Query 009248
Match_columns 539
No_of_seqs 432 out of 2250
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 22:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 6.3E-68 1.4E-72 487.2 21.5 388 13-404 13-401 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 5.8E-50 1.3E-54 393.7 30.6 363 17-404 65-467 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 1.3E-44 2.7E-49 356.0 27.6 331 67-422 58-423 (476)
4 KOG1427 Uncharacterized conser 100.0 3E-37 6.5E-42 284.7 16.1 299 18-348 75-398 (443)
5 KOG0783 Uncharacterized conser 100.0 2E-28 4.4E-33 251.9 16.2 310 18-360 140-458 (1267)
6 KOG0783 Uncharacterized conser 99.9 9.3E-28 2E-32 247.0 12.6 304 71-405 136-452 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 4.1E-22 8.8E-27 212.6 20.2 303 59-405 482-840 (3738)
8 KOG1428 Inhibitor of type V ad 99.9 1.8E-21 4E-26 207.7 23.4 286 16-381 494-871 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 4.7E-12 1E-16 90.5 4.7 50 76-125 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 8.8E-12 1.9E-16 89.1 4.2 50 348-399 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 1.4E-10 2.9E-15 72.2 4.2 30 231-260 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 1.8E-10 4E-15 71.6 4.3 30 112-141 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 9.5E-12 2.1E-16 131.2 -7.3 144 47-193 5-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 2.9E-11 6.3E-16 127.7 -8.3 144 101-259 5-156 (850)
15 KOG0315 G-protein beta subunit 95.8 1.1 2.4E-05 42.2 17.1 110 234-358 132-246 (311)
16 PF11725 AvrE: Pathogenicity f 95.7 0.33 7.2E-06 56.9 16.3 291 57-403 490-815 (1774)
17 KOG0291 WD40-repeat-containing 95.1 6.3 0.00014 42.9 24.3 122 112-258 300-424 (893)
18 KOG3669 Uncharacterized conser 93.7 11 0.00023 40.0 20.4 71 57-134 228-299 (705)
19 KOG3669 Uncharacterized conser 92.0 1.7 3.7E-05 45.6 11.2 109 117-253 190-299 (705)
20 PF02178 AT_hook: AT hook moti 91.3 0.091 2E-06 25.6 0.6 7 532-538 3-9 (13)
21 KOG0943 Predicted ubiquitin-pr 90.5 0.048 1E-06 60.9 -1.5 130 57-192 373-507 (3015)
22 PF11725 AvrE: Pathogenicity f 90.3 1.9 4E-05 51.1 10.6 110 222-347 696-812 (1774)
23 KOG0646 WD40 repeat protein [G 88.0 35 0.00077 35.2 18.6 98 57-171 83-185 (476)
24 smart00384 AT_hook DNA binding 83.7 0.63 1.4E-05 27.1 1.1 7 532-538 3-9 (26)
25 KOG4693 Uncharacterized conser 83.1 11 0.00025 36.0 9.7 107 238-356 80-199 (392)
26 KOG1274 WD40 repeat protein [G 81.9 97 0.0021 35.0 26.2 67 67-136 15-85 (933)
27 PF07569 Hira: TUP1-like enhan 81.4 5.6 0.00012 37.6 7.3 68 286-355 14-93 (219)
28 KOG4693 Uncharacterized conser 80.3 58 0.0013 31.4 20.3 64 119-189 80-147 (392)
29 PF07569 Hira: TUP1-like enhan 79.8 7.5 0.00016 36.7 7.6 30 109-138 12-41 (219)
30 KOG0943 Predicted ubiquitin-pr 79.5 0.27 5.8E-06 55.3 -2.5 130 109-257 373-506 (3015)
31 KOG0293 WD40 repeat-containing 76.8 94 0.002 31.9 15.7 66 287-357 398-470 (519)
32 COG4257 Vgb Streptogramin lyas 76.4 26 0.00055 34.0 9.8 134 16-187 69-205 (353)
33 PLN02153 epithiospecifier prot 74.8 99 0.0021 31.2 17.1 18 341-358 244-261 (341)
34 KOG4441 Proteins containing BT 73.5 99 0.0022 33.8 15.1 22 290-311 509-530 (571)
35 PRK10590 ATP-dependent RNA hel 72.2 6.2 0.00013 41.9 5.4 18 522-539 435-452 (456)
36 KOG1408 WD40 repeat protein [F 69.7 1.8E+02 0.004 32.1 16.8 100 115-251 138-244 (1080)
37 PHA03098 kelch-like protein; P 69.6 95 0.0021 33.5 14.0 17 341-357 480-496 (534)
38 cd00200 WD40 WD40 domain, foun 68.2 1E+02 0.0022 28.6 28.7 57 69-137 65-123 (289)
39 cd00200 WD40 WD40 domain, foun 67.8 1E+02 0.0023 28.5 30.3 110 57-190 11-123 (289)
40 KOG0291 WD40-repeat-containing 66.3 2.2E+02 0.0048 31.7 27.9 110 15-137 103-219 (893)
41 PHA02713 hypothetical protein; 66.3 1.8E+02 0.004 31.7 15.3 16 342-357 506-521 (557)
42 PLN02153 epithiospecifier prot 64.7 1.6E+02 0.0035 29.6 19.6 18 170-190 129-146 (341)
43 PHA02713 hypothetical protein; 64.5 1.4E+02 0.0031 32.5 14.0 20 118-137 341-360 (557)
44 PTZ00415 transmission-blocking 64.1 3.1 6.6E-05 49.3 1.0 17 295-311 63-79 (2849)
45 PF06524 NOA36: NOA36 protein; 63.3 3.7 7.9E-05 38.8 1.2 8 249-256 87-94 (314)
46 KOG1832 HIV-1 Vpr-binding prot 62.0 3.6 7.7E-05 45.6 1.0 13 237-249 1112-1124(1516)
47 KOG4501 Transcription coactiva 61.9 7.9 0.00017 40.5 3.4 13 506-518 670-682 (707)
48 KOG1408 WD40 repeat protein [F 61.8 2.6E+02 0.0056 31.1 14.4 29 108-136 216-248 (1080)
49 smart00706 TECPR Beta propelle 61.2 19 0.00041 22.7 4.0 25 229-253 8-33 (35)
50 smart00706 TECPR Beta propelle 59.8 21 0.00046 22.5 4.0 24 111-134 9-33 (35)
51 PF02724 CDC45: CDC45-like pro 59.3 3.7 8.1E-05 45.2 0.7 14 394-407 96-109 (622)
52 KOG0649 WD40 repeat protein [G 58.9 1.1E+02 0.0023 29.3 9.8 48 228-276 62-110 (325)
53 KOG2096 WD40 repeat protein [G 57.9 2E+02 0.0044 28.6 20.0 88 324-411 270-370 (420)
54 KOG2270 Serine/threonine prote 56.5 1.4 2.9E-05 44.6 -2.9 31 444-474 432-462 (520)
55 KOG1832 HIV-1 Vpr-binding prot 56.4 4.6 9.9E-05 44.8 0.7 14 167-181 1110-1123(1516)
56 KOG1034 Transcriptional repres 56.1 38 0.00082 33.6 6.7 56 18-84 327-382 (385)
57 PF02239 Cytochrom_D1: Cytochr 55.5 2.5E+02 0.0054 28.8 15.6 159 163-363 29-197 (369)
58 KOG1900 Nuclear pore complex, 54.9 1.3E+02 0.0028 35.7 11.6 166 17-194 96-276 (1311)
59 PHA03098 kelch-like protein; P 53.6 88 0.0019 33.8 10.2 12 17-28 340-351 (534)
60 TIGR01063 gyrA DNA gyrase, A s 50.5 4.4E+02 0.0096 30.2 17.7 169 56-253 535-715 (800)
61 TIGR03548 mutarot_permut cycli 49.5 1.2E+02 0.0026 30.2 9.7 17 120-137 116-132 (323)
62 KOG4441 Proteins containing BT 46.0 2.3E+02 0.0051 31.0 11.8 56 299-356 471-530 (571)
63 PLN02193 nitrile-specifier pro 45.9 3.9E+02 0.0086 28.3 15.4 18 341-358 370-387 (470)
64 KOG0646 WD40 repeat protein [G 45.6 3.8E+02 0.0082 28.0 17.8 155 161-355 82-245 (476)
65 KOG1900 Nuclear pore complex, 44.7 4.6E+02 0.0099 31.4 13.8 170 71-262 93-278 (1311)
66 KOG0526 Nucleosome-binding fac 44.6 17 0.00036 38.2 2.5 17 67-83 59-75 (615)
67 PF10168 Nup88: Nuclear pore c 44.5 5.2E+02 0.011 29.3 17.6 118 16-134 38-176 (717)
68 KOG3580 Tight junction protein 44.0 30 0.00065 36.9 4.2 43 492-536 154-197 (1027)
69 KOG0315 G-protein beta subunit 44.0 3E+02 0.0066 26.5 21.6 145 70-255 45-196 (311)
70 PF06739 SBBP: Beta-propeller 43.4 27 0.00058 22.7 2.5 18 240-257 16-33 (38)
71 PF04841 Vps16_N: Vps16, N-ter 43.3 4E+02 0.0088 27.7 20.7 70 57-135 82-153 (410)
72 PHA02790 Kelch-like protein; P 43.2 3E+02 0.0064 29.4 12.0 16 341-356 439-454 (480)
73 KOG1524 WD40 repeat-containing 41.2 4.8E+02 0.01 28.0 16.8 36 332-380 323-358 (737)
74 PF12341 DUF3639: Protein of u 39.8 78 0.0017 19.0 3.8 23 229-251 2-24 (27)
75 PF07250 Glyoxal_oxid_N: Glyox 39.6 2.1E+02 0.0046 27.4 9.1 118 9-137 67-189 (243)
76 KOG1834 Calsyntenin [Extracell 39.5 17 0.00037 39.1 1.7 6 469-474 911-916 (952)
77 KOG4032 Uncharacterized conser 38.6 32 0.00068 31.0 3.0 6 400-405 82-87 (184)
78 KOG4152 Host cell transcriptio 38.4 2E+02 0.0043 30.5 9.0 14 69-83 140-153 (830)
79 KOG2055 WD40 repeat protein [G 37.2 5.1E+02 0.011 27.2 14.2 42 238-280 389-433 (514)
80 TIGR02658 TTQ_MADH_Hv methylam 36.4 4.8E+02 0.01 26.6 26.0 58 330-400 289-350 (352)
81 TIGR01062 parC_Gneg DNA topois 36.3 6.8E+02 0.015 28.4 13.6 81 54-139 523-607 (735)
82 PF07646 Kelch_2: Kelch motif; 36.3 33 0.00072 23.4 2.3 17 341-357 4-20 (49)
83 PHA03282 envelope glycoprotein 36.2 52 0.0011 34.2 4.5 61 460-521 461-521 (540)
84 PF04841 Vps16_N: Vps16, N-ter 36.0 5.2E+02 0.011 26.9 16.6 64 288-357 220-287 (410)
85 COG5129 MAK16 Nuclear protein 35.9 17 0.00036 33.5 0.9 7 246-252 55-61 (303)
86 PF09309 FCP1_C: FCP1, C-termi 35.7 12 0.00027 34.8 0.0 9 466-474 162-170 (263)
87 KOG1834 Calsyntenin [Extracell 35.7 15 0.00033 39.4 0.7 12 464-475 911-922 (952)
88 TIGR03548 mutarot_permut cycli 35.0 2.3E+02 0.005 28.2 9.2 18 121-138 216-233 (323)
89 KOG2897 DNA-binding protein YL 34.1 21 0.00046 35.8 1.3 18 511-528 103-120 (390)
90 COG4257 Vgb Streptogramin lyas 33.7 3.7E+02 0.0081 26.4 9.4 73 231-316 95-171 (353)
91 KOG1240 Protein kinase contain 33.6 4E+02 0.0088 31.6 11.1 76 111-192 1050-1130(1431)
92 KOG0282 mRNA splicing factor [ 32.2 6.3E+02 0.014 26.7 17.0 69 290-363 393-468 (503)
93 KOG3064 RNA-binding nuclear pr 31.6 35 0.00076 32.4 2.2 15 297-311 51-65 (303)
94 PRK05560 DNA gyrase subunit A; 31.4 8.6E+02 0.019 28.0 20.0 170 56-254 537-719 (805)
95 PF13418 Kelch_4: Galactose ox 31.3 48 0.001 22.4 2.5 16 68-83 4-19 (49)
96 KOG0289 mRNA splicing factor [ 30.6 6.4E+02 0.014 26.3 11.8 149 110-309 262-416 (506)
97 PHA02790 Kelch-like protein; P 30.5 1.1E+02 0.0023 32.7 6.1 13 16-28 315-327 (480)
98 PF01436 NHL: NHL repeat; Int 29.9 96 0.0021 18.4 3.3 18 69-86 5-22 (28)
99 PF13964 Kelch_6: Kelch motif 29.4 43 0.00092 22.8 1.9 19 341-359 4-22 (50)
100 KOG0772 Uncharacterized conser 29.2 34 0.00073 36.0 1.9 7 432-438 112-118 (641)
101 KOG0649 WD40 repeat protein [G 28.7 2.1E+02 0.0046 27.4 6.8 68 297-364 25-97 (325)
102 KOG0294 WD40 repeat-containing 28.2 6.1E+02 0.013 25.3 16.9 19 240-258 99-117 (362)
103 KOG0262 RNA polymerase I, larg 28.2 39 0.00086 39.4 2.3 21 236-257 1004-1024(1640)
104 KOG1034 Transcriptional repres 27.5 1.2E+02 0.0027 30.1 5.2 58 297-356 322-382 (385)
105 COG5129 MAK16 Nuclear protein 27.0 27 0.00059 32.2 0.7 10 301-310 54-63 (303)
106 PRK02529 petN cytochrome b6-f 26.8 59 0.0013 20.2 1.9 16 348-363 17-32 (33)
107 PF13854 Kelch_5: Kelch motif 26.7 61 0.0013 21.3 2.3 18 341-358 7-24 (42)
108 PF15470 DUF4637: Domain of un 26.1 65 0.0014 27.6 2.7 10 515-524 71-80 (173)
109 PF05086 Dicty_REP: Dictyostel 25.3 25 0.00055 38.6 0.2 7 305-311 700-706 (911)
110 KOG0644 Uncharacterized conser 25.0 7.4E+02 0.016 28.3 10.9 137 242-415 367-507 (1113)
111 PLN02772 guanylate kinase 24.6 1.7E+02 0.0036 30.4 5.9 61 16-85 31-95 (398)
112 KOG2444 WD40 repeat protein [G 23.7 3.3E+02 0.0072 25.8 7.1 60 67-136 70-131 (238)
113 KOG0526 Nucleosome-binding fac 23.6 79 0.0017 33.5 3.3 7 348-354 351-357 (615)
114 PF09309 FCP1_C: FCP1, C-termi 23.5 27 0.00058 32.6 0.0 8 531-538 212-219 (263)
115 KOG2280 Vacuolar assembly/sort 23.2 9.8E+02 0.021 27.0 11.4 69 231-313 86-156 (829)
116 KOG3348 BolA (bacterial stress 22.9 60 0.0013 25.2 1.8 21 57-77 22-42 (85)
117 PTZ00415 transmission-blocking 22.1 44 0.00095 40.4 1.3 6 348-353 71-76 (2849)
118 PF04762 IKI3: IKI3 family; I 22.0 1.3E+03 0.029 27.0 20.8 258 43-353 413-681 (928)
119 TIGR00927 2A1904 K+-dependent 21.8 32 0.00069 39.3 0.1 31 454-484 862-892 (1096)
120 PLN02193 nitrile-specifier pro 21.7 9.7E+02 0.021 25.3 17.6 17 68-85 168-184 (470)
121 PF08450 SGL: SMP-30/Gluconola 21.7 6.6E+02 0.014 23.5 9.4 17 120-136 186-202 (246)
122 PF03785 Peptidase_C25_C: Pept 21.4 1.8E+02 0.0039 22.5 4.1 41 99-141 7-48 (81)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=6.3e-68 Score=487.19 Aligned_cols=388 Identities=72% Similarity=1.238 Sum_probs=367.7
Q ss_pred ccCCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCC
Q 009248 13 ETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGH 92 (539)
Q Consensus 13 ~~~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~ 92 (539)
+...+..|+++.+|.-.+.+.|.....+..++..|.++..+.+++|+.|+.||...|+++|+-+|++|+||.|..||||+
T Consensus 13 ~s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGh 92 (443)
T KOG1427|consen 13 ESSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGH 92 (443)
T ss_pred hhhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCc
Confidence 34447899999999999999999887777789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeecc-CceEEEEeCCC
Q 009248 93 GDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLV-SEVTATACGAD 171 (539)
Q Consensus 93 g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~-~~i~~ia~G~~ 171 (539)
++...+..|+.|+.|...+|++.+||++||++||++|.||+||.|.+||||++...+.+..+|.++.. +.|+.|+||..
T Consensus 93 gD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~ 172 (443)
T KOG1427|consen 93 GDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGAD 172 (443)
T ss_pred cchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccc
Confidence 99999999999999999999999999999999999999999999999999999988877777666654 45999999999
Q ss_pred eeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEE
Q 009248 172 FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVY 251 (539)
Q Consensus 172 ~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy 251 (539)
|+++|+ ..+ .|.++|...|||||++....++.+++.+.+.|+.++.|..|..+.+.+|+++|||.+|++|++.+++||
T Consensus 173 ftv~l~-~~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVy 250 (443)
T KOG1427|consen 173 FTVWLS-STE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVY 250 (443)
T ss_pred eEEEee-ccc-ceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEE
Confidence 999999 788 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCC
Q 009248 252 TWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGW 331 (539)
Q Consensus 252 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~ 331 (539)
+||.+.||.||+..+++...|++|..|......++ .+.||+.+++++.+-|.||+||.+.+.+..+++|.++..|+++
T Consensus 251 sWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~--~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgw 328 (443)
T KOG1427|consen 251 SWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPP--NAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGW 328 (443)
T ss_pred EeccccccccccccchhhHHHHHHHHhcCCCCCCc--ceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCc
Confidence 99999999999999999999999999988766543 7899999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCcEEEEEeCCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCc
Q 009248 332 NLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTN 404 (539)
Q Consensus 332 ~i~~i~~G~~h~~~lt~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~ 404 (539)
++..+.|+..|.++-.|..+..||...+|.++.++..+.+...|.+++.|.+.+|.+|+||+.|+++|+++-.
T Consensus 329 nl~~~~~~~~h~~v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t~ 401 (443)
T KOG1427|consen 329 NLRWMDSGSMHHFVGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRTD 401 (443)
T ss_pred cCCCcCccceeeeecccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcccc
Confidence 9999999999999999999999999999999988888999999999999999999999999999999998765
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=5.8e-50 Score=393.66 Aligned_cols=363 Identities=27% Similarity=0.416 Sum_probs=285.5
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCC--CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD 94 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~--~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~ 94 (539)
..-..||+||+|...+||++.+.. .+..|..+++. +...|+.++ ||..|+++|+.||.||+||.|..|+||...
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~--~~~~P~~~~~~~~d~~~i~~~a--cGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~ 140 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDET--KVDRPQLNPFGRIDKASIIKIA--CGGNHSLGLDHDGNLYSWGDNDDGALGRDI 140 (476)
T ss_pred hheeeeEEEecCcceeeccCCchh--cccCceecCcccccceeeEEee--cCCceEEeecCCCCEEEeccCccccccccc
Confidence 466789999999999999998642 36788888876 555677777 879999999999999999999999999866
Q ss_pred C----------------CCcccceEecc----CCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcc---
Q 009248 95 K----------------IQRDRPTIVSE----LSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEI--- 151 (539)
Q Consensus 95 ~----------------~~~~~P~~v~~----~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~--- 151 (539)
. .....|..|+. ....+|++|+||++++++|+++|+||+||....+.++.+.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~ 220 (476)
T COG5184 141 HKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS 220 (476)
T ss_pred ccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccce
Confidence 1 12467888876 234479999999999999999999999999999999988665543
Q ss_pred -cccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeec-ccCCC
Q 009248 152 -EPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA-ALAGE 229 (539)
Q Consensus 152 -~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~-~~~~~ 229 (539)
.++|+......|+++++|.+|.++|+ .+| +||.||+|..||||......+.. +..+. .+.-.
T Consensus 221 ~~~~p~~v~~~~i~qla~G~dh~i~lt-~~G-~vy~~Gs~qkgqlG~~~~e~~~~--------------~~lv~~~f~i~ 284 (476)
T COG5184 221 IQFTPLKVPKKAIVQLAAGADHLIALT-NEG-KVYGWGSNQKGQLGRPTSERLKL--------------VVLVGDPFAIR 284 (476)
T ss_pred eeeeeeecCchheeeeccCCceEEEEe-cCC-cEEEecCCcccccCCchhhhccc--------------ccccCChhhhh
Confidence 36666666567999999999999999 889 99999999999999887654321 11111 11223
Q ss_pred eEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCC--ceEEEecCCceEEEeCCCcEE
Q 009248 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPP--EAVISAGSVNSSCTAGGGQLY 307 (539)
Q Consensus 230 ~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~--v~~I~~G~~~s~~lt~~G~vy 307 (539)
.|..|+||.+|++||+++|+||+||.|.+||||.... ...+.............. |..|++|..|+++|..+|.||
T Consensus 285 ~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~--~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~ 362 (476)
T COG5184 285 NIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD--GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLY 362 (476)
T ss_pred hhhhcccCcceEEEEcCCCeEEEeccchhcccccCcc--cccceeeccccccccCCCceEEEEecCcceEEEEecCceEE
Confidence 4889999999999999999999999999999999822 222333222222222222 578999999999999999999
Q ss_pred EecCCCCCC--------CCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeee
Q 009248 308 MWGKLKNNG--------DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKV 378 (539)
Q Consensus 308 ~wG~n~~~~--------~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v 378 (539)
.||++.... .....|.++... ..+.+|+||..|.++.+ +|+||.||++++||||.++. ...+..|+.+
T Consensus 363 a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~-~~~~~~pt~i 439 (476)
T COG5184 363 AFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK-EADVLVPTLI 439 (476)
T ss_pred EecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCch-hhhccccccc
Confidence 999987322 122233343322 26999999999999999 89999999999999999988 5777888888
Q ss_pred cc--CCCCEEEEEEecCCceEEEEcCCc
Q 009248 379 DI--LEGMHVISVACGYGHSLVIVDRTN 404 (539)
Q Consensus 379 ~~--l~~~~v~~va~G~~ht~~l~~~g~ 404 (539)
.. +....++..-||..++++......
T Consensus 440 ~~~~~~~~~~i~~g~~~~~~v~~~~~~~ 467 (476)
T COG5184 440 RQPLLSGHNIILAGYGNQFSVIEETMDT 467 (476)
T ss_pred cccccCCCceEEeccCcceEEEecchhh
Confidence 74 567788888888888887765544
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-44 Score=356.04 Aligned_cols=331 Identities=24% Similarity=0.380 Sum_probs=268.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCc-ccceEeccC--CCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQR-DRPTIVSEL--SKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLG 143 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~-~~P~~v~~~--~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG 143 (539)
..|...++.-..||+||.|...|||++..... ..|++++.. ....|++++||..|+++|++||.||+||.|..|+||
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 55777899999999999999999999987655 789988876 567899999999999999999999999999999999
Q ss_pred CCCC--------------C--Ccccccceeecc----C-ceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCC
Q 009248 144 SGSI--------------R--NEIEPSPVRCLV----S-EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNE 202 (539)
Q Consensus 144 ~~~~--------------~--~~~~~~~~~~~~----~-~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~ 202 (539)
.... . ....|..++... . ++++++||++++++|+ .+| .||.||....+.++.+....
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~-~~G-~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILT-ADG-RVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEc-cCC-cEEEecCccccccccccccc
Confidence 8662 1 122333343311 2 5999999999999999 899 99999999888888874433
Q ss_pred CcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCC
Q 009248 203 YNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNN 282 (539)
Q Consensus 203 ~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~ 282 (539)
.. ....+.+|..+. ...|+++++|..|.++|+++|+||+||+|..||||.........+..+..+..
T Consensus 216 s~--------k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~-- 282 (476)
T COG5184 216 SQ--------KTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFA-- 282 (476)
T ss_pred cc--------cceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhh--
Confidence 11 113455666655 35799999999999999999999999999999999987766665555543322
Q ss_pred CCCCceEEEecCCceEEEeCCCcEEEecCCCCCC----------CCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCE
Q 009248 283 VLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG----------DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSC 351 (539)
Q Consensus 283 ~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~----------~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~v 351 (539)
+..+..|+||.+|++||+++|+||+||-|.... .....|.....+.+..|.+|++|..|+++|. +|.|
T Consensus 283 -i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l 361 (476)
T COG5184 283 -IRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTL 361 (476)
T ss_pred -hhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceE
Confidence 223568999999999999999999999986321 2344566666677778999999999999999 9999
Q ss_pred EEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCccccccccceeecCCCCCC
Q 009248 352 ISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQ 422 (539)
Q Consensus 352 y~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~~~~~ 422 (539)
|+||+++.+|||........+..|..+... .++.+|+||..|+++.+.++. +|.|+-...++
T Consensus 362 ~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gs-------vy~wG~ge~gn 423 (476)
T COG5184 362 YAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGS-------VYSWGWGEHGN 423 (476)
T ss_pred EEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccCCc-------eEEecCchhhh
Confidence 999999999999988644666666666533 359999999999999999998 78899888776
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3e-37 Score=284.66 Aligned_cols=299 Identities=22% Similarity=0.318 Sum_probs=233.2
Q ss_pred CCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCC
Q 009248 18 KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQ 97 (539)
Q Consensus 18 ~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~ 97 (539)
=+|+.|.||.|..||||++. ....-.|+.|+.|...+|++.+ ||++|+++||.+|.||+||.|.+||||+++...
T Consensus 75 megk~~~wGRNekGQLGhgD---~k~~e~Ptvi~gL~~~~iv~AA--~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~ 149 (443)
T KOG1427|consen 75 MEGKCYTWGRNEKGQLGHGD---MKQRERPTVISGLSKHKIVKAA--AGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKN 149 (443)
T ss_pred cccceeecccCccCccCccc---hhhccCCchhhhhhhhhHHHHh--hccCcEEEEecCCcEEEeccccccccccccccc
Confidence 47999999999999999994 2345679999999877777777 669999999999999999999999999998755
Q ss_pred cccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCC----------cccccceeec-----cCc
Q 009248 98 RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN----------EIEPSPVRCL-----VSE 162 (539)
Q Consensus 98 ~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~----------~~~~~~~~~~-----~~~ 162 (539)
...-++++......|+.|+||..|+++|+..+.|.++|.-.|||||++.-.. .+...|.+.. -..
T Consensus 150 ~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvq 229 (443)
T KOG1427|consen 150 EVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQ 229 (443)
T ss_pred ccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccccccccee
Confidence 4333333334455799999999999999999999999999999999985422 1122222211 124
Q ss_pred eEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeeccc--CCCeEEEEEeCCCe
Q 009248 163 VTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAAL--AGETIVKVACGTNH 240 (539)
Q Consensus 163 i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~~~I~~Ia~G~~h 240 (539)
|++++||.+|++++. .++ +||+||...||+||+..... ...|.++..| .+.--.++.||+..
T Consensus 230 iv~~acg~nhtvavd-~nk-rVysWGFGGyGRLGHaEqKD--------------EmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 230 IVKVACGTNHTVAVD-KNK-RVYSWGFGGYGRLGHAEQKD--------------EMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred eEEEeccCcceeeec-CCc-cEEEeccccccccccccchh--------------hHHHHHHHHhcCCCCCCcceeeeccc
Confidence 999999999999999 788 99999999999999988654 3455555544 34445688999999
Q ss_pred eEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCC-------
Q 009248 241 TVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLK------- 313 (539)
Q Consensus 241 s~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~------- 313 (539)
++++.+-|.||.||.+... -.....|.++-.+...++ ..+-|+..|. .+..+..+..||...
T Consensus 294 Sl~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl----~~~~~~~~h~-~v~ad~s~i~wg~~~~g~~lgg 362 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNL----RWMDSGSMHH-FVGADSSCISWGHAQYGELLGG 362 (443)
T ss_pred ceeecccceeEEeeccccC------cccccCCCchhhcCCccC----CCcCccceee-eecccccccccccccccccccC
Confidence 9999999999999987631 223345666666655543 3677776654 456677888998743
Q ss_pred -CCCCCccceeeeccCCCCcEEEEEcCCcEEEEEeC
Q 009248 314 -NNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGAD 348 (539)
Q Consensus 314 -~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt~ 348 (539)
+.+.....|+.+..|.+..|.+|+||+.|+++|.|
T Consensus 363 p~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd 398 (443)
T KOG1427|consen 363 PNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVD 398 (443)
T ss_pred ccccccccCccccchhcceeccceeeccceEEEEEc
Confidence 34456678999999999999999999999999874
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=2e-28 Score=251.88 Aligned_cols=310 Identities=19% Similarity=0.251 Sum_probs=224.9
Q ss_pred CCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCC--CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248 18 KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 18 ~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~--~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 95 (539)
.-..||+||.|.+..||++.. .....|..+..| .+.=+.+|+.+ .+|+++|+..|+||+||.+..|.||+|+.
T Consensus 140 ~pndvy~wG~N~N~tLGign~---~~~~~Pe~Vdlf~~Sg~~~~qV~l~--kfHSvfl~~kgqvY~cGhG~GGRlG~gde 214 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNG---KEPSSPERVDLFKTSGQLFSQVQLS--KFHSVFLTEKGQVYVCGHGAGGRLGFGDE 214 (1267)
T ss_pred CccceeEecccccccccccCC---CCCCChHHhHHHHhccHHHHHHHHh--hceeeEecCCCcEEEeccCCCCccCcCcc
Confidence 347899999999999999973 445667777655 34446778866 99999999999999999999999999988
Q ss_pred CCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCc-ccccceeec----cCceEEEEeCC
Q 009248 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNE-IEPSPVRCL----VSEVTATACGA 170 (539)
Q Consensus 96 ~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~-~~~~~~~~~----~~~i~~ia~G~ 170 (539)
.....|.+|+.|.+.+|.+|+....|+++||++|-||+||.|.++|||..+.... ..|..+... ...|+.|++|.
T Consensus 215 q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~ 294 (1267)
T KOG0783|consen 215 QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGK 294 (1267)
T ss_pred cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccc
Confidence 8889999999999999999999999999999999999999999999998654221 122222111 12489999999
Q ss_pred CeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcE
Q 009248 171 DFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYV 250 (539)
Q Consensus 171 ~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~v 250 (539)
.|+++.+ +- .||+||.|. ||||+.+.. .....|..+..+. ..|+.++|....+++++.++.+
T Consensus 295 ~hsVawt--~~-~VY~wGlN~-GQlGi~~n~-------------~~Vt~Pr~l~~~~-~~v~~v~a~~~ATVc~~~~~~i 356 (1267)
T KOG0783|consen 295 SHSVAWT--DT-DVYSWGLNN-GQLGISDNI-------------SVVTTPRRLAGLL-SPVIHVVATTRATVCLLQNNSI 356 (1267)
T ss_pred ceeeeee--cc-eEEEecccC-ceecCCCCC-------------ceeecchhhcccc-cceEEEEecCccEEEEecCCcE
Confidence 9999999 45 799999996 999988764 4456676554443 4799999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCC-CCccceeeeccCC
Q 009248 251 YTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG-DDWMYPKPLMDLS 329 (539)
Q Consensus 251 y~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~-~~~~~P~~v~~l~ 329 (539)
|++-+-..-.+.. ......-..|..-.-......+....+.....+++|+-|.||+|-.+...- .-...|..+.
T Consensus 357 ~~~ady~~~k~~~--n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~--- 431 (1267)
T KOG0783|consen 357 IAFADYNQVKLPF--NVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIF--- 431 (1267)
T ss_pred EEEecccceecCc--chhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeecccceee---
Confidence 9986543222211 111111112211110011123345667777889999999999998754322 1122233332
Q ss_pred CCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCC
Q 009248 330 GWNLRCMDSGNMHHFVGA-DSSCISWGHAQYG 360 (539)
Q Consensus 330 ~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~G 360 (539)
.|.+|+--.+..++++ || +|=++...
T Consensus 432 --~isdIa~~~N~~~~~t~dG---c~~Rg~~~ 458 (1267)
T KOG0783|consen 432 --EISDIAWTANSLILCTRDG---CWKRGLRS 458 (1267)
T ss_pred --ehhhhhhccceEEEEecCc---ceehhhhh
Confidence 4667877777778888 88 44444333
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=9.3e-28 Score=247.02 Aligned_cols=304 Identities=21% Similarity=0.328 Sum_probs=227.1
Q ss_pred EEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCC--CCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCC
Q 009248 71 VAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS--KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIR 148 (539)
Q Consensus 71 ~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~ 148 (539)
++++.-..||+||.|.+.-||+|+......|..|..|. +.-+.+|+.+..|+++|++.|+||+||.+.-|.||.+...
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 45666789999999999999999999999999998775 4457889999999999999999999999999999999887
Q ss_pred CcccccceeeccC-ceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccC
Q 009248 149 NEIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALA 227 (539)
Q Consensus 149 ~~~~~~~~~~~~~-~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~ 227 (539)
....|..++.+.. +|.+|++...|+++|| ..| .||+||.|..+|||+.+....- ..+.+.++..+..+.
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT-~~g-~Vys~GlN~~hqLG~~~~~~~~--------~~p~qI~a~r~kg~~ 285 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLT-KFG-SVYSWGLNGSHQLGLSNDELKK--------DDPIQITARRIKGFK 285 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEe-ecc-eEEEeecCcccccCCcCchhhc--------CchhhhhhHhhcchh
Confidence 7777777887544 5999999999999999 899 9999999999999998765311 112334444555443
Q ss_pred CCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCC-CccccEEecccccCCCCCCceEEEecCCceEEEeCCCcE
Q 009248 228 GETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK-DEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQL 306 (539)
Q Consensus 228 ~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~v 306 (539)
.|+.|++|..|+++.++. .||+||.|. ||||+.+.. .+..|+.+-. ...++..++|....++|++.++.+
T Consensus 286 --~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~-----~~~~v~~v~a~~~ATVc~~~~~~i 356 (1267)
T KOG0783|consen 286 --QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG-----LLSPVIHVVATTRATVCLLQNNSI 356 (1267)
T ss_pred --hhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcc-----cccceEEEEecCccEEEEecCCcE
Confidence 699999999999999876 799999986 999986653 3457765532 233567899999999999999999
Q ss_pred EEecCCCCCC--CCccc--eeeec----cCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCee
Q 009248 307 YMWGKLKNNG--DDWMY--PKPLM----DLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKK 377 (539)
Q Consensus 307 y~wG~n~~~~--~~~~~--P~~v~----~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~ 377 (539)
|++-+..... ..... ...+. .+.-.++++..+.....++++ -|.||+|-.+..- + ......|..
T Consensus 357 ~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-~------~~c~ftp~r 429 (1267)
T KOG0783|consen 357 IAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-R------TSCKFTPLR 429 (1267)
T ss_pred EEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-e------eeeecccce
Confidence 9987643110 00000 01110 011123556666666778888 7999999755421 0 011223333
Q ss_pred eccCCCCEEEEEEecCCceEEEEcCCcc
Q 009248 378 VDILEGMHVISVACGYGHSLVIVDRTNV 405 (539)
Q Consensus 378 v~~l~~~~v~~va~G~~ht~~l~~~g~v 405 (539)
+ ..|.+|+--.+..++++.||..
T Consensus 430 ~-----~~isdIa~~~N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 430 I-----FEISDIAWTANSLILCTRDGCW 452 (1267)
T ss_pred e-----eehhhhhhccceEEEEecCcce
Confidence 2 2466787777889999999975
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=4.1e-22 Score=212.59 Aligned_cols=303 Identities=19% Similarity=0.279 Sum_probs=199.6
Q ss_pred EEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEec--CCCEEEeec
Q 009248 59 RFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTE--DGNSLAFGW 136 (539)
Q Consensus 59 ~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~--~G~vy~wG~ 136 (539)
+++. -++...++-+.+|+||..|... .+|+-..... ...+.. ..+|++|+.|-+.++++.- +|-++.-+.
T Consensus 482 v~L~--~~RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~n--WmEL~l--~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D 553 (3738)
T KOG1428|consen 482 VDLH--FTREMAFIQARSGKVYYAGNGT--RFGLFETGNN--WMELCL--PEPIVQISVGIDTIMFRSGAGHGWIASVDD 553 (3738)
T ss_pred eecc--cchhhhhhhhcCccEEEecCcc--EEeEEccCCc--eEEecC--CCceEEEEeccchhheeeccCcceEEeccC
Confidence 3444 4488899999999999999653 3555433322 233332 2469999999998888865 454555443
Q ss_pred CCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccc
Q 009248 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (539)
Q Consensus 137 n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 216 (539)
.. ..|. ....++....+|+.+ |+..|.+-..+++| +||..|.... ..
T Consensus 554 ~k--~~~~-------~Rr~~P~n~rKIv~v-~~s~~VY~~vSenG-kifM~G~~tm----------------------~~ 600 (3738)
T KOG1428|consen 554 KK--RNGR-------LRRLVPSNRRKIVHV-CASGHVYGYVSENG-KIFMGGLHTM----------------------RV 600 (3738)
T ss_pred cc--cccc-------hhhcCCCCcceeEEE-eeeeEEEEEEccCC-eEEeecceeE----------------------Ee
Confidence 21 1111 122333334457776 45556655554888 9999997643 11
Q ss_pred cCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCcc-ccEEecccccCCCCC----------
Q 009248 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEW-VPRRVDVFQRNNVLP---------- 285 (539)
Q Consensus 217 ~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~-~p~~v~~~~~~~~~~---------- 285 (539)
......+..+.+.-|.++|.|..|.++++.+|.||+||.|..+|+|.-...... .|+.-.. ....+.|
T Consensus 601 n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~-~e~~iCP~G~HtW~~dt 679 (3738)
T KOG1428|consen 601 NVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGR-QEYQICPIGEHTWLTDT 679 (3738)
T ss_pred cchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccc-eeecccCCccceeecCC
Confidence 123445667788889999999999999999999999999999999985433322 2221111 0111110
Q ss_pred CceEEEecCCce---EEE---eCCCcEEEecCCCC---------------------------------CCCCccceeeec
Q 009248 286 PEAVISAGSVNS---SCT---AGGGQLYMWGKLKN---------------------------------NGDDWMYPKPLM 326 (539)
Q Consensus 286 ~v~~I~~G~~~s---~~l---t~~G~vy~wG~n~~---------------------------------~~~~~~~P~~v~ 326 (539)
+.+...||.... .+. .-.|.+..+|.... .......|..+.
T Consensus 680 ~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~ 759 (3738)
T KOG1428|consen 680 PSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVI 759 (3738)
T ss_pred cchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchhee
Confidence 112223332211 111 12455555554220 011122344442
Q ss_pred c---CCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcC
Q 009248 327 D---LSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDR 402 (539)
Q Consensus 327 ~---l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~ 402 (539)
. .-+.++.+|+||++|+++|. |+.||+||.|.+||||.|+. .+...|++|..+.+..+++|++|.+||+++..|
T Consensus 760 ~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt--~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~D 837 (3738)
T KOG1428|consen 760 LSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDT--LSKNTPQQVILPSDTVIVQVAAGSNHTILRAND 837 (3738)
T ss_pred eccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCcc--ccCCCcceEEcCCCCceEEEecCCCceEEEecC
Confidence 2 22457999999999999999 99999999999999999998 788999999999999999999999999999999
Q ss_pred Ccc
Q 009248 403 TNV 405 (539)
Q Consensus 403 g~v 405 (539)
|.|
T Consensus 838 GsV 840 (3738)
T KOG1428|consen 838 GSV 840 (3738)
T ss_pred CcE
Confidence 986
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-21 Score=207.70 Aligned_cols=286 Identities=20% Similarity=0.262 Sum_probs=191.1
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 95 (539)
+..+|+||.-|.. .++|+.... -..+.+... .+|++|++|-...|+.....+|-++.-|.... .|
T Consensus 494 qa~sGKvYYaGn~--t~~Gl~e~G-----~nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~--~~---- 558 (3738)
T KOG1428|consen 494 QARSGKVYYAGNG--TRFGLFETG-----NNWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVDDKKR--NG---- 558 (3738)
T ss_pred hhcCccEEEecCc--cEEeEEccC-----CceEEecCC--CceEEEEeccchhheeeccCcceEEeccCccc--cc----
Confidence 4689999999965 567776532 223444433 38999999966666666777887877663321 00
Q ss_pred CCcccceEeccCCCCcEEEEEeCCcee-EEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCee
Q 009248 96 IQRDRPTIVSELSKYKIKKAGAGRSHT-VVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFT 173 (539)
Q Consensus 96 ~~~~~P~~v~~~~~~~I~~Ia~G~~ht-~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~s 173 (539)
..-..++ ....+|+.|. +..|. -++.++|++|..|....-- ......+..+.. -|.+++.|..|+
T Consensus 559 ---~~Rr~~P-~n~rKIv~v~-~s~~VY~~vSenGkifM~G~~tm~~--------n~SSqmln~L~~~~isslAlGKsH~ 625 (3738)
T KOG1428|consen 559 ---RLRRLVP-SNRRKIVHVC-ASGHVYGYVSENGKIFMGGLHTMRV--------NVSSQMLNGLDNVMISSLALGKSHG 625 (3738)
T ss_pred ---chhhcCC-CCcceeEEEe-eeeEEEEEEccCCeEEeecceeEEe--------cchHHHhhccccceeehhhccccce
Confidence 1111222 2345688874 44555 4678999999998743210 011112222222 289999999999
Q ss_pred EEEEccCCceEEecCCCCccccCCCCCCCCcccCC-c-------------------------------------------
Q 009248 174 VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS-S------------------------------------------- 209 (539)
Q Consensus 174 ~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~-~------------------------------------------- 209 (539)
++++ .+| .||+||.|..+|+|.-........+. .
T Consensus 626 ~av~-rNG-~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~ 703 (3738)
T KOG1428|consen 626 VAVT-RNG-HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPK 703 (3738)
T ss_pred eEEE-eCC-eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCC
Confidence 9999 899 99999999999999744332110000 0
Q ss_pred ----------------------------------ccccccccCC-------ceeec---ccCCCeEEEEEeCCCeeEEEc
Q 009248 210 ----------------------------------VKLAYEAQPR-------PRAIA---ALAGETIVKVACGTNHTVAVD 245 (539)
Q Consensus 210 ----------------------------------~~~~~~~~~~-------p~~i~---~~~~~~I~~Ia~G~~hs~alt 245 (539)
..+.+..... |..+. ...+.++++|+||..|+++|-
T Consensus 704 G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~ 783 (3738)
T KOG1428|consen 704 GTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLA 783 (3738)
T ss_pred CcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEe
Confidence 0000111111 21111 112458999999999999999
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeee
Q 009248 246 SKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPL 325 (539)
Q Consensus 246 ~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v 325 (539)
+|++||+||+|.+||||+++......|++|..
T Consensus 784 sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~------------------------------------------------ 815 (3738)
T KOG1428|consen 784 SDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL------------------------------------------------ 815 (3738)
T ss_pred cCCcEEEecCCcccccCcCccccCCCcceEEc------------------------------------------------
Confidence 99999999999999999999888888887754
Q ss_pred ccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCC-CcCCCeeeccC
Q 009248 326 MDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQK-SSAMPKKVDIL 381 (539)
Q Consensus 326 ~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~-~~~~P~~v~~l 381 (539)
+++..|++|++|++|++++. ||+||+||.-..|||+..--+.. -...|.+++.+
T Consensus 816 --~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 816 --PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred --CCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCC
Confidence 44446899999999999988 99999999999999998654222 23456666554
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.27 E-value=4.7e-12 Score=90.52 Aligned_cols=50 Identities=42% Similarity=0.753 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCCccC-CCCCCCcccceEeccCCCCcEEEEEeCCceeEEE
Q 009248 76 EGRCYTWGRNERGQLG-HGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVV 125 (539)
Q Consensus 76 ~G~vy~wG~n~~GqLG-~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~L 125 (539)
||+||+||.|.+|||| .+.......|++|+.+...+|++|+||.+|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7777888999999999999999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.23 E-value=8.8e-12 Score=89.10 Aligned_cols=50 Identities=42% Similarity=0.874 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCCccC-CCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEE
Q 009248 348 DSSCISWGHAQYGELG-YGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVI 399 (539)
Q Consensus 348 ~G~vy~wG~n~~GqLG-~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l 399 (539)
||+||+||.|.+|||| .+.. .....|++|..+...+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~--~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDN--KNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSS--SEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCC--CceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 4444 788999999999999999999999999997
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.09 E-value=1.4e-10 Score=72.21 Aligned_cols=30 Identities=50% Similarity=1.022 Sum_probs=26.1
Q ss_pred EEEEEeCCCeeEEEccCCcEEEEecCCCCC
Q 009248 231 IVKVACGTNHTVAVDSKGYVYTWGFGGYGR 260 (539)
Q Consensus 231 I~~Ia~G~~hs~alt~~G~vy~wG~n~~Gq 260 (539)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.07 E-value=1.8e-10 Score=71.62 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=26.1
Q ss_pred EEEEEeCCceeEEEecCCCEEEeecCCCCC
Q 009248 112 IKKAGAGRSHTVVVTEDGNSLAFGWNKHGQ 141 (539)
Q Consensus 112 I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gq 141 (539)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.5e-12 Score=131.25 Aligned_cols=144 Identities=30% Similarity=0.479 Sum_probs=117.9
Q ss_pred CeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEe
Q 009248 47 PTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVT 126 (539)
Q Consensus 47 P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt 126 (539)
|..+..+....|.+++ ||.+|+++++..|++|+||.|.+||+|.+.......|.+++.+.+..+.+|++|..|++++.
T Consensus 5 ~~~~~~l~~k~~lq~~--cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVG--CGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALS 82 (850)
T ss_pred hHHHHHHhhhhhhhhc--cccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhh
Confidence 3444444444555665 88999999999999999999999999999554444599999999999999999999887765
Q ss_pred c-------CCCEEEeecCCCCCCCCCCCCCcccccceeecc-CceEEEEeCCCeeEEEEccCCceEEecCCCCcc
Q 009248 127 E-------DGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLV-SEVTATACGADFTVWLSSVEGASILNAGLPQYG 193 (539)
Q Consensus 127 ~-------~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~-~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~G 193 (539)
. +|.++++|....+|+|.....+...|..+.... ..+..|+||..|++++...-| ++|..|.+..|
T Consensus 83 ~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~-qsf~~~~~~sG 156 (850)
T KOG0941|consen 83 SHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLG-QSFSFGKGASG 156 (850)
T ss_pred hchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhc-ceeecccCCCC
Confidence 5 999999999999999997666666665555544 349999999999999886677 99999988876
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.9e-11 Score=127.67 Aligned_cols=144 Identities=29% Similarity=0.526 Sum_probs=114.6
Q ss_pred ceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCeeEEEEc-
Q 009248 101 PTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVWLSS- 178 (539)
Q Consensus 101 P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~s~~lt~- 178 (539)
|.++..+...+|.+++||.+|+++++..|++|.||.|.+||+|.+.......|.+++.+.. ...+|+||.+|+++++.
T Consensus 5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~ 84 (850)
T KOG0941|consen 5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSH 84 (850)
T ss_pred hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhc
Confidence 4455555566799999999999999999999999999999999984444334666666543 37889999999888771
Q ss_pred -----cCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEE-ccCCcEEE
Q 009248 179 -----VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAV-DSKGYVYT 252 (539)
Q Consensus 179 -----~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~al-t~~G~vy~ 252 (539)
.+| .++++|....||+|+.... ....|..+..+-+..+..|+||..|++++ ..-|++|.
T Consensus 85 ~~~lt~e~-~~fs~Ga~~~~q~~h~~~~--------------~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf~ 149 (850)
T KOG0941|consen 85 TVLLTDEG-KVFSFGAGSTGQLGHSLTE--------------NEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSFS 149 (850)
T ss_pred hhhcchhc-cccccCCcccccccccccc--------------cccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcceee
Confidence 388 9999999999999995442 23456666666667899999999999885 56789999
Q ss_pred EecCCCC
Q 009248 253 WGFGGYG 259 (539)
Q Consensus 253 wG~n~~G 259 (539)
+|.+..|
T Consensus 150 ~~~~~sG 156 (850)
T KOG0941|consen 150 FGKGASG 156 (850)
T ss_pred cccCCCC
Confidence 9998877
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.79 E-value=1.1 Score=42.20 Aligned_cols=110 Identities=12% Similarity=0.199 Sum_probs=57.4
Q ss_pred EEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEe--cCCceEEEeCCCcEEEecC
Q 009248 234 VACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISA--GSVNSSCTAGGGQLYMWGK 311 (539)
Q Consensus 234 Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~--G~~~s~~lt~~G~vy~wG~ 311 (539)
+.-...|-+.-+.+|+|+.|-...+ .......|.... .+.+++. -....++.++.|.+|+|-.
T Consensus 132 lhpnQteLis~dqsg~irvWDl~~~------~c~~~liPe~~~---------~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 132 LHPNQTELISGDQSGNIRVWDLGEN------SCTHELIPEDDT---------SIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ecCCcceEEeecCCCcEEEEEccCC------ccccccCCCCCc---------ceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 4445556677789999999964332 112222332222 1233333 3455667889999999987
Q ss_pred CCCCCCCccceeeeccCCCCcEEEEEcC--CcEEEEEe-CCCEEEEeCCC
Q 009248 312 LKNNGDDWMYPKPLMDLSGWNLRCMDSG--NMHHFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 312 n~~~~~~~~~P~~v~~l~~~~i~~i~~G--~~h~~~lt-~G~vy~wG~n~ 358 (539)
..........|..-...-...|.+.-.. ..|.+.-. |-.|++|-...
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 6544334444432211112234333222 22333333 77888885443
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.71 E-value=0.33 Score=56.93 Aligned_cols=291 Identities=17% Similarity=0.169 Sum_probs=147.9
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEe--------------ccC-CC-----CcEEEEE
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIV--------------SEL-SK-----YKIKKAG 116 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v--------------~~~-~~-----~~I~~Ia 116 (539)
..+.|... ..+.++.+++|+||.--..... .........|... ..| .+ .-+++=.
T Consensus 490 ~A~~VgLs--~drLFvADseGkLYsa~l~~~~---~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLS--NDRLFVADSEGKLYSADLPAAQ---DNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeec--CCeEEEEeCCCCEEeccccccc---CCCcceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 34555554 6789999999999985433221 1111111222222 111 11 1234445
Q ss_pred eCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccc-cceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCcc--
Q 009248 117 AGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEP-SPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYG-- 193 (539)
Q Consensus 117 ~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~-~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~G-- 193 (539)
.|..|+++|.+++.=|.-|+|-.-.|=+....-...+ .|. .-..+..|..-.+.|. +| +|+.|-....+
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~-----~~~~ldl~r~G~v~L~--~G-~i~~wD~ttq~W~ 636 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPA-----PHEILDLGRAGLVGLQ--DG-KIQYWDSTTQCWK 636 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCC-----hHHhhccccccceeec--cc-eEeeecCcchhhh
Confidence 6788888888888888888876544333221110000 111 1122345666777887 68 99998654321
Q ss_pred --------ccCCCCCCC-CcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCC
Q 009248 194 --------QLGHGTDNE-YNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHR 264 (539)
Q Consensus 194 --------qLG~~~~~~-~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~ 264 (539)
||-.|-... |...+..+ ....|.. .--.|+-|.+|.++++.--.-+..|.-
T Consensus 637 ~~~~kd~~~L~RG~D~~AYVLk~G~v--------k~l~i~~----~~~~~~~g~~~~~a~~~~r~~~e~G~~-------- 696 (1774)
T PF11725_consen 637 DAGVKDIDQLKRGLDGNAYVLKDGKV--------KRLSINQ----EHPSIAHGDNNVFALPQRRNKVELGDA-------- 696 (1774)
T ss_pred hccCcCHHHHhccccCCceEecCCce--------eeeeccc----CCCccccCCCcccccccccCCCCCCcc--------
Confidence 121111111 11111100 0111111 122345555555555443333322221
Q ss_pred CCCCccccEEecccccCCCCCCceE-EEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEE
Q 009248 265 EQKDEWVPRRVDVFQRNNVLPPEAV-ISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHH 343 (539)
Q Consensus 265 ~~~~~~~p~~v~~~~~~~~~~~v~~-I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~ 343 (539)
|..+.... |.. ...+.+++++|+..|+|-..-. .....|.....|++ .|++|++=..|.
T Consensus 697 ----------l~Gl~~~~----i~a~Avv~~~~fvald~qg~lt~h~k-----~g~p~~l~~~gl~G-~ik~l~lD~~~n 756 (1774)
T PF11725_consen 697 ----------LEGLEDRV----ITAFAVVNDNKFVALDDQGDLTAHQK-----PGRPVPLSRPGLSG-EIKDLALDEKQN 756 (1774)
T ss_pred ----------ccCCCcCc----ceeEEEEcCCceEEeccCCccccccC-----CCCCccCCCCCCCc-chhheeeccccc
Confidence 22222111 122 3467789999999999877542 11122222234554 799999988865
Q ss_pred -EEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCC
Q 009248 344 -FVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT 403 (539)
Q Consensus 344 -~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g 403 (539)
+|++ +|+||.-=.-..-+.-.++. ....+.|+.+ +.+.+|..+....+|.+++..++
T Consensus 757 L~Alt~~G~Lf~~~k~~WQ~~~~~~~-~~~~W~~v~l--P~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 757 LYALTSTGELFRLPKEAWQGNAEGDQ-MAAKWQKVAL--PDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eeEecCCCceeecCHHHhhCcccCCc-cccCceeccC--CCCCchhhhhcCCCCceEEEecC
Confidence 5687 99999743322211111111 1234444444 45668899999999998888666
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.10 E-value=6.3 Score=42.93 Aligned_cols=122 Identities=20% Similarity=0.170 Sum_probs=69.9
Q ss_pred EEEEEeCCc--eeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEc-cCCceEEecC
Q 009248 112 IKKAGAGRS--HTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSS-VEGASILNAG 188 (539)
Q Consensus 112 I~~Ia~G~~--ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~-~~G~~vy~wG 188 (539)
|-+++.+.. .++++...|.-.++|...-|||..-.......-...+.....|..++-..+-.+++|. +|| +|-+|-
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-KVKvWn 378 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-KVKVWN 378 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-cEEEEe
Confidence 444555533 3556666688888888888887764333222111222223456666666665555553 355 888886
Q ss_pred CCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCC
Q 009248 189 LPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGY 258 (539)
Q Consensus 189 ~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~ 258 (539)
...- -+ .-+.-..-+....++.+.-.+..+...-||.|-+|-...|
T Consensus 379 ~~Sg-fC-----------------------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 379 TQSG-FC-----------------------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ccCc-eE-----------------------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 4431 00 0000011233456777777788888888999999986654
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=93.73 E-value=11 Score=39.95 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=47.6
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEE-EeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYT-WGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~-wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~w 134 (539)
++..|++|- -.-..+|+.+|.||. -|-....+.|..= .+...|... + .++.|+.|..-.-+||.+|.||.=
T Consensus 228 ~L~qISagP-tg~VwAvt~nG~vf~R~GVsRqNp~GdsW-kdI~tP~~a--~---~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGP-TGVVWAVTENGAVFYREGVSRQNPEGDSW-KDIVTPRQA--L---EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecC-cceEEEEeeCCcEEEEecccccCCCCchh-hhccCcccc--c---ceEEEEeccceEEEEecCCcEEEE
Confidence 688999884 257889999998874 4433333333221 122233222 1 299999999999999999999863
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.96 E-value=1.7 Score=45.61 Aligned_cols=109 Identities=17% Similarity=0.230 Sum_probs=68.4
Q ss_pred eCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCC-CeeEEEEccCCceEEecCCCCcccc
Q 009248 117 AGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA-DFTVWLSSVEGASILNAGLPQYGQL 195 (539)
Q Consensus 117 ~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~-~~s~~lt~~~G~~vy~wG~n~~GqL 195 (539)
.|.....+|..+|.||.= -|.......-..-.+......+++|++|. ....+|+ .+|.-+|--|-..+.+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt-~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVT-ENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEe-eCCcEEEEecccccCCC
Confidence 445556678888888742 22222211111111111223689999999 5666788 89955566777766666
Q ss_pred CCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEE
Q 009248 196 GHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTW 253 (539)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~w 253 (539)
|... ....+|.... .++.|+.|....-|||.+|+||.-
T Consensus 262 GdsW---------------kdI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSW---------------KDIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchh---------------hhccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 5443 3344554433 389999999999999999999864
No 20
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=91.26 E-value=0.091 Score=25.61 Aligned_cols=7 Identities=100% Similarity=1.649 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 009248 532 KRGRPRK 538 (539)
Q Consensus 532 ~~~~~~~ 538 (539)
+||||+|
T Consensus 3 ~RGRP~k 9 (13)
T PF02178_consen 3 KRGRPRK 9 (13)
T ss_dssp -SS--TT
T ss_pred cCCCCcc
Confidence 5666665
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.048 Score=60.88 Aligned_cols=130 Identities=19% Similarity=0.247 Sum_probs=82.6
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCC--CCCCcccceEe-ccCCCCcEEEEEeCCceeEEEecCCCEEE
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHG--DKIQRDRPTIV-SELSKYKIKKAGAGRSHTVVVTEDGNSLA 133 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g--~~~~~~~P~~v-~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~ 133 (539)
.-++|++|.-.+..++|...|++|.|-+...--|-.. .......|..- -.+.+.+|+.+++..-..-++|++|+|-+
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 3466777766788899999999999998765433221 11222233221 23457789999999999999999999999
Q ss_pred eecCCCCCCCCCCCC--CcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCc
Q 009248 134 FGWNKHGQLGSGSIR--NEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQY 192 (539)
Q Consensus 134 wG~n~~gqlG~~~~~--~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~ 192 (539)
|=.- +|.+... .....+.+......+++..|...|+++.. .+. .||-||.--+
T Consensus 453 WlDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~-~dn-iihWcGiVPf 507 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFL-EDN-IIHWCGIVPF 507 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHh-hhc-eeeEEeeeee
Confidence 9331 2222111 11111111112223677778888888877 677 9999995433
No 22
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.33 E-value=1.9 Score=51.08 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=69.7
Q ss_pred eecccCCCeEEEEEe-CCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCC-ceEE
Q 009248 222 AIAALAGETIVKVAC-GTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV-NSSC 299 (539)
Q Consensus 222 ~i~~~~~~~I~~Ia~-G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~-~s~~ 299 (539)
.|..+.+..|..+|. +.++.++|++.|+|-..= . ...|+.++. ..+...|..|++-.. +-+|
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k-----------~g~p~~l~~---~gl~G~ik~l~lD~~~nL~A 759 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--K-----------PGRPVPLSR---PGLSGEIKDLALDEKQNLYA 759 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--C-----------CCCCccCCC---CCCCcchhheeeccccceeE
Confidence 455566556666554 778999999999876542 0 112444432 122335678888776 5688
Q ss_pred EeCCCcEEEecC-----CCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe
Q 009248 300 TAGGGQLYMWGK-----LKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA 347 (539)
Q Consensus 300 lt~~G~vy~wG~-----n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt 347 (539)
++.+|+||+.-. +..........+++....+..|..+....+|.+.+.
T Consensus 760 lt~~G~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~ 812 (1774)
T PF11725_consen 760 LTSTGELFRLPKEAWQGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQ 812 (1774)
T ss_pred ecCCCceeecCHHHhhCcccCCccccCceeccCCCCCchhhhhcCCCCceEEE
Confidence 999999997543 333322223344554456678999999999988877
No 23
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=88.00 E-value=35 Score=35.22 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=49.4
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEE--ecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVV--TEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~L--t~~G~vy~w 134 (539)
+|..+++.--.++.++=|..|.||.|=-+..--|-. .-...+. |..|....+-++++ ..||.|+.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v----------~~aHYQ~--ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV----------LSAHYQS--ITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHH----------HHhhccc--eeEEEEeCCCcEEEecCCCccEEEE
Confidence 344554432234444455788999997543211100 0111122 55555555555555 478999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCc---eEEEEeCCC
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSE---VTATACGAD 171 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~---i~~ia~G~~ 171 (539)
-.-..-+ ..+...+.|...+... |+++.+|..
T Consensus 151 ~l~~lv~-----a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 151 LLTDLVS-----ADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEeecc-----cccCCCccceeeeccCcceeEEEEecCC
Confidence 6432211 1122245555555443 777766665
No 24
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=83.71 E-value=0.63 Score=27.14 Aligned_cols=7 Identities=100% Similarity=1.649 Sum_probs=4.5
Q ss_pred CCCCCCC
Q 009248 532 KRGRPRK 538 (539)
Q Consensus 532 ~~~~~~~ 538 (539)
+||||||
T Consensus 3 kRGRPrK 9 (26)
T smart00384 3 KRGRPRK 9 (26)
T ss_pred CCCCCCC
Confidence 5666666
No 25
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=83.13 E-value=11 Score=36.01 Aligned_cols=107 Identities=21% Similarity=0.377 Sum_probs=52.8
Q ss_pred CCeeEEEccCCcEEEEe-cCC-CCCCCCC----CCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecC
Q 009248 238 TNHTVAVDSKGYVYTWG-FGG-YGRLGHR----EQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGK 311 (539)
Q Consensus 238 ~~hs~alt~~G~vy~wG-~n~-~GqLG~~----~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~ 311 (539)
..|++++- ++++|.|| .|+ +|.+..- .....+.-.+|+.+-. .+-..|++++- .++.|++|-
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vP----------gaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVP----------GARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeecC----------CccCCceeeEE-CcEEEEecC
Confidence 45888665 55899997 444 4544331 2222333333332211 23356777765 457899987
Q ss_pred CCCCCCCccceeeeccCCCCcEEEEE-------cCCcEEEEEeCCCEEEEeC
Q 009248 312 LKNNGDDWMYPKPLMDLSGWNLRCMD-------SGNMHHFVGADSSCISWGH 356 (539)
Q Consensus 312 n~~~~~~~~~P~~v~~l~~~~i~~i~-------~G~~h~~~lt~G~vy~wG~ 356 (539)
..........-..+..+.-....-|. --+.|++...++.+|++|-
T Consensus 148 ye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGG 199 (392)
T KOG4693|consen 148 YEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGG 199 (392)
T ss_pred hHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEecc
Confidence 54322211111111111111111111 1135777666899999984
No 26
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=81.89 E-value=97 Score=34.99 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=40.1
Q ss_pred CcEEEEEecCC-cEEEEeCCCCCccCCCCC-CCcccceEeccCCCCcEEEEEeCCceeEEEecCCCE--EEeec
Q 009248 67 SCHCVAVDVEG-RCYTWGRNERGQLGHGDK-IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNS--LAFGW 136 (539)
Q Consensus 67 ~~h~~~lt~~G-~vy~wG~n~~GqLG~g~~-~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~v--y~wG~ 136 (539)
+...++++.+| .|+++|++..=. .-.. .+...|..+.. .+..|..|+|-..|.+.-++++.| |.++.
T Consensus 15 G~t~i~~d~~gefi~tcgsdg~ir--~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCGSDGDIR--KWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred ceEEEEEcCCCCEEEEecCCCceE--EeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 45566666666 455666553211 1111 12245555543 466799999999999998998875 55543
No 27
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.40 E-value=5.6 Score=37.57 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=42.8
Q ss_pred CceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeec-c---------CCCCcEEEEEcCCcEEEEEe--CCCEEE
Q 009248 286 PEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLM-D---------LSGWNLRCMDSGNMHHFVGA--DSSCIS 353 (539)
Q Consensus 286 ~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~-~---------l~~~~i~~i~~G~~h~~~lt--~G~vy~ 353 (539)
+++.+.|...+.+|||.+|.+|+|--... .....|..+. . .....|+.+.......-+++ +|..|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~--k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKG--KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCC--eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 45678899999999999999999975432 1111111111 0 23346777776655544443 899998
Q ss_pred Ee
Q 009248 354 WG 355 (539)
Q Consensus 354 wG 355 (539)
|=
T Consensus 92 y~ 93 (219)
T PF07569_consen 92 YS 93 (219)
T ss_pred ec
Confidence 83
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=80.25 E-value=58 Score=31.38 Aligned_cols=64 Identities=19% Similarity=0.163 Sum_probs=33.4
Q ss_pred CceeEEEecCCCEEEeec-CC-CCCCCCCCCCCcccccceeeccCceEEEE--eCCCeeEEEEccCCceEEecCC
Q 009248 119 RSHTVVVTEDGNSLAFGW-NK-HGQLGSGSIRNEIEPSPVRCLVSEVTATA--CGADFTVWLSSVEGASILNAGL 189 (539)
Q Consensus 119 ~~ht~~Lt~~G~vy~wG~-n~-~gqlG~~~~~~~~~~~~~~~~~~~i~~ia--~G~~~s~~lt~~~G~~vy~wG~ 189 (539)
..|++++- ++++|.||- |+ .|.+..- ..+.|..-.-....|.-.. +-..|++++. .+ .+|.+|-
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~L---y~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~--gn-~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLL---YEFDPETNVWKKPEVEGFVPGARDGHSACVW--GN-QMYIFGG 147 (392)
T ss_pred cCceEEEE-cceEEEEcCccCccccccee---eeeccccccccccceeeecCCccCCceeeEE--Cc-EEEEecC
Confidence 45777764 468999984 33 3433321 1111111111122233332 3456888888 34 8999983
No 29
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.77 E-value=7.5 Score=36.70 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCceeEEEecCCCEEEeecCC
Q 009248 109 KYKIKKAGAGRSHTVVVTEDGNSLAFGWNK 138 (539)
Q Consensus 109 ~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~ 138 (539)
+.+++.+.|-..+.++||++|.+|+|-...
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 346888999999999999999999996543
No 30
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=79.53 E-value=0.27 Score=55.32 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=84.7
Q ss_pred CCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccc----eeeccCceEEEEeCCCeeEEEEccCCceE
Q 009248 109 KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSP----VRCLVSEVTATACGADFTVWLSSVEGASI 184 (539)
Q Consensus 109 ~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~----~~~~~~~i~~ia~G~~~s~~lt~~~G~~v 184 (539)
..+++.|.+-.+..++|..+|++|.|-+...--|-..-..+.....| +-....+|+.+++..--..++| .+| +|
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T-~ng-hl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIAT-ENG-HL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeee-cCC-ch
Confidence 35788888888888999999999999887654444322222222222 2222356899998888888888 888 99
Q ss_pred EecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCC
Q 009248 185 LNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGG 257 (539)
Q Consensus 185 y~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~ 257 (539)
.+|=.. +|.+.... .....+.-....++.+++..|...|.++...+..+|-||.-.
T Consensus 451 asWlDE----cgagV~fk-------------La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 451 ASWLDE----CGAGVAFK-------------LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred hhHHhh----hhhhhhhh-------------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeee
Confidence 999533 22222111 111111112234567888889999999999999999999643
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=76.76 E-value=94 Score=31.88 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=34.0
Q ss_pred ceEEEecCCceEEE--eCCCcEEEecCCCCCCCCccceeeecc-CCCC-cEEEEEcCCcEEEEEe---CCCEEEEeCC
Q 009248 287 EAVISAGSVNSSCT--AGGGQLYMWGKLKNNGDDWMYPKPLMD-LSGW-NLRCMDSGNMHHFVGA---DSSCISWGHA 357 (539)
Q Consensus 287 v~~I~~G~~~s~~l--t~~G~vy~wG~n~~~~~~~~~P~~v~~-l~~~-~i~~i~~G~~h~~~lt---~G~vy~wG~n 357 (539)
|..++...+.-++| ..+.++.+|---. ...+.+... -.+. -|.+...|.+-.++.+ |++||.|-+-
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e-----~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEE-----NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecch-----hhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc
Confidence 44554444444444 3577888886421 111111111 1111 2445555556566665 8999999654
No 32
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=76.43 E-value=26 Score=34.00 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCC-cEEEEEecCCcEEEEeCCC-CCccCCC
Q 009248 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVS-CHCVAVDVEGRCYTWGRNE-RGQLGHG 93 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~-~h~~~lt~~G~vy~wG~n~-~GqLG~g 93 (539)
+..||.||.-++. .+.+|+-. |. . -.++.+..|.|. -|.+++..||..|.+-... -+.|+..
T Consensus 69 papdG~VWft~qg-~gaiGhLd---------P~-----t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 69 PAPDGAVWFTAQG-TGAIGHLD---------PA-----T-GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred cCCCCceEEecCc-cccceecC---------CC-----C-CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCc
Confidence 4789999988764 35666542 11 1 134555555443 4888899999999886542 2222211
Q ss_pred CCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecC-CCCCCCCCCCCCcccccceeeccCceEEEEeCCCe
Q 009248 94 DKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWN-KHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF 172 (539)
Q Consensus 94 ~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n-~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~ 172 (539)
.... +..+. -.+.+-++-.+++++..|+||.-|.+ .+|.|-.........+.| --+.-.
T Consensus 133 t~ev----t~f~l-----p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpy 192 (353)
T COG4257 133 TLEV----TRFPL-----PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPY 192 (353)
T ss_pred ccce----EEeec-----ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCc
Confidence 1111 11111 13344556678999999999999864 334332221111112222 122334
Q ss_pred eEEEEccCCceEEec
Q 009248 173 TVWLSSVEGASILNA 187 (539)
Q Consensus 173 s~~lt~~~G~~vy~w 187 (539)
-+++| -+| +||..
T Consensus 193 Gi~at-pdG-svwya 205 (353)
T COG4257 193 GICAT-PDG-SVWYA 205 (353)
T ss_pred ceEEC-CCC-cEEEE
Confidence 56677 788 88875
No 33
>PLN02153 epithiospecifier protein
Probab=74.76 E-value=99 Score=31.15 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=13.8
Q ss_pred cEEEEEeCCCEEEEeCCC
Q 009248 341 MHHFVGADSSCISWGHAQ 358 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~ 358 (539)
.|++++.+++||++|-..
T Consensus 244 ~~~~~~~~~~iyv~GG~~ 261 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEV 261 (341)
T ss_pred eeeeEEECCEEEEECccc
Confidence 466666699999999753
No 34
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.50 E-value=99 Score=33.85 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=16.5
Q ss_pred EEecCCceEEEeCCCcEEEecC
Q 009248 290 ISAGSVNSSCTAGGGQLYMWGK 311 (539)
Q Consensus 290 I~~G~~~s~~lt~~G~vy~wG~ 311 (539)
+.....+..+..-++.+|+-|.
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred CccccccccEEEECCEEEEEec
Confidence 4445666777788899999886
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=72.17 E-value=6.2 Score=41.86 Aligned_cols=18 Identities=33% Similarity=0.604 Sum_probs=10.9
Q ss_pred CcccccccCCCCCCCCCC
Q 009248 522 SSQSVQGKTGKRGRPRKS 539 (539)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~ 539 (539)
....+.+-...|++||+.
T Consensus 435 ~~~~~~~~~~~~~~~~~~ 452 (456)
T PRK10590 435 GDAKPAGEQQRRRRPRKP 452 (456)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 334444555678888863
No 36
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=69.68 E-value=1.8e+02 Score=32.12 Aligned_cols=100 Identities=24% Similarity=0.344 Sum_probs=55.9
Q ss_pred EEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccc
Q 009248 115 AGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQ 194 (539)
Q Consensus 115 Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~Gq 194 (539)
|+.|..|-+++ .||.|-.|..+.- + .....|..|+...+.++++| .-+..|-.|-...
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~as------n--------kiss~Vsav~fsEdgSYfvT-~gnrHvk~wyl~~--- 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGAS------N--------KISSVVSAVAFSEDGSYFVT-SGNRHVKLWYLQI--- 195 (1080)
T ss_pred EeeccccceEE----Ehhhhhhcccccc------c--------ccceeEEEEEEccCCceeee-eeeeeEEEEEeec---
Confidence 44678888888 4788877654320 0 11244777777888888888 2222455553211
Q ss_pred cCCCCCCCCcccCCcccccccccCCcee---ecccCCCeEEEEEeCCC----eeEEEccCCcEE
Q 009248 195 LGHGTDNEYNTKDSSVKLAYEAQPRPRA---IAALAGETIVKVACGTN----HTVAVDSKGYVY 251 (539)
Q Consensus 195 LG~~~~~~~~~~~~~~~~~~~~~~~p~~---i~~~~~~~I~~Ia~G~~----hs~alt~~G~vy 251 (539)
+. . +. ...|.|-+ +..+....+..++||.. .++|||..|.|.
T Consensus 196 -~~--K--yk----------dpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv 244 (1080)
T KOG1408|consen 196 -QS--K--YK----------DPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV 244 (1080)
T ss_pred -cc--c--cc----------CCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee
Confidence 11 0 00 11222222 22344456778888887 888888866554
No 37
>PHA03098 kelch-like protein; Provisional
Probab=69.58 E-value=95 Score=33.53 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=12.1
Q ss_pred cEEEEEeCCCEEEEeCC
Q 009248 341 MHHFVGADSSCISWGHA 357 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n 357 (539)
.|+++..++++|++|-.
T Consensus 480 ~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 480 NASLCIFNNKIYVVGGD 496 (534)
T ss_pred cceEEEECCEEEEEcCC
Confidence 45555559999999854
No 38
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=68.20 E-value=1e+02 Score=28.58 Aligned_cols=57 Identities=4% Similarity=0.008 Sum_probs=30.4
Q ss_pred EEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc-eeEEEec-CCCEEEeecC
Q 009248 69 HCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS-HTVVVTE-DGNSLAFGWN 137 (539)
Q Consensus 69 h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~-ht~~Lt~-~G~vy~wG~n 137 (539)
+.++...+|.|+.|-..... ....+.. ....|..+..... ..++... +|.|+.|-..
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGE-----------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEEcCCCeEEEEEcCccc-----------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 55555668899998754321 1111111 1223666655543 3344444 8899988654
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=67.80 E-value=1e+02 Score=28.52 Aligned_cols=110 Identities=12% Similarity=0.021 Sum_probs=53.0
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~w 134 (539)
.|..++........++...+|.|+.|-..... ....+.. ....+..+..-.. +.++...+|.|+.|
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 56666654333455555568999999654221 1111111 1122434443333 45555668999998
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEcc-CCceEEecCCC
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSV-EGASILNAGLP 190 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~-~G~~vy~wG~n 190 (539)
-...... ...+......|..+.......++++.. +| .|+.|-..
T Consensus 79 ~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 123 (289)
T cd00200 79 DLETGEC-----------VRTLTGHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDVE 123 (289)
T ss_pred EcCcccc-----------eEEEeccCCcEEEEEEcCCCCEEEEecCCC-eEEEEECC
Confidence 6542200 011111122355555544433333323 66 88887654
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=66.28 E-value=2.2e+02 Score=31.72 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=62.4
Q ss_pred CCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEec-CC--CCCCeEEEEEeCCCcEEEEEe--cCCcEEEEeCCCCCc
Q 009248 15 GKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLR-PL--VGVDIRFVAAGCVSCHCVAVD--VEGRCYTWGRNERGQ 89 (539)
Q Consensus 15 ~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~-~~--~~~~i~~v~~gcG~~h~~~lt--~~G~vy~wG~n~~Gq 89 (539)
+-|.||++++-|....-|+=+-+..... ...|..+. .+ ....|+.|.-. ...-++++ .|=.+..||.+..-
T Consensus 103 ~fSPng~~fav~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k- 178 (893)
T KOG0291|consen 103 KFSPNGKFFAVGCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWS--DDSRLLVTGSRDLSARLFGVDGNK- 178 (893)
T ss_pred EECCCCcEEEEEecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEec--cCCceEEeccccceEEEEEecccc-
Confidence 3489999999998877666655533222 34444332 11 22256666633 44444444 34566667644221
Q ss_pred cCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCEEEeecC
Q 009248 90 LGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 90 LG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~vy~wG~n 137 (539)
...|..+....+ .|+.-..+ ..+.+-+.+||.|+.|..+
T Consensus 179 --------~~~~~~l~gHkd-~VvacfF~~~~~~l~tvskdG~l~~W~~~ 219 (893)
T KOG0291|consen 179 --------NLFTYALNGHKD-YVVACFFGANSLDLYTVSKDGALFVWTCD 219 (893)
T ss_pred --------ccceEeccCCCc-ceEEEEeccCcceEEEEecCceEEEEEec
Confidence 123444443333 24444333 4567788999999999987
No 41
>PHA02713 hypothetical protein; Provisional
Probab=66.26 E-value=1.8e+02 Score=31.67 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=11.9
Q ss_pred EEEEEeCCCEEEEeCC
Q 009248 342 HHFVGADSSCISWGHA 357 (539)
Q Consensus 342 h~~~lt~G~vy~wG~n 357 (539)
+.++..+|.||+.|-.
T Consensus 506 ~~~~~~~~~iyv~Gg~ 521 (557)
T PHA02713 506 LHTILHDNTIMMLHCY 521 (557)
T ss_pred ceeEEECCEEEEEeee
Confidence 4555559999999853
No 42
>PLN02153 epithiospecifier protein
Probab=64.74 E-value=1.6e+02 Score=29.60 Aligned_cols=18 Identities=11% Similarity=-0.059 Sum_probs=12.8
Q ss_pred CCeeEEEEccCCceEEecCCC
Q 009248 170 ADFTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 170 ~~~s~~lt~~~G~~vy~wG~n 190 (539)
..|++++. ++ +||++|--
T Consensus 129 ~~~~~~~~--~~-~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMASD--EN-HVYVFGGV 146 (341)
T ss_pred eeeEEEEE--CC-EEEEECCc
Confidence 35666665 67 99999843
No 43
>PHA02713 hypothetical protein; Provisional
Probab=64.54 E-value=1.4e+02 Score=32.50 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=13.2
Q ss_pred CCceeEEEecCCCEEEeecC
Q 009248 118 GRSHTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 118 G~~ht~~Lt~~G~vy~wG~n 137 (539)
...+..+..-+|+||++|-.
T Consensus 341 ~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhhceeEEEECCEEEEECCc
Confidence 33344445567899999964
No 44
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=64.10 E-value=3.1 Score=49.25 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=8.2
Q ss_pred CceEEEeCCCcEEEecC
Q 009248 295 VNSSCTAGGGQLYMWGK 311 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~ 311 (539)
.+.-+...+|.+|-.|.
T Consensus 63 ~~~~~~~~~g~~y~~~~ 79 (2849)
T PTZ00415 63 NKKECFDKNGGIYNLGD 79 (2849)
T ss_pred CcccccccCCCEEeccC
Confidence 33344445555555443
No 45
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=63.33 E-value=3.7 Score=38.78 Aligned_cols=8 Identities=50% Similarity=0.779 Sum_probs=3.6
Q ss_pred cEEEEecC
Q 009248 249 YVYTWGFG 256 (539)
Q Consensus 249 ~vy~wG~n 256 (539)
-+|+.|..
T Consensus 87 g~~~tGl~ 94 (314)
T PF06524_consen 87 GVFTTGLG 94 (314)
T ss_pred ceeecccc
Confidence 34554443
No 46
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=62.00 E-value=3.6 Score=45.64 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=5.2
Q ss_pred CCCeeEEEccCCc
Q 009248 237 GTNHTVAVDSKGY 249 (539)
Q Consensus 237 G~~hs~alt~~G~ 249 (539)
+.+|.++=+-.|+
T Consensus 1112 ~~~hL~vG~~~Ge 1124 (1516)
T KOG1832|consen 1112 GTNHLAVGSHAGE 1124 (1516)
T ss_pred CCceEEeeeccce
Confidence 3344443333443
No 47
>KOG4501 consensus Transcription coactivator complex, P100 component [Transcription]
Probab=61.86 E-value=7.9 Score=40.51 Aligned_cols=13 Identities=62% Similarity=1.142 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 009248 506 GKGTGRGRGRPTS 518 (539)
Q Consensus 506 ~~~~~~~~~~~~~ 518 (539)
+++.+|+|||+.+
T Consensus 670 s~~t~r~Rg~kea 682 (707)
T KOG4501|consen 670 SNGTGRGRGRKEA 682 (707)
T ss_pred ccccccccccccc
Confidence 3444444444444
No 48
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=61.81 E-value=2.6e+02 Score=31.05 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCc----eeEEEecCCCEEEeec
Q 009248 108 SKYKIKKAGAGRS----HTVVVTEDGNSLAFGW 136 (539)
Q Consensus 108 ~~~~I~~Ia~G~~----ht~~Lt~~G~vy~wG~ 136 (539)
....+..|+||.. .+++||..|.|.-|-.
T Consensus 216 r~n~f~avaCg~gicAestfait~qGhLvEFSs 248 (1080)
T KOG1408|consen 216 RFNEFLAVACGVGICAESTFAITAQGHLVEFSS 248 (1080)
T ss_pred ccchhhhhhhcCcccccceEEEecccceeeech
Confidence 3445889999988 8999999999987743
No 49
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=61.18 E-value=19 Score=22.66 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.6
Q ss_pred CeEEEEEeCC-CeeEEEccCCcEEEE
Q 009248 229 ETIVKVACGT-NHTVAVDSKGYVYTW 253 (539)
Q Consensus 229 ~~I~~Ia~G~-~hs~alt~~G~vy~w 253 (539)
..+++|++|. ....+++.+|.||..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3689999999 888999999999963
No 50
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=59.78 E-value=21 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.2
Q ss_pred cEEEEEeCC-ceeEEEecCCCEEEe
Q 009248 111 KIKKAGAGR-SHTVVVTEDGNSLAF 134 (539)
Q Consensus 111 ~I~~Ia~G~-~ht~~Lt~~G~vy~w 134 (539)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 599999999 888899999999864
No 51
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=59.34 E-value=3.7 Score=45.19 Aligned_cols=14 Identities=14% Similarity=0.489 Sum_probs=7.8
Q ss_pred CceEEEEcCCcccc
Q 009248 394 GHSLVIVDRTNVGE 407 (539)
Q Consensus 394 ~ht~~l~~~g~v~~ 407 (539)
..-++|.++|.+..
T Consensus 96 ~~~v~v~ddg~~~~ 109 (622)
T PF02724_consen 96 NDQVIVFDDGDIEE 109 (622)
T ss_pred CCcEEEEECCChhh
Confidence 34455666776433
No 52
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=58.87 E-value=1.1e+02 Score=29.32 Aligned_cols=48 Identities=21% Similarity=0.370 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCeeEEEccCCcEEEEecCCCCC-CCCCCCCCccccEEec
Q 009248 228 GETIVKVACGTNHTVAVDSKGYVYTWGFGGYGR-LGHREQKDEWVPRRVD 276 (539)
Q Consensus 228 ~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~Gq-LG~~~~~~~~~p~~v~ 276 (539)
+.+|-.++.-..|-+ .-.+|.||+|-+|+.-. ++....-....|.++.
T Consensus 62 dgpiy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 62 DGPIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred CCCeeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 346777777766655 44569999999998655 4443333344555554
No 53
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=57.94 E-value=2e+02 Score=28.56 Aligned_cols=88 Identities=14% Similarity=0.177 Sum_probs=60.9
Q ss_pred eeccCCCCc--EEEEEcCCcEEEE--Ee-CCCEEEEeCCCCCccCCCCCC--------CCCcCCCeeeccCCCCEEEEEE
Q 009248 324 PLMDLSGWN--LRCMDSGNMHHFV--GA-DSSCISWGHAQYGELGYGPYG--------QKSSAMPKKVDILEGMHVISVA 390 (539)
Q Consensus 324 ~v~~l~~~~--i~~i~~G~~h~~~--lt-~G~vy~wG~n~~GqLG~g~~~--------~~~~~~P~~v~~l~~~~v~~va 390 (539)
+++.|.+.. |...+...+..=+ ++ ||..-.|-.+-...++..+.. ...-..|.++..-+..++..++
T Consensus 270 rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s 349 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS 349 (420)
T ss_pred hhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee
Confidence 444455433 5555555554433 44 999999999887777765542 2234567777766677899999
Q ss_pred ecCCceEEEEcCCcccccccc
Q 009248 391 CGYGHSLVIVDRTNVGERLDQ 411 (539)
Q Consensus 391 ~G~~ht~~l~~~g~v~~~~~~ 411 (539)
.|..--++.+++|+.++.+..
T Consensus 350 ~gs~l~~~~se~g~~~~~~e~ 370 (420)
T KOG2096|consen 350 FGSDLKVFASEDGKDYPELED 370 (420)
T ss_pred cCCceEEEEcccCccchhHHH
Confidence 999999999999987665544
No 54
>KOG2270 consensus Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=56.53 E-value=1.4 Score=44.62 Aligned_cols=31 Identities=35% Similarity=0.442 Sum_probs=13.5
Q ss_pred ccchhhccccCCCchhhhhccccCCCCChhh
Q 009248 444 NNSKKRKKSKDSSEEEEEEENSDYESDDSEE 474 (539)
Q Consensus 444 ~~~kk~k~~~~~~~~e~e~d~~~~e~~~~~~ 474 (539)
+..+..+.....+++++|+|+++.+++.+++
T Consensus 432 d~~~~e~~~~~~~~~~ee~dgs~~~~~gs~E 462 (520)
T KOG2270|consen 432 DLAKHEKDDSLGEDSVEEEDGSEAESEGSEE 462 (520)
T ss_pred cccccccCcccccccccccccccccccCchh
Confidence 3333444444444444555555434433333
No 55
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=56.44 E-value=4.6 Score=44.84 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=5.9
Q ss_pred EeCCCeeEEEEccCC
Q 009248 167 ACGADFTVWLSSVEG 181 (539)
Q Consensus 167 a~G~~~s~~lt~~~G 181 (539)
+.+.+|.++=+ ..|
T Consensus 1110 s~~~~hL~vG~-~~G 1123 (1516)
T KOG1832|consen 1110 SGGTNHLAVGS-HAG 1123 (1516)
T ss_pred ecCCceEEeee-ccc
Confidence 33444444433 444
No 56
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=56.10 E-value=38 Score=33.56 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred CCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeC
Q 009248 18 KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGR 84 (539)
Q Consensus 18 ~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~ 84 (539)
+.|+||+|---.. ++...|+......+..|++.+++--....+++++++.||.|-.
T Consensus 327 q~g~v~vwdL~~~-----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN-----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCC-----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 6788999974322 2235667777778889999998855677888899999999963
No 57
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=55.48 E-value=2.5e+02 Score=28.81 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=71.2
Q ss_pred eEEEEeCCC-eeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCC-e
Q 009248 163 VTATACGAD-FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN-H 240 (539)
Q Consensus 163 i~~ia~G~~-~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~-h 240 (539)
+..|..|.. |..+..+.+|..+|+.+.. |.+ ..|.......|..|..|.. +
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-------------------------sviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-------------------------SVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-------------------------EEEETTSSSEEEEEE-SSEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-------------------------EEEECCcccEEEEEecCCCcc
Confidence 566766554 5544333677678887532 222 1233333445777877765 7
Q ss_pred eEEEccCCcEEEEecCCCCCCCCCCCCCccccE-Eecccc--cCCCCCCceEEEecCC---ceEEEeCCCcEEEecCCCC
Q 009248 241 TVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPR-RVDVFQ--RNNVLPPEAVISAGSV---NSSCTAGGGQLYMWGKLKN 314 (539)
Q Consensus 241 s~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~-~v~~~~--~~~~~~~v~~I~~G~~---~s~~lt~~G~vy~wG~n~~ 314 (539)
.++++.||+...-++...+++-.-+... ..|. .|+... .....+.+..|.+... +.+.+.+.++||+--...
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d- 159 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD- 159 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT-
T ss_pred eEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc-
Confidence 7889999986665654444444322221 1222 222111 0001223445544332 445567778888763211
Q ss_pred CCCCccceeeeccCCCCcEEEEEcCCc-EEEEEe-CCCEEEEeCCCCCccC
Q 009248 315 NGDDWMYPKPLMDLSGWNLRCMDSGNM-HHFVGA-DSSCISWGHAQYGELG 363 (539)
Q Consensus 315 ~~~~~~~P~~v~~l~~~~i~~i~~G~~-h~~~lt-~G~vy~wG~n~~GqLG 363 (539)
+....+..+..|.. |=+.++ +++.|.-+.|....++
T Consensus 160 -------------~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 160 -------------PKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp -------------SSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred -------------ccccceeeecccccccccccCcccceeeecccccceeE
Confidence 11113344545543 555556 6666555554444443
No 58
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.93 E-value=1.3e+02 Score=35.65 Aligned_cols=166 Identities=11% Similarity=0.094 Sum_probs=78.8
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCC-CCCccCCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRN-ERGQLGHGDK 95 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n-~~GqLG~g~~ 95 (539)
.-|..||.|=.+..+.+-.-.+ .+..+..=..+.+-+++-+..|. |.++|..--+|+..|-- +..+.+....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~Iq------hlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQ------HLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhh------eeEEecccceEEEEEEEeccccCccccc
Confidence 5788999999998777665432 11112222222333444444443 89999999999999932 1222222211
Q ss_pred CCcccceEeccCCCCcEEEEEeCCceeEEEe-cCCCEEEe----ecCCCCC-CCC----CCCCCcccccceeec---cCc
Q 009248 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVT-EDGNSLAF----GWNKHGQ-LGS----GSIRNEIEPSPVRCL---VSE 162 (539)
Q Consensus 96 ~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt-~~G~vy~w----G~n~~gq-lG~----~~~~~~~~~~~~~~~---~~~ 162 (539)
... -.|. ..+..|..|++-.+-=+|++ .||.||-. +.+.+++ +-. ........|+..... ...
T Consensus 169 ~~~---~~i~-~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp 244 (1311)
T KOG1900|consen 169 NTS---FKIS-VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP 244 (1311)
T ss_pred ccc---eeee-cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence 111 1111 12444555554333333333 44444322 2222222 100 000112233322333 345
Q ss_pred eEEEEeCCCeeEEEEc-cCCceEEecCCCCccc
Q 009248 163 VTATACGADFTVWLSS-VEGASILNAGLPQYGQ 194 (539)
Q Consensus 163 i~~ia~G~~~s~~lt~-~~G~~vy~wG~n~~Gq 194 (539)
|.+|+......+..+- +.| .|-+|=....|+
T Consensus 245 I~qi~ID~SR~IlY~lsek~-~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 245 IRQITIDNSRNILYVLSEKG-TVSAYDIGGNGL 276 (1311)
T ss_pred ceeeEeccccceeeeeccCc-eEEEEEccCCCc
Confidence 9999998887765442 445 665554443343
No 59
>PHA03098 kelch-like protein; Provisional
Probab=53.57 E-value=88 Score=33.79 Aligned_cols=12 Identities=8% Similarity=0.119 Sum_probs=9.4
Q ss_pred CCCceEEEecCC
Q 009248 17 EKGGELLFCGST 28 (539)
Q Consensus 17 ~~~G~vy~wG~n 28 (539)
.-+|+||++|-.
T Consensus 340 ~~~~~lyv~GG~ 351 (534)
T PHA03098 340 VFNNRIYVIGGI 351 (534)
T ss_pred EECCEEEEEeCC
Confidence 457999999954
No 60
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=50.49 E-value=4.4e+02 Score=30.24 Aligned_cols=169 Identities=12% Similarity=0.074 Sum_probs=81.9
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccc--eEeccCCCCcEEEEEeC-----CceeEEEecC
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAG-----RSHTVVVTED 128 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P--~~v~~~~~~~I~~Ia~G-----~~ht~~Lt~~ 128 (539)
..+..+...-...+.+++|+.|++|..=.. +|........-.| ..+....+.+|+.+.+- ....+++|.+
T Consensus 535 D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~ 611 (800)
T TIGR01063 535 DFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKN 611 (800)
T ss_pred CeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCC
Confidence 345555444446678999999999998322 2222111111111 12333456677776662 2356788999
Q ss_pred CCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEE-Ee-CCCeeEEEEccCCceEEecCCCCccccCCCCCCCCccc
Q 009248 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTAT-AC-GADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTK 206 (539)
Q Consensus 129 G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~i-a~-G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~ 206 (539)
|.+.-.-.+.+-..... ......+. ....++.+ .| ...+.+++| +.| .+|.+-....-..|....
T Consensus 612 GyiKRi~l~~~~~~~r~----G~~aiklk-e~D~lv~v~~~~~~d~lll~T-s~G-r~~r~~v~eIp~~gr~~~------ 678 (800)
T TIGR01063 612 GVVKKTSLTEFSNIRSN----GIIAIKLD-DGDELISVRLTSGDDEVMLGS-KNG-KAVRFPEEDVRPMGRAAR------ 678 (800)
T ss_pred CEEEEEEhHHhhhhccC----CcccccCC-CCCEEEEEEEeCCCCEEEEEE-CCC-cEEEEEhhhcCCcCCCCC------
Confidence 98876544333211000 00000000 01223333 22 334566677 788 888765443333222111
Q ss_pred CCcccccccccCCceeeccc-CCCeEEEEEeC--CCeeEEEccCCcEEEE
Q 009248 207 DSSVKLAYEAQPRPRAIAAL-AGETIVKVACG--TNHTVAVDSKGYVYTW 253 (539)
Q Consensus 207 ~~~~~~~~~~~~~p~~i~~~-~~~~I~~Ia~G--~~hs~alt~~G~vy~w 253 (539)
...+..+ .+++|+.+.+- ..+.+++|+.|.+.-.
T Consensus 679 -------------Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 679 -------------GVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred -------------CeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 1111122 34566666542 2356677777766654
No 61
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=49.53 E-value=1.2e+02 Score=30.24 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=12.0
Q ss_pred ceeEEEecCCCEEEeecC
Q 009248 120 SHTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 120 ~ht~~Lt~~G~vy~wG~n 137 (539)
.|++++ -+++||.+|-.
T Consensus 116 ~~~~~~-~~~~iYv~GG~ 132 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGN 132 (323)
T ss_pred CceEEE-ECCEEEEEeCc
Confidence 455554 46899999874
No 62
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=46.03 E-value=2.3e+02 Score=31.00 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=30.0
Q ss_pred EEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEE---EEEcCCcEEEEEe-CCCEEEEeC
Q 009248 299 CTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLR---CMDSGNMHHFVGA-DSSCISWGH 356 (539)
Q Consensus 299 ~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~---~i~~G~~h~~~lt-~G~vy~wG~ 356 (539)
+..-++.||+.|-... .....-....++...... .+.....+..+.. ++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~--~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG--TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC--CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 6667889999997554 111111111112211222 2444555554444 999999886
No 63
>PLN02193 nitrile-specifier protein
Probab=45.89 E-value=3.9e+02 Score=28.33 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=13.4
Q ss_pred cEEEEEeCCCEEEEeCCC
Q 009248 341 MHHFVGADSSCISWGHAQ 358 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~ 358 (539)
.|+++..+++||++|-..
T Consensus 370 ~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 370 VFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eeEEEEECCEEEEECCcc
Confidence 466666699999998643
No 64
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=45.58 E-value=3.8e+02 Score=28.03 Aligned_cols=155 Identities=14% Similarity=0.184 Sum_probs=75.4
Q ss_pred CceEEEEeCCCeeEEEEc-cCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCC
Q 009248 161 SEVTATACGADFTVWLSS-VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN 239 (539)
Q Consensus 161 ~~i~~ia~G~~~s~~lt~-~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~ 239 (539)
..+..+++...-.+++-. ..| .||.|=.+. |.|= .+.-... ..|.++....+
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g-~lYlWelss-G~LL-----------------------~v~~aHY--Q~ITcL~fs~d 134 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISG-NLYLWELSS-GILL-----------------------NVLSAHY--QSITCLKFSDD 134 (476)
T ss_pred cceeeeecCCCceEEEeecccC-cEEEEEecc-ccHH-----------------------HHHHhhc--cceeEEEEeCC
Confidence 346666666655555553 567 999997654 2220 0000111 23555555444
Q ss_pred eeEEE--ccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCC--ceEEE--eCCCcEEEecCCC
Q 009248 240 HTVAV--DSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV--NSSCT--AGGGQLYMWGKLK 313 (539)
Q Consensus 240 hs~al--t~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~--~s~~l--t~~G~vy~wG~n~ 313 (539)
-++++ ..||.|++|=.-. +-.......|..+-.|..... +|+++.+|.. .+.++ ..|..+-+|--..
T Consensus 135 gs~iiTgskDg~V~vW~l~~-----lv~a~~~~~~~p~~~f~~Htl--sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~ 207 (476)
T KOG0646|consen 135 GSHIITGSKDGAVLVWLLTD-----LVSADNDHSVKPLHIFSDHTL--SITDLQIGSGGTNARLYTASEDRTIKLWDLSL 207 (476)
T ss_pred CcEEEecCCCccEEEEEEEe-----ecccccCCCccceeeeccCcc--eeEEEEecCCCccceEEEecCCceEEEEEecc
Confidence 44444 5799999995332 111122224444545555433 3566665554 33333 3456666664321
Q ss_pred C-CCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEe
Q 009248 314 N-NGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWG 355 (539)
Q Consensus 314 ~-~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG 355 (539)
. .-....+|..+ ..+.|.-+..++++=+ +|.+|..=
T Consensus 208 g~LLlti~fp~si------~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 208 GVLLLTITFPSSI------KAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred ceeeEEEecCCcc------eeEEEcccccEEEecCCcceEEeee
Confidence 1 01111122211 2334445666666666 78887653
No 65
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.69 E-value=4.6e+02 Score=31.40 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=80.5
Q ss_pred EEEecCCcEEEEeCCCCCccCCCCCCCcc-cc-eEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCC-CCCCCCCC
Q 009248 71 VAVDVEGRCYTWGRNERGQLGHGDKIQRD-RP-TIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKH-GQLGSGSI 147 (539)
Q Consensus 71 ~~lt~~G~vy~wG~n~~GqLG~g~~~~~~-~P-~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~-gqlG~~~~ 147 (539)
+-+|.|.+||.|-.+..+++-.-+..... .- .++..-+++-+-.| .|.++|..--+|+..|-... .+.+....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccc
Confidence 34789999999999887766433221110 00 01111112222222 48999988888988885322 22222211
Q ss_pred CCcccccceeeccCceEEEEe-CCCeeEEEEccCCceEEecCCCCc-----cccCCCCCCC---CcccCCcccccccccC
Q 009248 148 RNEIEPSPVRCLVSEVTATAC-GADFTVWLSSVEGASILNAGLPQY-----GQLGHGTDNE---YNTKDSSVKLAYEAQP 218 (539)
Q Consensus 148 ~~~~~~~~~~~~~~~i~~ia~-G~~~s~~lt~~~G~~vy~wG~n~~-----GqLG~~~~~~---~~~~~~~~~~~~~~~~ 218 (539)
... -+|+. |.+-+++..+++| +||.-|.+.. -|...+.... .......+ -...
T Consensus 169 ~~~-------------~~i~~dg~~V~~I~~t~nG-RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~----ls~l 230 (1311)
T KOG1900|consen 169 NTS-------------FKISVDGVSVNCITYTENG-RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV----LSSL 230 (1311)
T ss_pred ccc-------------eeeecCCceEEEEEeccCC-cEEEeecCCCEEEEEEeccCchhhcccccccCchhH----HHHh
Confidence 111 22222 3333333322455 6665554420 0111111110 00000000 0111
Q ss_pred Cceee--cccCCCeEEEEEeCCCeeEE--EccCCcEEEEecCCCCCCC
Q 009248 219 RPRAI--AALAGETIVKVACGTNHTVA--VDSKGYVYTWGFGGYGRLG 262 (539)
Q Consensus 219 ~p~~i--~~~~~~~I~~Ia~G~~hs~a--lt~~G~vy~wG~n~~GqLG 262 (539)
.|..+ +.....+|.+|+......+. +++.|.|=+|-....|+-+
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGG 278 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccc
Confidence 23321 22335689999998876654 6778888888666655544
No 66
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=44.56 E-value=17 Score=38.24 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=10.7
Q ss_pred CcEEEEEecCCcEEEEe
Q 009248 67 SCHCVAVDVEGRCYTWG 83 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG 83 (539)
.+-.-+.+.+|-+|-++
T Consensus 59 ~~~LrV~tk~g~~~~~~ 75 (615)
T KOG0526|consen 59 GYGLRVFTKDGGVYRFD 75 (615)
T ss_pred ccceEEEccCCceEEec
Confidence 44455667777777665
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.47 E-value=5.2e+02 Score=29.27 Aligned_cols=118 Identities=18% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCCCceEEEecCCCCCCCCCCC----CCC-CCC-ccCCeEec-CCCCCCeEEEEEeCCCcEEEEEecCCcEEE------E
Q 009248 16 KEKGGELLFCGSTCWDAVGRRK----GAL-DGN-LVSPTRLR-PLVGVDIRFVAAGCVSCHCVAVDVEGRCYT------W 82 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~----~~~-~~~-~~~P~~i~-~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~------w 82 (539)
.-.|+.||+|=.+....+-..- ... .+. ....+.+. ......|..|.+...+.|.+++-..| |++ |
T Consensus 38 ~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~ 116 (717)
T PF10168_consen 38 ACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRW 116 (717)
T ss_pred EEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEecccc
Confidence 4578999999777654433321 000 010 11111111 22334788888776666665555555 333 6
Q ss_pred eCCCCCccCCCCCCCcccceEeccC---CCCcEEEEE-----eCCceeEEEecCCCEEEe
Q 009248 83 GRNERGQLGHGDKIQRDRPTIVSEL---SKYKIKKAG-----AGRSHTVVVTEDGNSLAF 134 (539)
Q Consensus 83 G~n~~GqLG~g~~~~~~~P~~v~~~---~~~~I~~Ia-----~G~~ht~~Lt~~G~vy~w 134 (539)
|.+.+-+.|.....-+..|.--..+ ....|.++. ....|.++||+|+.+-.+
T Consensus 117 g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 117 GKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred CccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 7654433333222112222222222 234677775 346899999999976554
No 68
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=44.03 E-value=30 Score=36.91 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=20.4
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCcccccccC-CCCCCC
Q 009248 492 GRGRGKAANKLSGDGKGTGRGRGRPTSTNKSSQSVQGKT-GKRGRP 536 (539)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 536 (539)
+|++|..+.+++ .++..+-|++|+.......|++..- -.||||
T Consensus 154 er~rP~~R~rsr--er~ls~~~~gprs~~r~~~ss~~~~p~p~~~~ 197 (1027)
T KOG3580|consen 154 ERGRPHERARSR--ERDLSRDRRGPRSRSREHPSSRSPSPEPRGRP 197 (1027)
T ss_pred ccCCcccccccc--ccccccCCCCCcccccccccCCCCCCCccCCC
Confidence 455554443333 3334444555655555555554432 245555
No 69
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=43.95 E-value=3e+02 Score=26.46 Aligned_cols=145 Identities=15% Similarity=0.168 Sum_probs=69.8
Q ss_pred EEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCC--CCcEEEEE--eCCceeEEEecCCCEEEeecCCCCCCCCC
Q 009248 70 CVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS--KYKIKKAG--AGRSHTVVVTEDGNSLAFGWNKHGQLGSG 145 (539)
Q Consensus 70 ~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~I~~Ia--~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~ 145 (539)
.+-||.+++..+-+.|.+=.|-.- ....|.++..+. ...|..|. |-..-.+-=.+||.+-.|-... +...
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD~---~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~q 118 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYDL---NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSCQ 118 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEEc---cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cccc
Confidence 445666776666665554443211 112343333332 22344443 3332333336788888886533 1110
Q ss_pred CCCCcccccceeeccCceEEEEeCCCeeEE-EEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeec
Q 009248 146 SIRNEIEPSPVRCLVSEVTATACGADFTVW-LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA 224 (539)
Q Consensus 146 ~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~-lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 224 (539)
.. ......|..|.--.+.+=+ ..+.+| .|++|-....- - ..++.|..
T Consensus 119 R~---------~~~~spVn~vvlhpnQteLis~dqsg-~irvWDl~~~~------c--------------~~~liPe~-- 166 (311)
T KOG0315|consen 119 RN---------YQHNSPVNTVVLHPNQTELISGDQSG-NIRVWDLGENS------C--------------THELIPED-- 166 (311)
T ss_pred hh---------ccCCCCcceEEecCCcceEEeecCCC-cEEEEEccCCc------c--------------ccccCCCC--
Confidence 00 0011223344433333322 223667 99999644320 0 11222322
Q ss_pred ccCCCeEEEEEeCCC--eeEEEccCCcEEEEec
Q 009248 225 ALAGETIVKVACGTN--HTVAVDSKGYVYTWGF 255 (539)
Q Consensus 225 ~~~~~~I~~Ia~G~~--hs~alt~~G~vy~wG~ 255 (539)
...|.+++.... -.+++++.|++|+|-.
T Consensus 167 ---~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 167 ---DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ---CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 245666666554 4566889999999964
No 70
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=43.40 E-value=27 Score=22.70 Aligned_cols=18 Identities=39% Similarity=0.746 Sum_probs=15.2
Q ss_pred eeEEEccCCcEEEEecCC
Q 009248 240 HTVAVDSKGYVYTWGFGG 257 (539)
Q Consensus 240 hs~alt~~G~vy~wG~n~ 257 (539)
+.++++.+|.||+.|.-.
T Consensus 16 ~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 16 NGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEECCCCCEEEEEeec
Confidence 567899999999999643
No 71
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.26 E-value=4e+02 Score=27.71 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=39.5
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEec--cCCCCcEEEEEeCCceeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS--ELSKYKIKKAGAGRSHTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~--~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~w 134 (539)
+|+.+.-. ...+.++|.++|.++.+- -.|.. ....+..+. .....+|-.+..+.+-.++||.++++|..
T Consensus 82 ~iv~~~wt-~~e~LvvV~~dG~v~vy~--~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v 152 (410)
T PF04841_consen 82 RIVGMGWT-DDEELVVVQSDGTVRVYD--LFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVV 152 (410)
T ss_pred CEEEEEEC-CCCeEEEEEcCCEEEEEe--CCCce------eechhhhccccCcccccccccccCCCCEEEECCCCeEEEE
Confidence 44444432 245788889999888863 33332 111122221 11122344445565668899999999987
Q ss_pred e
Q 009248 135 G 135 (539)
Q Consensus 135 G 135 (539)
=
T Consensus 153 ~ 153 (410)
T PF04841_consen 153 N 153 (410)
T ss_pred e
Confidence 3
No 72
>PHA02790 Kelch-like protein; Provisional
Probab=43.21 E-value=3e+02 Score=29.38 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.9
Q ss_pred cEEEEEeCCCEEEEeC
Q 009248 341 MHHFVGADSSCISWGH 356 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~ 356 (539)
.|.+++.+|+||+.|-
T Consensus 439 ~~~~~v~~~~IYviGG 454 (480)
T PHA02790 439 NPELIIVDNKLLLIGG 454 (480)
T ss_pred ccEEEEECCEEEEECC
Confidence 3455556999999985
No 73
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=41.24 E-value=4.8e+02 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.5
Q ss_pred cEEEEEcCCcEEEEEeCCCEEEEeCCCCCccCCCCCCCCCcCCCeeecc
Q 009248 332 NLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI 380 (539)
Q Consensus 332 ~i~~i~~G~~h~~~lt~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~ 380 (539)
+|++++.++.|.++.+..+||.+- .....+|+.|+.
T Consensus 323 rv~k~sL~Y~hLvvaTs~qvyiys-------------~knwntpiiidg 358 (737)
T KOG1524|consen 323 RVVKFSLGYGHLVVATSLQVYIYS-------------EKNWNTPIIIDG 358 (737)
T ss_pred ceeeeeeceeEEEEEeccEEEEEe-------------cCCccCcEEEec
Confidence 799999999999999999999873 244566666654
No 74
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=39.84 E-value=78 Score=18.98 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.5
Q ss_pred CeEEEEEeCCCeeEEEccCCcEE
Q 009248 229 ETIVKVACGTNHTVAVDSKGYVY 251 (539)
Q Consensus 229 ~~I~~Ia~G~~hs~alt~~G~vy 251 (539)
+.|..|++|....++.|+.+-|-
T Consensus 2 E~i~aia~g~~~vavaTS~~~lR 24 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLR 24 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEE
Confidence 57999999999999999887553
No 75
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=39.60 E-value=2.1e+02 Score=27.40 Aligned_cols=118 Identities=16% Similarity=0.076 Sum_probs=60.1
Q ss_pred ccccccCCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCe----EEEEEeCCCcEEEEEecCCcEEEEeC
Q 009248 9 MVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDI----RFVAAGCVSCHCVAVDVEGRCYTWGR 84 (539)
Q Consensus 9 ~~~~~~~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i----~~v~~gcG~~h~~~lt~~G~vy~wG~ 84 (539)
.=|+....-.||+|...|-+..|.-+.. ...|.... ..... ..++.+ -+|-++.+..||+|++.|-
T Consensus 67 ~FCSgg~~L~dG~ll~tGG~~~G~~~ir-------~~~p~~~~--~~~~w~e~~~~m~~~-RWYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 67 TFCSGGAFLPDGRLLQTGGDNDGNKAIR-------IFTPCTSD--GTCDWTESPNDMQSG-RWYPTATTLPDGRVLIVGG 136 (243)
T ss_pred CcccCcCCCCCCCEEEeCCCCccccceE-------EEecCCCC--CCCCceECcccccCC-CccccceECCCCCEEEEeC
Confidence 3467777788999999997655333222 12222100 00111 113322 2678888999999999994
Q ss_pred CCCCccCCCCC-CCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecC
Q 009248 85 NERGQLGHGDK-IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 85 n~~GqLG~g~~-~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n 137 (539)
...--.-.-.. .....+..+..+.... .......+=.++|.-+|+||.|+.+
T Consensus 137 ~~~~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 137 SNNPTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred cCCCcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEEEcC
Confidence 43100000000 0011122222222210 1222334447888899999999865
No 76
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=39.53 E-value=17 Score=39.12 Aligned_cols=6 Identities=50% Similarity=0.695 Sum_probs=2.2
Q ss_pred CCChhh
Q 009248 469 SDDSEE 474 (539)
Q Consensus 469 ~~~~~~ 474 (539)
++++++
T Consensus 911 ~s~~~~ 916 (952)
T KOG1834|consen 911 SSDSDS 916 (952)
T ss_pred cccccc
Confidence 333333
No 77
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.60 E-value=32 Score=31.01 Aligned_cols=6 Identities=17% Similarity=0.473 Sum_probs=2.4
Q ss_pred EcCCcc
Q 009248 400 VDRTNV 405 (539)
Q Consensus 400 ~~~g~v 405 (539)
++++.+
T Consensus 82 ~eDDS~ 87 (184)
T KOG4032|consen 82 VEDDSL 87 (184)
T ss_pred ccCCCH
Confidence 344443
No 78
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=38.40 E-value=2e+02 Score=30.52 Aligned_cols=14 Identities=29% Similarity=0.814 Sum_probs=11.5
Q ss_pred EEEEEecCCcEEEEe
Q 009248 69 HCVAVDVEGRCYTWG 83 (539)
Q Consensus 69 h~~~lt~~G~vy~wG 83 (539)
|++.|.. .+.|.||
T Consensus 140 HSFsl~g-nKcYlFG 153 (830)
T KOG4152|consen 140 HSFSLVG-NKCYLFG 153 (830)
T ss_pred ceeEEec-cEeEEec
Confidence 7777776 6899999
No 79
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=37.19 E-value=5.1e+02 Score=27.16 Aligned_cols=42 Identities=10% Similarity=0.132 Sum_probs=23.9
Q ss_pred CCeeEEEccCCcEEEEecCCCCCCCCC---CCCCccccEEeccccc
Q 009248 238 TNHTVAVDSKGYVYTWGFGGYGRLGHR---EQKDEWVPRRVDVFQR 280 (539)
Q Consensus 238 ~~hs~alt~~G~vy~wG~n~~GqLG~~---~~~~~~~p~~v~~~~~ 280 (539)
...++|+.-+|..++.|.+. |-..+- +......|++|..+.+
T Consensus 389 ~gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik~~dN 433 (514)
T KOG2055|consen 389 HGTSLCISLNGSYLATGSDS-GIVNIYDGNSCFASTNPKPIKTVDN 433 (514)
T ss_pred ceeeeeecCCCceEEeccCc-ceEEEeccchhhccCCCCchhhhhh
Confidence 34466777888899998753 222211 1222346777765554
No 80
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=36.35 E-value=4.8e+02 Score=26.59 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCc-EEEEEe-CCCEEEEeCCC-CCccCCCCCCCCCcCCCeeeccCCCCEEEEE-EecCCceEEEE
Q 009248 330 GWNLRCMDSGNM-HHFVGA-DSSCISWGHAQ-YGELGYGPYGQKSSAMPKKVDILEGMHVISV-ACGYGHSLVIV 400 (539)
Q Consensus 330 ~~~i~~i~~G~~-h~~~lt-~G~vy~wG~n~-~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~v-a~G~~ht~~l~ 400 (539)
...+..|..|.. |.++++ ||+.+.+-.|. .+.+ ..|+....+.+..| ..|..-.++++
T Consensus 289 ~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~V-------------sViD~~t~k~i~~i~~vg~~P~~~~~ 350 (352)
T TIGR02658 289 GKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTL-------------YIFDAETGKELSSVNQLGRGPQVITT 350 (352)
T ss_pred CeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcE-------------EEEECcCCeEEeeeccCCCCCeEEec
Confidence 445777887765 688888 88866665553 2222 33444444456666 55544444443
No 81
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=36.34 E-value=6.8e+02 Score=28.41 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccce--EeccCCCCcEEEEEeCCc--eeEEEecCC
Q 009248 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPT--IVSELSKYKIKKAGAGRS--HTVVVTEDG 129 (539)
Q Consensus 54 ~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~--~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G 129 (539)
.+..+..+..+....+.+++|+.|++|.+-.+.- -.+. ....|. .+....+.+|+.+.+... +.+++|+.|
T Consensus 523 egD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eI---P~GR--~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~G 597 (735)
T TIGR01062 523 AGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNL---PSAR--GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAG 597 (735)
T ss_pred CCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhc---CcCc--cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCC
Confidence 4445666666655667999999999999976543 2121 112222 233345677888877644 478889999
Q ss_pred CEEEeecCCC
Q 009248 130 NSLAFGWNKH 139 (539)
Q Consensus 130 ~vy~wG~n~~ 139 (539)
.++-.-.+.+
T Consensus 598 yGKrt~lse~ 607 (735)
T TIGR01062 598 YGFLCNFNDL 607 (735)
T ss_pred cEEEEEhHhc
Confidence 7776654433
No 82
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=36.26 E-value=33 Score=23.36 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=13.9
Q ss_pred cEEEEEeCCCEEEEeCC
Q 009248 341 MHHFVGADSSCISWGHA 357 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n 357 (539)
.|++++.+++||+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 47777779999999955
No 83
>PHA03282 envelope glycoprotein E; Provisional
Probab=36.21 E-value=52 Score=34.20 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=27.9
Q ss_pred hhhccccCCCCChhhhhcchhhhhhccCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 009248 460 EEEENSDYESDDSEEQANGQSERKKQAGGKASGRGRGKAANKLSGDGKGTGRGRGRPTSTNK 521 (539)
Q Consensus 460 ~e~d~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (539)
-.|..+|.|.|++++...+.+++-.--..+++|.|..--...+.. ...-|++|+|..-|.+
T Consensus 461 yad~ssd~~~e~~~~~~~~~~~~~~~d~~~~~gsgf~ils~~~~~-p~s~~~~~~~~l~tfr 521 (540)
T PHA03282 461 YADLSSDGEGEDSEVYDSDPDRLPGTDSPPKRGSGFQILSGTKPD-PWSPGARSRRDLTTFR 521 (540)
T ss_pred hhhhccccccccccccccCcccccCCCCCCcCCcceEeccCCCCC-CCCccccccccccccc
Confidence 344455666666655444333332223333455544433333222 3444555666665544
No 84
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=35.95 E-value=5.2e+02 Score=26.88 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=34.3
Q ss_pred eEEEe--cCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEE-EcCCcEEEEEe-CCCEEEEeCC
Q 009248 288 AVISA--GSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCM-DSGNMHHFVGA-DSSCISWGHA 357 (539)
Q Consensus 288 ~~I~~--G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i-~~G~~h~~~lt-~G~vy~wG~n 357 (539)
..|+. .+.+.++++.+|.+|+.-.... ... ..+..-......+| -||+. ++++. +..|+..|..
T Consensus 220 ~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~--~e~~~~~~~~p~~~~WCG~d-av~l~~~~~l~lvg~~ 287 (410)
T PF04841_consen 220 IKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKL--CEFDTDSKSPPKQMAWCGND-AVVLSWEDELLLVGPD 287 (410)
T ss_pred EEEEECCCCCEEEEEECCCCEEEEECccc---cee--EEeecCcCCCCcEEEEECCC-cEEEEeCCEEEEECCC
Confidence 34443 4567788899999998743211 000 11110111133344 58875 44444 8888888844
No 85
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=35.94 E-value=17 Score=33.55 Aligned_cols=7 Identities=29% Similarity=0.672 Sum_probs=3.1
Q ss_pred cCCcEEE
Q 009248 246 SKGYVYT 252 (539)
Q Consensus 246 ~~G~vy~ 252 (539)
.+|+||.
T Consensus 55 dngkLyL 61 (303)
T COG5129 55 DNGKLYL 61 (303)
T ss_pred cCCEEEE
Confidence 3444443
No 86
>PF09309 FCP1_C: FCP1, C-terminal; InterPro: IPR015388 The C-terminal domain of FCP-1 is required for interaction with the carboxy terminal domain of RAP74. Interaction relies extensively on van der Waals contacts between hydrophobic residues situated within alpha-helices in both domains []. ; PDB: 1ONV_B 1J2X_B.
Probab=35.68 E-value=12 Score=34.81 Aligned_cols=9 Identities=11% Similarity=0.424 Sum_probs=0.0
Q ss_pred cCCCCChhh
Q 009248 466 DYESDDSEE 474 (539)
Q Consensus 466 ~~e~~~~~~ 474 (539)
|+|++.+..
T Consensus 162 eSdsekkk~ 170 (263)
T PF09309_consen 162 ESDSEKKKK 170 (263)
T ss_dssp ---------
T ss_pred ccccccccC
Confidence 444444433
No 87
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=35.66 E-value=15 Score=39.42 Aligned_cols=12 Identities=50% Similarity=0.637 Sum_probs=6.0
Q ss_pred cccCCCCChhhh
Q 009248 464 NSDYESDDSEEQ 475 (539)
Q Consensus 464 ~~~~e~~~~~~~ 475 (539)
++|.++++++++
T Consensus 911 ~s~~~~~ds~se 922 (952)
T KOG1834|consen 911 SSDSDSADSESE 922 (952)
T ss_pred ccccccccCccc
Confidence 444555555543
No 88
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=34.97 E-value=2.3e+02 Score=28.16 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=12.2
Q ss_pred eeEEEecCCCEEEeecCC
Q 009248 121 HTVVVTEDGNSLAFGWNK 138 (539)
Q Consensus 121 ht~~Lt~~G~vy~wG~n~ 138 (539)
++.+...+++||.+|-..
T Consensus 216 ~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 216 AASIKINESLLLCIGGFN 233 (323)
T ss_pred eeEEEECCCEEEEECCcC
Confidence 444455678999998643
No 89
>KOG2897 consensus DNA-binding protein YL1 and related proteins [General function prediction only]
Probab=34.06 E-value=21 Score=35.82 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCcccccc
Q 009248 511 RGRGRPTSTNKSSQSVQG 528 (539)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~ 528 (539)
+++.++...+-..++++.
T Consensus 103 ~k~~~k~~~~l~~~~~~~ 120 (390)
T KOG2897|consen 103 KKALKKRAANLPAADKKP 120 (390)
T ss_pred hhhhcccccccccccCCC
Confidence 333333333333333333
No 90
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=33.71 E-value=3.7e+02 Score=26.35 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=41.4
Q ss_pred EEEEEeCC---CeeEEEccCCcEEEEecCC-CCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcE
Q 009248 231 IVKVACGT---NHTVAVDSKGYVYTWGFGG-YGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQL 306 (539)
Q Consensus 231 I~~Ia~G~---~hs~alt~~G~vy~wG~n~-~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~v 306 (539)
++.+..|. -|.+++..||..|..-... -+.|+. .. ..-++.+.. ...+-+.-.+.+++..|.|
T Consensus 95 v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dp--kt--~evt~f~lp---------~~~a~~nlet~vfD~~G~l 161 (353)
T COG4257 95 VETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDP--KT--LEVTRFPLP---------LEHADANLETAVFDPWGNL 161 (353)
T ss_pred eEEEecCCCCCCceEEECCCCCeeEecCcceeEEecC--cc--cceEEeecc---------cccCCCcccceeeCCCccE
Confidence 44444443 3888999999999874332 111111 11 111111111 1334455678899999999
Q ss_pred EEecCCCCCC
Q 009248 307 YMWGKLKNNG 316 (539)
Q Consensus 307 y~wG~n~~~~ 316 (539)
|.-|++...+
T Consensus 162 WFt~q~G~yG 171 (353)
T COG4257 162 WFTGQIGAYG 171 (353)
T ss_pred EEeeccccce
Confidence 9999876443
No 91
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.55 E-value=4e+02 Score=31.64 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=47.2
Q ss_pred cEEEEEeCCce-eEEEe--cCCCEEEeecCCCCCCCC-CCCCCcccccceeeccCceEEE-EeCCCeeEEEEccCCceEE
Q 009248 111 KIKKAGAGRSH-TVVVT--EDGNSLAFGWNKHGQLGS-GSIRNEIEPSPVRCLVSEVTAT-ACGADFTVWLSSVEGASIL 185 (539)
Q Consensus 111 ~I~~Ia~G~~h-t~~Lt--~~G~vy~wG~n~~gqlG~-~~~~~~~~~~~~~~~~~~i~~i-a~G~~~s~~lt~~~G~~vy 185 (539)
.+.+++....| +++++ .||.|-.|-.-.. .|. +......+..+ ....+..+ .|++.+.+|+...|| .|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~ltys~---~~sr~~~vt~~~~~~~~Av~t~DG-~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSELTYSP---EGSRVEKVTMCGNGDQFAVSTKDG-SVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeeeEEEec---cCCceEEEEeccCCCeEEEEcCCC-eEE
Confidence 46688888899 77775 7899999954322 333 22222211111 12334444 588888888887888 888
Q ss_pred ecCCCCc
Q 009248 186 NAGLPQY 192 (539)
Q Consensus 186 ~wG~n~~ 192 (539)
...-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 7776654
No 92
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=32.20 E-value=6.3e+02 Score=26.66 Aligned_cols=69 Identities=7% Similarity=0.032 Sum_probs=35.6
Q ss_pred EEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCc----EEEEEcCCcEEEEEe---CCCEEEEeCCCCCcc
Q 009248 290 ISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWN----LRCMDSGNMHHFVGA---DSSCISWGHAQYGEL 362 (539)
Q Consensus 290 I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~----i~~i~~G~~h~~~lt---~G~vy~wG~n~~GqL 362 (539)
+.-.....++-+.++.++++..+...... +.+ .+.+.. -.+|.+.-.-.++++ +|.||.|+++..-.+
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~n---kkK--~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLN---KKK--RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccC---Hhh--hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 33444566677778888888753311100 111 112222 233433333333333 799999999986544
Q ss_pred C
Q 009248 363 G 363 (539)
Q Consensus 363 G 363 (539)
.
T Consensus 468 ~ 468 (503)
T KOG0282|consen 468 S 468 (503)
T ss_pred h
Confidence 3
No 93
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=31.55 E-value=35 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=8.2
Q ss_pred eEEEeCCCcEEEecC
Q 009248 297 SSCTAGGGQLYMWGK 311 (539)
Q Consensus 297 s~~lt~~G~vy~wG~ 311 (539)
.-+-..+|.+|.+=.
T Consensus 51 ATVre~~g~~yLymK 65 (303)
T KOG3064|consen 51 ATVREENGVLYLYMK 65 (303)
T ss_pred eeEeecCCEEEEEEe
Confidence 334445666666543
No 94
>PRK05560 DNA gyrase subunit A; Validated
Probab=31.35 E-value=8.6e+02 Score=27.99 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=85.1
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccc--eEeccCCCCcEEEEEeCC-----ceeEEEecC
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAGR-----SHTVVVTED 128 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P--~~v~~~~~~~I~~Ia~G~-----~ht~~Lt~~ 128 (539)
..+..+...-...+.+++|+.|++|..=.. +|........-.| ..+....+.+|+.+.+-. ...+++|.+
T Consensus 537 D~l~~~~~~~t~d~LllfTs~Grv~~l~v~---~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~ 613 (805)
T PRK05560 537 DFVEHLFVASTHDTLLFFTNRGRVYRLKVY---EIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKN 613 (805)
T ss_pred CeeEEEEEecCCCeEEEEecCCeEEEEEhh---hCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCC
Confidence 345555444446678999999999998654 2222111111111 123334567788777754 356888999
Q ss_pred CCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEE--EeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCccc
Q 009248 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTAT--ACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTK 206 (539)
Q Consensus 129 G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~i--a~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~ 206 (539)
|.+.-.-...+-....+ ......+. ....++.+ +....+.+++| +.| .+|.+-....-..|....
T Consensus 614 GyiKRi~l~~~~~~~r~----G~~~ikLk-e~D~lv~v~~~~~~d~lll~T-~~G-r~~r~~~~eIp~~gr~~~------ 680 (805)
T PRK05560 614 GTVKKTSLSEFSNIRSN----GIIAINLD-EGDELIGVRLTDGDDDILLAT-KNG-KAIRFPESDVRPMGRTAR------ 680 (805)
T ss_pred CEEEEEEhHHhhhcccC----CceeeccC-CCCEEEEEEEeCCCCEEEEEE-CCC-cEEEEEhhhcCccCcccC------
Confidence 98775543332111100 00000000 01223333 22334567777 788 888765443322221111
Q ss_pred CCcccccccccCCceeeccc-CCCeEEEEEeCC---CeeEEEccCCcEEEEe
Q 009248 207 DSSVKLAYEAQPRPRAIAAL-AGETIVKVACGT---NHTVAVDSKGYVYTWG 254 (539)
Q Consensus 207 ~~~~~~~~~~~~~p~~i~~~-~~~~I~~Ia~G~---~hs~alt~~G~vy~wG 254 (539)
...+..+ .+++|+.+.+.. .+.+++|..|.+.-.=
T Consensus 681 -------------Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 681 -------------GVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred -------------CcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 1111122 345676666543 2577788888766553
No 95
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=31.29 E-value=48 Score=22.40 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=11.4
Q ss_pred cEEEEEecCCcEEEEe
Q 009248 68 CHCVAVDVEGRCYTWG 83 (539)
Q Consensus 68 ~h~~~lt~~G~vy~wG 83 (539)
.|++++..+++||++|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 5888888889999999
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=30.57 E-value=6.4e+02 Score=26.30 Aligned_cols=149 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred CcEEEEEeCCceeEEE--ecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEec
Q 009248 110 YKIKKAGAGRSHTVVV--TEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNA 187 (539)
Q Consensus 110 ~~I~~Ia~G~~ht~~L--t~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~w 187 (539)
.+|.++..-...-.++ ..|-.++.| +......+..+.....+|..++.-..-=++|. .+...-|+|
T Consensus 262 kki~~v~~~~~~~~v~~aSad~~i~vw-----------s~~~~s~~~~~~~h~~~V~~ls~h~tgeYlls-As~d~~w~F 329 (506)
T KOG0289|consen 262 KKITSVKFHKDLDTVITASADEIIRVW-----------SVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLS-ASNDGTWAF 329 (506)
T ss_pred eEEEEEEeccchhheeecCCcceEEee-----------ccccccCccccccccccceeeeeccCCcEEEE-ecCCceEEE
Q ss_pred CCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEe-CC---CeeEEEccCCcEEEEecCCCCCCCC
Q 009248 188 GLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVAC-GT---NHTVAVDSKGYVYTWGFGGYGRLGH 263 (539)
Q Consensus 188 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~-G~---~hs~alt~~G~vy~wG~n~~GqLG~ 263 (539)
-.-..| ..+..+.. +. .+++++--||.+|+-|.-+ |.
T Consensus 330 sd~~~g-----------------------------------~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d----~~ 370 (506)
T KOG0289|consen 330 SDISSG-----------------------------------SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD----GV 370 (506)
T ss_pred EEccCC-----------------------------------cEEEEEeeccccceeEEeeEcCCceEEeccCCC----ce
Q ss_pred CCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEe
Q 009248 264 REQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMW 309 (539)
Q Consensus 264 ~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~w 309 (539)
-.-.+...+..+..|....-.-..++.+-..++.+.-.+++.|.+|
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
No 97
>PHA02790 Kelch-like protein; Provisional
Probab=30.51 E-value=1.1e+02 Score=32.75 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=10.1
Q ss_pred CCCCceEEEecCC
Q 009248 16 KEKGGELLFCGST 28 (539)
Q Consensus 16 ~~~~G~vy~wG~n 28 (539)
+.-+|+||+.|-.
T Consensus 315 v~~~~~iYviGG~ 327 (480)
T PHA02790 315 VPANNKLYVVGGL 327 (480)
T ss_pred EEECCEEEEECCc
Confidence 3568999999953
No 98
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=29.88 E-value=96 Score=18.37 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=14.2
Q ss_pred EEEEEecCCcEEEEeCCC
Q 009248 69 HCVAVDVEGRCYTWGRNE 86 (539)
Q Consensus 69 h~~~lt~~G~vy~wG~n~ 86 (539)
|.++++.+|.||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 678888999999876543
No 99
>PF13964 Kelch_6: Kelch motif
Probab=29.38 E-value=43 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=14.7
Q ss_pred cEEEEEeCCCEEEEeCCCC
Q 009248 341 MHHFVGADSSCISWGHAQY 359 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~~ 359 (539)
.|+++..+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 5677777999999996544
No 100
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=29.18 E-value=34 Score=35.96 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=2.7
Q ss_pred CCCCccc
Q 009248 432 TVPPKKG 438 (539)
Q Consensus 432 ~~~~~k~ 438 (539)
+.++++.
T Consensus 112 plPP~~~ 118 (641)
T KOG0772|consen 112 PLPPKKL 118 (641)
T ss_pred CCCchhc
Confidence 3334333
No 101
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.71 E-value=2.1e+02 Score=27.38 Aligned_cols=68 Identities=12% Similarity=0.042 Sum_probs=37.0
Q ss_pred eEEEeCCCcEEEecCCCCCCCCccceeeec----cCCCCcEEEEEcCCcEEEEEeCCCEEEEeCCCCCc-cCC
Q 009248 297 SSCTAGGGQLYMWGKLKNNGDDWMYPKPLM----DLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGE-LGY 364 (539)
Q Consensus 297 s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~----~l~~~~i~~i~~G~~h~~~lt~G~vy~wG~n~~Gq-LG~ 364 (539)
.++-...|+|.+.--+.-.......|-+.. .-.+-.|-.++.-+.|.+.--||.||+|=+|+.-. ++.
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLAT 97 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccc
Confidence 444455666666654432111111121111 12233566777666666555599999999998655 443
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.19 E-value=6.1e+02 Score=25.30 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=14.1
Q ss_pred eeEEEccCCcEEEEecCCC
Q 009248 240 HTVAVDSKGYVYTWGFGGY 258 (539)
Q Consensus 240 hs~alt~~G~vy~wG~n~~ 258 (539)
|-+.-.+||.|-.|-....
T Consensus 99 hLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred heeeecCCCcEEEEEcCCe
Confidence 6677778888888866554
No 103
>KOG0262 consensus RNA polymerase I, large subunit [Transcription]
Probab=28.18 E-value=39 Score=39.35 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=11.9
Q ss_pred eCCCeeEEEccCCcEEEEecCC
Q 009248 236 CGTNHTVAVDSKGYVYTWGFGG 257 (539)
Q Consensus 236 ~G~~hs~alt~~G~vy~wG~n~ 257 (539)
.-+.+++ -+.||.|.-|=++.
T Consensus 1004 V~YD~TV-RDsDgsvVQF~YGE 1024 (1640)
T KOG0262|consen 1004 VHYDLTV-RDSDGSVVQFMYGE 1024 (1640)
T ss_pred EeccceE-EcCCCcEEEEeecC
Confidence 3344443 66778877664443
No 104
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=27.45 E-value=1.2e+02 Score=30.13 Aligned_cols=58 Identities=16% Similarity=0.207 Sum_probs=40.8
Q ss_pred eEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe---CCCEEEEeC
Q 009248 297 SSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA---DSSCISWGH 356 (539)
Q Consensus 297 s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt---~G~vy~wG~ 356 (539)
.++....|.||+|--.... +...++......+..|.|.+....-++++. ++.||-|-+
T Consensus 322 la~gnq~g~v~vwdL~~~e--p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 322 LALGNQSGKVYVWDLDNNE--PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HhhccCCCcEEEEECCCCC--CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 3455678999999764332 225566677777888999998877665543 799999854
No 105
>COG5129 MAK16 Nuclear protein with HMG-like acidic region [General function prediction only]
Probab=26.97 E-value=27 Score=32.21 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=5.1
Q ss_pred eCCCcEEEec
Q 009248 301 AGGGQLYMWG 310 (539)
Q Consensus 301 t~~G~vy~wG 310 (539)
..+|.||.+=
T Consensus 54 ~dngkLyLym 63 (303)
T COG5129 54 ADNGKLYLYM 63 (303)
T ss_pred ecCCEEEEEe
Confidence 3455555543
No 106
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=26.83 E-value=59 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=12.0
Q ss_pred CCCEEEEeCCCCCccC
Q 009248 348 DSSCISWGHAQYGELG 363 (539)
Q Consensus 348 ~G~vy~wG~n~~GqLG 363 (539)
.=.+.+||+|..|.+.
T Consensus 17 SlslVVWGRnG~g~~~ 32 (33)
T PRK02529 17 SIAMVVWGRNGDGSID 32 (33)
T ss_pred eeEEEEEecCCccccC
Confidence 3457899999888664
No 107
>PF13854 Kelch_5: Kelch motif
Probab=26.71 E-value=61 Score=21.29 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=14.2
Q ss_pred cEEEEEeCCCEEEEeCCC
Q 009248 341 MHHFVGADSSCISWGHAQ 358 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~ 358 (539)
.|++++.++++|+||=..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 577777799999999544
No 108
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=26.10 E-value=65 Score=27.64 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=4.5
Q ss_pred CCCCCCCCcc
Q 009248 515 RPTSTNKSSQ 524 (539)
Q Consensus 515 ~~~~~~~~~~ 524 (539)
-|.+.+.|+|
T Consensus 71 ~PLRQEsStq 80 (173)
T PF15470_consen 71 CPLRQESSTQ 80 (173)
T ss_pred ccccccchhh
Confidence 3444444443
No 109
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=25.28 E-value=25 Score=38.63 Aligned_cols=7 Identities=0% Similarity=0.482 Sum_probs=3.3
Q ss_pred cEEEecC
Q 009248 305 QLYMWGK 311 (539)
Q Consensus 305 ~vy~wG~ 311 (539)
.|+.++.
T Consensus 700 ~vf~F~D 706 (911)
T PF05086_consen 700 RVFSFRD 706 (911)
T ss_pred eeEeech
Confidence 3445544
No 110
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=24.96 E-value=7.4e+02 Score=28.31 Aligned_cols=137 Identities=15% Similarity=0.051 Sum_probs=61.2
Q ss_pred EEEccCCcEEEEecCC-CCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCcc
Q 009248 242 VAVDSKGYVYTWGFGG-YGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWM 320 (539)
Q Consensus 242 ~alt~~G~vy~wG~n~-~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~ 320 (539)
+.++.-..+|.+=+|. .|||++...... .+..|-.+.. ..+.+..++|+ ||..++|-.-. -
T Consensus 367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghs-d~~yvLd~Hp---fn~ri~msag~--------dgst~iwdi~e------g 428 (1113)
T KOG0644|consen 367 IVVTARNDHRLCVWNLYTGQLLHNLMGHS-DEVYVLDVHP---FNPRIAMSAGY--------DGSTIIWDIWE------G 428 (1113)
T ss_pred cceeeeeeeEeeeeecccchhhhhhcccc-cceeeeeecC---CCcHhhhhccC--------CCceEeeeccc------C
Confidence 3344444555555554 367766432211 2222221111 11234667775 45555554321 2
Q ss_pred ceeeeccCCCCcEEEEEcC-CcEEEEEe-C-CCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceE
Q 009248 321 YPKPLMDLSGWNLRCMDSG-NMHHFVGA-D-SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSL 397 (539)
Q Consensus 321 ~P~~v~~l~~~~i~~i~~G-~~h~~~lt-~-G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~ 397 (539)
.|.++.......+++-... +..+++|+ + |++|..|.... .. + ...+--++..|.+-.+
T Consensus 429 ~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs------~s--------~-----k~ak~dqffl~dyrpl 489 (1113)
T KOG0644|consen 429 IPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS------KS--------Q-----KKAKYDQFFLGDYRPL 489 (1113)
T ss_pred CcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCC------cc--------c-----cccccceEeecCcccc
Confidence 3333333332233322222 23466777 3 89998775431 10 0 0112234555556666
Q ss_pred EEEcCCccccccccceee
Q 009248 398 VIVDRTNVGERLDQLDVY 415 (539)
Q Consensus 398 ~l~~~g~v~~~~~~~~~~ 415 (539)
+-..+|.|..+..++-..
T Consensus 490 irdTn~~vldqeTq~~ph 507 (1113)
T KOG0644|consen 490 IRDTNGYVLDQETQLAPH 507 (1113)
T ss_pred cccccchhhhhHhhhccc
Confidence 666666665554444333
No 111
>PLN02772 guanylate kinase
Probab=24.58 E-value=1.7e+02 Score=30.35 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=36.4
Q ss_pred CCCCceEEEecCCCCC-CCCCCC---CCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCC
Q 009248 16 KEKGGELLFCGSTCWD-AVGRRK---GALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRN 85 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~g-qLG~~~---~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n 85 (539)
+.-..++|+||-+... .+-... +.....-..|.-+-..+.. | ..|++++-.+.++++.+..
T Consensus 31 v~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~--------r-~GhSa~v~~~~rilv~~~~ 95 (398)
T PLN02772 31 VTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKP--------C-KGYSAVVLNKDRILVIKKG 95 (398)
T ss_pred EEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCC--------C-CcceEEEECCceEEEEeCC
Confidence 4567899999954433 243222 3223334455544333321 3 4599999999999999853
No 112
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=23.69 E-value=3.3e+02 Score=25.79 Aligned_cols=60 Identities=20% Similarity=0.160 Sum_probs=38.0
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEEeec
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAFGW 136 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~wG~ 136 (539)
..-.++.+.+|.||+|=.|.+|++-. ++..........|..++. ..++-..+|+++.|-.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d----------~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD----------RVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH----------hhhcccccceeccccccccceeEEeccCCceeeecc
Confidence 34577889999999999997776421 111122222445556666 4455567889998854
No 113
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=23.59 E-value=79 Score=33.50 Aligned_cols=7 Identities=0% Similarity=-0.069 Sum_probs=4.8
Q ss_pred CCCEEEE
Q 009248 348 DSSCISW 354 (539)
Q Consensus 348 ~G~vy~w 354 (539)
.|.||..
T Consensus 351 eG~LYPL 357 (615)
T KOG0526|consen 351 EGLLYPL 357 (615)
T ss_pred CceEeec
Confidence 5777764
No 114
>PF09309 FCP1_C: FCP1, C-terminal; InterPro: IPR015388 The C-terminal domain of FCP-1 is required for interaction with the carboxy terminal domain of RAP74. Interaction relies extensively on van der Waals contacts between hydrophobic residues situated within alpha-helices in both domains []. ; PDB: 1ONV_B 1J2X_B.
Probab=23.47 E-value=27 Score=32.65 Aligned_cols=8 Identities=63% Similarity=1.049 Sum_probs=0.0
Q ss_pred CCCCCCCC
Q 009248 531 GKRGRPRK 538 (539)
Q Consensus 531 ~~~~~~~~ 538 (539)
|.||--||
T Consensus 212 ~prGhKRK 219 (263)
T PF09309_consen 212 GPRGHKRK 219 (263)
T ss_dssp --------
T ss_pred cCCccccc
Confidence 34444443
No 115
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=9.8e+02 Score=27.00 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=36.0
Q ss_pred EEEEEeCCCee-EEEccCCcEEEEecCCCCCCCCCCCCC-ccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEE
Q 009248 231 IVKVACGTNHT-VAVDSKGYVYTWGFGGYGRLGHREQKD-EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYM 308 (539)
Q Consensus 231 I~~Ia~G~~hs-~alt~~G~vy~wG~n~~GqLG~~~~~~-~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~ 308 (539)
++...=...|. ++++.+|.|+.+|.- |.-.... .-.+.. .+.|...-.-.+-.++++.+|++++
T Consensus 86 lI~mgWs~~eeLI~v~k~g~v~Vy~~~-----ge~ie~~svg~e~~---------~~~I~ec~~f~~GVavlt~~g~v~~ 151 (829)
T KOG2280|consen 86 LIGMGWSDDEELICVQKDGTVHVYGLL-----GEFIESNSVGFESQ---------MSDIVECRFFHNGVAVLTVSGQVIL 151 (829)
T ss_pred eeeecccCCceEEEEeccceEEEeecc-----hhhhcccccccccc---------cCceeEEEEecCceEEEecCCcEEE
Confidence 44443334444 568899999998752 2211110 000111 1122233333366788999999998
Q ss_pred ecCCC
Q 009248 309 WGKLK 313 (539)
Q Consensus 309 wG~n~ 313 (539)
--.+.
T Consensus 152 i~~~~ 156 (829)
T KOG2280|consen 152 INGVE 156 (829)
T ss_pred EcCCC
Confidence 75543
No 116
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=22.93 E-value=60 Score=25.21 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.7
Q ss_pred CeEEEEEeCCCcEEEEEecCC
Q 009248 57 DIRFVAAGCVSCHCVAVDVEG 77 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G 77 (539)
.|.+++.|||..|-+++.+..
T Consensus 22 ~V~D~SgGCG~~F~v~IvS~~ 42 (85)
T KOG3348|consen 22 EVQDVSGGCGSMFDVVIVSAA 42 (85)
T ss_pred EEEEcCCCccceEEEEEEccc
Confidence 688999999999999998864
No 117
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=22.09 E-value=44 Score=40.44 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.4
Q ss_pred CCCEEE
Q 009248 348 DSSCIS 353 (539)
Q Consensus 348 ~G~vy~ 353 (539)
+|.+|-
T Consensus 71 ~g~~y~ 76 (2849)
T PTZ00415 71 NGGIYN 76 (2849)
T ss_pred CCCEEe
Confidence 344443
No 118
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.97 E-value=1.3e+03 Score=27.01 Aligned_cols=258 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CccCCeEecCC-CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCcc-CCCCCCCcccceE-----eccCCCCcEEEE
Q 009248 43 NLVSPTRLRPL-VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQL-GHGDKIQRDRPTI-----VSELSKYKIKKA 115 (539)
Q Consensus 43 ~~~~P~~i~~~-~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqL-G~g~~~~~~~P~~-----v~~~~~~~I~~I 115 (539)
.++.|+....+ -..+|..|+++......++|+++|.|+.|=.....-. +.........+.. ........+.++
T Consensus 413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (928)
T PF04762_consen 413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQL 492 (928)
T ss_pred CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEE
Q ss_pred EeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee-EEEEccCCceEEecCCCCccc
Q 009248 116 GAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQ 194 (539)
Q Consensus 116 a~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG~n~~Gq 194 (539)
++=..+.+++..+.. ......--+-...................+..++....-. +++-..+| .|| +
T Consensus 493 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G-~v~--------~ 560 (928)
T PF04762_consen 493 AWLNDDTLLVLSDSD---SNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDG-KVF--------Q 560 (928)
T ss_pred EEeCCCEEEEEEecC---cccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCC-EEE--------E
Q ss_pred cCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCC--CeeEEEccCCcEEEEecCCCCCCCCCCCCCcccc
Q 009248 195 LGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVP 272 (539)
Q Consensus 195 LG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p 272 (539)
+-...... .....|.....+ .+..+.... .+.+.|+..|++|
T Consensus 561 ~~~~~~~~------------~~~~fp~~c~~~---~~~~~~~~~~~~~~~GLs~~~~Ly--------------------- 604 (928)
T PF04762_consen 561 LSSDGELS------------QIVKFPQPCPWM---EVCQINGSEDKRVLFGLSSNGRLY--------------------- 604 (928)
T ss_pred eecCCCcc------------ccccCCCCCcEE---EEEEECCccceeEEEEECCCCEEE---------------------
Q ss_pred EEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCE
Q 009248 273 RRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSC 351 (539)
Q Consensus 273 ~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~v 351 (539)
.....+...+..+.....|-++.|....+.+.--+.....-...+..-....+..+..|--|..=..++- +-+|
T Consensus 605 -----~n~~~la~~~tSF~v~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~v 679 (928)
T PF04762_consen 605 -----ANSRLLASNCTSFAVTDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSV 679 (928)
T ss_pred -----ECCEEEecCCceEEEEcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceE
Q ss_pred EE
Q 009248 352 IS 353 (539)
Q Consensus 352 y~ 353 (539)
..
T Consensus 680 VL 681 (928)
T PF04762_consen 680 VL 681 (928)
T ss_pred EE
No 119
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.79 E-value=32 Score=39.27 Aligned_cols=31 Identities=42% Similarity=0.646 Sum_probs=0.0
Q ss_pred CCCchhhhhccccCCCCChhhhhcchhhhhh
Q 009248 454 DSSEEEEEEENSDYESDDSEEQANGQSERKK 484 (539)
Q Consensus 454 ~~~~~e~e~d~~~~e~~~~~~~~~~~~~~~~ 484 (539)
|+|++++++|++++|+++.+++++++++...
T Consensus 862 dse~~~~~~~~~e~~~~ee~~~ee~eeeee~ 892 (1096)
T TIGR00927 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892 (1096)
T ss_pred cccccccccchhhhccccccccccccccccc
No 120
>PLN02193 nitrile-specifier protein
Probab=21.72 E-value=9.7e+02 Score=25.35 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=12.0
Q ss_pred cEEEEEecCCcEEEEeCC
Q 009248 68 CHCVAVDVEGRCYTWGRN 85 (539)
Q Consensus 68 ~h~~~lt~~G~vy~wG~n 85 (539)
.|++++. ++.||++|-.
T Consensus 168 ~h~~~~~-~~~iyv~GG~ 184 (470)
T PLN02193 168 SHGIAQV-GNKIYSFGGE 184 (470)
T ss_pred ccEEEEE-CCEEEEECCc
Confidence 3776665 4689999953
No 121
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.70 E-value=6.6e+02 Score=23.52 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=12.5
Q ss_pred ceeEEEecCCCEEEeec
Q 009248 120 SHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 120 ~ht~~Lt~~G~vy~wG~ 136 (539)
--.++++.+|+||+.-.
T Consensus 186 pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEBTTS-EEEEEE
T ss_pred CCcceEcCCCCEEEEEc
Confidence 45788999999998743
No 122
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=21.38 E-value=1.8e+02 Score=22.54 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=28.3
Q ss_pred ccceEeccCCCCcEEEEEeC-CceeEEEecCCCEEEeecCCCCC
Q 009248 99 DRPTIVSELSKYKIKKAGAG-RSHTVVVTEDGNSLAFGWNKHGQ 141 (539)
Q Consensus 99 ~~P~~v~~~~~~~I~~Ia~G-~~ht~~Lt~~G~vy~wG~n~~gq 141 (539)
..|..+.. +..=..|+|. ....++|+.||.||.-+--..|.
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 34555543 4457889999 88999999999999988755555
Done!