Query 009247
Match_columns 539
No_of_seqs 387 out of 1881
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009247.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009247hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4405 GDP dissociation inhib 100.0 6.6E-82 1.4E-86 612.5 22.7 465 19-531 5-513 (547)
2 PF00996 GDI: GDP dissociation 100.0 1.5E-76 3.2E-81 609.2 40.4 429 19-520 1-433 (438)
3 PTZ00363 rab-GDP dissociation 100.0 2.6E-70 5.7E-75 571.1 47.2 430 19-521 1-434 (443)
4 KOG1439 RAB proteins geranylge 100.0 8.5E-62 1.8E-66 474.5 30.1 424 20-517 2-429 (440)
5 COG5044 MRS6 RAB proteins gera 100.0 3.2E-57 7E-62 437.1 30.9 425 20-523 4-432 (434)
6 TIGR02734 crtI_fam phytoene de 100.0 1.2E-27 2.6E-32 258.4 36.6 442 25-526 1-500 (502)
7 TIGR02730 carot_isom carotene 99.9 7E-25 1.5E-29 236.0 35.5 433 23-516 1-491 (493)
8 TIGR00562 proto_IX_ox protopor 99.9 1.9E-24 4.2E-29 231.2 38.6 410 22-514 2-457 (462)
9 COG1233 Phytoene dehydrogenase 99.9 1.2E-25 2.5E-30 240.5 24.7 260 20-336 1-279 (487)
10 TIGR02733 desat_CrtD C-3',4' d 99.9 4.9E-24 1.1E-28 229.6 37.4 429 23-516 2-491 (492)
11 PLN02576 protoporphyrinogen ox 99.9 1.3E-23 2.9E-28 226.6 38.8 413 20-515 10-485 (496)
12 PRK07233 hypothetical protein; 99.9 3.2E-23 6.9E-28 219.9 38.3 408 24-516 1-430 (434)
13 PRK12416 protoporphyrinogen ox 99.9 3.7E-23 8E-28 221.3 35.8 406 23-514 2-458 (463)
14 PRK11883 protoporphyrinogen ox 99.9 1.4E-22 2.9E-27 216.2 36.1 401 24-514 2-449 (451)
15 PLN02612 phytoene desaturase 99.9 6.5E-22 1.4E-26 215.2 39.7 432 22-522 93-553 (567)
16 TIGR02731 phytoene_desat phyto 99.9 8.1E-22 1.7E-26 210.3 37.1 419 24-514 1-453 (453)
17 PRK07208 hypothetical protein; 99.9 4.1E-21 8.9E-26 206.4 39.2 410 20-517 2-461 (479)
18 TIGR02732 zeta_caro_desat caro 99.9 2.4E-21 5.2E-26 206.8 36.0 268 24-342 1-289 (474)
19 COG1232 HemY Protoporphyrinoge 99.9 1.9E-21 4.2E-26 201.0 32.9 400 24-514 2-443 (444)
20 PLN02487 zeta-carotene desatur 99.9 7.9E-20 1.7E-24 196.9 37.8 271 21-342 74-365 (569)
21 TIGR03467 HpnE squalene-associ 99.8 4.6E-18 1E-22 179.3 34.9 276 36-376 1-287 (419)
22 PLN02268 probable polyamine ox 99.8 2.8E-18 6.1E-23 182.1 32.5 275 23-378 1-293 (435)
23 KOG4254 Phytoene desaturase [C 99.8 6.2E-20 1.3E-24 182.8 12.9 71 270-342 255-327 (561)
24 PLN02676 polyamine oxidase 99.8 4.4E-17 9.5E-22 174.3 33.7 285 20-377 24-326 (487)
25 PLN02529 lysine-specific histo 99.8 9.4E-17 2E-21 176.6 35.1 279 21-377 159-447 (738)
26 PLN02328 lysine-specific histo 99.8 9.5E-16 2.1E-20 169.4 31.5 279 21-377 237-527 (808)
27 PLN02568 polyamine oxidase 99.7 1.4E-16 3E-21 171.7 23.7 103 269-376 232-339 (539)
28 COG1231 Monoamine oxidase [Ami 99.7 3.7E-16 8.1E-21 158.3 23.8 222 271-514 201-444 (450)
29 PLN03000 amine oxidase 99.7 4.1E-15 8.9E-20 164.3 30.7 280 21-377 183-471 (881)
30 PLN02976 amine oxidase 99.7 5.2E-14 1.1E-18 159.6 31.2 104 270-378 927-1038(1713)
31 KOG1276 Protoporphyrinogen oxi 99.7 7.2E-14 1.6E-18 139.4 28.2 245 22-323 11-293 (491)
32 PRK13977 myosin-cross-reactive 99.7 1.2E-14 2.7E-19 154.1 23.0 241 19-332 19-287 (576)
33 PF01593 Amino_oxidase: Flavin 99.6 1.2E-14 2.6E-19 153.1 19.5 211 278-513 208-449 (450)
34 KOG0029 Amine oxidase [Seconda 99.6 2.2E-14 4.8E-19 152.2 19.8 112 272-390 212-324 (501)
35 COG2907 Predicted NAD/FAD-bind 99.5 1.2E-12 2.6E-17 127.3 21.9 293 22-378 8-309 (447)
36 COG3349 Uncharacterized conser 99.3 1.8E-11 3.9E-16 126.8 13.3 249 24-331 2-268 (485)
37 KOG0685 Flavin-containing amin 99.2 9.6E-10 2.1E-14 112.0 21.2 108 271-380 215-330 (498)
38 COG2081 Predicted flavoprotein 99.2 1.2E-10 2.5E-15 116.8 13.5 58 272-332 103-161 (408)
39 PF13450 NAD_binding_8: NAD(P) 99.2 3.3E-11 7E-16 92.7 6.6 41 27-67 1-41 (68)
40 TIGR00031 UDP-GALP_mutase UDP- 99.2 9.7E-11 2.1E-15 120.5 12.0 42 23-64 2-43 (377)
41 PF01266 DAO: FAD dependent ox 99.2 1.5E-10 3.2E-15 119.0 10.9 60 271-333 136-198 (358)
42 COG0562 Glf UDP-galactopyranos 99.0 1E-09 2.2E-14 106.3 10.0 100 22-162 1-100 (374)
43 PF03486 HI0933_like: HI0933-l 99.0 1.6E-09 3.4E-14 113.0 10.4 60 271-332 100-160 (409)
44 COG0579 Predicted dehydrogenas 99.0 6.9E-09 1.5E-13 107.4 13.5 61 271-333 142-206 (429)
45 PRK11728 hydroxyglutarate oxid 98.9 1.2E-08 2.6E-13 107.0 14.9 59 271-333 138-199 (393)
46 KOG2820 FAD-dependent oxidored 98.9 5.8E-07 1.2E-11 88.0 23.1 58 280-337 154-212 (399)
47 TIGR03329 Phn_aa_oxid putative 98.9 7.2E-08 1.6E-12 103.2 18.3 58 271-333 172-232 (460)
48 TIGR01377 soxA_mon sarcosine o 98.8 2.2E-08 4.8E-13 104.3 12.3 58 271-332 134-194 (380)
49 PRK08274 tricarballylate dehyd 98.8 8.1E-08 1.8E-12 103.0 16.4 57 274-332 126-186 (466)
50 PRK12845 3-ketosteroid-delta-1 98.7 7E-07 1.5E-11 97.5 20.5 44 18-62 12-55 (564)
51 PRK00711 D-amino acid dehydrog 98.7 3.2E-07 6.9E-12 96.9 17.5 59 271-332 190-251 (416)
52 PRK11101 glpA sn-glycerol-3-ph 98.7 1.3E-07 2.7E-12 103.2 14.6 60 270-332 138-205 (546)
53 PRK11259 solA N-methyltryptoph 98.7 1.5E-07 3.2E-12 98.0 13.7 62 271-336 138-203 (376)
54 PF01946 Thi4: Thi4 family; PD 98.7 1E-08 2.2E-13 95.1 4.2 42 21-62 16-57 (230)
55 TIGR01373 soxB sarcosine oxida 98.7 9.4E-07 2E-11 93.1 18.4 61 271-333 172-235 (407)
56 COG1635 THI4 Ribulose 1,5-bisp 98.7 1.5E-08 3.3E-13 93.3 4.0 42 21-62 29-70 (262)
57 PTZ00383 malate:quinone oxidor 98.7 6.4E-07 1.4E-11 95.9 16.9 60 271-333 199-268 (497)
58 PRK01747 mnmC bifunctional tRN 98.7 3.3E-07 7.1E-12 102.5 15.3 58 271-332 397-457 (662)
59 COG0578 GlpA Glycerol-3-phosph 98.5 7.9E-07 1.7E-11 94.2 12.7 49 17-65 7-55 (532)
60 COG0644 FixC Dehydrogenases (f 98.5 9.1E-08 2E-12 100.4 5.4 43 21-63 2-44 (396)
61 PF06100 Strep_67kDa_ant: Stre 98.5 7.4E-06 1.6E-10 85.3 18.9 249 22-332 2-268 (500)
62 TIGR00292 thiazole biosynthesi 98.5 1.4E-07 3.1E-12 92.3 5.2 41 21-61 20-60 (254)
63 PRK04176 ribulose-1,5-biphosph 98.5 1.9E-07 4E-12 91.7 5.3 41 21-61 24-64 (257)
64 COG3380 Predicted NAD/FAD-depe 98.4 1.9E-07 4.1E-12 88.8 4.8 46 23-68 2-47 (331)
65 PRK10157 putative oxidoreducta 98.4 2.4E-07 5.2E-12 98.1 5.6 40 21-60 4-43 (428)
66 PRK10015 oxidoreductase; Provi 98.4 3E-07 6.4E-12 97.4 5.5 40 21-60 4-43 (429)
67 PRK05249 soluble pyridine nucl 98.4 3.6E-07 7.8E-12 97.9 5.5 45 19-63 2-46 (461)
68 PRK07364 2-octaprenyl-6-methox 98.4 5E-07 1.1E-11 95.4 6.0 45 13-57 9-53 (415)
69 PRK06115 dihydrolipoamide dehy 98.3 3.9E-07 8.5E-12 97.6 4.9 44 20-63 1-44 (466)
70 PRK08010 pyridine nucleotide-d 98.3 4.7E-07 1E-11 96.5 5.1 44 20-63 1-45 (441)
71 PRK07121 hypothetical protein; 98.3 7E-07 1.5E-11 96.4 6.4 42 21-62 19-60 (492)
72 PLN02172 flavin-containing mon 98.3 6.2E-07 1.3E-11 95.5 5.6 44 20-63 8-51 (461)
73 PF01494 FAD_binding_3: FAD bi 98.3 5.2E-07 1.1E-11 92.5 4.7 36 22-57 1-36 (356)
74 PRK07251 pyridine nucleotide-d 98.3 6.5E-07 1.4E-11 95.3 5.1 43 20-62 1-44 (438)
75 PLN00093 geranylgeranyl diphos 98.3 8.6E-07 1.9E-11 94.3 5.7 41 15-55 32-72 (450)
76 TIGR02485 CobZ_N-term precorri 98.3 9.7E-06 2.1E-10 86.1 13.8 61 272-332 116-177 (432)
77 PF12831 FAD_oxidored: FAD dep 98.3 7E-07 1.5E-11 94.6 4.9 40 24-63 1-40 (428)
78 COG2072 TrkA Predicted flavopr 98.3 7.6E-07 1.7E-11 94.4 5.2 50 19-68 5-55 (443)
79 PRK12266 glpD glycerol-3-phosp 98.3 8.6E-07 1.9E-11 95.9 5.6 43 20-62 4-46 (508)
80 TIGR02032 GG-red-SF geranylger 98.2 1E-06 2.2E-11 88.1 5.2 37 23-59 1-37 (295)
81 PRK07494 2-octaprenyl-6-methox 98.2 1.1E-06 2.3E-11 92.0 5.3 40 18-57 3-42 (388)
82 PRK06292 dihydrolipoamide dehy 98.2 1E-06 2.2E-11 94.5 5.2 43 20-63 1-43 (460)
83 KOG2844 Dimethylglycine dehydr 98.2 1.1E-05 2.5E-10 85.4 12.7 58 271-331 176-236 (856)
84 PRK06467 dihydrolipoamide dehy 98.2 1.1E-06 2.4E-11 94.3 5.4 43 20-62 2-44 (471)
85 PTZ00058 glutathione reductase 98.2 1.4E-06 3.1E-11 94.7 6.1 53 10-63 35-88 (561)
86 PRK06116 glutathione reductase 98.2 1E-06 2.3E-11 94.0 4.9 42 21-63 3-44 (450)
87 PRK06370 mercuric reductase; V 98.2 1.3E-06 2.8E-11 93.7 5.5 44 19-63 2-45 (463)
88 PRK13369 glycerol-3-phosphate 98.2 1.5E-06 3.1E-11 94.1 5.7 44 19-62 3-46 (502)
89 PRK08013 oxidoreductase; Provi 98.2 1.3E-06 2.8E-11 91.9 5.1 38 20-57 1-38 (400)
90 PRK09126 hypothetical protein; 98.2 1.4E-06 2.9E-11 91.4 5.0 37 21-57 2-38 (392)
91 TIGR01350 lipoamide_DH dihydro 98.2 1.4E-06 3E-11 93.4 5.1 41 22-63 1-41 (461)
92 PRK06481 fumarate reductase fl 98.2 1.7E-06 3.7E-11 93.6 5.8 42 21-62 60-101 (506)
93 TIGR01424 gluta_reduc_2 glutat 98.2 1.5E-06 3.3E-11 92.6 4.8 41 22-63 2-42 (446)
94 PRK12409 D-amino acid dehydrog 98.2 1.9E-06 4E-11 90.9 5.3 39 23-61 2-40 (410)
95 PRK08849 2-octaprenyl-3-methyl 98.2 1.7E-06 3.7E-11 90.4 4.9 36 20-55 1-36 (384)
96 PRK07818 dihydrolipoamide dehy 98.2 2E-06 4.3E-11 92.3 5.4 43 20-63 2-44 (466)
97 PRK06416 dihydrolipoamide dehy 98.2 1.7E-06 3.8E-11 92.6 4.9 42 21-63 3-44 (462)
98 PRK08773 2-octaprenyl-3-methyl 98.2 2.1E-06 4.4E-11 90.0 5.3 53 279-334 113-166 (392)
99 TIGR01421 gluta_reduc_1 glutat 98.2 1.8E-06 4E-11 92.0 4.9 40 22-62 2-41 (450)
100 PF00890 FAD_binding_2: FAD bi 98.1 1.8E-06 3.8E-11 91.3 4.6 54 277-332 139-197 (417)
101 PF13738 Pyr_redox_3: Pyridine 98.1 1.6E-06 3.5E-11 81.8 3.9 38 26-63 1-39 (203)
102 TIGR02023 BchP-ChlP geranylger 98.1 2.6E-06 5.6E-11 89.2 5.7 32 23-54 1-32 (388)
103 PRK05192 tRNA uridine 5-carbox 98.1 2.1E-06 4.6E-11 92.8 5.1 41 20-60 2-43 (618)
104 PRK08850 2-octaprenyl-6-methox 98.1 2.1E-06 4.5E-11 90.5 4.9 36 19-54 1-36 (405)
105 PLN02463 lycopene beta cyclase 98.1 2.8E-06 6.1E-11 90.0 5.9 47 10-56 16-62 (447)
106 PRK05976 dihydrolipoamide dehy 98.1 2.5E-06 5.4E-11 91.7 5.3 42 21-63 3-44 (472)
107 PLN02661 Putative thiazole syn 98.1 2.5E-06 5.4E-11 86.3 4.8 39 22-60 92-131 (357)
108 PRK06184 hypothetical protein; 98.1 2.8E-06 6.2E-11 92.0 5.5 38 20-57 1-38 (502)
109 TIGR02028 ChlP geranylgeranyl 98.1 2.8E-06 6E-11 89.2 5.2 38 23-60 1-38 (398)
110 PRK07045 putative monooxygenas 98.1 2.7E-06 6E-11 89.0 5.1 54 280-334 107-162 (388)
111 PF00732 GMC_oxred_N: GMC oxid 98.1 2.3E-06 5E-11 86.0 4.2 39 23-61 1-40 (296)
112 TIGR01292 TRX_reduct thioredox 98.1 2.9E-06 6.3E-11 85.1 4.9 40 23-63 1-40 (300)
113 PRK07236 hypothetical protein; 98.1 3.1E-06 6.8E-11 88.5 5.3 37 20-56 4-40 (386)
114 PRK14694 putative mercuric red 98.1 3.2E-06 6.9E-11 90.8 5.3 43 20-63 4-46 (468)
115 PRK13748 putative mercuric red 98.1 2.9E-06 6.3E-11 93.2 5.0 42 21-63 97-138 (561)
116 PRK06327 dihydrolipoamide dehy 98.1 3.6E-06 7.8E-11 90.5 5.4 43 21-63 3-51 (475)
117 PRK08020 ubiF 2-octaprenyl-3-m 98.1 3.2E-06 6.9E-11 88.5 4.9 37 20-56 3-39 (391)
118 TIGR03315 Se_ygfK putative sel 98.1 4.4E-06 9.5E-11 95.5 6.3 44 20-63 535-578 (1012)
119 PRK08163 salicylate hydroxylas 98.1 3.4E-06 7.5E-11 88.4 5.1 38 21-58 3-40 (396)
120 PRK07608 ubiquinone biosynthes 98.1 3.5E-06 7.6E-11 88.1 5.1 37 22-58 5-41 (388)
121 TIGR01988 Ubi-OHases Ubiquinon 98.1 3.2E-06 7E-11 88.1 4.7 53 279-334 106-160 (385)
122 PRK08132 FAD-dependent oxidore 98.1 4.7E-06 1E-10 91.3 6.2 46 20-65 21-68 (547)
123 PRK12831 putative oxidoreducta 98.1 4.8E-06 1E-10 89.1 6.0 45 18-62 136-180 (464)
124 PRK12834 putative FAD-binding 98.1 3.9E-06 8.5E-11 91.8 5.5 42 21-62 3-46 (549)
125 PRK12837 3-ketosteroid-delta-1 98.1 3.7E-06 8.1E-11 91.2 5.2 41 21-62 6-46 (513)
126 TIGR01813 flavo_cyto_c flavocy 98.1 3.7E-06 8.1E-11 89.5 5.1 53 279-332 130-186 (439)
127 COG3573 Predicted oxidoreducta 98.1 4.5E-06 9.9E-11 81.5 5.1 43 19-61 2-46 (552)
128 TIGR01790 carotene-cycl lycope 98.1 4E-06 8.7E-11 87.7 5.2 37 24-60 1-37 (388)
129 COG0665 DadA Glycine/D-amino a 98.1 4.5E-06 9.7E-11 87.1 5.4 59 271-333 145-207 (387)
130 PLN02985 squalene monooxygenas 98.0 5.5E-06 1.2E-10 89.6 6.0 39 18-56 39-77 (514)
131 KOG1399 Flavin-containing mono 98.0 4.1E-06 9E-11 88.0 4.9 45 20-64 4-48 (448)
132 PRK05714 2-octaprenyl-3-methyl 98.0 4E-06 8.6E-11 88.3 4.6 52 280-334 113-165 (405)
133 TIGR03143 AhpF_homolog putativ 98.0 4.5E-06 9.7E-11 91.4 5.2 42 21-63 3-44 (555)
134 KOG1298 Squalene monooxygenase 98.0 4.3E-06 9.4E-11 83.2 4.5 35 20-54 43-77 (509)
135 PRK12842 putative succinate de 98.0 5.1E-06 1.1E-10 91.4 5.6 43 20-62 7-49 (574)
136 PRK06834 hypothetical protein; 98.0 4.9E-06 1.1E-10 89.6 5.3 37 20-56 1-37 (488)
137 PLN02697 lycopene epsilon cycl 98.0 6.5E-06 1.4E-10 88.7 6.2 41 18-58 104-144 (529)
138 PRK06185 hypothetical protein; 98.0 4.7E-06 1E-10 87.8 5.1 37 20-56 4-40 (407)
139 TIGR03364 HpnW_proposed FAD de 98.0 5.3E-06 1.1E-10 86.0 5.3 34 23-56 1-34 (365)
140 COG1148 HdrA Heterodisulfide r 98.0 4.3E-06 9.3E-11 85.6 4.4 44 22-65 124-167 (622)
141 TIGR02053 MerA mercuric reduct 98.0 4.8E-06 1E-10 89.3 5.0 39 23-62 1-39 (463)
142 PRK05732 2-octaprenyl-6-methox 98.0 4.7E-06 1E-10 87.3 4.7 35 20-54 1-38 (395)
143 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 4.9E-06 1.1E-10 87.2 4.6 35 22-56 2-36 (390)
144 PRK14727 putative mercuric red 98.0 5.5E-06 1.2E-10 89.2 5.0 44 20-63 14-57 (479)
145 PRK09853 putative selenate red 98.0 7.6E-06 1.6E-10 93.2 6.2 44 20-63 537-580 (1019)
146 PLN02464 glycerol-3-phosphate 98.0 6.3E-06 1.4E-10 91.2 5.3 41 21-61 70-110 (627)
147 PRK12844 3-ketosteroid-delta-1 98.0 6.4E-06 1.4E-10 90.1 5.2 41 21-61 5-45 (557)
148 PRK07190 hypothetical protein; 98.0 6.6E-06 1.4E-10 88.5 5.2 38 20-57 3-40 (487)
149 COG0492 TrxB Thioredoxin reduc 98.0 6.9E-06 1.5E-10 82.4 4.8 46 20-65 1-46 (305)
150 PRK06183 mhpA 3-(3-hydroxyphen 98.0 8.8E-06 1.9E-10 88.9 6.0 42 20-61 8-49 (538)
151 TIGR01984 UbiH 2-polyprenyl-6- 98.0 6.1E-06 1.3E-10 86.1 4.6 53 279-334 105-159 (382)
152 COG1249 Lpd Pyruvate/2-oxoglut 98.0 7.4E-06 1.6E-10 86.4 5.1 44 20-63 2-45 (454)
153 COG0654 UbiH 2-polyprenyl-6-me 98.0 6.6E-06 1.4E-10 86.1 4.6 55 277-334 102-159 (387)
154 PRK06847 hypothetical protein; 98.0 8.7E-06 1.9E-10 84.7 5.4 51 279-332 107-157 (375)
155 PTZ00052 thioredoxin reductase 98.0 7E-06 1.5E-10 88.7 4.9 51 280-333 223-273 (499)
156 PRK07057 sdhA succinate dehydr 98.0 8.9E-06 1.9E-10 89.6 5.7 46 16-61 6-51 (591)
157 PRK06617 2-octaprenyl-6-methox 97.9 7.2E-06 1.6E-10 85.4 4.6 33 23-55 2-34 (374)
158 PRK12835 3-ketosteroid-delta-1 97.9 8E-06 1.7E-10 89.8 5.0 41 21-61 10-50 (584)
159 PRK06753 hypothetical protein; 97.9 7.8E-06 1.7E-10 85.0 4.7 36 23-58 1-36 (373)
160 PRK06126 hypothetical protein; 97.9 8.6E-06 1.9E-10 89.2 5.2 38 19-56 4-41 (545)
161 PTZ00367 squalene epoxidase; P 97.9 8.9E-06 1.9E-10 88.6 5.2 35 21-55 32-66 (567)
162 PLN02507 glutathione reductase 97.9 9.2E-06 2E-10 87.7 5.2 52 279-333 244-295 (499)
163 PRK08641 sdhA succinate dehydr 97.9 9.1E-06 2E-10 89.5 5.2 41 20-60 1-41 (589)
164 PRK12779 putative bifunctional 97.9 1E-05 2.2E-10 93.1 5.7 43 20-62 304-346 (944)
165 PRK08958 sdhA succinate dehydr 97.9 1.1E-05 2.3E-10 88.9 5.5 43 18-60 3-45 (588)
166 PRK08243 4-hydroxybenzoate 3-m 97.9 8.5E-06 1.8E-10 85.4 4.6 35 22-56 2-36 (392)
167 TIGR01989 COQ6 Ubiquinone bios 97.9 8.7E-06 1.9E-10 86.6 4.6 34 23-56 1-38 (437)
168 PRK12839 hypothetical protein; 97.9 1.2E-05 2.5E-10 88.2 5.6 44 20-63 6-49 (572)
169 TIGR01316 gltA glutamate synth 97.9 1.4E-05 3.1E-10 85.2 6.1 44 19-62 130-173 (449)
170 PRK07538 hypothetical protein; 97.9 9.5E-06 2.1E-10 85.7 4.8 35 23-57 1-35 (413)
171 PRK07843 3-ketosteroid-delta-1 97.9 1.2E-05 2.7E-10 87.9 5.7 42 21-62 6-47 (557)
172 PLN02852 ferredoxin-NADP+ redu 97.9 1.5E-05 3.2E-10 85.0 6.1 48 16-63 20-69 (491)
173 PRK08244 hypothetical protein; 97.9 1E-05 2.2E-10 87.5 4.9 35 22-56 2-36 (493)
174 PRK07803 sdhA succinate dehydr 97.9 1.2E-05 2.6E-10 89.1 5.4 41 20-60 6-46 (626)
175 PRK12769 putative oxidoreducta 97.9 1.4E-05 3.1E-10 89.3 6.0 43 20-62 325-367 (654)
176 KOG2614 Kynurenine 3-monooxyge 97.9 1.3E-05 2.7E-10 81.3 5.0 41 23-63 3-43 (420)
177 PRK07333 2-octaprenyl-6-methox 97.9 1E-05 2.3E-10 85.0 4.5 51 279-332 111-161 (403)
178 PRK11445 putative oxidoreducta 97.9 1.1E-05 2.4E-10 83.3 4.6 35 22-57 1-35 (351)
179 TIGR01789 lycopene_cycl lycope 97.9 1.2E-05 2.7E-10 83.3 5.0 37 24-60 1-39 (370)
180 PRK07804 L-aspartate oxidase; 97.9 1.3E-05 2.8E-10 87.5 5.1 40 21-60 15-54 (541)
181 PRK06452 sdhA succinate dehydr 97.9 1.4E-05 3E-10 87.7 5.4 41 21-61 4-44 (566)
182 PRK12809 putative oxidoreducta 97.9 1.8E-05 4E-10 88.1 6.2 46 17-62 305-350 (639)
183 TIGR01423 trypano_reduc trypan 97.9 1.4E-05 3E-10 85.9 5.1 53 279-333 231-283 (486)
184 PRK12810 gltD glutamate syntha 97.9 1.8E-05 3.8E-10 85.0 5.8 43 20-62 141-183 (471)
185 TIGR01320 mal_quin_oxido malat 97.9 1.2E-05 2.6E-10 86.3 4.5 62 270-333 166-235 (483)
186 PRK06134 putative FAD-binding 97.9 2E-05 4.3E-10 86.8 6.2 44 20-63 10-53 (581)
187 PRK05257 malate:quinone oxidor 97.9 1.4E-05 3.1E-10 85.8 4.9 43 20-62 3-47 (494)
188 PF05834 Lycopene_cycl: Lycope 97.9 1.5E-05 3.2E-10 83.0 4.9 34 24-57 1-36 (374)
189 PLN02546 glutathione reductase 97.8 1.6E-05 3.4E-10 86.7 5.2 43 21-63 78-129 (558)
190 PRK07588 hypothetical protein; 97.8 1.5E-05 3.2E-10 83.5 4.7 34 23-56 1-34 (391)
191 PTZ00139 Succinate dehydrogena 97.8 1.8E-05 3.9E-10 87.6 5.4 59 273-332 159-223 (617)
192 PRK12775 putative trifunctiona 97.8 1.9E-05 4.2E-10 91.7 5.8 43 20-62 428-470 (1006)
193 PRK09078 sdhA succinate dehydr 97.8 1.8E-05 3.9E-10 87.3 5.4 53 279-332 149-206 (598)
194 PF00743 FMO-like: Flavin-bind 97.8 1.6E-05 3.6E-10 85.9 4.9 41 23-63 2-42 (531)
195 PRK12778 putative bifunctional 97.8 2.1E-05 4.6E-10 89.3 6.0 43 20-62 429-471 (752)
196 TIGR01372 soxA sarcosine oxida 97.8 2E-05 4.2E-10 91.9 5.7 43 21-63 162-204 (985)
197 PRK06175 L-aspartate oxidase; 97.8 1.8E-05 3.8E-10 84.0 4.8 58 273-332 121-183 (433)
198 PRK15317 alkyl hydroperoxide r 97.8 2E-05 4.4E-10 85.6 5.3 41 20-62 209-249 (517)
199 PRK12843 putative FAD-binding 97.8 2.7E-05 5.9E-10 85.6 6.4 42 21-62 15-56 (578)
200 PRK02106 choline dehydrogenase 97.8 2.1E-05 4.6E-10 86.4 5.2 37 20-56 3-40 (560)
201 PRK05335 tRNA (uracil-5-)-meth 97.8 2.2E-05 4.7E-10 81.5 4.9 37 23-59 3-39 (436)
202 TIGR02462 pyranose_ox pyranose 97.8 2.2E-05 4.8E-10 84.6 5.1 39 23-61 1-39 (544)
203 PRK05868 hypothetical protein; 97.8 2.3E-05 5.1E-10 81.5 5.0 35 23-57 2-36 (372)
204 PLN00128 Succinate dehydrogena 97.8 2.2E-05 4.7E-10 87.0 5.0 53 279-332 187-244 (635)
205 PRK11749 dihydropyrimidine deh 97.8 3.3E-05 7.1E-10 82.7 6.2 43 20-62 138-180 (457)
206 PRK07395 L-aspartate oxidase; 97.8 2.4E-05 5.1E-10 85.5 5.1 41 20-61 7-47 (553)
207 PRK05945 sdhA succinate dehydr 97.8 2E-05 4.4E-10 86.6 4.6 59 272-332 127-191 (575)
208 PRK07573 sdhA succinate dehydr 97.8 2.3E-05 4.9E-10 87.0 5.0 40 21-60 34-73 (640)
209 PF06039 Mqo: Malate:quinone o 97.8 0.00057 1.2E-08 70.8 14.4 61 272-334 170-240 (488)
210 PRK10262 thioredoxin reductase 97.8 2.6E-05 5.5E-10 79.5 4.8 42 21-63 5-46 (321)
211 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.4E-05 5.3E-10 81.6 4.6 38 24-61 2-39 (433)
212 PRK08626 fumarate reductase fl 97.7 2.7E-05 5.9E-10 86.7 5.1 52 279-332 158-214 (657)
213 TIGR01812 sdhA_frdA_Gneg succi 97.7 2.7E-05 5.9E-10 85.6 5.0 51 280-332 130-185 (566)
214 PRK06475 salicylate hydroxylas 97.7 2.8E-05 6.1E-10 81.7 4.8 35 23-57 3-37 (400)
215 PLN02815 L-aspartate oxidase 97.7 3.7E-05 7.9E-10 84.5 5.7 40 21-61 28-67 (594)
216 TIGR01318 gltD_gamma_fam gluta 97.7 4.2E-05 9E-10 82.0 6.1 43 20-62 139-181 (467)
217 PRK06069 sdhA succinate dehydr 97.7 3.1E-05 6.6E-10 85.3 5.2 41 21-61 4-47 (577)
218 PTZ00153 lipoamide dehydrogena 97.7 3.2E-05 6.9E-10 85.6 5.2 42 22-63 116-158 (659)
219 PRK08294 phenol 2-monooxygenas 97.7 3E-05 6.5E-10 86.0 5.0 46 20-65 30-78 (634)
220 PRK06996 hypothetical protein; 97.7 3.1E-05 6.8E-10 81.3 4.8 39 18-56 7-49 (398)
221 COG3075 GlpB Anaerobic glycero 97.7 2.9E-05 6.4E-10 76.0 4.1 56 280-337 259-317 (421)
222 TIGR00551 nadB L-aspartate oxi 97.7 3.4E-05 7.4E-10 83.2 5.1 52 279-332 128-183 (488)
223 PTZ00306 NADH-dependent fumara 97.7 4E-05 8.6E-10 90.7 6.0 42 21-62 408-449 (1167)
224 TIGR03219 salicylate_mono sali 97.7 3.5E-05 7.6E-10 81.4 5.0 36 24-59 2-38 (414)
225 PLN02927 antheraxanthin epoxid 97.7 3.4E-05 7.3E-10 84.9 4.8 36 20-55 79-114 (668)
226 PRK13339 malate:quinone oxidor 97.7 3.8E-05 8.3E-10 82.2 4.9 42 21-62 5-48 (497)
227 TIGR03140 AhpF alkyl hydropero 97.7 4.1E-05 9E-10 83.1 5.3 41 20-62 210-250 (515)
228 PRK12814 putative NADPH-depend 97.7 4.7E-05 1E-09 84.9 5.8 42 21-62 192-233 (652)
229 PRK08071 L-aspartate oxidase; 97.7 3.9E-05 8.4E-10 83.1 4.9 40 21-61 2-41 (510)
230 PRK06854 adenylylsulfate reduc 97.7 4.2E-05 9E-10 84.6 5.0 39 21-59 10-50 (608)
231 PF01134 GIDA: Glucose inhibit 97.7 3.4E-05 7.4E-10 79.3 4.0 51 280-332 96-146 (392)
232 TIGR01438 TGR thioredoxin and 97.6 4.8E-05 1E-09 81.8 5.0 42 22-63 2-51 (484)
233 PRK05329 anaerobic glycerol-3- 97.6 5.1E-05 1.1E-09 79.7 4.9 51 280-332 260-312 (422)
234 PRK06263 sdhA succinate dehydr 97.6 5.2E-05 1.1E-09 82.9 4.8 53 279-332 134-191 (543)
235 PRK08275 putative oxidoreducta 97.6 5.6E-05 1.2E-09 82.9 4.9 53 279-332 137-194 (554)
236 KOG2853 Possible oxidoreductas 97.6 5.2E-05 1.1E-09 74.5 4.1 46 21-66 85-134 (509)
237 PRK09231 fumarate reductase fl 97.6 5.7E-05 1.2E-09 83.1 4.8 41 21-61 3-45 (582)
238 TIGR01317 GOGAT_sm_gam glutama 97.6 8.6E-05 1.9E-09 79.9 6.0 42 21-62 142-183 (485)
239 TIGR00275 flavoprotein, HI0933 97.6 4E-05 8.6E-10 80.5 3.1 65 272-340 97-163 (400)
240 PRK08401 L-aspartate oxidase; 97.6 6.9E-05 1.5E-09 80.4 4.9 50 279-332 120-169 (466)
241 COG1053 SdhA Succinate dehydro 97.6 7.6E-05 1.7E-09 81.0 5.2 45 18-62 2-46 (562)
242 TIGR01176 fum_red_Fp fumarate 97.6 7E-05 1.5E-09 82.3 4.7 40 22-61 3-44 (580)
243 PRK08205 sdhA succinate dehydr 97.5 8.4E-05 1.8E-09 81.9 5.2 53 279-332 140-200 (583)
244 PRK09077 L-aspartate oxidase; 97.5 8.2E-05 1.8E-09 81.2 4.9 40 20-60 6-45 (536)
245 PRK06912 acoL dihydrolipoamide 97.5 8.5E-05 1.8E-09 79.5 5.0 39 24-63 2-40 (458)
246 KOG0399 Glutamate synthase [Am 97.5 0.00011 2.4E-09 81.7 5.1 53 10-63 1774-1826(2142)
247 PF07992 Pyr_redox_2: Pyridine 97.5 0.00012 2.5E-09 68.9 4.7 33 24-56 1-33 (201)
248 PF00070 Pyr_redox: Pyridine n 97.5 0.00019 4E-09 57.0 5.1 35 24-58 1-35 (80)
249 COG2303 BetA Choline dehydroge 97.5 9.5E-05 2.1E-09 80.5 4.2 35 20-54 5-39 (542)
250 PRK12770 putative glutamate sy 97.5 0.00015 3.3E-09 74.8 5.5 41 22-62 18-58 (352)
251 PRK12771 putative glutamate sy 97.5 0.00018 3.9E-09 79.1 6.3 42 21-62 136-177 (564)
252 PRK06567 putative bifunctional 97.4 0.00019 4.1E-09 81.2 6.2 41 20-60 381-421 (1028)
253 COG0493 GltD NADPH-dependent g 97.4 0.00018 3.9E-09 76.1 5.4 44 20-63 121-164 (457)
254 TIGR00136 gidA glucose-inhibit 97.4 0.00018 4E-09 77.9 5.0 38 23-60 1-38 (617)
255 PRK07846 mycothione reductase; 97.4 0.00017 3.7E-09 77.0 4.7 40 22-64 1-40 (451)
256 TIGR03452 mycothione_red mycot 97.4 0.00017 3.7E-09 77.0 4.7 39 22-63 2-40 (452)
257 TIGR02061 aprA adenosine phosp 97.3 0.0002 4.3E-09 78.9 5.0 34 24-57 1-38 (614)
258 KOG2415 Electron transfer flav 97.3 0.00018 3.8E-09 72.6 4.1 57 21-77 75-144 (621)
259 PRK07512 L-aspartate oxidase; 97.3 0.00016 3.5E-09 78.4 4.2 52 279-332 136-191 (513)
260 TIGR01810 betA choline dehydro 97.3 0.00017 3.7E-09 78.7 4.3 33 24-56 1-34 (532)
261 PTZ00188 adrenodoxin reductase 97.3 0.0003 6.5E-09 74.3 5.6 42 22-63 39-81 (506)
262 KOG1335 Dihydrolipoamide dehyd 97.3 0.00023 5.1E-09 71.2 4.3 43 21-63 38-80 (506)
263 TIGR01811 sdhA_Bsu succinate d 97.3 0.00019 4.1E-09 79.2 4.2 36 25-60 1-36 (603)
264 PRK13984 putative oxidoreducta 97.3 0.0003 6.4E-09 78.1 5.7 43 20-62 281-323 (604)
265 PRK07845 flavoprotein disulfid 97.3 0.00027 5.8E-09 75.9 5.1 52 279-333 218-269 (466)
266 KOG2665 Predicted FAD-dependen 97.3 0.00026 5.7E-09 69.0 4.4 58 2-59 27-87 (453)
267 PRK08255 salicylyl-CoA 5-hydro 97.3 0.00023 5.1E-09 80.9 4.7 35 23-57 1-37 (765)
268 PLN02785 Protein HOTHEAD 97.3 0.00031 6.8E-09 77.1 5.3 35 21-56 54-88 (587)
269 PRK13800 putative oxidoreducta 97.2 0.00032 7E-09 81.2 5.5 36 21-56 12-47 (897)
270 TIGR03378 glycerol3P_GlpB glyc 97.2 0.00033 7.2E-09 72.9 4.5 56 279-336 263-321 (419)
271 COG0445 GidA Flavin-dependent 97.0 0.00049 1.1E-08 72.2 3.9 35 20-54 2-36 (621)
272 PF04820 Trp_halogenase: Trypt 96.9 0.00078 1.7E-08 71.9 3.9 54 279-334 154-208 (454)
273 KOG2404 Fumarate reductase, fl 96.8 0.0012 2.5E-08 64.8 4.3 39 24-62 11-49 (477)
274 COG4716 Myosin-crossreactive a 96.8 0.014 3E-07 58.6 11.5 43 21-63 21-67 (587)
275 COG0029 NadB Aspartate oxidase 96.7 0.0015 3.3E-08 67.9 4.4 33 24-57 9-41 (518)
276 PRK09897 hypothetical protein; 96.7 0.0018 3.8E-08 70.1 4.8 38 23-60 2-42 (534)
277 PRK09754 phenylpropionate diox 96.7 0.002 4.4E-08 67.6 5.0 52 280-335 187-238 (396)
278 KOG1238 Glucose dehydrogenase/ 96.6 0.0024 5.3E-08 68.6 5.4 39 19-57 54-93 (623)
279 PRK09564 coenzyme A disulfide 96.6 0.0021 4.7E-08 68.5 4.4 52 279-334 191-242 (444)
280 KOG2311 NAD/FAD-utilizing prot 96.5 0.0029 6.2E-08 65.2 4.3 36 19-54 25-60 (679)
281 PTZ00318 NADH dehydrogenase-li 96.4 0.0035 7.6E-08 66.4 5.0 49 280-335 229-277 (424)
282 KOG4716 Thioredoxin reductase 96.4 0.0027 5.9E-08 62.6 3.7 33 21-53 18-50 (503)
283 COG0446 HcaD Uncharacterized N 96.3 0.0036 7.9E-08 65.5 4.5 40 23-62 137-176 (415)
284 COG1206 Gid NAD(FAD)-utilizing 96.3 0.0036 7.9E-08 61.7 3.8 40 22-61 3-42 (439)
285 KOG2960 Protein involved in th 96.2 0.0016 3.5E-08 60.1 0.8 41 22-62 76-118 (328)
286 PRK13512 coenzyme A disulfide 96.2 0.0051 1.1E-07 65.5 4.7 49 279-334 189-237 (438)
287 KOG3855 Monooxygenase involved 96.1 0.0063 1.4E-07 61.8 4.4 38 19-56 33-74 (481)
288 KOG0405 Pyridine nucleotide-di 96.0 0.01 2.2E-07 59.1 5.0 44 20-63 18-61 (478)
289 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.0078 1.7E-07 56.0 4.1 33 24-56 2-34 (185)
290 TIGR02352 thiamin_ThiO glycine 95.8 0.031 6.8E-07 56.8 8.0 59 271-332 126-187 (337)
291 KOG2852 Possible oxidoreductas 95.4 0.0096 2.1E-07 57.8 2.6 40 23-62 11-56 (380)
292 PF13454 NAD_binding_9: FAD-NA 95.4 0.018 3.8E-07 52.0 4.1 31 26-56 1-36 (156)
293 TIGR03169 Nterm_to_SelD pyridi 95.3 0.018 3.8E-07 59.7 4.5 49 280-335 192-240 (364)
294 COG1252 Ndh NADH dehydrogenase 95.3 0.022 4.7E-07 59.2 4.7 47 279-332 209-256 (405)
295 KOG0042 Glycerol-3-phosphate d 95.3 0.01 2.2E-07 62.3 2.3 40 22-61 67-106 (680)
296 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.023 5.1E-07 52.6 4.4 33 24-56 1-33 (180)
297 COG2509 Uncharacterized FAD-de 95.0 0.072 1.6E-06 55.2 7.4 61 274-336 165-228 (486)
298 PRK09754 phenylpropionate diox 94.9 0.03 6.4E-07 58.8 4.6 39 23-61 145-183 (396)
299 PF01210 NAD_Gly3P_dh_N: NAD-d 94.9 0.032 6.9E-07 50.4 4.2 32 24-55 1-32 (157)
300 PRK06249 2-dehydropantoate 2-r 94.6 0.045 9.8E-07 55.4 5.0 37 19-55 2-38 (313)
301 KOG1800 Ferredoxin/adrenodoxin 94.5 0.051 1.1E-06 54.9 4.8 43 22-64 20-64 (468)
302 COG3634 AhpF Alkyl hydroperoxi 94.4 0.025 5.4E-07 56.3 2.4 39 21-61 210-248 (520)
303 PRK06129 3-hydroxyacyl-CoA deh 94.4 0.041 8.9E-07 55.6 4.1 33 24-56 4-36 (308)
304 PRK01438 murD UDP-N-acetylmura 94.3 0.063 1.4E-06 57.9 5.6 36 21-56 15-50 (480)
305 PRK04965 NADH:flavorubredoxin 94.3 0.055 1.2E-06 56.3 4.8 38 23-60 142-179 (377)
306 COG4529 Uncharacterized protei 94.3 0.055 1.2E-06 56.6 4.7 40 23-63 2-45 (474)
307 PRK04965 NADH:flavorubredoxin 94.2 0.059 1.3E-06 56.1 4.9 53 280-335 184-236 (377)
308 PF07156 Prenylcys_lyase: Pren 94.2 0.24 5.2E-06 51.2 9.2 111 206-333 68-182 (368)
309 PF13434 K_oxygenase: L-lysine 94.2 0.034 7.3E-07 57.0 3.0 35 22-56 2-37 (341)
310 PF02558 ApbA: Ketopantoate re 94.2 0.065 1.4E-06 47.8 4.5 31 25-55 1-31 (151)
311 PRK02705 murD UDP-N-acetylmura 93.9 0.063 1.4E-06 57.5 4.6 34 24-57 2-35 (459)
312 TIGR03197 MnmC_Cterm tRNA U-34 93.9 0.13 2.8E-06 53.6 6.7 63 271-337 124-190 (381)
313 PRK07251 pyridine nucleotide-d 93.8 0.079 1.7E-06 56.4 5.1 38 23-60 158-195 (438)
314 PRK05976 dihydrolipoamide dehy 93.8 0.069 1.5E-06 57.4 4.6 37 23-59 181-217 (472)
315 PRK11064 wecC UDP-N-acetyl-D-m 93.8 0.066 1.4E-06 56.5 4.4 35 22-56 3-37 (415)
316 TIGR01350 lipoamide_DH dihydro 93.6 0.081 1.8E-06 56.7 4.7 37 23-59 171-207 (461)
317 PRK08293 3-hydroxybutyryl-CoA 93.6 0.086 1.9E-06 52.7 4.6 33 23-55 4-36 (287)
318 PRK09260 3-hydroxybutyryl-CoA 93.5 0.075 1.6E-06 53.2 3.9 33 24-56 3-35 (288)
319 COG1004 Ugd Predicted UDP-gluc 93.4 0.083 1.8E-06 54.0 4.0 33 23-55 1-33 (414)
320 PRK14989 nitrite reductase sub 93.4 0.098 2.1E-06 60.2 5.1 55 280-335 188-242 (847)
321 TIGR02053 MerA mercuric reduct 93.3 0.096 2.1E-06 56.2 4.6 38 23-60 167-204 (463)
322 PRK14106 murD UDP-N-acetylmura 93.3 0.11 2.4E-06 55.4 5.2 36 20-55 3-38 (450)
323 PRK06370 mercuric reductase; V 93.3 0.11 2.3E-06 55.8 5.0 38 23-60 172-209 (463)
324 COG0569 TrkA K+ transport syst 93.2 0.1 2.2E-06 50.2 4.1 33 24-56 2-34 (225)
325 PRK07530 3-hydroxybutyryl-CoA 93.1 0.13 2.7E-06 51.6 4.9 33 23-55 5-37 (292)
326 TIGR01421 gluta_reduc_1 glutat 93.1 0.11 2.4E-06 55.5 4.7 37 23-59 167-203 (450)
327 PRK13512 coenzyme A disulfide 93.0 0.11 2.4E-06 55.3 4.5 37 23-59 149-185 (438)
328 PRK06467 dihydrolipoamide dehy 93.0 0.12 2.5E-06 55.7 4.7 38 23-60 175-212 (471)
329 PRK04148 hypothetical protein; 93.0 0.092 2E-06 45.8 3.1 33 23-56 18-50 (134)
330 PRK06416 dihydrolipoamide dehy 93.0 0.12 2.5E-06 55.5 4.7 38 23-60 173-210 (462)
331 PRK07066 3-hydroxybutyryl-CoA 92.9 0.11 2.4E-06 52.6 4.2 33 24-56 9-41 (321)
332 PRK06912 acoL dihydrolipoamide 92.9 0.12 2.7E-06 55.3 4.8 37 23-59 171-207 (458)
333 PRK06115 dihydrolipoamide dehy 92.9 0.13 2.8E-06 55.3 4.8 37 23-59 175-211 (466)
334 PRK07846 mycothione reductase; 92.8 0.13 2.8E-06 55.1 4.8 36 23-58 167-202 (451)
335 PRK07818 dihydrolipoamide dehy 92.8 0.13 2.8E-06 55.3 4.7 37 23-59 173-209 (466)
336 PRK06292 dihydrolipoamide dehy 92.8 0.14 2.9E-06 55.0 4.9 37 23-59 170-206 (460)
337 PRK07819 3-hydroxybutyryl-CoA 92.8 0.14 3E-06 51.2 4.6 34 24-57 7-40 (286)
338 TIGR03378 glycerol3P_GlpB glyc 92.7 0.42 9.1E-06 50.1 8.2 33 23-55 1-33 (419)
339 TIGR03385 CoA_CoA_reduc CoA-di 92.6 0.14 2.9E-06 54.4 4.6 36 23-58 138-173 (427)
340 PRK05249 soluble pyridine nucl 92.6 0.16 3.4E-06 54.5 5.1 38 23-60 176-213 (461)
341 TIGR02374 nitri_red_nirB nitri 92.6 0.12 2.6E-06 59.2 4.3 54 280-336 183-236 (785)
342 PRK06522 2-dehydropantoate 2-r 92.5 0.14 3.1E-06 51.4 4.4 32 24-55 2-33 (304)
343 PRK05808 3-hydroxybutyryl-CoA 92.5 0.14 3E-06 51.0 4.2 33 24-56 5-37 (282)
344 TIGR03862 flavo_PP4765 unchara 92.5 0.7 1.5E-05 47.9 9.4 65 271-340 77-144 (376)
345 PRK06035 3-hydroxyacyl-CoA deh 92.4 0.14 2.9E-06 51.4 4.0 33 24-56 5-37 (291)
346 TIGR02374 nitri_red_nirB nitri 92.2 0.15 3.4E-06 58.3 4.6 37 23-59 141-177 (785)
347 cd05292 LDH_2 A subgroup of L- 92.2 0.18 3.8E-06 51.0 4.5 32 24-55 2-35 (308)
348 PRK06327 dihydrolipoamide dehy 92.2 0.19 4.1E-06 54.1 5.0 38 23-60 184-221 (475)
349 COG0686 Ald Alanine dehydrogen 92.1 0.12 2.5E-06 51.0 3.0 43 23-65 169-219 (371)
350 TIGR03377 glycerol3P_GlpA glyc 92.1 0.42 9.2E-06 52.0 7.7 59 271-332 118-184 (516)
351 TIGR03026 NDP-sugDHase nucleot 92.0 0.16 3.4E-06 53.7 4.1 33 24-56 2-34 (411)
352 PRK05708 2-dehydropantoate 2-r 92.0 0.18 3.9E-06 50.9 4.4 33 23-55 3-35 (305)
353 PRK07845 flavoprotein disulfid 91.9 0.24 5.1E-06 53.2 5.5 39 23-61 178-216 (466)
354 TIGR03452 mycothione_red mycot 91.9 0.19 4.1E-06 53.7 4.7 37 23-59 170-206 (452)
355 PRK12921 2-dehydropantoate 2-r 91.8 0.19 4E-06 50.6 4.3 30 24-53 2-31 (305)
356 TIGR03140 AhpF alkyl hydropero 91.8 0.18 4E-06 54.8 4.5 36 23-58 353-388 (515)
357 cd01080 NAD_bind_m-THF_DH_Cycl 91.8 0.27 5.9E-06 44.8 4.9 34 21-54 43-77 (168)
358 PRK08229 2-dehydropantoate 2-r 91.6 0.18 4E-06 51.6 4.0 33 23-55 3-35 (341)
359 PRK09564 coenzyme A disulfide 91.5 0.23 4.9E-06 52.9 4.8 37 23-59 150-186 (444)
360 TIGR01316 gltA glutamate synth 91.5 0.21 4.6E-06 53.3 4.5 34 23-56 273-306 (449)
361 TIGR01763 MalateDH_bact malate 91.5 0.25 5.4E-06 49.8 4.7 34 23-56 2-36 (305)
362 PF13738 Pyr_redox_3: Pyridine 91.4 0.49 1.1E-05 44.2 6.5 52 279-333 82-133 (203)
363 PRK06130 3-hydroxybutyryl-CoA 91.4 0.22 4.7E-06 50.4 4.2 32 24-55 6-37 (311)
364 PF00890 FAD_binding_2: FAD bi 91.4 0.45 9.7E-06 50.2 6.8 36 24-59 1-36 (417)
365 PRK00141 murD UDP-N-acetylmura 91.3 0.26 5.7E-06 53.0 5.0 45 9-55 4-48 (473)
366 PLN02545 3-hydroxybutyryl-CoA 91.3 0.25 5.4E-06 49.5 4.6 32 24-55 6-37 (295)
367 PRK14989 nitrite reductase sub 91.3 0.22 4.8E-06 57.3 4.6 36 24-59 147-182 (847)
368 TIGR01424 gluta_reduc_2 glutat 91.2 0.25 5.3E-06 52.8 4.7 37 23-59 167-203 (446)
369 PRK07417 arogenate dehydrogena 91.2 0.23 5E-06 49.4 4.1 32 24-55 2-33 (279)
370 COG1249 Lpd Pyruvate/2-oxoglut 91.2 0.26 5.7E-06 52.4 4.7 39 23-61 174-212 (454)
371 PF05834 Lycopene_cycl: Lycope 91.2 13 0.00029 38.5 17.5 50 279-332 87-136 (374)
372 PTZ00153 lipoamide dehydrogena 91.2 0.25 5.5E-06 55.1 4.8 37 23-59 313-349 (659)
373 PTZ00058 glutathione reductase 91.1 0.24 5.1E-06 54.4 4.5 37 23-59 238-274 (561)
374 PRK10262 thioredoxin reductase 91.1 0.27 5.8E-06 49.9 4.6 35 23-57 147-181 (321)
375 PLN02353 probable UDP-glucose 90.8 0.26 5.6E-06 52.8 4.3 34 23-56 2-37 (473)
376 PRK15317 alkyl hydroperoxide r 90.8 0.27 5.8E-06 53.6 4.5 35 23-57 352-386 (517)
377 TIGR03143 AhpF_homolog putativ 90.8 0.26 5.7E-06 54.1 4.5 35 23-57 144-178 (555)
378 PF01262 AlaDh_PNT_C: Alanine 90.7 0.34 7.4E-06 44.2 4.5 33 23-55 21-53 (168)
379 PRK00094 gpsA NAD(P)H-dependen 90.7 0.31 6.7E-06 49.5 4.6 32 24-55 3-34 (325)
380 PRK14618 NAD(P)H-dependent gly 90.6 0.36 7.7E-06 49.3 5.0 33 23-55 5-37 (328)
381 PLN02507 glutathione reductase 90.5 0.31 6.7E-06 52.8 4.6 36 23-58 204-239 (499)
382 PRK14619 NAD(P)H-dependent gly 90.5 0.34 7.4E-06 48.9 4.7 33 23-55 5-37 (308)
383 PRK11199 tyrA bifunctional cho 90.5 0.36 7.8E-06 50.2 5.0 39 17-55 93-132 (374)
384 PRK08010 pyridine nucleotide-d 90.5 0.38 8.1E-06 51.3 5.2 38 23-60 159-196 (441)
385 PRK12770 putative glutamate sy 90.5 0.29 6.3E-06 50.4 4.2 34 23-56 173-207 (352)
386 PRK05257 malate:quinone oxidor 90.5 0.71 1.5E-05 49.9 7.3 62 270-333 171-241 (494)
387 PRK06116 glutathione reductase 90.4 0.34 7.3E-06 51.8 4.8 36 23-58 168-203 (450)
388 PRK12831 putative oxidoreducta 90.4 0.31 6.8E-06 52.3 4.5 34 23-56 282-315 (464)
389 KOG0404 Thioredoxin reductase 90.3 0.3 6.5E-06 45.9 3.6 42 22-63 8-53 (322)
390 COG1748 LYS9 Saccharopine dehy 90.3 0.35 7.6E-06 50.0 4.5 32 23-54 2-34 (389)
391 PRK06719 precorrin-2 dehydroge 90.2 0.39 8.5E-06 43.3 4.3 35 19-53 10-44 (157)
392 PF03446 NAD_binding_2: NAD bi 90.2 0.41 8.8E-06 43.4 4.5 33 23-55 2-34 (163)
393 TIGR01292 TRX_reduct thioredox 90.1 0.35 7.7E-06 48.1 4.4 35 23-57 142-176 (300)
394 PRK15057 UDP-glucose 6-dehydro 90.0 0.34 7.4E-06 50.6 4.2 32 24-56 2-33 (388)
395 PRK13748 putative mercuric red 90.0 0.38 8.2E-06 53.0 4.9 34 23-56 271-304 (561)
396 PF02254 TrkA_N: TrkA-N domain 90.0 0.47 1E-05 40.0 4.4 32 25-56 1-32 (116)
397 TIGR01320 mal_quin_oxido malat 90.0 0.91 2E-05 49.0 7.6 40 23-62 1-42 (483)
398 PRK06718 precorrin-2 dehydroge 89.9 0.42 9E-06 45.1 4.4 36 19-54 7-42 (202)
399 TIGR01470 cysG_Nterm siroheme 89.9 0.41 9E-06 45.2 4.4 36 20-55 7-42 (205)
400 PF13241 NAD_binding_7: Putati 89.7 0.27 5.9E-06 40.8 2.7 37 19-55 4-40 (103)
401 PLN02546 glutathione reductase 89.7 0.4 8.8E-06 52.6 4.7 37 23-59 253-289 (558)
402 TIGR01915 npdG NADPH-dependent 89.6 0.43 9.3E-06 45.6 4.4 32 24-55 2-34 (219)
403 PRK14620 NAD(P)H-dependent gly 89.6 0.41 9E-06 48.7 4.5 32 24-55 2-33 (326)
404 PLN02657 3,8-divinyl protochlo 89.6 0.69 1.5E-05 48.4 6.2 50 6-55 44-94 (390)
405 PRK14694 putative mercuric red 89.6 0.45 9.8E-06 51.1 4.9 35 23-57 179-213 (468)
406 PF13478 XdhC_C: XdhC Rossmann 89.5 0.4 8.7E-06 42.1 3.7 32 25-56 1-32 (136)
407 TIGR00518 alaDH alanine dehydr 89.3 0.45 9.7E-06 49.4 4.5 33 23-55 168-200 (370)
408 cd01075 NAD_bind_Leu_Phe_Val_D 89.1 0.74 1.6E-05 43.3 5.5 37 19-55 25-61 (200)
409 PRK14727 putative mercuric red 88.9 0.55 1.2E-05 50.6 5.0 33 23-55 189-221 (479)
410 PRK07531 bifunctional 3-hydrox 88.9 0.43 9.3E-06 51.6 4.2 32 24-55 6-37 (495)
411 TIGR02354 thiF_fam2 thiamine b 88.9 0.61 1.3E-05 43.9 4.7 33 22-54 21-54 (200)
412 COG3486 IucD Lysine/ornithine 88.8 0.51 1.1E-05 48.5 4.3 39 19-57 2-41 (436)
413 KOG2304 3-hydroxyacyl-CoA dehy 88.8 0.42 9.1E-06 45.0 3.4 35 22-56 11-45 (298)
414 PRK15116 sulfur acceptor prote 88.8 0.6 1.3E-05 46.0 4.7 34 22-55 30-64 (268)
415 PRK06134 putative FAD-binding 88.8 1.4 3E-05 48.8 8.1 52 279-332 217-272 (581)
416 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.6 0.45 9.7E-06 51.4 4.0 33 24-56 7-39 (503)
417 PF10727 Rossmann-like: Rossma 88.4 0.46 1E-05 41.2 3.2 37 19-55 7-43 (127)
418 PRK12409 D-amino acid dehydrog 88.4 1.9 4.1E-05 45.3 8.6 60 270-332 185-252 (410)
419 cd05291 HicDH_like L-2-hydroxy 88.4 0.6 1.3E-05 47.1 4.5 33 24-56 2-36 (306)
420 PF01488 Shikimate_DH: Shikima 88.2 0.77 1.7E-05 40.2 4.6 33 22-54 12-45 (135)
421 KOG3851 Sulfide:quinone oxidor 88.2 0.48 1E-05 47.0 3.5 36 20-55 37-74 (446)
422 PTZ00052 thioredoxin reductase 88.2 0.63 1.4E-05 50.4 4.9 31 24-54 184-214 (499)
423 PRK01710 murD UDP-N-acetylmura 88.1 0.59 1.3E-05 50.1 4.5 32 24-55 16-47 (458)
424 PRK11749 dihydropyrimidine deh 88.0 0.58 1.3E-05 50.1 4.5 34 23-56 274-308 (457)
425 KOG3923 D-aspartate oxidase [A 88.0 0.29 6.3E-06 48.0 1.9 26 21-46 2-27 (342)
426 PRK07121 hypothetical protein; 88.0 1.4 3E-05 47.7 7.3 54 278-332 176-233 (492)
427 PF01134 GIDA: Glucose inhibit 87.9 1.8 3.9E-05 45.0 7.7 28 24-51 1-28 (392)
428 TIGR01505 tartro_sem_red 2-hyd 87.9 0.57 1.2E-05 46.8 4.1 31 25-55 2-32 (291)
429 PLN02572 UDP-sulfoquinovose sy 87.8 0.95 2.1E-05 48.2 5.9 44 11-54 36-80 (442)
430 TIGR01438 TGR thioredoxin and 87.8 0.57 1.2E-05 50.6 4.2 32 23-54 181-212 (484)
431 PLN02695 GDP-D-mannose-3',5'-e 87.7 0.92 2E-05 47.1 5.6 40 16-55 15-55 (370)
432 PRK04308 murD UDP-N-acetylmura 87.7 0.81 1.8E-05 48.8 5.3 35 23-57 6-40 (445)
433 PRK08268 3-hydroxy-acyl-CoA de 87.5 0.66 1.4E-05 50.3 4.5 34 23-56 8-41 (507)
434 cd01339 LDH-like_MDH L-lactate 87.5 0.63 1.4E-05 46.8 4.1 31 25-55 1-32 (300)
435 PRK11730 fadB multifunctional 87.4 0.54 1.2E-05 53.2 4.0 34 23-56 314-347 (715)
436 PF04820 Trp_halogenase: Trypt 87.3 1.7 3.7E-05 46.5 7.5 34 24-57 1-37 (454)
437 PRK12843 putative FAD-binding 87.3 1.8 3.9E-05 47.8 7.9 52 279-332 221-276 (578)
438 COG0771 MurD UDP-N-acetylmuram 87.3 0.66 1.4E-05 49.0 4.2 36 22-57 7-42 (448)
439 TIGR01816 sdhA_forward succina 87.3 2.3 5E-05 46.9 8.7 58 273-332 112-175 (565)
440 PRK15461 NADH-dependent gamma- 87.3 0.67 1.4E-05 46.5 4.1 32 24-55 3-34 (296)
441 TIGR01423 trypano_reduc trypan 87.2 0.72 1.6E-05 49.8 4.6 37 23-59 188-227 (486)
442 PRK04690 murD UDP-N-acetylmura 87.1 0.69 1.5E-05 49.7 4.4 34 23-56 9-42 (468)
443 PRK02472 murD UDP-N-acetylmura 87.0 0.83 1.8E-05 48.7 4.9 34 23-56 6-39 (447)
444 PRK13339 malate:quinone oxidor 86.8 2.1 4.6E-05 46.2 7.8 63 269-333 171-242 (497)
445 PRK06223 malate dehydrogenase; 86.8 0.86 1.9E-05 46.0 4.7 34 23-56 3-37 (307)
446 PRK06481 fumarate reductase fl 86.8 2.1 4.5E-05 46.5 7.9 51 280-332 191-245 (506)
447 TIGR02437 FadB fatty oxidation 86.7 0.71 1.5E-05 52.2 4.4 34 23-56 314-347 (714)
448 PLN02256 arogenate dehydrogena 86.7 0.93 2E-05 45.7 4.7 35 21-55 35-69 (304)
449 PTZ00318 NADH dehydrogenase-li 86.6 0.85 1.8E-05 48.3 4.7 36 24-59 175-224 (424)
450 PRK03369 murD UDP-N-acetylmura 86.6 0.79 1.7E-05 49.5 4.5 32 24-55 14-45 (488)
451 PRK03803 murD UDP-N-acetylmura 86.5 0.92 2E-05 48.4 4.9 38 18-55 2-39 (448)
452 PRK08773 2-octaprenyl-3-methyl 86.4 2.5 5.3E-05 44.1 8.0 38 20-57 4-41 (392)
453 COG1250 FadB 3-hydroxyacyl-CoA 86.4 0.77 1.7E-05 46.0 3.9 32 23-54 4-35 (307)
454 PRK05329 anaerobic glycerol-3- 86.3 2.6 5.6E-05 44.6 8.0 34 22-55 2-35 (422)
455 COG0287 TyrA Prephenate dehydr 86.2 0.71 1.5E-05 45.8 3.6 43 23-65 4-46 (279)
456 cd05191 NAD_bind_amino_acid_DH 86.2 1.5 3.2E-05 35.0 4.9 32 22-53 23-55 (86)
457 PRK11559 garR tartronate semia 86.2 0.89 1.9E-05 45.5 4.4 32 24-55 4-35 (296)
458 cd01065 NAD_bind_Shikimate_DH 86.1 1.3 2.8E-05 39.5 4.9 34 22-55 19-53 (155)
459 PLN02712 arogenate dehydrogena 86.0 1.2 2.6E-05 49.9 5.6 35 21-55 51-85 (667)
460 COG2509 Uncharacterized FAD-de 86.0 0.7 1.5E-05 48.1 3.5 42 16-57 12-58 (486)
461 PRK10157 putative oxidoreducta 86.0 2.5 5.5E-05 44.8 7.9 50 280-332 109-158 (428)
462 COG1893 ApbA Ketopantoate redu 86.0 0.75 1.6E-05 46.4 3.7 33 24-56 2-34 (307)
463 PRK00683 murD UDP-N-acetylmura 85.9 0.86 1.9E-05 48.2 4.3 34 23-56 4-37 (418)
464 PRK12778 putative bifunctional 85.7 0.84 1.8E-05 52.2 4.3 34 23-56 571-605 (752)
465 PRK09424 pntA NAD(P) transhydr 85.5 0.88 1.9E-05 49.0 4.1 34 22-55 165-198 (509)
466 cd00401 AdoHcyase S-adenosyl-L 85.5 1 2.2E-05 47.3 4.4 35 22-56 202-236 (413)
467 TIGR02964 xanthine_xdhC xanthi 85.1 1.2 2.6E-05 43.3 4.5 35 22-56 100-134 (246)
468 TIGR02441 fa_ox_alpha_mit fatt 85.0 0.86 1.9E-05 51.7 3.9 34 23-56 336-369 (737)
469 PRK04176 ribulose-1,5-biphosph 85.0 2.8 6E-05 41.1 7.1 53 279-332 104-167 (257)
470 COG2085 Predicted dinucleotide 84.9 1.1 2.3E-05 42.2 3.8 31 24-54 3-33 (211)
471 PTZ00142 6-phosphogluconate de 84.9 0.94 2E-05 48.5 4.0 34 23-56 2-35 (470)
472 TIGR00872 gnd_rel 6-phosphoglu 84.9 1.1 2.4E-05 45.0 4.3 32 24-55 2-33 (298)
473 TIGR01813 flavo_cyto_c flavocy 84.8 2.9 6.2E-05 44.4 7.7 38 24-61 1-39 (439)
474 PRK12835 3-ketosteroid-delta-1 84.7 2.5 5.5E-05 46.7 7.4 54 278-332 212-269 (584)
475 PRK06175 L-aspartate oxidase; 84.6 3.6 7.8E-05 43.7 8.3 39 21-60 3-41 (433)
476 PRK07688 thiamine/molybdopteri 84.6 1.3 2.8E-05 45.4 4.7 33 22-54 24-57 (339)
477 PRK12549 shikimate 5-dehydroge 84.6 1.3 2.7E-05 44.3 4.5 33 23-55 128-161 (284)
478 PRK07502 cyclohexadienyl dehyd 84.6 1.2 2.6E-05 44.9 4.5 33 23-55 7-41 (307)
479 PRK08306 dipicolinate synthase 84.6 1.2 2.7E-05 44.6 4.5 34 22-55 152-185 (296)
480 cd01078 NAD_bind_H4MPT_DH NADP 84.6 1.6 3.4E-05 40.7 5.0 34 21-54 27-61 (194)
481 COG2072 TrkA Predicted flavopr 84.6 1.4 3E-05 46.9 5.1 38 21-58 174-211 (443)
482 TIGR02440 FadJ fatty oxidation 84.5 0.95 2.1E-05 51.1 4.0 34 23-56 305-339 (699)
483 PRK09496 trkA potassium transp 84.4 1 2.2E-05 48.0 4.1 33 24-56 2-34 (453)
484 PTZ00082 L-lactate dehydrogena 84.3 1.5 3.3E-05 44.5 5.1 35 23-57 7-42 (321)
485 PF00070 Pyr_redox: Pyridine n 84.0 3 6.5E-05 32.5 5.6 41 279-322 40-80 (80)
486 PRK02006 murD UDP-N-acetylmura 83.8 1.2 2.6E-05 48.3 4.3 33 23-55 8-40 (498)
487 COG3380 Predicted NAD/FAD-depe 83.7 3.8 8.3E-05 40.0 7.0 51 275-333 104-155 (331)
488 TIGR00275 flavoprotein, HI0933 83.5 4.3 9.4E-05 42.6 8.2 36 26-61 1-36 (400)
489 PF00899 ThiF: ThiF family; I 83.4 1.4 3.1E-05 38.4 3.9 32 23-54 3-35 (135)
490 cd01487 E1_ThiF_like E1_ThiF_l 83.4 1.6 3.5E-05 40.1 4.4 31 24-54 1-32 (174)
491 PRK11154 fadJ multifunctional 83.2 1.3 2.7E-05 50.2 4.3 33 23-55 310-343 (708)
492 TIGR01984 UbiH 2-polyprenyl-6- 83.2 3.9 8.4E-05 42.3 7.7 34 24-57 1-35 (382)
493 PRK00421 murC UDP-N-acetylmura 83.2 1.2 2.6E-05 47.8 3.9 34 23-56 8-42 (461)
494 PRK12844 3-ketosteroid-delta-1 83.1 3.4 7.3E-05 45.5 7.5 53 278-332 207-263 (557)
495 PF03807 F420_oxidored: NADP o 83.1 1.9 4.1E-05 34.9 4.3 31 25-55 2-36 (96)
496 PRK05675 sdhA succinate dehydr 83.0 4.4 9.5E-05 44.7 8.4 60 272-332 118-183 (570)
497 TIGR01812 sdhA_frdA_Gneg succi 83.0 4.8 0.0001 44.4 8.7 38 24-61 1-38 (566)
498 TIGR00292 thiazole biosynthesi 82.9 4.4 9.5E-05 39.7 7.5 52 279-332 100-164 (254)
499 PLN02464 glycerol-3-phosphate 82.9 4.6 9.9E-05 45.1 8.5 54 279-332 232-290 (627)
500 PRK09599 6-phosphogluconate de 82.9 1.5 3.3E-05 44.0 4.4 32 24-55 2-33 (301)
No 1
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-82 Score=612.45 Aligned_cols=465 Identities=33% Similarity=0.596 Sum_probs=372.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchh--------hhhhhhh---cCCC---------
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA--------DLTHFLN---SHST--------- 78 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~--------~~~~~~~---~~~~--------- 78 (539)
.|++|||||||||+.++++|++.+|+|.+|||||+|.||||.|+||++. .+.+..+ +...
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~ 84 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNA 84 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCC
Confidence 4678999999999999999999999999999999999999999999987 3333321 1110
Q ss_pred -CCCCCCCCccccccccc------c---------cccccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceec
Q 009247 79 -PSSVCPDPLYSDVEISN------Y---------ASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI 142 (539)
Q Consensus 79 -~~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~ 142 (539)
..+.+....|.+++... + ....+....|+|++||. |+++|++|.++++|+++++.+|.||+.+
T Consensus 85 ~~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLv-pkilys~g~lI~lLikS~vsrYaEFK~V 163 (547)
T KOG4405|consen 85 PPTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLV-PKILYSAGELIQLLIKSNVSRYAEFKNV 163 (547)
T ss_pred CCCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhh-hHHHhcccHHHHHHHHhcchhhhhhhcc
Confidence 01111123333333331 0 01112346899999998 9999999999999999999999999999
Q ss_pred cceeeEccCCceeecCCCHHHhhhccCCChHHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChh
Q 009247 143 DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHK 222 (539)
Q Consensus 143 ~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~ 222 (539)
++.+.++ +|++..|||||+++|.++.|++.|||+||||++++..|..+. ..+...++.+.||.+||++++++++
T Consensus 164 ~r~l~~~-eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk-----~~~~~~~~~e~~F~EyL~~~rltp~ 237 (547)
T KOG4405|consen 164 DRILAFR-EGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEK-----DPDEYVEFRERPFSEYLKTMRLTPK 237 (547)
T ss_pred chhhccc-CCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhcc-----CcHHHHHhhcCcHHHHHHhcCCChh
Confidence 9988876 889999999999999999999999999999999999985221 1122345677899999999999999
Q ss_pred HHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCce
Q 009247 223 IKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPV 302 (539)
Q Consensus 223 l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V 302 (539)
++.+++|+|+|..+++ .++.+|+.+.+.|+.|+||||+++ |+||.||.|||+|+|||+||++||.|+|+++|
T Consensus 238 lqs~vl~aIaM~~~~~------~tt~eGm~at~~fl~slGrfgntp--fLfPlYGqGELpQcFCRlcAVfGgIYcLr~~V 309 (547)
T KOG4405|consen 238 LQSIVLHAIAMLSESQ------LTTIEGMDATKNFLTSLGRFGNTP--FLFPLYGQGELPQCFCRLCAVFGGIYCLRRPV 309 (547)
T ss_pred hHHHHHHHHHhcCccc------ccHHHHHHHHHHHHHHhhccCCCc--ceeeccCCCcchHHHHHHHHHhcceEEeccch
Confidence 9999999999976542 478999999999999999999876 99999999999999999999999999999999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCC-
Q 009247 303 ISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLS- 381 (539)
Q Consensus 303 ~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~- 381 (539)
+.|..+++.+++..+..+.|+++.|+++|+.|.++ +... .... ...+|+|+++|+++++...+.
T Consensus 310 q~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y~-pe~~-~~~~-------------~~K~Israv~itd~sil~~e~~ 374 (547)
T KOG4405|consen 310 QAIVLDKESLDCKAILDSFGQRINAKNFVVSPSYA-PEVV-CSRV-------------QLKQISRAVLITDPSILKTELD 374 (547)
T ss_pred hheeecccccchhhhHhhhcchhcceeeeecCccc-cccc-cccc-------------chhhcceeEEecCccccchhHH
Confidence 99999854444333334789999999999999987 4322 1111 123699999999999764331
Q ss_pred c--eEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCCcEEEEEEEeecCccchHHHHHHHHHHHHhhhhcCCCCCCCCccc
Q 009247 382 N--FLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQS 459 (539)
Q Consensus 382 ~--~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 459 (539)
. .++..++..- ....+++++.+++++.||+|.|++|++-.. ...+.++++..+.+++... .++
T Consensus 375 q~~~ll~~~~~ep---g~~avr~iel~~~t~tc~kg~yLvhlT~~~--s~~~~ed~~S~~~kif~t~----------~~~ 439 (547)
T KOG4405|consen 375 QQLSLLSLLAVEP---GAMAVRLIELCSSTMTCPKGTYLVHLTCLS--SKTAREDLESDVVKIFTTE----------IKN 439 (547)
T ss_pred hhhhhhhccccCc---chhhHHHHHhhcccccCccceEEEEeeccc--CcccccchhhhHHHHhhhh----------hcc
Confidence 1 2334443321 245678899999999999999999998432 3477888999999988631 111
Q ss_pred ccccccCceEEEEEeeEeecCC---C--CCCcEEEcCCCCCCCChHHHHHHHHHHHHHhCCCCCCCCCCCCCCCcCC
Q 009247 460 EDMEEAKPTLLWSALYIQDLSL---G--QFGSIISTPTPDGNLNYNDLLDATEKLYRKLYPNEELFPETTSPENSED 531 (539)
Q Consensus 460 ~~~~~~~~~~l~~~~~~~~~~~---~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~f~p~~~~~~~~~~ 531 (539)
+..||++||++||+|...+ . -.+||++||+||..|+|+.||++|+++|++|||++|||||+|+||||+.
T Consensus 440 ---E~~kp~llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~nL~y~~aVe~a~~Lf~k~~p~edf~p~~p~peei~~ 513 (547)
T KOG4405|consen 440 ---ETSKPRLLWALYFTMRDSSVISRSPLAENVYVCPPPDCNLGYDEAVEQARTLFQKIFPSEDFLPRAPNPEEIIT 513 (547)
T ss_pred ---ccccceehHHHHhhHHhhcccccCCCCCceEECCCCCCCcChHHHHHHHHHHHHHhCChhhhCCCCCCHHHhcc
Confidence 2368999999999987754 2 2489999999999999999999999999999999999999999999933
No 2
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=1.5e-76 Score=609.20 Aligned_cols=429 Identities=32% Similarity=0.589 Sum_probs=323.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
++++|||||+||||.++++|++||++|++|||+|+|++|||.++|++++++.+|+...... ..
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~-----------------~~ 63 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWT-----------------PP 63 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCH-----------------HH
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccc-----------------cc
Confidence 4678999999999999999999999999999999999999999999999998898654210 00
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHH
Q 009247 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l 178 (539)
..+ ..+|+|+|||. |++++++|+++++|+++++.||+||+.++++|+|. +|++++||++++++|+++.+++.+||+|
T Consensus 64 ~~~-~~sR~ynIDL~-PKll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~-~~~l~kVP~sr~dvf~s~~lsl~eKR~l 140 (438)
T PF00996_consen 64 ESL-GRSRDYNIDLI-PKLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYK-NGKLHKVPCSREDVFKSKLLSLFEKRRL 140 (438)
T ss_dssp HHH-HTGGGC-EESS---BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEE-TTEEEE--SSHHHHHC-TTS-HHHHHHH
T ss_pred ccc-ccccceeEecc-hHhhhccCHHHHHHHhCCcccceEEEEcceeEEEe-CCEEeeCCCCHHHhhcCCCccHHHHHHH
Confidence 112 35799999998 99999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred HHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHH
Q 009247 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (539)
||||+++.++....+.... ..+....+|.+++++|++++.+++++.|+++|...+.. -..++.+++.++++|+
T Consensus 141 mkFl~~v~~~~~~~~~~~~----~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~---~~~p~~~~l~ri~~yl 213 (438)
T PF00996_consen 141 MKFLKFVANYEEDDPSTHK----GLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSY---LTEPAREGLERIKLYL 213 (438)
T ss_dssp HHHHHHHHHGCTTBGGGST----TG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGG---GGSBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCCcchhh----ccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCccc---ccccHHHHHHHHHHHH
Confidence 9999999887543221100 11344689999999999999999999999999743221 1236788999999999
Q ss_pred HhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009247 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (539)
Q Consensus 259 ~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~~~ 338 (539)
.|+|+||++ ||+||+||.|||+|+|||+||++||+|+||++|++|.+++ +|++.+|+ ++|++++|++||++|++.
T Consensus 214 ~SlgryG~s--PfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~-s~ge~v~~k~vI~dpsy~- 288 (438)
T PF00996_consen 214 SSLGRYGKS--PFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVK-SEGEVVKAKKVIGDPSYL- 288 (438)
T ss_dssp HHHCCCSSS--SEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEE-ETTEEEEESEEEEEGGGB-
T ss_pred HHHhccCCC--CEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEe-cCCEEEEcCEEEECCccC-
Confidence 999999986 4999999999999999999999999999999999999974 68899998 499999999999999886
Q ss_pred CCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCC--CceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCCc
Q 009247 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL--SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGM 416 (539)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~--~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G~ 416 (539)
++-. ...++++|+|||+++|+++.. ..++|++|+.+.+ ..++||++++|+++++||+|+
T Consensus 289 p~~v-----------------~~~~~V~RaI~Il~~pi~~t~~~~s~~IiiP~~~~~--~~~dIyv~~~ss~~~~CP~G~ 349 (438)
T PF00996_consen 289 PEKV-----------------KKTGQVSRAICILDHPIPNTEDASSVQIIIPQSQVG--RKSDIYVLQLSSSTGVCPKGQ 349 (438)
T ss_dssp GCGE-----------------EEEEEEEEEEEEESS-STTSTT-SSEEEEE-GGGCT--SSS-EEEEEEEGGGTSS-TT-
T ss_pred cccc-----------------cccceEEEEEEEEcCCCCCCCCCceEEEecCCcccC--CCCCeEEEEECCCccccCCCc
Confidence 3211 124689999999999998643 3467789987765 356799999999999999999
Q ss_pred EEEEEEEeecCccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeE-eecCCCCCCcEEEcCCCCC
Q 009247 417 FVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYI-QDLSLGQFGSIISTPTPDG 495 (539)
Q Consensus 417 ~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~i~~~~~~~~ 495 (539)
||+|+||..++ ++++++|+++++.|... . ...|+..-. .+...+..+||+++.++|+
T Consensus 350 yi~~~St~~~t-~~p~~eL~~~l~lL~~i------------------~---e~f~~v~~~~~p~~~~~~~~i~is~~~da 407 (438)
T PF00996_consen 350 YIAYVSTTVET-SNPEEELEPALELLGPI------------------E---EKFVSVSDLYEPTDDGTDDNIFISKSYDA 407 (438)
T ss_dssp EEEEEEEEE-S-S-HHHHTHHHHHTT-SE------------------S---EEEEEEEEEEEESSSSTTTSEEE-----S
T ss_pred EEEEEEeccCC-CCcHHHHHHHHHhhccH------------------H---HHhcchhhcccccCCCccCceEEcCCCCc
Confidence 99999998765 48999999999865431 1 123433322 1334566799999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCC-CCC
Q 009247 496 NLNYNDLLDATEKLYRKLYPNE-ELF 520 (539)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~-~f~ 520 (539)
+++|+.++++++++|++|+|.+ +|-
T Consensus 408 t~hfe~~~~dv~~~~~~~~g~~~~~~ 433 (438)
T PF00996_consen 408 TSHFETTCEDVLDIYKRITGKDLDLS 433 (438)
T ss_dssp -SBSHHHHHHHHHHHHHHHSS-----
T ss_pred ccchHHHHHHHHHHHHHhhCCccccc
Confidence 9999999999999999999987 653
No 3
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=2.6e-70 Score=571.13 Aligned_cols=430 Identities=28% Similarity=0.491 Sum_probs=358.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
|+++||||||||||+||++|++||++|+||+|||+|++|||+++|++++++..|+...... .
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~------------------~ 62 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETP------------------P 62 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCC------------------c
Confidence 4678999999999999999999999999999999999999999999999875554322110 0
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHH
Q 009247 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l 178 (539)
+.+ ..+|.|++||. |++++++|.++++|+++++.+|+||+.++..|++..+|+++++|+++.++|+++.+++.+||++
T Consensus 63 ~~~-~~~r~~~iDL~-Pk~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l 140 (443)
T PTZ00363 63 ESL-GRNRDWNVDLI-PKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRC 140 (443)
T ss_pred hhc-ccccccccccC-CeeeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHH
Confidence 112 24689999996 9999999999999999999999999999999988348899999999999999999999999999
Q ss_pred HHHHHHHhcccccCccccccccccc--cccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHH
Q 009247 179 MRFFKLVQGHLSLDESEENNVRISE--EDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~ 256 (539)
|||++++.++....+. .+. ++...|+.+||+++++++.+++++.+++++...+.. .+.++..++.++++
T Consensus 141 ~kfl~~v~~~~~~~~~------~~~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~---~~~pa~~tl~ri~~ 211 (443)
T PTZ00363 141 KNFLQYVSNYDENDPE------THKGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDY---LNKPAIETVMRIKL 211 (443)
T ss_pred HHHHHHHHhhccCChh------hhcccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhccccc---ccCCHHHHHHHHHH
Confidence 9999999877432211 111 234689999999999999999999888887521110 11357788999999
Q ss_pred HHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009247 257 YNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 257 ~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~ 336 (539)
|+.|+++||.+ +++||+||+++|+|+|||.++++||+|+|+++|++|..+ +++++++|++++|++++|++||++|++
T Consensus 212 y~~S~~~~g~~--p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~-~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 212 YMDSLSRYGKS--PFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFD-ENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHhhccCC--cceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEc-CCCeEEEEEECCCcEEECCEEEECccc
Confidence 99999999964 488999999999999999999999999999999999887 257888999999999999999999988
Q ss_pred CCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCC--CCceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCC
Q 009247 337 TVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD--LSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPL 414 (539)
Q Consensus 337 ~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~--~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~ 414 (539)
. |... ...++|+|+|||+++|++.. .+.++|+||+.+++. .+.||++++|+++++||+
T Consensus 289 ~-p~~~-----------------~~~~~v~R~i~i~~~pi~~~~~~~~~~i~~P~~~~~~--~~~i~v~~~s~~~~~cp~ 348 (443)
T PTZ00363 289 F-PDKV-----------------KKVGKVIRCICILNHPIPNTNNANSCQIIIPQKQLGR--KNDIYIMLVSSNHGVCPK 348 (443)
T ss_pred c-cccc-----------------ccccEEEEEEEEEcccccccCcCccEEEEECCcccCC--CCCEEEEEecCCCCcCCC
Confidence 6 3311 13678999999999999652 245789999998764 467999999999999999
Q ss_pred CcEEEEEEEeecCccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeEeecCCCCCCcEEEcCCCC
Q 009247 415 GMFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGQFGSIISTPTPD 494 (539)
Q Consensus 415 G~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 494 (539)
|+||+|+||..++ .+++++|+++++.|... ..+ -+.|+-.|.+. ..+..+||++|++||
T Consensus 349 g~~i~~~st~~~t-~~~~~~l~~~~~~l~~~------------------~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~d 407 (443)
T PTZ00363 349 GKYIAIISTTVET-NNPEKEIEPALKLLGPI------------------EEK-FVSISDLYEPT-EDGKKDNIFISKSYD 407 (443)
T ss_pred CcEEEEEEEecCC-CCHHHHHHHHHHHhccc------------------hhe-EEecccccccc-ccCCCCCEEEeCCCC
Confidence 9999999998876 59999999999999852 112 34555555532 355669999999999
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCCC
Q 009247 495 GNLNYNDLLDATEKLYRKLYPNEELFP 521 (539)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~i~~~~~f~p 521 (539)
.+++|+.++++|+++|++|+|.+=.|.
T Consensus 408 ~~~~~e~~~~~~~~~~~~~~~~~~~~~ 434 (443)
T PTZ00363 408 ATSHFESATEDVLDLYKRITGKDLDLT 434 (443)
T ss_pred ccccHHHHHHHHHHHHHHhhCCcceec
Confidence 999999999999999999999983333
No 4
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-62 Score=474.54 Aligned_cols=424 Identities=29% Similarity=0.505 Sum_probs=351.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
+.+|||||+|||+.+++.+++||++|++|+|+|||++|||-.+|+++.++.+|+........ +
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~-----------------~ 64 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPP-----------------E 64 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCc-----------------c
Confidence 45699999999999999999999999999999999999999999999998888874421000 0
Q ss_pred ccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHHH
Q 009247 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (539)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l~ 179 (539)
.....|.|++||. |+++++.++++++|++.++.+|++|+.+...|+|. +|++++||.++.++|+++.|++.+||++|
T Consensus 65 -~~~~~rd~nvDLi-PK~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~-~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~ 141 (440)
T KOG1439|consen 65 -KLGRDRDWNVDLI-PKFLMANGELVKILIHTGVTRYLEFKSISGSFVYK-KGKIYKVPATEAEALTSPLMGLFEKRRVM 141 (440)
T ss_pred -ccccccccchhhc-hHhhhccchHHHHHHHhchhhheEEEeecceEEEE-CCeEEECCCCHHHHhcCCccchhHHHHHH
Confidence 1135789999998 99999999999999999999999999999999987 77999999999999999999999999999
Q ss_pred HHHHHHhcccccCcccccccccccc-ccC-CcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHH
Q 009247 180 RFFKLVQGHLSLDESEENNVRISEE-DLD-SPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (539)
Q Consensus 180 kfl~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~ 257 (539)
||+.++.++.++.+. .+.. +.. .++.+++.++++....+++..+++++...+.. -..++.+++.++++|
T Consensus 142 kFl~~V~n~~e~~~~------~~~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~---ld~p~~~~~~ri~~Y 212 (440)
T KOG1439|consen 142 KFLKFVLNYDEEDPK------TWQGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSY---LDQPAKETLERILLY 212 (440)
T ss_pred HHHHHHhhhhhhccc------cccccccccchHHHHHHHhcccccceeeeeeeeEEEecchh---ccCccHHHHHHHHHH
Confidence 999999987554332 1222 222 38999999999999999998888777543311 124788999999999
Q ss_pred HHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCC
Q 009247 258 NSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFT 337 (539)
Q Consensus 258 ~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~~ 337 (539)
++|+++||+++ ++||+||.|||+|+|||++|+.||+|+||.++.+|...+ +|++.+|+ +.++..+|+++|++|+|.
T Consensus 213 ~~S~~~yg~~~--ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk-~~~~v~~~k~vi~dpSY~ 288 (440)
T KOG1439|consen 213 VRSFARYGKSP--YLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVK-SGGEVAKCKKVICDPSYF 288 (440)
T ss_pred HHHHhhcCCCc--ceecccCcchhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEe-cCCceeecceEEecCccc
Confidence 99999999865 899999999999999999999999999999999998853 68888887 567778999999999986
Q ss_pred CCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCC--CCCceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCC
Q 009247 338 VPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP--DLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (539)
Q Consensus 338 ~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~--~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G 415 (539)
+.- ....++++|++||+++|... +.+.++++||+.+++ ..+.|||..+|++.++||+|
T Consensus 289 -~~~-----------------~k~vg~viR~iCIl~hpi~~t~~~~S~qiiipq~q~~--rksdi~v~~~ss~~~vcpeG 348 (440)
T KOG1439|consen 289 -PQK-----------------VKKVGQVIRAICILSHPIPNTNDAESAQIIIPQFQVG--RKSDIYVFGLSSAHNVCPEG 348 (440)
T ss_pred -hHH-----------------HHhhhheeeeeEEecCCcCcCCccceeeEEechhhhC--CcccEEEEEeccCCCcCCCc
Confidence 321 01245799999999988653 446789999988776 46899999999999999999
Q ss_pred cEEEEEEEeecCccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeEeecCCCCCCcEEEcCCCCC
Q 009247 416 MFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGQFGSIISTPTPDG 495 (539)
Q Consensus 416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 495 (539)
+||+|+||..++ .+++.++.++++.|-.. .++ -+=.+-.|. ....+...|+++...+|+
T Consensus 349 ~yia~vsT~~Et-~~pE~ei~~~lellg~~------------------~e~-Fv~i~d~y~-p~~~~~~~~~f~s~syDa 407 (440)
T KOG1439|consen 349 KYIAYVSTTVET-PNPEVEILPGLELLGPI------------------DEK-FVGISDLYE-PVDDGTESNIFISTSYDA 407 (440)
T ss_pred eEEEEEEeccCC-CChHHhhhhHHHhhCch------------------hhh-hccccceEE-ecccCccceEEEEcccCC
Confidence 999999998766 48899999999988631 000 000111222 233456688999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCC
Q 009247 496 NLNYNDLLDATEKLYRKLYPNE 517 (539)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~ 517 (539)
+.+|+.+..+++.+|+++.+.+
T Consensus 408 T~HFet~~~dv~~i~~~~~~~~ 429 (440)
T KOG1439|consen 408 TTHFETTVYDVLDIYKRLTGKE 429 (440)
T ss_pred CCchHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999986
No 5
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-57 Score=437.07 Aligned_cols=425 Identities=28% Similarity=0.479 Sum_probs=346.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
.+.|||||+|||+.+++.+++|+++|++|+|+|+|++||+-.+|+++.++..|++.+.....
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~------------------ 65 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPS------------------ 65 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhcccc------------------
Confidence 35799999999999999999999999999999999999999999999999999877632100
Q ss_pred ccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHHH
Q 009247 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLM 179 (539)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l~ 179 (539)
.....|.|++||. |+++++.++++.+|++.++.+|++|+.+...|+|. +|+++++|.++.++|+++.|++.+||.+|
T Consensus 66 -k~~~drd~~iDL~-PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~-~~k~~kVP~ne~ei~~s~~lsL~eKr~vm 142 (434)
T COG5044 66 -KGGGDRDLNIDLI-PKFLFANSELLKILIETGVTEYLEFKQISGSFLYR-PGKIYKVPYNEAEIFTSPLLSLFEKRRVM 142 (434)
T ss_pred -ccccccccchhhc-hhhhcccchHHHHHHHhChHhheeeeeccccEEec-CCcEEECCccHHhhhcCCCcchhhHHHHH
Confidence 1124689999998 99999999999999999999999999999999987 67999999999999999999999999999
Q ss_pred HHHHHHhcccccCccccccccccccccCCcHHHHHH-hcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHH
Q 009247 180 RFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLT-KMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYN 258 (539)
Q Consensus 180 kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~ 258 (539)
||++++..+.+.. ...-..+.++++.+++. +|+++.....++.|++|++. +.+ +++++++.++.+|+
T Consensus 143 rFl~~V~n~~~~~------~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~l-dl~-----~p~re~~erIl~Y~ 210 (434)
T COG5044 143 RFLKWVSNYAEQK------STLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSL-DLD-----IPAREALERILRYM 210 (434)
T ss_pred HHHHHHHhHHhhh------hhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhc-ccc-----CCchHHHHHHHHHH
Confidence 9999998885421 11112355688888886 59999999999999998862 332 57899999999999
Q ss_pred HhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCCCC
Q 009247 259 SSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSFTV 338 (539)
Q Consensus 259 ~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~~~ 338 (539)
+|++.||.+| ++||+||.+||+|+|||.+++.||+|+||+++.+|... +.+.+|. .++.++.|.+||.+|++.
T Consensus 211 ~Sf~~yg~~p--yLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~t---k~v~~v~-~~~~~~ka~KiI~~~~~~- 283 (434)
T COG5044 211 RSFGDYGKSP--YLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINET---KDVETVD-KGSLTQKAGKIISSPTYF- 283 (434)
T ss_pred HhhcccCCCc--ceeeccCchhhhHHHHHhhhccCceeecCcchhhhccc---cceeeee-cCcceeecCcccCCcccc-
Confidence 9999999755 99999999999999999999999999999999998653 2234665 577789999999998875
Q ss_pred CCCCccchhhhhhhhhhhccCCCCceEEEEEEEec-CC--CCCCCCceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCC
Q 009247 339 PGSLASSHQQLQESFQAFSLSDNKGKVARGICITR-SS--LKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLG 415 (539)
Q Consensus 339 ~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~-~~--l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G 415 (539)
+.-. ..-+ ....+.|++||.. .| +....+.++++|||.++.. .+.|++..+|++++.||+|
T Consensus 284 ~~~~-~~~~-------------q~yriiRa~Ci~~~h~~~~~~~~ds~~iif~~~~lk~--~~~i~v~~lgs~~~~CPEG 347 (434)
T COG5044 284 REDS-KSVG-------------QFYRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKR--KNDIQVAGLGSGSEVCPEG 347 (434)
T ss_pred cccc-cccc-------------hhhhhhHhhhhhhcCccccccccccceeeechhhhcc--cCceEEEEecCCCCCCCCc
Confidence 3210 0000 1135899999976 44 4455577899999998875 4569999999999999999
Q ss_pred cEEEEEEEeecCccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeEeecCCCCCCcEEEcCCCCC
Q 009247 416 MFVLYFSALCDEVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLSLGQFGSIISTPTPDG 495 (539)
Q Consensus 416 ~~vi~~st~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 495 (539)
+||+|+||..++ ..++.++.++++.|..... .. ...+ .+|. ... ..++++.....|+
T Consensus 348 y~l~yisT~~et-~~~e~ei~~~lell~~~~e-----~~--------~~~e--~iyq-----~~e--d~~~~~~~~s~De 404 (434)
T COG5044 348 YYLAYISTIDET-PTPEDEILAALELLGPSVE-----KF--------VDVE--EIYQ-----PDE--DTNQVYLSDSVDE 404 (434)
T ss_pred eEEEEEEeccCC-CChHHHHHHHHHhhcchhh-----cc--------ccce--eeee-----ccc--ccceeEEeccccc
Confidence 999999997765 4788899999997764210 00 1111 1221 222 2578999999999
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCCCC
Q 009247 496 NLNYNDLLDATEKLYRKLYPNEELFPET 523 (539)
Q Consensus 496 ~~~~~~~~~~~~~~~~~i~~~~~f~p~~ 523 (539)
..+|+..-.+.|.+|+++.+-+-||+..
T Consensus 405 ~~~~e~l~~~i~~~y~~~t~~~~vfd~~ 432 (434)
T COG5044 405 SSHFESLTYEIKGIYKRFTGTPLVFDQR 432 (434)
T ss_pred cccHHHHHHHHHHHHHhhcCCccccccC
Confidence 9999999999999999999999888754
No 6
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.97 E-value=1.2e-27 Score=258.40 Aligned_cols=442 Identities=14% Similarity=0.128 Sum_probs=255.1
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccccC
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQH 104 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (539)
|||||||++||+||++|+++|++|+||||++++||+++|++.+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~------------------------------------- 43 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD------------------------------------- 43 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC-------------------------------------
Confidence 6999999999999999999999999999999999999997653
Q ss_pred CCceEEecCCCeEEecChHHHHHHHhcC--ccccccceecccee-eEccCCceeecCCCHHHhhhc-cCCChHHHHHHHH
Q 009247 105 PRNFNLDVSGPRVLFCADHAVDLMLKSG--ASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLMEKNQLMR 180 (539)
Q Consensus 105 ~~~~~~dl~Gp~ll~~~~~l~~~l~~~~--~~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~ls~~~k~~l~k 180 (539)
+|.+|. |++++...+.+.+++...+ +.++++|...++.+ ++..+|+.+.++.+....... ..+++.+...+.+
T Consensus 44 --G~~fD~-G~~~~~~~~~~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 120 (502)
T TIGR02734 44 --GFRFDT-GPTVITMPEALEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRR 120 (502)
T ss_pred --CeEEec-CCeEEccccHHHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHH
Confidence 466777 5888776666666777776 35678888877655 333467777788765432211 1234555556666
Q ss_pred HHHHHhcccc-------cCccccc--c-----ccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhc
Q 009247 181 FFKLVQGHLS-------LDESEEN--N-----VRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLK 246 (539)
Q Consensus 181 fl~~~~~~~~-------~~~~~~~--~-----~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s 246 (539)
|++.++.... ..+.... . ......+...++.+|++++..++.++.++.+..... ..++ .+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~--g~~p--~~~~ 196 (502)
T TIGR02734 121 FLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFL--GGNP--FRTP 196 (502)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceee--ccCc--ccch
Confidence 6654433211 0000000 0 001122356899999999878888888765311111 1111 1112
Q ss_pred chhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEE
Q 009247 247 TRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDIL 326 (539)
Q Consensus 247 ~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~ 326 (539)
+. ..+..+.. ..+ | +++|.+|++.++++|.+.++..|++|+++++|++|..+ ++++++|++.+|+++.
T Consensus 197 ~~---~~l~~~~~---~~~---g-~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~V~~~~g~~~~ 264 (502)
T TIGR02734 197 SI---YALISALE---REW---G-VWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--GGRATAVHLADGERLD 264 (502)
T ss_pred HH---HHHHHHHH---hhc---e-EEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--CCEEEEEEECCCCEEE
Confidence 21 11111111 111 1 56899999999999999999999999999999999887 6778899999999999
Q ss_pred cCEEEECCC--CCCCCCCccchhhhhhhh-hhhccCCCCceEEEEEEEec---CCCCCCCCceEEEeCCCCC--------
Q 009247 327 SHKLVLDPS--FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITR---SSLKPDLSNFLVIFPPRSL-------- 392 (539)
Q Consensus 327 a~~VI~~p~--~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~---~~l~~~~~~~~~~~p~~~~-------- 392 (539)
||+||++.+ .++..|+ +.+ ..+..+ +.+.............+.++ .++.....+.++..+....
T Consensus 265 ad~VI~a~~~~~~~~~l~-~~~-~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (502)
T TIGR02734 265 ADAVVSNADLHHTYRRLL-PNH-PRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRK 342 (502)
T ss_pred CCEEEECCcHHHHHHHhc-Ccc-ccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcC
Confidence 999997533 3323332 211 011111 11111111122222222345 3343222222222231100
Q ss_pred CC-CCCCcEEEEEeCCC-CccCCCCcEEEEEEEeecCc---c-----chHHHHHHHHHHHHhhhhcCCCCCCCCccc---
Q 009247 393 FP-EQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEV---N-----QGKKLLHAALSALQKLLVTGTAGNSSTAQS--- 459 (539)
Q Consensus 393 ~~-~~~~~v~v~~~~~~-~~~cP~G~~vi~~st~~~~~---~-----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~--- 459 (539)
+. ...+.+|+...+.. ++.+|+|+.++++.+.++.. . .-++..+..+++|.+...+.-.+.......
T Consensus 343 g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~~l~~~~~p~l~~~i~~~~~~TP 422 (502)
T TIGR02734 343 GRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEERAIPGLRDRIVVERTFTP 422 (502)
T ss_pred CCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhcCCChhHheEEEEEcCH
Confidence 00 12467888887654 68899999998888765431 0 112344555555554301100000000000
Q ss_pred -cc---ccccCceEEEEEe--eEe-----e-cCCCCCCcEEEcCCCCCC-CChHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q 009247 460 -ED---MEEAKPTLLWSAL--YIQ-----D-LSLGQFGSIISTPTPDGN-LNYNDLLDATEKLYRKLYPNEELFPETTSP 526 (539)
Q Consensus 460 -~~---~~~~~~~~l~~~~--~~~-----~-~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~f~p~~~~~ 526 (539)
+. ....+ -.++..- ..| . ...+..+|+|+|+.-... -..-+++..++.+.+.|+++..+-| .|||
T Consensus 423 ~t~~~~~~~~~-G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~il~~~~~~~-~~~~ 500 (502)
T TIGR02734 423 ADFRDRYNAWL-GSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGAGTHPGAGVPGVLGSAKATAKLMLGDLAPGP-EPDP 500 (502)
T ss_pred HHHHHhcCCCC-ccccchhhchhhcccCCCCCCCCCCCCEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCC-CCCC
Confidence 00 00000 0011000 001 0 012345899999775432 5788899999999999999988887 6665
No 7
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=7e-25 Score=236.00 Aligned_cols=433 Identities=12% Similarity=0.118 Sum_probs=238.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
|||||||+|++||+||++|+++|++|+|||||+++||++++++.+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G---------------------------------- 46 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG---------------------------------- 46 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC----------------------------------
Confidence 6999999999999999999999999999999999999999987654
Q ss_pred cCCCceEEecCCCeEEe------cChHHHHHHHhcCccccccceecccee-eEccCCceeecCCCHHHhhhc-cCCChHH
Q 009247 103 QHPRNFNLDVSGPRVLF------CADHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCSVPDSRAAIFKD-KSLGLME 174 (539)
Q Consensus 103 ~~~~~~~~dl~Gp~ll~------~~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~~-~~ls~~~ 174 (539)
|.+|. |++++. ....+.+.|...+. .+++......+ +...+|....++.+.+..... ....+.+
T Consensus 47 -----~~fd~-g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~ 118 (493)
T TIGR02730 47 -----YRFDV-GASMIFGFGDKGTTNLLTRALAAVGR--KLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHE 118 (493)
T ss_pred -----EEEEe-cchhheecCCcccccHHHHHHHHcCC--cccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchh
Confidence 33444 344432 11223334443332 24443333222 222356566677665433321 2234677
Q ss_pred HHHHHHHHHHHhccccc---C---c--ccccc--------c--cccccccCCcHHHHHHhcCCChhHHHHHHH-HHhccc
Q 009247 175 KNQLMRFFKLVQGHLSL---D---E--SEENN--------V--RISEEDLDSPFAEFLTKMKLPHKIKSIVLY-AIAMAD 235 (539)
Q Consensus 175 k~~l~kfl~~~~~~~~~---~---~--~~~~~--------~--~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~-~i~l~~ 235 (539)
...+.+|++.+...... . . ..... . .....+...++.++++++..++.++.++.+ +.....
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~ 198 (493)
T TIGR02730 119 KEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSV 198 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccC
Confidence 77777777654432110 0 0 00000 0 001123457889999998889999997653 222221
Q ss_pred CCchhhhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEE
Q 009247 236 YDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (539)
Q Consensus 236 ~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~ 315 (539)
.+.. +.+. +..+..+. ...++ .+.||.||+++|+++|.+.++.+||+|+++++|++|..+ ++++.
T Consensus 199 ~p~~----~~p~---~~~~~~~~--~~~~~----g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--~~~~~ 263 (493)
T TIGR02730 199 VPAD----QTPM---INAGMVFS--DRHYG----GINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--NGKAV 263 (493)
T ss_pred CCcc----cchh---hhHHHhhc--ccccc----eEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--CCcEE
Confidence 1111 1111 11111111 11122 257899999999999999999999999999999999887 67889
Q ss_pred EEEeCCCcEEEcCEEEEC--CCCCCCCCCcc--chhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCC-CceEEEeCCC
Q 009247 316 GVRLASGQDILSHKLVLD--PSFTVPGSLAS--SHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPR 390 (539)
Q Consensus 316 gV~l~~G~~i~a~~VI~~--p~~~~~~l~~~--~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~-~~~~~~~p~~ 390 (539)
+|++.+|+++.||+||++ +..++.+|+.. .++.++..++.+. .........+.++.++.+.. ....+.++.-
T Consensus 264 gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~ 340 (493)
T TIGR02730 264 GVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYV---KSPSFLSLHLGVKADVLPPGTECHHILLEDW 340 (493)
T ss_pred EEEeCCCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhcc---CCCceEEEEEEecCccCCCCCCccEEecchh
Confidence 999999999999999975 33343344311 1111111112221 11122333334566543321 1122333321
Q ss_pred CCCCCCCCcEEEEEeCCC-CccCCCCcEEEEEEEeecCc-------c----chHHHHHHHHHHHHhhhhcCCCCCCC--C
Q 009247 391 SLFPEQVTSIRVLQLGGN-LAVCPLGMFVLYFSALCDEV-------N----QGKKLLHAALSALQKLLVTGTAGNSS--T 456 (539)
Q Consensus 391 ~~~~~~~~~v~v~~~~~~-~~~cP~G~~vi~~st~~~~~-------~----~~~~~l~~~~~~l~~~~~~~~~~~~~--~ 456 (539)
.......+.+|+...+.. ++.+|+|++++++.+..... . .-++..+.++++|.... +.-.+... +
T Consensus 341 ~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~-p~l~~~I~~~~ 419 (493)
T TIGR02730 341 TNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKIF-PGLDSAIDYKE 419 (493)
T ss_pred hccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHHC-CChhhcEEEEE
Confidence 111122457888876643 68899999998876643211 0 11234455555554431 10000000 0
Q ss_pred c--ccccc-cccCceEEEEE--------eeEeecCCCCCCcEEEcCCCCC-CCChHHHHHHHHHHHHHhCCC
Q 009247 457 A--QSEDM-EEAKPTLLWSA--------LYIQDLSLGQFGSIISTPTPDG-NLNYNDLLDATEKLYRKLYPN 516 (539)
Q Consensus 457 ~--~~~~~-~~~~~~~l~~~--------~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ 516 (539)
+ .-+.. -...+.-.|.. .+......+..+|+|+|+.-.. .-++-.++.+++.+.++|+++
T Consensus 420 ~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~~pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 420 VGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSCFPGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred eeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 0 00000 00000000100 0100112344589999876442 357888999999999999875
No 8
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.95 E-value=1.9e-24 Score=231.16 Aligned_cols=410 Identities=14% Similarity=0.129 Sum_probs=243.6
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (539)
+.||||||||++||+||..|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~------------------------------ 51 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED------------------------------ 51 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC------------------------------
Confidence 36999999999999999999999 99999999999999999986543
Q ss_pred ccccccCCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHH
Q 009247 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKN 176 (539)
Q Consensus 98 ~~~~~~~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~ 176 (539)
+|.+|+ |+++++... .+.+++.+.|+..++.+......+++..+|+++++|.+..+.++...+++.+|.
T Consensus 52 ---------g~~~e~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 121 (462)
T TIGR00562 52 ---------GYLIER-GPDSFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKL 121 (462)
T ss_pred ---------CEEEec-CccccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhH
Confidence 355677 688876655 488888889987765543333345554238888889876666666666666554
Q ss_pred HHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHH
Q 009247 177 QLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL 256 (539)
Q Consensus 177 ~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~ 256 (539)
.+. +...... ....+.++.+|+++.. .+.+.+.++..+....+..++ +++++..++.++..
T Consensus 122 ~~~--~~~~~~~--------------~~~~d~s~~e~l~~~~-g~~~~~~~~~p~~~~~~~~~~--~~ls~~~~~~~~~~ 182 (462)
T TIGR00562 122 RAG--MDFIRPA--------------SPGKDESVEEFVRRRF-GDEVVENLIEPLLSGIYAGDP--SKLSLKSTFPKFYQ 182 (462)
T ss_pred Hhh--hhhccCC--------------CCCCCcCHHHHHHHhc-CHHHHHHHHHHHhcccccCCH--HHhhHHHHhHHHHH
Confidence 432 1111100 0123589999998643 344433333222222233332 34566655444322
Q ss_pred HHH-------hh------------ccccCCCcc-eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEE
Q 009247 257 YNS-------SI------------GRFQNALGA-LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (539)
Q Consensus 257 ~~~-------s~------------g~~g~~~~~-~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~g 316 (539)
... .+ ..|....+. +.++++|++.|++++++.+. .+.|++|++|++|..+ +++ +.
T Consensus 183 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~--~~~-~~ 257 (462)
T TIGR00562 183 TEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR--GSN-YT 257 (462)
T ss_pred HHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec--CCc-EE
Confidence 111 00 001111122 56789999999999887553 2789999999999875 343 45
Q ss_pred EEeCCCcEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCC-CCCCCceEEEeCCCCCCC
Q 009247 317 VRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSL-KPDLSNFLVIFPPRSLFP 394 (539)
Q Consensus 317 V~l~~G~~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l-~~~~~~~~~~~p~~~~~~ 394 (539)
|++++|+++.||+||+. |...+..++.+..+.. .+.+ ....+..+....+.++++. ........+..|....
T Consensus 258 v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~~~~---~~~l-~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~-- 331 (462)
T TIGR00562 258 LELDNGVTVETDSVVVTAPHKAAAGLLSELSNSA---SSHL-DKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSK-- 331 (462)
T ss_pred EEECCCcEEEcCEEEECCCHHHHHHHhcccCHHH---HHHH-hcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCC--
Confidence 77788888999999974 4433344431111111 2222 2224556777777777763 3222334444443321
Q ss_pred CCCCcEEEEEeC-CCCccCCCCcEEEEEEEeecC-----ccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCce
Q 009247 395 EQVTSIRVLQLG-GNLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT 468 (539)
Q Consensus 395 ~~~~~v~v~~~~-~~~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (539)
...+.+...+ ..++.+|.|..++.+...... ..+.++.++.+++.|.+...... + ...--.
T Consensus 332 --~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~-~----------p~~~~v 398 (462)
T TIGR00562 332 --FAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKVLNINN-E----------PEMLCV 398 (462)
T ss_pred --CceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCC-C----------CcEEEE
Confidence 1122222222 225778999877755442221 12445677777777766532110 0 000001
Q ss_pred EEEEEeeEeecC-------------CCCCCcEEEcCCCCCCCChHHHHHHHHHHHHHhC
Q 009247 469 LLWSALYIQDLS-------------LGQFGSIISTPTPDGNLNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 469 ~l~~~~~~~~~~-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (539)
..|.--|-|... ....++|++|+......+++++|.+++++.+++.
T Consensus 399 ~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~~a~~~~ 457 (462)
T TIGR00562 399 TRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKAAASDVL 457 (462)
T ss_pred eEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHHHHHHHH
Confidence 233322222111 0123689999999889999999999999999884
No 9
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.2e-25 Score=240.47 Aligned_cols=260 Identities=19% Similarity=0.222 Sum_probs=165.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
|..+||||||||++||+||++|||+|++|+|||||+++||+++|++++
T Consensus 1 ~~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-------------------------------- 48 (487)
T COG1233 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-------------------------------- 48 (487)
T ss_pred CCCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--------------------------------
Confidence 456999999999999999999999999999999999999999998754
Q ss_pred ccccCCCceEEecCCCeEEecChHHHHHHHhcC-cccc-ccceecccee-eEccCCceeecCCCHHHhhh-ccCCChHHH
Q 009247 100 LLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSG-ASHY-LEFKSIDATF-MLDADAKLCSVPDSRAAIFK-DKSLGLMEK 175 (539)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~-~~~y-~ef~~~~~~~-~~~~~g~~~~vp~s~~~~f~-~~~ls~~~k 175 (539)
+|.+|. ||+++...... .++...+ ...+ +++...++.+ ++..+|....+..+...... ....++.+.
T Consensus 49 -------Gf~fd~-G~~~~~~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~ 119 (487)
T COG1233 49 -------GFRFDT-GPSWYLMPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDG 119 (487)
T ss_pred -------ceEecc-CcceeecCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccH
Confidence 466777 58776554433 4444444 4444 7777666655 34445677777766543322 123344555
Q ss_pred HHHHHHHHHHhcccc----cCcc-cccc----ccc------cccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchh
Q 009247 176 NQLMRFFKLVQGHLS----LDES-EENN----VRI------SEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEV 240 (539)
Q Consensus 176 ~~l~kfl~~~~~~~~----~~~~-~~~~----~~~------~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~ 240 (539)
..+++++..+.+... .... .... ... .......+..++++.+..++.++..+.+...... ..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~--~~p 197 (487)
T COG1233 120 EALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG--APP 197 (487)
T ss_pred HHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC
Confidence 555555553322100 0000 0000 000 0012235666677665455667776665433221 111
Q ss_pred hhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 009247 241 SEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (539)
Q Consensus 241 ~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~ 320 (539)
.... ++..+..+ +....| +.||+||++.|+++|.+.++++||+|+++++|++|.++ +|+.++|++.
T Consensus 198 ---~~~~--a~~~~~~~--~~~~~G-----~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--~g~g~~~~~~ 263 (487)
T COG1233 198 ---STPP--ALYLLLSH--LGLSGG-----VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--GGKGVGVRTS 263 (487)
T ss_pred ---Cchh--HHHHHHHH--hcccCC-----eeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--CCcceEEecc
Confidence 0011 22222211 111222 67999999999999999999999999999999999998 7777788888
Q ss_pred CCcEEEcCEEEECCCC
Q 009247 321 SGQDILSHKLVLDPSF 336 (539)
Q Consensus 321 ~G~~i~a~~VI~~p~~ 336 (539)
+|+.+.+|.||++...
T Consensus 264 ~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 264 DGENIEADAVVSNADP 279 (487)
T ss_pred ccceeccceeEecCch
Confidence 8878999999976443
No 10
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=4.9e-24 Score=229.65 Aligned_cols=429 Identities=11% Similarity=0.031 Sum_probs=224.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
.||||||+|++||+||++|+++|++|+|||+++++||++++++.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~----------------------------------- 46 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR----------------------------------- 46 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC-----------------------------------
Confidence 589999999999999999999999999999999999999998653
Q ss_pred cCCCceEEecCCCeEEec---ChHHHHHHHhcCccccccceecccee-eEccCC-ceeecCCCHHHhhhc-cCCChHHHH
Q 009247 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATF-MLDADA-KLCSVPDSRAAIFKD-KSLGLMEKN 176 (539)
Q Consensus 103 ~~~~~~~~dl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g-~~~~vp~s~~~~f~~-~~ls~~~k~ 176 (539)
+|.+|. |++++.. .+.+-.++.+.|+... .+...++.+ ++..+| ..+.++.+.+..... ....+.+.+
T Consensus 47 ----G~~fD~-G~~~~~~~~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~ 120 (492)
T TIGR02733 47 ----GFTFDV-GATQVAGLEPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSER 120 (492)
T ss_pred ----CEEEee-cceEEEecCcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHH
Confidence 366777 5887643 3334455666676421 123333332 222355 344555554322110 011223321
Q ss_pred HH---HHHHHHHhcccccCc----c-c----------cccccccccccCCcHHHHHHhc--CCChhHHHHHHHHHhcccC
Q 009247 177 QL---MRFFKLVQGHLSLDE----S-E----------ENNVRISEEDLDSPFAEFLTKM--KLPHKIKSIVLYAIAMADY 236 (539)
Q Consensus 177 ~l---~kfl~~~~~~~~~~~----~-~----------~~~~~~~~~~~~~s~~~~l~~~--~l~~~l~~~~~~~i~l~~~ 236 (539)
.+ .+............+ . . .........+...|+.+|++++ ..++.++.++.....+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~-- 198 (492)
T TIGR02733 121 FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLY-- 198 (492)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhh--
Confidence 11 111110000000000 0 0 0000000123358999999986 45677888765322211
Q ss_pred CchhhhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEE
Q 009247 237 DQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKG 316 (539)
Q Consensus 237 ~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~g 316 (539)
...+ +.+.++..++ .+..+..... | ++||+||++.|+++|++.++.+||+|+++++|++|.++ ++++.+
T Consensus 199 ~~~~-~~~~~~~~~~-----~~~~~~~~~~--G-~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--~~~~~g 267 (492)
T TIGR02733 199 SQED-ADETAALYGA-----TVLQMAQAPH--G-LWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--GGRAGW 267 (492)
T ss_pred ccCC-hhhhhHHHHH-----HHhhccccCC--C-ceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--CCeEEE
Confidence 1111 0111221111 0111111111 2 46899999999999999999999999999999999987 667777
Q ss_pred EEeCCC-----cEEEcCEEEECCC-CCCCCCCccchhhhhhhh-hhhccCCCCceEEEEEEEecCCCCC-C-CCceEEEe
Q 009247 317 VRLASG-----QDILSHKLVLDPS-FTVPGSLASSHQQLQESF-QAFSLSDNKGKVARGICITRSSLKP-D-LSNFLVIF 387 (539)
Q Consensus 317 V~l~~G-----~~i~a~~VI~~p~-~~~~~l~~~~~~~l~~~~-~~l~~~~~~~~v~r~i~i~~~~l~~-~-~~~~~~~~ 387 (539)
|++.+| +++.||+||++.+ ..+.+++.+ +.++..+ +.+.+...........+.+++...+ . ..+....+
T Consensus 268 v~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~--~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~ 345 (492)
T TIGR02733 268 VVVVDSRKQEDLNVKADDVVANLPPQSLLELLGP--LGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLS 345 (492)
T ss_pred EEEecCCCCceEEEECCEEEECCCHHHHHHhcCc--ccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeecc
Confidence 877665 5789999997522 222344321 2222222 2222211111122233445653211 1 11222222
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCccCCCCcEEEEEEEeecCc------c-chH----HHHHHHHHHHHhhhhcCCCCCCC-
Q 009247 388 PPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCDEV------N-QGK----KLLHAALSALQKLLVTGTAGNSS- 455 (539)
Q Consensus 388 p~~~~~~~~~~~v~v~~~~~~~~~cP~G~~vi~~st~~~~~------~-~~~----~~l~~~~~~l~~~~~~~~~~~~~- 455 (539)
.+ ...+|+...+.+++.+|+|++++++++..+.. . +-+ +..+..+++|.... +.-.+...
T Consensus 346 ~~-------~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~~~-p~l~~~i~~ 417 (492)
T TIGR02733 346 DH-------QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGHYF-DLLEENWVH 417 (492)
T ss_pred CC-------CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCccccEEE
Confidence 21 12688877777778899999999888765321 1 111 23444455554321 11000000
Q ss_pred ---Cccccc---ccccCc------eEEEEE-eeEeecCCCCCCcEEEcCCCCCC-CChHHHHHHHHHHHHHhCCC
Q 009247 456 ---TAQSED---MEEAKP------TLLWSA-LYIQDLSLGQFGSIISTPTPDGN-LNYNDLLDATEKLYRKLYPN 516 (539)
Q Consensus 456 ---~~~~~~---~~~~~~------~~l~~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ 516 (539)
.+..+. ....+- ..+.+. .|.. ...+..+|+|+|+.-... -.+-+++..++.+.++|+.+
T Consensus 418 ~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~-~~~t~i~gLyl~G~~~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 418 VELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGL-SSRTPVKGLWLCGDSIHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred EEccCCchHHHHhCCCCcEECCCCcCccccCCcCC-CCCCCCCCeEEecCccCCCCcHHHHHHHHHHHHHHHhhc
Confidence 000000 000000 000000 0111 113445899999774432 46888999999999998754
No 11
>PLN02576 protoporphyrinogen oxidase
Probab=99.94 E-value=1.3e-23 Score=226.63 Aligned_cols=413 Identities=16% Similarity=0.155 Sum_probs=241.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
..++||||||||++||+||++|+++ |++|+|||+++++||+++|++.+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~------------------------------- 58 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED------------------------------- 58 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC-------------------------------
Confidence 4557999999999999999999999 99999999999999999997643
Q ss_pred cccccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceec-cceeeEccCCceeecCCCHHHhhhccCCChHHHHH
Q 009247 99 RLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSI-DATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (539)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~-~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~ 177 (539)
+|.+|. ||+.++...+.+..|.+.++..++.|... ...|++. +|+++++|.+..+.+....+++.+|..
T Consensus 59 --------g~~~d~-G~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~ 128 (496)
T PLN02576 59 --------GFIWEE-GPNSFQPSDPELTSAVDSGLRDDLVFPDPQAPRYVVW-NGKLRPLPSNPIDLPTFDLLSAPGKIR 128 (496)
T ss_pred --------CeEEec-CCchhccCcHHHHHHHHcCChhheecCCCCceEEEEE-CCEEEEcCCChHHhcCcCcCChhHHHH
Confidence 255666 68888777777777777788777666432 2345554 888999998876666666777776654
Q ss_pred HHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHH
Q 009247 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALY 257 (539)
Q Consensus 178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~ 257 (539)
++.-....... . ....+.++.+|+++. +.+.+.+.++..+....+..++ .++|+..++..+..+
T Consensus 129 ~~~~~~~~~~~----~---------~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~--~~lS~~~~~~~~~~~ 192 (496)
T PLN02576 129 AGLGAFGWKRP----P---------PPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDP--SSLSMKAAFPKLWNL 192 (496)
T ss_pred HhHHHhhccCC----C---------CCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCH--HHHhHHHHhHHHHHH
Confidence 43211111010 0 113468999999875 5555555444333222233332 346666555543322
Q ss_pred HHhhc--------cc----------------c-CCCcceEeecCCcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCC
Q 009247 258 NSSIG--------RF----------------Q-NALGALIYPIYGQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNS 311 (539)
Q Consensus 258 ~~s~g--------~~----------------g-~~~~~~~~p~gG~geL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~ 311 (539)
-.+.| +. . ...+.+.++++|++.|+++|++. .| +.|++|++|++|..+ +
T Consensus 193 e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~---l~~~~i~l~~~V~~I~~~--~ 267 (496)
T PLN02576 193 EKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKR---LGKDKVKLNWKVLSLSKN--D 267 (496)
T ss_pred HHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHh---hCcCcEEcCCEEEEEEEC--C
Confidence 11000 00 0 00122567899999999988753 45 789999999999876 3
Q ss_pred CcEEEEEe--CCCc-EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCC------C-
Q 009247 312 GSYKGVRL--ASGQ-DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPD------L- 380 (539)
Q Consensus 312 g~~~gV~l--~~G~-~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~------~- 380 (539)
++.+.|++ .+|+ ++.||+||+. |...+..++.+..+ +..+.+.+ ..+..+..+.+.+++++-.. +
T Consensus 268 ~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~~~---~~~~~l~~-~~~~~~~~v~l~~~~~~~~~~~~~~~~~ 343 (496)
T PLN02576 268 DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPKSP---AAADALPE-FYYPPVAAVTTSYPKEAVKRERLIDGPL 343 (496)
T ss_pred CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhcccCH---HHHHHhcc-CCCCceEEEEEEEchHHcccccccCCCC
Confidence 33123433 3554 6999999974 54443444322222 22222322 23444566666677753211 1
Q ss_pred CceEEEeCCCCCCCCCCCcEEEEEeC-CCCccCCCCcEEEEEEEeecC-----ccchHHHHHHHHHHHHhhhhcCCCCCC
Q 009247 381 SNFLVIFPPRSLFPEQVTSIRVLQLG-GNLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKLLVTGTAGNS 454 (539)
Q Consensus 381 ~~~~~~~p~~~~~~~~~~~v~v~~~~-~~~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~ 454 (539)
.......|+.. ..+.+.+...+ ..+..+|.|..++........ ..+.++.++.+++.|........
T Consensus 344 ~~~g~l~~~~~----~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~---- 415 (496)
T PLN02576 344 EGFGQLHPRKQ----GVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPG---- 415 (496)
T ss_pred CceEEEccCCC----CCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCC----
Confidence 12223333221 11222223222 335678888765543332211 11345566666666655432110
Q ss_pred CCcccccccccCceE----EEEEeeEeecCC------------CCC--CcEEEcCCCCCCCChHHHHHHHHHHHHHhCC
Q 009247 455 STAQSEDMEEAKPTL----LWSALYIQDLSL------------GQF--GSIISTPTPDGNLNYNDLLDATEKLYRKLYP 515 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~----l~~~~~~~~~~~------------~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 515 (539)
..+|.. .|+--+-|.... ... ++|++|.........++++.+++++.++|..
T Consensus 416 ---------~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~~ 485 (496)
T PLN02576 416 ---------APPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAADLVIS 485 (496)
T ss_pred ---------CCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEEeccccCCccHHHHHHHHHHHHHHHHH
Confidence 012221 343222121110 112 6899999999999999999999999999854
No 12
>PRK07233 hypothetical protein; Provisional
Probab=99.94 E-value=3.2e-23 Score=219.85 Aligned_cols=408 Identities=14% Similarity=0.149 Sum_probs=228.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|||||||++||+||..|+++|++|+|||+++++||+++++..+|+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~---------------------------------- 46 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGL---------------------------------- 46 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCc----------------------------------
Confidence 5999999999999999999999999999999999999999776531
Q ss_pred CCCceEEecCCCeEEec-ChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHHHHHH
Q 009247 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMRFF 182 (539)
Q Consensus 104 ~~~~~~~dl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l~kfl 182 (539)
.+|. |.++++. ...+.+++.+.|+.....+......+.+ +|+.++++ +...+++...+++.++..+...+
T Consensus 47 -----~~d~-g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 117 (434)
T PRK07233 47 -----PIER-FYHHIFKSDEALLELLDELGLEDKLRWRETKTGYYV--DGKLYPLG-TPLELLRFPHLSLIDKFRLGLLT 117 (434)
T ss_pred -----chhh-hhhhhccccHHHHHHHHHcCCCCceeeccCceEEEE--CCeEecCC-CHHHHHcCCCCCHHHHHHhHHHH
Confidence 2232 2343332 2367788888887655555443332322 55555443 22344444556666665433322
Q ss_pred HHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHHHhhc
Q 009247 183 KLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIG 262 (539)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~~s~g 262 (539)
...... . ...++...++.+||+++..++..+.++. .+....+..++ +++++...+.++..+...
T Consensus 118 ~~~~~~----~-------~~~~~~~~s~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~-- 181 (434)
T PRK07233 118 LLARRI----K-------DWRALDKVPAEEWLRRWSGEGVYEVFWE-PLLESKFGDYA--DDVSAAWLWSRIKRRGNR-- 181 (434)
T ss_pred Hhhhhc----c-------cccccccccHHHHHHHhcCHHHHHHHHH-HHHhcccCCCc--cccCHHHHHHHHhhhhcc--
Confidence 211110 0 0123456899999998654444444432 22111122221 235665544444322110
Q ss_pred cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009247 263 RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (539)
Q Consensus 263 ~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l 341 (539)
........+.||++|++.|+++|.+.+...|++|+++++|++|..+ +++++.+. .+|+++.||+||++ |...+..+
T Consensus 182 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~--~~~~~~~~-~~~~~~~ad~vI~a~p~~~~~~l 258 (434)
T PRK07233 182 RYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID--GGGVTGVE-VDGEEEDFDAVISTAPPPILARL 258 (434)
T ss_pred ccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc--CCceEEEE-eCCceEECCEEEECCCHHHHHhh
Confidence 0000011267899999999999999999999999999999999876 56665555 57888999999964 43333444
Q ss_pred CccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCCcEEEEEeCC-CCccCCCCcEEEE
Q 009247 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQLGG-NLAVCPLGMFVLY 420 (539)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~~~-~~~~cP~G~~vi~ 420 (539)
+.+..+.. +..+.+ ..+..+....+-+++++.+ ...+.++.... ....+...+. .+..+|+|..+++
T Consensus 259 l~~~~~~~---~~~~~~-~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~g~~~~~ 326 (434)
T PRK07233 259 VPDLPADV---LARLRR-IDYQGVVCMVLKLRRPLTD---YYWLNINDPGA-----PFGGVIEHTNLVPPERYGGEHLVY 326 (434)
T ss_pred cCCCcHHH---Hhhhcc-cCccceEEEEEEecCCCCC---CceeeecCCCC-----CcceEEEecccCCccccCCceEEE
Confidence 32111111 112221 1233344445556776643 22333221111 1112223322 2345667877766
Q ss_pred EEEeecCc-----cchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeEeecC-----------CCCC
Q 009247 421 FSALCDEV-----NQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDLS-----------LGQF 484 (539)
Q Consensus 421 ~st~~~~~-----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~ 484 (539)
++..+... .+.++..+.+++.|.+...... .. ...-.-+++..|.+... ....
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~--------~~---~~~~~~~~r~~~a~~~~~~g~~~~~~~~~~~~ 395 (434)
T PRK07233 327 LPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFD--------RD---DVRAVRISRAPYAQPIYEPGYLDKIPPYDTPI 395 (434)
T ss_pred EeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCC--------hh---heeeEEEEEeccccccccCchhhcCCCcccCc
Confidence 65544321 1335666677777766432000 00 00001112212222111 1234
Q ss_pred CcEEEcCCCC---CCCChHHHHHHHHHHHHHhCCC
Q 009247 485 GSIISTPTPD---GNLNYNDLLDATEKLYRKLYPN 516 (539)
Q Consensus 485 ~~i~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~ 516 (539)
++|++++.-. .....++|+.+++.+.++|+..
T Consensus 396 ~~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 396 EGLYLAGMSQIYPEDRSINGSVRAGRRVAREILED 430 (434)
T ss_pred CCEEEeCCcccCCccCchhHHHHHHHHHHHHHhhh
Confidence 8899998721 2347999999999999999754
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.93 E-value=3.7e-23 Score=221.26 Aligned_cols=406 Identities=12% Similarity=0.142 Sum_probs=231.3
Q ss_pred ccEEEECCChhHHHHHHHHhhC------CCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccc
Q 009247 23 FDLIVIGTGLPESVISAAASAS------GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNY 96 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~------G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (539)
.+|||||||++||+||..|+++ |++|+|||+++++||+++|.+.+
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~----------------------------- 52 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK----------------------------- 52 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-----------------------------
Confidence 3699999999999999999996 37999999999999999997543
Q ss_pred cccccccCCCceEEecCCCeEEecC-hHHHHHHHhcCccccccceeccceeeEccCCceeecCCC--------HHHhhhc
Q 009247 97 ASRLLSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDS--------RAAIFKD 167 (539)
Q Consensus 97 ~~~~~~~~~~~~~~dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s--------~~~~f~~ 167 (539)
+|.+|+ |+++++.. ..+.+++.+.|+..++.+..-...+++. ++.++++|.+ ....++.
T Consensus 53 ----------g~~~e~-G~~~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~p~~~~~~~~~ 120 (463)
T PRK12416 53 ----------DFIMES-GADSIVARNEHVMPLVKDLNLEEEMVYNETGISYIYS-DNTLHPIPSDTIFGIPMSVESLFSS 120 (463)
T ss_pred ----------CEEEec-CcHHHhcCCHHHHHHHHHcCCccceecCCCCceEEEE-CCeEEECCCCCeecCCCChHHhhcC
Confidence 245666 57777544 4567888889987766555444455554 5666665543 2333444
Q ss_pred cCCChHHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcc
Q 009247 168 KSLGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (539)
Q Consensus 168 ~~ls~~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~ 247 (539)
..+++..|...+. ..+ .. . ...+.+.|+.+|+++. +.+.+.+.++..+....+..++ .++++
T Consensus 121 ~~~~~~~~~~~~~--~~~-~~----~--------~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~--~~ls~ 182 (463)
T PRK12416 121 TLVSTKGKIVALK--DFI-TK----N--------KEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKL--NELTM 182 (463)
T ss_pred CcCCHHHHHHhhh--hhc-cC----C--------CCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCc--ccccH
Confidence 4444433322111 111 00 0 0113478999999974 3344333222222222233332 23555
Q ss_pred hhHHHHHHHHHHhhcc-----------c-cCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEE
Q 009247 248 RDGINRLALYNSSIGR-----------F-QNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYK 315 (539)
Q Consensus 248 ~~~l~~~~~~~~s~g~-----------~-g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~ 315 (539)
...+..+..+....+. + +.....+.++++|++.|+++|++.+.. ++|++|++|++|..+ +++ +
T Consensus 183 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~--~~~-~ 257 (463)
T PRK12416 183 ASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ--GDR-Y 257 (463)
T ss_pred HHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc--CCE-E
Confidence 4444443333221111 0 011122678999999999999876543 689999999999876 444 4
Q ss_pred EEEeCCCcEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCC-CCCceEEEeCCCCCC
Q 009247 316 GVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP-DLSNFLVIFPPRSLF 393 (539)
Q Consensus 316 gV~l~~G~~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~-~~~~~~~~~p~~~~~ 393 (539)
.|++.+|+++.||+||++ |...+..++ .++++++.+..+ ....+....+.++++... .....-+++|+.. +
T Consensus 258 ~v~~~~g~~~~ad~VI~a~p~~~~~~ll--~~~~l~~~~~~~----~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~-~ 330 (463)
T PRK12416 258 EISFANHESIQADYVVLAAPHDIAETLL--QSNELNEQFHTF----KNSSLISIYLGFDILDEQLPADGTGFIVTENS-D 330 (463)
T ss_pred EEEECCCCEEEeCEEEECCCHHHHHhhc--CCcchhHHHhcC----CCCceEEEEEEechhhcCCCCCceEEEeeCCC-C
Confidence 677788888999999974 444334443 234455443333 234456666667765321 1123344455432 1
Q ss_pred CCCCCcEEEEEeCCC--CccCCCCcEEEEEEEee--cC-----ccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccc
Q 009247 394 PEQVTSIRVLQLGGN--LAVCPLGMFVLYFSALC--DE-----VNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEE 464 (539)
Q Consensus 394 ~~~~~~v~v~~~~~~--~~~cP~G~~vi~~st~~--~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 464 (539)
..+-...+.+. ...+|++..++.++.-. .. ..+.++..+.+++.|....+... + +.
T Consensus 331 ----~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~-~----------p~ 395 (463)
T PRK12416 331 ----LHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIKG-E----------PE 395 (463)
T ss_pred ----CeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCC-C----------ce
Confidence 11112222222 34567777666654321 10 11334555556666655432110 0 00
Q ss_pred cCceEEEEEeeEeec-------------CCCCCCcEEEcCCCCCCCChHHHHHHHHHHHHHhC
Q 009247 465 AKPTLLWSALYIQDL-------------SLGQFGSIISTPTPDGNLNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 465 ~~~~~l~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (539)
.--..-|+-.+-|.. .....++|++++..-.....+++|.+++++.++|.
T Consensus 396 ~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g~~i~~ai~sg~~aA~~i~ 458 (463)
T PRK12416 396 VVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYGVGIGACIGNGKNTANEII 458 (463)
T ss_pred EEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEeccccccccHHHHHHHHHHHHHHHH
Confidence 000123432111110 01223789999999999999999999999999985
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.93 E-value=1.4e-22 Score=216.19 Aligned_cols=401 Identities=14% Similarity=0.167 Sum_probs=227.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
+|||||||++||+||..|+++| ++|+|||+++++||+++|++.++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g--------------------------------- 48 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--------------------------------- 48 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC---------------------------------
Confidence 6999999999999999999988 89999999999999999976543
Q ss_pred ccCCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceeccceeeEccCCceeecCCCH--------HHhhhccCCCh
Q 009247 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSR--------AAIFKDKSLGL 172 (539)
Q Consensus 102 ~~~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~--------~~~f~~~~ls~ 172 (539)
+.+|+ |++.++..+ .+.+++.+.|+..+..+......+++. +|+++.+|... ...+..+.++.
T Consensus 49 ------~~~d~-G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~-~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T PRK11883 49 ------FPIEL-GPESFLARKPSAPALVKELGLEDELVANTTGQSYIYV-NGKLHPIPPGTVMGIPTSIAPFLFAGLVSP 120 (451)
T ss_pred ------eEEec-ChHHhcCCcHHHHHHHHHcCCccceecCCCCcceEEE-CCeEEECCCCCeeccCCCchhhhcCCCCCH
Confidence 34555 465444333 577888888887654433212234443 67777766421 11111122222
Q ss_pred HHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHH
Q 009247 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (539)
Q Consensus 173 ~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (539)
.++.+.. ..... . ......+.++.+||++. +++...+.++..+....+..++ .++++...+.
T Consensus 121 ~~~~~~~------~~~~~--~-------~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~ 182 (451)
T PRK11883 121 IGKLRAA------ADLRP--P-------RWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGDI--DTLSLRATFP 182 (451)
T ss_pred HHHHHhh------CcccC--C-------CCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCCh--HHccHHHhHH
Confidence 2221110 01100 0 01234568999999863 4554444333333222222222 3355554443
Q ss_pred HHHHHHHhhc-----------ccc-CCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC
Q 009247 253 RLALYNSSIG-----------RFQ-NALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA 320 (539)
Q Consensus 253 ~~~~~~~s~g-----------~~g-~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~ 320 (539)
.+..+....+ ... .....+.++++|++.|+++|++.+... +|++|++|++|..+ ++. +.|++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~--~~~-~~v~~~ 257 (451)
T PRK11883 183 QLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS--GDG-YEIVLS 257 (451)
T ss_pred HHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc--CCe-EEEEEC
Confidence 3332221110 000 001225679999999999987755332 89999999999876 443 457778
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCCc
Q 009247 321 SGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTS 399 (539)
Q Consensus 321 ~G~~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~ 399 (539)
+|+++.||+||++ |...+.++.. ++++.+..+ ...+..+.+..+.+++++...+....+.+++.. ..+
T Consensus 258 ~g~~~~~d~vI~a~p~~~~~~l~~--~~~~~~~~~----~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 326 (451)
T PRK11883 258 NGGEIEADAVIVAVPHPVLPSLFV--APPAFALFK----TIPSTSVATVALAFPESATNLPDGTGFLVARNS-----DYT 326 (451)
T ss_pred CCCEEEcCEEEECCCHHHHHHhcc--ChhHHHHHh----CCCCCceEEEEEEeccccCCCCCceEEEecCCC-----CCc
Confidence 9999999999974 4333344421 222222222 223556677777788875322323334444321 122
Q ss_pred EE-EEEeCC-CCccCCCCcEEEEEEEeecC-----ccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCce--E-
Q 009247 400 IR-VLQLGG-NLAVCPLGMFVLYFSALCDE-----VNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT--L- 469 (539)
Q Consensus 400 v~-v~~~~~-~~~~cP~G~~vi~~st~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 469 (539)
+. +...+. ....+|.|..++.++..... ..+.++.++.+++.|.+..... .+|. .
T Consensus 327 ~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~---------------~~~~~~~~ 391 (451)
T PRK11883 327 ITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT---------------GDPEFTIV 391 (451)
T ss_pred EEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC---------------CCceEEEE
Confidence 32 222232 24678889888777653221 1134566666666666543211 0111 1
Q ss_pred -EEEEeeEeecC------------CCCCCcEEEcCCCCCCCChHHHHHHHHHHHHHhC
Q 009247 470 -LWSALYIQDLS------------LGQFGSIISTPTPDGNLNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 470 -l~~~~~~~~~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (539)
-|.--|.+... ....+++++++.-....+.++++.+++++.++|.
T Consensus 392 ~rw~~a~p~~~~~~~~~~~~l~~~l~~~~~l~~aG~~~~g~~i~~av~sg~~~a~~i~ 449 (451)
T PRK11883 392 QRWKEAMPQYGVGHIERVAELRAGLPHYPGLYVAGASFEGVGLPDCIAQAKRAAARLL 449 (451)
T ss_pred eecCccCCCCCccHHHHHHHHHHhhhhCCCEEEECcccCCccHHHHHHHHHHHHHHHH
Confidence 13222221110 0113589999988888899999999999999885
No 15
>PLN02612 phytoene desaturase
Probab=99.92 E-value=6.5e-22 Score=215.15 Aligned_cols=432 Identities=13% Similarity=0.132 Sum_probs=245.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
..+|+|||+|++||+||.+|+++|++|+|+|+++++||++.++...
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~---------------------------------- 138 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE---------------------------------- 138 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC----------------------------------
Confidence 4789999999999999999999999999999999999999987531
Q ss_pred ccCCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceeccceeeEc-cCCcee--e----cCCC---HHHhhh-ccC
Q 009247 102 SQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLD-ADAKLC--S----VPDS---RAAIFK-DKS 169 (539)
Q Consensus 102 ~~~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~-~~g~~~--~----vp~s---~~~~f~-~~~ 169 (539)
.+|.+|. |+++++... .+.++|.+.|+...++|......+.+. .++... . .|.. ..++++ ...
T Consensus 139 ----~G~~~D~-G~h~~~g~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ 213 (567)
T PLN02612 139 ----DGDWYET-GLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEM 213 (567)
T ss_pred ----CCCEEcC-CceEEeCCCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCcc
Confidence 1234555 577765433 577888889987777766544333221 112222 1 2222 122332 234
Q ss_pred CChHHHHHHHH-HHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcch
Q 009247 170 LGLMEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (539)
Q Consensus 170 ls~~~k~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~ 248 (539)
+++.+|.++.. ++...... .....++.+.|+.+|+++.+.++.+.+-++..+...-+..++ +++|+.
T Consensus 214 ls~~~kl~~~~~~~~~~~~~----------~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p--~~~S~~ 281 (567)
T PLN02612 214 LTWPEKIKFAIGLLPAIVGG----------QAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINP--DELSMQ 281 (567)
T ss_pred CCHHHHHHHHHhhhHHhccc----------chhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCH--HHhhHH
Confidence 45555544322 11110000 011234557899999999999987776333222111112221 345666
Q ss_pred hHHHHHHHHHHhhccccCCCcceEeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 009247 249 DGINRLALYNSSIGRFQNALGALIYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (539)
Q Consensus 249 ~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~-geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a 327 (539)
..+..+..++. .++|. ...|+.|+. ..|+++|.+.++..||+|++|++|++|..+. ++++++|++.+|+++.|
T Consensus 282 ~~l~~l~~~l~--~~~gs---~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~a 355 (567)
T PLN02612 282 CILIALNRFLQ--EKHGS---KMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEG 355 (567)
T ss_pred HHHHHHHHHHh--ccCCc---eEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEEC
Confidence 55555554433 12221 255676664 5789999998888999999999999998863 56677888889999999
Q ss_pred CEEEEC-CCCCCCCCCccch--hhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCCcEEEEE
Q 009247 328 HKLVLD-PSFTVPGSLASSH--QQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRVLQ 404 (539)
Q Consensus 328 ~~VI~~-p~~~~~~l~~~~~--~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v~~ 404 (539)
|+||++ |...+..++.... .+++..++.+ ....+.+..+.+++++....+.. ++..... ..++...
T Consensus 356 d~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l----~~~~v~~v~l~~dr~~~~~~~~~--~~~~~~~-----~~~~~d~ 424 (567)
T PLN02612 356 DVYVSATPVDILKLLLPDQWKEIPYFKKLDKL----VGVPVINVHIWFDRKLKNTYDHL--LFSRSPL-----LSVYADM 424 (567)
T ss_pred CEEEECCCHHHHHHhCcchhcCcHHHHHHHhc----CCCCeEEEEEEECcccCCCCCce--eecCCCC-----ceeehhh
Confidence 999974 4444344432211 1223222222 23446777777899874322222 2221110 1222211
Q ss_pred eCCCCccCCCCcEEEEEEEeecC----ccchHHHHHHHHHHHHhhhhcCCCCCCCCcc-cccccccCceEEEEEeeE---
Q 009247 405 LGGNLAVCPLGMFVLYFSALCDE----VNQGKKLLHAALSALQKLLVTGTAGNSSTAQ-SEDMEEAKPTLLWSALYI--- 476 (539)
Q Consensus 405 ~~~~~~~cP~G~~vi~~st~~~~----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--- 476 (539)
......+.|.|+.++.+. .... ..+.++.++.+++.|................ ........|.-.|+..-.
T Consensus 425 S~~~~~~~~~~~~ll~~~-~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~~~~~pg~~~ 503 (567)
T PLN02612 425 STTCKEYYDPNKSMLELV-FAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEP 503 (567)
T ss_pred hhcchhhcCCCCeEEEEE-EEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCceEEeCCCCcc
Confidence 111112335566666654 2221 1245778888888887765322100000000 000000112111111000
Q ss_pred -eecCCCCCCcEEEcCCCCCC---CChHHHHHHHHHHHHHhCCCCCCCCC
Q 009247 477 -QDLSLGQFGSIISTPTPDGN---LNYNDLLDATEKLYRKLYPNEELFPE 522 (539)
Q Consensus 477 -~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~f~p~ 522 (539)
.....+..+|+++++.-... -+.++|+.+++.+.++|+.+.+++..
T Consensus 504 ~rp~~~tPi~~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~~~~ 553 (567)
T PLN02612 504 CRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLAA 553 (567)
T ss_pred cCccccCccCCEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 01122334789999866543 47888999999999999977766543
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.92 E-value=8.1e-22 Score=210.34 Aligned_cols=419 Identities=14% Similarity=0.135 Sum_probs=232.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|+|||+|++||+||.+|+++|++|+|+|+++++||+++|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~------------------------------------ 44 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE------------------------------------ 44 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC------------------------------------
Confidence 58999999999999999999999999999999999999986421
Q ss_pred CCCceEEecCCCeEEecC-hHHHHHHHhcCccccccceeccceeeE-ccCCcee--ecC---CCH---HHhhh-ccCCCh
Q 009247 104 HPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFML-DADAKLC--SVP---DSR---AAIFK-DKSLGL 172 (539)
Q Consensus 104 ~~~~~~~dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~-~~~g~~~--~vp---~s~---~~~f~-~~~ls~ 172 (539)
.+|.+|. |+++++.. ..+.++|.+.|+...+.|......+.. ..++... ..| ... .++++ ...+++
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (453)
T TIGR02731 45 --DGDWYET-GLHIFFGAYPNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTW 121 (453)
T ss_pred --CCCEEEc-CcceeccCCchHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCH
Confidence 1234566 56766443 367788888888776666543332221 1112221 112 211 12222 224555
Q ss_pred HHHHHHHH-HHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHH--HhcccCCchhhhhhhcchh
Q 009247 173 MEKNQLMR-FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYA--IAMADYDQEVSEYVLKTRD 249 (539)
Q Consensus 173 ~~k~~l~k-fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~--i~l~~~~~~~~~~~~s~~~ 249 (539)
.+|.++.. +....... .+...++.+.|+.+|+++.+.++.+.+.++.. .++. ..++ .++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~--~~~p--~~~S~~~ 187 (453)
T TIGR02731 122 PEKIKFAIGLLPAIVRG----------QKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALN--FINP--DELSMTV 187 (453)
T ss_pred HHHHHHHHHhHHHHhcC----------ccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHC--CCCH--HHHHHHH
Confidence 66654332 21111100 01123456799999999999999877644322 2222 2222 3467777
Q ss_pred HHHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-----
Q 009247 250 GINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ----- 323 (539)
Q Consensus 250 ~l~~~~~~~~s~g~~g~~~~~~~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~----- 323 (539)
.+..+..++. ..+|. ...+..+| ++.++++|.+.++..|++|++|++|++|..+ +++++++|++.+|+
T Consensus 188 ~~~~l~~~~~--~~~g~---~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~-~~~~v~~v~~~~~~~~~~~ 261 (453)
T TIGR02731 188 VLTALNRFLQ--ERHGS---KMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLN-EDGSVKHFVLADGEGQRRF 261 (453)
T ss_pred HHHHHHHHHh--cCCCC---eeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEEC-CCCCEEEEEEecCCCCcee
Confidence 6666555443 22331 13345555 5789999999999999999999999999865 26678888887766
Q ss_pred EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCCCCCCCCCCcEEE
Q 009247 324 DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFPEQVTSIRV 402 (539)
Q Consensus 324 ~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~~~~~~v~v 402 (539)
++.||.||++ |...+.+++ +....-....+.+.. .....+.++.+.+++++.... .+.+++.... .+ .
T Consensus 262 ~~~a~~VI~a~p~~~~~~lL-~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~~~~~~---~~~~~~~~~~-----~~-~ 330 (453)
T TIGR02731 262 EVTADAYVSAMPVDIFKLLL-PQPWKQMPFFQKLNG-LEGVPVINVHIWFDRKLTTVD---HLLFSRSPLL-----SV-Y 330 (453)
T ss_pred EEECCEEEEcCCHHHHHhhC-chhhhcCHHHHHhhc-CCCCcEEEEEEEEccccCCCC---ceeeeCCCcc-----ee-e
Confidence 7999999964 433344553 211100111122221 124467788888999875322 2233322110 01 1
Q ss_pred EEeCCC-CccCCCCcEEEEEEEeec---CccchHHHHHHHHHHHHhhhhcC--CCCCCCCcccccccccCceEEEEEeeE
Q 009247 403 LQLGGN-LAVCPLGMFVLYFSALCD---EVNQGKKLLHAALSALQKLLVTG--TAGNSSTAQSEDMEEAKPTLLWSALYI 476 (539)
Q Consensus 403 ~~~~~~-~~~cP~G~~vi~~st~~~---~~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 476 (539)
...+.. ...+|+|+.++.+..... ...+.++..+.+++.|.++.... ..+....+... ....|...|.....
T Consensus 331 ~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~--~~~~p~a~~~~~pg 408 (453)
T TIGR02731 331 ADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYK--VVKTPRSVYKTTPG 408 (453)
T ss_pred cchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEE--EEECCCceeccCCC
Confidence 111111 123444556666543211 11245677777777777664311 00000000000 00011111211111
Q ss_pred ee----cCCCCCCcEEEcCCCCCC---CChHHHHHHHHHHHHHhC
Q 009247 477 QD----LSLGQFGSIISTPTPDGN---LNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 477 ~~----~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~i~ 514 (539)
+. ......+|+++++.-... -..++||.+++++.+.|+
T Consensus 409 ~~~~~~~~~~p~~~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 409 RQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ChhhCccccCccCCEEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 00 012335789999865432 267889999999999875
No 17
>PRK07208 hypothetical protein; Provisional
Probab=99.91 E-value=4.1e-21 Score=206.40 Aligned_cols=410 Identities=14% Similarity=0.137 Sum_probs=224.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
|...||||||||++||+||..|+++|++|+|+|+++++||++.|...++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g------------------------------- 50 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG------------------------------- 50 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC-------------------------------
Confidence 5678999999999999999999999999999999999999999865432
Q ss_pred ccccCCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHH
Q 009247 100 LLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l 178 (539)
|.+|+ |+++++..+ .+.+++.+.+....+..... ..+++. +|++..+|.+..+.+. .+++..+..+
T Consensus 51 --------~~~d~-G~h~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~-~g~~~~~p~~~~~~l~--~~~~~~~~~~ 117 (479)
T PRK07208 51 --------NRFDI-GGHRFFSKSPEVMDLWNEILPDDDFLLRPR-LSRIYY-RGKFFDYPLKAFDALK--NLGLWRTAKC 117 (479)
T ss_pred --------ceEcc-CCceeccCCHHHHHHHHHhcCCCccccccc-cceEEE-CCEEecCCcchhHHHH--hCCHhHHHHH
Confidence 34566 577776554 56677777765222222211 223333 6788888876433332 2343333222
Q ss_pred HHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHH-HHH-HHHhcccCCchhhhhhhcchhHHHHH--
Q 009247 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IVL-YAIAMADYDQEVSEYVLKTRDGINRL-- 254 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~-~~~-~~i~l~~~~~~~~~~~~s~~~~l~~~-- 254 (539)
+. ..+.... . ....+.++.+|+++. +.+.+.+ ++. +...+. ..++ +++|+.+++.++
T Consensus 118 ~~--~~~~~~~---~---------~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~--~~~~--~~~s~~~~~~~~~~ 178 (479)
T PRK07208 118 GA--SYLKARL---R---------PRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVW--GVPC--DEISADWAAQRIKG 178 (479)
T ss_pred HH--HHHHHhc---C---------CCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhh--CCCh--HHCCChHHhCcccC
Confidence 11 1111110 0 012468999999863 2333333 332 222222 2222 345665433222
Q ss_pred -------HHHHHhh-c-------cccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe
Q 009247 255 -------ALYNSSI-G-------RFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL 319 (539)
Q Consensus 255 -------~~~~~s~-g-------~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l 319 (539)
...+... + ..+.....+.||++|++.|+++|.+.++..|++|++|++|++|..+. ++.+++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~ 257 (479)
T PRK07208 179 LSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVV 257 (479)
T ss_pred CCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEE
Confidence 1122111 0 00100123779999999999999999999999999999999998862 333444443
Q ss_pred --CCCc--EEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCCCCCC
Q 009247 320 --ASGQ--DILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPRSLFP 394 (539)
Q Consensus 320 --~~G~--~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~~~~~ 394 (539)
.+|+ ++.||+||++ |...+.+++.+ +++..............+..+.+.++++... +. ..+.+|+....
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~---~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~-~~-~~~~~~~~~~~- 331 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLRELVAALDP---PPPPEVRAAAAGLRYRDFITVGLLVKELNLF-PD-NWIYIHDPDVK- 331 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHHHHhcCC---CCCHHHHHHHhCCCcceeEEEEEEecCCCCC-CC-ceEEecCCCCc-
Confidence 2454 5899999975 43322333221 1222222211222334455555556765321 11 23334432211
Q ss_pred CCCCcEEEEEeCC-CCccCCCCc-EEEEEEEeecC-----ccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCc
Q 009247 395 EQVTSIRVLQLGG-NLAVCPLGM-FVLYFSALCDE-----VNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKP 467 (539)
Q Consensus 395 ~~~~~v~v~~~~~-~~~~cP~G~-~vi~~st~~~~-----~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (539)
.-.+..++. ++..+|+|+ ..+.+...+.. ....+++++.+++.|..+.. . ...++
T Consensus 332 ----~~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~~~~~~~L~~l~~-~-------------~~~~~ 393 (479)
T PRK07208 332 ----VGRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLIALAIQELARLGL-I-------------RPADV 393 (479)
T ss_pred ----cceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHHHHHHHHHHHcCC-C-------------Chhhe
Confidence 011222222 356789997 34433332211 12356788888888877421 0 01122
Q ss_pred eEEE--EEeeE--eec-------C-----CCCCCcEEEcCCCC--CCCChHHHHHHHHHHHHHhCCCC
Q 009247 468 TLLW--SALYI--QDL-------S-----LGQFGSIISTPTPD--GNLNYNDLLDATEKLYRKLYPNE 517 (539)
Q Consensus 468 ~~l~--~~~~~--~~~-------~-----~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~ 517 (539)
...| ...+. |.. . ....+||++++-.. ...+-|+++.++.++.++|....
T Consensus 394 ~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 394 EDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYNNQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred eEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeeccccccccCChhHHHHHHHHHHHHHhcCC
Confidence 1111 11111 111 0 12347899988422 23577789999999999986653
No 18
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.91 E-value=2.4e-21 Score=206.80 Aligned_cols=268 Identities=17% Similarity=0.179 Sum_probs=171.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~------------------------------------ 44 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG------------------------------------ 44 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC------------------------------------
Confidence 58999999999999999999999999999999999999986421
Q ss_pred CCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceeccceeeEccCCcee--------ecC-CCHHHhhhccCCChH
Q 009247 104 HPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATFMLDADAKLC--------SVP-DSRAAIFKDKSLGLM 173 (539)
Q Consensus 104 ~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~--------~vp-~s~~~~f~~~~ls~~ 173 (539)
.+|.+|. |+++++... .+.+++.+.|+...+.+......|.. .++++. ..| .....+++.+.+++.
T Consensus 45 --~g~~~d~-G~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~ 120 (474)
T TIGR02732 45 --DGNHIEM-GLHVFFGCYANLFRLMKKVGAEDNLLLKEHTHTFVN-KGGDIGELDFRFATGAPFNGLKAFFTTSQLKWV 120 (474)
T ss_pred --CCceEee-ceEEecCchHHHHHHHHHcCCccccccccceeEEEc-CCCcccccccCCCCCCchhhhHHHhcCCCCCHH
Confidence 2345666 688876543 56777888888765544432222322 133321 123 223456777888998
Q ss_pred HHHHHHHHHHH---HhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhH
Q 009247 174 EKNQLMRFFKL---VQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDG 250 (539)
Q Consensus 174 ~k~~l~kfl~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~ 250 (539)
+|.++.+.+.. ..... ... .....+....+.|+.+|+++++.++.+.+.++..++...+..++ +++|+..+
T Consensus 121 dklr~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~--~~~Sa~~~ 194 (474)
T TIGR02732 121 DKLRNALALGTSPIVRGLV-DYD---GAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDC--ENISARCM 194 (474)
T ss_pred HHHHHHHHhhhhHHHhhcc-ccc---hhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCH--HHHHHHHH
Confidence 98876553321 11110 000 00011223456999999999998887554444333222222222 34677666
Q ss_pred HHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--cEEEEEeCCC---c
Q 009247 251 INRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRLASG---Q 323 (539)
Q Consensus 251 l~~~~~~~~s~g~~g~~~~~~~~p~gG~ge-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l~~G---~ 323 (539)
+..++.+. .++++. -+.++++|.++ +.+.+.+.++..||+|+++++|++|..+.. ++ ++++|++.+| +
T Consensus 195 ~~~~~~~~--~~~~~s---~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~ 269 (474)
T TIGR02732 195 LTIFMLFA--AKTEAS---KLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKK 269 (474)
T ss_pred HHHHHHHH--hCCCcc---eeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcce
Confidence 65555332 233331 26789999876 778899999999999999999999987521 12 3677777554 5
Q ss_pred EEEcCEEEEC-CCCCCCCCC
Q 009247 324 DILSHKLVLD-PSFTVPGSL 342 (539)
Q Consensus 324 ~i~a~~VI~~-p~~~~~~l~ 342 (539)
++.||+||++ |.+....|+
T Consensus 270 ~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 270 VIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred EEECCEEEECCChHHHHhhC
Confidence 6899999974 544445554
No 19
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.91 E-value=1.9e-21 Score=201.05 Aligned_cols=400 Identities=16% Similarity=0.164 Sum_probs=244.6
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
.|+|||||++||+||+.|+++| .+|+|||+.++.||..+|+..+|
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G--------------------------------- 48 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG--------------------------------- 48 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC---------------------------------
Confidence 5899999999999999999999 99999999999999999986543
Q ss_pred ccCCCceEEecCCCeEEecC-hHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHHHH
Q 009247 102 SQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQLMR 180 (539)
Q Consensus 102 ~~~~~~~~~dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l~k 180 (539)
|.+|. ||+.++.+ ..+++++.+.|.++.+.+..-...|+|. +|+++++|... ++.-+.+....+..+.+
T Consensus 49 ------~~~e~-G~~~f~~~~~~~l~li~eLGled~l~~~~~~~~~i~~-~gkl~p~P~~~--i~~ip~~~~~~~~~~~~ 118 (444)
T COG1232 49 ------FLFER-GPHHFLARKEEILDLIKELGLEDKLLWNSTARKYIYY-DGKLHPIPTPT--ILGIPLLLLSSEAGLAR 118 (444)
T ss_pred ------EEEee-chhheecchHHHHHHHHHhCcHHhhccCCcccceEee-CCcEEECCccc--eeecCCccccchhHHHH
Confidence 45666 57766555 6789999999999888877666667765 89999999874 44333322212223333
Q ss_pred HHHHHhcccccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHH---
Q 009247 181 FFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLAL--- 256 (539)
Q Consensus 181 fl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~--- 256 (539)
++...... + .+....+.++.+|+++ |+ +++.+.++-.+.-.-|..+. +.+|+..+...+.+
T Consensus 119 ~~~~~~~~----~-------~~~~~~d~sv~~f~r~~fG--~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~ 183 (444)
T COG1232 119 ALQEFIRP----K-------SWEPKQDISVGEFIRRRFG--EEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAER 183 (444)
T ss_pred HHHhhhcc----c-------CCCCCCCcCHHHHHHHHHh--HHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhh
Confidence 33222111 0 0234567899999986 43 33333222111111122221 33555522221111
Q ss_pred -HHHhh-c--cccC-----CCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEc
Q 009247 257 -YNSSI-G--RFQN-----ALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILS 327 (539)
Q Consensus 257 -~~~s~-g--~~g~-----~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a 327 (539)
|...+ | +-+. ..+.|.++++|+++|++++.+.+... ++++++|+.|..+ ... .++.+.+|+.+.|
T Consensus 184 ~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~--~~~-~~~~~~~g~~~~~ 257 (444)
T COG1232 184 KYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK--GAG-KTIVDVGGEKITA 257 (444)
T ss_pred hhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhhhc---eeecceeeEEEEc--CCc-cEEEEcCCceEEc
Confidence 11110 0 0000 01247788999999999999877665 9999999999875 222 3455678999999
Q ss_pred CEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCC-CCCCCCceEEEeCCCCCCCCCCCcEEEEEe
Q 009247 328 HKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSS-LKPDLSNFLVIFPPRSLFPEQVTSIRVLQL 405 (539)
Q Consensus 328 ~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~-l~~~~~~~~~~~p~~~~~~~~~~~v~v~~~ 405 (539)
|.||++ |.+.+..++.+ ..... .+.+. ....++.+++.++.+ ....++...+.+|.... . +.....
T Consensus 258 D~VI~t~p~~~l~~ll~~--~~~~~---~~~~~-~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~-----~-~~a~~~ 325 (444)
T COG1232 258 DGVISTAPLPELARLLGD--EAVSK---AAKEL-QYTSVVTVVVGLDEKDNPALPDGYGLLIADDDP-----Y-ILAITF 325 (444)
T ss_pred ceEEEcCCHHHHHHHcCC--cchhh---hhhhc-cccceEEEEEEeccccccCCCCceEEEEecCCC-----c-ceeEEE
Confidence 999974 55544555422 11111 11111 233466666667764 33344566667764321 1 222222
Q ss_pred CC--CCccCCCCcEEEEEEEeecCcc-----chHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCc--eEEEEEeeE
Q 009247 406 GG--NLAVCPLGMFVLYFSALCDEVN-----QGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKP--TLLWSALYI 476 (539)
Q Consensus 406 ~~--~~~~cP~G~~vi~~st~~~~~~-----~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 476 (539)
++ .+...|+|+.++++........ ..++.++.+++.|...... ..+| ..+++..+.
T Consensus 326 ~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~---------------~~~~~~~~v~r~~~~ 390 (444)
T COG1232 326 HSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGI---------------NGDPVFVEVTRWKYA 390 (444)
T ss_pred ecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCc---------------Ccchhheeeeecccc
Confidence 22 2577899999999987654321 2467778787777765321 1122 223333333
Q ss_pred eecC------------CCCC---CcEEEcCCCCCCCChHHHHHHHHHHHHHhC
Q 009247 477 QDLS------------LGQF---GSIISTPTPDGNLNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 477 ~~~~------------~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (539)
++.. .... ++|.+.+..-...+..++|.+++++.+++.
T Consensus 391 ~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g~g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 391 MPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEGVGLPDCIAAGKEAAEQLL 443 (444)
T ss_pred CCccchhHHHHHHHHHHhhccccCCeEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 3221 1112 788888887777899999999998877663
No 20
>PLN02487 zeta-carotene desaturase
Probab=99.89 E-value=7.9e-20 Score=196.85 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=172.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...+|+|||+|++||++|..|+++|++|+|+|+++++||+++++...
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~--------------------------------- 120 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK--------------------------------- 120 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec---------------------------------
Confidence 44699999999999999999999999999999999999999987421
Q ss_pred cccCCCceEEecCCCeEEecC-hHHHHHHHhcCccccccceeccceeeEccCCcee----ecC--CC---HHHhhhccCC
Q 009247 101 LSQHPRNFNLDVSGPRVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC----SVP--DS---RAAIFKDKSL 170 (539)
Q Consensus 101 ~~~~~~~~~~dl~Gp~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~----~vp--~s---~~~~f~~~~l 170 (539)
..+.+|. |+++++.. ..+.++|.+.|+...+.+......|.. .+|.+. .+| .. ...+++...+
T Consensus 121 -----~g~~~e~-G~h~~~~~~~~~~~ll~~LGl~~~~~~~~~~~~~~~-~~g~~~~~~~~~p~~~pl~~~~~~l~~~~L 193 (569)
T PLN02487 121 -----NGNHIEM-GLHVFFGCYNNLFRLMKKVGADENLLVKDHTHTFVN-KGGDVGELDFRFPVGAPLHGIKAFLTTNQL 193 (569)
T ss_pred -----CCcEEec-ceeEecCCcHHHHHHHHhcCCcccccccccceeEEe-cCCEEeeeccCCCCCchhhhHHHHHcCCCC
Confidence 1244555 57776543 367888888998766655432222322 244431 122 21 1245566778
Q ss_pred ChHHHHHHHHHH--H-HHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcc
Q 009247 171 GLMEKNQLMRFF--K-LVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKT 247 (539)
Q Consensus 171 s~~~k~~l~kfl--~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~ 247 (539)
++.+|.++..-+ . .+..... .. .....+....+.++.+|+++++.++.+.+.++..+++..+..++ +++|+
T Consensus 194 s~~dklr~~~~l~~~~~~~al~~--~~--~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~--d~~SA 267 (569)
T PLN02487 194 EPYDKARNALALATSPVVRALVD--PD--GAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDC--DNISA 267 (569)
T ss_pred CHHHHHhhcccccccchhhhccC--cc--ccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCH--HHHHH
Confidence 888877653221 1 0111000 00 00011233456999999999888875544444333332222232 45677
Q ss_pred hhHHHHHHHHHHhhccccCCCcceEeecCCcch-HHHHHHHHHHHcCcEEEeCCceeEEEEecC-CC--cEEEEEe---C
Q 009247 248 RDGINRLALYNSSIGRFQNALGALIYPIYGQGE-LPQAFCRRAAVKGCLYVLRMPVISLLTDQN-SG--SYKGVRL---A 320 (539)
Q Consensus 248 ~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~ge-L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-~g--~~~gV~l---~ 320 (539)
..++..+..+. .+. . .+-++||+||.++ |++.+++.++..||+|+++++|++|..+.+ ++ ++++|++ .
T Consensus 268 ~~~~~vl~~~~--~~~-~--~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~ 342 (569)
T PLN02487 268 RCMLTIFSLFA--TKT-E--ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT 342 (569)
T ss_pred HHHHHHHHHHh--hcC-C--cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC
Confidence 66665553221 111 1 1226799999985 999999999999999999999999998731 22 3788888 3
Q ss_pred CCcEEEcCEEEEC-CCCCCCCCC
Q 009247 321 SGQDILSHKLVLD-PSFTVPGSL 342 (539)
Q Consensus 321 ~G~~i~a~~VI~~-p~~~~~~l~ 342 (539)
+++.+.||.||++ |.+.+.+|+
T Consensus 343 ~~~~~~aD~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 343 EKEIVKADAYVAACDVPGIKRLL 365 (569)
T ss_pred CceEEECCEEEECCCHHHHHHhC
Confidence 4557899999974 444445554
No 21
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.84 E-value=4.6e-18 Score=179.34 Aligned_cols=276 Identities=16% Similarity=0.160 Sum_probs=167.2
Q ss_pred HHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccccCCCceEEecCCC
Q 009247 36 VISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQHPRNFNLDVSGP 115 (539)
Q Consensus 36 ~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~Gp 115 (539)
+||.+|+++|++|+|||+++++||+++|++.+++ .+.+|+ |+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~-------------------------------------~~~~d~-G~ 42 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGL-------------------------------------GQTIDN-GQ 42 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCC-------------------------------------Ccceec-CC
Confidence 4899999999999999999999999999876431 123566 57
Q ss_pred eEEecC-hHHHHHHHhcCccccccceeccceeeEccCCce-------eecCCC-HHHhhhccCCChHHHHHHHHHHHHHh
Q 009247 116 RVLFCA-DHAVDLMLKSGASHYLEFKSIDATFMLDADAKL-------CSVPDS-RAAIFKDKSLGLMEKNQLMRFFKLVQ 186 (539)
Q Consensus 116 ~ll~~~-~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~-------~~vp~s-~~~~f~~~~ls~~~k~~l~kfl~~~~ 186 (539)
++++.. ..+.+++.+.|+..+..+.. ....++..++.. .+.|.. ...+.+...+++.++..+.+++..+.
T Consensus 43 ~~~~~~~~~~~~l~~~lgl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 121 (419)
T TIGR03467 43 HVLLGAYTNLLALLRRIGAEPRLQGPR-LPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALR 121 (419)
T ss_pred EEEEcccHHHHHHHHHhCCchhhhccc-CCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 777654 36778888888877655421 121222212221 111221 12233456678888887777665433
Q ss_pred cccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHHHhhccccC
Q 009247 187 GHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQN 266 (539)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~ 266 (539)
... ...+.+.|+.+|+++++.++.+.+.+...+....+..++ +++|+...+..+.. .+.....
T Consensus 122 ~~~------------~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~s~~~~~~~~~~---~~~~~~~ 184 (419)
T TIGR03467 122 RTR------------FRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPP--ERASAALAAKVLRD---SFLAGRA 184 (419)
T ss_pred hcC------------ccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHH---HHhcCCC
Confidence 211 123457899999999888877776544322222122222 34555544433322 1211111
Q ss_pred CCcceEeecCCcchHH-HHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCcc
Q 009247 267 ALGALIYPIYGQGELP-QAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLAS 344 (539)
Q Consensus 267 ~~~~~~~p~gG~geL~-qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l~~~ 344 (539)
...+.||++|++++. ++|.+.++..|++|++|++|++|..+ ++++..+...+|+++.||+||++ |...+..++ +
T Consensus 185 -~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~--~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll-~ 260 (419)
T TIGR03467 185 -ASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN--AGGIRALVLSGGETLPADAVVLAVPPRHAASLL-P 260 (419)
T ss_pred -cceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc--CCcceEEEecCCccccCCEEEEcCCHHHHHHhC-C
Confidence 112789999988766 55888888889999999999999886 45443222357888999999974 444434543 2
Q ss_pred chhhhhhhhhhhccCCCCceEEEEEEEecCCC
Q 009247 345 SHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (539)
Q Consensus 345 ~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l 376 (539)
++...+ .+. ...+..+.+..+.+++++
T Consensus 261 -~~~~~~---~l~-~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 261 -GEDLGA---LLT-ALGYSPITTVHLRLDRAV 287 (419)
T ss_pred -CchHHH---HHh-hcCCcceEEEEEEeCCCc
Confidence 111221 222 123455666677788887
No 22
>PLN02268 probable polyamine oxidase
Probab=99.84 E-value=2.8e-18 Score=182.14 Aligned_cols=275 Identities=13% Similarity=0.126 Sum_probs=154.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLS 102 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (539)
.+|||||||++||+||..|.++|++|+|||+++++||+++|....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~----------------------------------- 45 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF----------------------------------- 45 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC-----------------------------------
Confidence 379999999999999999999999999999999999999985432
Q ss_pred cCCCceEEecCCCeEEec---ChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHH-
Q 009247 103 QHPRNFNLDVSGPRVLFC---ADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL- 178 (539)
Q Consensus 103 ~~~~~~~~dl~Gp~ll~~---~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l- 178 (539)
++.+|+ |+++++. ..++.+++.+.|+..+-.. .+..+++..+...+.+... . ...++......+
T Consensus 46 ----g~~~d~-G~~~i~~~~~~~~~~~l~~~lgl~~~~~~--~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~ 113 (435)
T PLN02268 46 ----GFPVDM-GASWLHGVCNENPLAPLIGRLGLPLYRTS--GDNSVLYDHDLESYALFDM--D---GNQVPQELVTKVG 113 (435)
T ss_pred ----CcccCC-CCeeEeccCCCchHHHHHHHhCCceEecc--CCccccccccccccceecC--C---CCCCCHHHHHHHH
Confidence 234566 6888753 2357788888887543210 1111112100000000000 0 001111111122
Q ss_pred ---HHHHHHHhcccccCccccccccccccccCCcHHHHHHhcC-CC------hhHHHHHHHHHh-c-ccCCchhhhhhhc
Q 009247 179 ---MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK-LP------HKIKSIVLYAIA-M-ADYDQEVSEYVLK 246 (539)
Q Consensus 179 ---~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-l~------~~l~~~~~~~i~-l-~~~~~~~~~~~~s 246 (539)
.+++..+.... .....+.|+.+|++++. .. ...++++.+.+. + ..+..++ .++|
T Consensus 114 ~~~~~~~~~~~~~~------------~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ls 179 (435)
T PLN02268 114 ETFERILEETEKVR------------DEHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRMEGWFAADA--DTIS 179 (435)
T ss_pred HHHHHHHHHHHHHH------------hccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHHHHhCCCh--HhCc
Confidence 22222221110 01245678899876532 11 122333221110 0 0012221 2233
Q ss_pred chhHHHHHHHHHHhhcc-ccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEE
Q 009247 247 TRDGINRLALYNSSIGR-FQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDI 325 (539)
Q Consensus 247 ~~~~l~~~~~~~~s~g~-~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i 325 (539)
+.. +.. ... .|. ..+..+|++.|+++|++ |..|++|++|++|... ++. +.|++.+|+++
T Consensus 180 ~~~-------~~~-~~~~~g~----~~~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~--~~~-v~v~~~~g~~~ 239 (435)
T PLN02268 180 LKS-------WDQ-EELLEGG----HGLMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR--YNG-VKVTVEDGTTF 239 (435)
T ss_pred hhh-------cCC-ccccCCC----ceeecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc--CCc-EEEEECCCcEE
Confidence 321 000 000 121 24677899999998754 5579999999999876 344 45777889899
Q ss_pred EcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCC
Q 009247 326 LSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 326 ~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (539)
.||+||+. |...+......+.|++|+.+....+...++.+.|.++.+++++-+
T Consensus 240 ~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~ 293 (435)
T PLN02268 240 VADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWP 293 (435)
T ss_pred EcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCC
Confidence 99999964 544433322345567776655544445577888988889998644
No 23
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.82 E-value=6.2e-20 Score=182.82 Aligned_cols=71 Identities=32% Similarity=0.379 Sum_probs=63.2
Q ss_pred ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC--CCCCCCC
Q 009247 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS--FTVPGSL 342 (539)
Q Consensus 270 ~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~--~~~~~l~ 342 (539)
.+.||+||||+++.++++.+..+|++|.+++.|++|..+ +|+++||+++||++++++.||+|.+ .++.+|+
T Consensus 255 ~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLl 327 (561)
T KOG4254|consen 255 GWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--SGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLL 327 (561)
T ss_pred cccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--CCeEEEEEecCCcEEEeeeeecCCchHHHHHHhC
Confidence 378999999999999999999999999999999999998 7999999999999999999998644 3444554
No 24
>PLN02676 polyamine oxidase
Probab=99.81 E-value=4.4e-17 Score=174.26 Aligned_cols=285 Identities=11% Similarity=0.074 Sum_probs=158.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYAS 98 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (539)
...+||||||+|++||+||..|+++|. +|+|||+++++||++.+.+..+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g------------------------------ 73 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG------------------------------ 73 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC------------------------------
Confidence 346899999999999999999999998 6999999999999999865432
Q ss_pred cccccCCCceEEecCCCeEEec-----ChHHHHHHHhcCccccc-cceeccceeeEccCCceeecCCCHHHhhhccCCCh
Q 009247 99 RLLSQHPRNFNLDVSGPRVLFC-----ADHAVDLMLKSGASHYL-EFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGL 172 (539)
Q Consensus 99 ~~~~~~~~~~~~dl~Gp~ll~~-----~~~l~~~l~~~~~~~y~-ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~ 172 (539)
+.+|+ |++++.. ...+.+++.+.|+..+. .+... ...++..+|+.+ +. +...
T Consensus 74 ---------~~~d~-g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~g~~~--~~---~~~~------ 131 (487)
T PLN02676 74 ---------VSVEL-GANWVEGVGGPESNPIWELANKLKLRTFYSDFDNL-SSNIYKQDGGLY--PK---KVVQ------ 131 (487)
T ss_pred ---------eEEec-CCEEEEcccCcccChHHHHHHhcCCceeecCcccc-ceeEECCCCCCC--CH---HHHH------
Confidence 34555 4666632 34667777777776442 12211 222333344433 11 1100
Q ss_pred HHHHHHHHHHHHHhcccccCccccccccccccccCCcH--HHHHHhcC-CChhHHHHHHHHHhcccCCchhhhhhhcchh
Q 009247 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPF--AEFLTKMK-LPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (539)
Q Consensus 173 ~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~l~~~~-l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~ 249 (539)
.-...+.++.+++..+..... ..++.+.++ .+++.+.. ....... ..+......+..++ ..+|...
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~S~~~ 200 (487)
T PLN02676 132 KSMKVADASDEFGENLSISLS--------AKKAVDISILTAQRLFGQVPKTPLEMV-IDYYNYDYEFAEPP--RVTSLKN 200 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhhc--------ccCCCCccHHHHHHHHhhCCCCHHHHH-HHHHhccceeccCc--cccchhh
Confidence 000111112221111110000 012334555 33344322 2221111 11111100011111 1122222
Q ss_pred HHHHHHHHHHhhccccCCCcceEee-cCCcchHHHHHHHHHHH------cCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 009247 250 GINRLALYNSSIGRFQNALGALIYP-IYGQGELPQAFCRRAAV------KGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (539)
Q Consensus 250 ~l~~~~~~~~s~g~~g~~~~~~~~p-~gG~geL~qal~r~~a~------~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (539)
.+. ...+..+|. ..+... ++|++.|+++|++.... .+..|+||++|++|..+ ++. +.|++.+|
T Consensus 201 ~~~-----~~~~~~~g~--~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~--~~g-V~V~~~~G 270 (487)
T PLN02676 201 TEP-----NPTFVDFGE--DEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS--KNG-VTVKTEDG 270 (487)
T ss_pred cCc-----ccccccCCC--ceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc--CCc-EEEEECCC
Confidence 100 001111221 112222 68999999998875422 23679999999999876 344 46888899
Q ss_pred cEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCC
Q 009247 323 QDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 323 ~~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (539)
++++||+||+. |...+.+..+.+.|+||..+....+...++.+.|.++.+++||=
T Consensus 271 ~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW 326 (487)
T PLN02676 271 SVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFW 326 (487)
T ss_pred CEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCC
Confidence 99999999974 54443432246788898877665555567889999999999864
No 25
>PLN02529 lysine-specific histone demethylase 1
Probab=99.80 E-value=9.4e-17 Score=176.56 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=162.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...||+|||+|++||+||..|+++|++|+|||+++++||++.|..+.+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~-------------------------------- 206 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR-------------------------------- 206 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC--------------------------------
Confidence 467999999999999999999999999999999999999999876421
Q ss_pred cccCCCceEEecCCCeEEecCh--HHHHHHHhcCccccccceeccce-eeEccCCceeecCCCHHHhhhccCCChHHHHH
Q 009247 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDAT-FMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQ 177 (539)
Q Consensus 101 ~~~~~~~~~~dl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~-~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~ 177 (539)
....+.+|+ |+++++... ++..+..+.++.-+ .+... .++..+|........ . . .+ ..
T Consensus 207 ---~g~~~~~Dl-Gaswi~g~~~npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~-----~---~~-~~ 267 (738)
T PLN02529 207 ---KGQFAAVDL-GGSVITGIHANPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--S-----N---IE-FI 267 (738)
T ss_pred ---CCCceEEec-CCeeccccccchHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--h-----h---HH-HH
Confidence 001245777 688885432 45555556665322 11111 133335543211100 0 0 00 01
Q ss_pred HHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcC------CChhHHHHHHHHHhcccCCchhhhhhhcchhHH
Q 009247 178 LMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMK------LPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGI 251 (539)
Q Consensus 178 l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l 251 (539)
+.+++..+..+..... ..+.+.|+.+|++++. +++..+.++.+.++...+....+ ++.
T Consensus 268 ~~~~l~~~~~l~~~~~---------~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~---~s~---- 331 (738)
T PLN02529 268 FNKLLDKVTELRQIMG---------GFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGC---LSD---- 331 (738)
T ss_pred HHHHHHHHHHHHHhcc---------cCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCC---hHH----
Confidence 1222222221110000 1245688999997543 55555555443222111111100 111
Q ss_pred HHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009247 252 NRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (539)
Q Consensus 252 ~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI 331 (539)
..+..+....+ +.. .|...+..||++.|+++|++ +..|+||++|++|..+ ++. +.|+ .++++++||+||
T Consensus 332 LSl~~~~~~~~-~e~-~G~~~~i~GG~~~Li~aLA~-----~L~IrLnt~V~~I~~~--~dG-VtV~-t~~~~~~AD~VI 400 (738)
T PLN02529 332 LSAAYWDQDDP-YEM-GGDHCFLAGGNWRLINALCE-----GVPIFYGKTVDTIKYG--NDG-VEVI-AGSQVFQADMVL 400 (738)
T ss_pred hhhhHhhhccc-ccc-CCceEEECCcHHHHHHHHHh-----cCCEEcCCceeEEEEc--CCe-EEEE-ECCEEEEcCEEE
Confidence 11122222111 111 12356789999999998875 3359999999999886 333 3465 356789999999
Q ss_pred EC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCC
Q 009247 332 LD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 332 ~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (539)
+. |...+.+..+.+.|++|+.+....+...++.+.+.++.+++++=
T Consensus 401 VTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW 447 (738)
T PLN02529 401 CTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFW 447 (738)
T ss_pred ECCCHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccc
Confidence 75 44333322235677888766655556677889999999999853
No 26
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.75 E-value=9.5e-16 Score=169.39 Aligned_cols=279 Identities=13% Similarity=0.109 Sum_probs=159.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...+|||||||++||+||+.|++.|++|+|+|+++++||+..++.+.+.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~------------------------------- 285 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGD------------------------------- 285 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCC-------------------------------
Confidence 4579999999999999999999999999999999999999999876531
Q ss_pred cccCCCceEEecCCCeEEecC--hHHHHHHHhcCccccccceecccee-eEccCCceee--cCCCHHHhhhccCCChHHH
Q 009247 101 LSQHPRNFNLDVSGPRVLFCA--DHAVDLMLKSGASHYLEFKSIDATF-MLDADAKLCS--VPDSRAAIFKDKSLGLMEK 175 (539)
Q Consensus 101 ~~~~~~~~~~dl~Gp~ll~~~--~~l~~~l~~~~~~~y~ef~~~~~~~-~~~~~g~~~~--vp~s~~~~f~~~~ls~~~k 175 (539)
.-.+.+|+ |++++... ..+..++...|+..+ .+...+ ++..+|+.+. ++... +
T Consensus 286 ----~~~~~~d~-Gas~i~g~~~npl~~l~~~lgl~~~----~~~~~~~~~~~dG~~~~~~~~~~v------------~- 343 (808)
T PLN02328 286 ----GVVAAADL-GGSVLTGINGNPLGVLARQLGLPLH----KVRDICPLYLPDGKAVDAEIDSKI------------E- 343 (808)
T ss_pred ----CcceeccC-CceeecCCCccHHHHHHHHcCCceE----ecCCCceEEeCCCcCcchhhhhhH------------H-
Confidence 01234566 57777443 246666667776432 111111 2223554331 11110 1
Q ss_pred HHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhc------CCChhHHHHHHHHHhcccCCchhhhhhhcchh
Q 009247 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKM------KLPHKIKSIVLYAIAMADYDQEVSEYVLKTRD 249 (539)
Q Consensus 176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~------~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~ 249 (539)
..+.+++..+.++...... .....+.++.+|++++ ..++..+.++.+.++...+... +...
T Consensus 344 ~~f~~lL~~~~klr~~~~~-------~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanlE~~~g------s~ls 410 (808)
T PLN02328 344 ASFNKLLDRVCKLRQAMIE-------EVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANLEYANA------SLMS 410 (808)
T ss_pred HHHHHHHHHHHHHHHhhhh-------cccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHhccch------hhHH
Confidence 1222333322211100000 0112457888888743 2344444433222221111110 0001
Q ss_pred HHHHHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCE
Q 009247 250 GINRLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHK 329 (539)
Q Consensus 250 ~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~ 329 (539)
.+ .+..+.... .+ ...+.+.+..||++.|+++|++.. + |+||++|++|..+ ++.+ .| +.+|++++||+
T Consensus 411 ~L-Sl~~w~qd~-~~-e~~G~~~~v~GG~~~Li~aLa~~L---~--I~ln~~V~~I~~~--~dgV-~V-~~~G~~~~AD~ 478 (808)
T PLN02328 411 NL-SMAYWDQDD-PY-EMGGDHCFIPGGNDTFVRELAKDL---P--IFYERTVESIRYG--VDGV-IV-YAGGQEFHGDM 478 (808)
T ss_pred HH-Hhhhhhccc-cc-cCCCeEEEECCcHHHHHHHHHhhC---C--cccCCeeEEEEEc--CCeE-EE-EeCCeEEEcCE
Confidence 11 111111100 11 111235677899999999997643 3 9999999999886 3333 34 45788999999
Q ss_pred EEEC-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCC
Q 009247 330 LVLD-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 330 VI~~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (539)
||+. |...+....+.+.|++|..+....+...++.+.|.++.+++++=
T Consensus 479 VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW 527 (808)
T PLN02328 479 VLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFW 527 (808)
T ss_pred EEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 9975 44443422234667788766655455567889999999999863
No 27
>PLN02568 polyamine oxidase
Probab=99.75 E-value=1.4e-16 Score=171.74 Aligned_cols=103 Identities=11% Similarity=-0.002 Sum_probs=76.9
Q ss_pred cceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCC----c
Q 009247 269 GALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSL----A 343 (539)
Q Consensus 269 ~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l~----~ 343 (539)
|.+++..+|++.|+++|++.+ .++.|+||++|++|..+ ++. +.|++++|+++.||+||+. |...+.+-. +
T Consensus 232 g~~~~i~gG~~~Li~~La~~L--~~~~I~ln~~V~~I~~~--~~~-v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i 306 (539)
T PLN02568 232 GEEITIAKGYLSVIEALASVL--PPGTIQLGRKVTRIEWQ--DEP-VKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSG 306 (539)
T ss_pred CCeEEECCcHHHHHHHHHhhC--CCCEEEeCCeEEEEEEe--CCe-EEEEEcCCCEEEcCEEEEcCCHHHHhhccccccc
Confidence 346678999999999997754 35689999999999876 343 4577889999999999974 443333210 2
Q ss_pred cchhhhhhhhhhhccCCCCceEEEEEEEecCCC
Q 009247 344 SSHQQLQESFQAFSLSDNKGKVARGICITRSSL 376 (539)
Q Consensus 344 ~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l 376 (539)
.++|+||+.+....+...++.+.|.++.+++++
T Consensus 307 ~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 307 LFSPPLPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred eecCCCCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 467888887665555556788999999999985
No 28
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.74 E-value=3.7e-16 Score=158.28 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=122.7
Q ss_pred eEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCccchhhh
Q 009247 271 LIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQL 349 (539)
Q Consensus 271 ~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l~~~~~~~l 349 (539)
.+.+.|||+.|+++|++ ..|..|.++++|.+|.++ ++. +.|++.+.++..+|.+||. |..++.. +.++|.+
T Consensus 201 ~~~~~GGmd~la~Afa~---ql~~~I~~~~~V~rI~q~--~~g-V~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l 272 (450)
T COG1231 201 MLQRLGGMDQLAEAFAK---QLGTRILLNEPVRRIDQD--GDG-VTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLL 272 (450)
T ss_pred hhccCccHHHHHHHHHH---HhhceEEecCceeeEEEc--CCe-EEEEeCCcceEEecEEEEecCHHHHhh--cccCCCC
Confidence 44677999999999864 678999999999999886 333 5677666578999999985 4333333 3466666
Q ss_pred hhhhhhhccCCCCceEEEEEEEecCCCCCCCC-ceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCCcEEEEEEEe-ec-
Q 009247 350 QESFQAFSLSDNKGKVARGICITRSSLKPDLS-NFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSAL-CD- 426 (539)
Q Consensus 350 ~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~-~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G~~vi~~st~-~~- 426 (539)
+..+++......++...|..+-+++||=.+.+ ..-..+- +..+..+...+. .--.|.-|+.-+.. .+
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~t--------D~~~~~i~~~s~--~~~~G~gVl~g~~~~g~~ 342 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLT--------DLGLGFISYPSA--PFADGPGVLLGSYAFGDD 342 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEee--------cCCcceEecCcc--ccCCCceEEEeeeecccc
Confidence 66666655556788888888889999743222 1111111 111111222221 11124445444322 11
Q ss_pred ----CccchHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCceEEEEEeeEeec---C--------CCCCCcEEEcC
Q 009247 427 ----EVNQGKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPTLLWSALYIQDL---S--------LGQFGSIISTP 491 (539)
Q Consensus 427 ----~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~--------~~~~~~i~~~~ 491 (539)
..-..++.++.++..|......+..+....-.+. ++ .+.-|+.-+.... + ....+.|+..+
T Consensus 343 A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~---~W-~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~Ag 418 (450)
T COG1231 343 ALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASV---DW-SKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAG 418 (450)
T ss_pred ceeEecCCHHHHHHHHHHhHhhhCChhhccccccceee---ec-ccCCcCCccccccCCcccccccccccCCCCceEEee
Confidence 1224567777777777765442211100000000 00 1122333322111 1 11236677777
Q ss_pred -C--CCCCCChHHHHHHHHHHHHHhC
Q 009247 492 -T--PDGNLNYNDLLDATEKLYRKLY 514 (539)
Q Consensus 492 -~--~~~~~~~~~~~~~~~~~~~~i~ 514 (539)
. +.-.=-+++||++++++..+|-
T Consensus 419 tEhas~~~Gw~eGAi~Sg~~AA~ei~ 444 (450)
T COG1231 419 TEHASEFGGWLEGAIRSGQRAAAEIH 444 (450)
T ss_pred ecccccccchhHHHHHHHHHHHHHHH
Confidence 2 2223346779999999998873
No 29
>PLN03000 amine oxidase
Probab=99.72 E-value=4.1e-15 Score=164.29 Aligned_cols=280 Identities=13% Similarity=0.093 Sum_probs=156.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccccccccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRL 100 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (539)
...+|||||+|++||.||..|++.|++|+|+|+++++||++.|..+.+.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~------------------------------- 231 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEAN------------------------------- 231 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCC-------------------------------
Confidence 4589999999999999999999999999999999999999999775421
Q ss_pred cccCCCceEEecCCCeEEecCh--HHHHHHHhcCccccccceeccceeeEccCCceeecCCCHHHhhhccCCChHHHHHH
Q 009247 101 LSQHPRNFNLDVSGPRVLFCAD--HAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRAAIFKDKSLGLMEKNQL 178 (539)
Q Consensus 101 ~~~~~~~~~~dl~Gp~ll~~~~--~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~~~f~~~~ls~~~k~~l 178 (539)
...+.+|+ |.+++.... .+..++.+.++.-+ .+..-.. +|..+|+.. |......+ ...+
T Consensus 232 ----~~~~~~Dl-Gas~i~g~~~npl~~L~~qlgl~l~-~~~~~~~--ly~~~Gk~v--~~~~~~~v---------e~~f 292 (881)
T PLN03000 232 ----RVGAAADL-GGSVLTGTLGNPLGIIARQLGSSLY-KVRDKCP--LYRVDGKPV--DPDVDLKV---------EVAF 292 (881)
T ss_pred ----CCceEeec-CCeEEeCCCccHHHHHHHHcCCcee-ecCCCCe--EEEeCCcCC--chhhhhhH---------HHHH
Confidence 12356788 578886543 35555667776532 2222112 222366543 22110000 0111
Q ss_pred HHHHHHHhcccccCccccccccccccccCCcHHHHHHh------cCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHH
Q 009247 179 MRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK------MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (539)
Q Consensus 179 ~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~------~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (539)
.+++..+..+..... ....+.++.++++. ..+.+..+.++...++...+... .....+.
T Consensus 293 n~lLd~~~~lr~l~~---------~~~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~a------s~ls~LS 357 (881)
T PLN03000 293 NQLLDKASKLRQLMG---------DVSMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLEYANA------GLVSKLS 357 (881)
T ss_pred HHHHHHHHHHHHHhc---------ccCcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccc------cCHHHHH
Confidence 122221111100000 00113444443321 12233223322211111111100 0000011
Q ss_pred HHHHHHHhhccccCCCcceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 253 RLALYNSSIGRFQNALGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 253 ~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
+..+-... .+.. .+......||++.|+++|++.+ .|+|+++|++|..+ ++. +.|++ +++++.||+||+
T Consensus 358 -l~~wdqd~-~~e~-~G~~~~v~GG~~~LieaLa~~L-----~I~Ln~~Vt~I~~~--~dg-V~V~~-~~~~~~AD~VIv 425 (881)
T PLN03000 358 -LAFWDQDD-PYDM-GGDHCFLPGGNGRLVQALAENV-----PILYEKTVQTIRYG--SNG-VKVIA-GNQVYEGDMVLC 425 (881)
T ss_pred -HHHhhhcc-cccC-CCceEEeCCCHHHHHHHHHhhC-----CcccCCcEEEEEEC--CCe-EEEEE-CCcEEEeceEEE
Confidence 11111101 1111 1225567899999999998644 29999999999876 333 34654 456899999997
Q ss_pred C-CCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCC
Q 009247 333 D-PSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLK 377 (539)
Q Consensus 333 ~-p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~ 377 (539)
. |...+..-.+.+.|+||+.+....+...++.+.|.++.+++++=
T Consensus 426 TVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW 471 (881)
T PLN03000 426 TVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFW 471 (881)
T ss_pred cCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccc
Confidence 4 54444422245778898877766566678889999999999864
No 30
>PLN02976 amine oxidase
Probab=99.67 E-value=5.2e-14 Score=159.61 Aligned_cols=104 Identities=11% Similarity=0.001 Sum_probs=75.8
Q ss_pred ceEeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecC-------CCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCC
Q 009247 270 ALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQN-------SGSYKGVRLASGQDILSHKLVLD-PSFTVPGS 341 (539)
Q Consensus 270 ~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-------~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l 341 (539)
..+..+||++.|+++|++.. .|+||++|++|..... ++.-+.|.+.+|+++.||+||+. |...+..-
T Consensus 927 ~~~rIkGGYqqLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag 1001 (1713)
T PLN02976 927 AHCMIKGGYSNVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAE 1001 (1713)
T ss_pred ceEEeCCCHHHHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhc
Confidence 35568999999999987643 3999999999987310 11224677889999999999975 43333321
Q ss_pred CccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCC
Q 009247 342 LASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 342 ~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (539)
.+.+.|+||+.+....+...++.+.|.++.++++|-+
T Consensus 1002 ~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~ 1038 (1713)
T PLN02976 1002 TIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWD 1038 (1713)
T ss_pred ccccCCcccHHHHHHHHhhccccceEEEEEeCCcccc
Confidence 1357889998776655566788899999999998643
No 31
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.67 E-value=7.2e-14 Score=139.39 Aligned_cols=245 Identities=18% Similarity=0.234 Sum_probs=149.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEE--eccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLH--LDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASR 99 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~Vlv--lE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (539)
..+|+|+|||++||++|++|+|.+-+|++ +|+.+|+||-.+|...+
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~-------------------------------- 58 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQ-------------------------------- 58 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCC--------------------------------
Confidence 36899999999999999999999987654 99999999999882111
Q ss_pred ccccCCCceEEecCCCeEEecCh----HHHHHHHhcCccccccceecc-----ceeeEccCCceeecCCCHHH-hhhccC
Q 009247 100 LLSQHPRNFNLDVSGPRVLFCAD----HAVDLMLKSGASHYLEFKSID-----ATFMLDADAKLCSVPDSRAA-IFKDKS 169 (539)
Q Consensus 100 ~~~~~~~~~~~dl~Gp~ll~~~~----~l~~~l~~~~~~~y~ef~~~~-----~~~~~~~~g~~~~vp~s~~~-~f~~~~ 169 (539)
+.|-++. ||.-+-..+ ...+++.++|+++-+.-...+ .+|++ +.|++..+|.+... +|. .
T Consensus 59 ------ng~ifE~-GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~-~~~~L~~vP~sl~~s~~~--~ 128 (491)
T KOG1276|consen 59 ------NGFIFEE-GPRTLRPAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLY-VPGKLPTVPSSLVGSLKF--S 128 (491)
T ss_pred ------Cceeecc-CCCccCcCCcchhHHHHHHHHcCccceeeecCCCChhhhheeec-cCcccccCCccccccccc--c
Confidence 2223333 455443333 367788888886443222111 13444 47899999987654 221 2
Q ss_pred CChHHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHh-cCCChhHHHHHHHHHhcccCCchhhhhhhcch
Q 009247 170 LGLMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTK-MKLPHKIKSIVLYAIAMADYDQEVSEYVLKTR 248 (539)
Q Consensus 170 ls~~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~-~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~ 248 (539)
+.+.-|..+..|+....+.. ......|.++.+|.+| || +++.+.+..+++-+.|..|+ .++|.+
T Consensus 129 l~p~~k~L~~a~l~e~fr~~-----------~~~~~~dESV~sF~~RrfG--~eV~d~~isp~i~GiyAgD~--~~LSmk 193 (491)
T KOG1276|consen 129 LQPFGKPLLEAFLRELFRKK-----------VSDPSADESVESFARRRFG--KEVADRLISPFIRGIYAGDP--SELSMK 193 (491)
T ss_pred cCcccchhHHHHHhhhcccc-----------CCCCCccccHHHHHHHhhh--HHHHHHHHHHHhCccccCCh--HHhhHH
Confidence 33445555555544321110 0123457899999986 66 55666555555555566554 456776
Q ss_pred hHHHHHHHHHHhhc---------cccC--------------C--CcceEeecCCcchHHHHHHHHHHHcCcEEEeCCcee
Q 009247 249 DGINRLALYNSSIG---------RFQN--------------A--LGALIYPIYGQGELPQAFCRRAAVKGCLYVLRMPVI 303 (539)
Q Consensus 249 ~~l~~~~~~~~s~g---------~~g~--------------~--~~~~~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~ 303 (539)
..+..+...-+.+| .++. . .-+.+-.+||...++++|+......+..+.++-++.
T Consensus 194 ~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~ 273 (491)
T KOG1276|consen 194 SSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLS 273 (491)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccc
Confidence 65554443222111 0100 0 001234588899999999998888888888999998
Q ss_pred EEEEecCCCcEEEEEeCCCc
Q 009247 304 SLLTDQNSGSYKGVRLASGQ 323 (539)
Q Consensus 304 ~I~~~~~~g~~~gV~l~~G~ 323 (539)
.+.....++...+.+..+++
T Consensus 274 ~~sk~~~~~~~~tl~~~~~~ 293 (491)
T KOG1276|consen 274 GNSKSRSGNWSLTLVDHSGT 293 (491)
T ss_pred cccccccCCceeEeEcCCCc
Confidence 88654334433445555665
No 32
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.66 E-value=1.2e-14 Score=154.10 Aligned_cols=241 Identities=12% Similarity=0.192 Sum_probs=145.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCcccccccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEIS 94 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (539)
++...+|+|||||++||+||.+|++. |++|+|||+++++||++.++....
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~-------------------------- 72 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE-------------------------- 72 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc--------------------------
Confidence 34457899999999999999999996 689999999999999998754221
Q ss_pred cccccccccCCCceEEecCCCeEEecChHHHHHHHhc------C---ccccccceecccee----eEccCCceeecCCCH
Q 009247 95 NYASRLLSQHPRNFNLDVSGPRVLFCADHAVDLMLKS------G---ASHYLEFKSIDATF----MLDADAKLCSVPDSR 161 (539)
Q Consensus 95 ~~~~~~~~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~------~---~~~y~ef~~~~~~~----~~~~~g~~~~vp~s~ 161 (539)
.+|.++. ||.+...-..+.++|.+. | .++|..|...++.+ ++..+|...
T Consensus 73 -----------~Gy~~~~-G~~~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~------ 134 (576)
T PRK13977 73 -----------KGYVARG-GREMENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEIL------ 134 (576)
T ss_pred -----------CCEEEEC-CCCccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEE------
Confidence 2344444 354322223455555332 1 23555555544432 111122222
Q ss_pred HHhhhccCCC--hHHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCch
Q 009247 162 AAIFKDKSLG--LMEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQE 239 (539)
Q Consensus 162 ~~~f~~~~ls--~~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~ 239 (539)
....++ .+.+..|++++- .. .++..+.++.||+++..+.. .+..+...+..+.
T Consensus 135 ----d~~~~~L~~k~r~~Ll~l~l---~~-------------e~~Ld~~tI~d~f~~~Ff~t---~Fw~~w~t~FaF~-- 189 (576)
T PRK13977 135 ----DTDKFGLSKKDRKELLKLLL---TP-------------EEKLDDKTIEDWFSPEFFET---NFWYYWRTMFAFE-- 189 (576)
T ss_pred ----ECcCCCCCHHHHHHHHHHhc---cC-------------HHHhCCcCHHHHHhhcCchh---HHHHHHHHHHCCc--
Confidence 222233 333334444332 11 12356789999998744433 2222222222222
Q ss_pred hhhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCC--CcEEE
Q 009247 240 VSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS--GSYKG 316 (539)
Q Consensus 240 ~~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~--g~~~g 316 (539)
+..|+.+....+.+|+.-+.+.+... .+.+.+|- .-.|.+.|.+.++..|++++++++|++|..+.++ +++++
T Consensus 190 ---~whSA~E~rry~~rf~~~~~~l~~~s-~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~Vtg 265 (576)
T PRK13977 190 ---KWHSALEMRRYMHRFIHHIGGLPDLS-GLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATA 265 (576)
T ss_pred ---hhhHHHHHHHHHHHHHHhhccCCccc-cccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEE
Confidence 24577777777777766555544322 24455665 3589999999999999999999999999874223 66888
Q ss_pred EEeC-CCc--E---EEcCEEEE
Q 009247 317 VRLA-SGQ--D---ILSHKLVL 332 (539)
Q Consensus 317 V~l~-~G~--~---i~a~~VI~ 332 (539)
|.+. +|+ + ..+|.||+
T Consensus 266 I~~~~~~~~~~I~l~~~DlViv 287 (576)
T PRK13977 266 IHLTRNGKEETIDLTEDDLVFV 287 (576)
T ss_pred EEEEeCCceeEEEecCCCEEEE
Confidence 8774 333 2 35777874
No 33
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.63 E-value=1.2e-14 Score=153.10 Aligned_cols=211 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC-CCCCCCCCCccchhhhhhhhhhh
Q 009247 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD-PSFTVPGSLASSHQQLQESFQAF 356 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~-p~~~~~~l~~~~~~~l~~~~~~l 356 (539)
.+.+.+.+...+...|++|++|++|++|..+ ++++ .|.+.+|+++.||+||++ |...+.+ +...++++......
T Consensus 208 ~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~~--~~~v-~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a 282 (450)
T PF01593_consen 208 MGGLSLALALAAEELGGEIRLNTPVTRIERE--DGGV-TVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRA 282 (450)
T ss_dssp TTTTHHHHHHHHHHHGGGEESSEEEEEEEEE--SSEE-EEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHH
T ss_pred ccchhHHHHHHHhhcCceeecCCcceecccc--cccc-ccccccceEEecceeeecCchhhhhh--hhhccccccccccc
Confidence 4445555556667778899999999999987 5665 577899999999999974 4333233 12344555533222
Q ss_pred ccCCCCceEEEEEEEecCCCCCCC-CceEEEeCCCCCCCCCCCcEEEEEeCCCCccCCCCcEEEEEEEeec-----Cccc
Q 009247 357 SLSDNKGKVARGICITRSSLKPDL-SNFLVIFPPRSLFPEQVTSIRVLQLGGNLAVCPLGMFVLYFSALCD-----EVNQ 430 (539)
Q Consensus 357 ~~~~~~~~v~r~i~i~~~~l~~~~-~~~~~~~p~~~~~~~~~~~v~v~~~~~~~~~cP~G~~vi~~st~~~-----~~~~ 430 (539)
.+......+.+.++.+++++.+.. ....++.++. . ....++...+...+. +.+..+..... .. ...+
T Consensus 283 ~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~~~~~~ 355 (450)
T PF01593_consen 283 IENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDG-F----SPIGYVSDPSKFPGR-PGGGVLTSYVG-GPDAPEWDDLS 355 (450)
T ss_dssp HHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESS-T----SSEEEEEEECCTTSC-TTSEEEEEEEE-HHHHHHHTTSC
T ss_pred ccccccCcceeEEEeeecccccccccccceecccC-c----cccccccccccCccc-ccCCcceeeee-ccccchhcccc
Confidence 233344556677777888865443 2333333332 1 123445554544444 44433333322 21 2234
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCCCCCcccccccccCce----EEEEE-eeEeec---------------CCCCC-CcEEE
Q 009247 431 GKKLLHAALSALQKLLVTGTAGNSSTAQSEDMEEAKPT----LLWSA-LYIQDL---------------SLGQF-GSIIS 489 (539)
Q Consensus 431 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~-~~~~~~---------------~~~~~-~~i~~ 489 (539)
.++.++.+++.|....... ....|. .-|.- .|.+.. ..... ++|++
T Consensus 356 ~e~~~~~~~~~L~~~~~~~-------------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (450)
T PF01593_consen 356 DEEILERVLDDLRKILPGA-------------SIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYF 422 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTG-------------GGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE
T ss_pred hhhhHHHHHHHhhhccccc-------------cccccccccccccccccccccccccccccccccccccccCCcceEEEE
Confidence 5667777777776653210 001111 11211 111110 01222 69999
Q ss_pred cCCCCCCC---ChHHHHHHHHHHHHHh
Q 009247 490 TPTPDGNL---NYNDLLDATEKLYRKL 513 (539)
Q Consensus 490 ~~~~~~~~---~~~~~~~~~~~~~~~i 513 (539)
|+.-...- ..++|+.+++++.++|
T Consensus 423 aG~~~~~~~~~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 423 AGDWTSPGYPGGIEGAILSGRRAAEEI 449 (450)
T ss_dssp -SGGGSSSSTTSHHHHHHHHHHHHHHH
T ss_pred eecccCCCCCCcHHHHHHHHHHHHHHh
Confidence 99876644 7899999999999887
No 34
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=2.2e-14 Score=152.23 Aligned_cols=112 Identities=16% Similarity=0.082 Sum_probs=76.3
Q ss_pred EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCCCCccchhhhh
Q 009247 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPGSLASSHQQLQ 350 (539)
Q Consensus 272 ~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-~p~~~~~~l~~~~~~~l~ 350 (539)
....+|...+.++++. |..|+++..|..|.... ++. +.|+..++..+.+|+||+ .|-..+..-.+.+.|++|
T Consensus 212 ~~~~~G~~~v~~~la~-----~l~I~~~~~v~~i~~~~-~~~-~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp 284 (501)
T KOG0029|consen 212 LLMKGGYEPVVNSLAE-----GLDIHLNKRVRKIKYGD-DGA-VKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLP 284 (501)
T ss_pred hHhhCCccHHHhhcCC-----CcceeeceeeEEEEEec-CCc-eEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCc
Confidence 4567888888887754 99999999999999873 443 345556666699999885 343322332245788888
Q ss_pred hhhhhhccCCCCceEEEEEEEecCCCCCCCCceEEEeCCC
Q 009247 351 ESFQAFSLSDNKGKVARGICITRSSLKPDLSNFLVIFPPR 390 (539)
Q Consensus 351 ~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~~~~~~~~p~~ 390 (539)
..++...++-..+.+.+.++.+++.+=..........++.
T Consensus 285 ~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~ 324 (501)
T KOG0029|consen 285 RWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPET 324 (501)
T ss_pred HHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEcccc
Confidence 8777665655677889999888887643222344444543
No 35
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.54 E-value=1.2e-12 Score=127.33 Aligned_cols=293 Identities=17% Similarity=0.149 Sum_probs=157.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
..+|.|||+|++||+||..|++. ++|+++|++++.||+++|...+-
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--------------------------------- 53 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--------------------------------- 53 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc---------------------------------
Confidence 36899999999999999999976 79999999999999999975320
Q ss_pred ccCCCceEEecCCCeEEecC---hHHHHHHHhcCccccccceeccceeeEccCCcee-ecCCCHHHhhhcc--CCChHHH
Q 009247 102 SQHPRNFNLDVSGPRVLFCA---DHAVDLMLKSGASHYLEFKSIDATFMLDADAKLC-SVPDSRAAIFKDK--SLGLMEK 175 (539)
Q Consensus 102 ~~~~~~~~~dl~Gp~ll~~~---~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~-~vp~s~~~~f~~~--~ls~~~k 175 (539)
....+.+|. | .+++.. -.+..++...|+.....|.+..- .++ +|.+. .--.....+|..+ .+.++--
T Consensus 54 --d~~g~~vDt-G-fiVyn~~tYpnl~~Lf~~iGv~t~as~Msf~v--~~d-~gglEy~g~tgl~~L~aqk~n~l~pRf~ 126 (447)
T COG2907 54 --DGGGVFVDT-G-FIVYNERTYPNLTRLFKTIGVDTKASFMSFSV--SLD-MGGLEYSGLTGLAGLLAQKRNLLRPRFP 126 (447)
T ss_pred --cCCceeecc-e-eEEecCCCcchHHHHHHHcCCCCcccceeEEE--Eec-CCceeeccCCCccchhhccccccchhHH
Confidence 001123333 1 222211 25778888888876655554321 112 22221 1101111233221 1222222
Q ss_pred HHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHH
Q 009247 176 NQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLA 255 (539)
Q Consensus 176 ~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~ 255 (539)
.+|...+.+-+.. ..+ .+ .....+.++.+||++.+.+...++-.++.++-..++... ..++...+. .+.
T Consensus 127 ~mlaeiLrf~r~~--~~~-----~d-~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~--~d~~~~pa~-~~~ 195 (447)
T COG2907 127 CMLAEILRFYRSD--LAP-----SD-NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPL--ADASRYPAC-NFL 195 (447)
T ss_pred HHHHHHHHHhhhh--ccc-----hh-hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcH--hhhhhhhHH-HHH
Confidence 2222222221110 001 01 123456899999999999988777655433221122110 011111111 122
Q ss_pred HHHHhhccccCCCcceEe-ecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE--
Q 009247 256 LYNSSIGRFQNALGALIY-PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-- 332 (539)
Q Consensus 256 ~~~~s~g~~g~~~~~~~~-p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-- 332 (539)
.|....|..--...+.++ ..||+.+-.| ++++..+|.+.++++|.+|..-. +|. .|...+|++-+.|.||+
T Consensus 196 ~f~~nhGll~l~~rp~wrtV~ggS~~yvq---~laa~~~~~i~t~~~V~~l~rlP-dGv--~l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 196 VFTDNHGLLYLPKRPTWRTVAGGSRAYVQ---RLAADIRGRIETRTPVCRLRRLP-DGV--VLVNADGESRRFDAVVIAT 269 (447)
T ss_pred HHHhccCceecCCCCceeEcccchHHHHH---HHhccccceeecCCceeeeeeCC-Cce--EEecCCCCccccceeeeec
Confidence 333322211001122344 5778888888 55678899999999999998753 553 24446799988999884
Q ss_pred CCCCCCCCCCccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCC
Q 009247 333 DPSFTVPGSLASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKP 378 (539)
Q Consensus 333 ~p~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~ 378 (539)
.|++.+ .|+.. +-|+..+.+.. ...+-.+++.-++..+.|
T Consensus 270 h~dqAl-~mL~e---~sp~e~qll~a--~~Ys~n~aVlhtd~~lmP 309 (447)
T COG2907 270 HPDQAL-ALLDE---PSPEERQLLGA--LRYSANTAVLHTDASLMP 309 (447)
T ss_pred ChHHHH-HhcCC---CCHHHHHHHHh--hhhhhceeEEeecccccc
Confidence 566653 33322 22333333321 123345667777777655
No 36
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.8e-11 Score=126.84 Aligned_cols=249 Identities=18% Similarity=0.155 Sum_probs=137.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLLSQ 103 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (539)
.|+|+|||++||+||..|+.+|++|+++|+++++||+++|+.... +.|.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g~~~E----------------------------- 51 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-GNHVE----------------------------- 51 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-CCeee-----------------------------
Confidence 599999999999999999999999999999999999999977532 11110
Q ss_pred CCCceEEecCCCeEEec-ChHHHHHHHhcCccccccceeccceeeEc--cCCcee--ecCCC------HHHhhhccCCCh
Q 009247 104 HPRNFNLDVSGPRVLFC-ADHAVDLMLKSGASHYLEFKSIDATFMLD--ADAKLC--SVPDS------RAAIFKDKSLGL 172 (539)
Q Consensus 104 ~~~~~~~dl~Gp~ll~~-~~~l~~~l~~~~~~~y~ef~~~~~~~~~~--~~g~~~--~vp~s------~~~~f~~~~ls~ 172 (539)
. |=++++. --.++.+|.+.+.+..+.+++....++-. ..|.+- ..|.. ..+.++.+.+..
T Consensus 52 --~-------glh~f~~~Y~n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~ 122 (485)
T COG3349 52 --H-------GLHVFFGCYYNLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPR 122 (485)
T ss_pred --e-------eeEEechhHHHHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCH
Confidence 0 1223322 22567777777776555555443333211 011111 11111 112333444444
Q ss_pred HHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHH-HH---HHHHhcccCCchhhhhhhcch
Q 009247 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKS-IV---LYAIAMADYDQEVSEYVLKTR 248 (539)
Q Consensus 173 ~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~-~~---~~~i~l~~~~~~~~~~~~s~~ 248 (539)
.+|.. |+-.+...... ....+.+..+.+|.|||++++..+.... .+ .+++.+. ..+ ..|+.
T Consensus 123 ~~~~~---~~~~l~~~~~g------~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~--~~e----~~sa~ 187 (485)
T COG3349 123 REKIR---FVLRLGDAPIG------ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFI--DPE----GCSAR 187 (485)
T ss_pred HHHhH---Hhhccccccch------hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhccc--Ccc----cCcch
Confidence 44433 22111100000 0122456778999999998776654332 22 2222221 222 23444
Q ss_pred hHHHHHHHHHHhhccccCCCcceEeecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEec--CCCcEEEEEeCCCcEE
Q 009247 249 DGINRLALYNSSIGRFQNALGALIYPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQ--NSGSYKGVRLASGQDI 325 (539)
Q Consensus 249 ~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~g-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~--~~g~~~gV~l~~G~~i 325 (539)
..+..+..++ +..++. +.....+++.. -+.+...+...+.|.+++++.+|+.|..+. .+.+++|+.+. +...
T Consensus 188 ~~lt~~~~~~--~~~~~~--~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~ 262 (485)
T COG3349 188 FFLTILNLFL--IVTLEA--SILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQ 262 (485)
T ss_pred hHHHHHHHHH--HhccCc--chhhhhcCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-Ccce
Confidence 3333333322 222221 11334667765 455777777788999999999999998753 13456777765 5544
Q ss_pred EcCEEE
Q 009247 326 LSHKLV 331 (539)
Q Consensus 326 ~a~~VI 331 (539)
.+..++
T Consensus 263 e~~~~~ 268 (485)
T COG3349 263 EQQAAL 268 (485)
T ss_pred Eeeehh
Confidence 444433
No 37
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.24 E-value=9.6e-10 Score=112.02 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=70.8
Q ss_pred eEeecCCcchHHHHHHHHHH----HcC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC-CCCC-CC
Q 009247 271 LIYPIYGQGELPQAFCRRAA----VKG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF-TVPG-SL 342 (539)
Q Consensus 271 ~~~p~gG~geL~qal~r~~a----~~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~-~~~~-l~ 342 (539)
..+-.-|...+...|.+... .+| ++++++++|..|..+ +++++ .|++.||+.+.||+||+.-+. .+.+ ..
T Consensus 215 ~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~-~~~~v-~l~c~dg~v~~adhVIvTvsLGvLk~~h~ 292 (498)
T KOG0685|consen 215 LIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK-NTGEV-KLRCSDGEVFHADHVIVTVSLGVLKEQHH 292 (498)
T ss_pred heechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC-CCCcE-EEEEeCCcEEeccEEEEEeechhhhhhhh
Confidence 33445566666665544222 233 566677999999876 24554 689999999999999975331 1111 01
Q ss_pred ccchhhhhhhhhhhccCCCCceEEEEEEEecCCCCCCC
Q 009247 343 ASSHQQLQESFQAFSLSDNKGKVARGICITRSSLKPDL 380 (539)
Q Consensus 343 ~~~~~~l~~~~~~l~~~~~~~~v~r~i~i~~~~l~~~~ 380 (539)
.-+.|+||..+..-.++...|.+.|..+=+++|+-+..
T Consensus 293 ~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~ 330 (498)
T KOG0685|consen 293 KLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSD 330 (498)
T ss_pred hhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCC
Confidence 12678888877765566667778888888999876543
No 38
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=116.81 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=51.1
Q ss_pred Eeec-CCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 272 IYPI-YGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 272 ~~p~-gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
++|. .....|.+++.+.++..|++++++++|.+|..+ + ....|.+.+|++++||.+|+
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~--~-~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD--D-SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec--C-ceEEEEcCCCCEEEccEEEE
Confidence 6898 678999999999999999999999999999876 3 34578888998999999885
No 39
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.20 E-value=3.3e-11 Score=92.72 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=38.2
Q ss_pred EECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchh
Q 009247 27 VIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIA 67 (539)
Q Consensus 27 IIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~ 67 (539)
|||+|++||++|.+|+++|++|+|+|+++++||+++++..+
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence 89999999999999999999999999999999999997764
No 40
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.20 E-value=9.7e-11 Score=120.47 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=39.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+||+|||||++||++|..|++.|++|+|+|+++++||.+.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeee
Confidence 799999999999999999999999999999999999987664
No 41
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.16 E-value=1.5e-10 Score=119.03 Aligned_cols=60 Identities=30% Similarity=0.409 Sum_probs=52.3
Q ss_pred eEeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG---~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
+.+|.+| ...+.++|.+.++..|++++.+++|++|..+ ++++.+|++.+|+ ++||+||..
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v~gv~~~~g~-i~ad~vV~a 198 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD--GGRVTGVRTSDGE-IRADRVVLA 198 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE--TTEEEEEEETTEE-EEECEEEE-
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc--ccccccccccccc-cccceeEec
Confidence 5678888 6899999999999999999999999999987 7888889998887 999999953
No 42
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.03 E-value=1e-09 Score=106.31 Aligned_cols=100 Identities=20% Similarity=0.386 Sum_probs=69.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYASRLL 101 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (539)
.+|.+|||+|++|+++|..|++.|++|+|+||++++||+|-+...++ . .+.++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-------t-------------GIlvH------- 53 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-------T-------------GILVH------- 53 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-------C-------------CeEEe-------
Confidence 38999999999999999999999999999999999999998754321 0 01111
Q ss_pred ccCCCceEEecCCCeEEecChHHHHHHHhcCccccccceeccceeeEccCCceeecCCCHH
Q 009247 102 SQHPRNFNLDVSGPRVLFCADHAVDLMLKSGASHYLEFKSIDATFMLDADAKLCSVPDSRA 162 (539)
Q Consensus 102 ~~~~~~~~~dl~Gp~ll~~~~~l~~~l~~~~~~~y~ef~~~~~~~~~~~~g~~~~vp~s~~ 162 (539)
.| ||+++++.+.-|--. +.++.||.......+-..+|..+.+|....
T Consensus 54 -----kY-----GpHIFHT~~~~Vwdy----v~~F~e~~~Y~hrVla~~ng~~~~lP~nl~ 100 (374)
T COG0562 54 -----KY-----GPHIFHTDNKRVWDY----VNQFTEFNPYQHRVLALVNGQLYPLPFNLN 100 (374)
T ss_pred -----ec-----cCceeecCchHHHHH----HhhhhhhhhhccceeEEECCeeeeccccHH
Confidence 23 899998877433222 124455554433322123789999998654
No 43
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.99 E-value=1.6e-09 Score=112.96 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=48.2
Q ss_pred eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
-.||.-. ...+.++|.+.+...|++++++++|++|..+ ++++..|++++++++.||+||+
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~--~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK--EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE--TTEEEEEEETTTEEEEESEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec--CCceeEeeccCcccccCCEEEE
Confidence 4688775 6799999999999999999999999999887 6677789887888999999995
No 44
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.96 E-value=6.9e-09 Score=107.38 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=50.0
Q ss_pred eEeecCC---cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE-EEcCEEEEC
Q 009247 271 LIYPIYG---QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD-ILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG---~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~-i~a~~VI~~ 333 (539)
.+.|-+| .+++..+|.+.+...|++++||++|+.|.... +| ++.+.+++|++ ++|+.||..
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg-~~~~~~~~g~~~~~ak~Vin~ 206 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS-DG-VFVLNTSNGEETLEAKFVINA 206 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeC-Cc-eEEEEecCCcEEEEeeEEEEC
Confidence 4567676 36899999999999999999999999998872 33 55677788887 999999954
No 45
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=1.2e-08 Score=107.03 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=46.8
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
+++|..|. ..+.++|.+.+...|++++++++|.+|..+ +++ +.|++.+| +++||+||..
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~--~~~-~~V~~~~g-~i~ad~vV~A 199 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEH--ANG-VVVRTTQG-EYEARTLINC 199 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEec--CCe-EEEEECCC-EEEeCEEEEC
Confidence 55666663 688999999999999999999999999765 444 46777666 7999999853
No 46
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=5.8e-07 Score=88.04 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFT 337 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-~p~~~ 337 (539)
.-..+|...++.+|+.++-|..|+.+....+++..++|++++|..+.|+++|. ...++
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 33467778889999999999999999865456667889999999999999885 34454
No 47
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.88 E-value=7.2e-08 Score=103.17 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=45.4
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
++.|..|. ..+.++|.+.+...|++|+.+++|++|.. ++. +.|++.+| +++|++||+.
T Consensus 172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~---~~~-~~v~t~~g-~v~A~~VV~A 232 (460)
T TIGR03329 172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE---GQP-AVVRTPDG-QVTADKVVLA 232 (460)
T ss_pred EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee---CCc-eEEEeCCc-EEECCEEEEc
Confidence 55677773 47889999999999999999999999863 232 46777666 6999998853
No 48
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.84 E-value=2.2e-08 Score=104.33 Aligned_cols=58 Identities=21% Similarity=0.179 Sum_probs=44.5
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
++.|.+|. ..+.++|++.++..|++++.+++|++|..+ +++ +.|++++| +++|++||+
T Consensus 134 ~~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~--~~~-~~v~~~~~-~i~a~~vV~ 194 (380)
T TIGR01377 134 LLDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPT--ELL-VTVKTTKG-SYQANKLVV 194 (380)
T ss_pred EEcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEec--CCe-EEEEeCCC-EEEeCEEEE
Confidence 44566663 478889989888999999999999999765 444 45776555 799998874
No 49
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.83 E-value=8.1e-08 Score=103.05 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=46.2
Q ss_pred ecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC--CC--cEEEcCEEEE
Q 009247 274 PIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SG--QDILSHKLVL 332 (539)
Q Consensus 274 p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G--~~i~a~~VI~ 332 (539)
+.+|...+.+.|.+.++..|++++++++|++|..+ ++++++|+.. +| ..++|+.||+
T Consensus 126 ~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~--~g~v~gv~~~~~~g~~~~i~a~~VIl 186 (466)
T PRK08274 126 FWGGGKALVNALYRSAERLGVEIRYDAPVTALELD--DGRFVGARAGSAAGGAERIRAKAVVL 186 (466)
T ss_pred ecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCeEEEEEEEccCCceEEEECCEEEE
Confidence 44555688999999999999999999999999876 6788888763 33 3589999985
No 50
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.74 E-value=7e-07 Score=97.51 Aligned_cols=44 Identities=30% Similarity=0.494 Sum_probs=40.4
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
..+.++||||||+| +|++||...+++|.+|+||||.+.+||.+.
T Consensus 12 ~~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 12 VRDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CCCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 44558999999999 999999999999999999999999999776
No 51
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.74 E-value=3.2e-07 Score=96.90 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=47.3
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
+.+|..|. ..+.++|.+.+...|++|+.+++|++|..+ ++++++|++. +.+++|++||+
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~t~-~~~~~a~~VV~ 251 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE--GGRITGVQTG-GGVITADAYVV 251 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec--CCEEEEEEeC-CcEEeCCEEEE
Confidence 55677663 378899999899999999999999999875 5666678765 45799999985
No 52
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.74 E-value=1.3e-07 Score=103.23 Aligned_cols=60 Identities=27% Similarity=0.287 Sum_probs=47.0
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC---CC--cEEEcCEEEE
Q 009247 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SG--QDILSHKLVL 332 (539)
Q Consensus 270 ~~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G--~~i~a~~VI~ 332 (539)
++.+|. |. ..+..++++.+..+|++++.+++|++|..+ ++++++|++. +| .+|+|++||.
T Consensus 138 a~~~~d-g~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 138 AVKVPD-GTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIRE--GDTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred EEEecC-cEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEc--CCeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 366774 53 478888888889999999999999999876 6778788752 33 3689999985
No 53
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.72 E-value=1.5e-07 Score=98.00 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=45.9
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSF 336 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-~p~~ 336 (539)
++.|..|. ..+.+++.+.+...|++++++++|++|..+ ++. +.|++++| +++||+||. ...+
T Consensus 138 ~~~~~~g~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~--~~~-~~v~~~~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 138 LFEPDGGFLRPELAIKAHLRLAREAGAELLFNEPVTAIEAD--GDG-VTVTTADG-TYEAKKLVVSAGAW 203 (376)
T ss_pred EEcCCCCEEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEee--CCe-EEEEeCCC-EEEeeEEEEecCcc
Confidence 34566663 467777878888899999999999999875 444 46777666 799999884 4433
No 54
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.71 E-value=1e-08 Score=95.11 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=35.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||+|||+|.+||+||++|+++|+||+++|++..+||..+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 469999999999999999999999999999999999998764
No 55
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.67 E-value=9.4e-07 Score=93.08 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=46.1
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
++.+..|. ..+.++|++.+...|++++.+++|++|... +++++++|++.+| +++|++||+.
T Consensus 172 ~~~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~-~~~~~~~v~t~~g-~i~a~~vVva 235 (407)
T TIGR01373 172 LLQRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRR-DGGRVIGVETTRG-FIGAKKVGVA 235 (407)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCCcEEEEEeCCc-eEECCEEEEC
Confidence 33455553 367788888889999999999999999754 2466777887777 6999988753
No 56
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.5e-08 Score=93.34 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+-||||||+|.+||+||++||++|.||+++|++.++||-.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 467999999999999999999999999999999999998654
No 57
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.67 E-value=6.4e-07 Score=95.93 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred eEeecCC-c---chHHHHHHHHHHH----cC--cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYG-Q---GELPQAFCRRAAV----KG--CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG-~---geL~qal~r~~a~----~G--g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
.+.|..| . +.++++|.+.++. .| ++++++++|+.|..+ ++..+.|++.+| +++|+.||+.
T Consensus 199 l~~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~--~~~~~~V~T~~G-~i~A~~VVva 268 (497)
T PTZ00383 199 LYVPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS--NDSLYKIHTNRG-EIRARFVVVS 268 (497)
T ss_pred EEeCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec--CCCeEEEEECCC-EEEeCEEEEC
Confidence 5567543 2 6899999998888 78 678999999999875 455667887766 6999998853
No 58
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.66 E-value=3.3e-07 Score=102.54 Aligned_cols=58 Identities=22% Similarity=0.241 Sum_probs=46.8
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
+++|..|. ..+.++|.+.+.. |++++.+++|++|..+ ++++ .|++.+|+.++|++||.
T Consensus 397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~--~~~~-~v~t~~g~~~~ad~VV~ 457 (662)
T PRK01747 397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE--DDGW-QLDFAGGTLASAPVVVL 457 (662)
T ss_pred EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe--CCEE-EEEECCCcEEECCEEEE
Confidence 56787774 4888999888888 9999999999999875 5554 48777787788999885
No 59
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=7.9e-07 Score=94.15 Aligned_cols=49 Identities=24% Similarity=0.356 Sum_probs=43.3
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccc
Q 009247 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 17 ~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
.+.+.++||+|||||++|+-+|+.+|.+|++|+++|++|+-.|..+..+
T Consensus 7 ~~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrst 55 (532)
T COG0578 7 RLRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRST 55 (532)
T ss_pred cccccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCccc
Confidence 3445789999999999999999999999999999999999988766533
No 60
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.52 E-value=9.1e-08 Score=100.37 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=40.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||||++|++||+.|+++|.+|+|||+++.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 5699999999999999999999999999999999999997765
No 61
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.51 E-value=7.4e-06 Score=85.29 Aligned_cols=249 Identities=12% Similarity=0.157 Sum_probs=124.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCcccccchhhhhhhhhcCCCCCCCCCCCccccccccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSSLSIADLTHFLNSHSTPSSVCPDPLYSDVEISNYA 97 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (539)
+.++-|||+|+++|+||++|-|. |.+|.+||+.+..||........+ ..|+..++-.... -| +-.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~-~GYv~RgGR~~~~----~~---eclwd- 72 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE-NGYVIRGGRMMEF----HY---ECLWD- 72 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC-CCeeecCCccccc----hh---HHHHH-
Confidence 35789999999999999999886 669999999999999986643221 1233222211000 00 00000
Q ss_pred ccccccCCCceEEecCCCeEEecCh-HHHHHHHhcCccccccceecccee----eEccCCceeecCCCHHHhhhccCCCh
Q 009247 98 SRLLSQHPRNFNLDVSGPRVLFCAD-HAVDLMLKSGASHYLEFKSIDATF----MLDADAKLCSVPDSRAAIFKDKSLGL 172 (539)
Q Consensus 98 ~~~~~~~~~~~~~dl~Gp~ll~~~~-~l~~~l~~~~~~~y~ef~~~~~~~----~~~~~g~~~~vp~s~~~~f~~~~ls~ 172 (539)
. +... |++- .++ ...+.+. .|..-++.+ +...+|... +. ...-.|+.
T Consensus 73 --L---------ls~I-PSle-~p~~SVlDe~~--------~~n~~~p~~s~~Rli~~~G~~~--~~-----~~~~~Ls~ 124 (500)
T PF06100_consen 73 --L---------LSSI-PSLE-DPGKSVLDEIY--------WFNKEDPNYSKARLIDKRGQIV--DT-----DSKFGLSE 124 (500)
T ss_pred --H---------HHhC-CCCC-CCCCcHHHHHH--------HhccCCCCCcceeeeccCCccc--cc-----cCcCCCCH
Confidence 0 0001 2110 000 1112111 111111111 111122211 11 11124566
Q ss_pred HHHHHHHHHHHHHhcccccCccccccccccccccCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHH
Q 009247 173 MEKNQLMRFFKLVQGHLSLDESEENNVRISEEDLDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGIN 252 (539)
Q Consensus 173 ~~k~~l~kfl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~ 252 (539)
+.+..|+|++-. ++ ....+..+.||+..-.+.. +|..+.-.+..+ . +.-|+.+.-.
T Consensus 125 k~r~eL~kL~l~--------~E--------~~L~~~~I~d~F~~~FF~S---nFW~~W~T~FAF--q---pWhSa~E~rR 180 (500)
T PF06100_consen 125 KDRMELIKLLLT--------PE--------EDLGDKRIEDWFSESFFES---NFWYMWSTMFAF--Q---PWHSAVEFRR 180 (500)
T ss_pred HHHHHHHHHhcC--------CH--------HHhCcccHHHhcchhhhcC---chhHhHHHhhcc--C---cchhHHHHHH
Confidence 666677776531 10 1234456666665311111 222221112111 1 1224555444
Q ss_pred HHHHHHHhhccccCCCcceEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--cEEEEEe-CCCcE--E-
Q 009247 253 RLALYNSSIGRFQNALGALIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRL-ASGQD--I- 325 (539)
Q Consensus 253 ~~~~~~~s~g~~g~~~~~~~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g--~~~gV~l-~~G~~--i- 325 (539)
.+.+|+.-+.+...- .++.+.+|- .-.|+.-|.+..+..|+.+++|+.|+.|..+.+++ .+.++.+ .+|+. |
T Consensus 181 yl~Rf~h~~~~l~~l-~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~ 259 (500)
T PF06100_consen 181 YLHRFIHEIPGLNDL-SGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETID 259 (500)
T ss_pred HHHHHHHhcCCCCCc-cccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEE
Confidence 555666555443321 225566776 45899999999999999999999999998864333 2334443 45542 3
Q ss_pred --EcCEEEE
Q 009247 326 --LSHKLVL 332 (539)
Q Consensus 326 --~a~~VI~ 332 (539)
.-|.|++
T Consensus 260 l~~~DlV~v 268 (500)
T PF06100_consen 260 LGPDDLVFV 268 (500)
T ss_pred eCCCCEEEE
Confidence 2466664
No 62
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.48 E-value=1.4e-07 Score=92.31 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||+|||+|.+||+||++|+++|++|+++||+..+||..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 46999999999999999999999999999999999998763
No 63
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.45 E-value=1.9e-07 Score=91.74 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||+|||+|++||+||.+|+++|++|+++|++..+||..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 46999999999999999999999999999999999998854
No 64
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.44 E-value=1.9e-07 Score=88.80 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=42.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccchhh
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLSIAD 68 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~~~~ 68 (539)
.+++|||+|++||+||..|+.+|++|+|+||..-+|||.+|-.+++
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~ 47 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDG 47 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCC
Confidence 3699999999999999999999999999999999999999977654
No 65
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.42 E-value=2.4e-07 Score=98.14 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.+|||||||||++|++||+.|+++|++|++|||++.+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4699999999999999999999999999999999988764
No 66
>PRK10015 oxidoreductase; Provisional
Probab=98.39 E-value=3e-07 Score=97.41 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=36.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.+|||||||+|++|++||+.|+++|++|+++||++++|-.
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k 43 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCK 43 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcc
Confidence 4699999999999999999999999999999999887643
No 67
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.37 E-value=3.6e-07 Score=97.90 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.|.+|||||||+|.+|+.||..|++.|++|+++|+++.+||.|..
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 356799999999999999999999999999999999999998754
No 68
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.35 E-value=5e-07 Score=95.40 Aligned_cols=45 Identities=22% Similarity=0.485 Sum_probs=39.2
Q ss_pred CCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 13 PPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 13 ~~~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
|..|......+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 9 ~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 9 PTLPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred CCCCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 345555556799999999999999999999999999999999864
No 69
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=3.9e-07 Score=97.63 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
|++|||||||+|.+|+.||.++++.|++|+++|+++.+||.|..
T Consensus 1 m~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 1 MASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred CCcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 45699999999999999999999999999999998899998743
No 70
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.33 E-value=4.7e-07 Score=96.47 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC-CCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP-FYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~-~~GG~~~s 63 (539)
|++|||||||+|.+|+.||.+|++.|++|+++|+.+ .+||.|..
T Consensus 1 ~~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 1 MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred CCcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 357999999999999999999999999999999987 48998853
No 71
>PRK07121 hypothetical protein; Validated
Probab=98.32 E-value=7e-07 Score=96.44 Aligned_cols=42 Identities=26% Similarity=0.363 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+||+||+.++++|.+|+||||+...||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA 60 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence 469999999999999999999999999999999999998653
No 72
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.31 E-value=6.2e-07 Score=95.49 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
....+|+|||||.+||+||.+|++.|.+|+|+|+++.+||.|..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34579999999999999999999999999999999999999864
No 73
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.31 E-value=5.2e-07 Score=92.52 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.8
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
++||||||||++||++|..|+|+|++|+|+|+++..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 489999999999999999999999999999998764
No 74
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.29 E-value=6.5e-07 Score=95.27 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=39.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC-CCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF-YGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~-~GG~~~ 62 (539)
|.+|||||||+|.+|+.||..|++.|++|+++|+++. +||.|-
T Consensus 1 ~~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 1 MLTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred CCccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 3469999999999999999999999999999999875 799764
No 75
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.28 E-value=8.6e-07 Score=94.26 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=36.5
Q ss_pred CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 15 YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 15 ~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.+++...+|||||||||++|++||..|+++|++|+++|++.
T Consensus 32 ~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 32 SKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 34455567999999999999999999999999999999985
No 76
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.28 E-value=9.7e-06 Score=86.13 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=48.6
Q ss_pred EeecCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCC-CcEEEcCEEEE
Q 009247 272 IYPIYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQDILSHKLVL 332 (539)
Q Consensus 272 ~~p~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~~i~a~~VI~ 332 (539)
.++.+|...+.++|.+.++.+|++|+++++|++|+.+.+++++++|...+ +.+++|+.||+
T Consensus 116 ~~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIl 177 (432)
T TIGR02485 116 AFLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVL 177 (432)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEE
Confidence 45666667899999999999999999999999998752246788887543 45799999985
No 77
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.27 E-value=7e-07 Score=94.58 Aligned_cols=40 Identities=30% Similarity=0.501 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
||||||||.+|++||..+||+|.+|+++|+++.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 78
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.27 E-value=7.6e-07 Score=94.39 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=45.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCcccccchhh
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSSLSIAD 68 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~~GG~~~s~~~~~ 68 (539)
.++++||+|||||.+|+.+|++|.++|.. +++|||++.+||.|+....++
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~ 55 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG 55 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence 35679999999999999999999999999 999999999999998866554
No 79
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.27 E-value=8.6e-07 Score=95.95 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=39.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+..|||||||||+.|+.+|+.|+++|++|+++||++..+|..+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~ 46 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS 46 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence 4569999999999999999999999999999999988777653
No 80
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.25 E-value=1e-06 Score=88.10 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
|||+|||||++||++|..|++.|.+|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 7999999999999999999999999999999998765
No 81
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.24 E-value=1.1e-06 Score=92.02 Aligned_cols=40 Identities=33% Similarity=0.471 Sum_probs=36.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
++|..+||||||+|++||++|..|+++|++|+|+|+++..
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 3566799999999999999999999999999999999765
No 82
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1e-06 Score=94.45 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
|.+|||||||+|.+|+.||.+|++.|++|+++|+ +.+||.|..
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~~ 43 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCLN 43 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccceec
Confidence 4569999999999999999999999999999999 789998753
No 83
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.24 E-value=1.1e-05 Score=85.39 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=49.1
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV 331 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI 331 (539)
.+.|.-|. ..+.|++++.+...|+.|.-+++|++|.+. +++..+|++.-|. |+|.+||
T Consensus 176 Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G~-iet~~~V 236 (856)
T KOG2844|consen 176 LYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHGS-IETECVV 236 (856)
T ss_pred eecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCcc-eecceEE
Confidence 44576673 589999999999999999999999999987 5666799987775 8999988
No 84
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=1.1e-06 Score=94.29 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+.+|||||||+|.+|+.||.+|++.|++|+++|+++.+||.|.
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 3469999999999999999999999999999999999999764
No 85
>PTZ00058 glutathione reductase; Provisional
Probab=98.23 E-value=1.4e-06 Score=94.74 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=43.8
Q ss_pred cCCCC-CCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 10 LPVPP-YPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 10 ~~~~~-~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
-|+|+ +++....+|||||||+|.+|..||..+++.|++|+++|++ .+||.|-.
T Consensus 35 ~~~~~~~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 35 SSAPTHLKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred cCcccccccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 35554 4444445799999999999999999999999999999996 79998754
No 86
>PRK06116 glutathione reductase; Validated
Probab=98.22 E-value=1e-06 Score=94.02 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=38.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 4699999999999999999999999999999996 89997743
No 87
>PRK06370 mercuric reductase; Validated
Probab=98.22 E-value=1.3e-06 Score=93.67 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=39.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+|.+|||||||+|.+|+.||.+|++.|++|+++|+. ..||.|..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 45 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCVN 45 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCceec
Confidence 566799999999999999999999999999999996 56776643
No 88
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.21 E-value=1.5e-06 Score=94.15 Aligned_cols=44 Identities=32% Similarity=0.481 Sum_probs=39.1
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
++.+|||||||||+.|+.+|+.|+++|.+|++|||++..+|..+
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~GtS~ 46 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSS 46 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCCch
Confidence 35669999999999999999999999999999999987666554
No 89
>PRK08013 oxidoreductase; Provisional
Probab=98.21 E-value=1.3e-06 Score=91.87 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
|.++||+|||||++||++|+.|+++|++|+|+|+++..
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999999864
No 90
>PRK09126 hypothetical protein; Provisional
Probab=98.20 E-value=1.4e-06 Score=91.35 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=34.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
.++||||||||++||++|..|+++|++|+|+||++.+
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 3699999999999999999999999999999999875
No 91
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.19 E-value=1.4e-06 Score=93.41 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.|||||||+|.+|+.||..|++.|++|+++|+ +.+||.|..
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 38999999999999999999999999999999 889998764
No 92
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.19 E-value=1.7e-06 Score=93.62 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~ 101 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTM 101 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence 478999999999999999999999999999999999999643
No 93
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.17 E-value=1.5e-06 Score=92.61 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||||+|.+|+.||.++++.|++|+++|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 59999999999999999999999999999999 589998763
No 94
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.17 E-value=1.9e-06 Score=90.93 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
+||||||||+.|+++|..|+++|++|+||||++.+|+-+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 699999999999999999999999999999999776444
No 95
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.17 E-value=1.7e-06 Score=90.44 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=33.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
|+.+||+|||||++||++|++|++.|++|+++|+++
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 345899999999999999999999999999999875
No 96
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=2e-06 Score=92.27 Aligned_cols=43 Identities=21% Similarity=0.383 Sum_probs=38.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+.+|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 2 ~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~ 44 (466)
T PRK07818 2 MTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN 44 (466)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence 34699999999999999999999999999999985 77887754
No 97
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=1.7e-06 Score=92.65 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=38.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||+|.+|+.||..|++.|++|+++|++. +||.|..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 46999999999999999999999999999999987 9997754
No 98
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.16 E-value=2.1e-06 Score=90.05 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
..|.+.|.+.++..|++++.+++|+++..+ ++. +.|++++|++++||.|| ++.
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vV~AdG 166 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQD--ADR-VRLRLDDGRRLEAALAIAADG 166 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEec--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 467777878788889999999999999865 444 35777889999999988 444
No 99
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.15 E-value=1.8e-06 Score=92.05 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=37.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+|||||||+|.+|+.||..|++.|++|+++|++ .+||.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 599999999999999999999999999999995 6899774
No 100
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.15 E-value=1.8e-06 Score=91.33 Aligned_cols=54 Identities=26% Similarity=0.396 Sum_probs=46.5
Q ss_pred CcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009247 277 GQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (539)
Q Consensus 277 G~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~a~~VI~ 332 (539)
+...+.+.|.+.++.+|++|+++++|++++++ +++++||... +|+ +|+|+.||+
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e--~g~V~Gv~~~~~~~g~~~~i~A~aVIl 197 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITE--DGRVTGVVAENPADGEFVRIKAKAVIL 197 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEE--TTEEEEEEEEETTTCEEEEEEESEEEE
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEe--CCceeEEEEEECCCCeEEEEeeeEEEe
Confidence 34689999999999999999999999999997 7899999865 455 478999985
No 101
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.14 E-value=1.6e-06 Score=81.82 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=32.6
Q ss_pred EEECCChhHHHHHHHHhhCCCe-EEEeccCCCCCCcccc
Q 009247 26 IVIGTGLPESVISAAASASGKS-VLHLDPNPFYGSHFSS 63 (539)
Q Consensus 26 iIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~~GG~~~s 63 (539)
+|||||++||++|+.|.+.|.+ |++||+++.+||.|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~ 39 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRR 39 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHC
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEE
Confidence 7999999999999999999999 9999999999999874
No 102
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.14 E-value=2.6e-06 Score=89.20 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=31.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
|||||||||++|++||..|+++|++|+++|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999998
No 103
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.14 E-value=2.1e-06 Score=92.82 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSH 60 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~-~~~GG~ 60 (539)
+.+|||||||||++|+.||.++||.|++|+++|++ +.+|+.
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 45699999999999999999999999999999998 477763
No 104
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.13 E-value=2.1e-06 Score=90.45 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
+|..+||+|||||++||++|+.|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 355789999999999999999999999999999997
No 105
>PLN02463 lycopene beta cyclase
Probab=98.13 E-value=2.8e-06 Score=90.00 Aligned_cols=47 Identities=30% Similarity=0.621 Sum_probs=39.9
Q ss_pred cCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 10 ~~~~~~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
...|.+.+.....|||||||||++||++|+.|+++|++|+++|+++.
T Consensus 16 ~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 16 FELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 34455555556679999999999999999999999999999999763
No 106
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.13 E-value=2.5e-06 Score=91.71 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..|||||||+|.+|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4699999999999999999999999999999996 78998854
No 107
>PLN02661 Putative thiazole synthesis
Probab=98.12 E-value=2.5e-06 Score=86.27 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=36.7
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCCCCc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFYGSH 60 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~GG~ 60 (539)
++||+|||+|++|++||+.|+++ |++|+++|++..+||.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG 131 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG 131 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence 58999999999999999999986 9999999999999883
No 108
>PRK06184 hypothetical protein; Provisional
Probab=98.11 E-value=2.8e-06 Score=92.00 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
|+++||+|||||++||++|+.|++.|.+|+|+||++.+
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 45799999999999999999999999999999999865
No 109
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.11 E-value=2.8e-06 Score=89.20 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
+||||||||++|++||..|+++|++|+++|++...+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~ 38 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP 38 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC
Confidence 69999999999999999999999999999998765433
No 110
>PRK07045 putative monooxygenase; Reviewed
Probab=98.11 E-value=2.7e-06 Score=88.96 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=41.4
Q ss_pred hHHHHHHHHHH-HcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 280 ELPQAFCRRAA-VKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 280 eL~qal~r~~a-~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
.|-+.|.+.++ ..|.++++++.|+.|..+. ++.++.|++++|++++||.|| ++.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~~g~~~~~~~vIgADG 162 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDA-DGTVTSVTLSDGERVAPTVLVGADG 162 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECC-CCcEEEEEeCCCCEEECCEEEECCC
Confidence 56666666654 4578999999999998762 555567888899999999999 454
No 111
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.10 E-value=2.3e-06 Score=85.99 Aligned_cols=39 Identities=36% Similarity=0.625 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (539)
|||||||+|.+|+++|.+|+++| ++|+|||+..++....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~ 40 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED 40 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence 89999999999999999999998 6999999998876655
No 112
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.10 E-value=2.9e-06 Score=85.15 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
|||||||||++||.+|..|++.|++|+++|+++ .||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 699999999999999999999999999999987 7886643
No 113
>PRK07236 hypothetical protein; Provisional
Probab=98.10 E-value=3.1e-06 Score=88.48 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
|..+||||||||++||++|..|++.|++|+|+|+++.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5668999999999999999999999999999999864
No 114
>PRK14694 putative mercuric reductase; Provisional
Probab=98.09 E-value=3.2e-06 Score=90.77 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..+|||||||||.+|++||..|++.|++|+++|++ .+||.|..
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n 46 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN 46 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence 45799999999999999999999999999999996 69998753
No 115
>PRK13748 putative mercuric reductase; Provisional
Probab=98.09 E-value=2.9e-06 Score=93.24 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||||||||.+|+.||..|++.|++|+++|++ .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 5699999999999999999999999999999997 89998754
No 116
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=3.6e-06 Score=90.50 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=39.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEecc------CCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP------NPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~------~~~~GG~~~s 63 (539)
.+|||||||+|.+|++||.+|++.|++|+++|+ +..+||.|..
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 469999999999999999999999999999998 4788998854
No 117
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.08 E-value=3.2e-06 Score=88.52 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=34.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
...|||||||||++||++|+.|+++|++|+|+|++..
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 3569999999999999999999999999999999863
No 118
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.08 E-value=4.4e-06 Score=95.50 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+.++|+|||||.+||+||.+|++.|++|+|+|+++.+||..+.
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 35689999999999999999999999999999999999999754
No 119
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.08 E-value=3.4e-06 Score=88.42 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
...||+|||||++||++|..|+++|++|+|+||++..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 35799999999999999999999999999999997653
No 120
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.07 E-value=3.5e-06 Score=88.09 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
.+||+|||||++||++|+.|++.|++|+|+|+++.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 5899999999999999999999999999999998754
No 121
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.07 E-value=3.2e-06 Score=88.10 Aligned_cols=53 Identities=25% Similarity=0.228 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 279 GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
..+-+.|.+.+...| ++++.+++|++|..+ ++.+ .|++.+|+++.||.|| ++.
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~--~~~~-~v~~~~g~~~~~~~vi~adG 160 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRH--SDHV-ELTLDDGQQLRARLLVGADG 160 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEec--CCee-EEEECCCCEEEeeEEEEeCC
Confidence 467777877777777 899999999999765 4443 5778899999999988 444
No 122
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.07 E-value=4.7e-06 Score=91.29 Aligned_cols=46 Identities=22% Similarity=0.379 Sum_probs=38.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC--CCcccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY--GSHFSSLS 65 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~--GG~~~s~~ 65 (539)
+.++||+|||||++||++|+.|++.|.+|+|+||++.+ +++...+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~ 68 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFA 68 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEc
Confidence 35689999999999999999999999999999999865 44444433
No 123
>PRK12831 putative oxidoreductase; Provisional
Probab=98.07 E-value=4.8e-06 Score=89.07 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=41.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...+..||+|||+|.+||+||.+|++.|++|+++|+++.+||.+.
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 344568999999999999999999999999999999999999874
No 124
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.07 E-value=3.9e-06 Score=91.80 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--CCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--FYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--~~GG~~~ 62 (539)
.++||||||+|++||+||+.++++|.+|+||||.+ .+||++.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 46899999999999999999999999999999999 8899654
No 125
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.06 E-value=3.7e-06 Score=91.17 Aligned_cols=41 Identities=22% Similarity=0.330 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+| +||+||+.++++|.+|+||||...+||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA 46 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence 47899999999 999999999999999999999999998653
No 126
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.06 E-value=3.7e-06 Score=89.49 Aligned_cols=53 Identities=25% Similarity=0.290 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC--CCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA--SGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~--~G~--~i~a~~VI~ 332 (539)
.++.+.|.+.++..|++++++++|++|+.++ ++++++|++. +|+ .+.++.||+
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVl 186 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVL 186 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEE
Confidence 4788999999999999999999999998862 5778887653 343 368899884
No 127
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=81.53 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=37.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC--CCCcc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF--YGSHF 61 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~--~GG~~ 61 (539)
++.++||||||+||+||.||+.||.+|++|+++|+... +||.+
T Consensus 2 d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 2 DGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred CcccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 35679999999999999999999999999999998754 66654
No 128
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.06 E-value=4e-06 Score=87.69 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
||||||||++|+++|+.|++.|++|++||+++..||.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999999887764
No 129
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.05 E-value=4.5e-06 Score=87.13 Aligned_cols=59 Identities=32% Similarity=0.363 Sum_probs=45.9
Q ss_pred eEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
+.+|..|. ..+.+++++.+...| ..+..+++|..+..+ . +.++|.+.+|. ++|++||+.
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~-i~a~~vv~a 207 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGT-IEADKVVLA 207 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCcc-EEeCEEEEc
Confidence 55677774 478899999999999 456669999998754 3 66788887777 999999963
No 130
>PLN02985 squalene monooxygenase
Probab=98.04 E-value=5.5e-06 Score=89.59 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=35.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.....+||||||||++||++|.+|+++|++|+|+||...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 345678999999999999999999999999999999854
No 131
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.04 E-value=4.1e-06 Score=87.96 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=41.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+...+|+|||||.+||++|+.|.+.|++|+|+||.+.+||.|.--
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 345799999999999999999999999999999999999999864
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.04 E-value=4e-06 Score=88.30 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
.+-++|.+.++..|.+++.+++|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~a~~vVgAdG 165 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRS--GDD-WLLTLADGRQLRAPLVVAADG 165 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEc--CCe-EEEEECCCCEEEeCEEEEecC
Confidence 56677777777789999999999999765 333 45778899999999998 554
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.04 E-value=4.5e-06 Score=91.39 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=37.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..|||||||||.+||+||.+|++.|++|+++|++ .+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3599999999999999999999999999999996 68987653
No 134
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.04 E-value=4.3e-06 Score=83.23 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=33.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
...+||||||||.+|+++|++|+|.|+||+|+||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 45799999999999999999999999999999996
No 135
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.03 E-value=5.1e-06 Score=91.37 Aligned_cols=43 Identities=26% Similarity=0.436 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
..++||||||+|.+||+||+.++++|.+|+||||....||...
T Consensus 7 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 7 ELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 4579999999999999999999999999999999999999764
No 136
>PRK06834 hypothetical protein; Provisional
Probab=98.03 E-value=4.9e-06 Score=89.56 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=34.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
|+++||||||+|++||++|+.|++.|.+|+|+|+++.
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 5679999999999999999999999999999999875
No 137
>PLN02697 lycopene epsilon cyclase
Probab=98.03 E-value=6.5e-06 Score=88.75 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=35.3
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
.....|||||||+|++||++|++|++.|++|+++|+....+
T Consensus 104 ~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~ 144 (529)
T PLN02697 104 IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFT 144 (529)
T ss_pred cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCC
Confidence 33456999999999999999999999999999999864433
No 138
>PRK06185 hypothetical protein; Provisional
Probab=98.03 E-value=4.7e-06 Score=87.77 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..++||+|||||++|+++|+.|+++|.+|+++|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3569999999999999999999999999999999863
No 139
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.03 E-value=5.3e-06 Score=86.03 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
+||||||+|+.|+++|+.|+++|++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 6999999999999999999999999999999875
No 140
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.03 E-value=4.3e-06 Score=85.56 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=41.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
.-+|+|||||++|++||..|++.|++|.++||++.+||+.+.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 35899999999999999999999999999999999999987655
No 141
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.02 E-value=4.8e-06 Score=89.30 Aligned_cols=39 Identities=28% Similarity=0.526 Sum_probs=36.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
|||||||+|.+|+.||.+|++.|++|+++|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999976 788764
No 142
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=4.7e-06 Score=87.31 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC---CCeEEEeccC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASAS---GKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~---G~~VlvlE~~ 54 (539)
|..+||+|||||++||++|+.|+|+ |.+|+|+|++
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 4669999999999999999999998 9999999997
No 143
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.01 E-value=4.9e-06 Score=87.15 Aligned_cols=35 Identities=14% Similarity=0.234 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 37999999999999999999999999999999984
No 144
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=5.5e-06 Score=89.15 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+.+|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 34699999999999999999999999999999999999999864
No 145
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.00 E-value=7.6e-06 Score=93.21 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+..+|+|||+|.+|++||..|++.|++|+|+|+++.+||.++.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 45679999999999999999999999999999999999998754
No 146
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.99 E-value=6.3e-06 Score=91.21 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.+|||||||||+.|+.+|+.|+++|++|++||+++.-+|..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS 110 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence 45999999999999999999999999999999998776643
No 147
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.99 E-value=6.4e-06 Score=90.15 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+|++||..|+++|++|+|||++..+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 47899999999999999999999999999999999999965
No 148
>PRK07190 hypothetical protein; Provisional
Probab=97.98 E-value=6.6e-06 Score=88.54 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=35.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
...+||||||||++||++|+.|+++|.+|+||||++.+
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 34689999999999999999999999999999999875
No 149
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=6.9e-06 Score=82.39 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=37.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
+..|||||||+|.+||+||.+++|+|.++.+++.....||......
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 3579999999999999999999999999656666677887665544
No 150
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.97 E-value=8.8e-06 Score=88.93 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
+..+||+|||+|++||++|+.|++.|.+|+|+|+++.++...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ 49 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLP 49 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCC
Confidence 456899999999999999999999999999999998765433
No 151
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.97 E-value=6.1e-06 Score=86.07 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
..+.+.|.+.+.. .|++++++++|++|..+ ++. +.|++++|++++||.|| ++.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vV~AdG 159 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN--QDY-VRVTLDNGQQLRAKLLIAADG 159 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEeeEEEEecC
Confidence 4677888777777 49999999999999765 343 45777889899999988 454
No 152
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.97 E-value=7.4e-06 Score=86.43 Aligned_cols=44 Identities=23% Similarity=0.324 Sum_probs=41.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+.+||+||||+|.+|..||.++++.|++|+++|+...+||-|-.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 45799999999999999999999999999999999999998865
No 153
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.96 E-value=6.6e-06 Score=86.10 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=44.0
Q ss_pred CcchHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCcEEEEEeC-CCcEEEcCEEE-ECC
Q 009247 277 GQGELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRLA-SGQDILSHKLV-LDP 334 (539)
Q Consensus 277 G~geL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~~i~a~~VI-~~p 334 (539)
....|-++|.+.+...+ .+++.++.|+.+..+ ++.+. |+++ +|++++||.|| +|.
T Consensus 102 ~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~--~~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 102 PRSDLLNALLEAARALPNVTLRFGAEVEAVEQD--GDGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred EhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEc--CCceE-EEEcCCCcEEecCEEEECCC
Confidence 34677788878777776 699999999999886 45554 7778 99999999999 554
No 154
>PRK06847 hypothetical protein; Provisional
Probab=97.96 E-value=8.7e-06 Score=84.68 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=41.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
.++.+.|.+.+...|++++++++|++|..+ ++. +.|.+.+|+++.||.||.
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-~~v~~~~g~~~~ad~vI~ 157 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQD--DDG-VTVTFSDGTTGRYDLVVG 157 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEc--CCE-EEEEEcCCCEEEcCEEEE
Confidence 366777777777789999999999999765 444 457778999999999984
No 155
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.96 E-value=7e-06 Score=88.67 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
++.+.+.+..+..|.++++++.|++|... ++. ..|++.+|+++.+|.||+.
T Consensus 223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~--~~~-~~v~~~~g~~i~~D~vl~a 273 (499)
T PTZ00052 223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM--DDK-IKVLFSDGTTELFDTVLYA 273 (499)
T ss_pred HHHHHHHHHHHHcCCEEEcCCeEEEEEEc--CCe-EEEEECCCCEEEcCEEEEe
Confidence 56778888888899999999999998754 333 3577778999999999854
No 156
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=8.9e-06 Score=89.60 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 16 PPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 16 ~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.+|...++||||||+|.+||.||+.++++|.+|+||||+...||.+
T Consensus 6 ~~~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 6 TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred cCcccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 4566667999999999999999999999999999999998777744
No 157
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.95 E-value=7.2e-06 Score=85.41 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+||+|||||++|+++|..|++.|++|+|+|+++
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 799999999999999999999999999999975
No 158
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.94 E-value=8e-06 Score=89.77 Aligned_cols=41 Identities=22% Similarity=0.402 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|++||+||+.++++|.+|+||||.+..||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t 50 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST 50 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence 46899999999999999999999999999999999999853
No 159
>PRK06753 hypothetical protein; Provisional
Probab=97.94 E-value=7.8e-06 Score=85.01 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
.||+|||||++||++|..|+++|++|+|+|+++...
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 389999999999999999999999999999998753
No 160
>PRK06126 hypothetical protein; Provisional
Probab=97.94 E-value=8.6e-06 Score=89.21 Aligned_cols=38 Identities=8% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.+..+||+|||||++||++|+.|++.|++|+|+|+++.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 34568999999999999999999999999999999863
No 161
>PTZ00367 squalene epoxidase; Provisional
Probab=97.94 E-value=8.9e-06 Score=88.61 Aligned_cols=35 Identities=29% Similarity=0.567 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.++||||||||++|+++|.+|+++|++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46999999999999999999999999999999975
No 162
>PLN02507 glutathione reductase
Probab=97.93 E-value=9.2e-06 Score=87.72 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
.++.+.+.+..+..|.++++++.|++|..+ ++. +.|.+.+|+++.+|.||+.
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~--~~~-~~v~~~~g~~i~~D~vl~a 295 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKT--EGG-IKVITDHGEEFVADVVLFA 295 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCe-EEEEECCCcEEEcCEEEEe
Confidence 467777777788899999999999999754 343 3466778889999999864
No 163
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=9.1e-06 Score=89.47 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=37.3
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
|...||||||+|++||+||..++++|.+|+||||....||.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 34579999999999999999999999999999999987764
No 164
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.93 E-value=1e-05 Score=93.11 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=40.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+...+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 3467999999999999999999999999999999999999865
No 165
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=1.1e-05 Score=88.91 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=39.1
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
|...++||||||+|.+||.||..++++|.+|++|||....||.
T Consensus 3 ~~~~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 3 LPVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred CCccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4456799999999999999999999999999999999887774
No 166
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.92 E-value=8.5e-06 Score=85.42 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47999999999999999999999999999999974
No 167
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.92 E-value=8.7e-06 Score=86.60 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~~~~ 56 (539)
|||+|||||++||++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999654
No 168
>PRK12839 hypothetical protein; Provisional
Probab=97.92 E-value=1.2e-05 Score=88.23 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..++||||||+|.+|++||+.|+++|.+|++|||+..+||.+..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 35799999999999999999999999999999999999997653
No 169
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.91 E-value=1.4e-05 Score=85.19 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=40.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++.++|+|||+|.+||++|..|++.|++|+++|+++.+||.+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 34668999999999999999999999999999999999999764
No 170
>PRK07538 hypothetical protein; Provisional
Probab=97.91 E-value=9.5e-06 Score=85.67 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
+||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 48999999999999999999999999999998754
No 171
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.91 E-value=1.2e-05 Score=87.93 Aligned_cols=42 Identities=26% Similarity=0.552 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||..++++|.+|+||||+..+||.+.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 469999999999999999999999999999999999988643
No 172
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.90 E-value=1.5e-05 Score=85.03 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=41.8
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCcccc
Q 009247 16 PPIEPTAFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 16 ~~l~~~~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~~~~~GG~~~s 63 (539)
|+......+|+|||+|.+|+.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 3334456789999999999999999987 79999999999999998874
No 173
>PRK08244 hypothetical protein; Provisional
Probab=97.90 E-value=1e-05 Score=87.50 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
++||+|||||++||++|+.|++.|.+|+|+||++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 48999999999999999999999999999999865
No 174
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.2e-05 Score=89.10 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
..++||||||+|++||.||..++++|.+|+++||+...||.
T Consensus 6 ~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 6 RHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred ceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 34689999999999999999999999999999999876653
No 175
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.90 E-value=1.4e-05 Score=89.29 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..+|+|||+|.+||+||..|++.|++|+|+|+++.+||..+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999865
No 176
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.90 E-value=1.3e-05 Score=81.26 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
-+||||||||+||++|+.|+|.|++|+|+|++.-+=|.-.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~s 43 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTS 43 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCCcc
Confidence 58999999999999999999999999999998765443333
No 177
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.89 E-value=1e-05 Score=84.97 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
..+.+.|.+.+...|++++.+++|++|..+ ++. +.|++++|+++.||.||.
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~--~~~-v~v~~~~g~~~~ad~vI~ 161 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETR--DEG-VTVTLSDGSVLEARLLVA 161 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc--CCE-EEEEECCCCEEEeCEEEE
Confidence 467788877777889999999999999765 444 457778899999999984
No 178
>PRK11445 putative oxidoreductase; Provisional
Probab=97.89 E-value=1.1e-05 Score=83.27 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=32.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
.|||+|||+|++||++|+.|+++ ++|+++|+++..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 38999999999999999999999 999999999854
No 179
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.88 E-value=1.2e-05 Score=83.35 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=34.9
Q ss_pred cEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCc
Q 009247 24 DLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSH 60 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~ 60 (539)
||||||||++||++|.+|+++ |++|+++|+++..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999988774
No 180
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.88 E-value=1.3e-05 Score=87.48 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|++||.||..++++|.+|+|+||....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4689999999999999999999999999999999987774
No 181
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=1.4e-05 Score=87.71 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=37.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|++||.||..++++|.+|+|+||....||.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s 44 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHS 44 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcc
Confidence 46899999999999999999999999999999998777744
No 182
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.86 E-value=1.8e-05 Score=88.07 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=41.5
Q ss_pred CCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 17 PIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 17 ~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+..++..+|+|||+|.+||++|..|++.|++|+++|+++.+||.++
T Consensus 305 ~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 305 KVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred cccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 3444568999999999999999999999999999999999999875
No 183
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.86 E-value=1.4e-05 Score=85.89 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
.++.+.+.+..+..|.++++++.|++|..+ ++....|++.+|+++.+|.||+.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~--~~~~~~v~~~~g~~i~~D~vl~a 283 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLN--ADGSKHVTFESGKTLDVDVVMMA 283 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc--CCceEEEEEcCCCEEEcCEEEEe
Confidence 477888888888999999999999999754 23334577778889999999853
No 184
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.86 E-value=1.8e-05 Score=85.04 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...++|+|||+|.+|+++|..|++.|++|+++|+++++||...
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 3557999999999999999999999999999999999999754
No 185
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.86 E-value=1.2e-05 Score=86.28 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=45.4
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009247 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (539)
Q Consensus 270 ~~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~~ 333 (539)
+.+.|..|. ..+.++|.+.++..|++++++++|++|..+. ++. +.|++ .+|+ +++|++||+.
T Consensus 166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~-v~v~~~~~~~g~~~~i~A~~VV~A 235 (483)
T TIGR01320 166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGS-WTVTVKNTRTGGKRTLNTRFVFVG 235 (483)
T ss_pred EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCe-EEEEEeeccCCceEEEECCEEEEC
Confidence 355677773 6899999999999999999999999998651 333 23432 3343 6899999853
No 186
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.86 E-value=2e-05 Score=86.79 Aligned_cols=44 Identities=23% Similarity=0.414 Sum_probs=40.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..++||||||+|.+|+++|..++++|++|++|||++.+||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 34799999999999999999999999999999999999997653
No 187
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.85 E-value=1.4e-05 Score=85.82 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=37.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (539)
+.++||||||||+.|+++|+.|++. |++|+||||++.+|+..+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 4568999999999999999999984 899999999988766543
No 188
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.85 E-value=1.5e-05 Score=82.99 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=32.7
Q ss_pred cEEEECCChhHHHHHHHH--hhCCCeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAA--SASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~L--a~~G~~VlvlE~~~~~ 57 (539)
||||||||++||++|.+| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999999887
No 189
>PLN02546 glutathione reductase
Probab=97.85 E-value=1.6e-05 Score=86.72 Aligned_cols=43 Identities=28% Similarity=0.180 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccC---------CCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPN---------PFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~---------~~~GG~~~s 63 (539)
.+|||||||+|.+|..||..|++.|++|+++|++ ..+||.|-.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 3699999999999999999999999999999973 568887754
No 190
>PRK07588 hypothetical protein; Provisional
Probab=97.84 E-value=1.5e-05 Score=83.53 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.||+|||||++||++|..|++.|++|+|+|+++.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3899999999999999999999999999999864
No 191
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.83 E-value=1.8e-05 Score=87.57 Aligned_cols=59 Identities=15% Similarity=0.297 Sum_probs=45.6
Q ss_pred eecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 273 YPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 ~p~gG~-geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
+...+. ..|.+.|.+.+...|.+++.++.|++++.+ ++|++.||.. .+|+ .++|+.||+
T Consensus 159 ~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 223 (617)
T PTZ00139 159 AAADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMD-EDGECRGVIAMSMEDGSIHRFRAHYTVI 223 (617)
T ss_pred ecCCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEEC-CCCEEEEEEEEECCCCeEEEEECCcEEE
Confidence 333334 478899988888899999999999999874 2788988864 3564 578999985
No 192
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.83 E-value=1.9e-05 Score=91.67 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=39.8
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..+|+|||+|.+||+||.+|++.|++|+|+|+.+++||..+
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 3467999999999999999999999999999999999999765
No 193
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.83 E-value=1.8e-05 Score=87.29 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
..|.++|.+.+...|.+++.++.|++++.+ ++|+++||.. .+|+ .+.|+.||+
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 206 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMD-DGGVCRGVVAWNLDDGTLHRFRAHMVVL 206 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEE
Confidence 378899988888899999999999999876 2478999864 3665 578999985
No 194
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.83 E-value=1.6e-05 Score=85.95 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=35.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..|+|||||.+||++|..|.+.|.+|+++||++.+||.|+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 36999999999999999999999999999999999999974
No 195
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.83 E-value=2.1e-05 Score=89.30 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..+|+|||+|.+||+||.+|++.|++|+|+|+++.+||..+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 3567999999999999999999999999999999999999865
No 196
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.82 E-value=2e-05 Score=91.91 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=40.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..+||+|||||.+||+||.+|++.|++|+++|+++.+||....
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 4689999999999999999999999999999999999997754
No 197
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.82 E-value=1.8e-05 Score=84.01 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=43.2
Q ss_pred eecCCc-chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCcEEEEE-eCCCc--EEEcCEEEE
Q 009247 273 YPIYGQ-GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR-LASGQ--DILSHKLVL 332 (539)
Q Consensus 273 ~p~gG~-geL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~-l~~G~--~i~a~~VI~ 332 (539)
++.... .++.++|.+.++. .|.+++++++|+.|..+ +++++||. ..+|+ +++|+.||+
T Consensus 121 ~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~--~~~v~Gv~~~~~g~~~~i~Ak~VIL 183 (433)
T PRK06175 121 HFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEN--DNTCIGAICLKDNKQINIYSKVTIL 183 (433)
T ss_pred ecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEec--CCEEEEEEEEECCcEEEEEcCeEEE
Confidence 444444 3688888877764 59999999999999876 67888865 33554 589999985
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.81 E-value=2e-05 Score=85.63 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...|||+|||||.+|++||.+|++.|++|+++|++ +||.+.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCeee
Confidence 44699999999999999999999999999999874 999875
No 199
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=2.7e-05 Score=85.64 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||..++++|++|+||||++..||.+.
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 368999999999999999999999999999999999999765
No 200
>PRK02106 choline dehydrogenase; Validated
Probab=97.80 E-value=2.1e-05 Score=86.38 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPF 56 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~~~~ 56 (539)
..+||+||||+|.+|+++|..||+ +|++|+|||+.+.
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 356999999999999999999999 8999999999864
No 201
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.80 E-value=2.2e-05 Score=81.50 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
.||+|||||++|+.||+.|++.|++|+++|+++...-
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5999999999999999999999999999999876544
No 202
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.79 E-value=2.2e-05 Score=84.64 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=37.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
|||||||+|.+|+++|+.|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 699999999999999999999999999999999999866
No 203
>PRK05868 hypothetical protein; Validated
Probab=97.78 E-value=2.3e-05 Score=81.49 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 48999999999999999999999999999998764
No 204
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.78 E-value=2.2e-05 Score=87.01 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||.. .+|+ .+.|+.||+
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVIL 244 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMD-SDGACQGVIALNMEDGTLHRFRAHSTIL 244 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEc-CCCEEEEEEEEEcCCCeEEEEEcCeEEE
Confidence 378899988888889999999999998875 2578888864 3564 578999995
No 205
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.78 E-value=3.3e-05 Score=82.70 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=39.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
....+|+|||+|.+|+.+|..|++.|++|+++|+++++||...
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 3457999999999999999999999999999999999999754
No 206
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.77 E-value=2.4e-05 Score=85.46 Aligned_cols=41 Identities=22% Similarity=0.309 Sum_probs=36.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
..++||||||+|++||+||..++ .|.+|+|+||.+..||..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSAS 47 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCch
Confidence 45689999999999999999986 599999999999888753
No 207
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=2e-05 Score=86.63 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=46.0
Q ss_pred EeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 272 ~~p~gG~-geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
.++..++ ..|.++|.+.+...|.+++.++.|.+|..+ +|++.||.. .+|+ .++|+.||+
T Consensus 127 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~AkaVVl 191 (575)
T PRK05945 127 CYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRLILE--DNQAKGVVMYHIADGRLEVVRAKAVMF 191 (575)
T ss_pred EecCCCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEE--CCEEEEEEEEEcCCCeEEEEECCEEEE
Confidence 3444433 478899988888899999999999999876 788888753 4565 589999995
No 208
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.77 E-value=2.3e-05 Score=87.05 Aligned_cols=40 Identities=28% Similarity=0.298 Sum_probs=36.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|++||.||..++++|.+|+|+||+..+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g 73 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA 73 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence 3689999999999999999999999999999999888754
No 209
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.76 E-value=0.00057 Score=70.79 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred EeecCCc----chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCcEEEEEe---C--CCcEEEcCEEEECC
Q 009247 272 IYPIYGQ----GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRL---A--SGQDILSHKLVLDP 334 (539)
Q Consensus 272 ~~p~gG~----geL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~--~G~~i~a~~VI~~p 334 (539)
.+...|+ |+|.+.|.+.+... |..+++++.|+.|.... +|+ +.|++ . +..+++|+.|++++
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~-W~v~~~~~~~~~~~~v~a~FVfvGA 240 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGR-WEVKVKDLKTGEKREVRAKFVFVGA 240 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCC-EEEEEEecCCCCeEEEECCEEEECC
Confidence 4566774 79999999888877 99999999999998863 553 34543 2 23468999998753
No 210
>PRK10262 thioredoxin reductase; Provisional
Probab=97.76 E-value=2.6e-05 Score=79.46 Aligned_cols=42 Identities=12% Similarity=0.198 Sum_probs=37.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..+||+|||+|.+||.||..|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 67887643
No 211
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.76 E-value=2.4e-05 Score=81.58 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=35.0
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
||+|||||++|+.||.+|++.|++|+++|+++..|-..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~ 39 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPA 39 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCch
Confidence 79999999999999999999999999999998876533
No 212
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.75 E-value=2.7e-05 Score=86.66 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
..|..+|.+.+...|.+++.++.|.+|+.+ +|+++||.. .+|+ .+.|+.||+
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~--~g~v~Gv~~~~~~~G~~~~i~AkaVVL 214 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD--GKRCYGAVVRCLITGELRAYVAKATLI 214 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCeEEE
Confidence 477788888888899999999999999986 788888765 3565 368999885
No 213
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.74 E-value=2.7e-05 Score=85.64 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
.|.++|.+.+...|.+++.++.|++|..+ +|+++||.. .+|+ .++|+.||+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~--~g~v~Gv~~~~~~~g~~~~i~Ak~VVl 185 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD--DGRVRGVVAYDLKTGEIVFFRAKAVVL 185 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEe--CCEEEEEEEEECCCCcEEEEECCeEEE
Confidence 68888888888889999999999999886 788888764 3565 579999985
No 214
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.74 E-value=2.8e-05 Score=81.74 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
-+|+|||||++||++|.+|+++|++|+|+|+++..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999998754
No 215
>PLN02815 L-aspartate oxidase
Probab=97.73 E-value=3.7e-05 Score=84.48 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=36.7
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|++||.||+.+++.| +|+||||....||..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 3589999999999999999999999 899999999988843
No 216
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.73 E-value=4.2e-05 Score=82.01 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=40.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+..+|+|||+|.+|+++|..|++.|++|+++|+++.+||..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 3567999999999999999999999999999999999999764
No 217
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=3.1e-05 Score=85.31 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASG---KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+||.||..++++| .+|+++||....||.+
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s 47 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS 47 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence 4689999999999999999999998 8999999999877743
No 218
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.73 E-value=3.2e-05 Score=85.57 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=38.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccC-CCCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPN-PFYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~-~~~GG~~~s 63 (539)
+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 699999999999999999999999999999984 479997643
No 219
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.73 E-value=3e-05 Score=86.04 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=38.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhh-CCCeEEEeccCCCC--CCcccccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASA-SGKSVLHLDPNPFY--GSHFSSLS 65 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~-~G~~VlvlE~~~~~--GG~~~s~~ 65 (539)
+.++||+|||||++||++|+.|++ .|.+|+|+|+++.. .|+.-.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~ 78 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIA 78 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEC
Confidence 567999999999999999999999 59999999998643 45544333
No 220
>PRK06996 hypothetical protein; Provisional
Probab=97.72 E-value=3.1e-05 Score=81.32 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCC----CeEEEeccCCC
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASG----KSVLHLDPNPF 56 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G----~~VlvlE~~~~ 56 (539)
+.+..+||+|||||++|+++|+.|+++| ++|+++|+.+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 5556799999999999999999999997 47999999864
No 221
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.71 E-value=2.9e-05 Score=76.00 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcE--EEcCEEEE-CCCCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQD--ILSHKLVL-DPSFT 337 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~--i~a~~VI~-~p~~~ 337 (539)
.+-++|.+.....||.++.+-+|.+.... +|++..|-+.++.. ++|+.+|. +.++.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~--~~~v~~i~trn~~diP~~a~~~VLAsGsff 317 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK--GGRVTEIYTRNHADIPLRADFYVLASGSFF 317 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeee--CCeEEEEEecccccCCCChhHeeeeccccc
Confidence 67788999999999999999999999887 78888888887765 58888774 55554
No 222
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.71 E-value=3.4e-05 Score=83.21 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCcEEEEEeCC-C--cEEEcCEEEE
Q 009247 279 GELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVRLAS-G--QDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G--~~i~a~~VI~ 332 (539)
..|.++|.+.+.. .|.+++.++.|++|..+ +++++||.+.+ + ..++|+.||+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~--~g~v~Gv~~~~~~~~~~i~A~~VVl 183 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIE--TGRVVGVWVWNRETVETCHADAVVL 183 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeecc--CCEEEEEEEEECCcEEEEEcCEEEE
Confidence 4788999888877 68999999999999876 67788876543 3 3689999985
No 223
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.71 E-value=4e-05 Score=90.73 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=39.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.++||||||+|.+|++||+.++++|.+|+||||.+..||...
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 469999999999999999999999999999999999999753
No 224
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.71 E-value=3.5e-05 Score=81.40 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=33.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~GG 59 (539)
+|+|||||++||++|..|+++| .+|+|+||++.++.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~ 38 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE 38 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC
Confidence 6999999999999999999998 59999999987654
No 225
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.70 E-value=3.4e-05 Score=84.93 Aligned_cols=36 Identities=25% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
....+|+|||||++||++|.+|++.|++|+|+||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 356899999999999999999999999999999975
No 226
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.69 E-value=3.8e-05 Score=82.16 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (539)
..+||||||||+.|+++|+.|++. |++|+||||.+.+|-..+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS 48 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESS 48 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcC
Confidence 457999999999999999999999 999999999777776544
No 227
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.69 E-value=4.1e-05 Score=83.12 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=37.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...|||+|||||.+|++||.+|++.|++|+++|. ++||.+.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4469999999999999999999999999999985 5899775
No 228
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.68 E-value=4.7e-05 Score=84.92 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=39.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...+|+|||+|.+||++|..|++.|++|+++|+++++||.+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 457999999999999999999999999999999999999874
No 229
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.68 E-value=3.9e-05 Score=83.14 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|.+||.||..+++ |.+|+++||.+..||.+
T Consensus 2 ~~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 2 PSADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS 41 (510)
T ss_pred CccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence 36899999999999999999976 99999999999888753
No 230
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.67 E-value=4.2e-05 Score=84.57 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG 59 (539)
.++||||||+|.+||.||+.++++ |.+|+++||+...|+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s 50 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRS 50 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCC
Confidence 468999999999999999999998 999999999987544
No 231
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.66 E-value=3.4e-05 Score=79.28 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
.+.+.+.+.++.....-+....|+.|..+ +++++||++.+|+.+.|+.||+
T Consensus 96 ~y~~~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~~~a~~vVl 146 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEEIEADAVVL 146 (392)
T ss_dssp HHHHHHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEEEEECEEEE
T ss_pred HHHHHHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCEEecCEEEE
Confidence 34455555556666666678889998887 7888899998898899998885
No 232
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.65 E-value=4.8e-05 Score=81.85 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=37.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC--------CCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP--------FYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~--------~~GG~~~s 63 (539)
+|||||||+|.+|+.||..+++.|++|+++|+.. .+||.|-.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n 51 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN 51 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence 5899999999999999999999999999999742 58887643
No 233
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.64 E-value=5.1e-05 Score=79.69 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc--EEEcCEEEE
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ--DILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~--~i~a~~VI~ 332 (539)
++.+.|.+.++..|+++++++.|.++..+ ++++..|...+|+ .++||.||+
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~--~~~V~~v~~~~g~~~~i~AD~VVL 312 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFE--GGRVTAVWTRNHGDIPLRARHFVL 312 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEeeCCceEEEECCEEEE
Confidence 79999999999999999999999999876 5666666555554 489999885
No 234
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.62 E-value=5.2e-05 Score=82.94 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=41.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
.++.+.|.+.+...|.++++++.|+++..+ ++++++||.. .+|+ .++|+.||+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~-~~~~v~Gv~~~~~~~g~~~~i~AkaVIl 191 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVD-ENREVIGAIFLDLRNGEIFPIYAKATIL 191 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEe-CCcEEEEEEEEECCCCcEEEEEcCcEEE
Confidence 478888888787889999999999999886 2344888753 4565 489999995
No 235
>PRK08275 putative oxidoreductase; Provisional
Probab=97.61 E-value=5.6e-05 Score=82.85 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
.++.+.|.+.++..|.+++.++.|++|+.++ +++++||.. .+|+ .++|+.||+
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIl 194 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVIL 194 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEE
Confidence 4788899888888999999999999998752 577888863 3565 478999885
No 236
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.61 E-value=5.2e-05 Score=74.50 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=37.1
Q ss_pred CcccEEEECCChhHHHHHHHHhh----CCCeEEEeccCCCCCCcccccch
Q 009247 21 TAFDLIVIGTGLPESVISAAASA----SGKSVLHLDPNPFYGSHFSSLSI 66 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~----~G~~VlvlE~~~~~GG~~~s~~~ 66 (539)
.++||+|||+|..|++.|..|.+ .|.+|+|+|+++.|--...-++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSv 134 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSV 134 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeee
Confidence 47999999999999999998854 47999999999987444443333
No 237
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.60 E-value=5.7e-05 Score=83.11 Aligned_cols=41 Identities=22% Similarity=0.152 Sum_probs=36.2
Q ss_pred CcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (539)
.++||||||+|++||.||..++++ |.+|+|+||....||.+
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s 45 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT 45 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence 358999999999999999999987 47999999998887744
No 238
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.59 E-value=8.6e-05 Score=79.94 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...+|+|||+|++|+.+|..|++.|++|+++|+.+++||...
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 346999999999999999999999999999999999999764
No 239
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.58 E-value=4e-05 Score=80.52 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=48.6
Q ss_pred EeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCCCCC
Q 009247 272 IYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFTVPG 340 (539)
Q Consensus 272 ~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-~p~~~~~~ 340 (539)
.||... ..++.+.|.+.++..|.++++++.|++|..+ ++ .+.|++ +++++.||.||+ .....++.
T Consensus 97 ~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~--~~-~~~v~~-~~~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 97 VFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD--DN-GFGVET-SGGEYEADKVILATGGLSYPQ 163 (400)
T ss_pred eECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec--CC-eEEEEE-CCcEEEcCEEEECCCCcccCC
Confidence 466554 5789999999999999999999999999654 33 356776 577899999985 34333343
No 240
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.57 E-value=6.9e-05 Score=80.36 Aligned_cols=50 Identities=18% Similarity=0.199 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
..+.+.|.+.+...|.+++.+ .|+.+..+ ++++++|.. +|+.++|+.||+
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~--~g~v~Gv~~-~g~~i~a~~VVL 169 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIK--NGKAYGVFL-DGELLKFDATVI 169 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEee--CCEEEEEEE-CCEEEEeCeEEE
Confidence 478899999888899998865 78888765 678888876 677899999985
No 241
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.57 E-value=7.6e-05 Score=81.01 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=40.6
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
+...++||||||+|.+||.||..++.+|.+|+++||....||+..
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~ 46 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV 46 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence 345679999999999999999999999999999999999986654
No 242
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.55 E-value=7e-05 Score=82.27 Aligned_cols=40 Identities=25% Similarity=0.175 Sum_probs=36.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCcc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~ 61 (539)
++||||||+|++||.||..++++ |.+|+++||....||.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 58999999999999999999987 57999999999888844
No 243
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.54 E-value=8.4e-05 Score=81.90 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCC---CcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNS---GSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~---g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
..|.+.|.+.+...|.+++.++.|++|+.++ + |+++||.. .+|+ .++|+.||+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 200 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTE-TPSGPVAAGVVAYELATGEIHVFHAKAVVF 200 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecC-CccCCcEEEEEEEEcCCCeEEEEEeCeEEE
Confidence 4788999888888999999999999998762 2 78888864 3565 478999985
No 244
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.53 E-value=8.2e-05 Score=81.17 Aligned_cols=40 Identities=18% Similarity=0.338 Sum_probs=36.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
+.++||||||+|++||.||..+++. .+|+++||....||.
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 3468999999999999999999986 899999999988874
No 245
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=8.5e-05 Score=79.53 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=35.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||+|.+|++||.+|++.|++|+++|++. +||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~-~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-LGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc-ccccCCC
Confidence 79999999999999999999999999999975 7776643
No 246
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00011 Score=81.70 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=45.5
Q ss_pred cCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 10 LPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 10 ~~~~~~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
|=.| -|++..+-..|.|||+|.+||.||..|-|+|+.|+|+||.+++||....
T Consensus 1774 wm~p-~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1774 WMKP-CPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred CCcc-CCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence 4333 3445567789999999999999999999999999999999999998764
No 247
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.48 E-value=0.00012 Score=68.85 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
||||||+|.+|+.||..|++.|++|+++|+++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 799999999999999999999999999987764
No 248
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.48 E-value=0.00019 Score=57.00 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
.|+|||+|+.|+-+|..|++.|++|+++++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999988
No 249
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.46 E-value=9.5e-05 Score=80.52 Aligned_cols=35 Identities=34% Similarity=0.597 Sum_probs=33.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
..+||+||||+|.+|+++|..|+..|++|++||+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 35799999999999999999999999999999996
No 250
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.46 E-value=0.00015 Score=74.78 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
..+|+|||+|.+|+.+|..|++.|++|+++|+.+++||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 36899999999999999999999999999999999999764
No 251
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.45 E-value=0.00018 Score=79.08 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
...+|+|||+|.+||++|..|++.|++|+++|+++.+||..+
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 346899999999999999999999999999999999999764
No 252
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.43 E-value=0.00019 Score=81.19 Aligned_cols=41 Identities=24% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.+...|+|||+|.+||+||.+|++.|++|+++|+.+..|+.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 45689999999999999999999999999999998877665
No 253
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.42 E-value=0.00018 Score=76.13 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=41.0
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+...|.|||+|.+||.||..|+++|+.|+++|+.+..||+...
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 34578999999999999999999999999999999999999875
No 254
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.38 E-value=0.00018 Score=77.93 Aligned_cols=38 Identities=34% Similarity=0.330 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
|||||||+|++|+.+|..+++.|++|+++|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 79999999999999999999999999999998554443
No 255
>PRK07846 mycothione reductase; Reviewed
Probab=97.37 E-value=0.00017 Score=77.02 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~ 64 (539)
+|||||||+|.+|..||.+ ..|++|+++|+ +.+||.|-.+
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~-~~~GGtC~n~ 40 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEK-GTFGGTCLNV 40 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCcccCc
Confidence 4899999999999988766 46999999998 4688877543
No 256
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.36 E-value=0.00017 Score=77.01 Aligned_cols=39 Identities=26% Similarity=0.440 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
+|||||||+|.+|..||++ .+|++|+++|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5999999999999988654 46999999998 578998754
No 257
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.35 E-value=0.0002 Score=78.86 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHh----hCCCeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAAS----ASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La----~~G~~VlvlE~~~~~ 57 (539)
||||||+|.+||.||+.++ ++|.+|+++||....
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence 8999999999999999998 789999999999873
No 258
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.35 E-value=0.00018 Score=72.64 Aligned_cols=57 Identities=14% Similarity=0.229 Sum_probs=44.7
Q ss_pred CcccEEEECCChhHHHHHHHHhh----C--CCeEEEeccCCCCCCcccccc------hhhh-hhhhhcCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASA----S--GKSVLHLDPNPFYGSHFSSLS------IADL-THFLNSHS 77 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~----~--G~~VlvlE~~~~~GG~~~s~~------~~~~-~~~~~~~~ 77 (539)
+.+||+|||+|.+||+||.+|.+ + -.+|.|+||...+||..-|-. ++++ +.|-.+..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~a 144 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGA 144 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCC
Confidence 36999999999999999998854 2 458999999999999987644 3333 56766653
No 259
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.34 E-value=0.00016 Score=78.38 Aligned_cols=52 Identities=21% Similarity=0.252 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHc-CcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVK-GCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~-Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~a~~VI~ 332 (539)
..+.++|.+.+... |.+++.++.|.+|..+ +++++||...+ ++ .++|+.||+
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~--~g~v~Gv~~~~~~~~~~i~Ak~VVL 191 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVD--DGAVAGVLAATAGGPVVLPARAVVL 191 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeec--CCEEEEEEEEeCCeEEEEECCEEEE
Confidence 47889998877765 8999999999999776 68888887533 33 589999985
No 260
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.33 E-value=0.00017 Score=78.72 Aligned_cols=33 Identities=36% Similarity=0.449 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~ 56 (539)
|+||||+|.+|+++|.+||++| ++|+|||+...
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 8999999999999999999998 69999999864
No 261
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.31 E-value=0.0003 Score=74.34 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=37.9
Q ss_pred cccEEEECCChhHHHHHHHH-hhCCCeEEEeccCCCCCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAA-SASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~L-a~~G~~VlvlE~~~~~GG~~~s 63 (539)
...|+|||+|.+|+.||.+| ++.|++|.++|+.+.+||..+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 45799999999999999976 4679999999999999999875
No 262
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.30 E-value=0.00023 Score=71.17 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=40.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
.+|||+|||+|.+|-.||...++.|.+...+|+|..+||.|-.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 4699999999999999999999999999999999999998754
No 263
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.30 E-value=0.00019 Score=79.25 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=33.3
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
|||||+|.+||.||..++++|.+|+||||+..+||.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~g 36 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRRA 36 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCCc
Confidence 799999999999999999999999999999976644
No 264
>PRK13984 putative oxidoreductase; Provisional
Probab=97.29 E-value=0.0003 Score=78.10 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
....+|+|||+|.+|+++|..|++.|++|+++|++++.||...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 3557899999999999999999999999999999999999764
No 265
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.29 E-value=0.00027 Score=75.86 Aligned_cols=52 Identities=13% Similarity=0.151 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
.++.+.+.+..+..|.++++++.|++|..+ ++.+ .|.+.+|+++.+|.||+.
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~--~~~~-~v~~~~g~~l~~D~vl~a 269 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERT--GDGV-VVTLTDGRTVEGSHALMA 269 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEe--CCEE-EEEECCCcEEEecEEEEe
Confidence 467777778888899999999999999754 3443 466778999999998864
No 266
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.28 E-value=0.00026 Score=69.00 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=45.2
Q ss_pred CCCCCccccCCCCCC-CCCCCcccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCC
Q 009247 2 TGNESESELPVPPYP-PIEPTAFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGS 59 (539)
Q Consensus 2 ~~~~~~~~~~~~~~~-~l~~~~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG 59 (539)
|.|.++-.+|..... +.+-..||.||||+|+.||+.|..|.-. +.+|.|||+....+=
T Consensus 27 ~~~~~t~~R~i~gg~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~ 87 (453)
T KOG2665|consen 27 TWNLITIKRGISGGAESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV 87 (453)
T ss_pred CccccceeccccCCccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence 345555566665443 3456789999999999999999999877 999999999876543
No 267
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.28 E-value=0.00023 Score=80.86 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~ 57 (539)
++|+|||||++||++|..|++. |++|+|+|+++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 3799999999999999999998 8999999999863
No 268
>PLN02785 Protein HOTHEAD
Probab=97.26 E-value=0.00031 Score=77.12 Aligned_cols=35 Identities=34% Similarity=0.477 Sum_probs=32.3
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..||+||||+|.+|+++|..|++ +++|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46999999999999999999999 699999999764
No 269
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.25 E-value=0.00032 Score=81.16 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=34.1
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.++||||||+|.+||.||..++++|.+|+++||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 468999999999999999999999999999999985
No 270
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.20 E-value=0.00033 Score=72.92 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCC--cEEEcCEEEE-CCCC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG--QDILSHKLVL-DPSF 336 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G--~~i~a~~VI~-~p~~ 336 (539)
..|.++|.+.++..||+++.++.|.++..+ ++++++|.+.++ .+++||+||+ ...+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~--~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE--GNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEee--CCeEEEEEecCCccceEECCEEEEccCCC
Confidence 478899999999999999999999999876 677888887676 4799999885 4444
No 271
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.00049 Score=72.22 Aligned_cols=35 Identities=37% Similarity=0.519 Sum_probs=31.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
+..|||||||||++|+-||++.||-|.+++++=-|
T Consensus 2 ~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 2 PKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 45699999999999999999999999999998665
No 272
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.89 E-value=0.00078 Score=71.88 Aligned_cols=54 Identities=22% Similarity=0.332 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEE-ECC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLV-LDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI-~~p 334 (539)
..+-+-|.+.+...|++++.++ |..+..+. +|.+++|++.+|++++||.|| ++.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG 208 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDE-DGRITAVRLDDGRTIEADFFIDASG 208 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCC
Confidence 5677888888999999998875 88887774 788889999999999999999 543
No 273
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.85 E-value=0.0012 Score=64.77 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=36.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
-|||||+||+||+|+-.+-..|-.|++||++...||...
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 699999999999999999999989999999999999864
No 274
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.81 E-value=0.014 Score=58.64 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=37.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCcccc
Q 009247 21 TAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s 63 (539)
.+..+-|||+||+||++|..|-|. |+++.++|--+..||..-.
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG 67 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDG 67 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCC
Confidence 346799999999999999999764 7899999999999997643
No 275
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.72 E-value=0.0015 Score=67.94 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
||+|||+|++||++|+.|++. ++|+|+=|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999999 999999998764
No 276
>PRK09897 hypothetical protein; Provisional
Probab=96.69 E-value=0.0018 Score=70.15 Aligned_cols=38 Identities=11% Similarity=0.078 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCCCCC-Cc
Q 009247 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNPFYG-SH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~~~~~G-G~ 60 (539)
++|+|||+|.+|+.+|..|.+.+. +|+|+|++..+| |.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ 42 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM 42 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence 589999999999999999988654 899999999999 65
No 277
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.67 E-value=0.002 Score=67.60 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~ 335 (539)
++.+.+.+.++..|.++++++.|++|.. ++. +.|++.+|+++.||.||+...
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~-~~v~l~~g~~i~aD~Vv~a~G 238 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD---GEK-VELTLQSGETLQADVVIYGIG 238 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc---CCE-EEEEECCCCEEECCEEEECCC
Confidence 5556677777889999999999999853 223 457788999999999997543
No 278
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.64 E-value=0.0024 Score=68.61 Aligned_cols=39 Identities=31% Similarity=0.374 Sum_probs=34.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC-CCeEEEeccCCCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASAS-GKSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~~~~~ 57 (539)
....||.||||||-+|+++|++|++. -.+||+||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 34679999999999999999999997 7899999997655
No 279
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.56 E-value=0.0021 Score=68.45 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p 334 (539)
.++.+.+.+.++..|.+++++++|++|.. ++++..|.+ +++++.||.||+..
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~-~~~~i~~d~vi~a~ 242 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG---EDKVEGVVT-DKGEYEADVVIVAT 242 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec---CCcEEEEEe-CCCEEEcCEEEECc
Confidence 46778888888899999999999999843 344555654 55679999998643
No 280
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0029 Score=65.24 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=31.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
..+.|||||||||++|+-||++.||-|-+.++|-.|
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 356799999999999999999999999988887654
No 281
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.44 E-value=0.0035 Score=66.44 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~ 335 (539)
++.+.+.+..+..|.++++++.|++|.. + .|.+++|+++.+|.||..+.
T Consensus 229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~----~---~v~~~~g~~i~~d~vi~~~G 277 (424)
T PTZ00318 229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD----K---EVVLKDGEVIPTGLVVWSTG 277 (424)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeEEEEeC----C---EEEECCCCEEEccEEEEccC
Confidence 5677777888999999999999999842 2 36678999999999986543
No 282
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0027 Score=62.64 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=31.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 53 (539)
.+||.||||+|-+||+||-..++-|++|.+||-
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 469999999999999999999999999999985
No 283
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.35 E-value=0.0036 Score=65.54 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=38.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~ 62 (539)
.+|+|||+|..|+.+|..|++.|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 6999999999999999999999999999999999999875
No 284
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0036 Score=61.68 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=35.3
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
..-|.|||+||+|+-||..++++|.+|.++|.++.=+--+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 3468999999999999999999999999999998766443
No 285
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.22 E-value=0.0016 Score=60.08 Aligned_cols=41 Identities=12% Similarity=0.147 Sum_probs=36.4
Q ss_pred cccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCccc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (539)
+-||||||+|-+||+||+..+++ ..+|.++|+.-.+||-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 46999999999999999999955 689999999999988653
No 286
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.20 E-value=0.0051 Score=65.49 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=39.1
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDP 334 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p 334 (539)
.++.+.+.+..+..|.++++++.|++|. .. .|++++|+++.+|.||+..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~----~~---~v~~~~g~~~~~D~vl~a~ 237 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN----GN---EVTFKSGKVEHYDMIIEGV 237 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe----CC---EEEECCCCEEEeCEEEECc
Confidence 3677778888888999999999999983 22 3566788899999998643
No 287
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.10 E-value=0.0063 Score=61.84 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPF 56 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~ 56 (539)
+...|||||+|||+.|++.|+.|..+ -+||++||..+.
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 33479999999999999999999864 579999999843
No 288
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.98 E-value=0.01 Score=59.09 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=40.6
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccc
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s 63 (539)
..+||..|||+|-+|+.+|++.+..|.+|.++|..-.+||-|-.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 35799999999999999999999999999999999999998753
No 289
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.95 E-value=0.0078 Score=55.97 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=27.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||.|..||.+|+.||++|++|+-+|.+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 589999999999999999999999999999864
No 290
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=95.76 E-value=0.031 Score=56.84 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=49.7
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
+++|..|. ..+.+++.+.+...|++++.+++|+.|..+ ++++++|.+.+| +++||+||+
T Consensus 126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~--~~~~~~v~~~~g-~~~a~~vV~ 187 (337)
T TIGR02352 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR--GEKVTAIVTPSG-DVQADQVVL 187 (337)
T ss_pred EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee--CCEEEEEEcCCC-EEECCEEEE
Confidence 55677773 689999999999999999999999999876 677778887666 799999885
No 291
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.45 E-value=0.0096 Score=57.75 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=37.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCC------CeEEEeccCCCCCCccc
Q 009247 23 FDLIVIGTGLPESVISAAASASG------KSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G------~~VlvlE~~~~~GG~~~ 62 (539)
..++|||+|+.|..+|++|++.+ ..|+++|+....||...
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG 56 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG 56 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence 67999999999999999999999 89999999999998754
No 292
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.40 E-value=0.018 Score=52.02 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.1
Q ss_pred EEECCChhHHHHHHHHhhC-----CCeEEEeccCCC
Q 009247 26 IVIGTGLPESVISAAASAS-----GKSVLHLDPNPF 56 (539)
Q Consensus 26 iIIGaGl~Gl~aA~~La~~-----G~~VlvlE~~~~ 56 (539)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999988 568999999776
No 293
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.35 E-value=0.018 Score=59.68 Aligned_cols=49 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~ 335 (539)
++.+.+.+.++..|.++++++.|++|. .+ +|.+.+|+++.+|.||+.+.
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g~~i~~D~vi~a~G 240 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADGRTLPADAILWATG 240 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCCCEEecCEEEEccC
Confidence 566777788889999999999999873 22 46678899999999997544
No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.27 E-value=0.022 Score=59.18 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~a~~VI~ 332 (539)
-++.+...+..+..|.+++++++|++|.. + +|++.+|+ +|.|+.||-
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~---~----~v~~~~g~~~I~~~tvvW 256 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP---D----GVTLKDGEEEIPADTVVW 256 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC---C----cEEEccCCeeEecCEEEE
Confidence 46677777888999999999999999853 2 46677888 499999994
No 295
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.26 E-value=0.01 Score=62.28 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
+|||+|||||-.|.=||.-.+-+|.+|.++|++|+--|-.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred cccEEEECCCccCcceeehhhcccceeEEEecccccCCcc
Confidence 5999999999999999999999999999999999876644
No 296
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.23 E-value=0.023 Score=52.56 Aligned_cols=33 Identities=30% Similarity=0.341 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..++++|++|.++|.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 389999999999999999999999999999754
No 297
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.99 E-value=0.072 Score=55.20 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=51.1
Q ss_pred ecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009247 274 PIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 274 p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~ 336 (539)
|.-|+ -.+.+.+.+.+..+|++|++++.|..|.+. ++.+.+|++++|.+|.||+||+.|-.
T Consensus 165 rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~--~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 165 RHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIE--DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec--CCceEEEEccCCcEEecCEEEEccCc
Confidence 34454 467788888889999999999999999987 66678899999999999999987654
No 298
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=94.90 E-value=0.03 Score=58.81 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=35.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.++.
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~ 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence 469999999999999999999999999999999887653
No 299
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.87 E-value=0.032 Score=50.41 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 38999999999999999999999999999986
No 300
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.62 E-value=0.045 Score=55.45 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=33.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
++....|.|||+|.-|...|.+|+++|++|+++.++.
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3445679999999999999999999999999998864
No 301
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.051 Score=54.91 Aligned_cols=43 Identities=9% Similarity=-0.019 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHHHHhh--CCCeEEEeccCCCCCCccccc
Q 009247 22 AFDLIVIGTGLPESVISAAASA--SGKSVLHLDPNPFYGSHFSSL 64 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~--~G~~VlvlE~~~~~GG~~~s~ 64 (539)
...|.|||+|.+|..+|..|-+ .+..|.++|+.+.++|..+.-
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 4589999999999999998887 479999999999999998763
No 302
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.025 Score=56.31 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
..|||+|||+|.+|-+||.|.||.|.+.=++ .++.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence 4599999999999999999999999987664 35688865
No 303
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.39 E-value=0.041 Score=55.62 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
+|.|||+|+.|...|..|+++|++|+++|++..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 699999999999999999999999999999864
No 304
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.063 Score=57.90 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
....|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 345799999999999999999999999999998864
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.26 E-value=0.055 Score=56.35 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.+|+|||+|..|+-+|..|++.|++|+++|+.+++...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~ 179 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS 179 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch
Confidence 47999999999999999999999999999999887543
No 306
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.26 E-value=0.055 Score=56.61 Aligned_cols=40 Identities=25% Similarity=0.511 Sum_probs=35.0
Q ss_pred ccEEEECCChhHHHHHHHHhhC----CCeEEEeccCCCCCCcccc
Q 009247 23 FDLIVIGTGLPESVISAAASAS----GKSVLHLDPNPFYGSHFSS 63 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~----G~~VlvlE~~~~~GG~~~s 63 (539)
++|+|||+|.+|+..|..|.+. ++ |.++|+++..|+-...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~GiaY 45 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGIAY 45 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCccC
Confidence 7899999999999999999875 34 9999999999886653
No 307
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.20 E-value=0.059 Score=56.14 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~ 335 (539)
++.+.+.+.++..|.+++++++|++|..+ ++. +.|++.+|+++.||.||+...
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~--~~~-~~v~~~~g~~i~~D~vI~a~G 236 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT--DSG-IRATLDSGRSIEVDAVIAAAG 236 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEcc--CCE-EEEEEcCCcEEECCEEEECcC
Confidence 56667777788899999999999999754 333 457788999999999996543
No 308
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=94.20 E-value=0.24 Score=51.19 Aligned_cols=111 Identities=20% Similarity=0.190 Sum_probs=69.1
Q ss_pred cCCcHHHHHHhcCCChhHHHHHHHHHhcccCCchhhhhhhcchhHHHHHHHHHHhhccccCCCcceEeecCCcchHHHHH
Q 009247 206 LDSPFAEFLTKMKLPHKIKSIVLYAIAMADYDQEVSEYVLKTRDGINRLALYNSSIGRFQNALGALIYPIYGQGELPQAF 285 (539)
Q Consensus 206 ~~~s~~~~l~~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~s~~~~l~~~~~~~~s~g~~g~~~~~~~~p~gG~geL~qal 285 (539)
...++.+||++.++++.+.+-+..+....+|.++. . +..+.-.+...+ ...| .+-.+||...|++.|
T Consensus 68 t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~---~------i~a~~G~vSla~---a~~g-l~sV~GGN~qI~~~l 134 (368)
T PF07156_consen 68 TKVTGEEYLKENGISERFINELVQAATRVNYGQNV---N------IHAFAGLVSLAG---ATGG-LWSVEGGNWQIFEGL 134 (368)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc---c------hhhhhhheeeee---ccCC-ceEecCCHHHHHHHH
Confidence 45788999999999998887677676667776631 1 222222222222 1123 457899999999977
Q ss_pred HHHHHHcCcEEEeCCceeEEEEecCCCc-EEEEEeCC--CcE-EEcCEEEEC
Q 009247 286 CRRAAVKGCLYVLRMPVISLLTDQNSGS-YKGVRLAS--GQD-ILSHKLVLD 333 (539)
Q Consensus 286 ~r~~a~~Gg~~~L~~~V~~I~~~~~~g~-~~gV~l~~--G~~-i~a~~VI~~ 333 (539)
.+ .-|+++ ++++|++|.....++. ...|...+ +.. -..|.||+.
T Consensus 135 l~---~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIA 182 (368)
T PF07156_consen 135 LE---ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIA 182 (368)
T ss_pred HH---HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEEC
Confidence 65 568899 9999999933222333 23344332 222 235999864
No 309
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.18 E-value=0.034 Score=57.04 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=27.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~ 56 (539)
.+|+|+||.|..+|++|++|...+ .+++.||+++.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 489999999999999999999887 99999999864
No 310
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.17 E-value=0.065 Score=47.78 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=29.2
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
|+|+|+|-.|+..|++|+++|++|.++.++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999874
No 311
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.92 E-value=0.063 Score=57.52 Aligned_cols=34 Identities=26% Similarity=0.132 Sum_probs=31.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
.|.|||.|.+|+++|..|++.|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 3899999999999999999999999999998775
No 312
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.87 E-value=0.13 Score=53.61 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=49.7
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE-CCCCC
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL-DPSFT 337 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~-~p~~~ 337 (539)
+++|..|. ..+.++|.+.+.. |++++.+++|.+|..+ +++ ++|++.+|+.++|++||. ...+.
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~--~~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD--GEG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc--CCe-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 55777774 6888999888888 9999999999999865 444 568888888899999885 34343
No 313
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.85 E-value=0.079 Score=56.39 Aligned_cols=38 Identities=21% Similarity=0.102 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 46999999999999999999999999999999987554
No 314
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=93.81 E-value=0.069 Score=57.43 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~ 217 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILP 217 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCC
Confidence 4799999999999999999999999999999987643
No 315
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.80 E-value=0.066 Score=56.46 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=31.9
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
...|.|||.|..|+..|+.|+++|++|.++|++..
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 35699999999999999999999999999998764
No 316
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.60 E-value=0.081 Score=56.65 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
.+|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 5799999999999999999999999999999988754
No 317
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.58 E-value=0.086 Score=52.72 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|||+|..|...|..|+++|++|.++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 359999999999999999999999999999875
No 318
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.48 E-value=0.075 Score=53.17 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..|+++|++|+++|+++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 489999999999999999999999999999864
No 319
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.39 E-value=0.083 Score=53.97 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+.+.|||+|..||+.|+.||+.|++|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 368999999999999999999999999999875
No 320
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.37 E-value=0.098 Score=60.15 Aligned_cols=55 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPS 335 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~ 335 (539)
++.+.+.+..+..|.++++++.|++|..+. .+....|.+.+|+++.+|.||+.+.
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTG 242 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCC
Confidence 455667778889999999999999996531 2345568888999999999996543
No 321
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.28 E-value=0.096 Score=56.19 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 204 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR 204 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc
Confidence 57999999999999999999999999999999877543
No 322
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.11 Score=55.41 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+....|+|+|+|..|+.+|..|++.|++|+++|++.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 345679999999999999999999999999999976
No 323
>PRK06370 mercuric reductase; Validated
Probab=93.28 E-value=0.11 Score=55.83 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=35.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 57999999999999999999999999999999987654
No 324
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.15 E-value=0.1 Score=50.20 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.++|||+|--|...|..|++.|+.|+++|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 689999999999999999999999999999853
No 325
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.12 E-value=0.13 Score=51.62 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999874
No 326
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.05 E-value=0.11 Score=55.49 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|++|+++|+.+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~ 203 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 4799999999999999999999999999999988753
No 327
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.00 E-value=0.11 Score=55.31 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=34.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 4699999999999999999999999999999988764
No 328
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.97 E-value=0.12 Score=55.69 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~ 212 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA 212 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc
Confidence 47999999999999999999999999999999987543
No 329
>PRK04148 hypothetical protein; Provisional
Probab=92.97 E-value=0.092 Score=45.76 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..+++||.| .|...|..|++.|++|+.+|.++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 469999999 888889999999999999999987
No 330
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.96 E-value=0.12 Score=55.47 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 210 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG 210 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc
Confidence 46999999999999999999999999999999887543
No 331
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.94 E-value=0.11 Score=52.58 Aligned_cols=33 Identities=36% Similarity=0.424 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..++++|++|+++|.++.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 599999999999999999999999999999863
No 332
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=92.92 E-value=0.12 Score=55.30 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 4799999999999999999999999999999987654
No 333
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.85 E-value=0.13 Score=55.28 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=34.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 5799999999999999999999999999999988754
No 334
>PRK07846 mycothione reductase; Reviewed
Probab=92.85 E-value=0.13 Score=55.05 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=33.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 579999999999999999999999999999998775
No 335
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.79 E-value=0.13 Score=55.29 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~ 209 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP 209 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4799999999999999999999999999999887644
No 336
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=92.79 E-value=0.14 Score=54.95 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999998765
No 337
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.76 E-value=0.14 Score=51.23 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
.|.|||+|..|.-.|..|+++|++|+++|.++.-
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 6999999999999999999999999999998654
No 338
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.70 E-value=0.42 Score=50.11 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
|||+|||+|++|+++|..|+++|++|+++|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 699999999999999999999999999999875
No 339
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=92.64 E-value=0.14 Score=54.36 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~ 173 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL 173 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC
Confidence 479999999999999999999999999999998773
No 340
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=92.59 E-value=0.16 Score=54.47 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=34.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
..|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 213 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF 213 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc
Confidence 57999999999999999999999999999999987653
No 341
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.56 E-value=0.12 Score=59.20 Aligned_cols=54 Identities=13% Similarity=0.290 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEECCCC
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLDPSF 336 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~p~~ 336 (539)
++.+.+.+..+..|.++++++.|++|.. +++..+|++++|+++.+|.||+.+..
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCCC
Confidence 4455566777889999999999999864 34566788899999999999975443
No 342
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.51 E-value=0.14 Score=51.39 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|-.|...|..|+++|++|.+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 48999999999999999999999999999853
No 343
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.51 E-value=0.14 Score=51.04 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..|+++|++|+++|.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence 599999999999999999999999999998754
No 344
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=92.48 E-value=0.7 Score=47.89 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=49.6
Q ss_pred eEeecCC-cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-cEEEcCEEEE-CCCCCCCC
Q 009247 271 LIYPIYG-QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-QDILSHKLVL-DPSFTVPG 340 (539)
Q Consensus 271 ~~~p~gG-~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-~~i~a~~VI~-~p~~~~~~ 340 (539)
.+||.-. ..++.++|.+.++..|.+++++++|++| + +++ ..|++.++ ++++||+||+ .....+|.
T Consensus 77 rvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~--~~~-~~v~~~~~~~~~~a~~vIlAtGG~s~p~ 144 (376)
T TIGR03862 77 RVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q--GGT-LRFETPDGQSTIEADAVVLALGGASWSQ 144 (376)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e--CCc-EEEEECCCceEEecCEEEEcCCCccccc
Confidence 4799766 7899999999999999999999999998 3 333 46776443 5699999985 33333344
No 345
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.41 E-value=0.14 Score=51.39 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|...|..|+++|++|.++|+++.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 599999999999999999999999999999863
No 346
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.20 E-value=0.15 Score=58.30 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|+.|+-+|..|++.|.+|+++|+.+++-.
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~ 177 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA 177 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh
Confidence 4699999999999999999999999999999887643
No 347
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.18 E-value=0.18 Score=51.03 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~ 55 (539)
.|.|||+|..|+++|..|++.| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5999999999999999999999 5899999875
No 348
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=92.17 E-value=0.19 Score=54.14 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=34.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 221 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA 221 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc
Confidence 47999999999999999999999999999999987543
No 349
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.10 E-value=0.12 Score=51.00 Aligned_cols=43 Identities=26% Similarity=0.407 Sum_probs=38.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC--------CCCCCcccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN--------PFYGSHFSSLS 65 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~--------~~~GG~~~s~~ 65 (539)
-+|+|||+|..|.-+|....--|-+|+++|.| +.+||+..+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~ 219 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLY 219 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEE
Confidence 57999999999999999999999999999999 67888877654
No 350
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.07 E-value=0.42 Score=52.02 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=47.1
Q ss_pred eEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC---CCc--EEEcCEEEE
Q 009247 271 LIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA---SGQ--DILSHKLVL 332 (539)
Q Consensus 271 ~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~---~G~--~i~a~~VI~ 332 (539)
+.+| .|. ..+..++.+.+..+|++++.+++|++|..+ ++++++|++. +|+ +|+|++||.
T Consensus 118 ~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~--~~~v~gv~v~~~~~g~~~~i~a~~VVn 184 (516)
T TIGR03377 118 VKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIRE--GGRVTGVKVEDHKTGEEERIEAQVVIN 184 (516)
T ss_pred EEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE--CCEEEEEEEEEcCCCcEEEEEcCEEEE
Confidence 5667 453 478899999999999999999999999876 6777777753 353 689999884
No 351
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.00 E-value=0.16 Score=53.67 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||.|..|+..|..|+++|++|+++|++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 589999999999999999999999999999764
No 352
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.00 E-value=0.18 Score=50.88 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+.|.|||+|-.|...|++|+++|.+|.++.+..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999999963
No 353
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=91.95 E-value=0.24 Score=53.24 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~ 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGE 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCC
Confidence 369999999999999999999999999999998876653
No 354
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=91.95 E-value=0.19 Score=53.73 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
..++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 4799999999999999999999999999999988754
No 355
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.82 E-value=0.19 Score=50.62 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 53 (539)
.|.|||+|..|+..|..|+++|++|.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 356
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.80 E-value=0.18 Score=54.81 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
..|+|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~ 388 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELK 388 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCC
Confidence 479999999999999999999999999999988764
No 357
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.78 E-value=0.27 Score=44.84 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=30.7
Q ss_pred CcccEEEECCCh-hHHHHHHHHhhCCCeEEEeccC
Q 009247 21 TAFDLIVIGTGL-PESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 21 ~~~DViIIGaGl-~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
....|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 457899999995 6999999999999999999986
No 358
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.62 E-value=0.18 Score=51.62 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|||+|..|+..|..|+++|++|.+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 369999999999999999999999999999853
No 359
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=91.54 E-value=0.23 Score=52.92 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
..|+|||+|..|+-+|..|++.|++|.++++.+++.+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 186 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP 186 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence 4799999999999999999999999999999887644
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.49 E-value=0.21 Score=53.29 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
-.|||||+|..|+-+|..|++.|.+|++++++++
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999999865
No 361
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.48 E-value=0.25 Score=49.84 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 56 (539)
..|.|||+|..|+..|+.|+..|+ +|.++|.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 369999999999999999999887 8999998433
No 362
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=91.44 E-value=0.49 Score=44.15 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEEC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVLD 333 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~~ 333 (539)
.++.+-|.+.++.+|..+++++.|++|..+ +++ +.|++.+|++++|++||+.
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~--~~~-w~v~~~~~~~~~a~~VVlA 133 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRD--GDG-WTVTTRDGRTIRADRVVLA 133 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEE--TTT-EEEEETTS-EEEEEEEEE-
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEe--ccE-EEEEEEecceeeeeeEEEe
Confidence 467777788888899899999999999887 444 6799989989999999953
No 363
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.39 E-value=0.22 Score=50.41 Aligned_cols=32 Identities=31% Similarity=0.379 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|..|...|..|+++|++|+++|++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 59999999999999999999999999999865
No 364
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=91.36 E-value=0.45 Score=50.16 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
||||||+|++||+||+.++++|.+|+||||.+.+||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 899999999999999999999999999999999999
No 365
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.35 E-value=0.26 Score=52.97 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=39.5
Q ss_pred ccCCCCCCCCCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 9 ELPVPPYPPIEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 9 ~~~~~~~~~l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.+|....+.+.+.. |.|+|.|-+|.++|..|.+.|.+|.+.|++.
T Consensus 4 ~~~~~~~~~~~~~~--v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 4 LVPLSALPQELSGR--VLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred cChhhhcccccCCe--EEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 56777888877664 9999999999999999999999999999764
No 366
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.32 E-value=0.25 Score=49.54 Aligned_cols=32 Identities=38% Similarity=0.504 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|..|...|..|+++|++|.++|++.
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999876
No 367
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.30 E-value=0.22 Score=57.32 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=33.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
.++|||+|+.|+-+|..|++.|.+|+|+|+.+++-.
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~ 182 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMA 182 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchh
Confidence 689999999999999999999999999999987543
No 368
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=91.24 E-value=0.25 Score=52.76 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++..
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 203 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR 203 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc
Confidence 4699999999999999999999999999999887643
No 369
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.21 E-value=0.23 Score=49.40 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||.|+-|...|..|+++|++|.+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999864
No 370
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=91.19 E-value=0.26 Score=52.36 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=35.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
-.++|||+|..|+-.|-.+++-|.+|+++|+++++--..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~ 212 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGE 212 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcC
Confidence 359999999999999999999999999999999986533
No 371
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=91.17 E-value=13 Score=38.46 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
..+-+.+.+.++ .++++++++.|++|..+ ++ .+.|++++|++++|+.||-
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~--~~-~~~v~~~~g~~i~a~~VvD 136 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEET--GD-GVLVVLADGRTIRARVVVD 136 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEec--Cc-eEEEEECCCCEEEeeEEEE
Confidence 456666667666 77889999999999765 33 3457789999999999883
No 372
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.17 E-value=0.25 Score=55.10 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=34.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 3699999999999999999999999999999998765
No 373
>PTZ00058 glutathione reductase; Provisional
Probab=91.13 E-value=0.24 Score=54.36 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~ 274 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR 274 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc
Confidence 4799999999999999999999999999999988653
No 374
>PRK10262 thioredoxin reductase; Provisional
Probab=91.11 E-value=0.27 Score=49.91 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
-.|+|||+|..|+-+|..|++.|++|+++++++..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 47999999999999999999999999999998865
No 375
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.85 E-value=0.26 Score=52.77 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~ 56 (539)
+.|.|||+|..|+.+|+.||++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 3599999999999999999998 588999997653
No 376
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=90.81 E-value=0.27 Score=53.60 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=32.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
-+|+|||+|.+|+-+|..|+..|++|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 47999999999999999999999999999998876
No 377
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.79 E-value=0.26 Score=54.13 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
-.|+|||+|..|+-+|..|++.|++|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998865
No 378
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.72 E-value=0.34 Score=44.21 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|+|+|+|-.|.-||..|..-|.+|.++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 579999999999999999999999999999863
No 379
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.67 E-value=0.31 Score=49.48 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|..|+..|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999874
No 380
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.62 E-value=0.36 Score=49.25 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|||+|--|...|..|+++|++|.+++++.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 469999999999999999999999999999964
No 381
>PLN02507 glutathione reductase
Probab=90.55 E-value=0.31 Score=52.83 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-.|..|++.|.+|+++++.+++-
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l 239 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL 239 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC
Confidence 479999999999999999999999999999988753
No 382
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.53 E-value=0.34 Score=48.92 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999875
No 383
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.52 E-value=0.36 Score=50.18 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=33.9
Q ss_pred CCCCCcccEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 17 PIEPTAFDLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 17 ~l~~~~~DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
++++....|.||| .|+-|...|..|+++|+.|.++++++
T Consensus 93 ~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 93 TLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 3444556799999 89999999999999999999999875
No 384
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=90.48 E-value=0.38 Score=51.26 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~ 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence 47999999999999999999999999999998877543
No 385
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.47 E-value=0.29 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|.+ |+++++++.
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 3699999999999999999999997 999998765
No 386
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=90.45 E-value=0.71 Score=49.90 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=45.2
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcC-cEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEEC
Q 009247 270 ALIYPIYGQ---GELPQAFCRRAAVKG-CLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVLD 333 (539)
Q Consensus 270 ~~~~p~gG~---geL~qal~r~~a~~G-g~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~~ 333 (539)
+.+.|.+|. +.+.++|.+.++..| ++++++++|++|..+. ++.+ .|++ .+|+ +++|++||+.
T Consensus 171 Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~-~v~~~~~~~G~~~~i~A~~VVva 241 (494)
T PRK05257 171 ATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSW-TVTVKDLKTGEKRTVRAKFVFIG 241 (494)
T ss_pred EEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCE-EEEEEEcCCCceEEEEcCEEEEC
Confidence 455677762 689999999988887 5999999999998752 4433 3433 3464 6899998853
No 387
>PRK06116 glutathione reductase; Validated
Probab=90.39 E-value=0.34 Score=51.78 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l 203 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL 203 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc
Confidence 579999999999999999999999999999988764
No 388
>PRK12831 putative oxidoreductase; Provisional
Probab=90.36 E-value=0.31 Score=52.26 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 4799999999999999999999999999998764
No 389
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.3 Score=45.95 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=35.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEecc---CCC-CCCcccc
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDP---NPF-YGSHFSS 63 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~---~~~-~GG~~~s 63 (539)
.-.|+|||+|.++-+||.+++|+-.|-+++|- |+. +||...|
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT 53 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT 53 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee
Confidence 34899999999999999999999999999994 343 4776554
No 390
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.26 E-value=0.35 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCC-CeEEEeccC
Q 009247 23 FDLIVIGTGLPESVISAAASASG-KSVLHLDPN 54 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~ 54 (539)
.+|+|||+|-.|+.+|..|+++| .+|++.+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 47999999999999999999999 999999997
No 391
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.24 E-value=0.39 Score=43.31 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=31.4
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEecc
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDP 53 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~ 53 (539)
+.+...|+|||||-.|+.-|..|.+.|.+|+|+.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 45667899999999999999999999999999953
No 392
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.21 E-value=0.41 Score=43.44 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=28.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|-|||.|..|...|..|.++|++|.++|++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 368999999999999999999999999999874
No 393
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=90.12 E-value=0.35 Score=48.09 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
..|+|||+|.+|+-+|..|++.|++|+++++.+.+
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCccc
Confidence 47999999999999999999999999999998755
No 394
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.00 E-value=0.34 Score=50.58 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=28.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 48999999999999988885 999999998764
No 395
>PRK13748 putative mercuric reductase; Provisional
Probab=89.99 E-value=0.38 Score=52.96 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|++|++++++..
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 304 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL 304 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4699999999999999999999999999998653
No 396
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.97 E-value=0.47 Score=40.04 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=28.8
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
|||||.|-.|..+|..|.+.|.+|+++|++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999999854
No 397
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=89.96 E-value=0.91 Score=48.95 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=35.7
Q ss_pred ccEEEECCChhHHHHHHHHhhC--CCeEEEeccCCCCCCccc
Q 009247 23 FDLIVIGTGLPESVISAAASAS--GKSVLHLDPNPFYGSHFS 62 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~--G~~VlvlE~~~~~GG~~~ 62 (539)
+||||||||+.|+++|+.|++. |++|+||||.+.+|...+
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S 42 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESS 42 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhC
Confidence 6999999999999999999997 999999999887764433
No 398
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=89.91 E-value=0.42 Score=45.11 Aligned_cols=36 Identities=11% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
+.....|+|||||=.|...|..|.++|.+|+|+++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 445578999999999999999999999999999763
No 399
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.88 E-value=0.41 Score=45.24 Aligned_cols=36 Identities=11% Similarity=0.068 Sum_probs=32.2
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.....|+|||+|-.|...+..|.+.|.+|+|++.+.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 344579999999999999999999999999998864
No 400
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.67 E-value=0.27 Score=40.85 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=32.0
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+.+...|+|||+|-.+..-+..|.+.|.+|+|+-+..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3456789999999999999999999999999999885
No 401
>PLN02546 glutathione reductase
Probab=89.65 E-value=0.4 Score=52.55 Aligned_cols=37 Identities=8% Similarity=-0.029 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG 59 (539)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999887654
No 402
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.63 E-value=0.43 Score=45.59 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=29.0
Q ss_pred cEEEEC-CChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIG-TGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIG-aGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.||| +|.-|.+.|..|+++|++|.+++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 89999999999999999999998764
No 403
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.61 E-value=0.41 Score=48.71 Aligned_cols=32 Identities=25% Similarity=0.249 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999864
No 404
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.59 E-value=0.69 Score=48.42 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=39.4
Q ss_pred CccccCCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 6 SESELPVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 6 ~~~~~~~~~~~~l~~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.+++.+..++.+.+....-|+|+|+ |..|..++..|.++|++|..+.++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 44 ATAAAAAQSFRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCccccccccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3334444456666666678999996 9999999999999999999998864
No 405
>PRK14694 putative mercuric reductase; Provisional
Probab=89.57 E-value=0.45 Score=51.11 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
-.|+|||+|..|+-.|..|++.|.+|+++++....
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l 213 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL 213 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 46999999999999999999999999999975433
No 406
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=89.52 E-value=0.4 Score=42.09 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
++|+|+|..+..+|..++.-|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999999954
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.32 E-value=0.45 Score=49.40 Aligned_cols=33 Identities=30% Similarity=0.347 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.+|+|||+|-.|+.+|..|.+.|.+|.++|++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 569999999999999999999999999999874
No 408
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.09 E-value=0.74 Score=43.32 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+.....|+|+|.|-.|..+|..|.+.|.+|++.|++.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3444579999999999999999999999999999873
No 409
>PRK14727 putative mercuric reductase; Provisional
Probab=88.89 E-value=0.55 Score=50.62 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
-.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 469999999999999999999999999999754
No 410
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.86 E-value=0.43 Score=51.61 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 59999999999999999999999999999874
No 411
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.86 E-value=0.61 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=30.0
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 54 (539)
...|+|||+|--|+.+|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999998 59998876
No 412
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.79 E-value=0.51 Score=48.48 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~ 57 (539)
++..+|+|.||-|..-|.+|++|+..+ .+++.|||.+.+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 456799999999999999999999875 889999999864
No 413
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=88.79 E-value=0.42 Score=45.00 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=32.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
...|.|||+|+.|+=.|-..+.+|+.|.++|++.-
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 35799999999999999999999999999999864
No 414
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.78 E-value=0.6 Score=45.96 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 55 (539)
...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457999999999999999999999 7899999764
No 415
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=88.75 E-value=1.4 Score=48.77 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~a-~~VI~ 332 (539)
..|.++|.+.+...|++|+++++|++|+.+ ++++++|+.. +++ +++| +.||+
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~--~g~v~GV~~~~~~~~~~i~a~k~VVl 272 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRE--DGRVAGAVVETPGGLQEIRARKGVVL 272 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEEEEEEEEECCcEEEEEeCCEEEE
Confidence 468899999999999999999999999876 6888888653 233 4788 87885
No 416
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.60 E-value=0.45 Score=51.45 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=30.8
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.|.|||+|..|.-.|..|+++|++|.++|++..
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 499999999999999999999999999998854
No 417
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=88.45 E-value=0.46 Score=41.16 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=29.5
Q ss_pred CCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 19 EPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 19 ~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
......|.|||+|=.|-.+|.+|.++|+.|.-+..++
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3456789999999999999999999999998877654
No 418
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.38 E-value=1.9 Score=45.26 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred ceEeecCCc---chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCC-----cEEEcCEEEE
Q 009247 270 ALIYPIYGQ---GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG-----QDILSHKLVL 332 (539)
Q Consensus 270 ~~~~p~gG~---geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G-----~~i~a~~VI~ 332 (539)
++++|..|. ..+.++|.+.+...|++++.+++|++|..+ ++.+ .|.+.++ .+++|++||.
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~--~~~~-~v~~~~~~~~~~~~i~a~~vV~ 252 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTD--GGGV-VLTVQPSAEHPSRTLEFDGVVV 252 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe--CCEE-EEEEEcCCCCccceEecCEEEE
Confidence 355676654 356788889999999999999999999765 4443 3433332 3799999885
No 419
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.35 E-value=0.6 Score=47.14 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHHHHhhCC--CeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASG--KSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G--~~VlvlE~~~~ 56 (539)
.|+|||+|..|.++|..|+..| .+|.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4899999999999999999999 58999999753
No 420
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.19 E-value=0.77 Score=40.20 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~ 54 (539)
...|+|||+|=+|-.++.+|+..|.+ |.++-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46799999999999999999999987 9999876
No 421
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=88.19 E-value=0.48 Score=47.00 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhC-CC-eEEEeccCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASAS-GK-SVLHLDPNP 55 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~-G~-~VlvlE~~~ 55 (539)
..++.|+|||+|-+|+..|+.+.+. |. +|-++|..+
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 4689999999999999999999886 54 788898765
No 422
>PTZ00052 thioredoxin reductase; Provisional
Probab=88.15 E-value=0.63 Score=50.41 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
+++|||+|..|+-.|..|++.|.+|++++++
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 7999999999999999999999999999975
No 423
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.06 E-value=0.59 Score=50.09 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|+|.|.+|..+|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999876
No 424
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.03 E-value=0.58 Score=50.07 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 56 (539)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 579999999999999999999998 8999998764
No 425
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=88.02 E-value=0.29 Score=48.01 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=22.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGK 46 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~ 46 (539)
...+++|||+|..||+.|..+++.+.
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~ 27 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYH 27 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhh
Confidence 34689999999999999999988664
No 426
>PRK07121 hypothetical protein; Validated
Probab=87.95 E-value=1.4 Score=47.74 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=43.4
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEc-CEEEE
Q 009247 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILS-HKLVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~a-~~VI~ 332 (539)
...+.+.|.+.++..|++|+++++|++|..+. +|+++||+.. +|+ .++| +.||+
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVl 233 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVL 233 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEE
Confidence 45789999999999999999999999998762 5788888763 333 4788 88885
No 427
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=87.93 E-value=1.8 Score=44.96 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=25.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEe
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHL 51 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~Vlvl 51 (539)
||||||||++|+.||+++||.|.+|+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEE
Confidence 8999999999999999999999999999
No 428
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.89 E-value=0.57 Score=46.82 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=29.4
Q ss_pred EEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 25 LIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
|.|||.|..|...|..|++.|++|.+++++.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 7899999999999999999999999999874
No 429
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.81 E-value=0.95 Score=48.23 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009247 11 PVPPYPPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 11 ~~~~~~~l~~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
|..|..+-.-....|+|.|| |+.|..++.+|+++|++|.++|+.
T Consensus 36 ~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 36 PSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 44443333333456999996 999999999999999999999853
No 430
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=87.81 E-value=0.57 Score=50.57 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
-.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 36999999999999999999999999999974
No 431
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=87.71 E-value=0.92 Score=47.11 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCCCcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 16 PPIEPTAFDLIVIGT-GLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 16 ~~l~~~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+.+......|+|.|+ |..|..++.+|.+.|++|+.++++.
T Consensus 15 ~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 15 PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 334445678999998 9999999999999999999999753
No 432
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.69 E-value=0.81 Score=48.79 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
..|+|+|.|-+|+.+|..|++.|++|.+.|.++..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 46999999999999999999999999999987653
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.52 E-value=0.66 Score=50.29 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
-.|.|||+|..|.-.|..|+++|+.|.++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999998865
No 434
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.48 E-value=0.63 Score=46.84 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009247 25 LIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 55 (539)
|.|||+|..|..+|..|+..|. +|.++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999984
No 435
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.44 E-value=0.54 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++++|++|.++|.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3599999999999999999999999999999853
No 436
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=87.31 E-value=1.7 Score=46.48 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHhhCC---CeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASG---KSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G---~~VlvlE~~~~~ 57 (539)
||||||+|.+|.++|++|++.+ .+|++||+.+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999999 899999998653
No 437
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=87.28 E-value=1.8 Score=47.85 Aligned_cols=52 Identities=25% Similarity=0.267 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCC-Cc--EEEc-CEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLAS-GQ--DILS-HKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~-G~--~i~a-~~VI~ 332 (539)
..|.++|.+.++..|++++++++|++++.+ ++++++|+..+ |+ ++.| +.||+
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~--~g~V~GV~~~~~g~~~~i~A~~~VVl 276 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETD--HGRVIGATVVQGGVRRRIRARGGVVL 276 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEee--CCEEEEEEEecCCeEEEEEccceEEE
Confidence 378899999999999999999999999876 78899987643 33 4676 56875
No 438
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.28 E-value=0.66 Score=48.98 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
...|.|+|-|.+|+++|..|.+.|.+|.+.|.++..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 457999999999999999999999999999988776
No 439
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=87.27 E-value=2.3 Score=46.87 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=46.5
Q ss_pred eecCCcc-hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 273 YPIYGQG-ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 273 ~p~gG~g-eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
++..++| .|.++|.+.+...|.+++.++.|++++++ +|+++||.. .+|+ .|+|+.||+
T Consensus 112 ~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~--~g~v~Ga~~~~~~~g~~~~i~AkaVIL 175 (565)
T TIGR01816 112 AAADRTGHAILHTLYQQNLKADTSFFNEYFALDLLME--DGECRGVIAYCLETGEIHRFRAKAVVL 175 (565)
T ss_pred ecCCCchHHHHHHHHHHHHhCCCEEEeccEEEEEEee--CCEEEEEEEEEcCCCcEEEEEeCeEEE
Confidence 4444444 79999988888899999999999999886 789999864 3565 478999995
No 440
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=87.25 E-value=0.67 Score=46.54 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999999999874
No 441
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=87.17 E-value=0.72 Score=49.75 Aligned_cols=37 Identities=14% Similarity=0.122 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHh---hCCCeEEEeccCCCCCC
Q 009247 23 FDLIVIGTGLPESVISAAAS---ASGKSVLHLDPNPFYGS 59 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La---~~G~~VlvlE~~~~~GG 59 (539)
-.|+|||+|..|+-.|..++ +.|.+|+++|+++++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~ 227 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR 227 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc
Confidence 46999999999999996554 45999999999998754
No 442
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.10 E-value=0.69 Score=49.70 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999998755
No 443
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.99 E-value=0.83 Score=48.67 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..|+|+|+|-.|.++|..|++.|++|.+.|++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~ 39 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPF 39 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCc
Confidence 4589999999999999999999999999998753
No 444
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=86.83 E-value=2.1 Score=46.20 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred cceEeecCC---cchHHHHHHHHHHH-cCcEEEeCCceeEEEEecCCCcEEEEE---eCCCc--EEEcCEEEEC
Q 009247 269 GALIYPIYG---QGELPQAFCRRAAV-KGCLYVLRMPVISLLTDQNSGSYKGVR---LASGQ--DILSHKLVLD 333 (539)
Q Consensus 269 ~~~~~p~gG---~geL~qal~r~~a~-~Gg~~~L~~~V~~I~~~~~~g~~~gV~---l~~G~--~i~a~~VI~~ 333 (539)
++.+.|.+| .+.|.++|++.+.. .|++++++++|+.|..+. ++. +.|+ +.+|+ +++||.||+.
T Consensus 171 ~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~-d~~-w~v~v~~t~~g~~~~i~Ad~VV~A 242 (497)
T PRK13339 171 AASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLS-DGG-WEVTVKDRNTGEKREQVADYVFIG 242 (497)
T ss_pred eEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECC-CCC-EEEEEEecCCCceEEEEcCEEEEC
Confidence 345567666 26899999998864 589999999999997642 333 3343 34453 6899999853
No 445
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.80 E-value=0.86 Score=45.96 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~ 56 (539)
..|.|||+|..|...|..|+..|. .|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 479999999999999999999876 9999999654
No 446
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=86.77 E-value=2.1 Score=46.54 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe--CCCc--EEEcCEEEE
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL--ASGQ--DILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l--~~G~--~i~a~~VI~ 332 (539)
.+.+.|.+.++..|.+++++++|++|..+ ++++++|++ .+|+ +++|+.||+
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~--~g~V~Gv~~~~~~g~~~~i~a~~VVl 245 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEK--DGKVTGVKVKINGKETKTISSKAVVV 245 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEec--CCEEEEEEEEeCCCeEEEEecCeEEE
Confidence 68899999999999999999999999765 678888765 3333 589999985
No 447
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.72 E-value=0.71 Score=52.20 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++++|++|.++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4599999999999999999999999999999853
No 448
>PLN02256 arogenate dehydrogenase
Probab=86.67 E-value=0.93 Score=45.67 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.8
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
....|.|||.|..|...|..|++.|++|.+++++.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 44679999999999999999999999999999885
No 449
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=86.65 E-value=0.85 Score=48.30 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHHHHhh--------------CCCeEEEeccCCCCCC
Q 009247 24 DLIVIGTGLPESVISAAASA--------------SGKSVLHLDPNPFYGS 59 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~--------------~G~~VlvlE~~~~~GG 59 (539)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999999875 5899999999987754
No 450
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.56 E-value=0.79 Score=49.51 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|+|+|.|.+|++++..|.+.|.+|++.|.+.
T Consensus 14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 59999999999999999999999999999763
No 451
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.48 E-value=0.92 Score=48.41 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=33.7
Q ss_pred CCCCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 18 IEPTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 18 l~~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
|+.++--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus 2 ~~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 2 LMQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred ccccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 45555669999999999999999999999999999876
No 452
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=86.42 E-value=2.5 Score=44.12 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=35.1
Q ss_pred CCcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCC
Q 009247 20 PTAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFY 57 (539)
Q Consensus 20 ~~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~ 57 (539)
...+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 45689999999999999999999999999999999753
No 453
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=86.38 E-value=0.77 Score=46.00 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
..|.|||+|.-|.-.|..++.+|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999999
No 454
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=86.29 E-value=2.6 Score=44.55 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
+|||||||+|++|+++|..|+++|++|+++|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4899999999999999999999999999999974
No 455
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.22 E-value=0.71 Score=45.82 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=37.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcccccc
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHFSSLS 65 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~~s~~ 65 (539)
.-|+|||.|+-|.+.|..|.++|+.|.++.+....+.......
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~ 46 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE 46 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh
Confidence 4699999999999999999999999999999888765555443
No 456
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.21 E-value=1.5 Score=34.99 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHHHHhhC-CCeEEEecc
Q 009247 22 AFDLIVIGTGLPESVISAAASAS-GKSVLHLDP 53 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~-G~~VlvlE~ 53 (539)
...++|+|+|-.|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 789999988
No 457
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=86.19 E-value=0.89 Score=45.53 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||.|..|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999875
No 458
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.11 E-value=1.3 Score=39.47 Aligned_cols=34 Identities=12% Similarity=0.299 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCC-CeEEEeccCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASG-KSVLHLDPNP 55 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~ 55 (539)
...++|||+|..|...|..|++.| ++|.+++++.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 357999999999999999999996 8999999874
No 459
>PLN02712 arogenate dehydrogenase
Probab=86.01 E-value=1.2 Score=49.89 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.6
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
....|.|||.|.-|-..|..|.++|++|.++++++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 85 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD 85 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34679999999999999999999999999999874
No 460
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=86.00 E-value=0.7 Score=48.14 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=35.4
Q ss_pred CCCCCCcccEEEECCChhHHHHHHHHhhC-----CCeEEEeccCCCC
Q 009247 16 PPIEPTAFDLIVIGTGLPESVISAAASAS-----GKSVLHLDPNPFY 57 (539)
Q Consensus 16 ~~l~~~~~DViIIGaGl~Gl~aA~~La~~-----G~~VlvlE~~~~~ 57 (539)
..++...+||||||+|.+|+.+|+.|+.. .++|+++|....+
T Consensus 12 ~~~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HHHhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 34566789999999999999999999963 7899999986554
No 461
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=86.00 E-value=2.5 Score=44.79 Aligned_cols=50 Identities=22% Similarity=0.334 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCcEEEcCEEEE
Q 009247 280 ELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQDILSHKLVL 332 (539)
Q Consensus 280 eL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~~i~a~~VI~ 332 (539)
.+-+.|.+.++..|++++.+++|++|..+ ++++++|+ .+|++++|+.||.
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~--~g~v~~v~-~~g~~i~A~~VI~ 158 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR--DGKVVGVE-ADGDVIEAKTVIL 158 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEe--CCEEEEEE-cCCcEEECCEEEE
Confidence 55566778888899999999999999876 56666665 5778899999984
No 462
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.97 E-value=0.75 Score=46.42 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.+.|+|+|-.|+..|++|+++|..|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 589999999999999999999988888877664
No 463
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.90 E-value=0.86 Score=48.18 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=31.1
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
-.|.|||-|+.|.++|.+|.+.|++|...|.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 4699999999999999999999999999997653
No 464
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.73 E-value=0.84 Score=52.19 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCe-EEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKS-VLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~~~ 56 (539)
-.|||||+|..|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 4799999999999999999999987 999998765
No 465
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.50 E-value=0.88 Score=49.03 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.1
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.-.|+|+|+|..||.++..+...|-+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3579999999999999999999999999999875
No 466
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.47 E-value=1 Score=47.29 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.-.|+|+|+|..|+.+|..|...|.+|+++|.++.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 35799999999999999999999999999998753
No 467
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=85.07 E-value=1.2 Score=43.33 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=32.2
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
...++|+|+|..+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 36899999999999999999999999999998765
No 468
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.02 E-value=0.86 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++.+|++|.++|.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3599999999999999999999999999998864
No 469
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=85.00 E-value=2.8 Score=41.13 Aligned_cols=53 Identities=15% Similarity=0.099 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC-----------CCcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-----------SGQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-----------~G~~i~a~~VI~ 332 (539)
.++.+.|.+.+...|+++++++.|..+..++ ++++.||.+. +..+++|+.||.
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~-~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ 167 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRE-DPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVD 167 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeC-CCcEEEEEEccccccccCCCCCcEEEEcCEEEE
Confidence 5788889888899999999999999998762 4477777653 124689999883
No 470
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=84.95 E-value=1.1 Score=42.15 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=27.7
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
-+.|+|+|--|...|.+|+++|+.|.+-=++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCC
Confidence 4799999999999999999999999986443
No 471
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=84.94 E-value=0.94 Score=48.49 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
.+|-|||.|.-|...|..|+++|++|.+++++..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4799999999999999999999999999998754
No 472
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=84.87 E-value=1.1 Score=44.96 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=30.2
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 58999999999999999999999999999875
No 473
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=84.77 E-value=2.9 Score=44.44 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=36.4
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCCCCcc
Q 009247 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~GG~~ 61 (539)
||||||+|++|++||+.++++| .+|+||||++..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 8999999999999999999999 9999999999998864
No 474
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=84.65 E-value=2.5 Score=46.73 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=41.9
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcCE-EEE
Q 009247 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSHK-LVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~a~~-VI~ 332 (539)
...+...|.+.++..|++|+++++|++|+.++ +|+++||+.. +|+ .++|++ ||+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVil 269 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVIL 269 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEE
Confidence 35677778788888999999999999999863 6889998653 344 377874 774
No 475
>PRK06175 L-aspartate oxidase; Provisional
Probab=84.65 E-value=3.6 Score=43.72 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=35.5
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCc
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSH 60 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~ 60 (539)
.++||||||+|.+||+||..++ +|.+|++|||.+..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 4689999999999999999975 79999999999988875
No 476
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.64 E-value=1.3 Score=45.37 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 54 (539)
...|+|||+|--|+.+|..|+++|. ++.++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999999999999999999998 89999984
No 477
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=84.63 E-value=1.3 Score=44.27 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~ 55 (539)
..|+|||+|-+|.++|..|++.|. +|.+++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 579999999999999999999996 799999874
No 478
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.62 E-value=1.2 Score=44.90 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC--eEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK--SVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~--~VlvlE~~~ 55 (539)
..|.|||+|..|...|..|++.|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999995 899999874
No 479
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=84.61 E-value=1.2 Score=44.63 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 22 AFDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 22 ~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
...|+|||.|-.|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4579999999999999999999999999999984
No 480
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.61 E-value=1.6 Score=40.73 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=30.1
Q ss_pred CcccEEEECC-ChhHHHHHHHHhhCCCeEEEeccC
Q 009247 21 TAFDLIVIGT-GLPESVISAAASASGKSVLHLDPN 54 (539)
Q Consensus 21 ~~~DViIIGa-Gl~Gl~aA~~La~~G~~VlvlE~~ 54 (539)
....++|+|+ |-.|..+|..|++.|++|.++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3457999995 999999999999999999999876
No 481
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=84.60 E-value=1.4 Score=46.94 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=33.9
Q ss_pred CcccEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCC
Q 009247 21 TAFDLIVIGTGLPESVISAAASASGKSVLHLDPNPFYG 58 (539)
Q Consensus 21 ~~~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~G 58 (539)
.-.+|+|||+|-++-..|..|++.|.+|.++=|++-++
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 34789999999999999999999999999998886653
No 482
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.52 E-value=0.95 Score=51.12 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~~~~ 56 (539)
..|.|||+|..|.-.|..++ ++|+.|+++|.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 35999999999999999998 69999999999853
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.43 E-value=1 Score=48.05 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=30.9
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~ 56 (539)
+|+|||+|-.|..+|..|.+.|++|.++|++..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999999754
No 484
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=84.33 E-value=1.5 Score=44.47 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccCCCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPNPFY 57 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~~~~ 57 (539)
..|.|||+|..|..+|..|+..|. +|.++|.++..
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 579999999999999999999996 89999998764
No 485
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=83.96 E-value=3 Score=32.54 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCC
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASG 322 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G 322 (539)
.++.+.+.+..+..|.++++++.|++|..+. ++ +. |+++||
T Consensus 40 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~~~g 80 (80)
T PF00070_consen 40 PDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTLEDG 80 (80)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEEETS
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEEecC
Confidence 4677778888899999999999999998772 44 55 888876
No 486
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.81 E-value=1.2 Score=48.29 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=30.7
Q ss_pred ccEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
..|.|+|.|.+|+++|..|.+.|++|.+.|.+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 359999999999999999999999999999875
No 487
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=83.70 E-value=3.8 Score=40.03 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=36.5
Q ss_pred cCCcchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeCCCc-EEEcCEEEEC
Q 009247 275 IYGQGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLASGQ-DILSHKLVLD 333 (539)
Q Consensus 275 ~gG~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~~G~-~i~a~~VI~~ 333 (539)
.=||..|++.++. .-+|+++++|++|... + +.+.+.+++|. ...+|.||+.
T Consensus 104 ~pgmsalak~LAt-----dL~V~~~~rVt~v~~~--~-~~W~l~~~~g~~~~~~d~vvla 155 (331)
T COG3380 104 EPGMSALAKFLAT-----DLTVVLETRVTEVART--D-NDWTLHTDDGTRHTQFDDVVLA 155 (331)
T ss_pred CcchHHHHHHHhc-----cchhhhhhhhhhheec--C-CeeEEEecCCCcccccceEEEe
Confidence 4478888885543 3468999999999875 3 34778886665 4578988853
No 488
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=83.49 E-value=4.3 Score=42.59 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=34.1
Q ss_pred EEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 26 IVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 26 iIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
||||||.+||+||+.|++.|++|+++||++.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence 699999999999999999999999999999998754
No 489
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=83.40 E-value=1.4 Score=38.39 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHHHHhhCCC-eEEEeccC
Q 009247 23 FDLIVIGTGLPESVISAAASASGK-SVLHLDPN 54 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La~~G~-~VlvlE~~ 54 (539)
..|+|||+|-.|+.+|..|++.|. +++++|..
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 469999999999999999999998 68888874
No 490
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=83.39 E-value=1.6 Score=40.06 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=28.3
Q ss_pred cEEEECCChhHHHHHHHHhhCCCe-EEEeccC
Q 009247 24 DLIVIGTGLPESVISAAASASGKS-VLHLDPN 54 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~-VlvlE~~ 54 (539)
.|+|||+|-.|+.+|..|++.|.. +.++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 389999999999999999999985 9999985
No 491
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.20 E-value=1.3 Score=50.25 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHHHHh-hCCCeEEEeccCC
Q 009247 23 FDLIVIGTGLPESVISAAAS-ASGKSVLHLDPNP 55 (539)
Q Consensus 23 ~DViIIGaGl~Gl~aA~~La-~~G~~VlvlE~~~ 55 (539)
..|.|||+|..|.-.|..++ ++|+.|.++|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 45999999999999999999 8999999999875
No 492
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=83.16 E-value=3.9 Score=42.33 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=32.2
Q ss_pred cEEEECCChhHHHHHHHHhhCC-CeEEEeccCCCC
Q 009247 24 DLIVIGTGLPESVISAAASASG-KSVLHLDPNPFY 57 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G-~~VlvlE~~~~~ 57 (539)
||+|||||++||++|..|+++| ++|+|+|+++..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 8999999999999999999999 999999998654
No 493
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=83.15 E-value=1.2 Score=47.80 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHH-HHHHHhhCCCeEEEeccCCC
Q 009247 23 FDLIVIGTGLPESV-ISAAASASGKSVLHLDPNPF 56 (539)
Q Consensus 23 ~DViIIGaGl~Gl~-aA~~La~~G~~VlvlE~~~~ 56 (539)
..|.|||.|-+|++ +|..|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 35999999999999 69999999999999998775
No 494
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=83.13 E-value=3.4 Score=45.48 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEeC-CCc--EEEcC-EEEE
Q 009247 278 QGELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRLA-SGQ--DILSH-KLVL 332 (539)
Q Consensus 278 ~geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l~-~G~--~i~a~-~VI~ 332 (539)
...|.+.|.+.++..|++++++++|++|+.+ +++++||+.. +|+ .++|+ .||+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~--~g~v~Gv~~~~~g~~~~i~A~~aVIl 263 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVE--DGRVVGVVVVRDGREVLIRARRGVLL 263 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEe--CCEEEEEEEEECCeEEEEEecceEEE
Confidence 3578889989899999999999999999887 7889998763 454 47785 4774
No 495
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=83.05 E-value=1.9 Score=34.89 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.8
Q ss_pred EEEECCChhHHHHHHHHhhCC---CeEEEe-ccCC
Q 009247 25 LIVIGTGLPESVISAAASASG---KSVLHL-DPNP 55 (539)
Q Consensus 25 ViIIGaGl~Gl~aA~~La~~G---~~Vlvl-E~~~ 55 (539)
+.|||+|--|.+.+..|.++| .+|.++ ++++
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~ 36 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP 36 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence 689999999999999999999 899966 7763
No 496
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.03 E-value=4.4 Score=44.72 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=46.9
Q ss_pred EeecCCc-chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 272 IYPIYGQ-GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 272 ~~p~gG~-geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
+++..+. ..|.++|.+.+...|.+++.++.+.+++.+ ++|+++||.. .+|+ .|+|+.||+
T Consensus 118 ~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVL 183 (570)
T PRK05675 118 CAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKN-QDGAVVGVIAICIETGETVYIKSKATVL 183 (570)
T ss_pred EecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEc-CCCeEEEEEEEEcCCCcEEEEecCeEEE
Confidence 3444444 478899988888899999999999999875 2689999864 4565 478999995
No 497
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=82.97 E-value=4.8 Score=44.41 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=35.5
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCCCCCCcc
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNPFYGSHF 61 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~~~GG~~ 61 (539)
||||||+|++||+||+.++++|.+|+||||....||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~s 38 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSHT 38 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCcc
Confidence 89999999999999999999999999999999877744
No 498
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=82.94 E-value=4.4 Score=39.68 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCC--cEEEEEeCC-----------CcEEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSG--SYKGVRLAS-----------GQDILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g--~~~gV~l~~-----------G~~i~a~~VI~ 332 (539)
.++.+.|.+.+...|++++.++.|+.+..+ ++ ++.||.+.. ..+++|+.||.
T Consensus 100 ~el~~~L~~~a~e~GV~I~~~t~V~dli~~--~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 100 AEFISTLASKALQAGAKIFNGTSVEDLITR--DDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred HHHHHHHHHHHHHcCCEEECCcEEEEEEEe--CCCCceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 478888888888899999999999999886 34 688887632 23688998884
No 499
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=82.94 E-value=4.6 Score=45.13 Aligned_cols=54 Identities=28% Similarity=0.444 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHcCcEEEeCCceeEEEEecCCCcEEEEEe---CCCc--EEEcCEEEE
Q 009247 279 GELPQAFCRRAAVKGCLYVLRMPVISLLTDQNSGSYKGVRL---ASGQ--DILSHKLVL 332 (539)
Q Consensus 279 geL~qal~r~~a~~Gg~~~L~~~V~~I~~~~~~g~~~gV~l---~~G~--~i~a~~VI~ 332 (539)
..+.++|.+.++..|++++.+++|.+|..++.++++++|++ .+|+ +++|+.||.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVn 290 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVN 290 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEE
Confidence 47889999999999999999999999987521366777765 2444 589999985
No 500
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=82.91 E-value=1.5 Score=44.02 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHHHHhhCCCeEEEeccCC
Q 009247 24 DLIVIGTGLPESVISAAASASGKSVLHLDPNP 55 (539)
Q Consensus 24 DViIIGaGl~Gl~aA~~La~~G~~VlvlE~~~ 55 (539)
.|.|||.|..|...|..|+++|++|.+++++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence 58999999999999999999999999999874
Done!