Query 009248
Match_columns 539
No_of_seqs 432 out of 2250
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 22:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 2.6E-68 8.9E-73 551.0 32.6 361 16-403 16-388 (389)
2 1a12_A RCC1, regulator of chro 100.0 1.7E-64 5.9E-69 526.9 39.9 370 16-405 23-412 (413)
3 3mvd_K Regulator of chromosome 100.0 6.6E-64 2.3E-68 524.3 43.1 363 17-404 40-420 (423)
4 4d9s_A UVB-resistance protein 100.0 5.4E-64 1.8E-68 521.4 37.5 339 17-382 32-379 (406)
5 3of7_A Regulator of chromosome 100.0 5.4E-64 1.8E-68 531.4 38.1 362 17-402 26-450 (473)
6 4d9s_A UVB-resistance protein 100.0 1.3E-63 4.6E-68 518.5 37.9 341 55-426 15-365 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.4E-60 8.3E-65 491.4 29.2 327 67-422 10-348 (389)
8 3mvd_K Regulator of chromosome 100.0 6.7E-58 2.3E-62 478.8 33.5 330 55-422 23-377 (423)
9 1a12_A RCC1, regulator of chro 100.0 1.1E-57 3.9E-62 475.3 32.8 327 67-422 17-368 (413)
10 3of7_A Regulator of chromosome 100.0 1.1E-57 3.8E-62 483.0 29.0 328 65-422 17-408 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 5.3E-51 1.8E-55 401.6 30.4 274 21-406 3-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.4E-44 4.9E-49 355.8 27.3 235 19-352 41-276 (282)
13 4gbf_A Phikz131; 7-bladed beta 96.4 0.0056 1.9E-07 56.1 6.6 126 9-155 260-396 (400)
14 4gbf_A Phikz131; 7-bladed beta 94.7 0.024 8E-07 52.1 4.1 68 229-313 309-376 (400)
15 1k3i_A Galactose oxidase precu 94.6 1.8 6.1E-05 46.6 19.9 67 295-361 458-534 (656)
16 1p22_A F-BOX/WD-repeat protein 94.5 4.4 0.00015 40.6 27.9 236 56-358 174-414 (435)
17 2zwa_A Leucine carboxyl methyl 94.2 0.97 3.3E-05 49.2 16.6 19 119-137 441-460 (695)
18 1p22_A F-BOX/WD-repeat protein 94.0 5.5 0.00019 39.9 31.5 228 57-356 135-363 (435)
19 4a11_B DNA excision repair pro 93.2 6.6 0.00022 38.2 32.7 86 49-137 37-130 (408)
20 3k26_A Polycomb protein EED; W 93.2 6.1 0.00021 37.8 24.3 279 56-356 70-364 (366)
21 4aez_A CDC20, WD repeat-contai 93.2 7.2 0.00024 38.5 26.5 113 55-190 134-247 (401)
22 3mmy_A MRNA export factor; mRN 93.2 6.1 0.00021 37.7 28.7 160 47-256 31-198 (368)
23 1k3i_A Galactose oxidase precu 93.0 0.66 2.3E-05 50.1 12.6 18 67-84 288-305 (656)
24 2ovr_B FBW7, F-BOX/WD repeat p 92.6 9.1 0.00031 38.3 32.2 187 111-357 241-441 (445)
25 1sq9_A Antiviral protein SKI8; 90.9 12 0.00042 36.2 24.2 107 17-138 33-157 (397)
26 2ovr_B FBW7, F-BOX/WD repeat p 89.9 17 0.00058 36.2 37.5 267 57-418 121-390 (445)
27 2zwa_A Leucine carboxyl methyl 88.3 6.7 0.00023 42.5 15.0 19 237-255 490-508 (695)
28 3odt_A Protein DOA1; ubiquitin 87.9 17 0.00057 33.7 29.6 230 55-357 59-295 (313)
29 2uvk_A YJHT; unknown function, 87.5 8.1 0.00028 37.5 13.9 16 341-356 309-324 (357)
30 3sfz_A APAF-1, apoptotic pepti 87.0 49 0.0017 38.0 23.4 109 57-190 963-1073(1249)
31 1r5m_A SIR4-interacting protei 86.6 24 0.00084 34.1 25.1 30 56-85 150-179 (425)
32 1b34_A Protein (small nuclear 86.4 0.13 4.6E-06 42.2 0.0 7 510-516 111-117 (119)
33 1gxr_A ESG1, transducin-like e 85.9 22 0.00077 33.1 30.7 233 67-357 11-254 (337)
34 2vpj_A Kelch-like protein 12; 85.4 14 0.00048 34.7 14.0 16 120-136 152-167 (301)
35 1gxr_A ESG1, transducin-like e 85.3 24 0.00082 32.9 33.2 269 16-358 17-296 (337)
36 3ii7_A Kelch-like protein 7; p 84.8 18 0.0006 34.1 14.4 18 340-357 239-256 (306)
37 2vpj_A Kelch-like protein 12; 83.4 17 0.00059 34.0 13.6 59 295-356 199-261 (301)
38 2xyi_A Probable histone-bindin 83.4 38 0.0013 33.6 21.7 162 57-257 183-353 (430)
39 4a11_B DNA excision repair pro 82.9 35 0.0012 32.8 25.8 254 55-359 99-366 (408)
40 1yfq_A Cell cycle arrest prote 82.3 33 0.0011 32.2 28.9 163 56-257 12-179 (342)
41 3odt_A Protein DOA1; ubiquitin 82.3 30 0.001 31.8 32.8 268 56-418 19-295 (313)
42 4aow_A Guanine nucleotide-bind 81.9 34 0.0012 32.0 23.3 30 56-85 87-116 (340)
43 3zwl_B Eukaryotic translation 81.1 37 0.0013 32.0 25.8 69 56-137 75-150 (369)
44 3jro_A Fusion protein of prote 80.8 67 0.0023 34.7 23.6 111 57-190 11-131 (753)
45 3jro_A Fusion protein of prote 80.6 68 0.0023 34.7 22.2 72 56-137 54-131 (753)
46 3sfz_A APAF-1, apoptotic pepti 80.2 89 0.003 35.8 23.8 68 57-137 1005-1073(1249)
47 3no2_A Uncharacterized protein 80.1 38 0.0013 31.5 21.0 29 108-136 86-116 (276)
48 1zgk_A Kelch-like ECH-associat 79.8 14 0.00047 35.0 11.5 16 341-356 255-270 (308)
49 3ii7_A Kelch-like protein 7; p 79.2 14 0.00047 34.8 11.3 17 68-85 94-110 (306)
50 3jrp_A Fusion protein of prote 79.1 44 0.0015 31.6 28.0 238 57-358 13-287 (379)
51 3no2_A Uncharacterized protein 78.8 42 0.0014 31.2 27.4 75 289-364 179-267 (276)
52 2xn4_A Kelch-like protein 2; s 78.7 12 0.00039 35.3 10.5 17 341-357 244-260 (302)
53 4gga_A P55CDC, cell division c 76.2 61 0.0021 31.8 28.2 69 56-136 148-216 (420)
54 3k26_A Polycomb protein EED; W 75.9 53 0.0018 30.9 23.0 157 55-256 18-191 (366)
55 1zgk_A Kelch-like ECH-associat 75.8 13 0.00045 35.2 10.0 17 119-136 113-129 (308)
56 3jrp_A Fusion protein of prote 71.8 68 0.0023 30.3 25.4 72 56-137 56-133 (379)
57 2pm9_A Protein WEB1, protein t 71.7 74 0.0025 30.6 26.5 124 56-190 68-196 (416)
58 4gqb_B Methylosome protein 50; 71.5 73 0.0025 30.5 22.1 70 111-188 84-155 (344)
59 4gqb_B Methylosome protein 50; 70.6 76 0.0026 30.3 26.4 108 57-188 84-198 (344)
60 2ymu_A WD-40 repeat protein; u 70.5 97 0.0033 31.5 26.6 107 56-188 345-454 (577)
61 2ezd_A High mobility group pro 69.0 4.1 0.00014 22.7 2.4 16 489-504 4-19 (26)
62 1r5m_A SIR4-interacting protei 68.6 85 0.0029 30.1 29.2 68 57-137 110-179 (425)
63 1yfq_A Cell cycle arrest prote 68.3 77 0.0026 29.5 26.9 164 56-258 57-226 (342)
64 3mkq_A Coatomer beta'-subunit; 67.8 1.3E+02 0.0046 32.1 28.5 232 57-358 15-259 (814)
65 3mkq_A Coatomer beta'-subunit; 67.3 1.4E+02 0.0047 32.0 26.9 111 56-189 56-170 (814)
66 4asc_A Kelch repeat and BTB do 67.1 73 0.0025 29.8 13.1 59 295-356 189-251 (315)
67 2woz_A Kelch repeat and BTB do 66.6 26 0.00089 33.1 9.8 18 341-358 246-263 (318)
68 3v7d_B Cell division control p 65.8 1.1E+02 0.0037 30.2 36.0 240 56-357 163-420 (464)
69 4gga_A P55CDC, cell division c 65.5 1E+02 0.0036 30.0 29.6 60 67-137 115-177 (420)
70 3zwl_B Eukaryotic translation 58.9 1.2E+02 0.004 28.3 29.4 79 46-137 24-104 (369)
71 2xn4_A Kelch-like protein 2; s 58.6 76 0.0026 29.4 11.4 16 341-356 197-212 (302)
72 4g56_B MGC81050 protein; prote 57.7 1.3E+02 0.0045 28.6 29.6 234 57-359 96-344 (357)
73 1xip_A Nucleoporin NUP159; bet 57.7 81 0.0028 31.2 11.6 65 112-190 90-154 (388)
74 1k8k_C P40, ARP2/3 complex 41 56.4 1.3E+02 0.0045 28.1 22.4 252 55-358 8-274 (372)
75 3f3f_A Nucleoporin SEH1; struc 56.2 1.2E+02 0.0041 27.7 24.0 80 56-138 58-143 (351)
76 3uc1_A DNA gyrase subunit A; D 55.9 1.4E+02 0.0049 28.5 17.8 169 57-254 43-225 (327)
77 3i2n_A WD repeat-containing pr 54.0 1.4E+02 0.0047 27.7 24.2 71 56-137 19-98 (357)
78 1suu_A DNA gyrase subunit A; t 54.0 1.5E+02 0.0051 28.1 19.2 181 54-262 45-236 (312)
79 4aez_A CDC20, WD repeat-contai 53.8 1.6E+02 0.0055 28.4 27.8 147 59-256 97-247 (401)
80 3i2n_A WD repeat-containing pr 52.6 1.5E+02 0.005 27.5 22.9 71 110-191 19-99 (357)
81 1xip_A Nucleoporin NUP159; bet 52.3 1.2E+02 0.004 30.0 11.7 138 231-400 90-230 (388)
82 3no0_A DNA gyrase subunit A; D 47.5 1.8E+02 0.006 27.0 19.4 169 54-258 22-197 (276)
83 3iz6_a 40S ribosomal protein R 45.7 2.1E+02 0.0071 27.3 20.8 58 295-357 311-374 (380)
84 1pgu_A Actin interacting prote 45.3 2.6E+02 0.0088 28.3 24.9 27 230-256 255-282 (615)
85 1zvt_A Topoisomerase IV subuni 45.1 1.8E+02 0.0063 26.6 12.0 132 54-195 31-167 (256)
86 3vl1_A 26S proteasome regulato 44.1 2.2E+02 0.0075 27.2 26.9 71 55-137 139-211 (420)
87 2j04_A TAU60, YPL007P, hypothe 43.2 3.1E+02 0.011 28.6 16.1 160 55-256 85-253 (588)
88 1q7f_A NHL, brain tumor CG1071 43.0 1.2E+02 0.004 27.5 9.8 11 17-27 86-96 (286)
89 4asc_A Kelch repeat and BTB do 40.9 65 0.0022 30.2 7.7 16 120-136 91-106 (315)
90 2uvk_A YJHT; unknown function, 40.8 83 0.0028 30.0 8.6 17 340-356 110-126 (357)
91 2xyi_A Probable histone-bindin 40.3 2.7E+02 0.0092 27.1 27.0 254 57-357 130-409 (430)
92 3v7d_B Cell division control p 38.9 2.8E+02 0.0097 27.0 36.2 248 58-358 125-381 (464)
93 2woz_A Kelch repeat and BTB do 38.9 1.4E+02 0.0047 27.8 9.7 62 295-357 102-167 (318)
94 4ery_A WD repeat-containing pr 37.5 2.4E+02 0.0082 25.7 30.5 69 56-136 24-94 (312)
95 4h5i_A Guanine nucleotide-exch 36.8 2.8E+02 0.0096 26.3 13.3 300 17-354 23-339 (365)
96 3mmy_A MRNA export factor; mRN 35.8 2.6E+02 0.009 25.7 23.9 108 56-190 87-198 (368)
97 2aq5_A Coronin-1A; WD40 repeat 35.3 3E+02 0.01 26.2 25.9 156 115-311 40-205 (402)
98 1got_B GT-beta; complex (GTP-b 34.7 2.9E+02 0.0098 25.7 28.9 69 56-136 56-126 (340)
99 1q7f_A NHL, brain tumor CG1071 34.2 2.6E+02 0.0088 25.1 21.8 12 298-309 212-223 (286)
100 2ymu_A WD-40 repeat protein; u 33.1 3.9E+02 0.013 26.8 31.7 66 57-135 223-290 (577)
101 1vyh_C Platelet-activating fac 31.1 3.7E+02 0.013 25.9 28.8 66 57-136 152-221 (410)
102 1pgu_A Actin interacting prote 30.8 4.3E+02 0.015 26.6 30.5 93 67-190 309-401 (615)
103 1sq9_A Antiviral protein SKI8; 30.6 3.4E+02 0.012 25.4 27.3 74 56-137 17-99 (397)
104 4ggc_A P55CDC, cell division c 30.3 3E+02 0.01 24.7 29.8 59 67-136 35-96 (318)
105 4g56_B MGC81050 protein; prote 27.4 3.9E+02 0.013 25.1 33.7 50 300-355 245-298 (357)
106 3vl1_A 26S proteasome regulato 25.4 4.4E+02 0.015 24.9 33.0 68 287-358 293-365 (420)
107 4ery_A WD repeat-containing pr 24.3 4E+02 0.014 24.1 28.2 69 56-136 66-136 (312)
108 1ub1_A MECP2, attachment regio 24.2 64 0.0022 26.5 3.5 15 504-518 117-131 (133)
109 3p6j_A De novo designed beta-t 22.7 3.3E+02 0.011 22.5 11.2 67 109-187 29-97 (142)
110 3ukx_C Bimax2 peptide; arm rep 22.2 75 0.0026 17.5 2.4 6 513-518 6-11 (28)
111 2aq5_A Coronin-1A; WD40 repeat 21.2 5.3E+02 0.018 24.4 29.8 108 67-190 44-162 (402)
112 3bbo_G Ribosomal protein L4; l 21.1 20 0.00069 33.9 0.0 25 457-481 265-289 (293)
113 1got_B GT-beta; complex (GTP-b 20.4 5.1E+02 0.017 23.9 31.8 112 57-188 99-212 (340)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-68 Score=551.00 Aligned_cols=361 Identities=26% Similarity=0.484 Sum_probs=317.2
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 95 (539)
..+||+||+||.|.+||||.+. ......|.++..+...+|++|++| ..|+++|+++|+||+||.|.+||||++..
T Consensus 16 l~~~G~v~~wG~n~~GqLG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~ 90 (389)
T 3kci_A 16 FQGSGTIYGWGHNHRGQLGGIE---GAKVKVPTPCEALATLRPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGT 90 (389)
T ss_dssp -----CEEEEEECTTSTTSSCS---CSEEEEEEECHHHHHTCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSS
T ss_pred ECCCCeEEEeeCCCCccCCCCc---CccccCCEecccccCCceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCc
Confidence 4799999999999999999875 245667888887777889999955 99999999999999999999999999998
Q ss_pred CCcccceEeccCCCC--cEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCe
Q 009248 96 IQRDRPTIVSELSKY--KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADF 172 (539)
Q Consensus 96 ~~~~~P~~v~~~~~~--~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~ 172 (539)
.....|.+++.+... ++++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||..|
T Consensus 91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~h 170 (389)
T 3kci_A 91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAH 170 (389)
T ss_dssp CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSE
T ss_pred CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCe
Confidence 888899999987765 457899999999999999999999999999999998877766766665543 59999999999
Q ss_pred eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCC--CeeEEEccCCcE
Q 009248 173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYV 250 (539)
Q Consensus 173 s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~v 250 (539)
+++|+ .+| +||+||.|.+||||++.... ...|..+..+.+.+|++|+||. .|+++|+++|+|
T Consensus 171 s~alt-~~G-~v~~wG~n~~GqLG~~~~~~--------------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v 234 (389)
T 3kci_A 171 SACVT-AAG-DLYTWGKGRYGRLGHSDSED--------------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV 234 (389)
T ss_dssp EEEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEE
T ss_pred EEEEe-CCC-eEEEeCCCCCCCcCCCCCcc--------------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEE
Confidence 99999 899 99999999999999987642 4568888888888999999995 899999999999
Q ss_pred EEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCC------CCCCccceee
Q 009248 251 YTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKP 324 (539)
Q Consensus 251 y~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~------~~~~~~~P~~ 324 (539)
|+||.|.+||||.+.......|.+|..+... .|++|+||..|+++|+++|+||+||.|.. .......|.+
T Consensus 235 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~ 310 (389)
T 3kci_A 235 WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL----GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ 310 (389)
T ss_dssp EEEECCGGGTTSSSSCCCEEEEEECGGGTTS----CEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred EEEeCCCCCCCCCCCCCCccccEEecccCCC----cEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeE
Confidence 9999999999999988888899999877654 35799999999999999999999999862 2345677999
Q ss_pred eccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCC
Q 009248 325 LMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT 403 (539)
Q Consensus 325 v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g 403 (539)
+..+.+.+|++|+||.+|+++++ +|+||+||+|.+||||.+.. .....|++|..+.+.+|++|+||.+||++|++++
T Consensus 311 v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTT--NAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp CGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSC--CCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred eccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCC--CCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 99999889999999999999999 99999999999999999987 6678899999999999999999999999998764
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.7e-64 Score=526.88 Aligned_cols=370 Identities=22% Similarity=0.366 Sum_probs=303.8
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 95 (539)
..++|+||+||.|.+||||++... .....|..+..+ .+|++|+ ||.+|+++|+++|+||+||.|.+||||.+..
T Consensus 23 l~~~g~v~~wG~n~~GqLG~g~~~--~~~~~P~~v~~~--~~i~~va--~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~ 96 (413)
T 1a12_A 23 STEPGLVLTLGQGDVGQLGLGENV--MERKKPALVSIP--EDVVQAE--AGGMHTVCLSKSGQVYSFGCNDEGALGRDTS 96 (413)
T ss_dssp CCCCBEEEEEEECTTSTTCSCTTC--CEEEEEEEECCS--SCEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSCCC
T ss_pred ecCCCcEEEEECCCCCcCCCCCCc--cccccceEccCC--CCeEEEE--eCCCeEEEEcCCCCEEEEECCCCCCCCCCCC
Confidence 368999999999999999998632 235678888754 5899999 5599999999999999999999999999876
Q ss_pred C--CcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeec--CCCCCCCCCCCCCcccccceeec-cCceEEEEeCC
Q 009248 96 I--QRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLGSGSIRNEIEPSPVRCL-VSEVTATACGA 170 (539)
Q Consensus 96 ~--~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~-~~~i~~ia~G~ 170 (539)
. ....|.+|.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+...... ..|..++ ..+|++|+||.
T Consensus 97 ~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~-~~P~~v~~~~~i~~ia~G~ 173 (413)
T 1a12_A 97 VEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKS-MVPVQVQLDVPVVKVASGN 173 (413)
T ss_dssp STTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCE-EEEEEECCSSCEEEEEECS
T ss_pred CCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccc-cCCEEecCCCCEEEEEecC
Confidence 3 4567888854 2379999999999999999999999999 999999987654322 2233333 34699999999
Q ss_pred CeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeeccc-----CCCeEEEEEeCCCeeEEEc
Q 009248 171 DFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAAL-----AGETIVKVACGTNHTVAVD 245 (539)
Q Consensus 171 ~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~-----~~~~I~~Ia~G~~hs~alt 245 (539)
+|+++|+ .+| +||+||.|.+||||.+......... .........|..+... ...+|++|+||.+|++||+
T Consensus 174 ~hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~~~~---~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt 248 (413)
T 1a12_A 174 DHLVMLT-ADG-DLYTLGCGEQGQLGRVPELFANRGG---RQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAIS 248 (413)
T ss_dssp SEEEEEE-TTS-CEEEEECCTTSTTCSCGGGTSSSCG---GGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEE
T ss_pred ceEEEEc-CCC-CEEEeeCCCCCccCCCccccccccc---cccccccccCceEeeccccccCCccEEEEEeCCCEEEEEe
Confidence 9999999 899 9999999999999987543211100 0000122345444332 3468999999999999999
Q ss_pred cCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCC-------CCCC
Q 009248 246 SKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN-------NGDD 318 (539)
Q Consensus 246 ~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~-------~~~~ 318 (539)
++|+||+||.|.+||||++.......|++|..+... ...|++|+||..|+++|+.+|+||+||.|.. ....
T Consensus 249 ~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~--~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~ 326 (413)
T 1a12_A 249 HEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS--TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE 326 (413)
T ss_dssp TTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT--TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC
T ss_pred CCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCC--CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCcc
Confidence 999999999999999999988888899999877652 1246899999999999999999999999863 2234
Q ss_pred ccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeecc--CCCCEEEEEEecCCc
Q 009248 319 WMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVISVACGYGH 395 (539)
Q Consensus 319 ~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~--l~~~~v~~va~G~~h 395 (539)
...|.+|..+. +|++|+||.+|+++|+ +|+||+||.|.+||||.+.. .....|++|.. +.+.+|++|+||.+|
T Consensus 327 ~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~--~~~~~P~~v~~~~~~~~~v~~v~~G~~h 402 (413)
T 1a12_A 327 KSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD--EDAWSPVEMMGKQLENRVVLSVSSGGQH 402 (413)
T ss_dssp EEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--SCEEEEEECCSTTTTTEEEEEEEECSSE
T ss_pred ccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC--CCcccCeEccccccCCCeEEEEeeCCCc
Confidence 56788888776 8999999999999999 99999999999999999987 56788988874 567799999999999
Q ss_pred eEEEEcCCcc
Q 009248 396 SLVIVDRTNV 405 (539)
Q Consensus 396 t~~l~~~g~v 405 (539)
|++|+.++++
T Consensus 403 t~~l~~~g~~ 412 (413)
T 1a12_A 403 TVLLVKDKEQ 412 (413)
T ss_dssp EEEEEEECSC
T ss_pred EEEEEecCCC
Confidence 9999999874
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.6e-64 Score=524.32 Aligned_cols=363 Identities=20% Similarity=0.313 Sum_probs=303.0
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~ 96 (539)
.++|+||+||.|.+||||++.+ ......|.++..+. .|++|+ ||..|+++|+++|+||+||.|.+||||.+...
T Consensus 40 ~~~G~v~~wG~n~~GqLG~g~~--~~~~~~p~~v~~l~--~v~~va--~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~ 113 (423)
T 3mvd_K 40 TVLGNVLVCGNGDVGQLGLGED--ILERKRLSPVAGIP--DAVDIS--AGGMHNLVLTKSGDIYSFGCNDEGALGRDTSE 113 (423)
T ss_dssp CCCEEEEEEEECTTSTTCSCSS--CCEEEEEEECCSCS--SEEEEE--ECSSEEEEEETTSCEEEEECCSSSTTCSCCCS
T ss_pred cCCCcEEEEeCCCCCCCCCCCC--CccCcCCeEccCCC--CceEEe--eCCCeEEEEeCCCeEEEeECCCCcCCCCCCcC
Confidence 6899999999999999999853 23456788888776 588898 56999999999999999999999999999775
Q ss_pred C--cccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeec--CCCCCCCCCCCCCcccccceeecc-CceEEEEeCCC
Q 009248 97 Q--RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLGSGSIRNEIEPSPVRCLV-SEVTATACGAD 171 (539)
Q Consensus 97 ~--~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~~~~~~~~-~~i~~ia~G~~ 171 (539)
. ...|.+|... .+|++|+||.+|+++|+++|+||+||. |.+||||.+..... +.|+..+. .+|++|+||.+
T Consensus 114 ~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~--~~p~~~~~~~~i~~va~G~~ 189 (423)
T 3mvd_K 114 DGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK--RTPIDLMEGTVCCSIASGAD 189 (423)
T ss_dssp TTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCE--EEEEESSTTCCEEEEEECSS
T ss_pred CccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC--ceeeEecCCCcEEEEecCCC
Confidence 4 5678888753 369999999999999999999999999 99999999876554 44444443 45999999999
Q ss_pred eeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEE-ccCCcE
Q 009248 172 FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAV-DSKGYV 250 (539)
Q Consensus 172 ~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~al-t~~G~v 250 (539)
|+++|+ .+| +||+||.|.+||||.+.......... ........|..+..+...+|++|+||.+|++++ +.+|.|
T Consensus 190 hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~~~~~---~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v 264 (423)
T 3mvd_K 190 HLVILT-TAG-KVFTVGCAEQGQLGRLSERSISGEGR---RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVI 264 (423)
T ss_dssp EEEEEE-TTS-CEEEEECCTTSTTSSCCTTTTTSCST---TTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCE
T ss_pred eEEEEe-cCC-eEEEeeCCcCCccCCCcccccccccc---cccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeE
Confidence 999999 899 99999999999999987643221111 111345678888777778899999999999999 799999
Q ss_pred EEEecCCCCCCCCCCCCCc--cccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCC-------CCCCccc
Q 009248 251 YTWGFGGYGRLGHREQKDE--WVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN-------NGDDWMY 321 (539)
Q Consensus 251 y~wG~n~~GqLG~~~~~~~--~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~-------~~~~~~~ 321 (539)
|+||.|.+||||.+..... ..|.++. ...|++|+||..|+++|+.+|+||+||.|.. .......
T Consensus 265 ~~wG~n~~gqlg~~~~~~~~~~~p~~~~-------~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~ 337 (423)
T 3mvd_K 265 WATGLNNFKQLAHETKGKEFALTPIKTE-------LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337 (423)
T ss_dssp EEEEECTTCTTSSCCTTCSEEEEEEEEC-------CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEE
T ss_pred EEEeCCCCCcCCCCCCCCceeeeeEEcC-------CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccC
Confidence 9999999999999654433 3455443 2357899999999999999999999999863 1122457
Q ss_pred eeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeecc--CCCCEEEEEEecCCceEE
Q 009248 322 PKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVISVACGYGHSLV 398 (539)
Q Consensus 322 P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~--l~~~~v~~va~G~~ht~~ 398 (539)
|.++..+.+ +|++|+||.+|++||+ +|+||+||.|.+||||+++. .....|++|.. +.+.+|++|+||.+||++
T Consensus 338 p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~ 414 (423)
T 3mvd_K 338 PTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDG--DDELEPIVVVSKNTQGKHMLLASGGGQHAIF 414 (423)
T ss_dssp EEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSS--CCEEEEEECCSTTTTTCCEEEEEECSSEEEE
T ss_pred ceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCC--CCcccCeEEeCcccCCCEEEEEEECCCcEEE
Confidence 888888877 8999999999999999 99999999999999999987 66778999875 677899999999999999
Q ss_pred EEcCCc
Q 009248 399 IVDRTN 404 (539)
Q Consensus 399 l~~~g~ 404 (539)
|+++++
T Consensus 415 l~~~~k 420 (423)
T 3mvd_K 415 LVKADK 420 (423)
T ss_dssp EEECC-
T ss_pred EEcccc
Confidence 999875
No 4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5.4e-64 Score=521.44 Aligned_cols=339 Identities=28% Similarity=0.511 Sum_probs=302.3
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCC-cEEEEeCCCCCccCCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEG-RCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G-~vy~wG~n~~GqLG~g~~ 95 (539)
.++|+||+||.|.+||||++.. .....|.++..+.+.+|++|+ ||..|+++|+.+| +||+||.|.+||||.+..
T Consensus 32 ~~~g~v~~wG~n~~GqLG~g~~---~~~~~P~~v~~l~~~~i~~va--~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~ 106 (406)
T 4d9s_A 32 LSGDIVCSWGRGEDGQLGHGDA---EDRPSPTQLSALDGHQIVSVT--CGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS 106 (406)
T ss_dssp ETTTEEEEEECCTTSTTCSSSC---CCEEEEEECGGGTTSCEEEEE--ECSSEEEEEETTTTEEEEEECCGGGTTCSSSC
T ss_pred EeCCEEEEEeCCCCCCCCCCCc---ccCcCCEEecccCCCCEEEEE--eCcceEEEEECCCCEEEEEcCCCCcCCCCCCC
Confidence 5899999999999999999863 456789999988888999999 6699999999986 999999999999999998
Q ss_pred CCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCeeE
Q 009248 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTV 174 (539)
Q Consensus 96 ~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~s~ 174 (539)
.....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||.+|++
T Consensus 107 ~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~ 186 (406)
T 4d9s_A 107 SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 186 (406)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEE
T ss_pred CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEE
Confidence 888899999999888999999999999999999999999999999999998877777766665543 5999999999999
Q ss_pred EEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEe
Q 009248 175 WLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWG 254 (539)
Q Consensus 175 ~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG 254 (539)
+|+ .+| +||+||.|.+||||++.... ...|..+..+...+|++|+||.+|+++|+.+|+||+||
T Consensus 187 alt-~~G-~v~~wG~n~~GqlG~g~~~~--------------~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 187 AVT-EDG-DLYGWGWGRYGNLGLGDRTD--------------RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp EEE-TTS-CEEEEECCTTSTTCSSSSCC--------------EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred EEe-CCC-CEEEeeCCCCCCCCCCCCCC--------------cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 999 899 99999999999999987543 34677787777789999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCC------CCCccceeeeccC
Q 009248 255 FGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN------GDDWMYPKPLMDL 328 (539)
Q Consensus 255 ~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~------~~~~~~P~~v~~l 328 (539)
.|.+||||++.......|++|..+... .|++|+||..|+++|+++|+||+||.|... ......|.++..+
T Consensus 251 ~n~~GqlG~g~~~~~~~p~~v~~~~~~----~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIPHKLEALSNS----FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTS----CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred CCCCCCCCCCCCcCccccEEecccCCC----CEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 999999999988888899999877653 357999999999999999999999998732 2345678888777
Q ss_pred CCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCC
Q 009248 329 SGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILE 382 (539)
Q Consensus 329 ~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~ 382 (539)
...+|++|+||.+|++||+ +|+||+||+|.+||||++.. .....|++|+.+.
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~l~ 379 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES--VDRNFPKIIEALS 379 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--CCEEEEEECGGGC
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCC--CCCcCCEEeeeec
Confidence 7778999999999999999 99999999999999999987 5677888888753
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-64 Score=531.44 Aligned_cols=362 Identities=22% Similarity=0.342 Sum_probs=294.9
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCC--CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD 94 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~--~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~ 94 (539)
.++|+||+||.|.+||||++..........|..++.+ ...+|++|+ ||.+|+++|+++|+||+||.|.+||||.+.
T Consensus 26 ~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va--~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~ 103 (473)
T 3of7_A 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFA--VGGMHTLALDEESNVWSWGCNDVGALGRDT 103 (473)
T ss_dssp SSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEE--ECSSEEEEEETTCCEEEEECCTTSTTCSCC
T ss_pred CCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEE--eCCCeEEEEecCCeEEEeECCCCCCCCCCC
Confidence 5799999999999999999963323345678777766 456889999 669999999999999999999999999987
Q ss_pred CCC-----------------------cccceEecc--C----CCCcEEEEEeCCceeEEEecCCCEEEeec--CCCCCCC
Q 009248 95 KIQ-----------------------RDRPTIVSE--L----SKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLG 143 (539)
Q Consensus 95 ~~~-----------------------~~~P~~v~~--~----~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~--n~~gqlG 143 (539)
... ...|.+|+. | ...+|++|+||.+|+++|+++|+||+||. +.+||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG 183 (473)
T 3of7_A 104 SNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILG 183 (473)
T ss_dssp C---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEE
T ss_pred cccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccC
Confidence 654 457888875 5 36789999999999999999999999998 6899999
Q ss_pred CCCCCCc--ccccceeecc-CceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCc
Q 009248 144 SGSIRNE--IEPSPVRCLV-SEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRP 220 (539)
Q Consensus 144 ~~~~~~~--~~~~~~~~~~-~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p 220 (539)
.+..... ..|.+++.+. .+|++|+||..|+++|+ .+| +||+||.|.+||||.+...... .....|
T Consensus 184 ~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~----------~~~~~p 251 (473)
T 3of7_A 184 FYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD-EEG-MVFAWGNGQQNQLGRKVMERFR----------LKTLDP 251 (473)
T ss_dssp SBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE-TTS-CEEEEECCTTSTTSSCCCGGGT----------TTTCSC
T ss_pred CCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEe-CCC-eEEEEeCCCCCCCCCCcccccc----------ccccCc
Confidence 8554333 3344443333 24999999999999999 899 9999999999999988653211 123345
Q ss_pred eeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCC----CccccEEecccccCCCCCCceEEEecCCc
Q 009248 221 RAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK----DEWVPRRVDVFQRNNVLPPEAVISAGSVN 296 (539)
Q Consensus 221 ~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~----~~~~p~~v~~~~~~~~~~~v~~I~~G~~~ 296 (539)
..+.. .+|++|+||.+|++||+++|+||+||.|.+||||++... ....|++|..+... .|++|+||..|
T Consensus 252 ~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~----~i~~ia~G~~h 324 (473)
T 3of7_A 252 RPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV----VIRSIAAGEHH 324 (473)
T ss_dssp EECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTC----CEEEEEECSSE
T ss_pred eecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCc----cEEEEEeCCCe
Confidence 55432 579999999999999999999999999999999997654 23578888765543 46799999999
Q ss_pred eEEEeCCCcEEEecCCCCCCC--------------------CccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEe
Q 009248 297 SSCTAGGGQLYMWGKLKNNGD--------------------DWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWG 355 (539)
Q Consensus 297 s~~lt~~G~vy~wG~n~~~~~--------------------~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG 355 (539)
+++|+.+|+||+||.|....- ....|..+..+. +|++|+||.+|++||+ +|+||+||
T Consensus 325 s~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp EEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 999999999999999863211 123566665544 7999999999999999 99999999
Q ss_pred CCCCCccCCCCCCCCCcCCCeeec--cCCCCEEEEEEecCCceEEEEcC
Q 009248 356 HAQYGELGYGPYGQKSSAMPKKVD--ILEGMHVISVACGYGHSLVIVDR 402 (539)
Q Consensus 356 ~n~~GqLG~g~~~~~~~~~P~~v~--~l~~~~v~~va~G~~ht~~l~~~ 402 (539)
.|.+||||++.. ......|++|. .+.+.+|++|+||.+||+++...
T Consensus 403 ~n~~GqLG~g~~-~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 403 FGETYAVGLGPF-EDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp CCTTCTTCCCSC-CSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CCCCCCCCCCCC-CccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 999999999983 36778899998 45677999999999999999864
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.3e-63 Score=518.47 Aligned_cols=341 Identities=30% Similarity=0.560 Sum_probs=306.0
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCC-CEEE
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDG-NSLA 133 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G-~vy~ 133 (539)
..+|++|+ ||..|+++|+++|+||+||.|.+||||++.......|+++..+...+|++|+||.+|+++|+++| +||+
T Consensus 15 ~~~v~~ia--~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIIS--AGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEE--ECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEe--cCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 35899999 55999999999999999999999999999999999999999988889999999999999999986 9999
Q ss_pred eecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccc
Q 009248 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (539)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~ 212 (539)
||.|.+||||.+.......|.++..+.. +|++|+||..|+++|+ .+| +||+||.|.+||||++....
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt-~~G-~v~~wG~n~~GqLG~g~~~~---------- 160 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-MEG-EVQSWGRNQNGQLGLGDTED---------- 160 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEE-TTS-CEEEEECCTTSTTCSSSCCC----------
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEc-CCC-cEEEeCCCCCccCCCCCCCC----------
Confidence 9999999999998877777777766644 5999999999999999 899 99999999999999987542
Q ss_pred cccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEe
Q 009248 213 AYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISA 292 (539)
Q Consensus 213 ~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~ 292 (539)
...|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||++.......|.+|..+... .+++|+|
T Consensus 161 ----~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~----~i~~va~ 232 (406)
T 4d9s_A 161 ----SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE----KMSMVAC 232 (406)
T ss_dssp ----EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTC----CEEEEEE
T ss_pred ----cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCc----eEEEEEE
Confidence 35688888888889999999999999999999999999999999999998888899998766543 4679999
Q ss_pred cCCceEEEeCCCcEEEecCCCC------CCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCC
Q 009248 293 GSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYG 365 (539)
Q Consensus 293 G~~~s~~lt~~G~vy~wG~n~~------~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g 365 (539)
|..|+++|+.+|+||+||.|.. .......|.++..+.+..|++|+||.+|+++|+ +|+||+||+|.+||||.+
T Consensus 233 G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 9999999999999999999874 234567899999999889999999999999999 999999999999999998
Q ss_pred CCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCccccccccceeecCCCCCC-cccc
Q 009248 366 PYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQ-DNEE 426 (539)
Q Consensus 366 ~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~~~~~-~~~~ 426 (539)
.. .....|++|..+...+|++|+||.+|+++|+++|+ +|.|+.+..+| +.++
T Consensus 313 ~~--~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~-------v~~wG~n~~GqLG~g~ 365 (406)
T 4d9s_A 313 NN--LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNN-------VFAWGRGTNGQLGIGE 365 (406)
T ss_dssp SS--SCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSC-------EEEEECCTTSTTCSSS
T ss_pred CC--CCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCC-------EEEecCCCCCccCCCC
Confidence 87 56678888887777799999999999999999998 89999988887 4443
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-60 Score=491.36 Aligned_cols=327 Identities=28% Similarity=0.507 Sum_probs=284.5
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGS 146 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~ 146 (539)
..++++|+++|+||+||.|.+||||.++......|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus 10 ~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 10 GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp -----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS
T ss_pred cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC
Confidence 67899999999999999999999999888888899999888888899999999999999999999999999999999998
Q ss_pred CCCcccccceeeccC---ceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceee
Q 009248 147 IRNEIEPSPVRCLVS---EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAI 223 (539)
Q Consensus 147 ~~~~~~~~~~~~~~~---~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i 223 (539)
......|.++..+.. ++++|+||..|+++|+ .+| +||+||.|.+||||++.... ...|..+
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~-~~G-~v~~wG~n~~GqLG~g~~~~--------------~~~p~~v 153 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS-SEG-EVYSWGEAEDGKLGHGNRSP--------------CDRPRVI 153 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------EEEEEEC
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEc-CCC-CEEEEeCCCCCcCCCCCCcc--------------CcCCeEe
Confidence 777666666655433 3578999999999999 899 99999999999999987542 3568888
Q ss_pred cccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecC--CceEEEe
Q 009248 224 AALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGS--VNSSCTA 301 (539)
Q Consensus 224 ~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~--~~s~~lt 301 (539)
..+.+.+|++|+||.+|++||+++|+||+||.|.+||||++.......|++|..+.... +++|+||. .|+++|+
T Consensus 154 ~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~----v~~ia~G~g~~~t~~l~ 229 (389)
T 3kci_A 154 ESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHR----VVDIACGSGDAQTLCLT 229 (389)
T ss_dssp GGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSC----EEEEEECCSSCEEEEEE
T ss_pred cccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCe----EEEEEEcCCCcEEEEEc
Confidence 88888899999999999999999999999999999999999988888999998776543 56999995 8999999
Q ss_pred CCCcEEEecCCCC------CCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCC
Q 009248 302 GGGQLYMWGKLKN------NGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAM 374 (539)
Q Consensus 302 ~~G~vy~wG~n~~------~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~ 374 (539)
++|+||+||.|.. .......|.++..+.+.+|++|+||.+|++||+ +|+||+||.|.+||||.+.. .....
T Consensus 230 ~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~--~~~~~ 307 (389)
T 3kci_A 230 DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD--DHVRR 307 (389)
T ss_dssp TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC--CCEEE
T ss_pred cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC--ccccC
Confidence 9999999999863 234457899999999889999999999999999 99999999999999999986 67788
Q ss_pred CeeeccCCCCEEEEEEecCCceEEEEcCCccccccccceeecCCCCCC
Q 009248 375 PKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQ 422 (539)
Q Consensus 375 P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~~~~~ 422 (539)
|++|..+.+.+|++|+||.+|+++|+++|+ +|.|+.+..+|
T Consensus 308 P~~v~~l~~~~v~~ia~G~~h~~al~~~G~-------v~~wG~n~~Gq 348 (389)
T 3kci_A 308 PRQVQGLQGKKVIAIATGSLHCVCCTEDGE-------VYTWGDNDEGQ 348 (389)
T ss_dssp EEECGGGTTCCEEEEEECSSEEEEEETTCC-------EEEEECCTTST
T ss_pred CeEeccCCCCCEEEEEeccCeEEEECCCCC-------EEEeeCCCCCc
Confidence 999999988899999999999999999998 89999988887
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.7e-58 Score=478.81 Aligned_cols=330 Identities=22% Similarity=0.341 Sum_probs=274.1
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC-CCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEE
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK-IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLA 133 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~-~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~ 133 (539)
..+++.|+ ||..|+++|+++|+||+||.|.+||||++.. .....|.+|+.+.+ |++|+||..|+++|+++|+||+
T Consensus 23 ~~~~~~ia--~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~--v~~va~G~~h~~~l~~~G~v~~ 98 (423)
T 3mvd_K 23 KAKRARIA--FHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPD--AVDISAGGMHNLVLTKSGDIYS 98 (423)
T ss_dssp ------CC--CCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSS--EEEEEECSSEEEEEETTSCEEE
T ss_pred cceeeEEe--cCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCC--ceEEeeCCCeEEEEeCCCeEEE
Confidence 34677788 7799999999999999999999999999965 44578888887765 8999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCcccccceeec-cCceEEEEeCCCeeEEEEccCCceEEecCC--CCccccCCCCCCCCcccCCcc
Q 009248 134 FGWNKHGQLGSGSIRNEIEPSPVRCL-VSEVTATACGADFTVWLSSVEGASILNAGL--PQYGQLGHGTDNEYNTKDSSV 210 (539)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~~~~-~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~--n~~GqLG~~~~~~~~~~~~~~ 210 (539)
||.|.+||||.+.........|..+. ..+|++|+||..|+++|+ .+| +||+||. |.+||||.+....
T Consensus 99 wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~-~~G-~v~~wG~~~n~~GqlG~~~~~~-------- 168 (423)
T 3mvd_K 99 FGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLL-EDG-RVFAWGSFRDSHGNMGLTIDGN-------- 168 (423)
T ss_dssp EECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEE-TTS-CEEEEECEECSSSEEESBTTBC--------
T ss_pred eECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEe-CCC-eEEEEeCCCCCCCCcCcCCCCC--------
Confidence 99999999999887654344444433 356999999999999999 899 9999999 9999999886532
Q ss_pred cccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCC-----------CCccccEEecccc
Q 009248 211 KLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQ-----------KDEWVPRRVDVFQ 279 (539)
Q Consensus 211 ~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~-----------~~~~~p~~v~~~~ 279 (539)
.+.|..+ +...+|++|+||.+|++||+++|+||+||.|.+||||++.. .....|.+|..+.
T Consensus 169 ------~~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~ 240 (423)
T 3mvd_K 169 ------KRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240 (423)
T ss_dssp ------EEEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT
T ss_pred ------CceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC
Confidence 2334433 45678999999999999999999999999999999999754 2445788887654
Q ss_pred cCCCCCCceEEEecCCceEEE-eCCCcEEEecCCCCCC--------CCccceeeeccCCCCcEEEEEcCCcEEEEEe-CC
Q 009248 280 RNNVLPPEAVISAGSVNSSCT-AGGGQLYMWGKLKNNG--------DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DS 349 (539)
Q Consensus 280 ~~~~~~~v~~I~~G~~~s~~l-t~~G~vy~wG~n~~~~--------~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G 349 (539)
.. +|+.|+||..|++++ +.+|+||+||.|.... .....|.++. ..+|++|+||.+|+++|+ +|
T Consensus 241 ~~----~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G 313 (423)
T 3mvd_K 241 AK----PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDL 313 (423)
T ss_dssp CC----CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTC
T ss_pred Cc----cEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCC
Confidence 33 467999999999999 6999999999986321 2233455554 347999999999999999 99
Q ss_pred CEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCccccccccceeecCCCCCC
Q 009248 350 SCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQ 422 (539)
Q Consensus 350 ~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~~~~~ 422 (539)
+||+||.|.+||||++.. ......|++|..+.. +|++|+||.+|+++|+++|+ +|.|+.+..+|
T Consensus 314 ~v~~wG~n~~GqLG~g~~-~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~-------v~~wG~n~~Gq 377 (423)
T 3mvd_K 314 KCSVVGRPEYGRLGLGDV-KDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGK-------LYSWGSGVNNQ 377 (423)
T ss_dssp CEEEEECCGGGTTCSSSC-CSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSC-------EEEEECCTTSC
T ss_pred cEEEEECCCCCCCCCCCc-cccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCC-------EEEECCCCCCC
Confidence 999999999999999986 344568899988876 89999999999999999998 89999988887
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=1.1e-57 Score=475.35 Aligned_cols=327 Identities=25% Similarity=0.367 Sum_probs=272.9
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCC-cccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQ-RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSG 145 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~-~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~ 145 (539)
..|+++|+.+|+||+||.|.+||||++.... ...|++|..+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 17 ~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~ 94 (413)
T 1a12_A 17 VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD 94 (413)
T ss_dssp CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSC
T ss_pred cccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCC
Confidence 7899999999999999999999999998654 5788888764 569999999999999999999999999999999998
Q ss_pred CCCCcccccceee-ccCceEEEEeCCCeeEEEEccCCceEEecCC--CCccccCCCCCCCCcccCCcccccccccCCcee
Q 009248 146 SIRNEIEPSPVRC-LVSEVTATACGADFTVWLSSVEGASILNAGL--PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRA 222 (539)
Q Consensus 146 ~~~~~~~~~~~~~-~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~--n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~ 222 (539)
.........|..+ +..+|++|+||.+|+++|+ .+| +||+||. |.+||||++.... ....|..
T Consensus 95 ~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt-~~G-~v~~wG~~~n~~GqlG~~~~~~-------------~~~~P~~ 159 (413)
T 1a12_A 95 TSVEGSEMVPGKVELQEKVVQVSAGDSHTAALT-DDG-RVFLWGSFRDNNGVIGLLEPMK-------------KSMVPVQ 159 (413)
T ss_dssp CCSTTGGGSCEECCCCSCEEEEEECSSEEEEEE-TTS-CEEEEECEEETTEEEESSBBTB-------------CEEEEEE
T ss_pred CCCCccccCCeEecCCCcEEEEecCCCeEEEEc-CCC-cEEEeeCCcCCCCccCcCCccc-------------cccCCEE
Confidence 7643333333332 2347999999999999999 899 9999999 9999999876432 1234666
Q ss_pred ecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCC-----------ccccEEecccccC-CCCCCceEE
Q 009248 223 IAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD-----------EWVPRRVDVFQRN-NVLPPEAVI 290 (539)
Q Consensus 223 i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~-----------~~~p~~v~~~~~~-~~~~~v~~I 290 (539)
+ +...+|++|+||.+|+++|+++|+||+||.|.+||||++.... ...|+.|...... .....|++|
T Consensus 160 v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~i 237 (413)
T 1a12_A 160 V--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDA 237 (413)
T ss_dssp E--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEE
T ss_pred e--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEE
Confidence 5 3456899999999999999999999999999999999864321 2467666543210 012357899
Q ss_pred EecCCceEEEeCCCcEEEecCCCC------CCCCccceeeeccCCC--CcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCc
Q 009248 291 SAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPLMDLSG--WNLRCMDSGNMHHFVGA-DSSCISWGHAQYGE 361 (539)
Q Consensus 291 ~~G~~~s~~lt~~G~vy~wG~n~~------~~~~~~~P~~v~~l~~--~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~Gq 361 (539)
+||..|+++|+.+|+||+||.|.. .......|..+..+.+ .+|++|+||.+|+++|+ +|+||+||.|.+||
T Consensus 238 a~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~Gq 317 (413)
T 1a12_A 238 FCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 317 (413)
T ss_dssp EEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGT
T ss_pred EeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCc
Confidence 999999999999999999999863 2234577999988876 67999999999999999 99999999999999
Q ss_pred cCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCccccccccceeecCCCCCC
Q 009248 362 LGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQ 422 (539)
Q Consensus 362 LG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~~~~~ 422 (539)
||++.. ......|++|..+. +|++|+||.+|+++|+++|. +|.|+.+..+|
T Consensus 318 LG~g~~-~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~-------v~~wG~n~~gq 368 (413)
T 1a12_A 318 LGLGEG-AEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGR-------VFAWGMGTNYQ 368 (413)
T ss_dssp TCSCTT-CCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSC-------EEEEECCTTST
T ss_pred cCCCCC-CccccCCEEecccC--ceeEEEECcceEEEEeCCCC-------EEEecCCCCCC
Confidence 999854 35677899998876 79999999999999999998 89999988777
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-57 Score=483.03 Aligned_cols=328 Identities=22% Similarity=0.315 Sum_probs=274.5
Q ss_pred CCCcEEEEEecCCcEEEEeCCCCCccCCCCC---CCcccceEeccC--CCCcEEEEEeCCceeEEEecCCCEEEeecCCC
Q 009248 65 CVSCHCVAVDVEGRCYTWGRNERGQLGHGDK---IQRDRPTIVSEL--SKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKH 139 (539)
Q Consensus 65 cG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~---~~~~~P~~v~~~--~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~ 139 (539)
+...|+++++.+|+||+||.|.+||||++.. .....|++++.+ ...+|++|+||..|+++|+++|+||+||.|.+
T Consensus 17 ~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~ 96 (473)
T 3of7_A 17 EDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDV 96 (473)
T ss_dssp GGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTT
T ss_pred ccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCC
Confidence 4488999999999999999999999999985 345678888876 45689999999999999999999999999999
Q ss_pred CCCCCCCCCC-----------------------cccccceee--c-----cCceEEEEeCCCeeEEEEccCCceEEecCC
Q 009248 140 GQLGSGSIRN-----------------------EIEPSPVRC--L-----VSEVTATACGADFTVWLSSVEGASILNAGL 189 (539)
Q Consensus 140 gqlG~~~~~~-----------------------~~~~~~~~~--~-----~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~ 189 (539)
||||.+.... ...|.+++. + ..+|++|+||..|+++|+ .+| +||+||.
T Consensus 97 GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt-~~G-~vy~wG~ 174 (473)
T 3of7_A 97 GALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF-SNG-EVYAWGT 174 (473)
T ss_dssp STTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE-TTS-CEEEEEC
T ss_pred CCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe-CCC-eEEEeeC
Confidence 9999987644 233444443 2 256999999999999999 899 9999998
Q ss_pred --CCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCC
Q 009248 190 --PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK 267 (539)
Q Consensus 190 --n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~ 267 (539)
+.+||||++.... .....|..+..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+...
T Consensus 175 n~~~~GqLG~~~~~~------------~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~ 242 (473)
T 3of7_A 175 FRCNEGILGFYQDKI------------KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVME 242 (473)
T ss_dssp EEETTEEEESBTTTB------------SCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCG
T ss_pred CcCCCCccCCCCCCC------------ccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccc
Confidence 6789999855432 33567888888888889999999999999999999999999999999997643
Q ss_pred C----ccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCC----------CCccceeeeccCCCCcE
Q 009248 268 D----EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG----------DDWMYPKPLMDLSGWNL 333 (539)
Q Consensus 268 ~----~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~----------~~~~~P~~v~~l~~~~i 333 (539)
. ...|..+.. ..|++|+||..|++||+.+|+||+||.|.... .....|.++..+.+.+|
T Consensus 243 ~~~~~~~~p~~~~~-------~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i 315 (473)
T 3of7_A 243 RFRLKTLDPRPFGL-------RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVI 315 (473)
T ss_dssp GGTTTTCSCEECSC-------CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCE
T ss_pred cccccccCceecCC-------cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccE
Confidence 3 446666642 35789999999999999999999999986321 23457899988888899
Q ss_pred EEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCC------------CCCcCCCeeeccCCCCEEEEEEecCCceEEEE
Q 009248 334 RCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYG------------QKSSAMPKKVDILEGMHVISVACGYGHSLVIV 400 (539)
Q Consensus 334 ~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~------------~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~ 400 (539)
++|+||.+|+++|+ +|+||+||.|.+||||++... ......|++|..+. +|++|+||.+|+++|+
T Consensus 316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~ 393 (473)
T 3of7_A 316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVA 393 (473)
T ss_dssp EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEE
T ss_pred EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEe
Confidence 99999999999999 999999999999999987531 12234677766543 6999999999999999
Q ss_pred cCCccccccccceeecCCCCCC
Q 009248 401 DRTNVGERLDQLDVYDGKASSQ 422 (539)
Q Consensus 401 ~~g~v~~~~~~~~~~~~~~~~~ 422 (539)
++|. +|.|+.+..+|
T Consensus 394 ~~G~-------vy~wG~n~~Gq 408 (473)
T 3of7_A 394 QNGI-------AYSWGFGETYA 408 (473)
T ss_dssp TTSC-------EEEEECCTTCT
T ss_pred CCCc-------EEEeeCCCCCC
Confidence 9998 89999988877
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=5.3e-51 Score=401.65 Aligned_cols=274 Identities=22% Similarity=0.335 Sum_probs=219.1
Q ss_pred eEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCccc
Q 009248 21 ELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDR 100 (539)
Q Consensus 21 ~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~ 100 (539)
+||+||.|...++... |. ..+. +|++|+ ||..|+++|+ +|+||+||.|.+||||.
T Consensus 3 ~v~~WG~n~~~~~~~~----------p~--~~~~--~i~~ia--~G~~h~~~l~-~G~v~~wG~n~~Gqlg~-------- 57 (282)
T 3qhy_B 3 SVVAWGGNNDWGEATV----------PA--EAQS--GVDAIA--GGYFHGLALK-GGKVLGWGANLNGQLTM-------- 57 (282)
T ss_dssp EEEEECSCCTTSTTCC----------CG--GGSS--SCCEEE--ECSSEEEEEE-TTEEEEEECCSSSTTSC--------
T ss_pred EEEEeCCCCCcCcccC----------Cc--cccC--CCcEEE--eCCCeEEEEE-CCEEEEEeCCCCCCCCC--------
Confidence 6999999865433321 22 2222 789999 5599999999 99999999999999995
Q ss_pred ceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccC
Q 009248 101 PTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVE 180 (539)
Q Consensus 101 P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~ 180 (539)
|... ..+|++|+||.+|+++|+ +|+||+||.|.+||||.+ .++ ..+|++|+||.+|+++|+ +
T Consensus 58 p~~~----~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P--------~~~---~~~v~~ia~G~~hs~al~--~ 119 (282)
T 3qhy_B 58 PAAT----QSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP--------AEA---RSGVDAIAAGAWASYALK--D 119 (282)
T ss_dssp CGGG----GSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC--------GGG---SSSEEEEEEETTEEEEEE--T
T ss_pred CccC----CCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC--------ccc---CCCeEEEECcCCEEEEEe--C
Confidence 2211 236999999999999996 999999999999999952 222 247999999999999999 8
Q ss_pred CceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCC
Q 009248 181 GASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGR 260 (539)
Q Consensus 181 G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~Gq 260 (539)
| +||+||.|.+||||... . ...+|++|+||.+|+++|+ +|+||+||.|.+||
T Consensus 120 G-~v~~wG~n~~gqlg~~~----------------------~----~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 120 G-KVIAWGDDSDGQTTVPA----------------------E----AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp T-EEEEEECCTTSTTSCCG----------------------G----GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTST
T ss_pred C-eEEEecCCCCCcCCCCc----------------------c----CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCC
Confidence 8 99999999999997321 0 1136999999999999999 89999999999999
Q ss_pred CCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCC
Q 009248 261 LGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGN 340 (539)
Q Consensus 261 LG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~ 340 (539)
||. |..+ ..+|++|+||..|+++| ++|+||+||.|...... .|. ..+. +|++|+||.
T Consensus 172 lg~--------p~~~--------~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg--~p~--~~~~--~v~~i~~G~ 228 (282)
T 3qhy_B 172 TTV--------PAEA--------QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTT--VPT--EALS--GVSAIASGE 228 (282)
T ss_dssp TSC--------CGGG--------GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTC--CCG--GGGS--SCCEEEECS
T ss_pred CCC--------ceec--------CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCC--CCc--ccCC--CceEEEcCC
Confidence 983 2211 13467999999999999 89999999998754433 222 2233 699999999
Q ss_pred cEEEEEeCCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCccc
Q 009248 341 MHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVG 406 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~v~ 406 (539)
.|+++|++|+||+||.|.+||++.. ..|++|+||..|+++|+++++..
T Consensus 229 ~h~~al~~g~v~~wG~n~~gq~~v~------------------~~v~~iaaG~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 229 WYSLALKNGKVIAWGSSRTAPSSVQ------------------SGVSSIEAGPNAAYALKGGSGSG 276 (282)
T ss_dssp SCEEEEETTEEEEESTTCCCCGGGS------------------SCEEEEEECSSCEEEEEC-----
T ss_pred CEEEEEECCEEEEecCCCCccccCC------------------CCcEEEEECcCeEEEEecCCCCC
Confidence 9999999999999999999998641 14899999999999999998743
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.4e-44 Score=355.78 Aligned_cols=235 Identities=22% Similarity=0.336 Sum_probs=192.0
Q ss_pred CceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCc
Q 009248 19 GGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQR 98 (539)
Q Consensus 19 ~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~ 98 (539)
||+||+||.|.+||||++. .. ..+|++|+ ||.+|+++|+ +|+||+||.|.+||||+
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~-----------~~----~~~i~~ia--~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------ 96 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPA-----------AT----QSGVDAIA--AGNYHSLALK-DGEVIAWGGNEDGQTTV------ 96 (282)
T ss_dssp TTEEEEEECCSSSTTSCCG-----------GG----GSCCCEEE--ECSSEEEEEE-TTEEEEEECCTTSTTCC------
T ss_pred CCEEEEEeCCCCCCCCCCc-----------cC----CCCEEEEE--eCCCEEEEEE-CCEEEEeeCCCCCCCCC------
Confidence 8999999999999999632 11 12688999 5699999997 99999999999999985
Q ss_pred ccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEc
Q 009248 99 DRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSS 178 (539)
Q Consensus 99 ~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~ 178 (539)
|..+ ..+|++|+||.+|+++|+ +|+||+||.|.+||||... + ...+|++|+||..|+++|+
T Consensus 97 --P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~----------~-~~~~i~~i~~G~~~~~~l~- 157 (282)
T 3qhy_B 97 --PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA----------E-AQSGVTALDGGVYTALAVK- 157 (282)
T ss_dssp --CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG----------G-GGSSEEEEEECSSEEEEEE-
T ss_pred --Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc----------c-CCCCeEEEEcccCEEEEEE-
Confidence 4433 236999999999999999 9999999999999998421 1 2356999999999999998
Q ss_pred cCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCC
Q 009248 179 VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGY 258 (539)
Q Consensus 179 ~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~ 258 (539)
+| +||+||.|.+||||.. ..+ ..+|++|+||.+|+++| ++|+||+||.|.+
T Consensus 158 -~G-~v~~wG~n~~gqlg~p----------------------~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 158 -NG-GVIAWGDNYFGQTTVP----------------------AEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp -TT-EEEEEECCTTSTTSCC----------------------GGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTT
T ss_pred -CC-EEEEecCCCCCCCCCc----------------------eec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCC
Confidence 68 9999999999999721 111 24799999999999999 8999999999999
Q ss_pred CCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEc
Q 009248 259 GRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS 338 (539)
Q Consensus 259 GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~ 338 (539)
||||.+. + ....|++|+||..|+++|+ +|+||+||.|..... .+ +. .|++|+|
T Consensus 209 gqlg~p~----------~------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~------~v--~~--~v~~iaa 261 (282)
T 3qhy_B 209 KQTTVPT----------E------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAPS------SV--QS--GVSSIEA 261 (282)
T ss_dssp STTCCCG----------G------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCCG------GG--SS--CEEEEEE
T ss_pred CCCCCCc----------c------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCccc------cC--CC--CcEEEEE
Confidence 9998532 1 1224679999999999999 999999999875322 22 22 7999999
Q ss_pred CCcEEEEEe-CCCEE
Q 009248 339 GNMHHFVGA-DSSCI 352 (539)
Q Consensus 339 G~~h~~~lt-~G~vy 352 (539)
|..|++||+ ++..+
T Consensus 262 G~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 262 GPNAAYALKGGSGSG 276 (282)
T ss_dssp CSSCEEEEEC-----
T ss_pred CcCeEEEEecCCCCC
Confidence 999999999 55543
No 13
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.38 E-value=0.0056 Score=56.12 Aligned_cols=126 Identities=21% Similarity=0.210 Sum_probs=82.5
Q ss_pred ccccccCCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCC--------CCCCeEEEEEeCCCcEEEEEecCCcEE
Q 009248 9 MVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--------VGVDIRFVAAGCVSCHCVAVDVEGRCY 80 (539)
Q Consensus 9 ~~~~~~~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~--------~~~~i~~v~~gcG~~h~~~lt~~G~vy 80 (539)
+.+.+...++.-+||+.=-|..|-.-+ ..+..|.-+..- ....|..|+.. ..|.+++--+++||
T Consensus 260 iv~t~~~Ta~~~kv~V~~In~ggniTl------tdV~~t~~v~nh~tg~~~~ansn~i~~VsG~--y~H~vvi~gd~el~ 331 (400)
T 4gbf_A 260 LVAPEDYTSESSKVHVMEIIRNGNDTS------FMVISPLWFDGRGNDVTANVNSNPIGGVSGL--YTHYTVMYGDGQIA 331 (400)
T ss_dssp TSCGGGCCTTTEEEEEEEEEEETTEEE------EEEECCCCBCTTSCBCHHHHHTSCCCCCBCS--SSEEEC-CTTTCCC
T ss_pred eeccCCCcceeeEEEEEEEecCCceEE------EEeeceeEEecCCCCeEEEecCCcccccccc--ccceEEEecCceeE
Confidence 455666667777888764443322111 122333333211 11357778755 88999999999999
Q ss_pred EEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCC---CCCCCCCcccccc
Q 009248 81 TWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQL---GSGSIRNEIEPSP 155 (539)
Q Consensus 81 ~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gql---G~~~~~~~~~~~~ 155 (539)
.||++++||+-.... .-...++.+|.++++-+..-..+-.||......| |.++....+.|+|
T Consensus 332 sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGDSPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 332 FFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGDSPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp EEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCCTTCCSBCCCCCCCC
T ss_pred EeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecCCCCcceeecCccceeeeccCCC
Confidence 999999999854322 1248899999999999999999999998655443 4444444555554
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.71 E-value=0.024 Score=52.09 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=56.5
Q ss_pred CeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEE
Q 009248 229 ETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYM 308 (539)
Q Consensus 229 ~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~ 308 (539)
.+|..|+.-..|.+++--+++||.||++++|||-.....- +..++.+|..+++-+..-+.+-.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag-----------------Pfla~~AG~~fTVTVn~~nyv~F 371 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG-----------------PYIQLAAGHNFTVTVNTLNQVMF 371 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC-----------------CEEEEEECSSEEEEEETTCCEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc-----------------hHHhHhccCCeEEEEeceeeEEE
Confidence 4688899999999999999999999999999997643221 22489999999999999999999
Q ss_pred ecCCC
Q 009248 309 WGKLK 313 (539)
Q Consensus 309 wG~n~ 313 (539)
||...
T Consensus 372 WGDSP 376 (400)
T 4gbf_A 372 WGDSP 376 (400)
T ss_dssp EECCT
T ss_pred ecCCC
Confidence 99843
No 15
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=94.63 E-value=1.8 Score=46.63 Aligned_cols=67 Identities=10% Similarity=0.110 Sum_probs=35.7
Q ss_pred CceEEEeCCCcEEEecCCCCC----CCCccceeeeccCCCCcEEEEE---c-CCcEEEEEe--CCCEEEEeCCCCCc
Q 009248 295 VNSSCTAGGGQLYMWGKLKNN----GDDWMYPKPLMDLSGWNLRCMD---S-GNMHHFVGA--DSSCISWGHAQYGE 361 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~n~~~----~~~~~~P~~v~~l~~~~i~~i~---~-G~~h~~~lt--~G~vy~wG~n~~Gq 361 (539)
.|++++..+|+||+.|-.... ......-..+..+.......+. . =..|++++. +|+||+.|-+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 567777779999999864311 0111111111111112222222 1 135765544 99999999886653
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.53 E-value=4.4 Score=40.65 Aligned_cols=236 Identities=9% Similarity=0.057 Sum_probs=125.0
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEee
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG 135 (539)
..|..++. .....+.-..||.|+.|-....-. ...+.. ....|..|+......+.-..+|.|+.|-
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~l~~~~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM-----------LNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE-----------EEEECC-CCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE-----------EEEEcC-CCCcEEEEEEcCCEEEEeeCCCcEEEEe
Confidence 36777775 366667777899999997542211 111111 2335888888777777778999999996
Q ss_pred cCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCccccccc
Q 009248 136 WNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYE 215 (539)
Q Consensus 136 ~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 215 (539)
......+ ............|..++....+.+... .+| .|..|-....-.
T Consensus 240 ~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg-~i~vwd~~~~~~--------------------- 288 (435)
T 1p22_A 240 MASPTDI--------TLRRVLVGHRAAVNVVDFDDKYIVSAS-GDR-TIKVWNTSTCEF--------------------- 288 (435)
T ss_dssp CSSSSCC--------EEEEEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETTTCCE---------------------
T ss_pred CCCCCCc--------eeeeEecCCCCcEEEEEeCCCEEEEEe-CCC-eEEEEECCcCcE---------------------
Confidence 4322110 000011111234667776555544444 677 888885432100
Q ss_pred ccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCC
Q 009248 216 AQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295 (539)
Q Consensus 216 ~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~ 295 (539)
...+. .....|..++....+.++-..+|.|..|-.... + .+..+... ...|..++....
T Consensus 289 ----~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~-~-------------~~~~~~~h--~~~v~~~~~~~~ 347 (435)
T 1p22_A 289 ----VRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-A-------------CLRVLEGH--EELVRCIRFDNK 347 (435)
T ss_dssp ----EEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-C-------------EEEEECCC--SSCEEEEECCSS
T ss_pred ----EEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC-C-------------EEEEEeCC--cCcEEEEEecCC
Confidence 00111 112356677776677777788999999965431 1 11111111 123456666556
Q ss_pred ceEEEeCCCcEEEecCCCCC----CCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCC
Q 009248 296 NSSCTAGGGQLYMWGKLKNN----GDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 296 ~s~~lt~~G~vy~wG~n~~~----~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~ 358 (539)
..++-..+|.|.+|-..... .........+.. ....|..++....+.+... ||.|..|-...
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE-HSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC-CSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccC-CCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 66666789999999642211 000001111111 1224666666444444444 89999996544
No 17
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.24 E-value=0.97 Score=49.21 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.1
Q ss_pred CceeEEEec-CCCEEEeecC
Q 009248 119 RSHTVVVTE-DGNSLAFGWN 137 (539)
Q Consensus 119 ~~ht~~Lt~-~G~vy~wG~n 137 (539)
..|++++.. +|+||.+|-.
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~ 460 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGR 460 (695)
T ss_dssp BSCEEEEETTTTEEEEECCB
T ss_pred cceEEEEEccCCEEEEEcCC
Confidence 468888876 8999999853
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.05 E-value=5.5 Score=39.89 Aligned_cols=228 Identities=12% Similarity=0.076 Sum_probs=126.6
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeec
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~ 136 (539)
.|..++.. ..+.+.-..||.|+.|-.... + ....+.. ....|..++......+.-..||.|..|-.
T Consensus 135 ~v~~~~~d--~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTL-E----------CKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEEEEECC--SSEEEEEESSSCEEEEESSSC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEES
T ss_pred cEEEEEEC--CCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEEC
Confidence 46666643 667777788999999964321 1 1111211 23358888876666666688999999965
Q ss_pred CCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccc
Q 009248 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (539)
Q Consensus 137 n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 216 (539)
...-.+ ..+......|..++......+... .+| .|+.|-......
T Consensus 201 ~~~~~~-----------~~~~~h~~~v~~l~~~~~~l~s~s-~dg-~i~vwd~~~~~~---------------------- 245 (435)
T 1p22_A 201 NTGEML-----------NTLIHHCEAVLHLRFNNGMMVTCS-KDR-SIAVWDMASPTD---------------------- 245 (435)
T ss_dssp SSCCEE-----------EEECCCCSCEEEEECCTTEEEEEE-TTS-CEEEEECSSSSC----------------------
T ss_pred CCCcEE-----------EEEcCCCCcEEEEEEcCCEEEEee-CCC-cEEEEeCCCCCC----------------------
Confidence 322110 011112234777777655544444 777 898885432110
Q ss_pred cCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCc
Q 009248 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVN 296 (539)
Q Consensus 217 ~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~ 296 (539)
..+.....-....|..++....+.++-..+|.|..|-.... ..+..+... ...+..++.....
T Consensus 246 -~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~~--~~~v~~~~~~~~~ 308 (435)
T 1p22_A 246 -ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNGH--KRGIACLQYRDRL 308 (435)
T ss_dssp -CEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEECC--SSCEEEEEEETTE
T ss_pred -ceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcCC--CCcEEEEEeCCCE
Confidence 00001111122357777776777777788999999964321 111111111 1234456665666
Q ss_pred eEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeC
Q 009248 297 SSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGH 356 (539)
Q Consensus 297 s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~ 356 (539)
.++-..+|.|.+|-.... .....+. .....|..++....+.++-. ||.|.+|-.
T Consensus 309 l~~g~~dg~i~iwd~~~~-----~~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 309 VVSGSSDNTIRLWDIECG-----ACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEETTSCEEEEETTTC-----CEEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEEEeCCCeEEEEECCCC-----CEEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 677778999999965321 0111111 12235778887545544445 899999964
No 19
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=93.24 E-value=6.6 Score=38.24 Aligned_cols=86 Identities=7% Similarity=0.011 Sum_probs=46.7
Q ss_pred EecCCCCCCeEEEEEeC-CCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEec----cCCCCcEEEEEeC---Cc
Q 009248 49 RLRPLVGVDIRFVAAGC-VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS----ELSKYKIKKAGAG---RS 120 (539)
Q Consensus 49 ~i~~~~~~~i~~v~~gc-G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~----~~~~~~I~~Ia~G---~~ 120 (539)
.+.......|..++... .....+.-..||.|..|-......+..- .......+. ......|..|+.. ..
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY---TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE---EECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE---eccccccccccccccCCCcEEEEEEccCCCc
Confidence 33333445788888764 3456666677999999975533221110 000000000 0123357777764 34
Q ss_pred eeEEEecCCCEEEeecC
Q 009248 121 HTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 121 ht~~Lt~~G~vy~wG~n 137 (539)
..+....+|.|..|-..
T Consensus 114 ~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp CEEEEETTSEEEEEETT
T ss_pred EEEEEeCCCeEEEeeCC
Confidence 55566779999999643
No 20
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.19 E-value=6.1 Score=37.76 Aligned_cols=279 Identities=10% Similarity=-0.012 Sum_probs=120.8
Q ss_pred CCeEEEEEeCC----CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC---ceeEEEecC
Q 009248 56 VDIRFVAAGCV----SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR---SHTVVVTED 128 (539)
Q Consensus 56 ~~i~~v~~gcG----~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~---~ht~~Lt~~ 128 (539)
..|..++.... ....+.-..+|.|+.|-....-. ...+.. ....|..|+... ...+.-..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-----------~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQC-----------IKHYVG-HGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCE-----------EEEEES-CCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceE-----------eeeecC-CCCcEEEEEECCCCCCEEEEEeCC
Confidence 35666665422 12455566789999996432111 111221 233577777643 445555789
Q ss_pred CCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee-EEEEccCCceEEecCCCCccccCCCCC-CCCccc
Q 009248 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLGHGTD-NEYNTK 206 (539)
Q Consensus 129 G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG~n~~GqLG~~~~-~~~~~~ 206 (539)
|.|+.|-......+. ...........|..++...+.. ++....+| .|+.|-....-.+..-.. ..+...
T Consensus 138 g~i~iwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 138 HALRLWNIQTDTLVA--------IFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp SCEEEEETTTTEEEE--------EECSTTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred CeEEEEEeecCeEEE--------EecccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCC
Confidence 999999653211100 0000011223477777654432 33332567 899886543211100000 000000
Q ss_pred CCcccccccccCCc-eeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCC
Q 009248 207 DSSVKLAYEAQPRP-RAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLP 285 (539)
Q Consensus 207 ~~~~~~~~~~~~~p-~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~ 285 (539)
.............| ..........|..|+....+.+....+|.|+.|-.....+.-............+..+.......
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 288 (366)
T 3k26_A 209 KTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI 288 (366)
T ss_dssp GCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS
T ss_pred CCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE
Confidence 00000000000000 00011122345555554667777788999999976543221111111111112222222111000
Q ss_pred CceEEEec--CCceEEEeCCCcEEEecCCCCCCCCccceeeeccCC-CCcEEEEEcCCc--EEEEEe-CCCEEEEeC
Q 009248 286 PEAVISAG--SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLS-GWNLRCMDSGNM--HHFVGA-DSSCISWGH 356 (539)
Q Consensus 286 ~v~~I~~G--~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~-~~~i~~i~~G~~--h~~~lt-~G~vy~wG~ 356 (539)
....++.. ....++-..+|.|++|-........ .....+.... ...|..++.... +.++.. ||.|+.|-.
T Consensus 289 ~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 289 WYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK-AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp SCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG-CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc-ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 01122333 4455556778999999754321100 0111222111 246777776543 233333 899999943
No 21
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=93.18 E-value=7.2 Score=38.50 Aligned_cols=113 Identities=8% Similarity=-0.081 Sum_probs=64.7
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEe
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAF 134 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~w 134 (539)
...|..++......+.++-..+|.|+.|-...... ...+. .....|..++......+....+|.|+.|
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK-----------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeE-----------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEE
Confidence 44677787765556667777899999997543211 11121 1234577888766667777889999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee-EEEEccCCceEEecCCC
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLP 190 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG~n 190 (539)
-...... ...........|..++...+.. ++....+| .|+.|-..
T Consensus 202 d~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~ 247 (401)
T 4aez_A 202 DVRIANH----------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-VVQIWDAR 247 (401)
T ss_dssp ETTSSSC----------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETT
T ss_pred ecccCcc----------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEccCC
Confidence 6542211 0111112233466666654433 33332567 88888544
No 22
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.17 E-value=6.1 Score=37.72 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=86.6
Q ss_pred CeEecCCCCCCeEEEEEeCCC---cEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--e
Q 009248 47 PTRLRPLVGVDIRFVAAGCVS---CHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--H 121 (539)
Q Consensus 47 P~~i~~~~~~~i~~v~~gcG~---~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--h 121 (539)
+..+..-....|..++..... ...+.-..||.|+.|-....++ .....+.. ....|..|+...+ +
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~-h~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQM-HTGPVLDVCWSDDGSK 100 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEEE-CSSCEEEEEECTTSSE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEecc-ccCCEEEEEECcCCCE
Confidence 344333344578888876432 4555556789999997654222 11112221 1234777766533 4
Q ss_pred eEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEe--CCC-eeEEEEccCCceEEecCCCCccccCCC
Q 009248 122 TVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATAC--GAD-FTVWLSSVEGASILNAGLPQYGQLGHG 198 (539)
Q Consensus 122 t~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~--G~~-~s~~lt~~~G~~vy~wG~n~~GqLG~~ 198 (539)
.+....||.|..|-..... ..........|..++. ..+ ..++....+| .|+.|-....-
T Consensus 101 l~s~~~dg~v~iwd~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~----- 162 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQ------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSSN----- 162 (368)
T ss_dssp EEEEETTSEEEEEETTTTE------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCSS-----
T ss_pred EEEEcCCCcEEEEEcCCCC------------ceeeccccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCCc-----
Confidence 5555788999999653211 1112222344777765 333 3344443577 89988643210
Q ss_pred CCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecC
Q 009248 199 TDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFG 256 (539)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n 256 (539)
+....... ..+..+..-....++.+.++.++.|-..
T Consensus 163 ---------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 163 ---------------------PMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp ---------------------CSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred ---------------------EEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 00101111 2455555556677778888999999654
No 23
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=93.03 E-value=0.66 Score=50.07 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.0
Q ss_pred CcEEEEEecCCcEEEEeC
Q 009248 67 SCHCVAVDVEGRCYTWGR 84 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~ 84 (539)
.+|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 458888877999999996
No 24
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.63 E-value=9.1 Score=38.27 Aligned_cols=187 Identities=9% Similarity=0.014 Sum_probs=93.6
Q ss_pred cEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceee---ccCceEEEEeCCCeeEEEEccCCceEEec
Q 009248 111 KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRC---LVSEVTATACGADFTVWLSSVEGASILNA 187 (539)
Q Consensus 111 ~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~---~~~~i~~ia~G~~~s~~lt~~~G~~vy~w 187 (539)
.|..++....+.+.-..+|.|+.|-.... .++.. ....|..++....+.+.-. .+| .|+.|
T Consensus 241 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~-~i~i~ 304 (445)
T 2ovr_B 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETE--------------TCLHTLQGHTNRVYSLQFDGIHVVSGS-LDT-SIRVW 304 (445)
T ss_dssp CEEEEEECSSCEEEEETTSCEEEEEGGGT--------------EEEEEECCCSSCEEEEEECSSEEEEEE-TTS-CEEEE
T ss_pred cEEEEEECCCEEEEEcCCCEEEEEECCCC--------------cEeEEecCCCCceEEEEECCCEEEEEe-CCC-eEEEE
Confidence 45666665555566667777777743211 11111 1233666666444433334 666 77777
Q ss_pred CCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCC
Q 009248 188 GLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK 267 (539)
Q Consensus 188 G~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~ 267 (539)
-......+ ..+. .....+..++......++-..+|.|+.|-.... +
T Consensus 305 d~~~~~~~-------------------------~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~-~------- 350 (445)
T 2ovr_B 305 DVETGNCI-------------------------HTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTG-Q------- 350 (445)
T ss_dssp ETTTCCEE-------------------------EEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTC-C-------
T ss_pred ECCCCCEE-------------------------EEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC-c-------
Confidence 54321000 0011 112245566666666677778999999964321 1
Q ss_pred CccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeec----cCCCCcEEEEEcCCcEE
Q 009248 268 DEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLM----DLSGWNLRCMDSGNMHH 343 (539)
Q Consensus 268 ~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~----~l~~~~i~~i~~G~~h~ 343 (539)
....+.... .....|..++....+.++-..+|.|.+|-.... ... ..+. ......|..++......
T Consensus 351 ---~~~~~~~~~--~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~----~~~-~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 351 ---CLQTLQGPN--KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTG----EFI-RNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp ---EEEEECSTT--SCSSCEEEEEECSSEEEEEETTSEEEEEETTTC----CEE-EEEEECTTGGGTCEEEEEEECSSEE
T ss_pred ---EEEEEccCC--CCCCCEEEEEECCCEEEEEeCCCeEEEEECCCC----cee-eeeeccccCCCCceEEEEEecCCEE
Confidence 111111110 112235566666666677778999999964321 111 1110 11223577776655443
Q ss_pred -EEEe--CCC----EEEEeCC
Q 009248 344 -FVGA--DSS----CISWGHA 357 (539)
Q Consensus 344 -~~lt--~G~----vy~wG~n 357 (539)
++.. ||. |++|=.+
T Consensus 421 ~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECC
T ss_pred EEEEcccCCCCccEEEEEECC
Confidence 3333 665 7776443
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=90.85 E-value=12 Score=36.22 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCC----C---cEEEEEecCCcEEEEeCCCCCc
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCV----S---CHCVAVDVEGRCYTWGRNERGQ 89 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG----~---~h~~~lt~~G~vy~wG~n~~Gq 89 (539)
+.||.|++|-...... .........+.. ....|..++.... . .+.+....+|.|+.|-......
T Consensus 33 ~~dg~i~iw~~~~~~~--------~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~ 103 (397)
T 1sq9_A 33 SGDGYLKVWDNKLLDN--------ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE 103 (397)
T ss_dssp ETTSEEEEEESBCCTT--------CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT
T ss_pred cCCCEEEEEECCCccc--------ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc
Confidence 5788999997542210 001111222222 2335777765532 2 3445556789999996432111
Q ss_pred cCCCCCCCcccceEeccCC----CCcEEEEEeC------Cce-eEEEecCCCEEEeecCC
Q 009248 90 LGHGDKIQRDRPTIVSELS----KYKIKKAGAG------RSH-TVVVTEDGNSLAFGWNK 138 (539)
Q Consensus 90 LG~g~~~~~~~P~~v~~~~----~~~I~~Ia~G------~~h-t~~Lt~~G~vy~wG~n~ 138 (539)
........+.... ...|..++.. ..+ .++...+|.|+.|-...
T Consensus 104 ------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 104 ------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp ------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred ------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 0000022222221 2346666655 334 45557889999996543
No 26
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=89.89 E-value=17 Score=36.23 Aligned_cols=267 Identities=10% Similarity=-0.004 Sum_probs=142.4
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeec
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~ 136 (539)
.+..++.. ....+.-..||.|+.|-....-.+ ..+.. ....|..++......+.-..||.|+.|-.
T Consensus 121 v~~~~~~~--g~~l~sg~~dg~i~vwd~~~~~~~-----------~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~ 186 (445)
T 2ovr_B 121 VITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCL-----------RTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNA 186 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE-----------EECCC-CSSCEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cEEEEEEc--CCEEEEEECCCcEEEEECCCCcEE-----------EEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEEC
Confidence 34556654 566677788999999975422111 11111 12347777766677777788999999964
Q ss_pred CCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccc
Q 009248 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (539)
Q Consensus 137 n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 216 (539)
..... ...+......|..++......+... .+| .|+.|-.....
T Consensus 187 ~~~~~-----------~~~~~~h~~~v~~~~~~~~~l~s~s-~dg-~i~~wd~~~~~----------------------- 230 (445)
T 2ovr_B 187 ETGEC-----------IHTLYGHTSTVRCMHLHEKRVVSGS-RDA-TLRVWDIETGQ----------------------- 230 (445)
T ss_dssp TTTEE-----------EEEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEESSSCC-----------------------
T ss_pred CcCcE-----------EEEECCCCCcEEEEEecCCEEEEEe-CCC-EEEEEECCCCc-----------------------
Confidence 32100 0011112233666666555544444 677 89988543210
Q ss_pred cCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCc
Q 009248 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVN 296 (539)
Q Consensus 217 ~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~ 296 (539)
+..........|..++....+.++-..+|.|+.|-... ...+..+... ...+..+.....+
T Consensus 231 ---~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~--~~~v~~~~~~~~~ 291 (445)
T 2ovr_B 231 ---CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQGH--TNRVYSLQFDGIH 291 (445)
T ss_dssp ---EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECCC--SSCEEEEEECSSE
T ss_pred ---EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecCC--CCceEEEEECCCE
Confidence 00111112235667776666667777899999995432 1112222111 1234566665666
Q ss_pred eEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCC
Q 009248 297 SSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMP 375 (539)
Q Consensus 297 s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P 375 (539)
.++-..+|.|++|-..... ....+. .....+..++......++.. ||.|..|-....-.+
T Consensus 292 l~~~~~d~~i~i~d~~~~~-----~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------- 352 (445)
T 2ovr_B 292 VVSGSLDTSIRVWDVETGN-----CIHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL------------- 352 (445)
T ss_dssp EEEEETTSCEEEEETTTCC-----EEEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE-------------
T ss_pred EEEEeCCCeEEEEECCCCC-----EEEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE-------------
Confidence 6667789999999653211 111111 11224666666555555555 899999965332111
Q ss_pred eeeccC--CCCEEEEEEecCCceEEEEcCCccccccccceeecCC
Q 009248 376 KKVDIL--EGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGK 418 (539)
Q Consensus 376 ~~v~~l--~~~~v~~va~G~~ht~~l~~~g~v~~~~~~~~~~~~~ 418 (539)
..+... ....|..++....+.++-..+|. +.+|...
T Consensus 353 ~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~-------v~iwd~~ 390 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGT-------VKLWDLK 390 (445)
T ss_dssp EEECSTTSCSSCEEEEEECSSEEEEEETTSE-------EEEEETT
T ss_pred EEEccCCCCCCCEEEEEECCCEEEEEeCCCe-------EEEEECC
Confidence 111110 22356677666555555556666 5666644
No 27
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.32 E-value=6.7 Score=42.49 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCCeeEEEccCCcEEEEec
Q 009248 237 GTNHTVAVDSKGYVYTWGF 255 (539)
Q Consensus 237 G~~hs~alt~~G~vy~wG~ 255 (539)
-..|++++..+|+||.+|-
T Consensus 490 R~~h~~~~~~~~~iyv~GG 508 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGG 508 (695)
T ss_dssp CBSCEEEECTTSCEEEECC
T ss_pred cccceEEEEcCCEEEEECC
Confidence 3467777766899999983
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=87.91 E-value=17 Score=33.66 Aligned_cols=230 Identities=8% Similarity=-0.003 Sum_probs=114.6
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEe
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAF 134 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~w 134 (539)
...|..++......+.++-..+|.|+.|-...... ......+. .....|..|+.-..+.+....+|.|+.|
T Consensus 59 ~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~--------~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~ 129 (313)
T 3odt_A 59 QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG--------EDPLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVW 129 (313)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT--------SCC-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEE
T ss_pred CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC--------CCcccchh-hcccCEEEEEecCCEEEEEeCCCCEEEE
Confidence 34677777665566677777788888886432210 00011111 1234577787766777777889999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEe---CCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCccc
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATAC---GADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVK 211 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~---G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~ 211 (539)
-. ++ ....+......+..+.. .....+... .+| .|+.|-....
T Consensus 130 d~---~~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~-~i~i~d~~~~------------------- 175 (313)
T 3odt_A 130 KE---GS----------LVYNLQAHNASVWDAKVVSFSENKFLTAS-ADK-TIKLWQNDKV------------------- 175 (313)
T ss_dssp ET---TE----------EEEEEECCSSCEEEEEEEETTTTEEEEEE-TTS-CEEEEETTEE-------------------
T ss_pred cC---Cc----------EEEecccCCCceeEEEEccCCCCEEEEEE-CCC-CEEEEecCce-------------------
Confidence 41 00 00111111233544443 233333333 677 8888841100
Q ss_pred ccccccCCceeecccCCCeEEEEEeCC-CeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEE
Q 009248 212 LAYEAQPRPRAIAALAGETIVKVACGT-NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVI 290 (539)
Q Consensus 212 ~~~~~~~~p~~i~~~~~~~I~~Ia~G~-~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I 290 (539)
...+.......|..++... ...++...+|.|+.|-....- .+..+... ...+..+
T Consensus 176 --------~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~--------------~~~~~~~~--~~~i~~~ 231 (313)
T 3odt_A 176 --------IKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD--------------VLRTYEGH--ESFVYCI 231 (313)
T ss_dssp --------EEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC--------------EEEEEECC--SSCEEEE
T ss_pred --------EEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh--------------hhhhhhcC--CceEEEE
Confidence 0011111122344444422 235556788899999653211 11111111 1123455
Q ss_pred EecCC-ceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCc-EEEEEe-CCCEEEEeCC
Q 009248 291 SAGSV-NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM-HHFVGA-DSSCISWGHA 357 (539)
Q Consensus 291 ~~G~~-~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~-h~~~lt-~G~vy~wG~n 357 (539)
+.... ..++...+|.|++|-.... .+..........|..++.-.. ..++.. ||.|+.|-..
T Consensus 232 ~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 232 KLLPNGDIVSCGEDRTVRIWSKENG------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EECTTSCEEEEETTSEEEEECTTTC------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESC
T ss_pred EEecCCCEEEEecCCEEEEEECCCC------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCC
Confidence 44332 4556677899999964321 111111222335777766444 333334 8999999654
No 29
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.55 E-value=8.1 Score=37.51 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=12.4
Q ss_pred cEEEEEeCCCEEEEeC
Q 009248 341 MHHFVGADSSCISWGH 356 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~ 356 (539)
.|++++.+++||++|-
T Consensus 309 ~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 309 YGVSLPWNNSLLIIGG 324 (357)
T ss_dssp SSEEEEETTEEEEEEE
T ss_pred cceeEEeCCEEEEEee
Confidence 3666666999999985
No 30
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=86.99 E-value=49 Score=38.00 Aligned_cols=109 Identities=9% Similarity=-0.002 Sum_probs=53.5
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~vy~w 134 (539)
.|..++......+.++-+.+|.|+.|-....-.+ ..+.. ....|..|+.. ..+.+....||.|+.|
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~-----------~~~~~-h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF-----------SSGVG-HKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE-----------EECCC-CSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee-----------eeccc-CCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 4555555444455555666677777754321110 01111 11224444433 3344445678999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCC
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n 190 (539)
-...... .........|..++......++....+| .|+.|-..
T Consensus 1031 d~~~~~~------------~~~~~~~~~v~~~~~~~~~~l~~~~~dg-~v~vwd~~ 1073 (1249)
T 3sfz_A 1031 NWQTGDY------------VFLQAHQETVKDFRLLQDSRLLSWSFDG-TVKVWNVI 1073 (1249)
T ss_dssp ETTTTEE------------ECCBCCSSCEEEEEECSSSEEEEEESSS-EEEEEETT
T ss_pred ECCCCce------------EEEecCCCcEEEEEEcCCCcEEEEECCC-cEEEEECC
Confidence 6532111 1111122346666665555555554677 89888643
No 31
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=86.57 E-value=24 Score=34.15 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCC
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRN 85 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n 85 (539)
..|..++......+.++...+|.|+.|-..
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 467777765445567777788999999764
No 32
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=86.43 E-value=0.13 Score=42.16 Aligned_cols=7 Identities=86% Similarity=1.702 Sum_probs=0.0
Q ss_pred CCCCCCC
Q 009248 510 GRGRGRP 516 (539)
Q Consensus 510 ~~~~~~~ 516 (539)
||+||+|
T Consensus 111 gr~~~~~ 117 (119)
T 1b34_A 111 GRGRGGP 117 (119)
T ss_dssp -------
T ss_pred CCCCCCC
Confidence 3344444
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=85.94 E-value=22 Score=33.12 Aligned_cols=233 Identities=12% Similarity=0.055 Sum_probs=106.8
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCce-eEEEecCCCEEEeecCCCCCCCCC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSH-TVVVTEDGNSLAFGWNKHGQLGSG 145 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~h-t~~Lt~~G~vy~wG~n~~gqlG~~ 145 (539)
.-.+++++.||++++++......+..... ....+..... ....|..++...+. .++...+|.|..|-........
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~-- 86 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIP-RHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-- 86 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS--
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccC-Cccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee--
Confidence 55678899999999988654433222111 1111111111 12345555544332 3333448888888654321110
Q ss_pred CCCCccccccee--eccCceEEEEeCCCee-EEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCcee
Q 009248 146 SIRNEIEPSPVR--CLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRA 222 (539)
Q Consensus 146 ~~~~~~~~~~~~--~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~ 222 (539)
. ..... .....|..++...+.. ++....+| .|+.|-..... .....
T Consensus 87 ----~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~------------------------~~~~~ 135 (337)
T 1gxr_A 87 ----P--VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAPT------------------------PRIKA 135 (337)
T ss_dssp ----C--SEEEECSCTTSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--------------------------EEEE
T ss_pred ----e--eecccccCCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCC------------------------cceee
Confidence 0 00011 1223366666554433 33332566 88888543210 00001
Q ss_pred ecccCCCeEEEEEeC--CCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecC--CceE
Q 009248 223 IAALAGETIVKVACG--TNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGS--VNSS 298 (539)
Q Consensus 223 i~~~~~~~I~~Ia~G--~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~--~~s~ 298 (539)
........|..++.. ..+.++...+|.|+.|-.... ..+..+... ...+..++... ...+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~--~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGH--TDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecc--cCceEEEEECCCCCEEE
Confidence 111112345555553 334455567889999964321 111111111 11234444432 3444
Q ss_pred EEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCC--cEEEEEe-CCCEEEEeCC
Q 009248 299 CTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGN--MHHFVGA-DSSCISWGHA 357 (539)
Q Consensus 299 ~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~--~h~~~lt-~G~vy~wG~n 357 (539)
+...+|.|++|-.... .+...... ...+..++... ...++.. ++.|+.|-..
T Consensus 200 ~~~~dg~i~~~d~~~~------~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~ 254 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREG------RQLQQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEETTSEEEEEETTTT------EEEEEEEC-SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEecCCcEEEEECCCC------ceEeeecC-CCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 5567899999964321 11111111 22455555432 2333334 7889988544
No 34
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.36 E-value=14 Score=34.66 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=11.5
Q ss_pred ceeEEEecCCCEEEeec
Q 009248 120 SHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 120 ~ht~~Lt~~G~vy~wG~ 136 (539)
.|++++. +++||.+|-
T Consensus 152 ~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 152 GAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred cceEEEE-CCEEEEECC
Confidence 4555554 789999985
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=85.31 E-value=24 Score=32.90 Aligned_cols=269 Identities=10% Similarity=0.003 Sum_probs=126.3
Q ss_pred CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (539)
Q Consensus 16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~ 95 (539)
.+.||++++++......+.... .....+..... ....|..++......+ ++...+|.|..|-.......
T Consensus 17 ~s~dg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-h~~~v~~~~~~~~~~~-l~~~~dg~i~iw~~~~~~~~----- 85 (337)
T 1gxr_A 17 VTADGQMQPVPFPPDALIGPGI----PRHARQINTLN-HGEVVCAVTISNPTRH-VYTGGKGCVKVWDISHPGNK----- 85 (337)
T ss_dssp ECSSSCEEECCCCTTSSSSTTC----CSEEEEEEEEC-CSSCCCEEEECSSSSE-EEEECBSEEEEEETTSTTCC-----
T ss_pred ECCCCCEEEeecCCCcEecccc----CCccccceecc-CCCceEEEEEecCCcE-EEEcCCCeEEEEECCCCCce-----
Confidence 4789999998876543333221 11122222221 2335666766543334 44444899999975432211
Q ss_pred CCcccceEecc-CCCCcEEEEEeCCc--eeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCe
Q 009248 96 IQRDRPTIVSE-LSKYKIKKAGAGRS--HTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF 172 (539)
Q Consensus 96 ~~~~~P~~v~~-~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~ 172 (539)
.....+.. .....|..++...+ ..++...+|.|+.|-..... .............|..++...+.
T Consensus 86 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~ 153 (337)
T 1gxr_A 86 ---SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT---------PRIKAELTSSAPACYALAISPDS 153 (337)
T ss_dssp ---SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEECSSSCEEEEEECTTS
T ss_pred ---eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC---------cceeeecccCCCceEEEEECCCC
Confidence 00111110 12334666666543 34444678999999543210 00001111122336666654332
Q ss_pred -eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCC--CeeEEEccCCc
Q 009248 173 -TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGY 249 (539)
Q Consensus 173 -s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~ 249 (539)
.++....+| .|+.|-...... ...+. .....|..++... .+.++...+|.
T Consensus 154 ~~l~~~~~dg-~v~~~d~~~~~~-------------------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 206 (337)
T 1gxr_A 154 KVCFSCCSDG-NIAVWDLHNQTL-------------------------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp SEEEEEETTS-CEEEEETTTTEE-------------------------EEEEC-CCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CEEEEEeCCC-cEEEEeCCCCce-------------------------eeeee-cccCceEEEEECCCCCEEEEEecCCc
Confidence 333332566 888885432100 00111 1123466666543 34455567899
Q ss_pred EEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEec--CCceEEEeCCCcEEEecCCCCCCCCccceeeecc
Q 009248 250 VYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAG--SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMD 327 (539)
Q Consensus 250 vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G--~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~ 327 (539)
|+.|-.... ..+..+.. ...+..++.. ....++-..+|.|++|-..... ...+.
T Consensus 207 i~~~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------~~~~~- 262 (337)
T 1gxr_A 207 VRSWDLREG--------------RQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLH- 262 (337)
T ss_dssp EEEEETTTT--------------EEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEEC-
T ss_pred EEEEECCCC--------------ceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------eEEEc-
Confidence 999964321 11111110 1123344332 2344445668888888653221 11221
Q ss_pred CCCCcEEEEEcCCc--EEEEEe-CCCEEEEeCCC
Q 009248 328 LSGWNLRCMDSGNM--HHFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 328 l~~~~i~~i~~G~~--h~~~lt-~G~vy~wG~n~ 358 (539)
.....|..++.... ..++.. +|.|+.|-...
T Consensus 263 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 11235767765532 333334 88999996543
No 36
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=84.76 E-value=18 Score=34.09 Aligned_cols=18 Identities=6% Similarity=-0.171 Sum_probs=13.5
Q ss_pred CcEEEEEeCCCEEEEeCC
Q 009248 340 NMHHFVGADSSCISWGHA 357 (539)
Q Consensus 340 ~~h~~~lt~G~vy~wG~n 357 (539)
..|++++.+++||++|-.
T Consensus 239 ~~~~~~~~~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEETTEEEEEECB
T ss_pred cceeEEEECCEEEEEeCc
Confidence 356777679999999853
No 37
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=83.38 E-value=17 Score=34.02 Aligned_cols=59 Identities=3% Similarity=-0.038 Sum_probs=29.1
Q ss_pred CceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEE---cC-CcEEEEEeCCCEEEEeC
Q 009248 295 VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMD---SG-NMHHFVGADSSCISWGH 356 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~---~G-~~h~~~lt~G~vy~wG~ 356 (539)
.|++++ .++.||++|-...... ..-..+..+.......+. .. ..|++++.+++||++|-
T Consensus 199 ~~~~~~-~~~~i~v~GG~~~~~~--~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 261 (301)
T 2vpj_A 199 GAGVAL-LNDHIYVVGGFDGTAH--LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG 261 (301)
T ss_dssp SCEEEE-ETTEEEEECCBCSSSB--CCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred cceEEE-ECCEEEEEeCCCCCcc--cceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcC
Confidence 344444 3789999986432110 001111112222223322 11 35666666999999985
No 38
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=83.36 E-value=38 Score=33.58 Aligned_cols=162 Identities=8% Similarity=-0.014 Sum_probs=80.8
Q ss_pred CeEEEEEeCCCc-EEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC---CceeEEEecCCCEE
Q 009248 57 DIRFVAAGCVSC-HCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGNSL 132 (539)
Q Consensus 57 ~i~~v~~gcG~~-h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G---~~ht~~Lt~~G~vy 132 (539)
.|..++...... +.+.-..+|.|+.|-.+...... ....|..........|..|+.. ....+....+|.|+
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 455555443223 55556678999999876432210 0011111111123347777764 33444556899999
Q ss_pred EeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCe--eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcc
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF--TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSV 210 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~--s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~ 210 (539)
.|-....... .....+......|..|+..... .++....+| .|..|-....++
T Consensus 258 i~d~~~~~~~--------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~---------------- 312 (430)
T 2xyi_A 258 IWDTRNNNTS--------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKL---------------- 312 (430)
T ss_dssp EEETTCSCSS--------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTS----------------
T ss_pred EEECCCCCCC--------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCC----------------
Confidence 9976432110 0000111122346667665432 344443567 888886543211
Q ss_pred cccccccCCceeecccCCCeEEEEEeCCC---eeEEEccCCcEEEEecCC
Q 009248 211 KLAYEAQPRPRAIAALAGETIVKVACGTN---HTVAVDSKGYVYTWGFGG 257 (539)
Q Consensus 211 ~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~---hs~alt~~G~vy~wG~n~ 257 (539)
|..........|..|+.... ..+.-..+|.|..|-...
T Consensus 313 ---------~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 313 ---------KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ---------CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ---------CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 11111111235666666432 344455788999997654
No 39
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=82.87 E-value=35 Score=32.82 Aligned_cols=254 Identities=9% Similarity=0.029 Sum_probs=116.2
Q ss_pred CCCeEEEEEeC-CCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc-----eeEEEecC
Q 009248 55 GVDIRFVAAGC-VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS-----HTVVVTED 128 (539)
Q Consensus 55 ~~~i~~v~~gc-G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~-----ht~~Lt~~ 128 (539)
...|..++... +....+....+|.|+.|-....-. ...+.. ...+..+..... ..++-..+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT-----------ADVFNF--EETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE-----------EEEEEC--SSCEEEEEECSSCSSCCEEEEEESS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc-----------ceeccC--CCceeeeEeecCCCCCcEEEEEcCC
Confidence 34677777654 455666677799999996542110 111111 223444444332 45555788
Q ss_pred CCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee--EEEEccCCceEEecCCCCccccCCCCCCCCccc
Q 009248 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT--VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTK 206 (539)
Q Consensus 129 G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s--~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~ 206 (539)
|.|+.|-......+ ..+......|..++...... ++....+| .|+.|-.......-.......
T Consensus 166 ~~v~~~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~--- 230 (408)
T 4a11_B 166 PKVQLCDLKSGSCS-----------HILQGHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRASGCLITLDQHN--- 230 (408)
T ss_dssp SSEEEEESSSSCCC-----------EEECCCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSSCCSEECCTTT---
T ss_pred CeEEEEeCCCccee-----------eeecCCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCCcccccccccc---
Confidence 99999965322111 11111223466666654432 43333677 888886543211000000000
Q ss_pred CCcccccccccCCceeecccCCCeEEEEEeCCC--eeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCC
Q 009248 207 DSSVKLAYEAQPRPRAIAALAGETIVKVACGTN--HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVL 284 (539)
Q Consensus 207 ~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~--hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~ 284 (539)
. .....+..........|..++.... +.++...+|.|+.|-....-.+-...... .. ... .
T Consensus 231 -~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~---~ 293 (408)
T 4a11_B 231 -G------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV------CN-NSK---K 293 (408)
T ss_dssp -T------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC------CC-CCS---S
T ss_pred -c------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc------cc-ccc---c
Confidence 0 0000000000112235777766443 55556789999999755422111000000 00 000 0
Q ss_pred CCceEEE-ecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCc--EEEEEe-CCCEEEEeCCCC
Q 009248 285 PPEAVIS-AGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM--HHFVGA-DSSCISWGHAQY 359 (539)
Q Consensus 285 ~~v~~I~-~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~--h~~~lt-~G~vy~wG~n~~ 359 (539)
.....+. ......++...++.|++|-.... .....+. .....|..++.... +.+... ||.|++|-....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-----~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-----EQITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTC-----CEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCC-----cceeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 0001222 22344555667889999965321 0111111 11225666665433 333334 899999965543
No 40
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=82.31 E-value=33 Score=32.16 Aligned_cols=163 Identities=9% Similarity=-0.047 Sum_probs=82.3
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--Cc-eeEEEecCCCEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RS-HTVVVTEDGNSL 132 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~-ht~~Lt~~G~vy 132 (539)
..|..++........++-..+|.|+.|-..... ....+..+.. ....|..|+.. .. +.++-..+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 467777765434556666778999999753221 0001111111 12346655543 34 556667889999
Q ss_pred EeecCCCCCCCCCCCCCcccccceee--ccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcc
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRC--LVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSV 210 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~--~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~ 210 (539)
.|-....+++ ..+.. ....|..++......++....++ .|+.|-...+..- . .
T Consensus 83 ~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-~i~iwd~~~~~~~---~---~------- 137 (342)
T 1yfq_A 83 KVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGDG---V---I------- 137 (342)
T ss_dssp EECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTTB---C---E-------
T ss_pred EEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCC-eEEEEcccccccc---c---c-------
Confidence 9954111111 11111 22336665544333333333677 8998853321000 0 0
Q ss_pred cccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecCC
Q 009248 211 KLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGG 257 (539)
Q Consensus 211 ~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~ 257 (539)
.....+..... ....|..++......++.+.+|.|+.|-...
T Consensus 138 ----~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 138 ----AVKNLNSNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp ----EEEESCSSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred ----cccCCeeeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 00000000001 1235777777777777778899999997643
No 41
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=82.30 E-value=30 Score=31.77 Aligned_cols=268 Identities=9% Similarity=0.013 Sum_probs=128.7
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~vy~ 133 (539)
..|..++.. .....+.-..||.|+.|-.... .....+... ...|..|+.. ..+.++-..+|.|..
T Consensus 19 ~~v~~~~~~-~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 19 QDVRDVVAV-DDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp SCEEEEEEE-ETTEEEEEETTSEEEEEEESSS-----------EEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCcEEEEec-CCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEE
Confidence 367777763 2456667778999999974321 111112111 2235555443 344555577888888
Q ss_pred eecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCccccc
Q 009248 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLA 213 (539)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 213 (539)
|-....... .....+......|..++......+... .+| .|+.|-.. +
T Consensus 86 ~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~-~i~~~d~~---~------------------- 133 (313)
T 3odt_A 86 VPLFATSGE--------DPLYTLIGHQGNVCSLSFQDGVVISGS-WDK-TAKVWKEG---S------------------- 133 (313)
T ss_dssp EETTCCTTS--------CC-CEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETT---E-------------------
T ss_pred EEeeecCCC--------CcccchhhcccCEEEEEecCCEEEEEe-CCC-CEEEEcCC---c-------------------
Confidence 854322110 000111112234777777444444444 677 89988411 0
Q ss_pred ccccCCceeecccCCCeEEEEEe---CCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEE
Q 009248 214 YEAQPRPRAIAALAGETIVKVAC---GTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVI 290 (539)
Q Consensus 214 ~~~~~~p~~i~~~~~~~I~~Ia~---G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I 290 (539)
+..........|..++. .....++...+|.|+.|-.. ..+..+... ....+..+
T Consensus 134 ------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~----------------~~~~~~~~~-~~~~i~~~ 190 (313)
T 3odt_A 134 ------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND----------------KVIKTFSGI-HNDVVRHL 190 (313)
T ss_dssp ------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT----------------EEEEEECSS-CSSCEEEE
T ss_pred ------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC----------------ceEEEEecc-CcccEEEE
Confidence 00011111223444443 45566667788999999411 111111110 01122333
Q ss_pred Eec-CCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCc-EEEEEe-CCCEEEEeCCCCCccCCCCC
Q 009248 291 SAG-SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM-HHFVGA-DSSCISWGHAQYGELGYGPY 367 (539)
Q Consensus 291 ~~G-~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~-h~~~lt-~G~vy~wG~n~~GqLG~g~~ 367 (539)
+.. ....++...+|.|++|-.... .+..........|..++.... ..++.. ||.|+.|-....
T Consensus 191 ~~~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~-------- 256 (313)
T 3odt_A 191 AVVDDGHFISCSNDGLIKLVDMHTG------DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG-------- 256 (313)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC--------
T ss_pred EEcCCCeEEEccCCCeEEEEECCch------hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC--------
Confidence 322 222556678899999965321 111111112235777766544 333334 899999953321
Q ss_pred CCCCcCCCeeeccCCCCEEEEEEecCCceEE-EEcCCccccccccceeecCC
Q 009248 368 GQKSSAMPKKVDILEGMHVISVACGYGHSLV-IVDRTNVGERLDQLDVYDGK 418 (539)
Q Consensus 368 ~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~-l~~~g~v~~~~~~~~~~~~~ 418 (539)
.+...-......|..++.-.+..++ ...+|. +.+|..+
T Consensus 257 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~-------i~iw~~~ 295 (313)
T 3odt_A 257 ------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNL-------VRIFSQE 295 (313)
T ss_dssp ------CEEEEEECSSSCEEEEEECTTSCEEEEETTSC-------EEEEESC
T ss_pred ------ceeEEEeccCceEEEEEEccCCCEEEEeCCCc-------EEEEeCC
Confidence 1111112223357777665554333 335554 6777754
No 42
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=81.87 E-value=34 Score=31.99 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=20.4
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCC
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRN 85 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n 85 (539)
..|..++......+.+.-..||.|+.|-..
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~ 116 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLT 116 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeec
Confidence 367777766545566666778888888754
No 43
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=81.11 E-value=37 Score=31.98 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecC-----
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTED----- 128 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~----- 128 (539)
..|..++......+.+....||.|+.|-....-.+ ..+. ....|..++.... +.++...+
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV-----------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-----------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----------EEee--cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 46777776544556677778999999965322111 1111 1223555554433 33444555
Q ss_pred CCEEEeecC
Q 009248 129 GNSLAFGWN 137 (539)
Q Consensus 129 G~vy~wG~n 137 (539)
|.|+.|-..
T Consensus 142 g~i~~~d~~ 150 (369)
T 3zwl_B 142 GSINIYEIE 150 (369)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEec
Confidence 788888654
No 44
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=80.82 E-value=67 Score=34.73 Aligned_cols=111 Identities=7% Similarity=0.013 Sum_probs=56.6
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC----CceeEEEecCCCEE
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG----RSHTVVVTEDGNSL 132 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G----~~ht~~Lt~~G~vy 132 (539)
.|..++........+.-..||.|.+|-.... .......+.. ....|..|+.. ....+....||.|+
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTG-HEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECC-CSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccC-CcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4555554322334445557899999963210 0001111111 12357777764 34555667899999
Q ss_pred EeecCCCCCCCCCCCCCcccccceee---ccCceEEEEeCCC---eeEEEEccCCceEEecCCC
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRC---LVSEVTATACGAD---FTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~---~~~~i~~ia~G~~---~s~~lt~~~G~~vy~wG~n 190 (539)
.|-.... ....+.. ....|..++.... ..++....+| .|+.|-..
T Consensus 81 vwd~~~~------------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~ 131 (753)
T 3jro_A 81 IWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFK 131 (753)
T ss_dssp EEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECC
T ss_pred EEECCCC------------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-cEEEEEee
Confidence 9964321 0011111 1234777776543 2333333677 88888644
No 45
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=80.56 E-value=68 Score=34.66 Aligned_cols=72 Identities=11% Similarity=0.142 Sum_probs=42.4
Q ss_pred CCeEEEEEeCC--CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC----ceeEEEecCC
Q 009248 56 VDIRFVAAGCV--SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR----SHTVVVTEDG 129 (539)
Q Consensus 56 ~~i~~v~~gcG--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~----~ht~~Lt~~G 129 (539)
..|..++.... ....+....||.|+.|-.... ...+..........|..|+... ...+..+.+|
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 36777776432 345666677999999974321 0011111111234577777664 3556667889
Q ss_pred CEEEeecC
Q 009248 130 NSLAFGWN 137 (539)
Q Consensus 130 ~vy~wG~n 137 (539)
.|+.|-..
T Consensus 124 ~I~vwdl~ 131 (753)
T 3jro_A 124 KVSVVEFK 131 (753)
T ss_dssp EEEEEECC
T ss_pred cEEEEEee
Confidence 99999654
No 46
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=80.16 E-value=89 Score=35.76 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=37.3
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC-ceeEEEecCCCEEEee
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR-SHTVVVTEDGNSLAFG 135 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~-~ht~~Lt~~G~vy~wG 135 (539)
.|..++......+.+....||.|+.|-....-.+ .+.. ....|..++... ...++...+|.|+.|-
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~------------~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV------------FLQA-HQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEEE------------CCBC-CSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCceE------------EEec-CCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 4555555433445555667899999975432111 1111 122355555443 3445557889999996
Q ss_pred cC
Q 009248 136 WN 137 (539)
Q Consensus 136 ~n 137 (539)
..
T Consensus 1072 ~~ 1073 (1249)
T 3sfz_A 1072 VI 1073 (1249)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 47
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=80.14 E-value=38 Score=31.48 Aligned_cols=29 Identities=17% Similarity=0.058 Sum_probs=17.9
Q ss_pred CCCcEEEEEeC-CceeEEEecCCC-EEEeec
Q 009248 108 SKYKIKKAGAG-RSHTVVVTEDGN-SLAFGW 136 (539)
Q Consensus 108 ~~~~I~~Ia~G-~~ht~~Lt~~G~-vy~wG~ 136 (539)
.+-++.-..++ ....++++.+|+ ||.|+.
T Consensus 86 ~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~ 116 (276)
T 3no2_A 86 PDGNALVAWCGHPSTILEVNMKGEVLSKTEF 116 (276)
T ss_dssp TTSCEEEEEESTTEEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEecCCCCEEEEEeCCCCEEEEEec
Confidence 34455555566 556666777887 466654
No 48
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.81 E-value=14 Score=35.03 Aligned_cols=16 Identities=6% Similarity=-0.087 Sum_probs=12.8
Q ss_pred cEEEEEeCCCEEEEeC
Q 009248 341 MHHFVGADSSCISWGH 356 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~ 356 (539)
.|++++.+++||++|-
T Consensus 255 ~~~~~~~~~~i~v~GG 270 (308)
T 1zgk_A 255 ALGITVHQGRIYVLGG 270 (308)
T ss_dssp SCEEEEETTEEEEECC
T ss_pred ceEEEEECCEEEEEcC
Confidence 5677777999999985
No 49
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=79.19 E-value=14 Score=34.84 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=11.8
Q ss_pred cEEEEEecCCcEEEEeCC
Q 009248 68 CHCVAVDVEGRCYTWGRN 85 (539)
Q Consensus 68 ~h~~~lt~~G~vy~wG~n 85 (539)
.|++++. +++||++|-.
T Consensus 94 ~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEECCC
Confidence 4555544 7899999953
No 50
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=79.12 E-value=44 Score=31.64 Aligned_cols=238 Identities=9% Similarity=0.076 Sum_probs=115.1
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccC--CCCcEEEEEeC----CceeEEEecCCC
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSEL--SKYKIKKAGAG----RSHTVVVTEDGN 130 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~--~~~~I~~Ia~G----~~ht~~Lt~~G~ 130 (539)
.|..++........+.-..||.|+.|=.... ....+..+ ....|..|+.. ....+....||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 5667766543445555557888999864310 11111111 12357777764 345555678899
Q ss_pred EEEeecCCCCCCCCCCCCCcccccceee---ccCceEEEEeCCC---eeEEEEccCCceEEecCCCCccccCCCCCCCCc
Q 009248 131 SLAFGWNKHGQLGSGSIRNEIEPSPVRC---LVSEVTATACGAD---FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYN 204 (539)
Q Consensus 131 vy~wG~n~~gqlG~~~~~~~~~~~~~~~---~~~~i~~ia~G~~---~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~ 204 (539)
|..|-.... ....+.. ....|..++.... ..++....+| .|..|-......
T Consensus 81 v~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~---------- 137 (379)
T 3jrp_A 81 VLIWKEENG------------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------- 137 (379)
T ss_dssp EEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSC----------
T ss_pred EEEEEcCCC------------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCc----------
Confidence 999954321 0011111 1234777766544 2333333677 888886443210
Q ss_pred ccCCcccccccccCCceeecccCCCeEEEEEeC---------------CCeeEEEccCCcEEEEecCCCCCCCCCCCCCc
Q 009248 205 TKDSSVKLAYEAQPRPRAIAALAGETIVKVACG---------------TNHTVAVDSKGYVYTWGFGGYGRLGHREQKDE 269 (539)
Q Consensus 205 ~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G---------------~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~ 269 (539)
..+..+. .....|..++.. ..+.++...+|.|+.|-.....+
T Consensus 138 -------------~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------- 194 (379)
T 3jrp_A 138 -------------TSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--------- 194 (379)
T ss_dssp -------------CCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT---------
T ss_pred -------------eeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc---------
Confidence 0011111 112245555543 34455567789999995432110
Q ss_pred cccEEecccccCCCCCCceEEEecC-----CceEEEeCCCcEEEecCCCCCCCCccceeeeccC--CCCcEEEEEcCCcE
Q 009248 270 WVPRRVDVFQRNNVLPPEAVISAGS-----VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDL--SGWNLRCMDSGNMH 342 (539)
Q Consensus 270 ~~p~~v~~~~~~~~~~~v~~I~~G~-----~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l--~~~~i~~i~~G~~h 342 (539)
....+..+... ...|..++... ...+....+|.|++|-....... ....+... ....|..++.....
T Consensus 195 -~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~g 268 (379)
T 3jrp_A 195 -TYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---WKKTLLKEEKFPDVLWRASWSLSG 268 (379)
T ss_dssp -EEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC---CEEEESSSSCCSSCEEEEEECSSS
T ss_pred -ceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc---ceeeeeccccCCCcEEEEEEcCCC
Confidence 11111111111 11344555443 34455567899999965332110 01111111 22346666654332
Q ss_pred -EEE-Ee-CCCEEEEeCCC
Q 009248 343 -HFV-GA-DSSCISWGHAQ 358 (539)
Q Consensus 343 -~~~-lt-~G~vy~wG~n~ 358 (539)
.++ .. ||.|++|=.+.
T Consensus 269 ~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 269 NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp CCEEEEESSSSEEEEEEEE
T ss_pred CEEEEecCCCcEEEEeCCC
Confidence 233 33 89999996543
No 51
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=78.77 E-value=42 Score=31.18 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=37.5
Q ss_pred EEEecCC-ceEEEeCC-Cc-EEEecCCCCCCCCccceeeeccCCCCcEEEEEc-C---------CcEEEEEe-CCCEEEE
Q 009248 289 VISAGSV-NSSCTAGG-GQ-LYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS-G---------NMHHFVGA-DSSCISW 354 (539)
Q Consensus 289 ~I~~G~~-~s~~lt~~-G~-vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~-G---------~~h~~~lt-~G~vy~w 354 (539)
.|++... ..++++.+ |+ +|.++.+.........|.-+..+.+-++.-... | ..+.+.++ +|++ +|
T Consensus 179 ~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W 257 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VW 257 (276)
T ss_dssp EEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EE
T ss_pred EEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EE
Confidence 3444444 45667666 66 566664332222233455555455444432221 2 23466676 7765 66
Q ss_pred eCCCCCccCC
Q 009248 355 GHAQYGELGY 364 (539)
Q Consensus 355 G~n~~GqLG~ 364 (539)
-.+....+|.
T Consensus 258 ~~~~~~~~~~ 267 (276)
T 3no2_A 258 QLNDKVKFGM 267 (276)
T ss_dssp EECCTTTSCC
T ss_pred EecCcccccc
Confidence 6666555543
No 52
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=78.71 E-value=12 Score=35.34 Aligned_cols=17 Identities=6% Similarity=-0.078 Sum_probs=13.1
Q ss_pred cEEEEEeCCCEEEEeCC
Q 009248 341 MHHFVGADSSCISWGHA 357 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n 357 (539)
.|++++.+++||++|-.
T Consensus 244 ~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 244 NAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred cCeEEEECCEEEEECCc
Confidence 56666669999999854
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=76.23 E-value=61 Score=31.76 Aligned_cols=69 Identities=7% Similarity=-0.077 Sum_probs=41.2
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEee
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG 135 (539)
..|..|+......+.+.-..||.|..|-....-. ...+.. ....|..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------LRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------EEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 3577887765556666677899999997542211 111111 1234666666555555556778888774
Q ss_pred c
Q 009248 136 W 136 (539)
Q Consensus 136 ~ 136 (539)
.
T Consensus 216 ~ 216 (420)
T 4gga_A 216 V 216 (420)
T ss_dssp T
T ss_pred e
Confidence 3
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=75.92 E-value=53 Score=30.86 Aligned_cols=157 Identities=6% Similarity=-0.075 Sum_probs=80.8
Q ss_pred CCCeEEEEEeC----CCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEecc-CCCCcEEEEEeCCc------eeE
Q 009248 55 GVDIRFVAAGC----VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE-LSKYKIKKAGAGRS------HTV 123 (539)
Q Consensus 55 ~~~i~~v~~gc----G~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Ia~G~~------ht~ 123 (539)
...|..++... +....++-..++.|..|-......+ ........ .....|..++.... ..+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 34777887653 4556777778889999975432211 00011111 01234666655433 445
Q ss_pred EEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCC-C-eeEEEEccCCceEEecCCCCccccCCCCCC
Q 009248 124 VVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA-D-FTVWLSSVEGASILNAGLPQYGQLGHGTDN 201 (539)
Q Consensus 124 ~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~-~-~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~ 201 (539)
.-..+|.|+.|-...... ...+......|..++... + ..++....+| .|+.|-......+
T Consensus 90 ~~~~dg~i~v~d~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~------ 151 (366)
T 3k26_A 90 VAGSRGIIRIINPITMQC-----------IKHYVGHGNAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTDTLV------ 151 (366)
T ss_dssp EEETTCEEEEECTTTCCE-----------EEEEESCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTTTEEE------
T ss_pred EecCCCEEEEEEchhceE-----------eeeecCCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecCeEE------
Confidence 557889999995432100 011111233477777654 2 3333333577 8998854321100
Q ss_pred CCcccCCcccccccccCCceeec--ccCCCeEEEEEeCC--CeeEEEccCCcEEEEecC
Q 009248 202 EYNTKDSSVKLAYEAQPRPRAIA--ALAGETIVKVACGT--NHTVAVDSKGYVYTWGFG 256 (539)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~p~~i~--~~~~~~I~~Ia~G~--~hs~alt~~G~vy~wG~n 256 (539)
..+. ......|..++... .+.+....+|.|+.|-..
T Consensus 152 -------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 152 -------------------AIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp -------------------EEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred -------------------EEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 0110 01223566666543 344555678999999654
No 55
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=75.78 E-value=13 Score=35.16 Aligned_cols=17 Identities=35% Similarity=0.305 Sum_probs=12.1
Q ss_pred CceeEEEecCCCEEEeec
Q 009248 119 RSHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 119 ~~ht~~Lt~~G~vy~wG~ 136 (539)
..|++++. +++||.+|-
T Consensus 113 ~~~~~~~~-~~~iyv~GG 129 (308)
T 1zgk_A 113 NRIGVGVI-DGHIYAVGG 129 (308)
T ss_dssp BTCEEEEE-TTEEEEECC
T ss_pred cccEEEEE-CCEEEEEcC
Confidence 34666654 789999985
No 56
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=71.84 E-value=68 Score=30.25 Aligned_cols=72 Identities=10% Similarity=0.113 Sum_probs=41.3
Q ss_pred CCeEEEEEeCC--CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc----eeEEEecCC
Q 009248 56 VDIRFVAAGCV--SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS----HTVVVTEDG 129 (539)
Q Consensus 56 ~~i~~v~~gcG--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~----ht~~Lt~~G 129 (539)
..|..++.... ....+....||.|+.|-..... ..+..........|..|+.... ..++...+|
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 36777775322 3456666778999999643210 0111111112345777776643 455667899
Q ss_pred CEEEeecC
Q 009248 130 NSLAFGWN 137 (539)
Q Consensus 130 ~vy~wG~n 137 (539)
.|..|-..
T Consensus 126 ~i~v~d~~ 133 (379)
T 3jrp_A 126 KVSVVEFK 133 (379)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 99999654
No 57
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.69 E-value=74 Score=30.63 Aligned_cols=124 Identities=12% Similarity=0.025 Sum_probs=58.6
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC---CceeEEEecCCCEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGNSL 132 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G---~~ht~~Lt~~G~vy 132 (539)
..|..++........+.-..+|.|+.|-...... + ......+.. ....|..|+.. ....+.-..+|.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~----~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---A----INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---C----CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc---c----ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 3677777654444555556789999997543110 0 001111111 12235555554 34455556789999
Q ss_pred EeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCC--eeEEEEccCCceEEecCCC
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD--FTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~--~s~~lt~~~G~~vy~wG~n 190 (539)
.|-.......... . ..............|..++.... +.++....+| .|+.|-..
T Consensus 140 iwd~~~~~~~~~~-~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~ 196 (416)
T 2pm9_A 140 IWDMNKCTESPSN-Y-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN-FASIWDLK 196 (416)
T ss_dssp BCBTTTTSSCTTT-C-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS-CEEEEETT
T ss_pred EEECCCCcccccc-c-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEECC
Confidence 9965433210000 0 00000001111233666665543 3344433566 88888543
No 58
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=71.49 E-value=73 Score=30.48 Aligned_cols=70 Identities=11% Similarity=-0.090 Sum_probs=34.6
Q ss_pred cEEEEEeCC-ceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEE-ccCCceEEecC
Q 009248 111 KIKKAGAGR-SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLS-SVEGASILNAG 188 (539)
Q Consensus 111 ~I~~Ia~G~-~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt-~~~G~~vy~wG 188 (539)
.|..|+... ...+.-..||.|..|-......+.. ...........|..|+...+-..+++ ..+| .|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~-------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIV-------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-CIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE-------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE-------eeccccCCCCCEEEEEECCCCCEEEEEeCCC-eEEEEE
Confidence 366776543 3444457889999995432211000 00000011234777766544443333 2566 788884
No 59
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=70.58 E-value=76 Score=30.34 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=54.7
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~w 134 (539)
.|..++..- ....+.-..||.|..|-......+ ........--...|..|+...+ +.+.-..||.|..|
T Consensus 84 ~v~~~~~s~-d~~l~~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 84 GVADLTWVG-ERGILVASDSGAVELWELDENETL--------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp CEEEEEEET-TTEEEEEETTSEEEEEEECTTSSC--------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeC-CCeEEEEECCCEEEEEeccCCCce--------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 467777653 345555667899999964322110 0111111011234666665543 34444678889988
Q ss_pred ecCCCCCCCCCCCCCcccccceeec---cCceEEEEeCCCe-eEEE-EccCCceEEecC
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCL---VSEVTATACGADF-TVWL-SSVEGASILNAG 188 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~---~~~i~~ia~G~~~-s~~l-t~~~G~~vy~wG 188 (539)
-.... .++..+ ...|..++..... .+++ ...++ .|..|=
T Consensus 155 d~~~~--------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~-~v~iwd 198 (344)
T 4gqb_B 155 DLAQQ--------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN-RILLWD 198 (344)
T ss_dssp ETTTT--------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTS-CEEEEE
T ss_pred ECCCC--------------cEEEEEcCcCCceEEEEecCCCCCceeeecccc-cccccc
Confidence 54321 112222 2347777664432 2333 22567 888884
No 60
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=70.52 E-value=97 Score=31.53 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=54.1
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~ 133 (539)
..|..++......+.+....+|.|..|-.+ +++ ...+.. ....|..|+...+ +.+....++.|+.
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~ 411 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKL 411 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETT--CCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEE
Confidence 356666665545566666778888888532 211 111111 1234666665433 3444467888888
Q ss_pred eecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee-EEEEccCCceEEecC
Q 009248 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAG 188 (539)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG 188 (539)
|-. .+++ ...+......|..++...+.. ++....++ .|+.|-
T Consensus 412 ~~~--~~~~----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~-~v~~w~ 454 (577)
T 2ymu_A 412 WNR--NGQL----------LQTLTGHSSSVWGVAFSPDDQTIASASDDK-TVKLWN 454 (577)
T ss_dssp ECT--TCCE----------EEEEECCSSCEEEEEECTTSSEEEEEETTS-EEEEEE
T ss_pred EeC--CCCE----------EEEecCCCCCeEEEEECCCCCEEEEEcCCC-EEEEEE
Confidence 832 1111 011111223466666544332 33333566 888884
No 61
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=68.99 E-value=4.1 Score=22.69 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=10.8
Q ss_pred CCCCCCCccCCCCCCC
Q 009248 489 KASGRGRGKAANKLSG 504 (539)
Q Consensus 489 ~~~~~~~~~~~~~~~~ 504 (539)
++|-|||+++.|+...
T Consensus 4 pKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 4 PKRPRGRPKGSKNKGA 19 (26)
T ss_dssp CCCCSSCCTTCCCCSC
T ss_pred CcCCCCCcCcccccCc
Confidence 4667777877766554
No 62
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=68.64 E-value=85 Score=30.09 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC--ceeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~--~ht~~Lt~~G~vy~w 134 (539)
.|..++........++...+|.|+.|- ..++ ....+.. ....|..|+... .+.++...+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 677777665455666667789999995 1111 1111221 123466666643 345555778999999
Q ss_pred ecC
Q 009248 135 GWN 137 (539)
Q Consensus 135 G~n 137 (539)
-..
T Consensus 177 d~~ 179 (425)
T 1r5m_A 177 NVI 179 (425)
T ss_dssp ETT
T ss_pred ECC
Confidence 653
No 63
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=68.28 E-value=77 Score=29.46 Aligned_cols=164 Identities=10% Similarity=-0.094 Sum_probs=82.9
Q ss_pred CCeEEEEEeCCCc-EEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEecc-CCCCcEEEEEeC-CceeEEEecCCCEE
Q 009248 56 VDIRFVAAGCVSC-HCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE-LSKYKIKKAGAG-RSHTVVVTEDGNSL 132 (539)
Q Consensus 56 ~~i~~v~~gcG~~-h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Ia~G-~~ht~~Lt~~G~vy 132 (539)
..|..++...... +.++-..+|.|+.|-....+++ ..+.. .....|..|+.. ....+....+|.|+
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDGLIE 125 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEE
T ss_pred CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEE
Confidence 3677776654455 6677778999999965122221 22221 012346666544 45566667899999
Q ss_pred EeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccc
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~ 212 (539)
.|-......-. ......+.........|..++......++.+ .++ .|+.|-....+..
T Consensus 126 iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~-~i~i~d~~~~~~~----------------- 183 (342)
T 1yfq_A 126 VIDPRNYGDGV---IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-NNS-QVQWFRLPLCEDD----------------- 183 (342)
T ss_dssp EECHHHHTTBC---EEEEESCSSSSSSCCCEEEEEECSSEEEEEE-STT-EEEEEESSCCTTC-----------------
T ss_pred EEccccccccc---ccccCCeeeEEeeCCceEEEEecCCcEEEEe-CCC-eEEEEECCccccc-----------------
Confidence 99543210000 0000000000002234777777777733444 777 9999865431100
Q ss_pred cccccCCceeecccCCCeEEEEEeCC---CeeEEEccCCcEEEEecCCC
Q 009248 213 AYEAQPRPRAIAALAGETIVKVACGT---NHTVAVDSKGYVYTWGFGGY 258 (539)
Q Consensus 213 ~~~~~~~p~~i~~~~~~~I~~Ia~G~---~hs~alt~~G~vy~wG~n~~ 258 (539)
............|..|+... ...++-..+|.|+.|-....
T Consensus 184 ------~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 184 ------NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 00111111123466666543 45555677889999876543
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.80 E-value=1.3e+02 Score=32.10 Aligned_cols=232 Identities=9% Similarity=0.032 Sum_probs=111.8
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~vy~w 134 (539)
.|..++........++-..+|.|+.|-.... + ....+.. ....|..++.. ....++...+|.|+.|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-~----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-V----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTT-E----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCC-c----------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 5777776654555666667888999864321 1 1111211 12235555443 3445555788999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCee-EEEEccCCceEEecCCCCccccCCCCCCCCcccCCccccc
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLA 213 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s-~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 213 (539)
-...... ...+......|..++...+.. ++....+| .|..|-......
T Consensus 83 ~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~------------------- 131 (814)
T 3mkq_A 83 NYNTGEK-----------VVDFEAHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWA------------------- 131 (814)
T ss_dssp ETTTCCE-----------EEEEECCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTSE-------------------
T ss_pred ECCCCcE-----------EEEEecCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCce-------------------
Confidence 6532211 011111223466666655443 33332566 888874321100
Q ss_pred ccccCCceeecccCCCeEEEEEeCC---CeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEE
Q 009248 214 YEAQPRPRAIAALAGETIVKVACGT---NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVI 290 (539)
Q Consensus 214 ~~~~~~p~~i~~~~~~~I~~Ia~G~---~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I 290 (539)
....+. .....|..++... ...+....+|.|+.|-..... ....+..... ..+..+
T Consensus 132 -----~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~----~~v~~~ 190 (814)
T 3mkq_A 132 -----LEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQE----RGVNYV 190 (814)
T ss_dssp -----EEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCT----TCCCEE
T ss_pred -----EEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCC----CCEEEE
Confidence 001111 1123466666543 344455678999999643211 0111111110 112233
Q ss_pred Ee----cCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcE--EEEEe-CCCEEEEeCCC
Q 009248 291 SA----GSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMH--HFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 291 ~~----G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h--~~~lt-~G~vy~wG~n~ 358 (539)
+. .....++...+|.|++|-.... .....+.. ....|..++..... .++.. ||.|+.|-...
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 33 2334455567889999954221 11122221 22356666654432 33333 89999996543
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=67.34 E-value=1.4e+02 Score=32.03 Aligned_cols=111 Identities=9% Similarity=-0.024 Sum_probs=59.5
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~ 133 (539)
..|..++........++...+|.|++|-...... ...+.. ....|..++.... +.+....+|.|..
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 4677777665556677777899999997543211 111211 1234666665544 3444567888988
Q ss_pred eecCCCCCCCCCCCCCcccccceeeccCceEEEEeCC--CeeEEEEccCCceEEecCC
Q 009248 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA--DFTVWLSSVEGASILNAGL 189 (539)
Q Consensus 134 wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~--~~s~~lt~~~G~~vy~wG~ 189 (539)
|-...... ....+......|..++... ...++....+| .|+.|-.
T Consensus 124 w~~~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~ 170 (814)
T 3mkq_A 124 WNWENNWA----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSL 170 (814)
T ss_dssp EEGGGTSE----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEET
T ss_pred EECCCCce----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEEC
Confidence 85422100 0011111123366666543 23344443677 8998854
No 66
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=67.07 E-value=73 Score=29.82 Aligned_cols=59 Identities=7% Similarity=0.118 Sum_probs=29.7
Q ss_pred CceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEc----CCcEEEEEeCCCEEEEeC
Q 009248 295 VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS----GNMHHFVGADSSCISWGH 356 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~----G~~h~~~lt~G~vy~wG~ 356 (539)
.|++++ .++.||++|-..... ...-..+..+.......+.. -..|++++.+++||++|-
T Consensus 189 ~~~~~~-~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 251 (315)
T 4asc_A 189 LFGATV-HDGRIIVAAGVTDTG--LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGG 251 (315)
T ss_dssp SCEEEE-ETTEEEEEEEECSSS--EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEE
T ss_pred ceEEEE-ECCEEEEEeccCCCC--ccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECC
Confidence 344443 377999998643211 11111112222223333321 124666666999999984
No 67
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=66.61 E-value=26 Score=33.13 Aligned_cols=18 Identities=17% Similarity=0.056 Sum_probs=13.6
Q ss_pred cEEEEEeCCCEEEEeCCC
Q 009248 341 MHHFVGADSSCISWGHAQ 358 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~n~ 358 (539)
.|++++.+++||++|-..
T Consensus 246 ~~~~~~~~~~i~v~GG~~ 263 (318)
T 2woz_A 246 SISLVSLAGSLYAIGGFA 263 (318)
T ss_dssp SCEEEEETTEEEEECCBC
T ss_pred ceEEEEECCEEEEECCee
Confidence 467777799999998543
No 68
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=65.78 E-value=1.1e+02 Score=30.20 Aligned_cols=240 Identities=9% Similarity=0.059 Sum_probs=116.5
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC----CceeEEEecCCCE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG----RSHTVVVTEDGNS 131 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G----~~ht~~Lt~~G~v 131 (539)
..|..++.... ...+.-..||.|..|-....- ....+.. ....|..++.- ..+.+.-..+|.|
T Consensus 163 ~~V~~l~~~~~-~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 163 GGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEEECST-TEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred cCEEEEEEcCC-CEEEEEeCCCCEEEEECCCCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 36777775422 255666779999999753211 1111211 12345555443 2445566789999
Q ss_pred EEeecCCCCCCCCCCCCCcc---------cccceeec---cCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCC
Q 009248 132 LAFGWNKHGQLGSGSIRNEI---------EPSPVRCL---VSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGT 199 (539)
Q Consensus 132 y~wG~n~~gqlG~~~~~~~~---------~~~~~~~~---~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~ 199 (539)
..|-......+......... .+..+..+ ...+..++......+... .+| .|+.|-.....
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~-~i~vwd~~~~~------ 301 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS-YDN-TLIVWDVAQMK------ 301 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE-TTS-CEEEEETTTTE------
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe-CCC-eEEEEECCCCc------
Confidence 99976543322111000000 00001111 123555654444444444 677 88888543211
Q ss_pred CCCCcccCCcccccccccCCceeecccCCCeEEEEEeCC--CeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecc
Q 009248 200 DNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDV 277 (539)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~ 277 (539)
+..........|..++... ...+.-..+|.|+.|-... + ..+..
T Consensus 302 --------------------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-~-------------~~~~~ 347 (464)
T 3v7d_B 302 --------------------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-G-------------ELMYT 347 (464)
T ss_dssp --------------------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-T-------------EEEEE
T ss_pred --------------------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C-------------cEEEE
Confidence 0000011123455555533 3555567788999995432 1 12222
Q ss_pred cccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEeCCCEEEEeCC
Q 009248 278 FQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHA 357 (539)
Q Consensus 278 ~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt~G~vy~wG~n 357 (539)
+... ...|..++....+.+....+|.|.+|-..... ............+..+.......++-.+|.|+.|-..
T Consensus 348 ~~~h--~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 348 LQGH--TALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp ECCC--SSCEEEEEECSSEEEEEETTSEEEEEETTTCC-----EEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETT
T ss_pred EeCC--CCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----eeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECC
Confidence 2211 12345666666677777889999999654311 1111111222234555554443333338899999543
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=65.52 E-value=1e+02 Score=30.01 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=35.4
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEecc-CCCCcEEEEEeCCc--eeEEEecCCCEEEeecC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE-LSKYKIKKAGAGRS--HTVVVTEDGNSLAFGWN 137 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~wG~n 137 (539)
..+.+++..|+.||.|-... |++ ...+.. -....|..|+...+ +.+.-+.||.|..|-..
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~~----------~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GDI----------LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE----------EEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE----------EEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 45678888899999996432 111 011111 11234777776544 44444788999999653
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=58.93 E-value=1.2e+02 Score=28.33 Aligned_cols=79 Identities=8% Similarity=-0.046 Sum_probs=45.0
Q ss_pred CCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeE
Q 009248 46 SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTV 123 (539)
Q Consensus 46 ~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~ 123 (539)
.+..+..-. ..|..++........+.-..+|.|+.|-...... ...+.. ....|..|+.. ..+.+
T Consensus 24 ~~~~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 24 KAIKLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-----------LGTLDG-HTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp EEEEEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEE
T ss_pred ccEEEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-----------hhhhhh-cCCcEEEEEEcCCCCEEE
Confidence 344444332 3677787765445555666789999996432111 112221 12347666665 33555
Q ss_pred EEecCCCEEEeecC
Q 009248 124 VVTEDGNSLAFGWN 137 (539)
Q Consensus 124 ~Lt~~G~vy~wG~n 137 (539)
....+|.|+.|-..
T Consensus 91 s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 91 TGSADYSIKLWDVS 104 (369)
T ss_dssp EEETTTEEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 55788999999643
No 71
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=58.55 E-value=76 Score=29.42 Aligned_cols=16 Identities=6% Similarity=-0.224 Sum_probs=12.9
Q ss_pred cEEEEEeCCCEEEEeC
Q 009248 341 MHHFVGADSSCISWGH 356 (539)
Q Consensus 341 ~h~~~lt~G~vy~wG~ 356 (539)
.|++++.+++||++|-
T Consensus 197 ~~~~~~~~~~iyv~GG 212 (302)
T 2xn4_A 197 GAGVGVLNNLLYAVGG 212 (302)
T ss_dssp SCEEEEETTEEEEECC
T ss_pred cccEEEECCEEEEECC
Confidence 4677777999999984
No 72
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=57.74 E-value=1.3e+02 Score=28.61 Aligned_cols=234 Identities=13% Similarity=0.000 Sum_probs=105.0
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~w 134 (539)
.|..++... ....++-..+|.|..|-......+. . ....... -...|..|+...+ +.+.-..+|.|..|
T Consensus 96 ~V~~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~------~-~~~~~~~-h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 96 GVTDVAWVS-EKGILVASDSGAVELWEILEKESLL------V-NKFAKYE-HDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp CEEEEEEET-TTEEEEEETTSCEEEC--------C------C-CCEEECC-CSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CEEEEEEcC-CCCEEEEECCCEEEEeeccccceeE------E-EeeccCC-CCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 466666543 2345555667888888432211100 0 0001101 1234666666544 33444678999999
Q ss_pred ecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCC--eeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccc
Q 009248 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD--FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (539)
Q Consensus 135 G~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~--~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~ 212 (539)
-.... + ....+......|..|+.... ..++....+| .|..|=......+
T Consensus 167 d~~~~-~----------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~~~~----------------- 217 (357)
T 4g56_B 167 DLSQK-A----------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKPKPA----------------- 217 (357)
T ss_dssp ETTTT-E----------EEEEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSSSCB-----------------
T ss_pred ECCCC-c----------EEEEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCCcee-----------------
Confidence 54321 0 00011111234777765432 2333333677 8998853321100
Q ss_pred cccccCCceeecccCCCeEEEEEeCC--CeeEE-EccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceE
Q 009248 213 AYEAQPRPRAIAALAGETIVKVACGT--NHTVA-VDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV 289 (539)
Q Consensus 213 ~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~a-lt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~ 289 (539)
...........|..|+... .+.++ -..++.|+.|-.... + ....+... ...|..
T Consensus 218 -------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~----------~~~~~~~~-----~~~v~~ 274 (357)
T 4g56_B 218 -------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-D----------SAQTSAVH-----SQNITG 274 (357)
T ss_dssp -------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-G----------GCEEECCC-----SSCEEE
T ss_pred -------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-c----------EeEEEecc-----ceeEEE
Confidence 0000011123456666532 23333 367888999854321 1 01111111 112345
Q ss_pred EEecC---CceEEEeCCCcEEEecCCCCCCCCccceeeeccCC-CCcEEEEEcC--CcEEEEE-e-CCCEEEEeCCCC
Q 009248 290 ISAGS---VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLS-GWNLRCMDSG--NMHHFVG-A-DSSCISWGHAQY 359 (539)
Q Consensus 290 I~~G~---~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~-~~~i~~i~~G--~~h~~~l-t-~G~vy~wG~n~~ 359 (539)
|+... ...+.-..||.|++|-... ...+..+. ...|..|+.. +...++. . ||.|+.|=....
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~--------~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADF--------SEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTS--------CEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCC--------CcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 54432 2333456789999994321 11122122 2257788764 2333443 3 899999965443
No 73
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=57.66 E-value=81 Score=31.16 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=41.5
Q ss_pred EEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCC
Q 009248 112 IKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 112 I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n 190 (539)
|.+|++ ....+++..++.|+.|-.....+.. ....+...+..+.+-....++++ .+| .|+.|-..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~~~~~~v~~i~~~~p~~av~~-~dG-~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVTSFEKPVFQLKNVNNTLVILN-SVN-DLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEEECSSCEEEEEECSSEEEEEE-TTS-EEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------ccceeecceeeEEecCCCEEEEE-CCC-CEEEEEcc
Confidence 999999 7778888899999999654433211 11222223555555554455555 788 99999543
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=56.43 E-value=1.3e+02 Score=28.15 Aligned_cols=252 Identities=7% Similarity=-0.079 Sum_probs=110.1
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCEE
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSL 132 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~vy 132 (539)
...|..++........++-..+|.|+.|-.... + ......+.. ....|..|+.. ....+....+|.|+
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~-~--------~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN-K--------WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAY 77 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT-E--------EEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC-c--------EEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEE
Confidence 345666665543444444557888998864221 0 001111211 12346666554 33444556788888
Q ss_pred EeecCCCCCCCCCCCCCcccccc-eeeccCceEEEEeCCCe-eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcc
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSP-VRCLVSEVTATACGADF-TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSV 210 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~-~~~~~~~i~~ia~G~~~-s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~ 210 (539)
.|-.... + ..+.. .......|..++...+. .++....+| .|+.|-......
T Consensus 78 vwd~~~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~i~d~~~~~~---------------- 130 (372)
T 1k8k_C 78 VWTLKGR-T---------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-VISICYFEQEND---------------- 130 (372)
T ss_dssp EEEEETT-E---------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-SEEEEEEETTTT----------------
T ss_pred EEECCCC-e---------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-EEEEEEecCCCc----------------
Confidence 8854211 0 00000 01112336666654332 233332556 777764322100
Q ss_pred cccccccCCceeecccCCCeEEEEEeCCC--eeEEEccCCcEEEEecCCCCCCCCCCCC-----CccccEEecccccCCC
Q 009248 211 KLAYEAQPRPRAIAALAGETIVKVACGTN--HTVAVDSKGYVYTWGFGGYGRLGHREQK-----DEWVPRRVDVFQRNNV 283 (539)
Q Consensus 211 ~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~--hs~alt~~G~vy~wG~n~~GqLG~~~~~-----~~~~p~~v~~~~~~~~ 283 (539)
......+.......|..++.... +.++-..+|.|+.|-..... +...... .......+..+...
T Consensus 131 ------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 201 (372)
T 1k8k_C 131 ------WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERPAPTPWGSKMPFGELMFESSSS-- 201 (372)
T ss_dssp ------EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCCCCBTTBSCCCTTCEEEECCCC--
T ss_pred ------ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc-ccccccccccccccchhhheEecCCC--
Confidence 00001111111235666665433 44445678999999743211 0000000 00011122222111
Q ss_pred CCCceEEEecC--CceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCC-cEEEEEe-CCCEEEEeCCC
Q 009248 284 LPPEAVISAGS--VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGN-MHHFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 284 ~~~v~~I~~G~--~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~-~h~~~lt-~G~vy~wG~n~ 358 (539)
...+..++... .+.++...+|.|++|-.... .+..........|..++... ...++.. ++.|++|-...
T Consensus 202 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 202 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKK------MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT------TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC------ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 11234454433 34455567888888864321 11111111222466665442 3344444 88888887644
No 75
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=56.23 E-value=1.2e+02 Score=27.71 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=45.0
Q ss_pred CCeEEEEEeCC--CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc----eeEEEecCC
Q 009248 56 VDIRFVAAGCV--SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS----HTVVVTEDG 129 (539)
Q Consensus 56 ~~i~~v~~gcG--~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~----ht~~Lt~~G 129 (539)
..|..++.... ....+....||.|..|-.......... ....+..........|..|+.... +.+....+|
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg 134 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG---RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG 134 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS---CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc---cCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC
Confidence 46777876531 345566677999999986532211000 001111111112345888877644 455667899
Q ss_pred CEEEeecCC
Q 009248 130 NSLAFGWNK 138 (539)
Q Consensus 130 ~vy~wG~n~ 138 (539)
.|+.|-...
T Consensus 135 ~v~iwd~~~ 143 (351)
T 3f3f_A 135 ILRLYDALE 143 (351)
T ss_dssp EEEEEECSS
T ss_pred cEEEecCCC
Confidence 999996543
No 76
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=55.95 E-value=1.4e+02 Score=28.51 Aligned_cols=169 Identities=13% Similarity=0.115 Sum_probs=89.8
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccc--eEeccCCCCcEEEEEeCC-----ceeEEEecCC
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAGR-----SHTVVVTEDG 129 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P--~~v~~~~~~~I~~Ia~G~-----~ht~~Lt~~G 129 (539)
.+..+.......+.+++|+.|++|..-... |........-.| ..++...+.+|+.+.+.. ...+++|.+|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 455554445577889999999999886432 221111111112 233334567888887664 4678889999
Q ss_pred CEEEeecCCCCCCCCCCCCCcccccceeeccCceEE--EEeCCCeeEEEEccCCceEEecCCC--CccccCCCCCCCCcc
Q 009248 130 NSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTA--TACGADFTVWLSSVEGASILNAGLP--QYGQLGHGTDNEYNT 205 (539)
Q Consensus 130 ~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~--ia~G~~~s~~lt~~~G~~vy~wG~n--~~GqLG~~~~~~~~~ 205 (539)
.+.-.-...+-.... .......+.. ...++. +..+..+.+++| ..| .+|.+-.. ..-.+|....
T Consensus 120 ~iKr~~l~~~~~~~r----~G~~~i~lke-~D~lv~~~~~~~~d~ill~T-~~G-~~~rf~~~~~eip~~gr~a~----- 187 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRS----GGIVAVNLRD-NDELVGAVLCSAGDDLLLVS-ANG-QSIRFSATDEALRPMGRATS----- 187 (327)
T ss_dssp EEEEEEGGGGCCCCS----SCEESCBCCT-TCCEEEEEEECTTCEEEEEE-TTS-EEEEEECCTTTSCCCCTTSB-----
T ss_pred EEEEeEHHHhhcccc----CceEEEEECC-CCEEEEEEEecCCCEEEEEE-CCC-eEEEEECcccccCcCCcCCC-----
Confidence 988776544321110 0000000000 122332 334566677777 888 99877655 3333322211
Q ss_pred cCCcccccccccCCcee-ecccCCCeEEEEEeCC--CeeEEEccCCcEEEEe
Q 009248 206 KDSSVKLAYEAQPRPRA-IAALAGETIVKVACGT--NHTVAVDSKGYVYTWG 254 (539)
Q Consensus 206 ~~~~~~~~~~~~~~p~~-i~~~~~~~I~~Ia~G~--~hs~alt~~G~vy~wG 254 (539)
-+. +..-.++.|+.+..-. .+.+++|++|.+.-.=
T Consensus 188 --------------Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 188 --------------GVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp --------------CEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred --------------CeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 111 1112345677776643 3567778888666553
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=54.00 E-value=1.4e+02 Score=27.70 Aligned_cols=71 Identities=11% Similarity=-0.087 Sum_probs=38.0
Q ss_pred CCeEEEEEeCCCcEEEEEe----cCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc-----eeEEEe
Q 009248 56 VDIRFVAAGCVSCHCVAVD----VEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS-----HTVVVT 126 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt----~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~-----ht~~Lt 126 (539)
..|..++........++.. .+|.|+.|-..... ..+... ......|..|+.... ..+.-.
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~ 87 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLRE-IEKAKPIKCGTFGATSLQQRYLATGD 87 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEE-EEESSCEEEEECTTCCTTTCCEEEEE
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceee-ecccCcEEEEEEcCCCCCCceEEEec
Confidence 3677777653222333333 27899999644211 111111 011234777777653 344456
Q ss_pred cCCCEEEeecC
Q 009248 127 EDGNSLAFGWN 137 (539)
Q Consensus 127 ~~G~vy~wG~n 137 (539)
.+|.|..|-..
T Consensus 88 ~dg~i~iwd~~ 98 (357)
T 3i2n_A 88 FGGNLHIWNLE 98 (357)
T ss_dssp TTSCEEEECTT
T ss_pred CCCeEEEEeCC
Confidence 78999999554
No 78
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=53.98 E-value=1.5e+02 Score=28.10 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=93.6
Q ss_pred CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC-----CceeEEEecC
Q 009248 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG-----RSHTVVVTED 128 (539)
Q Consensus 54 ~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G-----~~ht~~Lt~~ 128 (539)
.+..+..+.......+.+++|+.|++|.+-...-=..+.... -.+....+....+.+|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK-GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC-CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 344555555555578899999999999987542211111100 0111123333346678777664 3468888999
Q ss_pred CCEEEeecCCCCCC-CCCCCCCcccccceeeccCceEEEE--eCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcc
Q 009248 129 GNSLAFGWNKHGQL-GSGSIRNEIEPSPVRCLVSEVTATA--CGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNT 205 (539)
Q Consensus 129 G~vy~wG~n~~gql-G~~~~~~~~~~~~~~~~~~~i~~ia--~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~ 205 (539)
|.++-.-...+-.. +.+ .....+.. ...++.+. .+..+.+++| .+| .++.+-....-..|....
T Consensus 124 G~~kr~~l~~~~~~r~~G-----~~~i~L~~-~d~lv~~~~~~~~~~i~l~T-~~G-~~~r~~~~ev~~~gR~~~----- 190 (312)
T 1suu_A 124 GKIARFESTDFKAVKSRG-----VIVIKLND-KDFVTSAEIVFKDEKVICLS-KKG-SAFIFNSRDVRLTNRGTQ----- 190 (312)
T ss_dssp SEEEEEEGGGGCC----C-----EECBCCCT-TCCEEEEEEECTTCEEEEEE-TTS-EEEEEEGGGSCBCCTTBC-----
T ss_pred CeEEEEEHHHhhccCCCc-----EEEEecCC-CCEEEEEEEeCCCCEEEEEe-CCC-cEEEEEHHHccccCCCCC-----
Confidence 99998866544211 011 00011110 12344333 3455666677 788 777665444322222111
Q ss_pred cCCcccccccccCCceeeccc-CCCeEEEEEe--CCCeeEEEccCCcEEEEecCCCCCCC
Q 009248 206 KDSSVKLAYEAQPRPRAIAAL-AGETIVKVAC--GTNHTVAVDSKGYVYTWGFGGYGRLG 262 (539)
Q Consensus 206 ~~~~~~~~~~~~~~p~~i~~~-~~~~I~~Ia~--G~~hs~alt~~G~vy~wG~n~~GqLG 262 (539)
-+.+..+ .+..|+.+.. ...+.++++++|.+...-...+-..+
T Consensus 191 --------------Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~ 236 (312)
T 1suu_A 191 --------------GVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELK 236 (312)
T ss_dssp --------------CEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred --------------CeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccC
Confidence 1111112 2345665543 34567788888887777665553333
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.76 E-value=1.6e+02 Score=28.35 Aligned_cols=147 Identities=12% Similarity=0.101 Sum_probs=77.6
Q ss_pred EEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC--ceeEEEecCCCEEEeec
Q 009248 59 RFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 59 ~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~--~ht~~Lt~~G~vy~wG~ 136 (539)
..++.. ..+.++...+|.|+.|-....- ....+.......|..|+... .+.++-..+|.|+.|-.
T Consensus 97 ~~~~~s--~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 97 NLLDWS--NLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp BCEEEC--TTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEeec--CCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 335543 5678888899999999754321 11122221233466666543 34555567899999964
Q ss_pred CCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccc
Q 009248 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (539)
Q Consensus 137 n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~ 216 (539)
.....+ ..+......|..++......+... .+| .|+.|-....+..
T Consensus 164 ~~~~~~-----------~~~~~~~~~v~~~~~~~~~l~~~~-~dg-~i~i~d~~~~~~~--------------------- 209 (401)
T 4aez_A 164 ESQTKL-----------RTMAGHQARVGCLSWNRHVLSSGS-RSG-AIHHHDVRIANHQ--------------------- 209 (401)
T ss_dssp TTCCEE-----------EEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETTSSSCE---------------------
T ss_pred cCCeEE-----------EEecCCCCceEEEEECCCEEEEEc-CCC-CEEEEecccCcce---------------------
Confidence 322110 111112234777776444433444 677 9998864421100
Q ss_pred cCCceeecccCCCeEEEEEeCC--CeeEEEccCCcEEEEecC
Q 009248 217 QPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVYTWGFG 256 (539)
Q Consensus 217 ~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~vy~wG~n 256 (539)
...+. .....|..++... .+.+.-..+|.|+.|-..
T Consensus 210 ---~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 210 ---IGTLQ-GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp ---EEEEE-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ---eeEEc-CCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 01111 1123466666543 344445678899999654
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=52.63 E-value=1.5e+02 Score=27.54 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=38.3
Q ss_pred CcEEEEEeCCce-eEEEec-----CCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCC----eeEEEEcc
Q 009248 110 YKIKKAGAGRSH-TVVVTE-----DGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD----FTVWLSSV 179 (539)
Q Consensus 110 ~~I~~Ia~G~~h-t~~Lt~-----~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~----~s~~lt~~ 179 (539)
..|..|+..... .++++. +|.|+.|-..... ............|..++.... ..++....
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 357777776543 333333 7889999543211 011111112345777777664 44444436
Q ss_pred CCceEEecCCCC
Q 009248 180 EGASILNAGLPQ 191 (539)
Q Consensus 180 ~G~~vy~wG~n~ 191 (539)
+| .|..|-...
T Consensus 89 dg-~i~iwd~~~ 99 (357)
T 3i2n_A 89 GG-NLHIWNLEA 99 (357)
T ss_dssp TS-CEEEECTTS
T ss_pred CC-eEEEEeCCC
Confidence 77 899886543
No 81
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=52.26 E-value=1.2e+02 Score=30.03 Aligned_cols=138 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred EEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEec
Q 009248 231 IVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWG 310 (539)
Q Consensus 231 I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG 310 (539)
|.+|++ ....+++..+|.|..|=....-+. ..+..+.. ++..|.+-....++++.+|.|++|-
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~-----------~~~~~~~~-----~v~~i~~~~p~~av~~~dG~L~v~d 152 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEF-----------RTVTSFEK-----PVFQLKNVNNTLVILNSVNDLSALD 152 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCE-----------EEEEECSS-----CEEEEEECSSEEEEEETTSEEEEEE
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhcc-----------Cccceeec-----ceeeEEecCCCEEEEECCCCEEEEE
Confidence 889999 777777778899999865432211 11111111 1234555554577889999999995
Q ss_pred CCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeecc--CCCCEEE
Q 009248 311 KLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVI 387 (539)
Q Consensus 311 ~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~--l~~~~v~ 387 (539)
-.... ..+ +. ..|..|+....-.++.. ||.+..| .-..+++.. ......|..+.. ....+|.
T Consensus 153 l~~~~----~~~--~~----~~Vs~v~WSpkG~~vg~~dg~i~~~-~~~~~~~~~----k~~I~~Pp~~~~~~~~~~~V~ 217 (388)
T 1xip_A 153 LRTKS----TKQ--LA----QNVTSFDVTNSQLAVLLKDRSFQSF-AWRNGEMEK----QFEFSLPSELEELPVEEYSPL 217 (388)
T ss_dssp TTTCC----EEE--EE----ESEEEEEECSSEEEEEETTSCEEEE-EEETTEEEE----EEEECCCHHHHTSCTTTSEEE
T ss_pred ccCCc----ccc--cc----CCceEEEEcCCceEEEEcCCcEEEE-cCCCccccc----cceecCCcccccccCCCeeEE
Confidence 43211 111 11 15666665555433333 7777766 211111100 011233333321 1245777
Q ss_pred EEEecCCceEEEE
Q 009248 388 SVACGYGHSLVIV 400 (539)
Q Consensus 388 ~va~G~~ht~~l~ 400 (539)
.|.-=..+.++++
T Consensus 218 sI~wl~~~~flv~ 230 (388)
T 1xip_A 218 SVTILSPQDFLAV 230 (388)
T ss_dssp EEEESSSSEEEEE
T ss_pred EEEEecCCeEEEE
Confidence 7766666666655
No 82
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=47.47 E-value=1.8e+02 Score=27.04 Aligned_cols=169 Identities=11% Similarity=0.054 Sum_probs=90.4
Q ss_pred CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC---CceeEEEecCCC
Q 009248 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGN 130 (539)
Q Consensus 54 ~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G---~~ht~~Lt~~G~ 130 (539)
.+..+..+.......+.+++|++|++|..-... |.... .. . + ...+.+|+.+.+- ..+.+++|.+|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~---~~--~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS---KV--S-L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE---EC--C-C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc---cc--c-c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 344566665554466799999999999754321 11000 00 0 3 3356789888771 246888999999
Q ss_pred EEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEe--CCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCC
Q 009248 131 SLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATAC--GADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208 (539)
Q Consensus 131 vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~--G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~ 208 (539)
+.-.-...+-+-. .......+. ....+..+.. +..+.+++| +.| .+|.+-....-.+|......
T Consensus 92 iKr~~l~~~~~~~-----~G~~~i~lk-egD~l~~~~~~~~~~~ill~T-~~G-~~~r~~~~eip~~gR~a~Gv------ 157 (276)
T 3no0_A 92 VKKIPLAEFEYKA-----QGMPIIKLT-EGDEVVSIASSVDETHILLFT-KKG-RVARFSVREVPPSTPGARGV------ 157 (276)
T ss_dssp EEEEEGGGTTTCS-----TTEECSCCC-TTCCEEEEEECCSSCEEEEEE-TTS-EEEEEEGGGSCBCCTTCCCE------
T ss_pred EEEEEHHHhhhhc-----CCeEEEecC-CCCEEEEEEEeCCCCEEEEEE-CCC-EEEEEEhhhCCCcCCCCCCE------
Confidence 9887655543110 000000000 0122444332 444567777 888 99887544433333221110
Q ss_pred cccccccccCCceeecccCCCeEEEEEeC--CCeeEEEccCCcEEEEecCCC
Q 009248 209 SVKLAYEAQPRPRAIAALAGETIVKVACG--TNHTVAVDSKGYVYTWGFGGY 258 (539)
Q Consensus 209 ~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G--~~hs~alt~~G~vy~wG~n~~ 258 (539)
+ .+..-.+..|+.+... ..+.+++|++|.+.-.=..++
T Consensus 158 -----------~-~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 158 -----------Q-GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp -----------E-CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGS
T ss_pred -----------E-EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHc
Confidence 0 0111134566665543 346777899998887765544
No 83
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=45.70 E-value=2.1e+02 Score=27.34 Aligned_cols=58 Identities=16% Similarity=0.243 Sum_probs=29.1
Q ss_pred CceEEEeCCCcEEEecCCCCCCCCccceeeeccC---CCCcEEEEEcCCc-EEEEEe--CCCEEEEeCC
Q 009248 295 VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDL---SGWNLRCMDSGNM-HHFVGA--DSSCISWGHA 357 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l---~~~~i~~i~~G~~-h~~~lt--~G~vy~wG~n 357 (539)
...++-..+|.|++|-.... .....+..+ -...|..++.... ..++.. |+.|..|-..
T Consensus 311 ~~l~~g~~dg~i~vwd~~~~-----~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLLA-----EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEETTTC-----CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CEEEEEECCCCEEEEECCCC-----ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 44445567899999954211 011111111 1224666655433 233333 8899999644
No 84
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=45.32 E-value=2.6e+02 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=17.0
Q ss_pred eEEEEEe-CCCeeEEEccCCcEEEEecC
Q 009248 230 TIVKVAC-GTNHTVAVDSKGYVYTWGFG 256 (539)
Q Consensus 230 ~I~~Ia~-G~~hs~alt~~G~vy~wG~n 256 (539)
.|..++. ...+.+....+|.|..|-..
T Consensus 255 ~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 4666655 33445555678899999643
No 85
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=45.10 E-value=1.8e+02 Score=26.58 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=69.2
Q ss_pred CCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC--CceeEEEecCCCE
Q 009248 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNS 131 (539)
Q Consensus 54 ~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G--~~ht~~Lt~~G~v 131 (539)
.+..+..+.......+.+++|+.|++|.+-..+ |-.+...-.+....+....+.+|+.+.+. ..+.+++|++|.+
T Consensus 31 e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~e---lp~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~ 107 (256)
T 1zvt_A 31 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT---LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 107 (256)
T ss_dssp TTCCEEEEEEEETTSCEEEEETTSEEEEECGGG---SCCSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CCCcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeE
Confidence 344555555444577899999999999987653 21111111111123333346678888763 3457788999988
Q ss_pred EEeecCCCCCCCCCCCCCcccccceeeccCceEEE-Ee--CCCeeEEEEccCCceEEecCCCCcccc
Q 009248 132 LAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTAT-AC--GADFTVWLSSVEGASILNAGLPQYGQL 195 (539)
Q Consensus 132 y~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~i-a~--G~~~s~~lt~~~G~~vy~wG~n~~GqL 195 (539)
.-.-...+-.....- .....+. ....++.+ .+ +..+.+++| .+| .+.-+-.+..-.+
T Consensus 108 Kr~~~~e~~~~~r~G----~~~i~L~-~~d~lv~~~~~~~~~~~i~l~T-~~G-~~lrf~~~ei~~~ 167 (256)
T 1zvt_A 108 FVCTFNDLVARNRAG----KALITLP-ENAHVMPPVVIEDASDMLLAIT-QAG-RMLMFPVSDLPQL 167 (256)
T ss_dssp EEEEGGGGCCCSTTC----EECBCCC-TTCCBCCCEECCCTTCEEEEEE-TTS-EEEEEEGGGSCBC
T ss_pred EEeEHHHhcccCcCc----eEEEEEC-CCCEEEEEEEecCCCCEEEEEc-CCC-eEEEEEHHHCCCc
Confidence 877554441111100 0000000 01122222 22 566777777 788 7776655444333
No 86
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=44.08 E-value=2.2e+02 Score=27.18 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=41.6
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC--ceeEEEecCCCEE
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSL 132 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~--~ht~~Lt~~G~vy 132 (539)
...|..++......+.+.-..||.|+.|-...... ...+... ...|..|+... .+.+....||.|.
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-----------~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-----------PRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-----------CEEEECC-SSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-----------ceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 34677887764455666677889999997542211 1222211 22466665543 3444556788899
Q ss_pred EeecC
Q 009248 133 AFGWN 137 (539)
Q Consensus 133 ~wG~n 137 (539)
.|-..
T Consensus 207 iwd~~ 211 (420)
T 3vl1_A 207 LWECG 211 (420)
T ss_dssp EEETT
T ss_pred EeECC
Confidence 99643
No 87
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=43.22 E-value=3.1e+02 Score=28.65 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=84.9
Q ss_pred CCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEE--eCCceeEEEecCCCEE
Q 009248 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAG--AGRSHTVVVTEDGNSL 132 (539)
Q Consensus 55 ~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia--~G~~ht~~Lt~~G~vy 132 (539)
...|..++.+.-+...++.+.+|.|+.|.... .|-.-. ... .+ ....|..|+ .-..+.+.-+.||+|-
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~----~~---~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKG----NL---SSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSS----CS---TTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCC----cc---ccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 34688888877777788889999999997321 221100 000 00 011244454 4445556667889888
Q ss_pred EeecCCCCCCCCCCCCCcccccceeec-------cCceEEEEeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcc
Q 009248 133 AFGWNKHGQLGSGSIRNEIEPSPVRCL-------VSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNT 205 (539)
Q Consensus 133 ~wG~n~~gqlG~~~~~~~~~~~~~~~~-------~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~ 205 (539)
.|-.... .+.. ..+..+..+ ...|..|+...+. ++....++ .|+.|-.....+.
T Consensus 155 IWd~~~~-~l~~------~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~-tVrlWd~~~~~~~---------- 215 (588)
T 2j04_A 155 FFSIRKN-SENT------PEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNN-SVFSMTVSASSHQ---------- 215 (588)
T ss_dssp EEECCCC-TTTC------CCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTC-CEEEECCCSSSSC----------
T ss_pred EEECCCC-cccc------ccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCC-eEEEEECCCCccc----------
Confidence 8865431 1100 000011111 1358888777777 55554666 9999975432210
Q ss_pred cCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEEEEecC
Q 009248 206 KDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFG 256 (539)
Q Consensus 206 ~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n 256 (539)
..+..+.......|.+|+.. ...+|...++.|..|-..
T Consensus 216 ------------~~~~tL~~~h~~~V~svaFs-g~~LASa~~~tIkLWd~~ 253 (588)
T 2j04_A 216 ------------PVSRMIQNASRRKITDLKIV-DYKVVLTCPGYVHKIDLK 253 (588)
T ss_dssp ------------CCEEEEECCCSSCCCCEEEE-TTEEEEECSSEEEEEETT
T ss_pred ------------cceeeecccccCcEEEEEEE-CCEEEEEeCCeEEEEECC
Confidence 00111211122235555553 356666678899999754
No 88
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=42.99 E-value=1.2e+02 Score=27.53 Aligned_cols=11 Identities=9% Similarity=0.459 Sum_probs=7.1
Q ss_pred CCCceEEEecC
Q 009248 17 EKGGELLFCGS 27 (539)
Q Consensus 17 ~~~G~vy~wG~ 27 (539)
..+|.||+...
T Consensus 86 ~~~g~l~v~~~ 96 (286)
T 1q7f_A 86 RNSGDIIVTER 96 (286)
T ss_dssp TTTTEEEEEEC
T ss_pred cCCCeEEEEcC
Confidence 35677777764
No 89
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=40.87 E-value=65 Score=30.20 Aligned_cols=16 Identities=6% Similarity=-0.159 Sum_probs=11.7
Q ss_pred ceeEEEecCCCEEEeec
Q 009248 120 SHTVVVTEDGNSLAFGW 136 (539)
Q Consensus 120 ~ht~~Lt~~G~vy~wG~ 136 (539)
.|++++. +++||.+|-
T Consensus 91 ~~~~~~~-~~~lyv~GG 106 (315)
T 4asc_A 91 LFGLGEA-LNSIYVVGG 106 (315)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceeEEEE-CCEEEEEeC
Confidence 4565554 789999986
No 90
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=40.79 E-value=83 Score=30.01 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=13.3
Q ss_pred CcEEEEEeCCCEEEEeC
Q 009248 340 NMHHFVGADSSCISWGH 356 (539)
Q Consensus 340 ~~h~~~lt~G~vy~wG~ 356 (539)
..|++++.+++||++|-
T Consensus 110 ~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp SSEEEEEETTEEEEEEC
T ss_pred ccceEEEECCEEEEEeC
Confidence 35666667999999994
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=40.33 E-value=2.7e+02 Score=27.08 Aligned_cols=254 Identities=7% Similarity=0.003 Sum_probs=111.8
Q ss_pred CeEEEEEeCC-CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccce-EeccCCCCcEEEEEeCCc---eeEEEecCCCE
Q 009248 57 DIRFVAAGCV-SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPT-IVSELSKYKIKKAGAGRS---HTVVVTEDGNS 131 (539)
Q Consensus 57 ~i~~v~~gcG-~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~-~v~~~~~~~I~~Ia~G~~---ht~~Lt~~G~v 131 (539)
.|..++.... ....+....+|.|++|-......... ......|. .+.. ....|..|+.... +.+.-..+|.|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 4555554421 22333345689999998654211100 00001111 1111 1223444444322 45555678999
Q ss_pred EEeecCCCCCCCCCCCCCccccc-ceeeccCceEEEEeCC--CeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCC
Q 009248 132 LAFGWNKHGQLGSGSIRNEIEPS-PVRCLVSEVTATACGA--DFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208 (539)
Q Consensus 132 y~wG~n~~gqlG~~~~~~~~~~~-~~~~~~~~i~~ia~G~--~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~ 208 (539)
+.|-.+....... ...+. ........|..|+... ...++....+| .|+.|-......
T Consensus 207 ~vwd~~~~~~~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~-------------- 266 (430)
T 2xyi_A 207 CLWDINATPKEHR-----VIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNT-------------- 266 (430)
T ss_dssp EEEETTSCCBGGG-----EEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCS--------------
T ss_pred EEEeCCCCCCCCc-----eeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCC--------------
Confidence 9997654221100 00000 1111123377777643 23333333577 999886543210
Q ss_pred cccccccccCCceeecccCCCeEEEEEeCCC--e-eEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCC
Q 009248 209 SVKLAYEAQPRPRAIAALAGETIVKVACGTN--H-TVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLP 285 (539)
Q Consensus 209 ~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~--h-s~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~ 285 (539)
..+..........|..|+.... + .+.-..+|.|..|-.....+ |.. .+... ..
T Consensus 267 ---------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~--~~~~h--~~ 322 (430)
T 2xyi_A 267 ---------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLH--SFESH--KD 322 (430)
T ss_dssp ---------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSE--EEECC--SS
T ss_pred ---------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeE--EeecC--CC
Confidence 0111111112234666665432 2 33446789999997654221 100 01100 11
Q ss_pred CceEEEecCC---ceEEEeCCCcEEEecCCCCCCCCc------cceeeeccCC--CCcEEEEEcCCcE--EEE-Ee-CCC
Q 009248 286 PEAVISAGSV---NSSCTAGGGQLYMWGKLKNNGDDW------MYPKPLMDLS--GWNLRCMDSGNMH--HFV-GA-DSS 350 (539)
Q Consensus 286 ~v~~I~~G~~---~s~~lt~~G~vy~wG~n~~~~~~~------~~P~~v~~l~--~~~i~~i~~G~~h--~~~-lt-~G~ 350 (539)
.|..|..... ..+.-..+|.|.+|-......... ..|..+..+. ...|..++..... .++ .. ||.
T Consensus 323 ~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~ 402 (430)
T 2xyi_A 323 EIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSE
T ss_pred CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCC
Confidence 2344544332 234445688899986543111000 0122333232 2247777655432 333 33 788
Q ss_pred EEEEeCC
Q 009248 351 CISWGHA 357 (539)
Q Consensus 351 vy~wG~n 357 (539)
|.+|-..
T Consensus 403 i~iw~~~ 409 (430)
T 2xyi_A 403 MQVWQMA 409 (430)
T ss_dssp EEEEEEC
T ss_pred EEEeEcc
Confidence 8888543
No 92
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=38.91 E-value=2.8e+02 Score=26.95 Aligned_cols=248 Identities=8% Similarity=-0.019 Sum_probs=121.9
Q ss_pred eEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc-eeEEEecCCCEEEeec
Q 009248 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS-HTVVVTEDGNSLAFGW 136 (539)
Q Consensus 58 i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~-ht~~Lt~~G~vy~wG~ 136 (539)
+..++.. ....+.-..||.|..|-....-. ...+.. ....|..++.... ..+.-..||.|..|-.
T Consensus 125 ~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~-----------~~~~~~-h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 125 ITCLQFE--DNYVITGADDKMIRVYDSINKKF-----------LLQLSG-HDGGVWALKYAHGGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTTEE-----------EEEECC-CSSCEEEEEECSTTEEEEEETTSCEEEEET
T ss_pred EEEEEEC--CCEEEEEcCCCcEEEEECCCCcE-----------EEEEeC-CCcCEEEEEEcCCCEEEEEeCCCCEEEEEC
Confidence 4556654 56777778899999997432110 111111 1234777776544 4455578999999964
Q ss_pred CCCCCCCCCCCCCcccccceeeccCceEEEEeC---CCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCccccc
Q 009248 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACG---ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLA 213 (539)
Q Consensus 137 n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G---~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~ 213 (539)
..... ...+......|..++.- ....++....+| .|..|-......+....... ......
T Consensus 191 ~~~~~-----------~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~-~i~vwd~~~~~~~~~~~~~~-----~~~~~~ 253 (464)
T 3v7d_B 191 KKGCC-----------THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN-TLHVWKLPKESSVPDHGEEH-----DYPLVF 253 (464)
T ss_dssp TTTEE-----------EEEECCCSSCEEEEEEEESSSCEEEEEEETTS-CEEEEECCCCCCC------C-----CSSEEE
T ss_pred CCCcE-----------EEEECCCCCccEEEEEecCCCCCEEEEEcCCC-cEEEeeCCCCcccccccccC-----CcceEe
Confidence 32110 00111112335555443 223344443677 89888655422211100000 000000
Q ss_pred ccccCCceeec--ccCCCeEEEEEeCCCeeEEEccCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEE
Q 009248 214 YEAQPRPRAIA--ALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVIS 291 (539)
Q Consensus 214 ~~~~~~p~~i~--~~~~~~I~~Ia~G~~hs~alt~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~ 291 (539)
......+..+. .-....|..++....+.++-..+|.|+.|-.... ..+..+... ...+..++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~--------------~~~~~~~~~--~~~v~~~~ 317 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQM--------------KCLYILSGH--TDRIYSTI 317 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT--------------EEEEEECCC--SSCEEEEE
T ss_pred eccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCC--------------cEEEEecCC--CCCEEEEE
Confidence 00011111111 1122457777777777777888999999964321 111111111 11233444
Q ss_pred ecC--CceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCC
Q 009248 292 AGS--VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQ 358 (539)
Q Consensus 292 ~G~--~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~ 358 (539)
... ...++-..+|.|++|-.... .+..........|..++....+.+... ||.|.+|-...
T Consensus 318 ~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 318 YDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred EcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC
Confidence 332 34555567899999964221 111111112235777777666666656 89999996554
No 93
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=38.90 E-value=1.4e+02 Score=27.85 Aligned_cols=62 Identities=6% Similarity=-0.008 Sum_probs=30.9
Q ss_pred CceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEc----CCcEEEEEeCCCEEEEeCC
Q 009248 295 VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS----GNMHHFVGADSSCISWGHA 357 (539)
Q Consensus 295 ~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~----G~~h~~~lt~G~vy~wG~n 357 (539)
.|++++. ++.||++|-..........-..+..+.......+.. -..|++++.+++||++|-.
T Consensus 102 ~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 167 (318)
T 2woz_A 102 LFGLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGK 167 (318)
T ss_dssp SCEEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCE
T ss_pred ccceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCC
Confidence 4555544 789999986432111111111111222222333321 1357777779999999853
No 94
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=37.48 E-value=2.4e+02 Score=25.67 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~ 133 (539)
..|..++......+.+.-..||.|..|....... ...+.. ....|..|+...+ +.+.-..||.|..
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-----------EKTISG-HKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-----------chhhcc-CCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 3677777765455666667799999997532111 111211 1234666665544 3444467888999
Q ss_pred eec
Q 009248 134 FGW 136 (539)
Q Consensus 134 wG~ 136 (539)
|-.
T Consensus 92 wd~ 94 (312)
T 4ery_A 92 WDV 94 (312)
T ss_dssp EET
T ss_pred EEC
Confidence 854
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=36.85 E-value=2.8e+02 Score=26.31 Aligned_cols=300 Identities=9% Similarity=-0.072 Sum_probs=0.0
Q ss_pred CCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCC
Q 009248 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (539)
Q Consensus 17 ~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~ 96 (539)
+.||++.+-|......-|....-..-............-..+..+...-.....+.+.-++.+..+|.|..+++=.....
T Consensus 23 s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~ 102 (365)
T 4h5i_A 23 LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKG 102 (365)
T ss_dssp EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSC
T ss_pred eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecC
Q ss_pred CcccceEeccCCCCcEEEEEeCCce----------eEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEE
Q 009248 97 QRDRPTIVSELSKYKIKKAGAGRSH----------TVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTAT 166 (539)
Q Consensus 97 ~~~~P~~v~~~~~~~I~~Ia~G~~h----------t~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~i 166 (539)
+.....---......+..+.+...+ ++++.-||++.+.+....-..=.-.................|..|
T Consensus 103 d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v 182 (365)
T 4h5i_A 103 NKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDL 182 (365)
T ss_dssp CCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEE
T ss_pred CCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEE
Q ss_pred EeCCCeeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEc-
Q 009248 167 ACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVD- 245 (539)
Q Consensus 167 a~G~~~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt- 245 (539)
+...+..++++..++ .+..|-.. ................|..|+.......+++
T Consensus 183 ~fspdg~~l~s~s~~-~~~~~~~~------------------------~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 183 HFSTDGKVVAYITGS-SLEVISTV------------------------TGSCIARKTDFDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp EECTTSSEEEEECSS-CEEEEETT------------------------TCCEEEEECCCCTTEEEEEEEEEETTEEEEEE
T ss_pred EEccCCceEEeccce-eEEEEEec------------------------cCcceeeeecCCCCCCEEEEEEcCCCCEEEEE
Q ss_pred ---cCCcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccce
Q 009248 246 ---SKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYP 322 (539)
Q Consensus 246 ---~~G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P 322 (539)
....++.|-++. ......+.+...+......-....++.-..+.+.-..|+.|.+|-. ......
T Consensus 238 s~d~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~-----~~~~~~ 304 (365)
T 4h5i_A 238 SLKKGKGIVLTKISI--------KSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKL-----KDLSMS 304 (365)
T ss_dssp EESSSCCEEEEEEEE--------ETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEET-----TTTEEE
T ss_pred ecCCcceeEEeeccc--------ccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEEC-----CCCcEE
Q ss_pred eeeccCCCCcEEEEEcCCcEEEEEe---CCCEEEE
Q 009248 323 KPLMDLSGWNLRCMDSGNMHHFVGA---DSSCISW 354 (539)
Q Consensus 323 ~~v~~l~~~~i~~i~~G~~h~~~lt---~G~vy~w 354 (539)
..+...-...|..|+...+-.++++ |+.|-+|
T Consensus 305 ~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 305 KIFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
No 96
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=35.78 E-value=2.6e+02 Score=25.68 Aligned_cols=108 Identities=8% Similarity=-0.012 Sum_probs=58.5
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEe--CCc--eeEEEecCCCE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA--GRS--HTVVVTEDGNS 131 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~--G~~--ht~~Lt~~G~v 131 (539)
..|..++......+.+....||.|..|-....- +..+.. ....|..|+. ..+ +.+....||.|
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i 153 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTL 153 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcE
Confidence 467778776545566777789999999754221 111111 1334777765 333 34444678999
Q ss_pred EEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCC
Q 009248 132 LAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 132 y~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n 190 (539)
+.|-...... .........+..+..-....++.+ .++ .++.|-..
T Consensus 154 ~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~i~~~~~~ 198 (368)
T 3mmy_A 154 KFWDTRSSNP------------MMVLQLPERCYCADVIYPMAVVAT-AER-GLIVYQLE 198 (368)
T ss_dssp EEECSSCSSC------------SEEEECSSCEEEEEEETTEEEEEE-GGG-CEEEEECS
T ss_pred EEEECCCCcE------------EEEEecCCCceEEEecCCeeEEEe-CCC-cEEEEEec
Confidence 9995432111 111111223444544455555555 566 77777544
No 97
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=35.28 E-value=3e+02 Score=26.20 Aligned_cols=156 Identities=11% Similarity=0.071 Sum_probs=76.1
Q ss_pred EEeCCceeEEE---ecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeCC--CeeEEEEccCCceEEecCC
Q 009248 115 AGAGRSHTVVV---TEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA--DFTVWLSSVEGASILNAGL 189 (539)
Q Consensus 115 Ia~G~~ht~~L---t~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~--~~s~~lt~~~G~~vy~wG~ 189 (539)
+++...+.+++ ..+|.|+.|-....+.+... ...+......|..++... ...++....+| .|..|-.
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~-------~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg-~v~vw~~ 111 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN-------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDC-TVMVWEI 111 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT-------CCCBCCCSSCEEEEEECTTCTTEEEEEETTS-EEEEEEC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC-------CceEecCCCCEEEEEeCCCCCCEEEEEeCCC-eEEEEEc
Confidence 55556665555 45799999976554432110 001111233477777654 23334333677 9999965
Q ss_pred CCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCC---eeEEEccCCcEEEEecCCCCCCCCCCC
Q 009248 190 PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN---HTVAVDSKGYVYTWGFGGYGRLGHREQ 266 (539)
Q Consensus 190 n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~---hs~alt~~G~vy~wG~n~~GqLG~~~~ 266 (539)
...+... ....+..........|..|+.... ..+.-..+|.|+.|-....
T Consensus 112 ~~~~~~~-------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-------- 164 (402)
T 2aq5_A 112 PDGGLVL-------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-------- 164 (402)
T ss_dssp CTTCCSS-------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------
T ss_pred cCCCCcc-------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------
Confidence 5422110 000111111112245777766544 3444567899999964321
Q ss_pred CCccccEEecccccCCCCCCceEEEec--CCceEEEeCCCcEEEecC
Q 009248 267 KDEWVPRRVDVFQRNNVLPPEAVISAG--SVNSSCTAGGGQLYMWGK 311 (539)
Q Consensus 267 ~~~~~p~~v~~~~~~~~~~~v~~I~~G--~~~s~~lt~~G~vy~wG~ 311 (539)
..+..+........|..++.. ....++...+|.|++|-.
T Consensus 165 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 165 ------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred ------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 111111000011123445443 234445567889999964
No 98
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=34.68 E-value=2.9e+02 Score=25.75 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=37.4
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC--ceeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~--~ht~~Lt~~G~vy~ 133 (539)
..|..++........+.-..||.|..|-....-. ...+.. ....|..++... .+.+.-..|+.|..
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~i 123 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK-----------VHAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCE-----------EEEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCc-----------ceEeec-CCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3677777665455666667899999996432111 111211 122344444332 33344456788888
Q ss_pred eec
Q 009248 134 FGW 136 (539)
Q Consensus 134 wG~ 136 (539)
|-.
T Consensus 124 w~~ 126 (340)
T 1got_B 124 YNL 126 (340)
T ss_dssp EET
T ss_pred EEC
Confidence 754
No 99
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=34.16 E-value=2.6e+02 Score=25.06 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=5.3
Q ss_pred EEEeCCCcEEEe
Q 009248 298 SCTAGGGQLYMW 309 (539)
Q Consensus 298 ~~lt~~G~vy~w 309 (539)
++++.+|.+|+-
T Consensus 212 i~~d~~G~l~v~ 223 (286)
T 1q7f_A 212 VGINSNGEILIA 223 (286)
T ss_dssp EEECTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 344444444443
No 100
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=33.10 E-value=3.9e+02 Score=26.81 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEEe
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAF 134 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~w 134 (539)
.|..++........+....+|.|..|-.+ +++ ...+.. ....|..|+...+ ..+..+.++.|+.|
T Consensus 223 ~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~----------~~~~~~-~~~~v~~v~~~~d~~~l~~~~~d~~i~~w 289 (577)
T 2ymu_A 223 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVNGVAFRPDGQTIASASDDKTVKLW 289 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT--SCE----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCE----------EEEEec-CCCCEEEEEEcCCCCEEEEEeCCCEEEEE
Confidence 56667665434455556778888888532 111 111111 1234666665433 34445678889888
Q ss_pred e
Q 009248 135 G 135 (539)
Q Consensus 135 G 135 (539)
-
T Consensus 290 ~ 290 (577)
T 2ymu_A 290 N 290 (577)
T ss_dssp E
T ss_pred e
Confidence 4
No 101
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=31.08 E-value=3.7e+02 Score=25.91 Aligned_cols=66 Identities=6% Similarity=0.051 Sum_probs=38.2
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCC--CCcEEEEEeC--CceeEEEecCCCEE
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS--KYKIKKAGAG--RSHTVVVTEDGNSL 132 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~--~~~I~~Ia~G--~~ht~~Lt~~G~vy 132 (539)
.|..++........+.-..||.|..|-....- .+..+. ...|..|+.. ..+.+.-..|+.|.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~ 217 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFE--------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSC--------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 56777765444555555678888888643211 111111 2246666654 34555557889999
Q ss_pred Eeec
Q 009248 133 AFGW 136 (539)
Q Consensus 133 ~wG~ 136 (539)
.|-.
T Consensus 218 ~wd~ 221 (410)
T 1vyh_C 218 MWEV 221 (410)
T ss_dssp EEET
T ss_pred EEEC
Confidence 9965
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=30.79 E-value=4.3e+02 Score=26.59 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=48.9
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCC
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGS 146 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~ 146 (539)
..+.++...+|.|+.|-... ..+..........|..|+. .. .+....+|.|..|-.. .+
T Consensus 309 ~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~---~~---- 367 (615)
T 1pgu_A 309 NGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS---SM---- 367 (615)
T ss_dssp TTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT---EE----
T ss_pred CCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch---hh----
Confidence 34555566677777775332 1111111112345888888 66 6666889999999543 00
Q ss_pred CCCcccccceeeccCceEEEEeCCCeeEEEEccCCceEEecCCC
Q 009248 147 IRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (539)
Q Consensus 147 ~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt~~~G~~vy~wG~n 190 (539)
. ......|..++......++....+| .|..|-..
T Consensus 368 --------~-~~~~~~v~~~~~~~~~~l~~~~~d~-~i~~~~~~ 401 (615)
T 1pgu_A 368 --------H-QDHSNLIVSLDNSKAQEYSSISWDD-TLKVNGIT 401 (615)
T ss_dssp --------E-CCCCSCEEEEECCSTTCCEEEETTT-EEEETTEE
T ss_pred --------c-CcccCceEEEEECCCcEEEEEeCCC-CEEEEEcc
Confidence 0 1112336666653233333333666 78877543
No 103
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=30.62 E-value=3.4e+02 Score=25.43 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=41.9
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC---------ceeEEEe
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR---------SHTVVVT 126 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~---------~ht~~Lt 126 (539)
..|..++.. ....+.-..||.|+.|-...... .........+.. ....|..|+... .+.+...
T Consensus 17 ~~i~~~~~~--~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 17 ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCeEEEEec--CCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEc
Confidence 367888865 46666677899999998643210 000111122221 233466665543 3444456
Q ss_pred cCCCEEEeecC
Q 009248 127 EDGNSLAFGWN 137 (539)
Q Consensus 127 ~~G~vy~wG~n 137 (539)
.+|.|+.|-..
T Consensus 89 ~dg~i~iw~~~ 99 (397)
T 1sq9_A 89 FSGDLLFYRIT 99 (397)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCCEEEEEcc
Confidence 78999999643
No 104
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=30.34 E-value=3e+02 Score=24.70 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=33.6
Q ss_pred CcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEecc-CCCCcEEEEEeCCcee--EEEecCCCEEEeec
Q 009248 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSE-LSKYKIKKAGAGRSHT--VVVTEDGNSLAFGW 136 (539)
Q Consensus 67 ~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~-~~~~~I~~Ia~G~~ht--~~Lt~~G~vy~wG~ 136 (539)
....+++..|+.|+.|=... |++ . ..+.. -....|..|+...... +.-..||.|..|-.
T Consensus 35 ~~~~lAvg~D~tV~iWd~~t-g~~---------~-~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASS-GDI---------L-QLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp TTSEEEEEETTEEEEEETTT-CCE---------E-EEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCCEEEEEeCCEEEEEECCC-CCE---------E-EEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeec
Confidence 44577888899999996432 211 0 11111 1123477776655443 33367899999954
No 105
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=27.37 E-value=3.9e+02 Score=25.08 Aligned_cols=50 Identities=6% Similarity=-0.012 Sum_probs=27.1
Q ss_pred EeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCc--EEEE-Ee-CCCEEEEe
Q 009248 300 TAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM--HHFV-GA-DSSCISWG 355 (539)
Q Consensus 300 lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~--h~~~-lt-~G~vy~wG 355 (539)
-..++.|++|-.... .....+. .....|..|+.... ..+| -. |+.|++|-
T Consensus 245 g~~d~~i~~wd~~~~-----~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 245 GDETGNVSLVNIKNP-----DSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp EESSSCEEEEESSCG-----GGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred eecccceeEEECCCC-----cEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 367889999954211 1111121 22335777775422 3344 33 89999994
No 106
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=25.42 E-value=4.4e+02 Score=24.94 Aligned_cols=68 Identities=12% Similarity=-0.022 Sum_probs=38.2
Q ss_pred ceEEEecCC---ceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCCcEEEEEcCCcEEEEEe--CCCEEEEeCCC
Q 009248 287 EAVISAGSV---NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA--DSSCISWGHAQ 358 (539)
Q Consensus 287 v~~I~~G~~---~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~~i~~i~~G~~h~~~lt--~G~vy~wG~n~ 358 (539)
+..++.... ..++-..+|.|++|-...... ....+.......|..+.......++.. |+.|..|-...
T Consensus 293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC----PVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----CSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC----chhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 445554433 455556789999996432111 011222223345666666666666655 89999997554
No 107
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=24.26 E-value=4e+02 Score=24.06 Aligned_cols=69 Identities=12% Similarity=-0.034 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCCc--eeEEEecCCCEEE
Q 009248 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLA 133 (539)
Q Consensus 56 ~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~~--ht~~Lt~~G~vy~ 133 (539)
..|..++........+.-..||.|..|-....-. ...+.. ....|..++.... ..+.-..+|.|+.
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~-----------~~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~i 133 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC-----------LKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRI 133 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcE-----------EEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 3567777654445666667789999996432211 011111 1223555554433 3444467889999
Q ss_pred eec
Q 009248 134 FGW 136 (539)
Q Consensus 134 wG~ 136 (539)
|-.
T Consensus 134 wd~ 136 (312)
T 4ery_A 134 WDV 136 (312)
T ss_dssp EET
T ss_pred EEC
Confidence 854
No 108
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=24.22 E-value=64 Score=26.45 Aligned_cols=15 Identities=53% Similarity=1.083 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCC
Q 009248 504 GDGKGTGRGRGRPTS 518 (539)
Q Consensus 504 ~~~~~~~~~~~~~~~ 518 (539)
.+..++||+||||+-
T Consensus 117 ~~~~~~~~~~~~~~~ 131 (133)
T 1ub1_A 117 PKSPGSGRGRGRPKG 131 (133)
T ss_dssp CCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCC
Confidence 345567778888764
No 109
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=22.65 E-value=3.3e+02 Score=22.48 Aligned_cols=67 Identities=4% Similarity=-0.091 Sum_probs=40.4
Q ss_pred CCcEEEEEeCC-ceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccCceEEEEeC-CCeeEEEEccCCceEEe
Q 009248 109 KYKIKKAGAGR-SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACG-ADFTVWLSSVEGASILN 186 (539)
Q Consensus 109 ~~~I~~Ia~G~-~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G-~~~s~~lt~~~G~~vy~ 186 (539)
.....++-|-. .+-+-+..||.|-.-.... ....-..+......++.|-|- ..+.+++. .+| .||.
T Consensus 29 ~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~~G~V~L~g~~sg~yL~mn-~~G-~l~G 96 (142)
T 3p6j_A 29 GNGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEGNGEVLLKSTETGQYLRIN-PDG-TVDG 96 (142)
T ss_dssp STTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEETTEEEEEETTTTEEEEEC-TTS-BEEE
T ss_pred cCcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEccCCEEEEEEecCCEEEeEC-CCC-CEee
Confidence 44688888876 5777788999998653321 111111122222347777775 45666776 788 9996
Q ss_pred c
Q 009248 187 A 187 (539)
Q Consensus 187 w 187 (539)
-
T Consensus 97 s 97 (142)
T 3p6j_A 97 T 97 (142)
T ss_dssp E
T ss_pred c
Confidence 4
No 110
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=22.24 E-value=75 Score=17.48 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.2
Q ss_pred CCCCCC
Q 009248 513 RGRPTS 518 (539)
Q Consensus 513 ~~~~~~ 518 (539)
|+|++|
T Consensus 6 rrrkrk 11 (28)
T 3ukx_C 6 RRRKRK 11 (28)
T ss_dssp CCCCCC
T ss_pred HHHHhh
Confidence 333333
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=21.15 E-value=5.3e+02 Score=24.36 Aligned_cols=108 Identities=12% Similarity=0.073 Sum_probs=56.3
Q ss_pred CcEEEEE---ecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeCC---ceeEEEecCCCEEEeecCCCC
Q 009248 67 SCHCVAV---DVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR---SHTVVVTEDGNSLAFGWNKHG 140 (539)
Q Consensus 67 ~~h~~~l---t~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G~---~ht~~Lt~~G~vy~wG~n~~g 140 (539)
..+..++ ..+|.|++|-....+.+.. ..+. +.. ....|..|+... ...+.-..||.|..|-.....
T Consensus 44 ~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~~-~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 44 PKFMALICEASGGGAFLVLPLGKTGRVDK------NVPL-VCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSEEEEEBCCSSSCCEEEEETTCCEECCT------TCCC-BCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCeEEEEEEEcCCCEEEEEECccCCCCCC------CCce-Eec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4444444 4489999998765554311 1111 111 123477777643 344445678999999654432
Q ss_pred CCCCCCCCCcccccceee---ccCceEEEEeCCCe--eEEEEccCCceEEecCCC
Q 009248 141 QLGSGSIRNEIEPSPVRC---LVSEVTATACGADF--TVWLSSVEGASILNAGLP 190 (539)
Q Consensus 141 qlG~~~~~~~~~~~~~~~---~~~~i~~ia~G~~~--s~~lt~~~G~~vy~wG~n 190 (539)
.... ...++.. ....|..|+..... .++....+| .|+.|-..
T Consensus 116 ~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~ 162 (402)
T 2aq5_A 116 LVLP-------LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVG 162 (402)
T ss_dssp CSSC-------BCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETT
T ss_pred Cccc-------cCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECC
Confidence 1110 0011111 23347777766553 344333677 89888543
No 112
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=21.08 E-value=20 Score=33.85 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=0.0
Q ss_pred chhhhhccccCCCCChhhhhcchhh
Q 009248 457 EEEEEEENSDYESDDSEEQANGQSE 481 (539)
Q Consensus 457 ~~e~e~d~~~~e~~~~~~~~~~~~~ 481 (539)
|++|||++|++|+++-+++++..++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (293)
T 3bbo_G 265 EDEDEEEEEEEEGEEVDDGVEDGTP 289 (293)
T ss_dssp -------------------------
T ss_pred cccccchhhhccccccccccccCCC
No 113
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=20.43 E-value=5.1e+02 Score=23.89 Aligned_cols=112 Identities=9% Similarity=0.017 Sum_probs=51.0
Q ss_pred CeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCCCCcccceEeccCCCCcEEEEEeC-CceeEEEecCCCEEEee
Q 009248 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG-RSHTVVVTEDGNSLAFG 135 (539)
Q Consensus 57 ~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Ia~G-~~ht~~Lt~~G~vy~wG 135 (539)
.|..++........+.-..|+.|..|-...... .......+... ...|..+... ....+.-..|+.|..|-
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-------~~~~~~~~~~h-~~~v~~~~~~~~~~l~s~s~d~~i~~wd 170 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-------NVRVSRELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWD 170 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-------SCEEEEEEECC-SSCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-------cceeEEEecCC-CccEEEEEECCCCcEEEEECCCcEEEEE
Confidence 455565554445555556788888886432110 00001111111 1123333321 22344456788888885
Q ss_pred cCCCCCCCCCCCCCcccccceeeccCceEEEEeCCCeeEEEE-ccCCceEEecC
Q 009248 136 WNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLS-SVEGASILNAG 188 (539)
Q Consensus 136 ~n~~gqlG~~~~~~~~~~~~~~~~~~~i~~ia~G~~~s~~lt-~~~G~~vy~wG 188 (539)
...... ...+......|..++...+..++++ ..+| .|..|-
T Consensus 171 ~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~-~v~~wd 212 (340)
T 1got_B 171 IETGQQ-----------TTTFTGHTGDVMSLSLAPDTRLFVSGACDA-SAKLWD 212 (340)
T ss_dssp TTTTEE-----------EEEECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred CCCCcE-----------EEEEcCCCCceEEEEECCCCCEEEEEeCCC-cEEEEE
Confidence 432110 0001111233666666555444433 2466 888884
Done!