value=6.9 Score=42.04 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=15.7
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 3 ~~lgiDiGTts~Ka~l~ 19 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIF 19 (504)
T ss_pred EEEEEecCCCceEEEEE
Confidence 68999999999998877
No 152
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=57.66 E-value=2e+02 Score=28.41 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=24.0
Q ss_pred CCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCc
Q 009246 155 GLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGG 194 (539)
Q Consensus 155 Gl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~Ggg 194 (539)
|++ +.+-++..|||++-...... ....+++.+-+|-|
T Consensus 107 ~~P-v~veNDan~aalaE~~~g~~--~~~~~~~~i~~gtG 143 (314)
T COG1940 107 GLP-VFVENDANAAALAEAWFGAG--RGIDDVVYITLGTG 143 (314)
T ss_pred CCC-EEEecHHHHHHHHHHHhCCC--CCCCCEEEEEEccc
Confidence 444 57889999999875443321 23446777777765
No 153
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=57.64 E-value=48 Score=32.73 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=31.3
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhCC--------ccccccCCCchhhHhHHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFNG--------KELCKNINPDEAVAYGAAVQA 368 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~--------~~v~~~~~p~~aVa~GAa~~a 368 (539)
+.+.|+|-||.+..+.+.+.|++.+.. .++......+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 356788877777666666666655421 123344456678999999875
No 154
>PLN02362 hexokinase
Probab=57.50 E-value=2e+02 Score=30.86 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeechhHHHHHhccc
Q 009246 141 DSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGL 174 (539)
Q Consensus 141 ~~qr~~l~~Aa~~aGl--~~~~li~Ep~Aaa~~~~~ 174 (539)
..-.+.+.+|...-|+ ++..++|..+|..++..+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 3457888899888887 467899999998775443
No 155
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=57.48 E-value=36 Score=32.97 Aligned_cols=48 Identities=25% Similarity=0.210 Sum_probs=36.1
Q ss_pred cCCcceEEEeCCCcCcHHHHHHHHhhh---CCccccccCCCchhhHhHHHH
Q 009246 319 KSTVHDVVLVGGSTRIPKVQQLLQDFF---NGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 319 ~~~i~~ViLvGG~s~~p~v~~~l~~~f---~~~~v~~~~~p~~aVa~GAa~ 366 (539)
+..+|.|+|+||.++...+-++|.++. ....+....+-.+|.|.||..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 467999999999999999999998765 222333334556788999864
No 156
>PLN02405 hexokinase
Probab=56.64 E-value=2.3e+02 Score=30.37 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCc--eeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEE
Q 009246 141 DSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFD 197 (539)
Q Consensus 141 ~~qr~~l~~Aa~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~D 197 (539)
..-.+.+.+|.+.-|++ +..++|..++..++..+... ...+-+=+|-||=-
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~------~~~iG~IlGTGtNa 257 (497)
T PLN02405 205 QDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP------DVVAAVILGTGTNA 257 (497)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC------CceEEEEEeCCeee
Confidence 34577888998888885 57899999998775544322 23444445666433
No 157
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=56.55 E-value=93 Score=25.65 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=42.4
Q ss_pred CCCcCc-eeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEEecCC--eeEEEEEE
Q 009246 408 NTTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDAN--GILNVSAE 482 (539)
Q Consensus 408 ~~~iP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~d~~--g~l~v~~~ 482 (539)
++.=|. ..+..|....+....+.+.+|.-+.. .+..||++.+. +.....|.. ....|.+... |.|+++..
T Consensus 44 ~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~~-~~~~~~L~~~~~g~l~~~~~ 116 (119)
T cd04036 44 NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGEK-VRVTFSLNPQGKEELEVEFL 116 (119)
T ss_pred CCCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCCc-EEEEEECCCCCCceEEEEEE
Confidence 344454 34455544333344578889975443 56789999987 544344433 6677777663 77777654
No 158
>PTZ00107 hexokinase; Provisional
Probab=55.74 E-value=2.5e+02 Score=29.82 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--eeEeechhHHHHHhccccc
Q 009246 136 PAYFNDSQRQATKDAGVIAGLN--VMRIINEPTAAAIAYGLDK 176 (539)
Q Consensus 136 Pa~~~~~qr~~l~~Aa~~aGl~--~~~li~Ep~Aaa~~~~~~~ 176 (539)
|..-...-.+.+.+|...-|++ ++.++|..+|..++.....
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 3334455678888888888874 6789999999877655443
No 159
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=55.19 E-value=55 Score=23.70 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=26.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~ 158 (539)
...+..|+.++..||..+.+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 35789999999999999999999999875
No 160
>PLN02596 hexokinase-like
Probab=54.88 E-value=2.9e+02 Score=29.47 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEE
Q 009246 141 DSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVS 199 (539)
Q Consensus 141 ~~qr~~l~~Aa~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvs 199 (539)
..-.+.+.+|....|+ +++.++|..+|..++..+... ...+=+=+|.||=-+-
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~------~~~iG~I~GTGtNacY 259 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK------DTVAAVTLGMGTNAAY 259 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC------CeEEEEEEecccceEE
Confidence 3445667888777787 467899999998776544322 2333333666654333
No 161
>PLN02914 hexokinase
Probab=54.81 E-value=2e+02 Score=30.64 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEE
Q 009246 141 DSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSL 200 (539)
Q Consensus 141 ~~qr~~l~~Aa~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv 200 (539)
..-.+.+.+|.+.-|+ ++..++|..+|..++...... ...+-+=+|-||=-+-+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~------~~~iGlIlGTGtNacY~ 260 (490)
T PLN02914 205 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD------DVMVAVILGTGTNACYV 260 (490)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC------CceEEEEEECCeeeEEE
Confidence 3457788888888786 467899999998775544322 23444445666543333
No 162
>PLN02902 pantothenate kinase
Probab=54.73 E-value=71 Score=36.21 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=32.0
Q ss_pred CCcceEEEeCCCcCc-----HHHHHHHHhhh--CCccccccCCCchhhHhHHHHHHH
Q 009246 320 STVHDVVLVGGSTRI-----PKVQQLLQDFF--NGKELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 320 ~~i~~ViLvGG~s~~-----p~v~~~l~~~f--~~~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
..++.|+++|.+-+- ..+...+. +| +..+.....+-...-|.||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 468899999998653 33444444 33 224555556777889999986543
No 163
>PRK15027 xylulokinase; Provisional
Probab=54.19 E-value=8.8 Score=41.00 Aligned_cols=17 Identities=47% Similarity=0.423 Sum_probs=15.1
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 1 ~~lgID~GTts~Ka~l~ 17 (484)
T PRK15027 1 MYIGIDLGTSGVKVILL 17 (484)
T ss_pred CEEEEEecccceEEEEE
Confidence 36999999999998877
No 164
>PRK13331 pantothenate kinase; Reviewed
Probab=53.49 E-value=13 Score=35.66 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred CCCCCCCCEEEEEcCccceeeeEE
Q 009246 1 MAGKGEGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~ 24 (539)
|++.....++.||.|+|+++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f 24 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYF 24 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEE
Confidence 677778889999999999998876
No 165
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=52.75 E-value=2.3e+02 Score=27.87 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=27.7
Q ss_pred HcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEE
Q 009246 153 IAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLL 201 (539)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~ 201 (539)
..|++ +.+.|+-.|||++-..... ....++++.+.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~--~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDE--FTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhcc--ccCCCcEEEEEecCc-eEEEEE
Confidence 34775 6789999998886432211 123457888888875 344444
No 166
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=52.44 E-value=46 Score=33.83 Aligned_cols=67 Identities=18% Similarity=0.081 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCc-cc--cccCCCchhhHhHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGK-EL--CKNINPDEAVAYGAA 365 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~-~v--~~~~~p~~aVa~GAa 365 (539)
+++....++...|-..+...+ .+++.|++.||.+..+.+++.+.+.+.-. ++ ....+-.++.|.||.
T Consensus 271 a~d~~~~~la~~Ia~l~~~l~---g~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 271 ILDAMAYQIAKEIGKMAVVLK---GKVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 333444444444444443321 24789999999999999999999877322 22 222233456677765
No 167
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=51.37 E-value=15 Score=31.84 Aligned_cols=19 Identities=37% Similarity=0.552 Sum_probs=16.5
Q ss_pred CCCEEEEEcCccceeeeEE
Q 009246 6 EGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (539)
++.++|||+|+..+++|+.
T Consensus 3 ~~~iLalD~G~kriGvAv~ 21 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVS 21 (138)
T ss_pred CCcEEEEEeCCCEEEEEEe
Confidence 4559999999999999875
No 168
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=51.09 E-value=68 Score=33.18 Aligned_cols=31 Identities=32% Similarity=0.647 Sum_probs=24.7
Q ss_pred CCeEEEEEEeCCceEEEEEEEEeC-CEEEEEE
Q 009246 182 GEKNVLIFDLGGGTFDVSLLTIEE-GIFEVKA 212 (539)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~-~~~~v~~ 212 (539)
..+.+|++|+||..+-++++++.+ +.+++..
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~ 104 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQ 104 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccccc
Confidence 567899999999999999999984 4444433
No 169
>PRK04123 ribulokinase; Provisional
Probab=50.83 E-value=11 Score=40.86 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.8
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
..++|||+|||+++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~ 20 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLV 20 (548)
T ss_pred cEEEEEecCCCceEEEEE
Confidence 368999999999998776
No 170
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=50.65 E-value=11 Score=40.03 Aligned_cols=17 Identities=18% Similarity=0.018 Sum_probs=15.3
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 2 ~ilgiD~GTss~K~~l~ 18 (465)
T TIGR02628 2 VILVLDCGATNLRAIAI 18 (465)
T ss_pred eEEEEecCCCcEEEEEE
Confidence 47999999999998876
No 171
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=50.22 E-value=11 Score=40.25 Aligned_cols=17 Identities=41% Similarity=0.370 Sum_probs=15.4
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 2 ~~lgiDiGtt~iKa~l~ 18 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVF 18 (493)
T ss_pred eEEEEecCCCceEEEEE
Confidence 58999999999998876
No 172
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=49.86 E-value=6.7 Score=40.85 Aligned_cols=51 Identities=24% Similarity=0.393 Sum_probs=39.1
Q ss_pred cceEEEeCCCcCcHHHHHHHHhhhCC-----cc------cc---ccCCCchhhHhHHHHHHHHHh
Q 009246 322 VHDVVLVGGSTRIPKVQQLLQDFFNG-----KE------LC---KNINPDEAVAYGAAVQAAILS 372 (539)
Q Consensus 322 i~~ViLvGG~s~~p~v~~~l~~~f~~-----~~------v~---~~~~p~~aVa~GAa~~a~~~~ 372 (539)
-+.|++|||+...|.+.+.|++..-+ .+ |. +..||...+=+|||++|..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 56899999999999999999987632 11 11 225788888899999987644
No 173
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=49.60 E-value=14 Score=31.94 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=16.2
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
+.++|||+||-.+++|+.
T Consensus 2 ~~ilalD~G~KrIGvA~s 19 (141)
T COG0816 2 MRILALDVGTKRIGVAVS 19 (141)
T ss_pred ceEEEEecCCceEEEEEe
Confidence 468999999999999986
No 174
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=49.15 E-value=67 Score=33.71 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=24.9
Q ss_pred CCCEEEEEcCccceeeeEEecceEEEecCCceEecHHHHh
Q 009246 6 EGPAIGIDLGTTYSCVGVWTTPSYVGFTDTERLIGDAAKN 45 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~Ps~v~~~~~~~~~G~~A~~ 45 (539)
++.+++||-|||.|++ +.|+.++.+++...+.
T Consensus 4 ~~yIlAiDqGTTssRa--------ivfd~~g~iva~~q~e 35 (499)
T COG0554 4 DKYILAIDQGTTSSRA--------IVFDEDGNIVAIAQRE 35 (499)
T ss_pred ccEEEEEecCCcceeE--------EEECCCCCchhhhhhh
Confidence 6889999999999984 6677777777655443
No 175
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=49.12 E-value=12 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=15.2
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 1 ~~lgiDiGtt~~K~~l~ 17 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLF 17 (505)
T ss_pred CEEEEeccccceEEEEE
Confidence 37999999999999887
No 176
>PLN02295 glycerol kinase
Probab=48.82 E-value=12 Score=40.19 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=15.1
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||+++++++
T Consensus 1 ~vlgID~GTts~Ka~l~ 17 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIY 17 (512)
T ss_pred CEEEEecCCCceEEEEE
Confidence 37999999999998876
No 177
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=48.81 E-value=50 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 009246 116 MREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 158 (539)
Q Consensus 116 l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~ 158 (539)
+++..+.++... .-.++.|+ .+..+|..+.+.|...||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 444444444433 44679999 89999999999999998864
No 178
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=48.17 E-value=13 Score=40.32 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=15.1
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.++|||+|||.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~ 18 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAV 18 (536)
T ss_pred eEEEEecCCCceEEEEE
Confidence 48999999999998765
No 179
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=47.71 E-value=51 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 009246 130 NAVVTVPAYFNDSQRQATKDAGVIAGLNVM 159 (539)
Q Consensus 130 ~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~ 159 (539)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 557788999999999999999999999753
No 180
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=46.78 E-value=13 Score=40.24 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=14.8
Q ss_pred EEEEEcCccceeeeEE
Q 009246 9 AIGIDLGTTYSCVGVW 24 (539)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (539)
++|||+|||+++++++
T Consensus 2 ~lgID~GTts~Ka~l~ 17 (541)
T TIGR01315 2 YIGVDVGTGSARACII 17 (541)
T ss_pred EEEEEecCcCEEEEEE
Confidence 6899999999999877
No 181
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=46.23 E-value=29 Score=32.30 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=24.1
Q ss_pred CCeEEEEEEeCCceEEEEEEEEeCC-EEEE
Q 009246 182 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEV 210 (539)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~-~~~v 210 (539)
..+.+|++|+||.++-++++++.++ .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 4567999999999999999999876 3443
No 182
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=44.63 E-value=17 Score=32.14 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=0.0
Q ss_pred EEEEEcCccceeeeEE
Q 009246 9 AIGIDLGTTYSCVGVW 24 (539)
Q Consensus 9 vvGID~GTt~s~va~~ 24 (539)
++|||.|+++++.|+.
T Consensus 2 ILGIDPGl~~~G~av~ 17 (154)
T cd00529 2 ILGIDPGSRNTGYGVI 17 (154)
T ss_pred EEEEccCcCceEEEEE
No 183
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.02 E-value=1.8e+02 Score=27.98 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=43.5
Q ss_pred eEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHH
Q 009246 159 MRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQE 235 (539)
Q Consensus 159 ~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 235 (539)
..+++.-.||+.....+.. ....||+|+|-|.+-.+++. .+++.-+.......+.-..+-..|.++..-+
T Consensus 207 av~mDskfaav~gal~dpa-----a~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~~Ge 276 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPA-----ADPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFVEGE 276 (342)
T ss_pred EEEEcchhHhhhhcccCcc-----cCceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHHhcc
Confidence 3455555566655555433 33789999999999888876 3445444444445666666665555555443
No 184
>PTZ00297 pantothenate kinase; Provisional
Probab=41.51 E-value=1.9e+02 Score=35.46 Aligned_cols=49 Identities=14% Similarity=0.088 Sum_probs=36.8
Q ss_pred cCCcceEEEeCC-CcCcHHHHHHHHhhh-----CCccccccCCCchhhHhHHHHH
Q 009246 319 KSTVHDVVLVGG-STRIPKVQQLLQDFF-----NGKELCKNINPDEAVAYGAAVQ 367 (539)
Q Consensus 319 ~~~i~~ViLvGG-~s~~p~v~~~l~~~f-----~~~~v~~~~~p~~aVa~GAa~~ 367 (539)
..+++.|+++|+ ....|...+.|.... ++.+.....+....-|.||++.
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 356889999999 566899888887643 2445555667788999999874
No 185
>PLN02377 3-ketoacyl-CoA synthase
Probab=41.24 E-value=90 Score=33.40 Aligned_cols=54 Identities=4% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEE-eCCCcCcHHHHHHHHhhhC
Q 009246 293 FEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVL-VGGSTRIPKVQQLLQDFFN 346 (539)
Q Consensus 293 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 346 (539)
++...++..+-+...++++|+++++++++||.|+. +.+....|.+..+|.+.++
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44445555556677888999999999999999987 5555568999999999994
No 186
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=41.05 E-value=3.2e+02 Score=27.28 Aligned_cols=124 Identities=15% Similarity=0.195 Sum_probs=72.0
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----------C--CCHHHHHHHHHHHHHcCCceeEeechhHHHHHh
Q 009246 104 AAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPA----------Y--FNDSQRQATKDAGVIAGLNVMRIINEPTAAAIA 171 (539)
Q Consensus 104 ~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa----------~--~~~~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~ 171 (539)
+.++++..+|..+... ...+..+||+|+. + |.-. ...+. +..|++.+.+||+=+|.|+.
T Consensus 37 s~~~~l~~~l~~~~~~-----~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~~~l~---~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 37 SFEDALADYLAELDAG-----GPEPDSACIAVAGPVRDGKVRLTNLPWTID-ADELA---QRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp HHHHHHHHHHHHTCHH-----HTCEEEEEEEESS-EETTCEE-SSSCCEEE-HHHCH---CCCT-TCEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhcccC-----CCccceEEEEEecCccCCEEEecCCCcccc-HHHHH---HHhCCceEEEEcccchheec
Confidence 4566666666654111 1234457777763 2 3211 22222 34588999999999998876
Q ss_pred cccccc--------cCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecC-CCCCch-HHHHHHHHHHHHHHHH
Q 009246 172 YGLDKK--------ATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAG-DTHLGG-EDFDNRMVNHFVQEFK 237 (539)
Q Consensus 172 ~~~~~~--------~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~-~~~lGG-~~~d~~l~~~l~~~~~ 237 (539)
...-.. .....+...+|+=.|.| +-++.+--.++...++.+.+ +..+.- .+.+..|.+++.+++.
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~~ 182 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRYG 182 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHCT
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhcC
Confidence 522111 11234667899999876 67777666667666777754 344433 5677888888888763
No 187
>PLN02669 xylulokinase
Probab=41.01 E-value=20 Score=38.95 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCCEEEEEcCccceeeeEE
Q 009246 6 EGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (539)
.+.++|||+||+.++++++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~ 25 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVL 25 (556)
T ss_pred CCeEEEEecccCCeEEEEE
Confidence 4679999999999998877
No 188
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=40.42 E-value=22 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.7
Q ss_pred CEEEEEcCccceeeeE
Q 009246 8 PAIGIDLGTTYSCVGV 23 (539)
Q Consensus 8 ~vvGID~GTt~s~va~ 23 (539)
.++|||.|+|.+++++
T Consensus 2 ~~~GIDiGStttK~Vl 17 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVL 17 (262)
T ss_pred eEEEEEcCcccEEEEE
Confidence 4799999999999754
No 189
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=39.50 E-value=2.6e+02 Score=28.73 Aligned_cols=96 Identities=15% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHH---------hhccCCCCCCHHHHHHHHHHHHHHhhhcCCCceEEEEEecccCCeeeEEEEcHHH
Q 009246 222 EDFDNRMVNHFVQEFK---------RKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRAR 292 (539)
Q Consensus 222 ~~~d~~l~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~~e~~K~~Ls~~~~~~i~i~~~~~g~d~~~~itr~~ 292 (539)
+.+|+.|.+.+.+++. ...+..+....+....+.+..+.+++ ..++.+.
T Consensus 13 D~iD~~iv~Ll~~R~~~~~~ia~~K~~~~~~v~d~~Re~~vl~~~~~~~~~----------------------~~l~~~~ 70 (374)
T PRK11199 13 DEVDKQLLELLAKRLELVAQVGEVKSRHGLPIYVPEREAAMLASRRAEAEA----------------------LGVPPDL 70 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHh----------------------CCCCHHH
Confidence 5689999999987653 23333333333333333222222221 1234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--cCCcceEEEeCCCcCcHH-HHHHHHh
Q 009246 293 FEELNMDLFRKCMEPVEKCLRDAKMD--KSTVHDVVLVGGSTRIPK-VQQLLQD 343 (539)
Q Consensus 293 ~e~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~-v~~~l~~ 343 (539)
++.+++.+++..... =.+.++. ......|.++||.+.|-. +...+++
T Consensus 71 ~~~i~~~i~~~s~~~----q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 71 IEDVLRRVMRESYSS----ENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred HHHHHHHHHHHHHHH----hHHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 566665555554421 1222222 224568999997666533 3344444
No 190
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=39.33 E-value=76 Score=30.91 Aligned_cols=68 Identities=24% Similarity=0.349 Sum_probs=47.1
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHh-hhCCccccccCCCchh
Q 009246 287 TITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQD-FFNGKELCKNINPDEA 359 (539)
Q Consensus 287 ~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~-~f~~~~v~~~~~p~~a 359 (539)
.++.++|++.+.|.+.+|.+.+++.+.+.++. .|-.|+..-|+.. .-+.+.+ -+.-..+..+.+|.++
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~--~vPmi~fakG~g~---~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLA--PVPMILFAKGSGG---ALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCC--CCceEEEEcCcch---HHHHHHhcCCcEEeecccccHHHH
Confidence 68999999999999999999999999988654 3557887777765 2333333 2211233455566555
No 191
>PF13941 MutL: MutL protein
Probab=37.86 E-value=19 Score=37.87 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=23.0
Q ss_pred CcCCcceEEEeCC-CcCcHHHHHHHHhhhC
Q 009246 318 DKSTVHDVVLVGG-STRIPKVQQLLQDFFN 346 (539)
Q Consensus 318 ~~~~i~~ViLvGG-~s~~p~v~~~l~~~f~ 346 (539)
+...++.|+-+|| .++.|.-.+.|+..+.
T Consensus 382 DL~~v~~iIgtGGvL~h~~~~~~il~~~~~ 411 (457)
T PF13941_consen 382 DLTRVKYIIGTGGVLTHSPNPEEILKAALD 411 (457)
T ss_pred ccccCCEEEEeCccccCCCCHHHHHHHHhh
Confidence 3446899999999 7888888888877663
No 192
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=36.68 E-value=46 Score=35.41 Aligned_cols=19 Identities=42% Similarity=0.553 Sum_probs=17.3
Q ss_pred CCCEEEEEcCccceeeeEE
Q 009246 6 EGPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 6 ~~~vvGID~GTt~s~va~~ 24 (539)
...++|||.|||.++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~ 23 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVF 23 (516)
T ss_pred cceEEEEEcCCCceEEEEE
Confidence 5789999999999999887
No 193
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=36.52 E-value=1.1e+02 Score=31.65 Aligned_cols=47 Identities=6% Similarity=0.045 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 297 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
++-.+.++.+.|-....... ..+|.|+++||-+ ..+.|++.+.+.+.
T Consensus 302 ~d~f~yri~k~Iga~~a~L~---g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAALN---GRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 33444455555544444331 3599999999999 99999999998763
No 194
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=36.04 E-value=1.1e+02 Score=29.85 Aligned_cols=68 Identities=26% Similarity=0.244 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCcCC--cceEEEeCCCcC-cHHHHHHHHhhhCCc---cccccCCCchhhHhHHHHHHHHHhC
Q 009246 306 EPVEKCLRDAKMDKST--VHDVVLVGGSTR-IPKVQQLLQDFFNGK---ELCKNINPDEAVAYGAAVQAAILSG 373 (539)
Q Consensus 306 ~~i~~~l~~~~~~~~~--i~~ViLvGG~s~-~p~v~~~l~~~f~~~---~v~~~~~p~~aVa~GAa~~a~~~~~ 373 (539)
..|..++.+......+ .=.|+++||.-. ...+++-........ +-.....|.+.-|.|||+.|+.+.+
T Consensus 246 ~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 246 RHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred HHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 3444455544322111 336999999544 344444332222111 1123347888999999999997753
No 195
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=35.80 E-value=2.2e+02 Score=30.17 Aligned_cols=45 Identities=24% Similarity=0.330 Sum_probs=33.7
Q ss_pred EEEEEEeCCceEEEEEEEEeCCEEEEE-EecCCCCCchHHHHHHHH
Q 009246 185 NVLIFDLGGGTFDVSLLTIEEGIFEVK-ATAGDTHLGGEDFDNRMV 229 (539)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~~~~~v~-~~~~~~~lGG~~~d~~l~ 229 (539)
+=+-+|+|.+|+-..++.+..+++.-. .+....--||+++|.+..
T Consensus 165 YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 165 YGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 447899999999999999988755433 334445569999987654
No 196
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=35.68 E-value=27 Score=31.17 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=16.1
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
+.++|||-|+++++.|+.
T Consensus 2 m~iLGIDPgl~~tG~avi 19 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVI 19 (164)
T ss_pred CEEEEEccccCceeEEEE
Confidence 468999999999999876
No 197
>PLN03173 chalcone synthase; Provisional
Probab=33.88 E-value=1.7e+02 Score=30.29 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
...+=..+.++++|+++++++.+|+.|+.+..+. ..|.+--.|.+.++
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3344456778899999999999999998876544 58999999999984
No 198
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=33.35 E-value=1e+02 Score=30.26 Aligned_cols=44 Identities=11% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCcCCcceEE-EeCCCcCcHHHHHHHHhhhC
Q 009246 303 KCMEPVEKCLRDAKMDKSTVHDVV-LVGGSTRIPKVQQLLQDFFN 346 (539)
Q Consensus 303 ~i~~~i~~~l~~~~~~~~~i~~Vi-LvGG~s~~p~v~~~l~~~f~ 346 (539)
-+...++++|+++++++.+||.++ -+..++-.|.+-.+|.+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 456788899999999999999865 46778999999999999994
No 199
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=5.3e+02 Score=26.14 Aligned_cols=223 Identities=17% Similarity=0.117 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCC---cEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeEeechhHHHHHhcccccccCCC
Q 009246 107 EISSMVLIKMREIAEAYLGSTIK---NAVVTVPAYFNDSQRQATKDAGVIAGL--NVMRIINEPTAAAIAYGLDKKATSV 181 (539)
Q Consensus 107 ~v~~~~L~~l~~~a~~~~~~~~~---~~VitVPa~~~~~qr~~l~~Aa~~aGl--~~~~li~Ep~Aaa~~~~~~~~~~~~ 181 (539)
+.-..-+..+.+.+....+..++ -+.+|+=+...-.-+--+.-|-..|+- +.+.=|.-=+|-|+...+..+ .
T Consensus 80 ~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~---~ 156 (405)
T KOG2707|consen 80 LLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDD---S 156 (405)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccC---C
Confidence 33344455555555544444333 356676666665555555555544432 222334455666666554443 1
Q ss_pred CCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH
Q 009246 182 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERA 261 (539)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 261 (539)
-+-.++.+=+-||.+-+.+.+-- +.++++...-|. .=|+.||.. .+++ +... ++...+..-.++|..
T Consensus 157 v~FPFl~lLvSGGH~llvla~~~-~~~~llg~TvDi-ApGe~lDK~-ar~L--------gl~~--~~e~~~~~g~aie~l 223 (405)
T KOG2707|consen 157 VRFPFLALLVSGGHTLLVLANGV-GDHELLGQTVDI-APGEALDKC-ARRL--------GLLG--HPEDARSGGKAIEHL 223 (405)
T ss_pred cCCceeeEeeeCCceEEEEeccc-cceeeeeccccc-chHHHHHHH-HHHh--------cCCC--CccchhhhhhHHHHH
Confidence 33456777777777777666522 456667666544 345667643 2222 1111 111111111222221
Q ss_pred hhhcCC------------CceEEEEEecccC---------CeeeEEEEcHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCc
Q 009246 262 KRTLSS------------TAQTTIEIDSLYE---------GIDFYSTITRARFE-ELNMDLFRKCMEPVEKCLRDAKMDK 319 (539)
Q Consensus 262 K~~Ls~------------~~~~~i~i~~~~~---------g~d~~~~itr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~ 319 (539)
-..-|. ..+++++...+.. +..-.......+|. ++-...+..+.+....+++.+.+..
T Consensus 224 a~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~l~~ 303 (405)
T KOG2707|consen 224 ANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLLLQP 303 (405)
T ss_pred HhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111111 1122222211100 00000112223332 1222344455555566666666667
Q ss_pred CCcceEEEeCCCcCcHHHHHHHHhhh
Q 009246 320 STVHDVVLVGGSTRIPKVQQLLQDFF 345 (539)
Q Consensus 320 ~~i~~ViLvGG~s~~p~v~~~l~~~f 345 (539)
..+...++.||-++..+|+.+|....
T Consensus 304 ~~~~~lV~SGGVAsN~yir~~le~l~ 329 (405)
T KOG2707|consen 304 KNVKQLVISGGVASNQYIRGALEKLS 329 (405)
T ss_pred cCCceEEEcCCccchHHHHHHHHHHH
Confidence 77889999999999999999998865
No 200
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=33.11 E-value=24 Score=30.13 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.4
Q ss_pred EEEEcCccceeeeEE
Q 009246 10 IGIDLGTTYSCVGVW 24 (539)
Q Consensus 10 vGID~GTt~s~va~~ 24 (539)
+|||+|+..+++|+.
T Consensus 1 laiD~G~kriGvA~~ 15 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQ 15 (130)
T ss_pred CeEccCCCeEEEEEE
Confidence 599999999999875
No 201
>PLN03170 chalcone synthase; Provisional
Probab=32.82 E-value=1.5e+02 Score=30.77 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
...+=..+.++++|+++++++++|+.|+++-.+. ..|.+.-.|.+.++
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3445556788999999999999999988776544 69999999999984
No 202
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=32.69 E-value=2.6e+02 Score=29.62 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCCeEEEEEEeCCceEEEEEEEEeCCE
Q 009246 181 VGEKNVLIFDLGGGTFDVSLLTIEEGI 207 (539)
Q Consensus 181 ~~~~~vlV~D~GggT~Dvsv~~~~~~~ 207 (539)
.+.+.++.+|+||..+-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 345679999999999999999998763
No 203
>PRK13321 pantothenate kinase; Reviewed
Probab=32.48 E-value=34 Score=33.01 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHHHH
Q 009246 290 RARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQAA 369 (539)
Q Consensus 290 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~a~ 369 (539)
+..-+.+-..++......|+..+++.......--.|+++||.+.. +...++. . ...+|+ -|-.|..+.+.
T Consensus 183 ~~T~~ai~~G~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~--l~~~~~~----~---~~~~~~-Lvl~GL~~~~~ 252 (256)
T PRK13321 183 KSTVSSIQSGLYYGYAGLVEGIVARIKAELGGPPRVIATGGFASL--IAKESRC----F---DHVDPD-LLLEGLRILYQ 252 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCcHHH--HhhcCCC----c---cEECCC-cHHHHHHHHHH
Confidence 444555555666666666666555542111111269999998764 3333321 1 112333 56677766653
No 204
>PLN03172 chalcone synthase family protein; Provisional
Probab=32.26 E-value=1.8e+02 Score=30.18 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 298 MDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 298 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
+...+=..+.++++|+++++++.+|+.|+++-.+. ..|.+--.|.+.++
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33445556778899999999999999998776554 69999999999984
No 205
>PRK13318 pantothenate kinase; Reviewed
Probab=30.73 E-value=38 Score=32.69 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=0.0
Q ss_pred CEEEEEcCccceeeeEE
Q 009246 8 PAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 8 ~vvGID~GTt~s~va~~ 24 (539)
.+++||+|.|+++++++
T Consensus 1 MiL~IDIGnT~iK~al~ 17 (258)
T PRK13318 1 MLLAIDVGNTNTVFGLY 17 (258)
T ss_pred CEEEEEECCCcEEEEEE
No 206
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=30.66 E-value=14 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.256 Sum_probs=15.4
Q ss_pred CCEEEEEcCccceeeeEE
Q 009246 7 GPAIGIDLGTTYSCVGVW 24 (539)
Q Consensus 7 ~~vvGID~GTt~s~va~~ 24 (539)
.-++|+|+||+|++++..
T Consensus 57 ~d~~g~~~gt~n~~~~~~ 74 (213)
T PLN00130 57 NDILGTGLGTNNAIREER 74 (213)
T ss_pred cceeccCCCcchHHHHHH
Confidence 458999999999988765
No 207
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=29.94 E-value=80 Score=32.28 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCc
Q 009246 297 NMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI 334 (539)
Q Consensus 297 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 334 (539)
++...+.+...|+++|++++++..+|+.+++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 45566777789999999999999999999999999885
No 208
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=29.85 E-value=44 Score=34.26 Aligned_cols=20 Identities=35% Similarity=0.753 Sum_probs=17.8
Q ss_pred CeEEEEEEeCCceEEEEEEE
Q 009246 183 EKNVLIFDLGGGTFDVSLLT 202 (539)
Q Consensus 183 ~~~vlV~D~GggT~Dvsv~~ 202 (539)
...+.|+|+|||+|.++..-
T Consensus 212 ~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCceEEEEcCCceEEEEEec
Confidence 56799999999999999875
No 209
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=29.71 E-value=36 Score=31.67 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---eeEeechhHHHHHhcc
Q 009246 136 PAYFNDSQRQATKDAGVIAGLN---VMRIINEPTAAAIAYG 173 (539)
Q Consensus 136 Pa~~~~~qr~~l~~Aa~~aGl~---~~~li~Ep~Aaa~~~~ 173 (539)
|..-...-.+.+.+|....|++ ++.++|..+|..++..
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 3333444567778888888876 5678999999877644
No 210
>PLN02854 3-ketoacyl-CoA synthase
Probab=29.23 E-value=1.3e+02 Score=32.26 Aligned_cols=53 Identities=6% Similarity=0.164 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEE-eCCCcCcHHHHHHHHhhhC
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVL-VGGSTRIPKVQQLLQDFFN 346 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViL-vGG~s~~p~v~~~l~~~f~ 346 (539)
++.-++.-.-+...++++|+++++++++||.|+. +.+....|.+..+|.+.++
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 3333333344556778889999999999999987 4555568999999999994
No 211
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=28.55 E-value=26 Score=37.05 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.7
Q ss_pred EEEEcCccceeeeEE
Q 009246 10 IGIDLGTTYSCVGVW 24 (539)
Q Consensus 10 vGID~GTt~s~va~~ 24 (539)
+|||+|||+++++++
T Consensus 1 ~aiD~Gtt~~k~~l~ 15 (454)
T TIGR02627 1 VAVDLGASSGRVMLA 15 (454)
T ss_pred CcEeccCCchheEEE
Confidence 589999999999887
No 212
>PLN03168 chalcone synthase; Provisional
Probab=27.74 E-value=2.1e+02 Score=29.52 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCC-cCcHHHHHHHHhhhC
Q 009246 298 MDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGS-TRIPKVQQLLQDFFN 346 (539)
Q Consensus 298 ~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~f~ 346 (539)
+...+=..+..+++|+++++++++|+.|+++-.+ -.+|.+--.|.+.++
T Consensus 99 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 99 VQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 3444555678899999999999999999875332 357999999999984
No 213
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=27.60 E-value=2e+02 Score=29.80 Aligned_cols=45 Identities=11% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCc-CcHHHHHHHHhhhC
Q 009246 299 DLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGST-RIPKVQQLLQDFFN 346 (539)
Q Consensus 299 ~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s-~~p~v~~~l~~~f~ 346 (539)
-.+.++.+.|-......+ ..+|.|+++||-+ ..+.||+.+.+.+.
T Consensus 308 ~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 308 MYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 334444444444433332 2489999999999 99999999998763
No 214
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=26.97 E-value=1.4e+02 Score=28.77 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=31.0
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAV 366 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~ 366 (539)
.++.|+| |+|..|++.+.+++.++. .+ .-+||.+++|+=+.-
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~-~v-~~IDp~~~la~~~~~ 213 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPE-HV-RLVDSGVHTARRTAW 213 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCC-Cc-EEECCHHHHHHHHHH
Confidence 3566554 999999999999999853 22 446898888776653
No 215
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=25.46 E-value=1.6e+02 Score=24.13 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcce--EEEeCCCcCcHHHHHHHHhhhCC
Q 009246 298 MDLFRKCMEPVEKCLRDAKMDKSTVHD--VVLVGGSTRIPKVQQLLQDFFNG 347 (539)
Q Consensus 298 ~~~~~~i~~~i~~~l~~~~~~~~~i~~--ViLvGG~s~~p~v~~~l~~~f~~ 347 (539)
..-...+++-|+..|+.++.+.++|-. |+|+.-....+.+.+...++|++
T Consensus 32 ~~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~~ 83 (111)
T cd02198 32 EAQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFKE 83 (111)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcCC
Confidence 345566777778888888888777554 56776557888888888999963
No 216
>PLN02914 hexokinase
Probab=25.38 E-value=2.1e+02 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.5
Q ss_pred CCeEEEEEEeCCceEEEEEEEEeC
Q 009246 182 GEKNVLIFDLGGGTFDVSLLTIEE 205 (539)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~ 205 (539)
+.+.+|.+|+||.+|-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999976
No 217
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=25.12 E-value=1.2e+02 Score=31.38 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHH-HHHhccccc
Q 009246 127 TIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTA-AAIAYGLDK 176 (539)
Q Consensus 127 ~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~A-aa~~~~~~~ 176 (539)
.+.++|++-|+.-+..---.+.-||..+|.+.+.-+--..| ||++|+.+.
T Consensus 136 GV~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTet 186 (412)
T PF00815_consen 136 GVKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTET 186 (412)
T ss_dssp T-SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SS
T ss_pred CCCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCC
Confidence 35689999999876666778899999999999999988887 467898643
No 218
>PRK00292 glk glucokinase; Provisional
Probab=24.96 E-value=55 Score=32.58 Aligned_cols=48 Identities=25% Similarity=0.237 Sum_probs=29.5
Q ss_pred HcCCceeEeechhHHHHHhccccc------ccCCC--CCeEEEEEEeCCceEEEEEE
Q 009246 153 IAGLNVMRIINEPTAAAIAYGLDK------KATSV--GEKNVLIFDLGGGTFDVSLL 201 (539)
Q Consensus 153 ~aGl~~~~li~Ep~Aaa~~~~~~~------~~~~~--~~~~vlV~D~GggT~Dvsv~ 201 (539)
..|++.+.+.|+-.|+|++-.... ..... ....++++-+|.| +-.+++
T Consensus 89 ~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 89 ELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 458877899999999998743210 00011 1356888888876 334433
No 219
>PF13941 MutL: MutL protein
Probab=24.94 E-value=1.8e+02 Score=30.77 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=32.4
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEEEEecCCC-CCchHHHHHHHHHHH
Q 009246 186 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT-HLGGEDFDNRMVNHF 232 (539)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~-~lGG~~~d~~l~~~l 232 (539)
+|++|||+.+|-++++....+..++++..... .+.-.|+..-+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 79999999999999999777777777664332 221135555555444
No 220
>PRK14878 UGMP family protein; Provisional
Probab=24.92 E-value=98 Score=31.03 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQ 339 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 339 (539)
..+...+.+...++++|++++++..+||.|.++-|-...+.++-
T Consensus 40 ~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrv 83 (323)
T PRK14878 40 AAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRV 83 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHH
Confidence 34566678889999999999999999999999988777776663
No 221
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.67 E-value=1.2e+02 Score=30.47 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQ 338 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~ 338 (539)
..+...+.+...++++|++++++..+||.|.++-|-...+.++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 3455677888889999999999999999999999877777666
No 222
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=24.36 E-value=3e+02 Score=25.84 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHcCCCcCCcceEEEeCCCcC--cHHHHHHHHhhhCC
Q 009246 304 CMEPVEKCLRDAKMDKSTVHDVVLVGGSTR--IPKVQQLLQDFFNG 347 (539)
Q Consensus 304 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~--~p~v~~~l~~~f~~ 347 (539)
....++++|+++++++.+|+.|++...... .|.....+...++-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 456778899999999999999987765444 58888889888853
No 223
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.27 E-value=3.3e+02 Score=26.83 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=38.6
Q ss_pred CCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q 009246 182 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFK 237 (539)
Q Consensus 182 ~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~ 237 (539)
....++-+|+||.++.++++......+..........-....+-+.+.+.+.+.+.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 59 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLK 59 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHH
Confidence 34678999999999999999987765444444333333335777777777765554
No 224
>PRK00865 glutamate racemase; Provisional
Probab=24.25 E-value=2.3e+02 Score=27.39 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=31.0
Q ss_pred CcceEEEeCCCcCcHHHHHHHHhhhCCccccccCCCchhhHhHHHHH
Q 009246 321 TVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKNINPDEAVAYGAAVQ 367 (539)
Q Consensus 321 ~i~~ViLvGG~s~~p~v~~~l~~~f~~~~v~~~~~p~~aVa~GAa~~ 367 (539)
.++.|+| |++.+|++.+.+++.++. .+ .-+||..++|+-+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~-~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGE-GV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCC-CC-EEECCHHHHHHHHHHH
Confidence 3566655 889999999999998852 22 3358888877766544
No 225
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=24.24 E-value=3.4e+02 Score=22.05 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=30.0
Q ss_pred EEEeCCCCcCc-eeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEe
Q 009246 403 VLIPRNTTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELS 453 (539)
Q Consensus 403 ~ii~~~~~iP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~ 453 (539)
..+.+++.=|. ..+..|....+....+.+.+|.-+.. . +..||.+.+.
T Consensus 38 ~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--~-~~~iG~~~~~ 86 (118)
T cd08681 38 KTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR--K-PDLIGDTEVD 86 (118)
T ss_pred ccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--C-CcceEEEEEe
Confidence 34445555565 34455655444456789999974432 2 6789999887
No 226
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=24.16 E-value=4.1e+02 Score=21.85 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=43.0
Q ss_pred CCCCcCc-eeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCC--C-CcCEEEEEEEecCCeeEEEEEE
Q 009246 407 RNTTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAP--R-GVPQITVCFDIDANGILNVSAE 482 (539)
Q Consensus 407 ~~~~iP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~--~-~~~~i~v~~~~d~~g~l~v~~~ 482 (539)
+++.=|. ..+..|......+..+.|.+|..+.. .....||+..+. +.... . +.. ....+.+...|.+++.+.
T Consensus 44 ~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~--~~~~~iG~~~i~-l~~~~~~~~~~~-~~~w~~l~~~g~i~l~~~ 119 (126)
T cd04043 44 YDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV--GKHDLCGRASLK-LDPKRFGDDGLP-REIWLDLDTQGRLLLRVS 119 (126)
T ss_pred cCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC--CCCceEEEEEEe-cCHHHcCCCCCC-ceEEEEcCCCCeEEEEEE
Confidence 3445555 34555654444456788899876532 245689999887 54321 1 222 456677777887766654
No 227
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.89 E-value=68 Score=30.78 Aligned_cols=49 Identities=22% Similarity=0.348 Sum_probs=33.5
Q ss_pred EEEEEEeCCceEEEEEEEEeC-CEEE----------------------EEEecCCCCCchHHHHHHHHHHHHH
Q 009246 185 NVLIFDLGGGTFDVSLLTIEE-GIFE----------------------VKATAGDTHLGGEDFDNRMVNHFVQ 234 (539)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~-~~~~----------------------v~~~~~~~~lGG~~~d~~l~~~l~~ 234 (539)
++|++|+|.||.|+-.+.-.. +.+. -+...| ...||--...++.+++.+
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc
Confidence 479999999999998876321 0010 122223 468899999999888854
No 228
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=1.8e+02 Score=29.25 Aligned_cols=46 Identities=9% Similarity=0.038 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHH
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQL 340 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~ 340 (539)
...+...+.+..+|+++|++++++..+||.|-.+=|-+..+.++--
T Consensus 45 ~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG 90 (342)
T COG0533 45 LASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVG 90 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHH
Confidence 4456788999999999999999999999999999999988887643
No 229
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=23.55 E-value=1.9e+02 Score=22.67 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=17.2
Q ss_pred EEEEEEeCCceEEEEEEEEeC
Q 009246 185 NVLIFDLGGGTFDVSLLTIEE 205 (539)
Q Consensus 185 ~vlV~D~GggT~Dvsv~~~~~ 205 (539)
.+|.+|+||..+-++++.-.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g 22 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred cEEEEccCCCeEEEEEECCCC
Confidence 378999999999999986544
No 230
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=23.52 E-value=2.6e+02 Score=27.10 Aligned_cols=50 Identities=14% Similarity=-0.021 Sum_probs=34.1
Q ss_pred CCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCchHHHHHHHHH
Q 009246 181 VGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVN 230 (539)
Q Consensus 181 ~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 230 (539)
++...++++|+|..++-+.+.+...+.+.+.......--.|.-+|-.-..
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDFIGAV 70 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeHHHHH
Confidence 35678999999999999888876555555555555445566666633333
No 231
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=23.21 E-value=1.2e+02 Score=25.07 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCc--HHHHHHHHhhhCC
Q 009246 301 FRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI--PKVQQLLQDFFNG 347 (539)
Q Consensus 301 ~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~v~~~l~~~f~~ 347 (539)
-......++++|+++++++.+|+.|..-|-++.. +.=.+.|++.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677999999999999999999998877775 3334457777753
No 232
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=23.17 E-value=1.2e+02 Score=30.06 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHH
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLL 341 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 341 (539)
...+...+.+...++++|++++++..+|+.|.++-|-...+.+|--+
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~ 89 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGA 89 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHH
Confidence 34556778889999999999999999999999999999998888543
No 233
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=22.81 E-value=2.5e+02 Score=22.72 Aligned_cols=72 Identities=17% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCCCcCc-eeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEEec--CCeeEEEEEE
Q 009246 407 RNTTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDID--ANGILNVSAE 482 (539)
Q Consensus 407 ~~~~iP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~d--~~g~l~v~~~ 482 (539)
+++.-|. ..+..|.........+.|.++..+.. .+..||.+.+. +.............|.+. ..|.|+++..
T Consensus 33 ~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~---~d~~iG~~~v~-L~~l~~~~~~~~~w~~L~~~~~G~i~~~~~ 107 (111)
T cd04052 33 KKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR---HDPVLGSVSIS-LNDLIDATSVGQQWFPLSGNGQGRIRISAL 107 (111)
T ss_pred ccCCCCccCCceEEEecCcCCCEEEEEEEECCCC---CCCeEEEEEec-HHHHHhhhhccceeEECCCCCCCEEEEEEE
Confidence 4456666 45555554333345688898876543 56789998886 332211111134556665 6677766643
No 234
>PRK13321 pantothenate kinase; Reviewed
Probab=22.75 E-value=3.3e+02 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=26.6
Q ss_pred EEEEEeCCceEEEEEEEEeCCEEEE-EEecCCCCCchHHHHHHHHHHH
Q 009246 186 VLIFDLGGGTFDVSLLTIEEGIFEV-KATAGDTHLGGEDFDNRMVNHF 232 (539)
Q Consensus 186 vlV~D~GggT~Dvsv~~~~~~~~~v-~~~~~~~~lGG~~~d~~l~~~l 232 (539)
+|.+|+|+.++-+.++. .+ .+.. .....+..-+...+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~-~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD-RLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC-EEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 58899999999999998 32 3221 1222323345555555555544
No 235
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=22.28 E-value=4.2e+02 Score=21.36 Aligned_cols=72 Identities=15% Similarity=0.351 Sum_probs=42.3
Q ss_pred CCCCcCc-eeEEEeeeccCCCCcEEEEEEecCcccccCCcceeEEEEeCCCCCCCCcCEEEEEEEecCC-eeEEEEEE
Q 009246 407 RNTTIPT-KKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDAN-GILNVSAE 482 (539)
Q Consensus 407 ~~~~iP~-~~~~~~~~~~~~q~~~~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~~~~~i~v~~~~d~~-g~l~v~~~ 482 (539)
+++.=|. ..+..|.........+.+.+|..+. ...+..||...+. +.....+.. ....+.+... |.+++.+.
T Consensus 40 ~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~--~~~~~~iG~~~~~-l~~l~~~~~-~~~w~~L~~~~G~~~~~~~ 113 (116)
T cd08376 40 SKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDT--GKKDEFIGRCEID-LSALPREQT-HSLELELEDGEGSLLLLLT 113 (116)
T ss_pred cCCCCCceeEEEEEEecCCCCCEEEEEEEECCC--CCCCCeEEEEEEe-HHHCCCCCc-eEEEEEccCCCcEEEEEEE
Confidence 4455565 3445555443334678889987543 2356789999887 433333332 4566666555 77766543
No 236
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=22.14 E-value=1.5e+02 Score=30.06 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHH
Q 009246 295 ELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLL 341 (539)
Q Consensus 295 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 341 (539)
...+...+.+...++++|++++++..+|+.|-.+-|-...+.++=-+
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~ 90 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGA 90 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHH
Confidence 44567788999999999999999999999999999988777776443
No 237
>PRK13320 pantothenate kinase; Reviewed
Probab=22.00 E-value=72 Score=30.57 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCc
Q 009246 289 TRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRI 334 (539)
Q Consensus 289 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~ 334 (539)
-++.-+.+-..++......|+..+++......+ -.|+++||.+..
T Consensus 172 g~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~vi~TGG~a~~ 216 (244)
T PRK13320 172 GRSTEECIRSGVVWGCVAEIEGLIEAYKSKLPE-LLVILTGGDAPF 216 (244)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHHH
Confidence 344455555566666665555555543211112 369999999774
No 238
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.69 E-value=45 Score=35.44 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=13.7
Q ss_pred EEEEcCccceeeeEE
Q 009246 10 IGIDLGTTYSCVGVW 24 (539)
Q Consensus 10 vGID~GTt~s~va~~ 24 (539)
+|||+|||+++++++
T Consensus 1 lgIDiGtt~ik~~l~ 15 (481)
T TIGR01312 1 LGIDLGTSGVKALLV 15 (481)
T ss_pred CceeecCcceEEEEE
Confidence 699999999999877
No 239
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=21.30 E-value=47 Score=34.76 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=27.3
Q ss_pred HcCCCcCCcceEEEeCC-CcCcH--HHHHHHHh-hhC--CccccccCCCch
Q 009246 314 DAKMDKSTVHDVVLVGG-STRIP--KVQQLLQD-FFN--GKELCKNINPDE 358 (539)
Q Consensus 314 ~~~~~~~~i~~ViLvGG-~s~~p--~v~~~l~~-~f~--~~~v~~~~~p~~ 358 (539)
+.|.+...++.|+-+|| .++.| .....++. .|. +..+..+.+|+.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~ 432 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEY 432 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeE
Confidence 34555667899999999 67777 66666644 342 233334444543
No 240
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=21.07 E-value=9.3e+02 Score=24.87 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCceeEeechhHHHHHhcccccccCCCCCeEEEEEEeCCceEEEEEEEEeCCEEEEEEecCCCCCch
Q 009246 142 SQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 221 (539)
Q Consensus 142 ~qr~~l~~Aa~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~~~vlV~D~GggT~Dvsv~~~~~~~~~v~~~~~~~~lGG 221 (539)
++|...+++++..|-+. .+.+++|+-+|+| ..++.++ +.-.+-.+.|-..+.|
T Consensus 180 S~~~va~~~a~~lgk~~-----------------------~~~~lIvaHLG~G-~Sv~A~~---~GrsvDtsmG~tpleG 232 (388)
T PF00871_consen 180 SYRYVARRAAELLGKDY-----------------------EDLNLIVAHLGSG-ASVCAIK---NGRSVDTSMGFTPLEG 232 (388)
T ss_dssp HHHHHHHHHHHHTTSCG-----------------------GG-EEEEEEESSS-EEEEEEE---TTEEEEESBTSSTTSS
T ss_pred hHHHHHHHHHHHcCCcc-----------------------cccCEEEEEeCCC-cEEEEEE---CCEEEEecCCCCCCCC
Q ss_pred -------HHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHH----------------HHHHHhhhcCCCceEEEEEecc
Q 009246 222 -------EDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRT----------------ACERAKRTLSSTAQTTIEIDSL 278 (539)
Q Consensus 222 -------~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~----------------~~e~~K~~Ls~~~~~~i~i~~~ 278 (539)
-++|-.+.-++.+. ...+...+.+++. +.++....
T Consensus 233 l~m~tRsG~ldp~~~~~l~~~--------~~~s~~e~~~~l~~~sGL~g~sG~s~D~r~i~~~~~~-------------- 290 (388)
T PF00871_consen 233 LMMGTRSGDLDPGVLLYLCRS--------GGMSADELERLLNKESGLLGLSGISNDMREIEARIEE-------------- 290 (388)
T ss_dssp S--SSB--S--THHHHHHHHH--------CT--HHHHHHHHHHSSHHHHHHSSSS-HHHHHHHHHT--------------
T ss_pred CCCCCCCCCCChHHHHHHHHh--------cCCCHHHHHHHHHhccCcEeccCCCCCHHHHHHHHhc--------------
Q ss_pred cCCeeeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcC-cHHHHHHHHhhh
Q 009246 279 YEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTR-IPKVQQLLQDFF 345 (539)
Q Consensus 279 ~~g~d~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~-~p~v~~~l~~~f 345 (539)
..++-..+++-.+.++...|-....... ..+|.|+++||-+. .+.+|+.+.+.+
T Consensus 291 ----------gd~~A~la~d~~~y~i~k~Ig~~~a~l~---G~vDaivfTGGige~~~~vr~~~~~~l 345 (388)
T PF00871_consen 291 ----------GDERAKLALDAFAYQIAKYIGAYAAVLE---GGVDAIVFTGGIGENSALVRERICRKL 345 (388)
T ss_dssp ----------T-HHHHHHHHHHHHHHHHHHHHHHHHHT---SS-SEEEEEHHHHHHTHHHHHHHHCTG
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCEEEEccccccchHHHHHHHHhhc
No 241
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=20.82 E-value=2.1e+02 Score=27.05 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHHHh
Q 009246 294 EELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQD 343 (539)
Q Consensus 294 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 343 (539)
+++.+.+.+.+.+.+++.+++.+ .-.+.|.||++-.+..+...+.
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 34455566677777777776533 3479999999999999888864
No 242
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=20.69 E-value=1.5e+02 Score=29.65 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcceEEEeCCCcCcHHHHHHH
Q 009246 296 LNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLL 341 (539)
Q Consensus 296 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l 341 (539)
..+..-+.+...|+++|++++++..+|+.|.++-|-...+.+|--+
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~ 90 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGV 90 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHH
Confidence 4566778888999999999999999999999999999999887654
No 243
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=20.45 E-value=1.2e+02 Score=31.54 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeEeechhHH-HHHhccccc
Q 009246 127 TIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTA-AAIAYGLDK 176 (539)
Q Consensus 127 ~~~~~VitVPa~~~~~qr~~l~~Aa~~aGl~~~~li~Ep~A-aa~~~~~~~ 176 (539)
.+.++|+.-|+. +..---.+.-||..+|.+.+.-+--..| ||++|+.+.
T Consensus 150 GV~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTet 199 (425)
T PRK00877 150 GVKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTES 199 (425)
T ss_pred CCCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCC
Confidence 456889999986 5455677888999999999999988887 477898654
Done!