Query 009250
Match_columns 539
No_of_seqs 502 out of 2266
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 22:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 6.9E-46 2.4E-50 373.6 37.6 438 85-538 10-486 (491)
2 3o7q_A L-fucose-proton symport 100.0 1.3E-37 4.4E-42 308.6 29.7 372 84-509 23-427 (438)
3 1pw4_A Glycerol-3-phosphate tr 100.0 5.8E-39 2E-43 319.6 12.0 398 84-514 25-433 (451)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.1E-32 7.1E-37 275.2 24.6 418 89-521 15-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 4.3E-34 1.5E-38 277.1 8.9 358 89-500 2-362 (375)
6 2xut_A Proton/peptide symporte 100.0 7E-29 2.4E-33 251.6 18.9 166 95-263 20-197 (524)
7 2cfq_A Lactose permease; trans 100.0 1.4E-29 4.9E-34 248.3 9.1 383 92-520 12-405 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 1.4E-13 4.6E-18 136.3 12.7 174 89-265 254-434 (451)
9 2cfq_A Lactose permease; trans 99.3 3.1E-12 1E-16 125.0 7.7 144 123-267 258-403 (417)
10 3o7q_A L-fucose-proton symport 99.3 3.8E-11 1.3E-15 118.2 15.5 159 341-511 41-226 (438)
11 2gfp_A EMRD, multidrug resista 99.3 1.6E-11 5.3E-16 118.3 10.9 165 341-520 15-180 (375)
12 4gc0_A D-xylose-proton symport 99.3 1.2E-11 4E-16 123.9 10.3 162 104-268 294-467 (491)
13 4aps_A DI-OR tripeptide H+ sym 99.2 9.9E-11 3.4E-15 117.1 14.4 158 342-513 29-195 (491)
14 2xut_A Proton/peptide symporte 99.2 1.5E-10 5.1E-15 116.8 14.2 155 345-513 31-197 (524)
15 2g9p_A Antimicrobial peptide l 60.9 3.3 0.00011 19.9 0.9 14 143-156 2-15 (26)
16 2dw3_A Intrinsic membrane prot 21.5 1.3E+02 0.0044 20.1 3.8 35 487-521 26-60 (77)
17 4dve_A Biotin transporter BIOY 21.2 1.6E+02 0.0053 24.3 5.3 25 130-154 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=6.9e-46 Score=373.61 Aligned_cols=438 Identities=28% Similarity=0.489 Sum_probs=340.6
Q ss_pred hHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCC------CchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHH
Q 009250 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ 158 (539)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~ 158 (539)
.+.+.++.+++.++.++|.++++..+|.+.++++.+. ++.+.|++.+++.+|..+|++++|+++||+|||++++
T Consensus 10 ~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 10 IFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4555666788889999999999999999999886421 2346789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------hhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHH
Q 009250 159 IDTIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQV 220 (539)
Q Consensus 159 ~~~~~~~~~~~~~~------------------~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 220 (539)
++.+++.+++++++ +++|+++++++|+++|+|.|+..+....+++|+.|+++|++..++.+.
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~ 169 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQF 169 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhh
Confidence 99999999999999 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCC-------cchhHHHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcch
Q 009250 221 GTCLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (539)
Q Consensus 221 ~~~~G~~~~~~~~~~l~~~-------~~~wr~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (539)
+..+|.++++.++...... ..+||+.+.+..+..++..+..+++||+|+|+..+++.+++.+.+++..+++..
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 170 AIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 9999999988877544321 123999999999999999999999999999999999999999988877655444
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCChhH--HHHHHHHHH
Q 009250 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITDGA--LASLLVGVT 371 (539)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 371 (539)
+++..+.....+++++. ......+ ..+...+......+.++.+...+.+|.+.+.+..+..... ......++.
T Consensus 250 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRKT--GGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI 324 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--TTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhh--hhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence 33333222221111110 1111111 2233444455555666667788888999998888776542 223344444
Q ss_pred HhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009250 372 NFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL 451 (539)
Q Consensus 372 ~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (539)
.+.+ .++++++.||+|||+.+..+.....++.+.+....... ......+....++..++..+..++.+.
T Consensus 325 ~~~~-------~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (491)
T 4gc0_A 325 NLTF-------TVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----APGIVALLSMLFYVAAFAMSWGPVCWV 393 (491)
T ss_dssp HHHH-------HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHH-------HHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4544 89999999999999999988888888777766543321 233444555556666777777888889
Q ss_pred ccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHH------HhCcchhhHHHHHHHHHHHHhhheeeeCCCCCCHHH
Q 009250 452 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVE------TFGVAPVYAGFGGVSLLSALFAYYFIVETKGRSLEE 525 (539)
Q Consensus 452 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (539)
+.+|.+|++.|+++.|+.+.++++++++++.+.+.+.+ ..+....|++++++++++.++.++++||||+|++||
T Consensus 394 ~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 394 LLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp HHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 99999999999999999999999999999888776543 356677888999999999998889999999999999
Q ss_pred HHHHhccCCCCCC
Q 009250 526 IEMSLNANSTPGN 538 (539)
Q Consensus 526 ~~~~~~~~~~~~~ 538 (539)
+|+.+|+++++++
T Consensus 474 i~~~f~~~~~~~~ 486 (491)
T 4gc0_A 474 LEALWEPETKKTQ 486 (491)
T ss_dssp HGGGTC-------
T ss_pred HHHHhCCCCcccc
Confidence 9998887665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.3e-37 Score=308.60 Aligned_cols=372 Identities=14% Similarity=0.099 Sum_probs=283.3
Q ss_pred chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (539)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 163 (539)
+++..+..+++..++.+++.....+..|.+.+++|+ +..+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 345567777788888899889999999999999999 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCC-CC
Q 009250 164 LILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DD 239 (539)
Q Consensus 164 ~~~~~~~~---~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~-~~ 239 (539)
.+++.+++ +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+. +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 889999999999999999999999999999999999999999999999999999999999999988 55
Q ss_pred cch------------------------hHHHHHhhHHHHHHHHHHhcc--cccchHHHHhcCChhHHHHHHHHHcCCcch
Q 009250 240 PHW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEI 293 (539)
Q Consensus 240 ~~~------------------------wr~~f~~~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (539)
.+. ||+.|++.+++.++..+..++ .||+++. +.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~------------------ 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NH------------------ 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CC------------------
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cc------------------
Confidence 544 999998877776666554433 3444310 00
Q ss_pred HHHHHHHHHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHH-HHHc-CCChhHHHHHHHHHH
Q 009250 294 NKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLT-FQDV-GITDGALASLLVGVT 371 (539)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 371 (539)
.++++++.+..++++++++..+...+...+... .......+.+.+ +++. +.+.. ..+....+.
T Consensus 240 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~ 304 (438)
T 3o7q_A 240 ----------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAG-FAANYLTGT 304 (438)
T ss_dssp ----------CCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHH-HHHHHHHHH
T ss_pred ----------ccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchh-HHHHHHHHH
Confidence 001112223456677777776665554433333 334455666777 7776 55543 555555555
Q ss_pred HhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhccccccccc
Q 009250 372 NFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGL 451 (539)
Q Consensus 372 ~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (539)
.+.+.++ .++.+++.||++||+.+..+.++..++.+++... ......+...+...+ .....+....
T Consensus 305 ~~~~~~~----~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~-~~~~~~~~~~ 370 (438)
T 3o7q_A 305 MVCFFIG----RFTGTWLISRFAPHKVLAAYALIAMALCLISAFA---------GGHVGLIALTLCSAF-MSIQYPTIFS 370 (438)
T ss_dssp HHHHHHH----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5554433 9999999999999999988888877776665552 122222222222222 2334566777
Q ss_pred ccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Q 009250 452 VIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFG-VAPVYAGFGGVSLLSAL 509 (539)
Q Consensus 452 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~ 509 (539)
+..|.+|++ ++.+.++.. ...++++++|.+.|.+.+..| +...|.+.+++.++..+
T Consensus 371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 778888877 888888877 677999999999999999999 88888876655554444
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=5.8e-39 Score=319.60 Aligned_cols=398 Identities=14% Similarity=0.107 Sum_probs=288.3
Q ss_pred chHHHHHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHH
Q 009250 84 PAFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP 163 (539)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~ 163 (539)
.+++.+..++++.++..++...+.+.+|.+.+++ . +..+.|++.+++.++..++++++|+++||+|||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 3466788888889999999999999999999999 7 888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----hhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250 164 LILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (539)
Q Consensus 164 ~~~~~~~~~~----a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 239 (539)
.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 181 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW 181 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999876654
Q ss_pred cchhHHHHHhhHHHHHHHHHHh-cccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhh
Q 009250 240 PHWWRTMLYIASLPGFILALGM-QFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSEL 318 (539)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (539)
.++||+.|++.+++.++..++. ++++|+|+....+...+. ..+.+. +.+...+++....+...++.
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY----------KNDYPD---DYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT----------CCC----------------CCTHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh----------cccccc---cchhhhhcccccccchHHHH
Confidence 4339999999998887765544 557777653211111100 000000 00000001111111113555
Q ss_pred hccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc--CC
Q 009250 319 LEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE--GR 395 (539)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~--g~ 395 (539)
++++..+...+...+.. ........+.|.++++ .+.+.. ..+.......+...++ .++.+++.||+ +|
T Consensus 249 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~----~~~~g~l~~~~~~~~ 319 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVY----LLRYGILDWSPTYLKEVKHFALD-KSSWAYFLYEYAGIPG----TLLCGWMSDKVFRGN 319 (451)
T ss_dssp SSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHBTTBSCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHTSTTC
T ss_pred HcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCC
Confidence 66555444433333222 2445566677888877 455543 4555555555544333 99999999999 99
Q ss_pred chhhHhhHHHHH-HHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhHHHHHH
Q 009250 396 QKLLIGSYLGMA-ISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGFSFSVH 473 (539)
Q Consensus 396 r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 473 (539)
|+.+..+..+.. ++++++... + ...........+..+++. +..+....+..|.+|++.|+++.|+.+.+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 320 RGATGVFFMTLVTIATIVYWMN---P-----AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC---C-----TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHh---c-----ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 988777666555 443333221 0 111222222222333322 234555678889999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhhee
Q 009250 474 WV-CNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYF 514 (539)
Q Consensus 474 ~~-g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 514 (539)
++ |..++|.+.|.+.+..|+...|++.+++.+++.++.++.
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999999988888887777665443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.1e-32 Score=275.24 Aligned_cols=418 Identities=14% Similarity=0.089 Sum_probs=254.3
Q ss_pred HHHHHHHHhhhhhcccccchhH-HHHHHH-----hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHHHHH
Q 009250 89 VLIASMSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDT 161 (539)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~ 161 (539)
++.+++..++..+......+.+ +.+.++ +|+ +..+.+++.+++.++..++++++|+++|| +|||+++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3344444444444444443333 444555 888 89999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCc--cccchhhhHHHHHHHHHHHHHhcCCCCCC
Q 009250 162 IPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDD 239 (539)
Q Consensus 162 ~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~l~~~ 239 (539)
++.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 93 VLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999988 77788889999999999999999999887
Q ss_pred cchhHHHHHhhHHHHHHHHHHhccc-ccchH----HHHhcCChhHHHHHHHH----------------HcCCcchHHHHH
Q 009250 240 PHWWRTMLYIASLPGFILALGMQFT-VESPR----WLCKGGMLNDAKAVIAN----------------LWGESEINKAIE 298 (539)
Q Consensus 240 ~~~wr~~f~~~~~~~~~~~~~~~~~-~~~p~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~ 298 (539)
.+ ||+.|++.++..++..+..++. ++..+ ....+.+.++..+..+. .....+.+....
T Consensus 173 ~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 251 (491)
T 4aps_A 173 AG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYIN 251 (491)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHH
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh
Confidence 77 9999999887776665554432 21100 00011122222221111 001100000000
Q ss_pred HH--------HHHHHhcCCCCcchhhhhhccCchhHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHc-CCC--hhHHHHHH
Q 009250 299 EF--------QLVIKKDGSDLDSQWSELLEEPHSRVAFIGGALFLLQQFAGINGVLYFSSLTFQDV-GIT--DGALASLL 367 (539)
Q Consensus 299 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 367 (539)
.. ........++.+....+..+........+....... .+.....+.+.+.++. +.+ ........
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (491)
T 4aps_A 252 LLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWA----IEEQGSVVLATFAAERVDSSWFPVSWFQSL 327 (491)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHH----HHGGGGTHHHHHHHHSCCCSSSCSGGGTTH
T ss_pred hhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHHhccCccCHHHHhcc
Confidence 00 000000000000111111111111222222222222 1222233445555543 222 22233344
Q ss_pred HHHHHhcccccccchhhhHHHHhhhcCCchhhH-----hhHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHh
Q 009250 368 VGVTNFAGLRSEKYCALCASYLMDKEGRQKLLI-----GSYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFA 442 (539)
Q Consensus 368 ~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (539)
..+..+.+ .++.+++.||++||+... .+..+.+++.+++.............+........++.....
T Consensus 328 ~~~~~~~~-------~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 400 (491)
T 4aps_A 328 NPLFIMLY-------TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE 400 (491)
T ss_dssp HHHHHHHH-------HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHH
T ss_pred chHHHHHH-------HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHH
Confidence 44444444 888999999999987554 566666666555544321110001112222222222222222
Q ss_pred cccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCC
Q 009250 443 IGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 521 (539)
Q Consensus 443 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (539)
....+....+..|.+|++.|+++.|+.+...++|.+++|.+.+.+.+ .++...|.+.+++.++..++.+++.++.+++
T Consensus 401 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 401 MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23356677889999999999999999999999999999999887654 5677788888888877777766665555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=4.3e-34 Score=277.06 Aligned_cols=358 Identities=12% Similarity=0.076 Sum_probs=258.8
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHH
Q 009250 89 VLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGA 168 (539)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~ 168 (539)
+..+++..++..++...+.+.+|.+.+++|. ++.+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 3456777788888899999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhHHHHH
Q 009250 169 IISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLY 248 (539)
Q Consensus 169 ~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~ 248 (539)
++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++++.+..+ ||+.|+
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~ 158 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYL 158 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988777 999999
Q ss_pred hhHHHHHHHHH-HhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCchhHH
Q 009250 249 IASLPGFILAL-GMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVA 327 (539)
Q Consensus 249 ~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (539)
+.+++.++..+ ..+++||+++. ++++++.+..+++.++++..+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRPV----------------------------------DAPRTRLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCSTT----------------------------------TCCCCCTTTCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcccCCC----------------------------------CcccccHHHHHHHHhcCcchHHH
Confidence 99888887776 44556776531 00111223445666666655544
Q ss_pred HHHHHHHHHhhhhhhHHHHHhHHHHHHH-cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHH-
Q 009250 328 FIGGALFLLQQFAGINGVLYFSSLTFQD-VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLG- 405 (539)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~- 405 (539)
.+...+... .......+.|.+.++ .+.+. ...+.......+...+ +.++.+++.||.+++ ...+...
T Consensus 205 ~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~~~~~~~~~----~~~~~~~l~~r~~~~--~~~~~~~~ 273 (375)
T 2gfp_A 205 LLMLIGGLA----GIAAFEACSGVLMGAVLGLSS-MTVSILFILPIPAAFF----GAWFAGRPNKRFSTL--MWQSVICC 273 (375)
T ss_dssp HHHHHHHHH----HHHHHHHHCSCSSHHHHHHHH-HHHHHHHHTHHHHHHH----HHHHHHTTTTHHHHH--HHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH--HHHHHHHH
Confidence 443333222 333444555555544 34332 2444444444444322 388888888888762 2222222
Q ss_pred HHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHH
Q 009250 406 MAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFL 485 (539)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~ 485 (539)
...+...+..... ...+.+.......+...+.+ ...+....+..|..| ++|+++.|+.+...++|..++|.+.+
T Consensus 274 ~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 274 LLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSA 347 (375)
T ss_dssp HHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCT
T ss_pred HHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2222211111000 00011112222222222222 235666788889998 78999999999999999999999999
Q ss_pred HHHHHhCcchhhHHH
Q 009250 486 DLVETFGVAPVYAGF 500 (539)
Q Consensus 486 ~l~~~~g~~~~~~~~ 500 (539)
.+.+..++...+.+.
T Consensus 348 ~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 348 MLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhcCCcccHHHHHH
Confidence 998877776665543
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=7e-29 Score=251.56 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=143.2
Q ss_pred HHhhhhhcccccchhHH-HHHHHhC------CCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh-cchHHHHHHHHHHHH
Q 009250 95 SNFLFGYHIGVMNGPIV-SIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLIL 166 (539)
Q Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~~ 166 (539)
..++..+......+.++ .+.+++| + +..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.++
T Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~ 97 (524)
T 2xut_A 20 SEACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCV 97 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 33444444433444444 5677888 7 888899999999999999999999999999 999999999999999
Q ss_pred HHHHHHhhh-cHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhh---hHHHHHHHHHHHHHhcCCCCCCcch
Q 009250 167 GAIISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDPHW 242 (539)
Q Consensus 167 ~~~~~~~a~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~l~~~~~~ 242 (539)
+.+++++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+. ++.+.++|..++|.+++.+.+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g- 176 (524)
T 2xut_A 98 GHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG- 176 (524)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 999999999 999999999999999999999999999999999999877666 899999999999999999887777
Q ss_pred hHHHHHhhHHHHHHHHHHhcc
Q 009250 243 WRTMLYIASLPGFILALGMQF 263 (539)
Q Consensus 243 wr~~f~~~~~~~~~~~~~~~~ 263 (539)
||+.|++.+++.++..+..++
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887766555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=1.4e-29 Score=248.25 Aligned_cols=383 Identities=12% Similarity=0.014 Sum_probs=235.0
Q ss_pred HHHHHhhhhhcccccchhHHH-HHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-
Q 009250 92 ASMSNFLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI- 169 (539)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~- 169 (539)
+.+..++..+......+.+|. +++++|+ ++.+.|++.+++.+++.++++++|+++||+|||++++++..+++++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~ 89 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAP 89 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 333334444444555667776 4566898 888889999999999999999999999999999999998887765322
Q ss_pred --HHHhhhcH-HHHHHHHHHhhhchhhhhhhHHHHHHhcCCC--CccccchhhhHHHHHHHHHHHHHhcCCCCCCcchhH
Q 009250 170 --ISAQAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (539)
Q Consensus 170 --~~~~a~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~~wr 244 (539)
.+++++.. ..++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++++.+ .+ ||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~ 167 (417)
T 2cfq_A 90 FFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQ 167 (417)
T ss_dssp HHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hh
Confidence 12233222 1244567777777666555555555555443 456777788878888999999999888765 35 99
Q ss_pred HHHHhhHHHHHHHHHHhcccccchHHHHhcCChhHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCCcchhhhhhccCch
Q 009250 245 TMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINKAIEEFQLVIKKDGSDLDSQWSELLEEPHS 324 (539)
Q Consensus 245 ~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (539)
+.|++.++..++..+..++.+|+++. +.+.++ .+ .+++++.....++++++++..
T Consensus 168 ~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~ 222 (417)
T 2cfq_A 168 FVFWLGSGCALILAVLLFFAKTDAPS---SATVAN-----------AV-----------GANHSAFSLKLALELFRQPKL 222 (417)
T ss_dssp HHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSSS-----------SS-----------SSCCCCCCHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCccccc---cccccc-----------cc-----------ccccccccHHHHHHHhcCCch
Confidence 99998887766555555555544310 000000 00 000001111234456666655
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHcCCCh---hHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHh
Q 009250 325 RVAFIGGALFLLQQFAGINGVLYFSSLTFQDVGITD---GALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIG 401 (539)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~ 401 (539)
+...+....... .+.....+.|.++.+..... ....+....+..+... ++.++.++++||+|||+.+..
T Consensus 223 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~g~l~dr~g~~~~l~~ 294 (417)
T 2cfq_A 223 WFLSLYVIGVSC----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNA----SIMFFAPLIINRIGGKNALLL 294 (417)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCHHHHHHH
T ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcHHHHHHH
Confidence 443332222211 12222223455544432211 1122333333333332 228999999999999998887
Q ss_pred hHHHHHHHHHHHHHHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCcccccchhhHH-HHHHHHHHHHH
Q 009250 402 SYLGMAISMLLVVGATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRTRGKIMGFS-FSVHWVCNFLV 480 (539)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~ 480 (539)
+..+.++..+.+... . +.+..+....+...+.. ...+....+..|.+|++.||++.++. +....+|++++
T Consensus 295 ~~~~~~~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g 365 (417)
T 2cfq_A 295 AGTIMSVRIIGSSFA---T-----SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM 365 (417)
T ss_dssp HHHHHHHHHHHHTTC---C-----SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---c-----cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence 777666654444221 0 11222222111222211 12233457888999999999999994 78888999999
Q ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCC
Q 009250 481 GLFFLDLVETFGVAPVYAGFGGVSLLSALFAYYFIVETKG 520 (539)
Q Consensus 481 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (539)
|.+.|.+.+..|+...|.+.+++.+++.++.+...+|+++
T Consensus 366 p~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 366 SVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp THHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred hhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999998888888888888888877766666665444
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.49 E-value=1.4e-13 Score=136.34 Aligned_cols=174 Identities=14% Similarity=0.100 Sum_probs=145.6
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHHHH-hCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhh--cchHHHHHHHHHHH
Q 009250 89 VLIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI 165 (539)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~ 165 (539)
++.+.+..++..+.........|.+.++ +|. +..+.+++.+.+.++..++.++.|++.||+ |||+.+..+..+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 3344444455555555566677777766 788 888899999999999999999999999999 99999988887776
Q ss_pred -HHHHHHHhh--hcHHHHHHHHHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHH-HHHHHHHhcCCCCCCcc
Q 009250 166 -LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPH 241 (539)
Q Consensus 166 -~~~~~~~~a--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~l~~~~~ 241 (539)
++.++..+. .+.+.+.+.-++.|++.+...+....++.|.+|+++|++++++.+....+ |..+++.+.+.+.+..+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666 47888888899999999999999999999999999999999999999999 99999999999988888
Q ss_pred hhHHHHHhhHHHHHHHHHHhcccc
Q 009250 242 WWRTMLYIASLPGFILALGMQFTV 265 (539)
Q Consensus 242 ~wr~~f~~~~~~~~~~~~~~~~~~ 265 (539)
|+..|++.+++.++..++.++.+
T Consensus 412 -~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 412 -WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888887776665543
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.29 E-value=3.1e-12 Score=124.99 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=123.2
Q ss_pred chhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHhhhchhhhhhhHHHHH
Q 009250 123 PILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYI 202 (539)
Q Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~G~~~~~~~~~~~~~i 202 (539)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557888888888899999999999999999999999999888888888888888888888888988877778888999
Q ss_pred HhcCCCCccccchhh-hHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhHHHHHHHHHHhcc-cccc
Q 009250 203 SEVAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGMQF-TVES 267 (539)
Q Consensus 203 ~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~l~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~~~ 267 (539)
.|.+|++.|+.+.++ ++....+|..++|.+++++.+..+ ++..|.+.+++.++..++.++ .+|+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999999999998 488889999999999999887666 899999888887777665444 4544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.29 E-value=3.8e-11 Score=118.17 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=114.1
Q ss_pred hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250 341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 420 (539)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 420 (539)
.........|.+.++.+.+.. ..+.+.+...+...++ .++.|+++||+|||+.+..+.++.+++.++......
T Consensus 41 ~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~i~----~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-- 113 (438)
T 3o7q_A 41 ANNLNDILLPQFQQAFTLTNF-QAGLIQSAFYFGYFII----PIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHTT----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHhHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--
Confidence 445666677888888887765 5666666666665444 999999999999999999999999988887733211
Q ss_pred CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHH-HHhC------
Q 009250 421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLV-ETFG------ 492 (539)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~-~~~g------ 492 (539)
......+....+..+.+.+ ..+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+. +..+
T Consensus 114 -----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 114 -----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred -----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 1122222222233333333 34566788999999999999999999999999999999999988 4444
Q ss_pred -------------------cchhhHHHHHHHHHHHHhh
Q 009250 493 -------------------VAPVYAGFGGVSLLSALFA 511 (539)
Q Consensus 493 -------------------~~~~~~~~~~~~~~~~~~~ 511 (539)
|++.|++.+++.++..++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 6777777666666555443
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.26 E-value=1.6e-11 Score=118.27 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=121.3
Q ss_pred hhHHHHHhHHHHHHHcCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhhcCCchhhHhhHHHHHHHHHHHHHHhcCC
Q 009250 341 GINGVLYFSSLTFQDVGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKEGRQKLLIGSYLGMAISMLLVVGATSLP 420 (539)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 420 (539)
.........|.+.++.+.+.. ..+.+.+...+...++ .++.|+++||+|||+.+..+..+..++.++.....
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~-~~g~~~~~~~~~~~~~----~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--- 86 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREG-AVQSVMGAYLLTYGVS----QLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--- 86 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTH-HHHHHHHHHHHHHHHH----HTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhhhhHHHHHHcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---
Confidence 344445556777777776655 5556666555555444 99999999999999999999998888887776632
Q ss_pred CCccchhhHHHHHHHHHHHHHhcc-cccccccccccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHH
Q 009250 421 LDEDFSHNLSILGTLFYIFTFAIG-AGPVTGLVIPELSSNRTRGKIMGFSFSVHWVCNFLVGLFFLDLVETFGVAPVYAG 499 (539)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~ 499 (539)
....+....+..+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||+..|.+
T Consensus 87 -------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 87 -------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 22222223333333333 3566678889999999999999999999999999999999999888899999988
Q ss_pred HHHHHHHHHHhhheeeeCCCC
Q 009250 500 FGGVSLLSALFAYYFIVETKG 520 (539)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~ 520 (539)
.+++.++..++..+..||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHCcccCC
Confidence 888777776655566666543
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.26 E-value=1.2e-11 Score=123.87 Aligned_cols=162 Identities=16% Similarity=0.109 Sum_probs=115.3
Q ss_pred cccchhHHHHHHHhCCCCCchhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHhh-----hcHH
Q 009250 104 GVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQA-----HSLD 178 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~a-----~~~~ 178 (539)
..+....+.+.+..+. +............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++..
T Consensus 294 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 371 (491)
T 4gc0_A 294 NVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIV 371 (491)
T ss_dssp HHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred hHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHH
Confidence 3444455777777776 66666677777888888999999999999999999999998888877766543 1122
Q ss_pred HHHHH-HHHhhhchhhhhhhHHHHHHhcCCCCccccchhhhHHHHHHHHHHHHHhcCCCCCCcc-----hhHHHHHhhHH
Q 009250 179 EMLWG-RFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRTMLYIASL 252 (539)
Q Consensus 179 ~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~l~~~~~-----~wr~~f~~~~~ 252 (539)
.++.. -+..+.+. ...+....+.+|.+|.+.|+.++++......+|..+++.+...+.+... ++.+.|++.++
T Consensus 372 ~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~ 450 (491)
T 4gc0_A 372 ALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 450 (491)
T ss_dssp HHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 22222 22222222 3456778899999999999999999999999999888877665543211 14567788787
Q ss_pred HHHHHHHHh-cccccch
Q 009250 253 PGFILALGM-QFTVESP 268 (539)
Q Consensus 253 ~~~~~~~~~-~~~~~~p 268 (539)
++++..+.. +++||+.
T Consensus 451 ~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 451 MGVLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHheecCCC
Confidence 777776655 5688873
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.22 E-value=9.9e-11 Score=117.09 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=110.9
Q ss_pred hHHHHHhHHHHHHH------cCCChhHHHHHHHHHHHhcccccccchhhhHHHHhhh-cCCchhhHhhHHHHHHHHHHHH
Q 009250 342 INGVLYFSSLTFQD------VGITDGALASLLVGVTNFAGLRSEKYCALCASYLMDK-EGRQKLLIGSYLGMAISMLLVV 414 (539)
Q Consensus 342 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~ 414 (539)
+.....+.+.++++ .+.+.. ..+.+.+...+...++ .++.|+++|| +|||+.+..+.++..++.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~----~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRA-TAASIMAIYASMVYLS----GTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHH-HHHHHHHHHHHHHHHH----HHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 33344444555544 566544 5566666666655444 9999999999 8999999999988888877765
Q ss_pred HHhcCCCCccchhhHHHHHHHHHHHHHhcccccccccccccccCccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009250 415 GATSLPLDEDFSHNLSILGTLFYIFTFAIGAGPVTGLVIPELSSNRT--RGKIMGFSFSVHWVCNFLVGLFFLDLVETFG 492 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~~~~~~l~~~~g 492 (539)
... +.+...+..++.+.+. ....+...+++.|.+|++. |+.+.++.+...++|..++|.+.+.+.+..|
T Consensus 104 ~~~--------~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 104 LPF--------GASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp SCC--------STTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred Hhh--------hHHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 521 2222222222222222 2234667788999999988 7778888999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHhhhe
Q 009250 493 VAPVYAGFGGVSLLSALFAYY 513 (539)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ 513 (539)
|+..|++.++..+++.++.+.
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887776666555443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.19 E-value=1.5e-10 Score=116.81 Aligned_cols=155 Identities=10% Similarity=0.105 Sum_probs=107.7
Q ss_pred HHHhHHHHH-HHcC------CChhHHHHHHHHHHHhcccccccchhhhHHHHhhhc-CCchhhHhhHHHHHHHHHHHHHH
Q 009250 345 VLYFSSLTF-QDVG------ITDGALASLLVGVTNFAGLRSEKYCALCASYLMDKE-GRQKLLIGSYLGMAISMLLVVGA 416 (539)
Q Consensus 345 ~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~ 416 (539)
...+.+.++ ++.+ .+.. ..+.+.++..+...++ .++.|+++||+ |||+.+..+.++..++.+++.+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~~~~s~~-~~g~~~~~~~~~~~~~----~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 31 MRNILTPFLMTALLLSIPEELRGA-VAKDVFHSFVIGVYFF----PLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHSCSSCCSSSTTTT-THHHHHHHHHHHHHHT----HHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccccCHH-HHHHHHHHHHHHHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 344445544 4455 4433 5555555555555444 99999999999 99999999988888887777652
Q ss_pred hcCCCCccchhhHHHHHHHHHHHHHhc-ccccccccccccccCcccccchhhH---HHHHHHHHHHHHHHHHHHHHHHhC
Q 009250 417 TSLPLDEDFSHNLSILGTLFYIFTFAI-GAGPVTGLVIPELSSNRTRGKIMGF---SFSVHWVCNFLVGLFFLDLVETFG 492 (539)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~l~~~~g 492 (539)
. .+. ..+....+..+.+. ...+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+..|
T Consensus 106 ~--------~~~-~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 106 E--------HSV-QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp S--------SCH-HHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred c--------ccH-HHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1 012 22222222333332 3356677889999999999876666 888899999999999999999899
Q ss_pred cchhhHHHHHHHHHHHHhhhe
Q 009250 493 VAPVYAGFGGVSLLSALFAYY 513 (539)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~ 513 (539)
|+..|++.+++.++..++.++
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999998888777666555443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=60.94 E-value=3.3 Score=19.94 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred hhhhhhhhhcchHH
Q 009250 143 SSGSLADKLGCRRT 156 (539)
Q Consensus 143 ~~g~l~dr~Grr~~ 156 (539)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=21.52 E-value=1.3e+02 Score=20.10 Aligned_cols=35 Identities=6% Similarity=-0.258 Sum_probs=18.9
Q ss_pred HHHHhCcchhhHHHHHHHHHHHHhhheeeeCCCCC
Q 009250 487 LVETFGVAPVYAGFGGVSLLSALFAYYFIVETKGR 521 (539)
Q Consensus 487 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (539)
+..-.||...+.+...+.+++.-++-.++||+.+.
T Consensus 26 MlkGAg~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 26 MMKGAGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 33334555555555555555555555677776543
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=21.20 E-value=1.6e+02 Score=24.33 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhcch
Q 009250 130 VSIFIAGAFVGSISSGSLADKLGCR 154 (539)
Q Consensus 130 ~s~~~~~~~~~~~~~g~l~dr~Grr 154 (539)
+.-|.+|+.++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4578888899999999999987643
Done!