Query 009251
Match_columns 539
No_of_seqs 389 out of 2030
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 22:16:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1855 Predicted RNA-binding 100.0 2.4E-68 5.2E-73 548.6 29.2 373 149-537 84-479 (484)
2 cd08032 LARP_7 La RNA-binding 99.9 3.8E-27 8.3E-32 197.8 5.2 80 195-274 3-82 (82)
3 cd08033 LARP_6 La RNA-binding 99.9 6.1E-27 1.3E-31 194.6 4.0 77 198-274 1-77 (77)
4 cd08035 LARP_4 La RNA-binding 99.9 1.8E-26 4E-31 189.9 3.9 74 199-274 2-75 (75)
5 cd08036 LARP_5 La RNA-binding 99.9 4.3E-26 9.3E-31 186.6 5.1 74 199-274 2-75 (75)
6 cd08029 LA_like_fungal La-moti 99.9 6.6E-26 1.4E-30 188.2 4.1 75 199-274 2-76 (76)
7 smart00715 LA Domain in the RN 99.9 9.9E-26 2.1E-30 189.0 4.2 80 195-275 1-80 (80)
8 cd08028 LARP_3 La RNA-binding 99.9 1.4E-25 3E-30 188.6 4.6 79 195-274 2-82 (82)
9 cd08030 LA_like_plant La-motif 99.9 2.3E-25 4.9E-30 189.9 4.6 77 198-274 2-90 (90)
10 cd08031 LARP_4_5_like La RNA-b 99.9 6.3E-25 1.4E-29 181.7 3.7 74 199-274 2-75 (75)
11 KOG2591 c-Mpl binding protein, 99.9 1.1E-23 2.4E-28 223.6 9.7 151 190-376 89-241 (684)
12 cd08037 LARP_1 La RNA-binding 99.9 2.7E-24 6E-29 176.4 3.8 72 199-274 2-73 (73)
13 cd08038 LARP_2 La RNA-binding 99.9 5.1E-24 1.1E-28 174.9 4.3 69 199-269 2-70 (73)
14 cd08034 LARP_1_2 La RNA-bindin 99.9 7.9E-24 1.7E-28 174.2 4.4 72 199-274 2-73 (73)
15 cd07323 LAM LA motif RNA-bindi 99.9 1.4E-23 3.1E-28 174.1 4.4 74 199-274 2-75 (75)
16 KOG4213 RNA-binding protein La 99.8 1.4E-21 3E-26 183.2 7.3 154 194-367 10-170 (205)
17 PF05383 La: La domain; Inter 99.8 1.8E-21 4E-26 155.3 1.5 60 201-260 1-61 (61)
18 TIGR01659 sex-lethal sex-letha 99.7 3.4E-16 7.3E-21 164.5 15.9 113 249-382 158-270 (346)
19 PLN03134 glycine-rich RNA-bind 99.6 2E-15 4.2E-20 140.2 13.1 80 287-383 33-112 (144)
20 TIGR01648 hnRNP-R-Q heterogene 99.6 7.4E-14 1.6E-18 154.8 16.9 75 287-386 232-308 (578)
21 COG5193 LHP1 La protein, small 99.5 1.4E-14 3.1E-19 150.4 3.3 160 189-365 48-244 (438)
22 KOG0121 Nuclear cap-binding pr 99.4 2.7E-13 6E-18 121.9 8.0 98 285-399 33-130 (153)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 5.6E-13 1.2E-17 138.6 10.0 81 288-385 269-349 (352)
24 TIGR01659 sex-lethal sex-letha 99.4 1.4E-12 3E-17 137.3 9.9 79 287-382 106-184 (346)
25 TIGR01628 PABP-1234 polyadenyl 99.4 9.4E-13 2E-17 146.1 8.4 82 286-385 283-364 (562)
26 PF00076 RRM_1: RNA recognitio 99.4 1.4E-12 2.9E-17 103.5 7.0 67 291-375 1-67 (70)
27 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2E-12 4.4E-17 134.4 9.2 79 288-383 3-81 (352)
28 TIGR01645 half-pint poly-U bin 99.3 3.1E-12 6.7E-17 142.5 10.1 80 287-383 203-282 (612)
29 PLN03120 nucleic acid binding 99.3 8.5E-12 1.9E-16 125.4 9.8 75 287-382 3-77 (260)
30 TIGR01628 PABP-1234 polyadenyl 99.3 7.4E-12 1.6E-16 139.0 10.1 78 287-382 177-258 (562)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.9E-11 4.1E-16 133.5 11.4 79 288-383 295-373 (509)
32 KOG0107 Alternative splicing f 99.3 1.3E-11 2.9E-16 116.4 8.1 75 288-384 10-84 (195)
33 KOG0113 U1 small nuclear ribon 99.2 1.9E-10 4.1E-15 116.2 15.3 85 287-388 100-184 (335)
34 KOG0122 Translation initiation 99.2 2.3E-11 4.9E-16 120.0 8.3 79 287-382 188-266 (270)
35 KOG0130 RNA-binding protein RB 99.2 3.2E-11 7E-16 109.6 8.6 86 286-388 70-155 (170)
36 KOG0114 Predicted RNA-binding 99.2 5.6E-11 1.2E-15 103.7 9.0 74 287-380 17-90 (124)
37 KOG0105 Alternative splicing f 99.2 4.3E-11 9.2E-16 113.9 8.6 75 287-383 5-79 (241)
38 TIGR01622 SF-CC1 splicing fact 99.2 6.8E-11 1.5E-15 127.6 11.3 79 288-383 186-264 (457)
39 KOG0117 Heterogeneous nuclear 99.2 5.3E-11 1.2E-15 125.3 9.8 167 193-384 133-330 (506)
40 PF14259 RRM_6: RNA recognitio 99.2 5.9E-11 1.3E-15 95.3 7.3 63 291-371 1-63 (70)
41 COG0724 RNA-binding proteins ( 99.2 2.7E-10 5.8E-15 109.7 12.3 79 288-383 115-193 (306)
42 TIGR01622 SF-CC1 splicing fact 99.2 9.4E-11 2E-15 126.5 10.2 79 285-381 86-164 (457)
43 TIGR01645 half-pint poly-U bin 99.2 5.5E-11 1.2E-15 132.6 8.5 78 287-381 106-183 (612)
44 PLN03121 nucleic acid binding 99.1 1.2E-10 2.6E-15 115.7 9.3 75 287-382 4-78 (243)
45 KOG0148 Apoptosis-promoting RN 99.1 1.7E-10 3.6E-15 115.3 9.9 67 286-375 162-228 (321)
46 TIGR01648 hnRNP-R-Q heterogene 99.1 2E-10 4.4E-15 127.7 10.8 68 287-372 57-124 (578)
47 smart00362 RRM_2 RNA recogniti 99.1 2.3E-10 4.9E-15 89.1 8.1 65 290-373 1-65 (72)
48 KOG0144 RNA-binding protein CU 99.1 7.2E-11 1.6E-15 123.9 5.5 143 211-388 63-209 (510)
49 PLN03213 repressor of silencin 99.1 3E-10 6.5E-15 120.7 9.1 75 286-381 8-84 (759)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.1E-10 6.8E-15 124.3 9.5 73 288-383 2-76 (481)
51 KOG0125 Ataxin 2-binding prote 99.1 1.8E-10 3.8E-15 117.7 6.6 80 287-385 95-174 (376)
52 smart00360 RRM RNA recognition 99.0 6.6E-10 1.4E-14 86.0 7.7 66 293-375 1-66 (71)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 8E-10 1.7E-14 121.1 9.7 74 287-382 274-348 (481)
54 cd00590 RRM RRM (RNA recogniti 99.0 1.7E-09 3.6E-14 84.6 8.7 72 290-379 1-72 (74)
55 KOG0111 Cyclophilin-type pepti 99.0 2.9E-10 6.2E-15 110.7 4.6 86 286-388 8-93 (298)
56 KOG0108 mRNA cleavage and poly 99.0 6.7E-10 1.4E-14 119.6 7.8 80 289-385 19-98 (435)
57 KOG0116 RasGAP SH3 binding pro 99.0 2E-09 4.3E-14 115.4 11.1 79 288-386 288-366 (419)
58 KOG4207 Predicted splicing fac 99.0 1.4E-09 3.1E-14 105.1 8.5 78 289-383 14-91 (256)
59 KOG0117 Heterogeneous nuclear 99.0 3.1E-09 6.7E-14 112.2 11.8 71 286-373 81-151 (506)
60 KOG0149 Predicted RNA-binding 99.0 1.2E-09 2.5E-14 107.6 6.9 67 287-370 11-77 (247)
61 KOG0126 Predicted RNA-binding 98.9 1.1E-10 2.3E-15 111.0 -0.7 81 286-383 33-113 (219)
62 KOG0145 RNA-binding protein EL 98.9 1.6E-09 3.6E-14 107.7 6.4 113 250-383 93-207 (360)
63 KOG0131 Splicing factor 3b, su 98.9 2.1E-09 4.5E-14 102.3 6.4 81 287-384 8-88 (203)
64 KOG0127 Nucleolar protein fibr 98.9 3.2E-09 6.9E-14 114.4 7.7 159 203-385 20-196 (678)
65 PF13893 RRM_5: RNA recognitio 98.9 6.1E-09 1.3E-13 80.7 7.1 55 305-381 1-55 (56)
66 KOG4212 RNA-binding protein hn 98.8 1.5E-08 3.3E-13 106.7 10.7 76 287-380 43-119 (608)
67 KOG0127 Nucleolar protein fibr 98.8 7E-09 1.5E-13 111.8 7.7 80 288-384 292-377 (678)
68 KOG0148 Apoptosis-promoting RN 98.8 7.1E-09 1.5E-13 103.8 7.0 81 289-386 63-143 (321)
69 KOG0123 Polyadenylate-binding 98.8 1.9E-08 4.2E-13 106.9 9.4 78 290-387 78-155 (369)
70 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1E-08 2.2E-13 112.1 7.5 71 285-379 172-254 (509)
71 smart00361 RRM_1 RNA recogniti 98.8 1.8E-08 4E-13 81.9 6.7 62 302-378 2-68 (70)
72 KOG0132 RNA polymerase II C-te 98.8 1.2E-08 2.7E-13 113.5 7.5 82 285-389 418-499 (894)
73 KOG0144 RNA-binding protein CU 98.7 2.2E-08 4.7E-13 105.6 7.2 74 282-372 28-101 (510)
74 KOG0109 RNA-binding protein LA 98.7 1.6E-08 3.5E-13 102.1 5.2 74 287-385 77-150 (346)
75 KOG0153 Predicted RNA-binding 98.7 3.8E-08 8.3E-13 101.5 7.9 80 283-386 223-302 (377)
76 KOG0123 Polyadenylate-binding 98.6 4.5E-08 9.7E-13 104.2 7.1 165 189-383 80-244 (369)
77 KOG0145 RNA-binding protein EL 98.6 6.3E-08 1.4E-12 96.6 7.4 78 289-383 42-119 (360)
78 KOG2590 RNA-binding protein LA 98.6 2.5E-08 5.4E-13 107.4 4.8 64 198-268 301-364 (448)
79 KOG1924 RhoA GTPase effector D 98.6 1.4E-07 3.1E-12 105.1 9.7 15 95-109 587-601 (1102)
80 COG5193 LHP1 La protein, small 98.6 1.1E-08 2.3E-13 107.2 0.7 61 198-260 271-331 (438)
81 KOG0131 Splicing factor 3b, su 98.6 1.1E-07 2.4E-12 90.7 6.5 83 289-388 97-180 (203)
82 KOG0124 Polypyrimidine tract-b 98.5 8.1E-08 1.8E-12 99.4 5.3 75 289-380 114-188 (544)
83 KOG0415 Predicted peptidyl pro 98.5 1.1E-07 2.4E-12 98.2 6.0 79 287-382 238-316 (479)
84 KOG4205 RNA-binding protein mu 98.5 5.5E-08 1.2E-12 101.0 3.0 151 204-388 22-179 (311)
85 KOG4206 Spliceosomal protein s 98.5 3.7E-07 8E-12 89.7 7.7 78 287-384 8-89 (221)
86 KOG0147 Transcriptional coacti 98.4 2.9E-07 6.3E-12 99.7 6.5 79 291-386 281-359 (549)
87 KOG0110 RNA-binding protein (R 98.4 4.1E-07 8.8E-12 101.0 7.6 80 290-383 517-596 (725)
88 KOG4208 Nucleolar RNA-binding 98.4 6.2E-07 1.3E-11 87.1 7.7 82 287-385 48-130 (214)
89 KOG4212 RNA-binding protein hn 98.4 3.9E-07 8.4E-12 96.3 6.7 75 286-382 534-608 (608)
90 KOG4209 Splicing factor RNPS1, 98.4 7.4E-07 1.6E-11 89.2 7.6 86 282-385 95-180 (231)
91 KOG1924 RhoA GTPase effector D 98.4 1.2E-06 2.7E-11 97.9 9.8 23 79-101 584-606 (1102)
92 KOG0109 RNA-binding protein LA 98.3 4.5E-07 9.7E-12 91.9 4.8 68 290-382 4-71 (346)
93 KOG0533 RRM motif-containing p 98.3 1.9E-06 4E-11 86.7 8.4 80 287-384 82-161 (243)
94 KOG0110 RNA-binding protein (R 98.3 1.4E-06 3.1E-11 96.8 6.8 77 288-381 613-689 (725)
95 KOG4661 Hsp27-ERE-TATA-binding 98.2 1.1E-05 2.5E-10 87.6 12.7 79 287-382 404-482 (940)
96 KOG0146 RNA-binding protein ET 98.2 1.8E-06 3.9E-11 86.7 5.4 81 284-381 281-361 (371)
97 KOG4660 Protein Mei2, essentia 98.1 2.4E-06 5.2E-11 93.0 4.1 71 285-377 72-142 (549)
98 KOG0106 Alternative splicing f 98.0 5.2E-06 1.1E-10 82.0 4.6 62 290-376 3-64 (216)
99 KOG4454 RNA binding protein (R 98.0 2.9E-06 6.4E-11 83.1 2.2 78 287-383 8-85 (267)
100 KOG0146 RNA-binding protein ET 98.0 7.5E-06 1.6E-10 82.3 4.8 80 286-383 17-99 (371)
101 KOG0124 Polypyrimidine tract-b 98.0 2.3E-05 5.1E-10 81.6 8.2 76 287-379 209-284 (544)
102 KOG1548 Transcription elongati 97.9 2.4E-05 5.2E-10 81.2 7.9 91 281-382 127-218 (382)
103 PF08777 RRM_3: RNA binding mo 97.9 5.1E-05 1.1E-09 67.2 7.7 59 289-370 2-60 (105)
104 KOG4205 RNA-binding protein mu 97.7 3E-05 6.4E-10 80.8 4.4 62 287-365 5-66 (311)
105 KOG4206 Spliceosomal protein s 97.7 7.9E-05 1.7E-09 73.5 6.5 160 192-373 16-209 (221)
106 KOG1457 RNA binding protein (c 97.6 0.0003 6.5E-09 69.5 9.4 80 288-383 34-116 (284)
107 PF11608 Limkain-b1: Limkain b 97.6 0.00039 8.5E-09 59.2 8.3 67 289-382 3-74 (90)
108 KOG1995 Conserved Zn-finger pr 97.6 0.00027 6E-09 73.8 8.9 92 287-387 65-156 (351)
109 KOG0147 Transcriptional coacti 97.5 4.5E-05 9.8E-10 83.1 2.5 80 283-380 174-253 (549)
110 KOG4211 Splicing factor hnRNP- 97.5 0.00022 4.8E-09 77.1 7.5 59 288-366 10-68 (510)
111 KOG0151 Predicted splicing reg 97.5 0.00013 2.8E-09 81.5 5.6 80 286-379 172-251 (877)
112 KOG4211 Splicing factor hnRNP- 97.5 0.00021 4.6E-09 77.2 6.8 74 288-379 103-176 (510)
113 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.9E-09 55.0 5.6 52 289-364 2-53 (53)
114 KOG1190 Polypyrimidine tract-b 97.4 0.00049 1.1E-08 73.0 7.9 73 288-382 297-370 (492)
115 KOG1457 RNA binding protein (c 97.3 0.00026 5.6E-09 70.0 4.2 62 289-371 211-272 (284)
116 PF04059 RRM_2: RNA recognitio 97.3 0.0012 2.5E-08 57.9 7.8 66 289-371 2-69 (97)
117 KOG0106 Alternative splicing f 97.2 0.00018 4E-09 71.2 2.7 69 286-379 97-165 (216)
118 KOG0226 RNA-binding proteins [ 97.1 0.00092 2E-08 67.2 6.3 75 287-378 189-263 (290)
119 KOG4307 RNA binding protein RB 96.8 0.0028 6.1E-08 71.0 7.0 75 289-381 868-943 (944)
120 KOG2314 Translation initiation 96.7 0.0025 5.5E-08 70.0 6.2 77 288-382 58-141 (698)
121 KOG4210 Nuclear localization s 96.7 0.0029 6.3E-08 65.5 6.0 66 288-371 184-250 (285)
122 COG5175 MOT2 Transcriptional r 96.7 0.0033 7.2E-08 65.4 6.3 81 285-381 111-199 (480)
123 KOG1548 Transcription elongati 96.6 0.0059 1.3E-07 63.8 7.6 136 221-377 171-344 (382)
124 KOG0105 Alternative splicing f 96.5 0.021 4.5E-07 55.4 9.8 151 189-384 10-187 (241)
125 KOG0120 Splicing factor U2AF, 96.2 0.0033 7.1E-08 69.3 3.5 79 288-383 289-367 (500)
126 KOG1190 Polypyrimidine tract-b 96.1 0.0038 8.3E-08 66.4 3.1 61 287-370 27-87 (492)
127 KOG0129 Predicted RNA-binding 95.6 0.021 4.6E-07 62.5 6.3 68 285-367 256-326 (520)
128 KOG0120 Splicing factor U2AF, 95.5 0.032 6.9E-07 61.7 7.1 60 303-376 424-483 (500)
129 KOG4307 RNA binding protein RB 95.4 0.85 1.9E-05 52.0 17.6 75 289-381 435-510 (944)
130 KOG2202 U2 snRNP splicing fact 95.3 0.0078 1.7E-07 60.7 1.7 60 302-379 82-142 (260)
131 PF10309 DUF2414: Protein of u 95.2 0.077 1.7E-06 42.9 6.6 55 288-367 5-62 (62)
132 KOG3671 Actin regulatory prote 95.2 0.13 2.8E-06 56.4 10.3 8 198-205 495-502 (569)
133 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.066 1.4E-06 47.2 6.6 74 287-372 5-78 (100)
134 KOG1456 Heterogeneous nuclear 94.9 0.092 2E-06 55.7 8.1 73 287-381 286-359 (494)
135 KOG3152 TBP-binding protein, a 94.9 0.016 3.5E-07 58.6 2.4 81 288-375 74-156 (278)
136 PF09421 FRQ: Frequency clock 94.8 0.018 3.8E-07 67.5 2.9 54 224-277 471-525 (989)
137 KOG0129 Predicted RNA-binding 94.7 0.14 3.1E-06 56.2 9.3 63 287-366 369-432 (520)
138 PF12901 SUZ-C: SUZ-C motif; 94.6 0.017 3.7E-07 41.1 1.3 15 516-530 20-34 (34)
139 PF08952 DUF1866: Domain of un 94.5 0.11 2.3E-06 48.8 6.8 59 303-387 51-109 (146)
140 KOG0128 RNA-binding protein SA 94.3 0.03 6.6E-07 64.4 3.0 77 288-382 736-812 (881)
141 PF07145 PAM2: Ataxin-2 C-term 94.2 0.028 6E-07 34.5 1.4 16 36-51 2-17 (18)
142 KOG4849 mRNA cleavage factor I 94.1 0.13 2.8E-06 54.1 7.0 75 288-379 80-156 (498)
143 KOG1365 RNA-binding protein Fu 94.0 0.13 2.8E-06 54.8 6.9 59 289-366 162-225 (508)
144 PF15023 DUF4523: Protein of u 93.8 0.27 5.9E-06 46.1 7.7 60 286-369 84-147 (166)
145 KOG2416 Acinus (induces apopto 93.3 0.049 1.1E-06 60.6 2.4 65 287-375 443-508 (718)
146 KOG2068 MOT2 transcription fac 93.1 0.038 8.2E-07 57.8 1.1 80 285-378 74-156 (327)
147 KOG1456 Heterogeneous nuclear 92.7 0.39 8.5E-06 51.1 7.8 74 287-382 119-196 (494)
148 KOG4574 RNA-binding protein (c 92.6 0.072 1.6E-06 61.4 2.5 74 291-387 301-374 (1007)
149 KOG0128 RNA-binding protein SA 92.5 0.011 2.4E-07 67.9 -4.0 66 287-369 666-731 (881)
150 PRK11634 ATP-dependent RNA hel 92.4 0.64 1.4E-05 53.3 10.0 36 347-383 526-561 (629)
151 KOG1365 RNA-binding protein Fu 92.0 0.17 3.8E-06 53.8 4.3 65 289-371 281-348 (508)
152 KOG0112 Large RNA-binding prot 92.0 0.038 8.3E-07 63.9 -0.5 79 286-382 370-448 (975)
153 PF08675 RNA_bind: RNA binding 91.9 0.58 1.3E-05 40.1 6.5 64 290-382 10-73 (87)
154 KOG3973 Uncharacterized conser 91.7 0.2 4.3E-06 52.8 4.3 7 304-310 244-250 (465)
155 PF05918 API5: Apoptosis inhib 91.5 0.055 1.2E-06 60.7 0.0 6 196-201 240-245 (556)
156 KOG4676 Splicing factor, argin 91.1 0.25 5.5E-06 52.7 4.4 76 289-379 8-83 (479)
157 KOG1996 mRNA splicing factor [ 90.5 0.54 1.2E-05 48.7 6.0 58 302-375 300-357 (378)
158 PF07576 BRAP2: BRCA1-associat 90.0 2 4.4E-05 38.5 8.6 64 290-372 15-79 (110)
159 KOG0112 Large RNA-binding prot 89.9 0.4 8.7E-06 55.9 5.0 74 287-383 454-529 (975)
160 KOG0115 RNA-binding protein p5 89.7 0.42 9E-06 48.6 4.3 64 289-370 32-95 (275)
161 PF03467 Smg4_UPF3: Smg-4/UPF3 87.8 0.65 1.4E-05 44.9 4.2 70 287-371 6-79 (176)
162 KOG1923 Rac1 GTPase effector F 87.7 2.2 4.8E-05 49.3 8.8 14 192-205 388-401 (830)
163 KOG2135 Proteins containing th 87.2 0.3 6.4E-06 53.4 1.6 75 286-384 370-445 (526)
164 KOG1923 Rac1 GTPase effector F 86.5 2.8 6.1E-05 48.5 8.8 8 292-299 532-539 (830)
165 KOG1819 FYVE finger-containing 82.2 1.1 2.3E-05 49.4 3.0 10 304-313 741-750 (990)
166 KOG1819 FYVE finger-containing 81.7 0.73 1.6E-05 50.7 1.6 7 192-198 634-640 (990)
167 KOG4676 Splicing factor, argin 81.5 0.34 7.4E-06 51.8 -1.0 63 283-367 147-209 (479)
168 KOG2318 Uncharacterized conser 81.0 4.2 9E-05 45.8 7.0 91 287-381 173-302 (650)
169 KOG2193 IGF-II mRNA-binding pr 80.8 1.4 3.1E-05 47.7 3.3 59 290-371 3-61 (584)
170 KOG0804 Cytoplasmic Zn-finger 80.6 3.6 7.9E-05 45.0 6.3 67 288-373 74-141 (493)
171 PF04847 Calcipressin: Calcipr 77.2 3.5 7.7E-05 40.2 4.6 59 301-382 8-68 (184)
172 PF01885 PTS_2-RNA: RNA 2'-pho 76.7 1.5 3.3E-05 42.7 1.9 52 225-276 26-82 (186)
173 KOG4210 Nuclear localization s 73.3 2 4.3E-05 44.7 1.9 75 287-378 87-161 (285)
174 KOG4285 Mitotic phosphoprotein 73.3 9.5 0.00021 40.0 6.7 62 288-374 197-258 (350)
175 COG5178 PRP8 U5 snRNP spliceos 73.1 2.4 5.3E-05 50.9 2.7 12 252-263 225-236 (2365)
176 KOG2278 RNA:NAD 2'-phosphotran 72.5 2.1 4.6E-05 41.4 1.7 39 224-262 27-65 (207)
177 KOG2253 U1 snRNP complex, subu 72.4 2.3 5.1E-05 48.3 2.3 69 287-381 39-107 (668)
178 PRK00819 RNA 2'-phosphotransfe 71.6 2.6 5.7E-05 40.9 2.2 82 224-313 26-113 (179)
179 KOG1830 Wiskott Aldrich syndro 69.3 32 0.00069 37.7 9.7 14 191-204 449-462 (518)
180 KOG2891 Surface glycoprotein [ 67.8 2 4.3E-05 44.4 0.4 72 289-370 150-245 (445)
181 PRK15319 AIDA autotransporter- 63.1 13 0.00028 47.3 6.1 10 233-242 1808-1817(2039)
182 PF03880 DbpA: DbpA RNA bindin 62.3 33 0.00071 28.1 6.6 57 299-381 12-73 (74)
183 KOG4660 Protein Mei2, essentia 60.8 13 0.00028 41.7 5.1 30 345-375 429-458 (549)
184 PF03276 Gag_spuma: Spumavirus 58.2 43 0.00094 37.8 8.5 9 107-115 258-266 (582)
185 KOG1925 Rac1 GTPase effector F 58.0 12 0.00027 41.6 4.3 12 289-300 520-531 (817)
186 KOG4849 mRNA cleavage factor I 56.9 83 0.0018 33.9 9.9 11 192-202 356-366 (498)
187 PF11767 SET_assoc: Histone ly 56.6 26 0.00057 28.7 5.0 47 299-371 11-57 (66)
188 KOG4483 Uncharacterized conser 53.2 74 0.0016 34.8 8.9 53 289-365 392-445 (528)
189 PF03276 Gag_spuma: Spumavirus 52.5 53 0.0012 37.1 8.0 9 194-202 302-310 (582)
190 PF03468 XS: XS domain; Inter 50.3 30 0.00066 31.3 4.9 48 290-357 10-66 (116)
191 KOG0559 Dihydrolipoamide succi 49.0 63 0.0014 34.9 7.6 47 192-264 259-305 (457)
192 KOG2675 Adenylate cyclase-asso 47.5 22 0.00048 39.0 4.1 15 204-218 335-349 (480)
193 PF00403 HMA: Heavy-metal-asso 46.9 1.1E+02 0.0024 23.4 7.1 54 290-366 1-58 (62)
194 COG0724 RNA-binding proteins ( 46.8 23 0.00049 33.7 3.8 36 286-321 223-258 (306)
195 KOG3423 Transcription initiati 44.6 50 0.0011 31.9 5.5 93 192-313 67-166 (176)
196 PTZ00315 2'-phosphotransferase 44.5 14 0.00031 42.1 2.2 53 224-276 398-456 (582)
197 PRK10590 ATP-dependent RNA hel 40.9 57 0.0012 35.8 6.2 18 193-210 83-100 (456)
198 KOG1785 Tyrosine kinase negati 38.2 84 0.0018 34.4 6.6 19 34-52 502-520 (563)
199 cd04904 ACT_AAAH ACT domain of 36.2 2.3E+02 0.0051 22.9 8.1 53 301-370 13-66 (74)
200 PTZ00070 40S ribosomal protein 35.3 27 0.00059 35.9 2.4 10 521-530 112-121 (257)
201 PF10567 Nab6_mRNP_bdg: RNA-re 35.1 87 0.0019 32.9 6.0 69 286-364 13-81 (309)
202 KOG2135 Proteins containing th 35.1 40 0.00088 37.4 3.8 52 300-375 209-260 (526)
203 PRK14548 50S ribosomal protein 33.5 1.1E+02 0.0025 26.2 5.5 56 292-367 24-81 (84)
204 PF08544 GHMP_kinases_C: GHMP 32.9 1.5E+02 0.0032 23.9 6.1 45 302-368 36-80 (85)
205 COG2608 CopZ Copper chaperone 32.6 1.4E+02 0.0029 24.3 5.7 45 289-356 4-48 (71)
206 KOG1925 Rac1 GTPase effector F 30.2 89 0.0019 35.2 5.4 10 77-86 249-258 (817)
207 PF00398 RrnaAD: Ribosomal RNA 29.8 16 0.00035 37.0 -0.2 111 191-318 12-129 (262)
208 PRK06545 prephenate dehydrogen 29.6 1.3E+02 0.0029 31.9 6.6 61 289-368 291-352 (359)
209 KOG2391 Vacuolar sorting prote 29.5 89 0.0019 33.5 5.0 7 240-246 248-254 (365)
210 COG3254 Uncharacterized conser 27.3 2.1E+02 0.0045 25.7 6.2 43 303-365 27-69 (105)
211 PF07292 NID: Nmi/IFP 35 domai 26.9 39 0.00084 29.3 1.6 25 285-309 49-73 (88)
212 KOG4410 5-formyltetrahydrofola 26.9 94 0.002 32.6 4.6 27 289-315 331-357 (396)
213 cd04908 ACT_Bt0572_1 N-termina 26.9 3E+02 0.0066 21.3 8.2 20 301-320 14-34 (66)
214 KOG4019 Calcineurin-mediated s 25.6 64 0.0014 31.7 3.0 71 290-383 12-88 (193)
215 KOG3172 Small nuclear ribonucl 25.0 51 0.0011 29.5 2.0 8 313-320 15-22 (119)
216 PF02714 DUF221: Domain of unk 24.7 80 0.0017 32.7 3.8 21 350-370 1-21 (325)
217 TIGR03636 L23_arch archaeal ri 24.7 2.2E+02 0.0047 24.0 5.6 56 292-367 17-74 (77)
218 cd04880 ACT_AAAH-PDT-like ACT 22.7 3.9E+02 0.0086 21.2 7.7 53 300-370 11-67 (75)
219 PTZ00372 endonuclease 4-like p 22.2 72 0.0015 35.1 2.9 59 288-369 268-334 (413)
220 KOG3997 Major apurinic/apyrimi 21.5 53 0.0012 33.3 1.6 158 179-372 32-208 (281)
221 KOG2590 RNA-binding protein LA 21.1 28 0.00061 38.5 -0.4 59 200-260 102-163 (448)
222 PRK09752 adhesin; Provisional 20.8 94 0.002 38.5 3.7 6 235-240 1033-1038(1250)
223 KOG0162 Myosin class I heavy c 20.1 2.1E+02 0.0045 34.0 6.0 12 227-238 1093-1104(1106)
No 1
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=100.00 E-value=2.4e-68 Score=548.61 Aligned_cols=373 Identities=37% Similarity=0.561 Sum_probs=277.8
Q ss_pred CCCCCCCCCCCCCcccccc-cccccccccCCcccccCcccC-------CCCCCChHHHHHHhhcceeeccCCCccccHHH
Q 009251 149 HRHQNHHHNNNNSHHQNNQ-YEDQQEGEVPGVKDKKEKKDH-------QHGGLNDESIQKVLNQVEYYFSDLNLATTDHL 220 (539)
Q Consensus 149 ~~h~~~~~~~~~~~~q~~~-~~~q~~~~p~~v~~k~~~~~~-------~~~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL 220 (539)
..++..++.++|+|.++.+ ...+.......+....++++. ++..+++|+..||++||||||||+||.+|+||
T Consensus 84 n~~~~~~~~~~R~~~~~~q~~~v~~pqe~e~~~~p~de~~~~~~~s~dsk~~lsedl~~kIv~QVEyyFSDenL~~d~fL 163 (484)
T KOG1855|consen 84 NSPSLSDKRPVRGHGETKQEGGVEPPQEKEQEVKPHDEQDTKEIDSLDSKLILSEDLAAKIVDQVEYYFSDENLLKDAFL 163 (484)
T ss_pred CCcccccceeccCCcchhhccCCCCccccccccCcchhcchhhcccccccccccHHHHHHHHHHhheeeccccccchHHH
Confidence 4577889999999999888 555555555555555555544 47889999999999999999999999999999
Q ss_pred HHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecccccccCCCCcchhhhhccceeEEeecCCCcc
Q 009251 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDH 300 (539)
Q Consensus 221 ~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~ 300 (539)
++.|++|.+|||+|++|++|+|||+|+.|+.+|+.||+.|.+|+|++|++||||..||++.+.+++++|||+|+|||.|.
T Consensus 164 lkhvrrnkeGyVpv~~vaSFKKvK~LTrd~~~va~ALr~S~kL~vseDgkKVrRisPlp~~~~eel~srtivaenLP~Dh 243 (484)
T KOG1855|consen 164 LKHVRRNKEGYVPVKLVASFKKVKALTRDWKLVADALRKSSKLEVSEDGKKVRRISPLPEFDEEELPSRTIVAENLPLDH 243 (484)
T ss_pred HHHHhcCCCCceeeehhhhHHHHHHHhhhhHHHHHHHhhcceEEEccCCceeeecCCCCCccccccccceEEEecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEE
Q 009251 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 301 t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~ 380 (539)
+.|+|.+||+.||.|++||||.|. .+|.+.|....+..++.+|-||||||+..+.|.||.+.||.+.+|+.||+|+
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPg----aip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~wr~glkvk 319 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPG----AIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNWRMGLKVK 319 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCC----CCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhhhhcchhh
Confidence 999999999999999999999985 3566777666655667789999999999999999999999999999999999
Q ss_pred EeeecCCCCccc---CCCCCCCCCcccccccccccccccCCCCCCCCCCcCccccCCCc-cccCCCcCCCCCCCCCCCCC
Q 009251 381 LMLRRGSKPAQV---KGKKGPEGEWQCEEEDTSTSEQHLNEKQPDDSSQQSDVQSHDHT-VKEHNNEKEGGQRKGRNKGR 456 (539)
Q Consensus 381 l~~~~~~k~~~~---k~r~Gg~~~~~~~e~~~~~s~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~g~~~gG~grGrgrGR 456 (539)
++.++..|-... +.+.|...++....++....++...+.+..+ ++.+..+.. .+++++...-++.+|+.+||
T Consensus 320 Ll~k~a~K~~~~~~~R~~~g~~~d~E~~~~~st~~e~np~~~q~~~----~~~H~~~~~l~~d~Gn~~~~~~~~g~~~Gr 395 (484)
T KOG1855|consen 320 LLGKKAPKIQIAAPVRSRGGSFSDDETVPDDSTKLERNPSDPQPSY----PRLHANENQLDQDRGNQNQEGGPWGFFKGR 395 (484)
T ss_pred hhhccCcccccccccccccccccCcccCcccccccccCCCCcCCCc----cccccccccCCCCCCCcccccCCCCccccc
Confidence 999988874321 2222222222222233333333333333322 223233322 22223333334445545666
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCcccccc
Q 009251 457 GKGRGRNDRGQYHNNSHHNNSHHNSNHNNHHNNRGHHVGTPPSNNMVNNEQ-------PMIGKQPPGPRMPDGTRGFAMG 529 (539)
Q Consensus 457 GrGRGR~~rG~~~~~~~~~~~~~~~~~~~~~~~~g~~~gt~~~~~~~~~~~-------~~~~~~p~gprmpdgtrgf~~g 529 (539)
++|||| ++.+.|.-+++-|.. ..+|+++..|+++++...++.. .+++.++||||||||||||+||
T Consensus 396 ~kG~gR---~~p~an~~~~n~~ss-----~~~Gn~~~~g~ss~~s~ps~sP~~~~k~~~~~~~q~~gPrmPdgtrGfsmG 467 (484)
T KOG1855|consen 396 RKGRGR---STPSANTAQANGHSS-----NGGGNGMVHGISSLSSHPSYSPEVNPKRPRRASNQSPGPRMPDGTRGFSMG 467 (484)
T ss_pred ccccCC---CCcchhhhhccCccC-----CCCCCcccccccccccCCCCCcccccccccccccCCCCCCCCCCcCCcccc
Confidence 666666 433322111111111 1144444445555433333322 5778899999999999999999
Q ss_pred CC----CCCccc
Q 009251 530 RG----KPVAVN 537 (539)
Q Consensus 530 rg----~p~~~~ 537 (539)
|| ||.++.
T Consensus 468 rg~~~~~P~~s~ 479 (484)
T KOG1855|consen 468 RGDFAQKPDTSQ 479 (484)
T ss_pred cccCCCCCcccc
Confidence 99 776553
No 2
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=99.93 E-value=3.8e-27 Score=197.77 Aligned_cols=80 Identities=30% Similarity=0.552 Sum_probs=78.1
Q ss_pred hHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 195 ~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
.+++++|++||||||||+||++|.||+++|.++.||||||++|++|+|||+|+.|.++|++||+.|+.|+|++|+++|||
T Consensus 3 ~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VRR 82 (82)
T cd08032 3 KQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSFNKMKKLTTDGKLIARALKNSSVVELNLEGTRIRR 82 (82)
T ss_pred HHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcchHHHHHcCCHHHHHHHHhcCCEEEEcCCCCccCC
Confidence 57899999999999999999999999999998999999999999999999999999999999999999999999999997
No 3
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.93 E-value=6.1e-27 Score=194.57 Aligned_cols=77 Identities=56% Similarity=0.879 Sum_probs=75.0
Q ss_pred HHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 198 ~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
+++|++||||||||+||++|.||+++|.+++||||||++|++|+|||+|+.|.++|++||+.|+.|+|++|+++|||
T Consensus 1 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F~rmk~l~~d~~~I~~Al~~S~~lev~~d~~~VRR 77 (77)
T cd08033 1 IQKIVKQVEYYFSDENLLKDAFLLKHVRRNKEGYVPIKLIASFKKVKALTRDWRVVAAALRRSSKLVVSEDGKKVRR 77 (77)
T ss_pred ChHHHhHHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhcchHHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=1.8e-26 Score=189.89 Aligned_cols=74 Identities=34% Similarity=0.499 Sum_probs=71.0
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++| |.||||||++|++|+|||+|+.|+++|++||+.|..|+|++||++||.
T Consensus 2 e~i~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpi~~iasF~rik~lt~d~~~I~~AL~~S~~levsedg~kVRp 75 (75)
T cd08035 2 ECLKKQLEFCFSRENLSKDLYLISQM--DSDQFVPIWTVANMEGIKKLTTDMDLILDVLRSSPMVQVDETGEKVRP 75 (75)
T ss_pred hHHHhhHHhhcCHhhcccCHHHHHhh--CcCCCEehHHHhccHHHHHhcCCHHHHHHHHHcCCeEEEcCCCCccCc
Confidence 68999999999999999999999984 689999999999999999999999999999999999999999999983
No 5
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=4.3e-26 Score=186.58 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=70.8
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
+.|++||||||||+||++|.||+++| |.||||||++|++|+|||+|+.|.++|++||++|..|+|+++|++||.
T Consensus 2 e~i~kQvEyYFS~~NL~~D~fLr~~m--d~~g~Vpi~~ia~F~rik~Lt~D~~lI~~aL~~S~~vevse~g~kVRp 75 (75)
T cd08036 2 ELLKKTLEFCLSRENLASDMYLISQM--DSDQYVPIMTVANLDHIKKLSTDVDLIVDVLRSLPLVQVDEKGEKVRP 75 (75)
T ss_pred hhhhcceeeeechhhccccHHHHHHh--ccCCCEehHHHhccHHHHHhcCCHHHHHHHHhhCCeEEECCCCCccCc
Confidence 57999999999999999999999995 679999999999999999999999999999999999999999999973
No 6
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.92 E-value=6.6e-26 Score=188.16 Aligned_cols=75 Identities=40% Similarity=0.650 Sum_probs=72.5
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++|.+++||||||++|++|+|||+|+.+ ++|++||+.|+.|+|++|+++|||
T Consensus 2 ~~I~~QvEfYFSd~NL~~D~fLr~~~~~~~~G~Vpl~~i~~F~rmk~l~~~-~~i~~Al~~S~~lev~~d~~~VRR 76 (76)
T cd08029 2 EEIRKQVEFYFSDSNLPTDKFLWTLTGGSNNGWVPIKTIASFKRMRRFQPL-EAVVEALRESELLEVSEDGENVRR 76 (76)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHhccCCCCcEehHHHhCchHHHHcCCH-HHHHHHHHhCCeEEEeCCCCcccC
Confidence 689999999999999999999999999999999999999999999999865 999999999999999999999997
No 7
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=99.92 E-value=9.9e-26 Score=188.98 Aligned_cols=80 Identities=49% Similarity=0.745 Sum_probs=77.0
Q ss_pred hHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 195 ~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
+++.++|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+|+.|.++|++||+.|..|+|++|+++|||
T Consensus 1 ~~~~~~i~~QvEfYFSd~NL~~D~fLr~~~~~~-~g~Vpl~~i~~F~r~k~l~~d~~~i~~Al~~S~~lel~~d~~~VRR 79 (80)
T smart00715 1 EELKQKIKKQVEYYFSDENLPRDKFLRKKMDKN-DGYVPISTIASFKRVKSLTTDVNLIVEALRSSPKLEVSEDGLKVRR 79 (80)
T ss_pred ChHHHHHHHHHHHHcCHhhhhhCHHHHHHhccC-CCCEEhHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCeeCc
Confidence 467899999999999999999999999999887 9999999999999999999999999999999999999999999998
Q ss_pred C
Q 009251 275 Q 275 (539)
Q Consensus 275 k 275 (539)
.
T Consensus 80 ~ 80 (80)
T smart00715 80 R 80 (80)
T ss_pred C
Confidence 4
No 8
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=99.91 E-value=1.4e-25 Score=188.61 Aligned_cols=79 Identities=38% Similarity=0.668 Sum_probs=75.9
Q ss_pred hHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCc--ceEEeeccccc
Q 009251 195 DESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKKI 272 (539)
Q Consensus 195 ~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~--~LeVsedg~kV 272 (539)
+++..+|++||||||||+||++|.||+++|.++ +|||||++|++|+|||+|+.|.++|++||+.|+ .|+|++|+++|
T Consensus 2 ~~l~~~I~~QvEfYFSd~NL~~D~fLr~~m~~~-~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~~~lev~~d~~~V 80 (82)
T cd08028 2 DDLEKKIIRQIEYYFGDFNLPRDKFLKEQIKED-DGWVPMEVMLKFNRLKSLSSDPEVIAKALKKSKSGLIEVSEDKTKI 80 (82)
T ss_pred hHHHHHHHHHHHhhcCHhhhccCHHHHHHHhcc-CCCEEhHHHhCChhHHHhcCCHHHHHHHHHhCCCCEEEEcCCCCcc
Confidence 578999999999999999999999999998765 999999999999999999999999999999999 99999999999
Q ss_pred cc
Q 009251 273 KR 274 (539)
Q Consensus 273 RR 274 (539)
||
T Consensus 81 RR 82 (82)
T cd08028 81 RR 82 (82)
T ss_pred CC
Confidence 97
No 9
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.91 E-value=2.3e-25 Score=189.92 Aligned_cols=77 Identities=42% Similarity=0.708 Sum_probs=73.6
Q ss_pred HHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhc------------HHHHHHhhhcCcceEE
Q 009251 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS------------HSHLASVLRKSSKLVV 265 (539)
Q Consensus 198 ~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d------------~e~I~~ALr~S~~LeV 265 (539)
.++|++||||||||+||++|+||+++|.+++||||+|++|++|+|||+|+.+ .+.|++||+.|+.|+|
T Consensus 2 ~~~i~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~V~i~~i~~F~rmk~l~~~~~~~~~~~~~~~~~~I~~ALk~S~~lev 81 (90)
T cd08030 2 KEKVLRQVEFYFSDSNLPRDDFLLEEVEEDPDGMVSLALICSFSRMRSLLGLGGGKPEDVPEDTLKAVAEALRTSTLLKV 81 (90)
T ss_pred hHHHHHHHHcccchhhcccCHHHHHHhccCCCCCEehHHHhcChHHHHHhhcccccccccchhHHHHHHHHHccCCEEEE
Confidence 5799999999999999999999999999999999999999999999999853 6899999999999999
Q ss_pred eeccccccc
Q 009251 266 SEDGKKIKR 274 (539)
Q Consensus 266 sedg~kVRR 274 (539)
++|+++|||
T Consensus 82 seD~~~VRR 90 (90)
T cd08030 82 SEDGKRVGR 90 (90)
T ss_pred cCCCCccCC
Confidence 999999998
No 10
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.90 E-value=6.3e-25 Score=181.69 Aligned_cols=74 Identities=38% Similarity=0.624 Sum_probs=70.9
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++| +.||||+|++|++|+|||+|+.|.++|++||+.|+.|+|++|+++||.
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~m--~~dG~Vpl~~i~~F~rmk~lt~d~~~i~~Al~~S~~lev~ed~~~VR~ 75 (75)
T cd08031 2 ELLKRQLEYYFSRENLANDAYLLSQM--DSDQYVPIWTIANFNKIKKLTTDIDLIVEALRESPNVQVDEKGEKVRP 75 (75)
T ss_pred hHHHHHHHHHcCHhhhccCHHHHHHh--CCCCCEEHHHHhCchhHHHHcCCHHHHHHHHHhCCeEEEcCCCCccCc
Confidence 68999999999999999999999985 578999999999999999999999999999999999999999999983
No 11
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-23 Score=223.56 Aligned_cols=151 Identities=29% Similarity=0.432 Sum_probs=132.7
Q ss_pred CCCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecc
Q 009251 190 HGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDG 269 (539)
Q Consensus 190 ~~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg 269 (539)
...++.++++-|++|||||||.+||..|.||+.+ ||.|.||||.+||.|.+|++|++|+++|+++|++|..++|++++
T Consensus 89 ~~Pls~~~kq~lk~qlEy~fSreNlssD~YL~sQ--MDSDqyVPI~tva~~~~i~klttDvdLI~Evlresp~VqvDekg 166 (684)
T KOG2591|consen 89 SPPLSRDLKQLLKKQLEYYFSRENLSSDRYLISQ--MDSDQYVPINTVANFPEIMKLTTDVDLIVEVLRESPNVQVDEKG 166 (684)
T ss_pred CCccchhHHHHHHHHHHHhhccccccchhhhhhh--cccccccchhhhccchhhhhhccchHHHHHHHhcCCCceeccCc
Confidence 3467779999999999999999999999999998 78999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhc--CCCeeEEEEeCCCCCCCCCCCCCccccccCcccccc
Q 009251 270 KKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSA--VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNK 347 (539)
Q Consensus 270 ~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~--~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~K 347 (539)
.|||... +.|+|+++-||+++-+|+|+.||+. |=++.++. |+..
T Consensus 167 ekVrp~~----------kRcIvilREIpettp~e~Vk~lf~~encPk~isce------------------------fa~N 212 (684)
T KOG2591|consen 167 EKVRPNH----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCE------------------------FAHN 212 (684)
T ss_pred cccccCc----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeee------------------------eeec
Confidence 9998755 5689999999999999999999976 44444444 3445
Q ss_pred cEEEEEeccHHHHHHHHHHHcCCCCCCCc
Q 009251 348 LHAFVEYESVELAEKAIAELNDEGNWRSG 376 (539)
Q Consensus 348 G~AFVEFes~E~AekAv~~Ln~~~~~~~g 376 (539)
..|||+|++.+||++|++.|..+.+...|
T Consensus 213 ~nWyITfesd~DAQqAykylreevk~fqg 241 (684)
T KOG2591|consen 213 DNWYITFESDTDAQQAYKYLREEVKTFQG 241 (684)
T ss_pred CceEEEeecchhHHHHHHHHHHHHHhhcC
Confidence 56999999999999999988876544443
No 12
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=2.7e-24 Score=176.44 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=67.4
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++| +.||||||++|++|+|||+|+.|.++|++||+.|+.|||+++ +|||
T Consensus 2 ~~I~~QvEyYFSd~NL~~D~fLr~~m--d~dG~Vpi~~ia~F~rmk~Lt~d~~~I~~Al~~S~~vev~~~--~~r~ 73 (73)
T cd08037 2 DYIKRQIEYYFSVDNLERDFFLRRKM--DEDGFLPVTLIASFHRVQALTTDISLIIKALKDSKVVEIIDM--KIRR 73 (73)
T ss_pred hHHHHHHHHhccHhhhccCHHHHHHh--ccCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEecc--hhcC
Confidence 68999999999999999999999985 689999999999999999999999999999999999999987 4554
No 13
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=5.1e-24 Score=174.88 Aligned_cols=69 Identities=29% Similarity=0.537 Sum_probs=66.0
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDG 269 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg 269 (539)
++|++||||||||+||++|.||+++| +.+|||||++|++|+|||+|+.|.++|++||+.|+.|+|++++
T Consensus 2 e~I~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~ia~F~rmk~lt~d~~~I~~Al~~S~~ve~~~~~ 70 (73)
T cd08038 2 EYIKRQIEYYFSTENLERDFFLRRKM--DLQGFLPISLIAGFYRVQALTTNVDLILEALKDSTEVEIVDQK 70 (73)
T ss_pred hHHHhhHHhhcchhhhccCHHHHHHh--CCCCCEeHHHHhcchHHHHhcCCHHHHHHHHHcCCeEEEeCCc
Confidence 68999999999999999999999985 6799999999999999999999999999999999999999874
No 14
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.89 E-value=7.9e-24 Score=174.20 Aligned_cols=72 Identities=33% Similarity=0.601 Sum_probs=67.8
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++| +.+|||||++|++|+|||+|+.|.++|.+||+.|+.|+|++ .+||+
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fLr~~m--~~~G~Vpl~~i~~F~rmk~l~~d~~~i~~Al~~S~~lev~e--~kvR~ 73 (73)
T cd08034 2 EYIKKQIEYYFSVDNLEKDFFLRRKM--DPEGYLPIALIASFHRVQALTTDVNLILEALKDSTVVELVD--EKVRC 73 (73)
T ss_pred hHHHhhHHhhcCHhhhccCHHHHHHc--CCCCCEeHHHHhccHHHHHHcCCHHHHHHHHHcCCeEEEec--CeecC
Confidence 68999999999999999999999985 68999999999999999999999999999999999999998 45764
No 15
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=99.88 E-value=1.4e-23 Score=174.06 Aligned_cols=74 Identities=43% Similarity=0.723 Sum_probs=71.8
Q ss_pred HHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccccccc
Q 009251 199 QKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKR 274 (539)
Q Consensus 199 ~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRR 274 (539)
++|++||||||||+||++|.||+++| +.+|||||++|++|+|||+|+.|.+.|++||+.|..|+|++++.+|||
T Consensus 2 ~~i~~QvEfYFSd~NL~~D~fL~~~~--~~~g~Vpl~~i~~F~r~k~l~~~~~~i~~Al~~s~~lel~~~~~~Vrr 75 (75)
T cd07323 2 EKIKKQVEYYFSDENLCKDRFLRSLM--DDDGWVPLSLLASFNRVKKLTTDVELILEALRDSSVVEVSEDGTKVRR 75 (75)
T ss_pred hHHHhhhHhccCHhhhCcCHHHHHhc--CCCCCEEHHHHhCchHHHHHcCCHHHHHHHHHhCCeEEEeCCCCccCC
Confidence 68999999999999999999999997 889999999999999999999999999999999999999999999987
No 16
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=99.85 E-value=1.4e-21 Score=183.21 Aligned_cols=154 Identities=27% Similarity=0.347 Sum_probs=129.0
Q ss_pred ChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCc--ceEEeecccc
Q 009251 194 NDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS--KLVVSEDGKK 271 (539)
Q Consensus 194 s~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~--~LeVsedg~k 271 (539)
...+.++|+.||||||+|.||++|+||+.+|-+..+|||||.+++.|+|+..|++|...|++||++|. +++|++|.++
T Consensus 10 ~a~lE~kii~qleyy~Gd~nl~rdkfl~eqi~k~~~gwvpi~i~i~FnRla~lttD~~~Iv~al~ksk~~l~eisedk~k 89 (205)
T KOG4213|consen 10 MAALEAKIIHQLEYYFGDLNLPRDKFLREQIHKLDDGWVPIEIMIKFNRLASLTTDFNVIVEALSKSKAELMEISEDKTK 89 (205)
T ss_pred hhHHHHhhhhhhhhhhcccCchHHHHHHHHhhhhccCCccchhhhhhhhhhhccccHHHHHHHHhhCHHhhhhhhhchhh
Confidence 46778899999999999999999999999998889999999999999999999999999999999985 6899999999
Q ss_pred cccCC--CCcc---hhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCccccc
Q 009251 272 IKRQN--PLTE---SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSN 346 (539)
Q Consensus 272 VRRk~--Pl~e---~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~ 346 (539)
+||.. ||++ ...+.+..|+||.+ +.+...++|..+-+ |.+.+|.+.+-.. .....
T Consensus 90 ~rr~~skplpEvt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~----------------k~~~f 149 (205)
T KOG4213|consen 90 IRRSPSKPLPEVTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGN----------------KAHPF 149 (205)
T ss_pred hhcCcCCCCccccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCC----------------CCCCC
Confidence 99964 6665 34566788999999 66666777777766 8899998753211 10122
Q ss_pred ccEEEEEeccHHHHHHHHHHH
Q 009251 347 KLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 347 KG~AFVEFes~E~AekAv~~L 367 (539)
+|..||+|.+.+.|..+++.-
T Consensus 150 kGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 150 KGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCceEEEeecHHHHHhhhhhh
Confidence 889999999999998877743
No 17
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=99.82 E-value=1.8e-21 Score=155.28 Aligned_cols=60 Identities=40% Similarity=0.678 Sum_probs=55.3
Q ss_pred HhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhh-hcHHHHHHhhhcC
Q 009251 201 VLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAII-SSHSHLASVLRKS 260 (539)
Q Consensus 201 I~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt-~d~e~I~~ALr~S 260 (539)
|++||||||||+||++|+||+++|.+++||||||++|++|+|||+|+ .|.++|.+||++|
T Consensus 1 I~~QvEfYFSd~NL~~D~fL~~~~~~~~~g~Vpi~~i~~F~r~k~l~~~~~~~I~~al~~S 61 (61)
T PF05383_consen 1 IKKQVEFYFSDENLPRDKFLRSQMDSNPDGWVPISTILSFNRMKALTNTDIELIVDALRDS 61 (61)
T ss_dssp HHHHHHHHTSHHHHCC-HHHHHHHCTTTTTBEEHHHHTTSHHHHHH--S-HHHHHHHHHTS
T ss_pred ChhHHHHhcCHHHhCcCHHHHHHHHhcCCCcEeHHHHHchHHHHHHhcCCHHHHHHHHHcC
Confidence 78999999999999999999999999899999999999999999999 8999999999986
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.69 E-value=3.4e-16 Score=164.47 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=78.8
Q ss_pred cHHHHHHhhhcCcceEEeecccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009251 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (539)
Q Consensus 249 d~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~ 328 (539)
+.+.+..||+....++|.....+|....+- .+....++|||.|||.++|+++|+++|++||+|+.|+|++++.++
T Consensus 158 ~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~----~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg- 232 (346)
T TIGR01659 158 SEADSQRAIKNLNGITVRNKRLKVSYARPG----GESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTG- 232 (346)
T ss_pred cHHHHHHHHHHcCCCccCCceeeeeccccc----ccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCC-
Confidence 444455555543334443333333322221 123356789999999999999999999999999999998764322
Q ss_pred CCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009251 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 329 ~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
..|+||||+|++.|+|++||+.||+..+......|.+.
T Consensus 233 ----------------~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 233 ----------------TPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred ----------------ccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 12789999999999999999999998776654444443
No 19
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=2e-15 Score=140.23 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=68.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|++||.|++|+|+.+..++ ..||||||+|++.|+|++||+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kGfaFV~F~~~e~A~~Al~~ 95 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETG-----------------RSRGFGFVNFNDEGAATAAISE 95 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 45689999999999999999999999999999998764322 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+..+-|+|.+..
T Consensus 96 lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 96 MDGKELNGRHIRVNPAN 112 (144)
T ss_pred cCCCEECCEEEEEEeCC
Confidence 99988766666666543
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=7.4e-14 Score=154.79 Aligned_cols=75 Identities=29% Similarity=0.331 Sum_probs=66.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC--CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~--G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+||+.++++++|+++|++| |+|++|+++ ++||||+|++.|+|++|+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------------------------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------------------------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------------------------cCeEEEEeCCHHHHHHHH
Confidence 35799999999999999999999999 999999873 569999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecC
Q 009251 365 AELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~~~ 386 (539)
+.||+..++++-|+|.+.....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCC
Confidence 9999999888888888775443
No 21
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.4e-14 Score=150.35 Aligned_cols=160 Identities=28% Similarity=0.353 Sum_probs=131.5
Q ss_pred CCCCCChHHHHH---------------Hhhcceeecc-----CCCccccHHHHHhhcCC--CCCceecccccchhhHHHh
Q 009251 189 QHGGLNDESIQK---------------VLNQVEYYFS-----DLNLATTDHLIRFILKD--PEGYVPISTVASFKKIKAI 246 (539)
Q Consensus 189 ~~~~ls~e~~~k---------------I~kQVEyYFS-----D~NL~~D~fL~~~i~kd--~eG~Vpi~~i~sFkKmK~L 246 (539)
.+.+++++.+.+ +++|+||||| |.|+.+|+||+....++ .+|||+|.++++|++|+.+
T Consensus 48 ~~eE~~~~sksKk~d~~ps~l~~~~kw~l~qvE~~fS~s~~~d~n~~~dk~~ktta~Kn~~~~kwVpIkt~~tfn~~k~~ 127 (438)
T COG5193 48 PVEELTESSKSKKEDKNPSKLTSNTKWTLKQVEFYFSGSKDTDSNFPKDKFLKTTAPKNKKRDKWVPIKTIATFNRMKNS 127 (438)
T ss_pred chhhccchhhhcccccCccccccCccccccceeEEeeccccccccccchhhhccccccccCCCCceeeeeeeeecccccc
Confidence 344566777777 9999999999 99999999999875443 5999999999999999999
Q ss_pred hhcHHHHHHhhhcC---cceEEeecccccccCCCCcchhhh--hccceeEEeecCCCcccH--------HHHHHHhhc--
Q 009251 247 ISSHSHLASVLRKS---SKLVVSEDGKKIKRQNPLTESDLE--ELQSRIVVAENLPEDHCH--------QNLMKIFSA-- 311 (539)
Q Consensus 247 t~d~e~I~~ALr~S---~~LeVsedg~kVRRk~Pl~e~~~~--e~~~rTVyV~nLP~d~t~--------e~L~e~Fs~-- 311 (539)
...++.|..+|++| .+++++.+|.+++|..++.....+ +...|.+|+.+|..+.+. ++|+..|..
T Consensus 128 gs~~~~v~~a~rks~~~rv~e~Sssgsn~~r~~k~~s~n~~s~~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~ 207 (438)
T COG5193 128 GSPVSAVSGALRKSLDARVLEVSSSGSNKNRTEKLISNNNKSTSQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHY 207 (438)
T ss_pred CCchhhhhhhhhcCcccceeeeccccccccccchhhhhhhhhhhhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcc
Confidence 99999999999999 789999999999998876654433 456689999999976544 499999999
Q ss_pred CCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 312 VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 312 ~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+.+..|+++++- +. ..| +|..|++|...+.|++++.
T Consensus 208 h~~~~~i~~rrd~----------~n-----kn~--~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 208 HAPPSQIRNRRDW----------LN-----KNF--RGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred cCChhhccchhhh----------hh-----ccc--cCcccccccChHHHHHHhc
Confidence 6788888886542 11 112 7789999999999999874
No 22
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.7e-13 Score=121.94 Aligned_cols=98 Identities=21% Similarity=0.173 Sum_probs=80.8
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..+++||||+||..-+++|.|-+||++||.|+.|-|-.++.+ ....|||||||-+.++|+.|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k-----------------ktpCGFCFVeyy~~~dA~~Al 95 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK-----------------KTPCGFCFVEYYSRDDAEDAL 95 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC-----------------cCccceEEEEEecchhHHHHH
Confidence 346789999999999999999999999999999999766432 223899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCCCCcccCCCCCCC
Q 009251 365 AELNDEGNWRSGLRVRLMLRRGSKPAQVKGKKGPE 399 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~~~~k~~~~k~r~Gg~ 399 (539)
+.+|+..++.+.|+|.+..........++++.||.
T Consensus 96 ryisgtrLddr~ir~D~D~GF~eGRQyGRG~sGGq 130 (153)
T KOG0121|consen 96 RYISGTRLDDRPIRIDWDAGFVEGRQYGRGKSGGQ 130 (153)
T ss_pred HHhccCcccccceeeeccccchhhhhhcCCCCCCe
Confidence 99999999999999988765544433356655554
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.41 E-value=5.6e-13 Score=138.60 Aligned_cols=81 Identities=22% Similarity=0.220 Sum_probs=71.4
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.++|||+|||.++++++|+++|++||.|.+|+|+++..++. .||||||+|++.++|.+||+.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~-----------------skG~aFV~F~~~~~A~~Ai~~l 331 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQ-----------------CKGYGFVSMTNYDEAAMAILSL 331 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCC-----------------ccceEEEEECCHHHHHHHHHHh
Confidence 34799999999999999999999999999999998753322 3899999999999999999999
Q ss_pred cCCCCCCCceEEEEeeec
Q 009251 368 NDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 368 n~~~~~~~glrV~l~~~~ 385 (539)
|+..++++.|+|.+...+
T Consensus 332 nG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 332 NGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred CCCEECCeEEEEEEccCC
Confidence 999998888888876543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.37 E-value=1.4e-12 Score=137.27 Aligned_cols=79 Identities=24% Similarity=0.353 Sum_probs=69.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||.|||.++|+++|+++|+.||.|+.|+|+.+..++ .+||||||+|+++|+|++||++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg-----------------~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG-----------------YSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccCcEEEEEEccHHHHHHHHHH
Confidence 56799999999999999999999999999999998764322 1289999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..++.+.|+|.+.
T Consensus 169 LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 169 LNGITVRNKRLKVSYA 184 (346)
T ss_pred cCCCccCCceeeeecc
Confidence 9999988887777654
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.36 E-value=9.4e-13 Score=146.12 Aligned_cols=82 Identities=22% Similarity=0.308 Sum_probs=70.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+||+.++|+++|+++|+.||.|+.|+|+.+.+ + .+||||||+|++.++|++||+
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~-----------g-------~~~g~gfV~f~~~~~A~~A~~ 344 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK-----------G-------VSRGFGFVCFSNPEEANRAVT 344 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCCeEEEEeCCHHHHHHHHH
Confidence 3567899999999999999999999999999999987521 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
+||+..+.++.|.|.++..+
T Consensus 345 ~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 345 EMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HhcCCeeCCceeEEEeccCc
Confidence 99998888888888877543
No 26
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.4e-12 Score=103.54 Aligned_cols=67 Identities=37% Similarity=0.459 Sum_probs=57.5
Q ss_pred EEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCC
Q 009251 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~ 370 (539)
|||+|||.++|+++|+++|+.||.|..+.|.... .+ ..+++|||+|++.++|++|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~-----------~~-------~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS-----------SG-------KSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET-----------TS-------SEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc-----------cc-------cccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999997531 01 12789999999999999999999987
Q ss_pred CCCCC
Q 009251 371 GNWRS 375 (539)
Q Consensus 371 ~~~~~ 375 (539)
.+.+.
T Consensus 63 ~~~~~ 67 (70)
T PF00076_consen 63 KINGR 67 (70)
T ss_dssp EETTE
T ss_pred EECcc
Confidence 65443
No 27
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.35 E-value=2e-12 Score=134.40 Aligned_cols=79 Identities=20% Similarity=0.335 Sum_probs=68.5
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..+|||+|||.++|+++|+++|+.||+|+.|+|++++.++ .++|||||+|.+.++|++||+.|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g-----------------~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG-----------------QSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC-----------------ccceEEEEEECcHHHHHHHHhhc
Confidence 4699999999999999999999999999999998864322 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.+..
T Consensus 66 ~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 66 NGLRLQNKTIKVSYAR 81 (352)
T ss_pred ccEEECCeeEEEEeec
Confidence 9988877777776543
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=3.1e-12 Score=142.45 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=68.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||+.++++++|+++|+.||.|++|+|.++..++ ..||||||+|++.++|++||+.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg-----------------ksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR-----------------GHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC-----------------CcCCeEEEEECCHHHHHHHHHH
Confidence 35799999999999999999999999999999997664321 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|....
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99988777777776544
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=8.5e-12 Score=125.41 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=66.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|+.||+|.+|+|+.++. .+|||||+|++.++|++||.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--------------------~~GfAFVtF~d~eaAe~All- 61 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--------------------RSQIAYVTFKDPQGAETALL- 61 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--------------------CCCEEEEEeCcHHHHHHHHH-
Confidence 357999999999999999999999999999999976531 16899999999999999996
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..++++-|+|...
T Consensus 62 LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 62 LSGATIVDQSVTITPA 77 (260)
T ss_pred hcCCeeCCceEEEEec
Confidence 9999988887777764
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.29 E-value=7.4e-12 Score=138.99 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=64.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|+.||.|.+|.|+.+.. + ..+|||||+|++.++|++|++.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~-----------g-------~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGS-----------G-------RSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----------C-------CcccEEEEEECCHHHHHHHHHH
Confidence 456899999999999999999999999999999976521 1 1388999999999999999999
Q ss_pred HcCCCCC----CCceEEEEe
Q 009251 367 LNDEGNW----RSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~----~~glrV~l~ 382 (539)
|++..++ ++-+.|..+
T Consensus 239 l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred hCCcEecccccceeeEeecc
Confidence 9998876 444444433
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.27 E-value=1.9e-11 Score=133.52 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=69.1
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.++|||+|||.++|+++|+++|+.||.|+.|.|+.+..++ .++|||||+|++.++|++||+.|
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-----------------~~~g~afv~f~~~~~a~~A~~~l 357 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG-----------------LSKGYAFCEYKDPSVTDVAIAAL 357 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHHHc
Confidence 4799999999999999999999999999999998653221 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..++++.|.|.++.
T Consensus 358 ~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 358 NGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEECCeEEEEEECc
Confidence 9999888878777764
No 32
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.3e-11 Score=116.38 Aligned_cols=75 Identities=27% Similarity=0.313 Sum_probs=66.2
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.+.|||+||+.++++.||+.+|..||.|.+|+|.+- .-|||||||++..+|+.|+..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----------------------PPGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----------------------CCCceEEeccCcccHHHHHhhc
Confidence 578999999999999999999999999999999431 1689999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009251 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 n~~~~~~~glrV~l~~~ 384 (539)
++..+++.-++|.+...
T Consensus 68 DG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTG 84 (195)
T ss_pred CCccccCceEEEEeecC
Confidence 99998877677776543
No 33
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.9e-10 Score=116.18 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=74.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.-+||||.-|+.++++.+|++.|++||.|+.|+|++++.+++ +||||||||+++-+...|++.
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgk-----------------skGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGK-----------------SKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCC-----------------ccceEEEEeccHHHHHHHHHh
Confidence 568999999999999999999999999999999999865443 389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCCC
Q 009251 367 LNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~~~k 388 (539)
.++..+.++-|-|.+...+..|
T Consensus 163 adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred ccCceecCcEEEEEeccccccc
Confidence 9999988887777776554443
No 34
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=2.3e-11 Score=119.95 Aligned_cols=79 Identities=32% Similarity=0.379 Sum_probs=68.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+.+||-|.||++++++++|++||..||.|.+|.|.+++.++. .||||||.|++.|+|.+||+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~-----------------~kGFAFVtF~sRddA~rAI~~ 250 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGL-----------------SKGFAFVTFESRDDAARAIAD 250 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCc-----------------ccceEEEEEecHHHHHHHHHH
Confidence 678999999999999999999999999999999988876543 399999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.--.|+|.+.
T Consensus 251 LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 251 LNGYGYDNLILRVEWS 266 (270)
T ss_pred ccCcccceEEEEEEec
Confidence 9988755545565554
No 35
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.22 E-value=3.2e-11 Score=109.56 Aligned_cols=86 Identities=23% Similarity=0.362 Sum_probs=75.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
+...+|||.++.+++|+++|.+.|..||+|++|.+..++.+ +-. ||||+|||++.++|++|++
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRt----------Gy~-------KGYaLvEYet~keAq~A~~ 132 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRT----------GYV-------KGYALVEYETLKEAQAAID 132 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccc----------ccc-------cceeeeehHhHHHHHHHHH
Confidence 44568999999999999999999999999999999877543 222 8999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~~k 388 (539)
.||+..+....+.|.+...+.+.
T Consensus 133 ~~Ng~~ll~q~v~VDw~Fv~gp~ 155 (170)
T KOG0130|consen 133 ALNGAELLGQNVSVDWCFVKGPE 155 (170)
T ss_pred hccchhhhCCceeEEEEEecCCc
Confidence 99999999999999988765543
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=5.6e-11 Score=103.66 Aligned_cols=74 Identities=27% Similarity=0.295 Sum_probs=62.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
-.|.|||+|||+++|.|++-+||++||.|..|||-.. -..+|.|||.|++..+|++|++.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~--------------------k~TrGTAFVVYedi~dAk~A~dh 76 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT--------------------KETRGTAFVVYEDIFDAKKACDH 76 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc--------------------cCcCceEEEEehHhhhHHHHHHH
Confidence 4679999999999999999999999999999999432 12389999999999999999999
Q ss_pred HcCCCCCCCceEEE
Q 009251 367 LNDEGNWRSGLRVR 380 (539)
Q Consensus 367 Ln~~~~~~~glrV~ 380 (539)
|++......=|.|-
T Consensus 77 lsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 77 LSGYNVDNRYLVVL 90 (124)
T ss_pred hcccccCCceEEEE
Confidence 99877655544443
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=4.3e-11 Score=113.85 Aligned_cols=75 Identities=28% Similarity=0.338 Sum_probs=60.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+|+|||+|||.++.+.+|++||.+||.|..|.+..+. ..-.|||||||+.-+|+.||..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--------------------g~ppfafVeFEd~RDAeDAiyg 64 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--------------------GPPPFAFVEFEDPRDAEDAIYG 64 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--------------------CCCCeeEEEecCccchhhhhhc
Confidence 46899999999999999999999999999999984321 1146999999999999999987
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
-++-.+. |.++++.+
T Consensus 65 RdGYdyd--g~rLRVEf 79 (241)
T KOG0105|consen 65 RDGYDYD--GCRLRVEF 79 (241)
T ss_pred ccccccC--cceEEEEe
Confidence 7765543 44555443
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.20 E-value=6.8e-11 Score=127.60 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=68.9
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.++|||+||+.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|.+.++|++|++.|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g-----------------~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG-----------------RSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHHhc
Confidence 5899999999999999999999999999999998654321 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..+.++-|+|.++.
T Consensus 249 ~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCcEECCEEEEEEEcc
Confidence 9988877777777755
No 39
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=5.3e-11 Score=125.34 Aligned_cols=167 Identities=25% Similarity=0.310 Sum_probs=119.6
Q ss_pred CChHHHHHHhhcceee-----------ccCCC-------cccc---HHHHHhhcCCCCCceecccccch-hhHHHhh---
Q 009251 193 LNDESIQKVLNQVEYY-----------FSDLN-------LATT---DHLIRFILKDPEGYVPISTVASF-KKIKAII--- 247 (539)
Q Consensus 193 ls~e~~~kI~kQVEyY-----------FSD~N-------L~~D---~fL~~~i~kd~eG~Vpi~~i~sF-kKmK~Lt--- 247 (539)
-+.+..++.+++|--| .|-.| +++. +-+++.|++-.+|-|.+.+..+- +|+|+-.
T Consensus 133 ~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaF 212 (506)
T KOG0117|consen 133 CTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAF 212 (506)
T ss_pred ecHHHHHHHHHHhhCccccCCCEeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEE
Confidence 4677777777777766 33333 3332 23445577788999998887764 4444421
Q ss_pred ---hcHHHHHHhhhc--CcceEEeecccccccCCCCcchhhhhc-cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 248 ---SSHSHLASVLRK--SSKLVVSEDGKKIKRQNPLTESDLEEL-QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 248 ---~d~e~I~~ALr~--S~~LeVsedg~kVRRk~Pl~e~~~~e~-~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.+....+.|-++ +.++.|......|...+|..+.+.+.+ +-+.|||+||+.++|+|.|+++|++||.|.+|..+
T Consensus 213 veYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~ 292 (506)
T KOG0117|consen 213 VEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP 292 (506)
T ss_pred EEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc
Confidence 123333344333 335777777777777777665544332 33589999999999999999999999999999874
Q ss_pred CCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009251 322 LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 322 ~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
|.||||.|.+.++|.+|++++|+.++.+.-|.|.|+..
T Consensus 293 -------------------------rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP 330 (506)
T KOG0117|consen 293 -------------------------RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKP 330 (506)
T ss_pred -------------------------cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCC
Confidence 34899999999999999999999998888787777643
No 40
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=5.9e-11 Score=95.28 Aligned_cols=63 Identities=32% Similarity=0.433 Sum_probs=52.5
Q ss_pred EEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCC
Q 009251 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~ 370 (539)
|||+|||.++++++|+++|+.||.|..|++...+. ...+++|||+|.+.++|++|++.+++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~------------------~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD------------------GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT------------------SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec------------------cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 79999999999999999999999999999975421 123789999999999999999988744
Q ss_pred C
Q 009251 371 G 371 (539)
Q Consensus 371 ~ 371 (539)
.
T Consensus 63 ~ 63 (70)
T PF14259_consen 63 E 63 (70)
T ss_dssp E
T ss_pred E
Confidence 4
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=2.7e-10 Score=109.67 Aligned_cols=79 Identities=35% Similarity=0.429 Sum_probs=68.4
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.++|||+||+.++++++|.++|+.||.|..|+|..++.+ ...+|||||+|.+.++|.+|++.|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~-----------------~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET-----------------GKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc-----------------CccCceEEEEecCHHHHHHHHHHc
Confidence 589999999999999999999999999999999776422 123899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
++..+.++-|+|....
T Consensus 178 ~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 178 NGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCeECCceeEeeccc
Confidence 9888777777777643
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=9.4e-11 Score=126.54 Aligned_cols=79 Identities=28% Similarity=0.311 Sum_probs=67.3
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...+||||+|||.++++++|+++|++||.|..|+|+.++.++ .+||||||+|.+.++|++||
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~-----------------~skg~afVeF~~~e~A~~Al 148 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR-----------------RSKGVAYVEFYDVESVIKAL 148 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 4567899999999999999999999999999999998764322 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEE
Q 009251 365 AELNDEGNWRSGLRVRL 381 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l 381 (539)
. |++..+.++.|.|..
T Consensus 149 ~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 149 A-LTGQMLLGRPIIVQS 164 (457)
T ss_pred H-hCCCEECCeeeEEee
Confidence 7 898887766666654
No 43
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.16 E-value=5.5e-11 Score=132.58 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=68.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||++++++++|+++|++||.|++|+|+.+..++ .+||||||+|++.++|++||+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg-----------------kskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG-----------------KHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCC-----------------CcCCeEEEEeCcHHHHHHHHHh
Confidence 45799999999999999999999999999999998764322 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 009251 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (539)
||+..++++.|+|..
T Consensus 169 lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 169 MNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCeEEecceeeecc
Confidence 999988877777763
No 44
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.2e-10 Score=115.72 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=64.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
...||||+||+.++|+++|++||+.||+|.+|+|++++. .++||||+|+++++|+.|+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e--------------------t~gfAfVtF~d~~aaetAll- 62 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE--------------------YACTAYVTFKDAYALETAVL- 62 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC--------------------cceEEEEEECCHHHHHHHHh-
Confidence 357999999999999999999999999999999986532 15799999999999999995
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+....|.|...
T Consensus 63 LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 63 LSGATIVDQRVCITRW 78 (243)
T ss_pred cCCCeeCCceEEEEeC
Confidence 9999987776655543
No 45
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.7e-10 Score=115.28 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=61.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+.+||||+||...+|+++|++.|+.||.|..|||..+ ||||||.|++.|+|-+||.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----------------------qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----------------------QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----------------------cceEEEEecchhhHHHHHH
Confidence 46799999999999999999999999999999999533 8999999999999999999
Q ss_pred HHcCCCCCCC
Q 009251 366 ELNDEGNWRS 375 (539)
Q Consensus 366 ~Ln~~~~~~~ 375 (539)
.+|+.++.+.
T Consensus 219 ~mNntei~G~ 228 (321)
T KOG0148|consen 219 QMNNTEIGGQ 228 (321)
T ss_pred HhcCceeCce
Confidence 9999986544
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.12 E-value=2e-10 Score=127.71 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=60.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+++ .++ .+||||||+|.+.|+|++||+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG-----------------~sRGfaFV~F~~~e~A~~Ai~~ 118 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG-----------------QNRGYAFVTFCGKEEAKEAVKL 118 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC-----------------CccceEEEEeCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999876 221 2389999999999999999999
Q ss_pred HcCCCC
Q 009251 367 LNDEGN 372 (539)
Q Consensus 367 Ln~~~~ 372 (539)
||+..+
T Consensus 119 lng~~i 124 (578)
T TIGR01648 119 LNNYEI 124 (578)
T ss_pred cCCCee
Confidence 997654
No 47
>smart00362 RRM_2 RNA recognition motif.
Probab=99.12 E-value=2.3e-10 Score=89.13 Aligned_cols=65 Identities=35% Similarity=0.434 Sum_probs=56.3
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
+|||+|||.+++.++|+++|+.||.|..|++.... ...+++|||+|.+.++|++|++.|++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-------------------~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-------------------GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------------------CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999986532 01268999999999999999999987
Q ss_pred CCCC
Q 009251 370 EGNW 373 (539)
Q Consensus 370 ~~~~ 373 (539)
..+.
T Consensus 62 ~~~~ 65 (72)
T smart00362 62 TKLG 65 (72)
T ss_pred cEEC
Confidence 6543
No 48
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=7.2e-11 Score=123.91 Aligned_cols=143 Identities=18% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecccccccCCCCcchhhhh-ccce
Q 009251 211 DLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEE-LQSR 289 (539)
Q Consensus 211 D~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e~~~~e-~~~r 289 (539)
.+||.||+--.. ...+-|| .|.+.|. ...+..||.+-..|.-----.+||-.+ .+++. ..++
T Consensus 63 einl~kDk~t~~---s~gcCFv------~~~trk~----a~~a~~Alhn~ktlpG~~~pvqvk~Ad----~E~er~~~e~ 125 (510)
T KOG0144|consen 63 EINLIKDKSTGQ---SKGCCFV------KYYTRKE----ADEAINALHNQKTLPGMHHPVQVKYAD----GERERIVEER 125 (510)
T ss_pred EEEeecccccCc---ccceEEE------EeccHHH----HHHHHHHhhcccccCCCCcceeecccc----hhhhccccch
Confidence 678999876542 2344444 4443333 344556666554332111111222221 11111 2467
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
.|||+-|+..+|+.+|+++|++||.|+.|+|+++.. ...||||||.|++.|-|..||+.||+
T Consensus 126 KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~------------------~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 126 KLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD------------------GLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred hhhhhhccccccHHHHHHHHHhhCccchhhheeccc------------------ccccceeEEEEehHHHHHHHHHhhcc
Confidence 899999999999999999999999999999998732 12389999999999999999999998
Q ss_pred CCCCC---CceEEEEeeecCCC
Q 009251 370 EGNWR---SGLRVRLMLRRGSK 388 (539)
Q Consensus 370 ~~~~~---~glrV~l~~~~~~k 388 (539)
....+ ..|.|+++.....|
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ceeeccCCCceEEEecccCCCc
Confidence 75322 35777776654444
No 49
>PLN03213 repressor of silencing 3; Provisional
Probab=99.08 E-value=3e-10 Score=120.70 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=64.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccH--HHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV--ELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~--E~AekA 363 (539)
....+|||+||.+++++++|+++|+.||.|++|.|++. + .||||||||.+. +++++|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-------------------GRGFAFVEMssdddaEeeKA 66 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-------------------GRSFAYIDFSPSSTNSLTKL 66 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-------------------CCceEEEEecCCcHHHHHHH
Confidence 34568999999999999999999999999999999632 1 188999999987 789999
Q ss_pred HHHHcCCCCCCCceEEEE
Q 009251 364 IAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l 381 (539)
|..||+....++.|+|..
T Consensus 67 ISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred HHHhcCCeecCceeEEee
Confidence 999999986666777754
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.07 E-value=3.1e-10 Score=124.27 Aligned_cols=73 Identities=22% Similarity=0.184 Sum_probs=63.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+|+|||+|||.++++++|+++|+.||.|.+|.|+.. |+||||||++.|+|++||+.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----------------------k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----------------------KRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----------------------CCEEEEEeCchHHHHHHHHHh
Confidence 689999999999999999999999999999998632 679999999999999999975
Q ss_pred --cCCCCCCCceEEEEee
Q 009251 368 --NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 --n~~~~~~~glrV~l~~ 383 (539)
++..++++.|+|.+..
T Consensus 59 ~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYST 76 (481)
T ss_pred hcCCceEcCeEEEEEecC
Confidence 5566666667777654
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.8e-10 Score=117.66 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=70.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+.|+|.|||+...+.||+.+|++||.|.+|.|+... -++|||+||+|++.+||++|-++
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE-------------------RGSKGFGFVTmen~~dadRARa~ 155 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE-------------------RGSKGFGFVTMENPADADRARAE 155 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc-------------------CCCCccceEEecChhhHHHHHHH
Confidence 45689999999999999999999999999999998632 23499999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009251 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~ 385 (539)
|++..+.++.|.|+.+..+
T Consensus 156 LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 156 LHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hhcceeeceEEEEeccchh
Confidence 9999988888888776654
No 52
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=6.6e-10 Score=86.04 Aligned_cols=66 Identities=35% Similarity=0.438 Sum_probs=54.8
Q ss_pred eecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCC
Q 009251 293 AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (539)
Q Consensus 293 V~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~ 372 (539)
|+|||.+++.++|+++|+.||.|..|.|.....+ ...+++|||+|.+.++|++|++.|++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~-----------------~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT-----------------GKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC-----------------CCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 5799999999999999999999999999754311 12378999999999999999999987665
Q ss_pred CCC
Q 009251 373 WRS 375 (539)
Q Consensus 373 ~~~ 375 (539)
.++
T Consensus 64 ~~~ 66 (71)
T smart00360 64 DGR 66 (71)
T ss_pred CCc
Confidence 443
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=8e-10 Score=121.08 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=66.1
Q ss_pred cceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+||+. .+|+++|+++|+.||.|.+|+|+++. +|||||+|++.++|++||+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----------------------~g~afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----------------------KETALIEMADPYQAQLALT 331 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 467999999997 69999999999999999999996531 6899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..++++-|+|.+.
T Consensus 332 ~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 332 HLNGVKLFGKPLRVCPS 348 (481)
T ss_pred HhCCCEECCceEEEEEc
Confidence 99999988887877764
No 54
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.01 E-value=1.7e-09 Score=84.64 Aligned_cols=72 Identities=36% Similarity=0.488 Sum_probs=59.6
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
+|+|+|||.+++.++|+++|+.||.|..+.+...... ..+++|||+|.+.++|..|++.+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~------------------~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT------------------KSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC------------------CcceEEEEEECCHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999754210 2278999999999999999999998
Q ss_pred CCCCCCceEE
Q 009251 370 EGNWRSGLRV 379 (539)
Q Consensus 370 ~~~~~~glrV 379 (539)
..+++.-+.|
T Consensus 63 ~~~~~~~~~v 72 (74)
T cd00590 63 KELGGRPLRV 72 (74)
T ss_pred CeECCeEEEE
Confidence 7655443433
No 55
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.9e-10 Score=110.71 Aligned_cols=86 Identities=27% Similarity=0.342 Sum_probs=74.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+.|||||++|-+++++.-|...|-.||.|+.|.| |.|..+.|. +||+||||+..|+|..||+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqi----------PlDyesqkH-------RgFgFVefe~aEDAaaAiD 70 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQI----------PLDYESQKH-------RGFGFVEFEEAEDAAAAID 70 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhccc----------ccchhcccc-------cceeEEEeeccchhHHHhh
Confidence 35689999999999999999999999999999998 444444443 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~~k 388 (539)
.||+.+++++.|+|.++..-..|
T Consensus 71 NMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 71 NMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred cCchhhhcceeEEEeecCCcccc
Confidence 99999999999999987653333
No 56
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.00 E-value=6.7e-10 Score=119.63 Aligned_cols=80 Identities=33% Similarity=0.440 Sum_probs=72.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
++|||+|+|+++++++|.++|++.|.|.++++.+|+.+++ .|||+|+||.+.|+|++|++.||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~-----------------~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK-----------------PKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCC-----------------cCceeeEecCchhhHHHHHHhcC
Confidence 7999999999999999999999999999999999876543 28999999999999999999999
Q ss_pred CCCCCCCceEEEEeeec
Q 009251 369 DEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~ 385 (539)
+.++.++.|+|.+....
T Consensus 82 g~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASNR 98 (435)
T ss_pred CcccCCceEEeeccccc
Confidence 99988888888776543
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.99 E-value=2e-09 Score=115.44 Aligned_cols=79 Identities=24% Similarity=0.297 Sum_probs=61.0
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..+|||+|||.+++.++|+++|+.||.|+..+|.. |+ .. ..+.+|+||+|++.++++.||+.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v------------r~--~~---~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV------------RS--PG---GKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE------------ec--cC---CCcCceEEEEEeecchhhhhhhcC
Confidence 34699999999999999999999999999999843 11 00 111379999999999999999854
Q ss_pred cCCCCCCCceEEEEeeecC
Q 009251 368 NDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 368 n~~~~~~~glrV~l~~~~~ 386 (539)
.+...+.++.+..++.
T Consensus 351 ---p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 351 ---PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ---ccccCCeeEEEEeccc
Confidence 4455667777766544
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.98 E-value=1.4e-09 Score=105.12 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=68.0
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.+|-|.||-+-++.++|..+|++||.|-.|-|-+++.+ -..+|||||-|.+..+|++|++.|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T-----------------r~sRgFaFVrf~~k~daedA~damD 76 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT-----------------RQSRGFAFVRFHDKRDAEDALDAMD 76 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceeccccccc-----------------ccccceeEEEeeecchHHHHHHhhc
Confidence 48999999999999999999999999999999554322 1238999999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 009251 369 DEGNWRSGLRVRLML 383 (539)
Q Consensus 369 ~~~~~~~glrV~l~~ 383 (539)
+..++++.|+|.++.
T Consensus 77 G~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 77 GAVLDGRELRVQMAR 91 (256)
T ss_pred ceeeccceeeehhhh
Confidence 999988888887654
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.98 E-value=3.1e-09 Score=112.24 Aligned_cols=71 Identities=28% Similarity=0.401 Sum_probs=63.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-..+-|||+.||.|+.+++|.-||++.|+|-.+||+.+..++ .+||||||+|.+.|+|++||+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG-----------------~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSG-----------------DNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCC-----------------CCcceEEEEeecHHHHHHHHH
Confidence 356899999999999999999999999999999999875432 359999999999999999999
Q ss_pred HHcCCCCC
Q 009251 366 ELNDEGNW 373 (539)
Q Consensus 366 ~Ln~~~~~ 373 (539)
.||+.++-
T Consensus 144 ~lnn~Eir 151 (506)
T KOG0117|consen 144 ELNNYEIR 151 (506)
T ss_pred HhhCcccc
Confidence 99998653
No 60
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.2e-09 Score=107.58 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=59.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.-..|||+||++++..|+|+++|++||+|....|+.|+.++++ |||+||+|.+.|+|++|++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rs-----------------kGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRS-----------------KGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccc-----------------cceeeEEeecHHHHHHHhcC
Confidence 3457999999999999999999999999999999888765432 89999999999999999996
Q ss_pred HcCC
Q 009251 367 LNDE 370 (539)
Q Consensus 367 Ln~~ 370 (539)
-|-.
T Consensus 74 p~pi 77 (247)
T KOG0149|consen 74 PNPI 77 (247)
T ss_pred CCCc
Confidence 6543
No 61
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.1e-10 Score=110.96 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=73.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.++.-|||+|||++.|+.+|..+|++||+|.+|.+++|+.++++ |||||..|++.-+..-||.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKS-----------------KGFaFLcYEDQRSTILAVD 95 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKS-----------------KGFAFLCYEDQRSTILAVD 95 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcc-----------------cceEEEEecCccceEEEEe
Confidence 46789999999999999999999999999999999998765543 8999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.-..
T Consensus 96 N~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 96 NLNGIKILGRTIRVDHVS 113 (219)
T ss_pred ccCCceecceeEEeeecc
Confidence 999999888888887554
No 62
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.6e-09 Score=107.71 Aligned_cols=113 Identities=19% Similarity=0.293 Sum_probs=83.4
Q ss_pred HHHHHHhhhcCcceEEeecccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCC
Q 009251 250 HSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGG 329 (539)
Q Consensus 250 ~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~ 329 (539)
.++...|+..-.-|.+.....||.-..|-. +.++...|||.+||..+|..+|+.+|+.||.|..-||+.++.++-
T Consensus 93 p~DAe~AintlNGLrLQ~KTIKVSyARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~- 167 (360)
T KOG0145|consen 93 PKDAEKAINTLNGLRLQNKTIKVSYARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGL- 167 (360)
T ss_pred hHHHHHHHhhhcceeeccceEEEEeccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccce-
Confidence 344455555555566654444443333322 346778999999999999999999999999999999998865432
Q ss_pred CCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCC--CceEEEEee
Q 009251 330 ASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWR--SGLRVRLML 383 (539)
Q Consensus 330 ~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~--~glrV~l~~ 383 (539)
.||.+||.|+..++|+.||+.||+..--+ ..|.|.++.
T Consensus 168 ----------------srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 168 ----------------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred ----------------ecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 38999999999999999999999986333 245666554
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.90 E-value=2.1e-09 Score=102.28 Aligned_cols=81 Identities=22% Similarity=0.224 Sum_probs=71.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+..||||+||++.++++-|.++|-++|.|.+|+|-+++.+ -..+|||||||.++|+|+-||+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~-----------------~~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT-----------------QKHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc-----------------ccccceeEEEEechhhhHHHHHH
Confidence 5679999999999999999999999999999999544321 12489999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||...+.++.|+|..+..
T Consensus 71 ln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 71 LNMVKLYGRPIRVNKASA 88 (203)
T ss_pred HHHHHhcCceeEEEeccc
Confidence 999999999999998773
No 64
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.2e-09 Score=114.35 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=101.1
Q ss_pred hcceeeccCCCccccHHHHHhhc---CCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecccccccC----
Q 009251 203 NQVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQ---- 275 (539)
Q Consensus 203 kQVEyYFSD~NL~~D~fL~~~i~---kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRRk---- 275 (539)
.|||-+||+.--.+-.|+...-. +.+-|||.+++.-.-+|..+.+..... .-.+|.|.....+.|-.
T Consensus 20 ~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf------~Gr~l~v~~A~~R~r~e~~~~ 93 (678)
T KOG0127|consen 20 EQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF------EGRILNVDPAKKRARSEEVEK 93 (678)
T ss_pred hHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc------cceecccccccccccchhccc
Confidence 47788899888777666654322 235677766655544443333322000 00112222222111111
Q ss_pred -------CCC----cchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCccc
Q 009251 276 -------NPL----TESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (539)
Q Consensus 276 -------~Pl----~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~ 344 (539)
.++ +..+.-....-.|+|+|||+.+..++|+.+|+.||.|..|.| |+. +.++
T Consensus 94 ~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~I--P~k---------~dgk------ 156 (678)
T KOG0127|consen 94 GENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVI--PRK---------KDGK------ 156 (678)
T ss_pred ccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEc--ccC---------CCCC------
Confidence 011 111111122558999999999999999999999999999998 432 1122
Q ss_pred ccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEeeec
Q 009251 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 345 ~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~~~~ 385 (539)
-.|||||.|....+|++|++.+|+..+.++.+-|.++..+
T Consensus 157 -lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 157 -LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred -ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 1699999999999999999999999999998988887654
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=6.1e-09 Score=80.67 Aligned_cols=55 Identities=42% Similarity=0.512 Sum_probs=45.4
Q ss_pred HHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEE
Q 009251 305 LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 305 L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l 381 (539)
|.++|++||+|..|.+.... +++|||+|.+.++|++|++.||+..+.++.|+|.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----------------------~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----------------------RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----------------------TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68899999999999996421 37999999999999999999999887666666654
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.84 E-value=1.5e-08 Score=106.75 Aligned_cols=76 Identities=29% Similarity=0.358 Sum_probs=64.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhc-CCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~-~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..|+|||.|||+|+..++|++||.+ .|+|..|.++.|. ++|. +|||.|||+++|.++||++
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-----------~GK~-------rGcavVEFk~~E~~qKa~E 104 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-----------SGKA-------RGCAVVEFKDPENVQKALE 104 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-----------CCCc-------CCceEEEeeCHHHHHHHHH
Confidence 4578999999999999999999964 8999999998873 3443 8899999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 009251 366 ELNDEGNWRSGLRVR 380 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~ 380 (539)
.||.....++.|.|.
T Consensus 105 ~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 105 KLNKYEVNGRELVVK 119 (608)
T ss_pred HhhhccccCceEEEe
Confidence 999877555555554
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=7e-09 Score=111.75 Aligned_cols=80 Identities=26% Similarity=0.290 Sum_probs=64.7
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.+||||+|||+|+|+|+|.+.|++||+|+++.||.+..++. .+|+|||-|.+..+|++||+..
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~-----------------skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGH-----------------SKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCC-----------------cccceEEEeccHHHHHHHHHhc
Confidence 37999999999999999999999999999999998865432 2899999999999999999976
Q ss_pred cCC------CCCCCceEEEEeee
Q 009251 368 NDE------GNWRSGLRVRLMLR 384 (539)
Q Consensus 368 n~~------~~~~~glrV~l~~~ 384 (539)
+-. .+.++-|+|.++..
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred CccCCCceEEEeccEEeeeeccc
Confidence 321 23334466665543
No 68
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=7.1e-09 Score=103.79 Aligned_cols=81 Identities=23% Similarity=0.285 Sum_probs=71.6
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
--|||+.|..+++.|+|++.|.+||+|...+|++|..+++ +|||+||.|-..++||.||..||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K-----------------sKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK-----------------SKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCc-----------------ccceeEEeccchHHHHHHHHHhC
Confidence 3799999999999999999999999999999999865433 29999999999999999999999
Q ss_pred CCCCCCCceEEEEeeecC
Q 009251 369 DEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~~ 386 (539)
++=+.++.||-.++.++.
T Consensus 126 GqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKP 143 (321)
T ss_pred CeeeccceeeccccccCc
Confidence 987777778877777655
No 69
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.9e-08 Score=106.94 Aligned_cols=78 Identities=29% Similarity=0.353 Sum_probs=67.9
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
.|||+||+++++..+|.++|+.||+|.+|++..+.. +.||| ||+|+++++|++||+.||+
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-------------------g~kg~-FV~f~~e~~a~~ai~~~ng 137 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-------------------GSKGY-FVQFESEESAKKAIEKLNG 137 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-------------------Cceee-EEEeCCHHHHHHHHHHhcC
Confidence 499999999999999999999999999999976521 13899 9999999999999999999
Q ss_pred CCCCCCceEEEEeeecCC
Q 009251 370 EGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 370 ~~~~~~glrV~l~~~~~~ 387 (539)
..+.++.+.|.+...+..
T Consensus 138 ~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 138 MLLNGKKIYVGLFERKEE 155 (369)
T ss_pred cccCCCeeEEeeccchhh
Confidence 998888888877665443
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.77 E-value=1e-08 Score=112.11 Aligned_cols=71 Identities=23% Similarity=0.328 Sum_probs=56.0
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcC------------CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEE
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAV------------GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFV 352 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~------------G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFV 352 (539)
+...|+|||+|||.++|+++|+++|+.| +.|..|.+. ..||||||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~kg~afV 228 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----------------------KEKNFAFL 228 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----------------------CCCCEEEE
Confidence 4567899999999999999999999975 234444442 12789999
Q ss_pred EeccHHHHHHHHHHHcCCCCCCCceEE
Q 009251 353 EYESVELAEKAIAELNDEGNWRSGLRV 379 (539)
Q Consensus 353 EFes~E~AekAv~~Ln~~~~~~~glrV 379 (539)
||++.|+|++||+ ||+..+.+..|+|
T Consensus 229 eF~~~e~A~~Al~-l~g~~~~g~~l~v 254 (509)
T TIGR01642 229 EFRTVEEATFAMA-LDSIIYSNVFLKI 254 (509)
T ss_pred EeCCHHHHhhhhc-CCCeEeeCceeEe
Confidence 9999999999995 9987755544444
No 71
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=1.8e-08 Score=81.92 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=47.2
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCc
Q 009251 302 HQNLMKIFS----AVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (539)
Q Consensus 302 ~e~L~e~Fs----~~G~V~~Vr-I~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~g 376 (539)
+++|+++|+ +||.|.+|. |..++.+. ....+|||||+|++.++|++|++.||+..+.++-
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~---------------~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY---------------ENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC---------------CCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 468888888 999999995 65554220 0123899999999999999999999998765544
Q ss_pred eE
Q 009251 377 LR 378 (539)
Q Consensus 377 lr 378 (539)
|+
T Consensus 67 l~ 68 (70)
T smart00361 67 VK 68 (70)
T ss_pred EE
Confidence 43
No 72
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.76 E-value=1.2e-08 Score=113.46 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=72.6
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
.+.+|||||++|+..+++++|..+|+.||+|.+|.++.+ ++||||.+....+|++|+
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----------------------R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----------------------RGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----------------------CceeEEEEeehhHHHHHH
Confidence 457899999999999999999999999999999998643 789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeecCCCC
Q 009251 365 AELNDEGNWRSGLRVRLMLRRGSKP 389 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~~~~k~ 389 (539)
.+|++..+..+-|+|+++..+..|.
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred HHHhcccccceeeEEeeeccCCcch
Confidence 9999888777778888877666553
No 73
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.2e-08 Score=105.59 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=63.6
Q ss_pred hhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 282 ~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
+..+.+.-.+||+-+|..+++.||+++|++||.|..|.|++|+.++ ..||||||.|.+.++|.
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~-----------------~s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG-----------------QSKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC-----------------cccceEEEEeccHHHHH
Confidence 3344556689999999999999999999999999999999886432 33899999999999999
Q ss_pred HHHHHHcCCCC
Q 009251 362 KAIAELNDEGN 372 (539)
Q Consensus 362 kAv~~Ln~~~~ 372 (539)
+|+..|.+...
T Consensus 91 ~a~~Alhn~kt 101 (510)
T KOG0144|consen 91 EAINALHNQKT 101 (510)
T ss_pred HHHHHhhcccc
Confidence 99999987643
No 74
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=1.6e-08 Score=102.13 Aligned_cols=74 Identities=26% Similarity=0.263 Sum_probs=67.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+.+|+|+||...++.++|++.|++||.|..+.|. |+++||.|+-.|+|..|++.
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-------------------------kdy~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-------------------------KDYAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeee-------------------------cceeEEEEeeccchHHHHhc
Confidence 34589999999999999999999999999999985 67999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009251 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~ 385 (539)
||+.++.++-|+|.+...+
T Consensus 132 l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ccccccccceeeeeeeccc
Confidence 9999999999999887654
No 75
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=3.8e-08 Score=101.47 Aligned_cols=80 Identities=24% Similarity=0.302 Sum_probs=68.2
Q ss_pred hhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
.++...+||||++|-..+++.+|.+.|.+||+|++|++... ++||||+|.+.++|++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----------------------~~CAFv~ftTR~aAE~ 279 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----------------------KGCAFVTFTTREAAEK 279 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----------------------cccceeeehhhHHHHH
Confidence 34556789999999889999999999999999999999532 6799999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeecC
Q 009251 363 AIAELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~~~~ 386 (539)
|.+++-+ .+..+|.+|.|.+.+.
T Consensus 280 Aae~~~n-~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 280 AAEKSFN-KLVINGFRLKIKWGRP 302 (377)
T ss_pred HHHhhcc-eeeecceEEEEEeCCC
Confidence 9998776 4556788888887544
No 76
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.5e-08 Score=104.16 Aligned_cols=165 Identities=24% Similarity=0.235 Sum_probs=124.6
Q ss_pred CCCCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeec
Q 009251 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (539)
Q Consensus 189 ~~~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsed 268 (539)
.+.++++++..+.+.-++--|+++-.++ +..+.+| +.-. ++.|..-+...+.++.+...|-....|.|...
T Consensus 80 ~i~nl~~~~~~~~~~d~f~~~g~ilS~k-------v~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 80 FIKNLDESIDNKSLYDTFSEFGNILSCK-------VATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred eecCCCcccCcHHHHHHHHhhcCeeEEE-------EEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 3446677777666666666677776665 7778888 5555 89998888888888888887877888888766
Q ss_pred ccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCccccccc
Q 009251 269 GKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL 348 (539)
Q Consensus 269 g~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG 348 (539)
..+..|..++.+ .. .....+||+|+..+++.+.|.++|+.||.|..+.++.+.. + .+++
T Consensus 151 ~~~~er~~~~~~-~~--~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-----------g-------~~~~ 209 (369)
T KOG0123|consen 151 ERKEEREAPLGE-YK--KRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-----------G-------KSKG 209 (369)
T ss_pred cchhhhcccccc-hh--hhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-----------C-------CCCC
Confidence 555555555554 22 2345899999999999999999999999999999975421 1 2388
Q ss_pred EEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 349 HAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 349 ~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
|+||+|++.|+|++|++.|++....+.-+.|.-..
T Consensus 210 ~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 210 FGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred ccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 99999999999999999999987665544444333
No 77
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=6.3e-08 Score=96.60 Aligned_cols=78 Identities=22% Similarity=0.330 Sum_probs=69.2
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
..|+|.-||..+|.|+|+.+|+..|+|+++++++|+.++- +-||+||.|-+++||++||..||
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGq-----------------SLGYGFVNYv~p~DAe~AintlN 104 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQ-----------------SLGYGFVNYVRPKDAEKAINTLN 104 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeecccccc-----------------ccccceeeecChHHHHHHHhhhc
Confidence 4688888999999999999999999999999999865432 26899999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 009251 369 DEGNWRSGLRVRLML 383 (539)
Q Consensus 369 ~~~~~~~glrV~l~~ 383 (539)
+-++..+.|+|.++.
T Consensus 105 GLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 105 GLRLQNKTIKVSYAR 119 (360)
T ss_pred ceeeccceEEEEecc
Confidence 999888888888764
No 78
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.5e-08 Score=107.42 Aligned_cols=64 Identities=27% Similarity=0.449 Sum_probs=57.3
Q ss_pred HHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeec
Q 009251 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSED 268 (539)
Q Consensus 198 ~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsed 268 (539)
.+.|.+|||||||.+||++|.||++ +||+|.+|++|+||..|+.|+++|.+||+++-+|++-.|
T Consensus 301 ~~~~~~~ie~~FSeE~~~~d~~n~~-------k~~~l~~ia~F~r~ad~s~d~nli~~alr~s~ive~~~d 364 (448)
T KOG2590|consen 301 IAFIQEPIEFYFSEENLQRDRFNRE-------KFVPLRVIAKFKRVADLSSDINLILAALRNSLIVEETGD 364 (448)
T ss_pred ccccccccccccchHHHhhhhhhhc-------ccchhhhhhhhhhhhhcccCHHHHHHHHhhhhhhhccch
Confidence 5788999999999999999999875 789999999999999999999999999999976665433
No 79
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.60 E-value=1.4e-07 Score=105.10 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=7.5
Q ss_pred CCCCCCcCCCCCCCC
Q 009251 95 PPSPHHVYPPHGTGA 109 (539)
Q Consensus 95 p~~~~~~~~~~~~~~ 109 (539)
||+.|-..+||||++
T Consensus 587 pp~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 587 PPGGFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCCCCC
Confidence 335555545555544
No 80
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.1e-08 Score=107.20 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=55.5
Q ss_pred HHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcC
Q 009251 198 IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS 260 (539)
Q Consensus 198 ~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S 260 (539)
+..|+.|||||||..||+.|.||++++. .+||||+.+|..|.|.+.+..|..+|..||+.+
T Consensus 271 I~a~k~QiEyYFseenl~~d~~lrkk~~--kaGf~plsfi~kf~Rn~Sf~gd~nLilaa~ke~ 331 (438)
T COG5193 271 IMAKKEQIEYYFSEENLKSDEFLRKKFK--KAGFIPLSFIGKFYRNLSFGGDKNLILAAMKEV 331 (438)
T ss_pred hhhHHhhhHhhhhHHhhhhhhHHHhhhh--hcccccHhhhhhhhhccccCCchhhhHHHHHHH
Confidence 5677889999999999999999999965 459999999999999999999999999988875
No 81
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.56 E-value=1.1e-07 Score=90.71 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=68.9
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEE-EEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~V-rI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..|||+||..++++.-|-++|+.||.|... .|+++-.++ ..++|+||.|++.|.+.+|++.+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg-----------------~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG-----------------NPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCC-----------------CCCCCeEEechhHHHHHHHHHHh
Confidence 589999999999999999999999987553 555543321 12789999999999999999999
Q ss_pred cCCCCCCCceEEEEeeecCCC
Q 009251 368 NDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 368 n~~~~~~~glrV~l~~~~~~k 388 (539)
|++.+..+.+.|.++.++..|
T Consensus 160 ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred ccchhcCCceEEEEEEecCCC
Confidence 999999999999988765444
No 82
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=8.1e-08 Score=99.44 Aligned_cols=75 Identities=23% Similarity=0.272 Sum_probs=66.5
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
|.|||+.+.++..++.|+..|..||.|++|.+--|-. ....||||||||+-.|.|+-|++.||
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----------------T~kHKgFAFVEYEvPEaAqLAlEqMN 176 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQMN 176 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----------------cccccceEEEEEeCcHHHHHHHHHhc
Confidence 6799999999999999999999999999999855422 22349999999999999999999999
Q ss_pred CCCCCCCceEEE
Q 009251 369 DEGNWRSGLRVR 380 (539)
Q Consensus 369 ~~~~~~~glrV~ 380 (539)
+..+.++.|+|.
T Consensus 177 g~mlGGRNiKVg 188 (544)
T KOG0124|consen 177 GQMLGGRNIKVG 188 (544)
T ss_pred cccccCcccccc
Confidence 999988888876
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.1e-07 Score=98.23 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=68.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
....|||..|..-+|.|+|+-||+.||.|.++.|++++.++.+ --||||||++.+++++|+-+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds-----------------LqyaFiEFen~escE~AyFK 300 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS-----------------LQYAFIEFENKESCEQAYFK 300 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch-----------------hheeeeeecchhhHHHHHhh
Confidence 3568999999999999999999999999999999998654432 34899999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
|++..+..+-|.|.+.
T Consensus 301 MdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 301 MDNVLIDDRRIHVDFS 316 (479)
T ss_pred hcceeeccceEEeehh
Confidence 9998888877777653
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.50 E-value=5.5e-08 Score=100.97 Aligned_cols=151 Identities=17% Similarity=0.286 Sum_probs=93.3
Q ss_pred cceeeccCCCccccHHHHHhhc---CCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeecccccccCCCCcc
Q 009251 204 QVEYYFSDLNLATTDHLIRFIL---KDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGKKIKRQNPLTE 280 (539)
Q Consensus 204 QVEyYFSD~NL~~D~fL~~~i~---kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e 280 (539)
.|.+||+..-...|..+++... +...|||.++. .+.|..+|.... +.| |++.|.-+..++.
T Consensus 22 ~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~-------------~~~v~~vl~~~~-h~~--dgr~ve~k~av~r 85 (311)
T KOG4205|consen 22 SLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFAT-------------PEGVDAVLNART-HKL--DGRSVEPKRAVSR 85 (311)
T ss_pred HHHHHhcccCceeeEEEeccCCCCCcccccceecCC-------------Ccchheeecccc-ccc--CCccccceeccCc
Confidence 4457888877777777665422 22455554442 233333333322 111 2333322222222
Q ss_pred hhh----hhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 281 SDL----EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 281 ~~~----~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
.+. +....+.|||++|+.++++++|++.|++||.|..+-|+++..+. ..++|+||+|++
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~-----------------~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS-----------------RPRGFGFVTFDS 148 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc-----------------ccccceeeEecc
Confidence 111 11245689999999999999999999999999999998875432 238999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEeeecCCC
Q 009251 357 VELAEKAIAELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~~~~~k 388 (539)
++.+++++. ..-..+..+-+.|..+..+...
T Consensus 149 e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 149 EDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ccccceecc-cceeeecCceeeEeeccchhhc
Confidence 999999876 3333444444555555544443
No 85
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=3.7e-07 Score=89.70 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=67.8
Q ss_pred cceeEEeecCCCcccHHHHHH----HhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMK----IFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e----~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
...||||.||.+.+..++|++ +|++||+|..|..+.. .| -+|-|||.|++.+.|-.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt-------------~K-------mRGQA~VvFk~~~~As~ 67 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT-------------PK-------MRGQAFVVFKETEAASA 67 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC-------------CC-------ccCceEEEecChhHHHH
Confidence 345999999999999998888 9999999999998643 11 17889999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009251 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~~ 384 (539)
|++.|++..+.++-|+|.++..
T Consensus 68 A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 68 ALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred HHHHhcCCcccCchhheecccC
Confidence 9999999999999998887654
No 86
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.43 E-value=2.9e-07 Score=99.75 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=68.4
Q ss_pred EEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCC
Q 009251 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~ 370 (539)
|||+||..+++++.|+.+|+.||.|..|.+..+-.+ ..+|||+||+|...|+|.+|++.||+.
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t-----------------G~skgfGfi~f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET-----------------GRSKGFGFITFVNKEDARKALEQLNGF 343 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeecccccc-----------------ccccCcceEEEecHHHHHHHHHHhccc
Confidence 899999999999999999999999999998665322 223899999999999999999999998
Q ss_pred CCCCCceEEEEeeecC
Q 009251 371 GNWRSGLRVRLMLRRG 386 (539)
Q Consensus 371 ~~~~~glrV~l~~~~~ 386 (539)
++-++-|+|.+...+.
T Consensus 344 elAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 344 ELAGRLIKVSVVTERV 359 (549)
T ss_pred eecCceEEEEEeeeec
Confidence 8888888888776443
No 87
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.43 E-value=4.1e-07 Score=101.02 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=66.8
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
+|||+||++++|.++|+.+|.+.|.|++|.|..-++. + .+ +-+.||+||||.+.|+|+.|++.|++
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~--------~-~k-----~lSmGfgFVEF~~~e~A~~a~k~lqg 582 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDP--------A-NK-----YLSMGFGFVEFAKPESAQAALKALQG 582 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccc--------c-cc-----ccccceeEEEecCHHHHHHHHHHhcC
Confidence 3999999999999999999999999999998542210 0 01 22379999999999999999999999
Q ss_pred CCCCCCceEEEEee
Q 009251 370 EGNWRSGLRVRLML 383 (539)
Q Consensus 370 ~~~~~~glrV~l~~ 383 (539)
+.+.+..|.|.+..
T Consensus 583 tvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 583 TVLDGHKLELKISE 596 (725)
T ss_pred ceecCceEEEEecc
Confidence 99888878887766
No 88
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.41 E-value=6.2e-07 Score=87.09 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=67.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC-CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~-G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..-.+||..+|..+.+.+|..+|.+| |.|..+|+-+.+.+ ..+||||||||+++|.|+-|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrT-----------------GNSKgYAFVEFEs~eVA~IaAE 110 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRT-----------------GNSKGYAFVEFESEEVAKIAAE 110 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccccc-----------------CCcCceEEEEeccHHHHHHHHH
Confidence 34478999999999999999999998 78888888554322 2349999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+-.+...=|.+.++...
T Consensus 111 TMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 111 TMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred HhhhhhhhhheeeeEEeCch
Confidence 99998888887888887643
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.41 E-value=3.9e-07 Score=96.34 Aligned_cols=75 Identities=28% Similarity=0.242 Sum_probs=65.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+.|+|||+|||.++|.+-|++-|.+||.|+.+.|+.. +|. || .|.|.++|+||.|+.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~-------------Gks-------kG--VVrF~s~edAEra~a 591 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN-------------GKS-------KG--VVRFFSPEDAERACA 591 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc-------------CCc-------cc--eEEecCHHHHHHHHH
Confidence 46789999999999999999999999999999998532 121 44 899999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|++.
T Consensus 592 ~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 592 LMNGSRLDGRNIKVTYF 608 (608)
T ss_pred HhccCcccCceeeeeeC
Confidence 99999999998988863
No 90
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.38 E-value=7.4e-07 Score=89.20 Aligned_cols=86 Identities=21% Similarity=0.206 Sum_probs=71.7
Q ss_pred hhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 282 DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 282 ~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
..++++.+.|||+|+...+|.++|+..|+.||.|..|.|..++..+ ..||||||||.+.+.++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~-----------------~~k~~~yvef~~~~~~~ 157 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG-----------------HPKGFAYVEFSSYELVE 157 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCC-----------------CcceeEEEecccHhhhH
Confidence 3456788999999999999999999999999999999997664321 13899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeec
Q 009251 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~~~ 385 (539)
+|++ ||+..+.+.-+.|.....+
T Consensus 158 ~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 158 EAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred HHhh-cCCcccccccceeeeeeee
Confidence 9999 9999877776666655433
No 91
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=1.2e-06 Score=97.86 Aligned_cols=23 Identities=39% Similarity=0.847 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCc
Q 009251 79 PPPAAAMVHPHPPPPHPPSPHHV 101 (539)
Q Consensus 79 ppp~~~~~~~~~ppp~p~~~~~~ 101 (539)
||||+++|.+.+|||||+++|.+
T Consensus 584 PPPpp~g~~Gg~ppPP~~gm~pm 606 (1102)
T KOG1924|consen 584 PPPPPGGFLGGPPPPPPPGMFPM 606 (1102)
T ss_pred CcCCCCCCCCCCCCCCCCCcccc
Confidence 33333555556666666666665
No 92
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.34 E-value=4.5e-07 Score=91.89 Aligned_cols=68 Identities=26% Similarity=0.294 Sum_probs=60.7
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
.|||+|||.++++.+|+.+|++||+|..+.|+ |.|+||..|+...|+.||..|++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-------------------------KNYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV-------------------------KNYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee-------------------------cccceEEeecccccHHHHhhccc
Confidence 58999999999999999999999999999995 67999999999999999999999
Q ss_pred CCCCCCceEEEEe
Q 009251 370 EGNWRSGLRVRLM 382 (539)
Q Consensus 370 ~~~~~~glrV~l~ 382 (539)
-.+.+..|+|.-.
T Consensus 59 YtLhg~nInVeaS 71 (346)
T KOG0109|consen 59 YTLHGVNINVEAS 71 (346)
T ss_pred ceecceEEEEEec
Confidence 8876666666544
No 93
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.30 E-value=1.9e-06 Score=86.69 Aligned_cols=80 Identities=20% Similarity=0.273 Sum_probs=68.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
...+|+|.||++.++.++|+++|..||.++.+-|.+++. +.+ .|+|-|.|+..++|++||+.
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-----------G~s-------~Gta~v~~~r~~DA~~avk~ 143 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-----------GRS-------LGTADVSFNRRDDAERAVKK 143 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-----------CCC-------CccceeeecchHhHHHHHHH
Confidence 345899999999999999999999999999999987642 222 67999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
|++..+.+.-|++.++..
T Consensus 144 ~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 144 YNGVALDGRPMKIEIISS 161 (243)
T ss_pred hcCcccCCceeeeEEecC
Confidence 999887777777777653
No 94
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.25 E-value=1.4e-06 Score=96.81 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=62.5
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
...|+|+|||+.++..+|++||..||.|++||| |+.. ...+.+|||||+|-+..+|..|++.|
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRl--PKK~---------------~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRL--PKKI---------------GKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeecc--chhh---------------cchhhccceeeeccCcHHHHHHHHhh
Confidence 347999999999999999999999999999999 4211 11234899999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 009251 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 n~~~~~~~glrV~l 381 (539)
-..-+.++-|-+.+
T Consensus 676 ~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEW 689 (725)
T ss_pred cccceechhhheeh
Confidence 87766665444443
No 95
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.22 E-value=1.1e-05 Score=87.64 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=64.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..|.|||.+|...+..-+|+.||++||+|.-..|+.... +. +.+.|+||++.+.++|.+||+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR-------------sP----GaRCYGfVTMSts~eAtkCI~h 466 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR-------------SP----GARCYGFVTMSTSAEATKCIEH 466 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC-------------CC----CcceeEEEEecchHHHHHHHHH
Confidence 367899999999998999999999999999888864321 11 2278999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
|.-.++.++-|.|.-+
T Consensus 467 LHrTELHGrmISVEka 482 (940)
T KOG4661|consen 467 LHRTELHGRMISVEKA 482 (940)
T ss_pred hhhhhhcceeeeeeec
Confidence 9988877766655543
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.8e-06 Score=86.65 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=70.4
Q ss_pred hhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
+.-+.|.|||-.||.+..+.||...|-.||.|.+.++.-|+.++- +|.|+||.|++..+|+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQ-----------------SKCFGFVSfDNp~SaQaA 343 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQ-----------------SKCFGFVSFDNPASAQAA 343 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccc-----------------ccceeeEecCCchhHHHH
Confidence 344789999999999999999999999999999999887765432 388999999999999999
Q ss_pred HHHHcCCCCCCCceEEEE
Q 009251 364 IAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l 381 (539)
|..||+..+.-+-|+|.|
T Consensus 344 IqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 344 IQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred HHHhcchhhhhhhhhhhh
Confidence 999999887777676665
No 97
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=2.4e-06 Score=92.97 Aligned_cols=71 Identities=28% Similarity=0.440 Sum_probs=60.6
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...+||+|-|||.+++.++|.++|+.||+|+.|+.-. ..++.+||||-++-+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 45789999999999999999999999999999987621 11678999999999999999
Q ss_pred HHHcCCCCCCCce
Q 009251 365 AELNDEGNWRSGL 377 (539)
Q Consensus 365 ~~Ln~~~~~~~gl 377 (539)
++||..++..+-+
T Consensus 130 k~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 130 KALNRREIAGKRI 142 (549)
T ss_pred HHHHHHHhhhhhh
Confidence 9999876555433
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=5.2e-06 Score=82.03 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=56.3
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
.|||++|++.+.+.+|++||.+||.|..|.|. .||+||+|++.-+|+.||-.||+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 58999999999999999999999999999872 56899999999999999999999
Q ss_pred CCCCCCc
Q 009251 370 EGNWRSG 376 (539)
Q Consensus 370 ~~~~~~g 376 (539)
..+....
T Consensus 58 ~~l~~e~ 64 (216)
T KOG0106|consen 58 KELCGER 64 (216)
T ss_pred ceeccee
Confidence 8866554
No 99
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.98 E-value=2.9e-06 Score=83.15 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=65.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..|||||.||-+.+++|-|.|+|-..|.|..|.|...++ .+ .| ||||+|+++-...-|++.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-----------~~-------~k-Fa~v~f~~E~sv~~a~~L 68 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-----------QE-------QK-FAYVFFPNENSVQLAGQL 68 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-----------CC-------Cc-eeeeecccccchhhhhhh
Confidence 358999999999999999999999999999998843321 11 15 899999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+..+.++|.+-.
T Consensus 69 ~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 69 ENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cccchhccchhhccccc
Confidence 99998888877776643
No 100
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.96 E-value=7.5e-06 Score=82.29 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=64.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-++|.|||+=|...-++||++.+|..||.|..+.+++- .....||||||.|.+--+|+.||.
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg------------------~dg~sKGCAFVKf~s~~eAqaAI~ 78 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG------------------PDGNSKGCAFVKFSSHAEAQAAIN 78 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC------------------CCCCCCCceEEEeccchHHHHHHH
Confidence 36789999999999999999999999999999998753 222349999999999999999999
Q ss_pred HHcCCCCCCC---ceEEEEee
Q 009251 366 ELNDEGNWRS---GLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~---glrV~l~~ 383 (539)
.|.+...... -|-|.++.
T Consensus 79 aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 79 ALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred HhcccccCCCCccceEEEecc
Confidence 9998753322 24555543
No 101
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.95 E-value=2.3e-05 Score=81.58 Aligned_cols=76 Identities=21% Similarity=0.234 Sum_probs=61.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.-..|||..+..|.+++||+.+|+.||+|+.+.+.+.-+ ....|||+||||++..+...||..
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt-----------------~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT-----------------GRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC-----------------CCCccceeeEEeccccchHHHhhh
Confidence 345899999999999999999999999999999976421 123499999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 009251 367 LNDEGNWRSGLRV 379 (539)
Q Consensus 367 Ln~~~~~~~glrV 379 (539)
||-..+.+.=|+|
T Consensus 272 MNlFDLGGQyLRV 284 (544)
T KOG0124|consen 272 MNLFDLGGQYLRV 284 (544)
T ss_pred cchhhcccceEec
Confidence 9865544443444
No 102
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.93 E-value=2.4e-05 Score=81.16 Aligned_cols=91 Identities=22% Similarity=0.154 Sum_probs=63.1
Q ss_pred hhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEE-EEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHH
Q 009251 281 SDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (539)
Q Consensus 281 ~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~V-rI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~ 359 (539)
...+......|||.|||.|+|.+++.++|++||-|..- +.-.++ .+.++. ....-||-|+|.|-.+|+
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk---------~KlYrd--~~G~lKGDaLc~y~K~ES 195 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPK---------VKLYRD--NQGKLKGDALCCYIKRES 195 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCee---------EEEEec--CCCCccCceEEEeecccH
Confidence 33445566789999999999999999999999987431 110000 011111 112238899999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEe
Q 009251 360 AEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 360 AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
++-|++.|++..+.+.-|+|..+
T Consensus 196 VeLA~~ilDe~~~rg~~~rVerA 218 (382)
T KOG1548|consen 196 VELAIKILDEDELRGKKLRVERA 218 (382)
T ss_pred HHHHHHHhCcccccCcEEEEehh
Confidence 99999999988866555565543
No 103
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=5.1e-05 Score=67.20 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=40.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
++|.|.++..+++.++|+++|+.||.|..|.+... -..|||.|.+.++|++|++.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHHHHHH
Confidence 57899999999999999999999999999998431 2369999999999999999887
Q ss_pred CC
Q 009251 369 DE 370 (539)
Q Consensus 369 ~~ 370 (539)
..
T Consensus 59 ~~ 60 (105)
T PF08777_consen 59 EA 60 (105)
T ss_dssp HT
T ss_pred hc
Confidence 65
No 104
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.71 E-value=3e-05 Score=80.84 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=54.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
+.+.|||++|.+++++|.|++.|+.||+|..+.|+++..+++ .+||+||+|++.+....+|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~r-----------------srgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGR-----------------SRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCC-----------------cccccceecCCCcchheeec
Confidence 578999999999999999999999999999999988764322 27899999999988877765
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.67 E-value=7.9e-05 Score=73.53 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=100.9
Q ss_pred CCChHH-HHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccch-hhHHHhhh-----cHHHHHHhhhcCcceE
Q 009251 192 GLNDES-IQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF-KKIKAIIS-----SHSHLASVLRKSSKLV 264 (539)
Q Consensus 192 ~ls~e~-~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sF-kKmK~Lt~-----d~e~I~~ALr~S~~Le 264 (539)
++.|.+ .++++++|.--||..-=.-|--.++..++.++-||.++.+.+- .-+++|.. ..-.|..|..+|+.+.
T Consensus 16 nLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~ 95 (221)
T KOG4206|consen 16 NLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIA 95 (221)
T ss_pred hccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhh
Confidence 343333 5677888888888766333433444456677889888775443 34444432 1234555555554322
Q ss_pred -----Eeecccccc--cC----CCCcch----------------hhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeE
Q 009251 265 -----VSEDGKKIK--RQ----NPLTES----------------DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT 317 (539)
Q Consensus 265 -----Vsedg~kVR--Rk----~Pl~e~----------------~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~ 317 (539)
+.+..++.+ +. .+.... +.......++|+.|||.+++.+.|..+|..|.--+.
T Consensus 96 ~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~ke 175 (221)
T KOG4206|consen 96 QAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKE 175 (221)
T ss_pred ccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccce
Confidence 222222111 10 110000 111235679999999999999999999999999999
Q ss_pred EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCC
Q 009251 318 IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (539)
Q Consensus 318 VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~ 373 (539)
||++..+ ++.|||||.+...|.-|...|.+-.+-
T Consensus 176 ir~i~~~----------------------~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 176 IRLIPPR----------------------SGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred eEeccCC----------------------CceeEEecchhhhhHHHhhhhccceec
Confidence 9997432 678999999999999999988876644
No 106
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.61 E-value=0.0003 Score=69.50 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=58.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
-|||||.+||.|+.--+|-.+|..|---+...|.+- .|..+ -.|-+|||+|.+..+|+.|+.+|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~T----------sk~~~------~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYT----------SKGDQ------VCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeec----------cCCCc------cccceEEEEecchHHHHHHHHHh
Confidence 479999999999999999999998743333333211 01111 12578999999999999999999
Q ss_pred cCCCCCCC---ceEEEEee
Q 009251 368 NDEGNWRS---GLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~---glrV~l~~ 383 (539)
|+.+++.. .|+|.++.
T Consensus 98 NGvrFDpE~~stLhiElAK 116 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAK 116 (284)
T ss_pred cCeeeccccCceeEeeehh
Confidence 99876653 45666553
No 107
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.57 E-value=0.00039 Score=59.16 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=46.9
Q ss_pred eeEEeecCCCcccHH----HHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQ----NLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~t~e----~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
..|||.|||.+.+.. -|+.|+.-|| .|..|. .+.|+|.|.+.|.|++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------------------------~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------------------------GGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------------------------CCEEEEEeCCHHHHHHH
Confidence 379999999987654 5788888997 555442 45799999999999999
Q ss_pred HHHHcCCCCCCCceEEEEe
Q 009251 364 IAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~ 382 (539)
.+.|+++..+++.|.|...
T Consensus 56 ~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp HHHHTT--SSSS--EEESS
T ss_pred HHhhcccccccceEEEEEc
Confidence 9999999998888877754
No 108
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.56 E-value=0.00027 Score=73.83 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=70.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+.-||||-+|+..+|++.|.++|.+||.|+.= +.+++. ....++.+ .+...|+-|.|.|++.-.|+.||+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrn-----K~t~kP---ki~~y~dk-eT~~~KGeatvS~~D~~~akaai~~ 135 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRN-----KRTGKP---KIKIYTDK-ETGAPKGEATVSYEDPPAAKAAIEW 135 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccC-----CCCCCc---chhccccc-cccCcCCceeeeecChhhhhhhhhh
Confidence 45599999999999999999999999987642 222211 11112222 3445699999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecCC
Q 009251 367 LNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~~~ 387 (539)
+++..+..+.|+|.++.++..
T Consensus 136 ~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 136 FAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred hccccccCCCchhhhhhhccC
Confidence 999998888888888776543
No 109
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.51 E-value=4.5e-05 Score=83.12 Aligned_cols=80 Identities=28% Similarity=0.292 Sum_probs=66.7
Q ss_pred hhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
.+|.+.||||+--|....+.-+|.+||+.+|+|..|+|+.++.+. ..||.|||||.+.+....
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~-----------------rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSR-----------------RSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccch-----------------hhcceeEEEEecccchhh
Confidence 356788999999999999999999999999999999999876432 128899999999999999
Q ss_pred HHHHHcCCCCCCCceEEE
Q 009251 363 AIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~ 380 (539)
||. |+|+.+.+..+.|.
T Consensus 237 aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 237 AIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred Hhh-hcCCcccCceeEec
Confidence 995 99888655555443
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.50 E-value=0.00022 Score=77.06 Aligned_cols=59 Identities=24% Similarity=0.345 Sum_probs=47.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
...|-+++||+.+|++||.+||+.|+ |.++.+.+. .+| +.|-|||||+++|++++|+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~------------~Gr-------~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR------------NGR-------PSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc------------CCC-------cCcceEEEeechHHHHHHHHh
Confidence 34677899999999999999999995 677666332 122 267899999999999999984
No 111
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.48 E-value=0.00013 Score=81.49 Aligned_cols=80 Identities=20% Similarity=0.277 Sum_probs=65.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-+...|||.||+..++++.|...|+.||.|..|+|+.|++.... | ....|+||-|-+..+|+.|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk-----~---------r~r~cgfvafmnR~D~era~k 237 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEK-----R---------RERNCGFVAFMNRADAERALK 237 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhh-----c---------cccccceeeehhhhhHHHHHH
Confidence 34568999999999999999999999999999999999753210 1 125699999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 009251 366 ELNDEGNWRSGLRV 379 (539)
Q Consensus 366 ~Ln~~~~~~~glrV 379 (539)
+|++..+....|++
T Consensus 238 ~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 238 ELQGIIVMEYEMKL 251 (877)
T ss_pred Hhcceeeeeeeeee
Confidence 99987654444443
No 112
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.47 E-value=0.00021 Score=77.17 Aligned_cols=74 Identities=26% Similarity=0.346 Sum_probs=51.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
.-+|-+++||+.||+++|.+||+-.-.|.. -|+.+ ++.|. +. .|-|||.|++.|.||+|+..-
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~-gi~l~--------~d~rg-R~-------tGEAfVqF~sqe~ae~Al~rh 165 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPD-GILLP--------MDQRG-RP-------TGEAFVQFESQESAEIALGRH 165 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCccccc-ceeee--------ccCCC-Cc-------ccceEEEecCHHHHHHHHHHH
Confidence 457889999999999999999998644433 33222 23332 22 567999999999999999843
Q ss_pred cCCCCCCCceEE
Q 009251 368 NDEGNWRSGLRV 379 (539)
Q Consensus 368 n~~~~~~~glrV 379 (539)
.+.+..+.|.|
T Consensus 166 -re~iGhRYIEv 176 (510)
T KOG4211|consen 166 -RENIGHRYIEV 176 (510)
T ss_pred -HHhhccceEEe
Confidence 33444444433
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.46 E-value=0.00027 Score=54.97 Aligned_cols=52 Identities=21% Similarity=0.406 Sum_probs=42.2
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+.|.|.|++.+.. +.|.+.|..||+|..+.+- . ...++||.|++..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~---------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--E---------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--C---------------------CCcEEEEEECCHHHHHhhC
Confidence 5899999987665 5566699999999998872 0 1457999999999999996
No 114
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.37 E-value=0.00049 Score=72.99 Aligned_cols=73 Identities=22% Similarity=0.354 Sum_probs=63.6
Q ss_pred ceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+|.|.||.++ +|.+.|--+|+.||+|.+|.|++.+ |..|+|.|.+...|+-|++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 468889999765 7999999999999999999998642 45799999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
|++..+|++-|+|.+.
T Consensus 355 L~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLS 370 (492)
T ss_pred hhcceecCceEEEeec
Confidence 9999999987777653
No 115
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.27 E-value=0.00026 Score=69.98 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=50.6
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.||||-||-.++++++|+.+|+.|--...++|+-.+ | ...|||+|++.|.|..|+..|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~----------------g-----~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG----------------G-----MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC----------------C-----cceEeecHHHHHHHHHHHHHhh
Confidence 489999999999999999999999877777773210 1 3469999999999999999887
Q ss_pred CCC
Q 009251 369 DEG 371 (539)
Q Consensus 369 ~~~ 371 (539)
+..
T Consensus 270 g~~ 272 (284)
T KOG1457|consen 270 GNL 272 (284)
T ss_pred cce
Confidence 643
No 116
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.26 E-value=0.0012 Score=57.88 Aligned_cols=66 Identities=20% Similarity=0.243 Sum_probs=51.5
Q ss_pred eeEEeecCCCcccHHHHHHHhhcC--CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~--G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.||.++|||-..|.+.|.+++.+. |...-+-+ |.|.++ ..|.|||||.|.+.+.|.+..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YL----------PiDf~~-------~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYL----------PIDFKN-------KCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEe----------eeeccC-------CCceEEEEEEcCCHHHHHHHHHH
Confidence 489999999999999999988763 44444333 333332 23589999999999999999999
Q ss_pred HcCCC
Q 009251 367 LNDEG 371 (539)
Q Consensus 367 Ln~~~ 371 (539)
+++..
T Consensus 65 f~g~~ 69 (97)
T PF04059_consen 65 FNGKK 69 (97)
T ss_pred HcCCc
Confidence 99865
No 117
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.22 E-value=0.00018 Score=71.18 Aligned_cols=69 Identities=23% Similarity=0.283 Sum_probs=58.0
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...+.|+|.+|...+..++|+++|..+|.+..+.++ .+++||+|++.++|.+|++
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-------------------------~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-------------------------RNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-------------------------ccccceeehhhhhhhhcch
Confidence 345788999999999999999999999998554431 4579999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 009251 366 ELNDEGNWRSGLRV 379 (539)
Q Consensus 366 ~Ln~~~~~~~glrV 379 (539)
.|++..+..+-|.+
T Consensus 152 ~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 152 KLDGKKLNGRRISV 165 (216)
T ss_pred hccchhhcCceeee
Confidence 99998876665555
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.11 E-value=0.00092 Score=67.23 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=60.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
++-.||.+.|-.+++++-|.+.|.+|=.....+++++. |.+|+ |||.||-|.+.+++..|+.+
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk----------RTgKS-------kgygfVSf~~pad~~rAmre 251 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK----------RTGKS-------KGYGFVSFRDPADYVRAMRE 251 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccc----------ccccc-------ccceeeeecCHHHHHHHHHh
Confidence 44579999999999999999999999777666776653 44444 89999999999999999999
Q ss_pred HcCCCCCCCceE
Q 009251 367 LNDEGNWRSGLR 378 (539)
Q Consensus 367 Ln~~~~~~~glr 378 (539)
||+....-+.|+
T Consensus 252 m~gkyVgsrpik 263 (290)
T KOG0226|consen 252 MNGKYVGSRPIK 263 (290)
T ss_pred hcccccccchhH
Confidence 998765444433
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.76 E-value=0.0028 Score=71.03 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=58.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCe-eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V-~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+.|-+.|+|++++.+||.+||..|-.+ .+|+|++.. + ....|-|.|-|++.|+|..|+..|
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd---------------~---G~pTGe~mvAfes~~eAr~A~~dl 929 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRND---------------D---GVPTGECMVAFESQEEARRASMDL 929 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecC---------------C---CCcccceeEeecCHHHHHhhhhcc
Confidence 467789999999999999999999644 445554321 1 112577999999999999999999
Q ss_pred cCCCCCCCceEEEE
Q 009251 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 n~~~~~~~glrV~l 381 (539)
+++.+..+.++|+|
T Consensus 930 ~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 930 DGQKIRNRVVSLRI 943 (944)
T ss_pred ccCcccceeEEEEe
Confidence 99987776666654
No 120
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0025 Score=70.03 Aligned_cols=77 Identities=30% Similarity=0.342 Sum_probs=56.8
Q ss_pred ceeEEeecCCCc--ccHH----HHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 288 SRIVVAENLPED--HCHQ----NLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rTVyV~nLP~d--~t~e----~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
...|+|.|+|-- ...+ -|.++|+++|+|.++-+ |- +. ..+.||++|+||++..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~--P~--------~e--------~ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYY--PI--------DE--------EGGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceee--cc--------Cc--------cCCeeeEEEEEecChhhHH
Confidence 347889999853 2233 46789999998887766 31 11 1224999999999999999
Q ss_pred HHHHHHcCCCCCCCc-eEEEEe
Q 009251 362 KAIAELNDEGNWRSG-LRVRLM 382 (539)
Q Consensus 362 kAv~~Ln~~~~~~~g-lrV~l~ 382 (539)
+||+.|||..+..+- +.|+++
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~f 141 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRLF 141 (698)
T ss_pred HHHHhcccceecccceEEeehh
Confidence 999999999887763 455554
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.66 E-value=0.0029 Score=65.48 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=52.4
Q ss_pred ceeEE-eecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVV-AENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVy-V~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++| |.+|++++++++|.+.|..||.|..|++..... ++ ..+|||||+|.+...+.+|+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~----------s~-------~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEE----------SG-------DSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCC----------cc-------chhhhhhhhhhhchhHHHHhhc
Confidence 34666 999999999999999999999999999843321 12 2389999999999999888875
Q ss_pred HcCCC
Q 009251 367 LNDEG 371 (539)
Q Consensus 367 Ln~~~ 371 (539)
....
T Consensus 247 -~~~~ 250 (285)
T KOG4210|consen 247 -QTRS 250 (285)
T ss_pred -ccCc
Confidence 4443
No 122
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.66 E-value=0.0033 Score=65.38 Aligned_cols=81 Identities=22% Similarity=0.263 Sum_probs=59.2
Q ss_pred hccceeEEeecCCCcccHHH------HHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccE--EEEEecc
Q 009251 285 ELQSRIVVAENLPEDHCHQN------LMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH--AFVEYES 356 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~------L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~--AFVEFes 356 (539)
.++..-|||-+|+..+-.|+ -.++|++||.|+.|-|.+.. ++.+ +..++ +||+|.+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~s~n----------st~~h~gvYITy~~ 174 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------SSLN----------STASHAGVYITYST 174 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------cccc----------cccccceEEEEecc
Confidence 45666899999998776554 35899999999999884321 1110 01223 5999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEE
Q 009251 357 VELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l 381 (539)
.|+|..||.+.++..++++-|+..+
T Consensus 175 kedAarcIa~vDgs~~DGr~lkatY 199 (480)
T COG5175 175 KEDAARCIAEVDGSLLDGRVLKATY 199 (480)
T ss_pred hHHHHHHHHHhccccccCceEeeec
Confidence 9999999999999987776665543
No 123
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.60 E-value=0.0059 Score=63.85 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=84.7
Q ss_pred HHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccc----------ccccCC-----------C--
Q 009251 221 IRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK----------KIKRQN-----------P-- 277 (539)
Q Consensus 221 ~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~----------kVRRk~-----------P-- 277 (539)
+-++..+.+|-+.-+-+|.|-|-.+..-.+.++.++.-...+|.|....- +.+++. .
T Consensus 171 k~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~ 250 (382)
T KOG1548|consen 171 KVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLL 250 (382)
T ss_pred eEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhc
Confidence 33455677888888889988776665444444433332333455553311 111010 0
Q ss_pred --Ccch--hhhhccceeEEeecCC--Cc--cc-------HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCc
Q 009251 278 --LTES--DLEELQSRIVVAENLP--ED--HC-------HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGM 342 (539)
Q Consensus 278 --l~e~--~~~e~~~rTVyV~nLP--~d--~t-------~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~ 342 (539)
.++. .......+||+++|+= ++ .+ .++|++-.++||.|.+|.|+ ++
T Consensus 251 dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d~------------------ 311 (382)
T KOG1548|consen 251 DWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-DR------------------ 311 (382)
T ss_pred ccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-cc------------------
Confidence 1111 1223346899999983 21 22 35777888999999999985 21
Q ss_pred ccccccEEEEEeccHHHHHHHHHHHcCCCCCCCce
Q 009251 343 LFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (539)
Q Consensus 343 ~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~gl 377 (539)
.+.|.+-|.|.+.++|..||+.|++.-+.++-|
T Consensus 312 --hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql 344 (382)
T KOG1548|consen 312 --HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQL 344 (382)
T ss_pred --CCCceeEEEeCChHHHHHHHHHhcCeeecceEE
Confidence 126789999999999999999999875544433
No 124
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.021 Score=55.43 Aligned_cols=151 Identities=21% Similarity=0.249 Sum_probs=100.6
Q ss_pred CCCCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCc-------
Q 009251 189 QHGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSS------- 261 (539)
Q Consensus 189 ~~~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~------- 261 (539)
-+.+|..++.+|-++.|.|-|+.+..+- | |+.-|-++ ..|+.|. |.....+||..-+
T Consensus 10 yvGNLP~diRekeieDlFyKyg~i~~ie---L-----K~r~g~pp-fafVeFE-------d~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 10 YVGNLPGDIREKEIEDLFYKYGRIREIE---L-----KNRPGPPP-FAFVEFE-------DPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred EecCCCcchhhccHHHHHhhhcceEEEE---e-----ccCCCCCC-eeEEEec-------CccchhhhhhcccccccCcc
Confidence 4567888999998888888888764332 1 23344333 3455563 5555666776543
Q ss_pred ceEEe--eccc------------------ccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 262 KLVVS--EDGK------------------KIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 262 ~LeVs--edg~------------------kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.|.|. ..+. .-.+.-+.. -...-.|+|.+||...+.++|++..-+.|.|-...+.
T Consensus 74 rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgpps-----rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~ 148 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPS-----RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQ 148 (241)
T ss_pred eEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcc-----cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeee
Confidence 23332 1110 000111111 1123478999999999999999999999999887774
Q ss_pred CCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEeee
Q 009251 322 LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 322 ~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
+ -|...|||...|+++-||.+|+++...-.|+.+.+-..
T Consensus 149 r------------------------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 149 R------------------------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred c------------------------ccceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 3 34799999999999999999999887777776665443
No 125
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.24 E-value=0.0033 Score=69.28 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=67.2
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
...|||++||...++++++|+.+.||.++..+++.+..+ .-+|||||.||.+.....+|++.|
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~-----------------g~skg~af~ey~dpsvtd~A~agL 351 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT-----------------GNSKGFAFCEYCDPSVTDQAIAGL 351 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc-----------------ccccceeeeeeeCCcchhhhhccc
Confidence 347899999999999999999999999999998876432 224999999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..+..+.|-|..+.
T Consensus 352 nGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 352 NGMQLGDKKLVVQRAI 367 (500)
T ss_pred chhhhcCceeEeehhh
Confidence 9998877777665543
No 126
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.10 E-value=0.0038 Score=66.41 Aligned_cols=61 Identities=23% Similarity=0.253 Sum_probs=51.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.++.|-++|||.++++++|.+++..||+|.++.++.- |.-|||||.+++.|..-|..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----------------------knQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----------------------KNQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----------------------chhhhhhhcchhhhhheeec
Confidence 5789999999999999999999999999999988531 44699999999998885554
Q ss_pred HcCC
Q 009251 367 LNDE 370 (539)
Q Consensus 367 Ln~~ 370 (539)
+...
T Consensus 84 y~~~ 87 (492)
T KOG1190|consen 84 YTSV 87 (492)
T ss_pred cccc
Confidence 4433
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.021 Score=62.49 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=49.1
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCccccccc---EEEEEeccHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKL---HAFVEYESVELAE 361 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG---~AFVEFes~E~Ae 361 (539)
..-++.|||++||.+++++.|...|..||.|+. .. |...+ .. ..+-.|| |+|+.|+++....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dW--P~k~~-------~~-----~~~ppkGs~~YvflvFe~E~sV~ 320 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DW--PGKAN-------SR-----GRAPPKGSYGYVFLVFEDERSVQ 320 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ec--CCCcc-------cc-----ccCCCCCcccEEEEEecchHHHH
Confidence 456789999999999999999999999998653 22 21111 11 1122366 9999999988877
Q ss_pred HHHHHH
Q 009251 362 KAIAEL 367 (539)
Q Consensus 362 kAv~~L 367 (539)
+-|...
T Consensus 321 ~Ll~aC 326 (520)
T KOG0129|consen 321 SLLSAC 326 (520)
T ss_pred HHHHHH
Confidence 666544
No 128
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=0.032 Score=61.69 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=44.7
Q ss_pred HHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCc
Q 009251 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSG 376 (539)
Q Consensus 303 e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~g 376 (539)
|+|+.-+++||.|+.|.|-++-. +......-|..||||.+.|++++|.++|+|.++..+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~--------------~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRt 483 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYP--------------DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRT 483 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCC--------------CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcE
Confidence 45666678999999999954410 0022233678999999999999999999998865553
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.37 E-value=0.85 Score=52.00 Aligned_cols=75 Identities=15% Similarity=0.003 Sum_probs=52.7
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeE-EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~-VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
-.|||+.||..+++..+.++|++.-.|+. |.|.+- |.+.+ ++-|||+|..++++.+|+..-
T Consensus 435 ~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-------P~~~~-----------~~~afv~F~~~~a~~~a~~~~ 496 (944)
T KOG4307|consen 435 GALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-------PTDLL-----------RPAAFVAFIHPTAPLTASSVK 496 (944)
T ss_pred ceEEeccCCccccccchhhhhhhhhhhhheeEeccC-------Ccccc-----------cchhhheeccccccchhhhcc
Confidence 47999999999999999999998777766 665331 22222 457999999988888887644
Q ss_pred cCCCCCCCceEEEE
Q 009251 368 NDEGNWRSGLRVRL 381 (539)
Q Consensus 368 n~~~~~~~glrV~l 381 (539)
.......+-|+|+.
T Consensus 497 ~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 497 TKFYPGHRIIRVDS 510 (944)
T ss_pred cccccCceEEEeec
Confidence 43333334455554
No 130
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.34 E-value=0.0078 Score=60.74 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHHHHHhh-cCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEE
Q 009251 302 HQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (539)
Q Consensus 302 ~e~L~e~Fs-~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV 379 (539)
.|+|...|+ +||+|+.+.||.... ..+ .|.+||.|..+|+|++|++.||+.-+.++.|..
T Consensus 82 yEd~f~E~~~kygEiee~~Vc~Nl~----------------~hl--~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~a 142 (260)
T KOG2202|consen 82 YEDVFTELEDKYGEIEELNVCDNLG----------------DHL--VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHA 142 (260)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccc----------------hhh--hhhhhhhcccHHHHHHHHHHHcCccccCCccee
Confidence 345555555 899999998874311 112 788999999999999999999986544444433
No 131
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.19 E-value=0.077 Score=42.85 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=43.1
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcC---CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAV---GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~---G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
.-.|+|+|++ +++.++|+.+|..| .....|..+-| ..|-|.|.+.+.|.+|+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD------------------------tScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD------------------------TSCNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC------------------------CcEEEEECCHHHHHHHH
Confidence 3479999995 47888999999998 13456766543 25899999999999999
Q ss_pred HHH
Q 009251 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
..|
T Consensus 60 ~~L 62 (62)
T PF10309_consen 60 VAL 62 (62)
T ss_pred HcC
Confidence 764
No 132
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.18 E-value=0.13 Score=56.43 Aligned_cols=8 Identities=13% Similarity=0.343 Sum_probs=3.1
Q ss_pred HHHHhhcc
Q 009251 198 IQKVLNQV 205 (539)
Q Consensus 198 ~~kI~kQV 205 (539)
+..|+.||
T Consensus 495 R~~LmaqI 502 (569)
T KOG3671|consen 495 RDALMAQI 502 (569)
T ss_pred HHHHHHHH
Confidence 33343333
No 133
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.11 E-value=0.066 Score=47.19 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=45.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+.|.|=|||.. ....|.+.|++||+|....-+..... + -.....+....+..|.|++..+|++||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~--~--------~~~~~~~~~~NWi~I~Y~~~~~A~rAL~- 72 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSS--G--------INPYPIPSGGNWIHITYDNPLSAQRALQ- 72 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG--------------------E-CCTTEEEEEESSHHHHHHHHT-
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccccccc--c--------cccccCCCCCCEEEEECCCHHHHHHHHH-
Confidence 4567888899988 56678899999999977651110000 0 0000112336789999999999999997
Q ss_pred HcCCCC
Q 009251 367 LNDEGN 372 (539)
Q Consensus 367 Ln~~~~ 372 (539)
.|+..+
T Consensus 73 ~NG~i~ 78 (100)
T PF05172_consen 73 KNGTIF 78 (100)
T ss_dssp TTTEEE
T ss_pred hCCeEE
Confidence 676653
No 134
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=94.91 E-value=0.092 Score=55.69 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=59.6
Q ss_pred cceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
+.+.+.|.+|..+ +.-+-|-.+|-.||.|.+|++++-+ .|.|.||+-+.++.++||.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~v~ 343 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERAVT 343 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHHHH
Confidence 3567889999865 5678899999999999999986421 4689999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 009251 366 ELNDEGNWRSGLRVRL 381 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l 381 (539)
.||+..+++..|.|.+
T Consensus 344 hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 344 HLNNIPLFGGKLNVCV 359 (494)
T ss_pred HhccCccccceEEEee
Confidence 9999887665555443
No 135
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.88 E-value=0.016 Score=58.56 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=57.8
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccE--EEEEeccHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH--AFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~--AFVEFes~E~AekAv~ 365 (539)
.-.||+.+||..+...-|++||+.||.|-+|-+-....+-. ....|.++.. .+.| +.|||.+...|+++.+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~--~~r~~~~~n~-----~~~y~EGWvEF~~KrvAK~iAe 146 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKR--AARKRKGGNY-----KKLYSEGWVEFISKRVAKRIAE 146 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHH--HHHhhcCCCc-----cccchhHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999998743211100 0000111111 1222 7899999999999999
Q ss_pred HHcCCCCCCC
Q 009251 366 ELNDEGNWRS 375 (539)
Q Consensus 366 ~Ln~~~~~~~ 375 (539)
.||+..+.++
T Consensus 147 ~Lnn~~Iggk 156 (278)
T KOG3152|consen 147 LLNNTPIGGK 156 (278)
T ss_pred HhCCCccCCC
Confidence 9999876654
No 136
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=94.83 E-value=0.018 Score=67.50 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=48.5
Q ss_pred hcCCCCCceecccccchhhHHHhhhcHHHHHHhhhc-CcceEEeecccccccCCC
Q 009251 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-SSKLVVSEDGKKIKRQNP 277 (539)
Q Consensus 224 i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~-S~~LeVsedg~kVRRk~P 277 (539)
+.-|.||||-|.+||+.-.|--|..+.+.|..||.+ |++|+|+.||.|||.+--
T Consensus 471 v~pDaeGWVYLNLL~NmAQLHiiNVTPdFVRsAV~E~StKfQLSpDGrKIRWRGG 525 (989)
T PF09421_consen 471 VHPDAEGWVYLNLLCNMAQLHIINVTPDFVRSAVSEKSTKFQLSPDGRKIRWRGG 525 (989)
T ss_pred cCcccccceehHHHHHHHHHHhhccCHHHHHHHHHhcccceeeCCCCCeeeecCC
Confidence 345789999999999999999999999999999875 889999999999998763
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.72 E-value=0.14 Score=56.23 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=52.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhh-cCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs-~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..|||||++||.-++-++|..||+ -||-|..|-|-.|. + .| -.||-+=|+|.+..+-.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~----------k-~K------YPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP----------K-LK------YPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc----------c-cC------CCCCcceeeecccHHHHHHHh
Confidence 358999999999999999999999 59999999993331 1 11 138899999999999999987
Q ss_pred H
Q 009251 366 E 366 (539)
Q Consensus 366 ~ 366 (539)
.
T Consensus 432 a 432 (520)
T KOG0129|consen 432 A 432 (520)
T ss_pred h
Confidence 3
No 138
>PF12901 SUZ-C: SUZ-C motif; InterPro: IPR024642 The SUZ-C domain is a conserved motif found in one or more copies in several RNA-binding proteins []. It is always found at the C terminus of the protein and appears to be required for localization of the protein to specific subcellular structures. The domain was first characterised in the C.elegans protein SZY-20 which localizes to the centrosome. This domain is widely distributed in eukaryotes.
Probab=94.63 E-value=0.017 Score=41.14 Aligned_cols=15 Identities=60% Similarity=0.970 Sum_probs=13.6
Q ss_pred CCCCCCCCccccccC
Q 009251 516 GPRMPDGTRGFAMGR 530 (539)
Q Consensus 516 gprmpdgtrgf~~gr 530 (539)
+||+||||+||.|-|
T Consensus 20 ~P~gPd~~~gf~~~R 34 (34)
T PF12901_consen 20 QPRGPDGTWGFQQRR 34 (34)
T ss_pred cCCCCCCCccccccC
Confidence 789999999999876
No 139
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.52 E-value=0.11 Score=48.83 Aligned_cols=59 Identities=20% Similarity=0.205 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009251 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 303 e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
.+|.+.|..||+|..||+.. +.-+|+|.+-+.|-+|+. |++.++.++-|+|++.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 47888999999999999853 247899999999999997 9998887777777775
Q ss_pred eecCC
Q 009251 383 LRRGS 387 (539)
Q Consensus 383 ~~~~~ 387 (539)
.....
T Consensus 105 tpdW~ 109 (146)
T PF08952_consen 105 TPDWL 109 (146)
T ss_dssp -----
T ss_pred CccHH
Confidence 54433
No 140
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.27 E-value=0.03 Score=64.40 Aligned_cols=77 Identities=22% Similarity=0.271 Sum_probs=61.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
...|+|+|+|+..|.++|+.+|+++|.++.+++.. .|.+| .||-|||+|.++.+|.+++...
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt-----------~r~gk-------pkg~a~v~y~~ea~~s~~~~s~ 797 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVT-----------VRAGK-------PKGKARVDYNTEADASRKVASV 797 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhh-----------hhccc-------cccceeccCCCcchhhhhcccc
Confidence 34799999999999999999999999999998743 23344 3788999999999999999877
Q ss_pred cCCCCCCCceEEEEe
Q 009251 368 NDEGNWRSGLRVRLM 382 (539)
Q Consensus 368 n~~~~~~~glrV~l~ 382 (539)
+...+-.+++.|.+-
T Consensus 798 d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 798 DVAGKRENNGEVQVS 812 (881)
T ss_pred hhhhhhhcCcccccc
Confidence 655544455555553
No 141
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=94.20 E-value=0.028 Score=34.49 Aligned_cols=16 Identities=56% Similarity=0.916 Sum_probs=12.5
Q ss_pred CcccccCCCCCCCCCC
Q 009251 36 SFSRLNAKAPEFVPTR 51 (539)
Q Consensus 36 ~~~~~~~~~p~~~p~~ 51 (539)
..|+||..|+||||+.
T Consensus 2 ~~s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 2 KSSKLNPNAPEFVPSS 17 (18)
T ss_dssp -SSSSSTTSSSS-TTT
T ss_pred cccccCCCCccccCCC
Confidence 4689999999999974
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.12 E-value=0.13 Score=54.11 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=54.9
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCC--eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~--V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.-.+||+||-+.+|.+||.+.....|- |..+++... | ....+||||+|...+..+.++-++
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFEN-----------R------~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFEN-----------R------TNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhc-----------c------cCCcccceEEEEecchHHHHHHHH
Confidence 347999999999999999888877663 344443221 2 122359999999999999999999
Q ss_pred HHcCCCCCCCceEE
Q 009251 366 ELNDEGNWRSGLRV 379 (539)
Q Consensus 366 ~Ln~~~~~~~glrV 379 (539)
.|-.+.+.+..-.|
T Consensus 143 iLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTV 156 (498)
T ss_pred hcccceecCCCCee
Confidence 88777766665433
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.04 E-value=0.13 Score=54.77 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=43.9
Q ss_pred eeEEeecCCCcccHHHHHHHhh-----cCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFS-----AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs-----~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
-+|-.++||+|++..++.+||. .-|.+.-+-|.++. + ...|-|||.|..+|+|++|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd------------g-------rpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD------------G-------RPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC------------C-------CcccceEEEecCHHHHHHH
Confidence 3566789999999999999997 33444444554431 1 1256799999999999999
Q ss_pred HHH
Q 009251 364 IAE 366 (539)
Q Consensus 364 v~~ 366 (539)
+.+
T Consensus 223 L~k 225 (508)
T KOG1365|consen 223 LRK 225 (508)
T ss_pred HHH
Confidence 874
No 144
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.76 E-value=0.27 Score=46.05 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=47.2
Q ss_pred ccceeEEeecCCCccc----HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 286 LQSRIVVAENLPEDHC----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t----~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
..-.||+|+-|..++. ..+|....+.||.|.+|.+|- +-.|.|.|++..+|=
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------------------------rqsavVvF~d~~SAC 139 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------------------------RQSAVVVFKDITSAC 139 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------------------------CceEEEEehhhHHHH
Confidence 3456999988877653 334555678899999999862 446999999999999
Q ss_pred HHHHHHcC
Q 009251 362 KAIAELND 369 (539)
Q Consensus 362 kAv~~Ln~ 369 (539)
+||.++..
T Consensus 140 ~Av~Af~s 147 (166)
T PF15023_consen 140 KAVSAFQS 147 (166)
T ss_pred HHHHhhcC
Confidence 99998875
No 145
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.30 E-value=0.049 Score=60.58 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=54.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhh-cCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFS-AVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs-~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+..|||.||=.-+|.-.|++++. .+|.|...+| |+ + |.+|||.|.++++|-....
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk-------------------I--KShCyV~yss~eEA~atr~ 499 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK-------------------I--KSHCYVSYSSVEEAAATRE 499 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH-------------------h--hcceeEecccHHHHHHHHH
Confidence 467899999999999999999999 5888888866 31 1 6789999999999999999
Q ss_pred HHcCCCCCCC
Q 009251 366 ELNDEGNWRS 375 (539)
Q Consensus 366 ~Ln~~~~~~~ 375 (539)
.|++. .|..
T Consensus 500 AlhnV-~WP~ 508 (718)
T KOG2416|consen 500 ALHNV-QWPP 508 (718)
T ss_pred HHhcc-ccCC
Confidence 99985 4654
No 146
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.09 E-value=0.038 Score=57.81 Aligned_cols=80 Identities=21% Similarity=0.345 Sum_probs=55.5
Q ss_pred hccceeEEeecCCCcccHHHH---HHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNL---MKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L---~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
.++..-+||-+|+.+.-.+++ .+.|.+||.|..|.+..+.. .....+ +-..+||+|+.+|+|.
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S----------~~s~~~----~~~s~yITy~~~eda~ 139 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS----------SSSSSG----GTCSVYITYEEEEDAD 139 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc----------cccCCC----CCCcccccccchHhhh
Confidence 345667899999977655544 35899999999999855321 011111 1234999999999999
Q ss_pred HHHHHHcCCCCCCCceE
Q 009251 362 KAIAELNDEGNWRSGLR 378 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glr 378 (539)
.||...++..+.++-++
T Consensus 140 rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 140 RCIDDVDGFVDDGRALK 156 (327)
T ss_pred hHHHHhhhHHhhhhhhH
Confidence 99998887765555433
No 147
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=92.66 E-value=0.39 Score=51.11 Aligned_cols=74 Identities=26% Similarity=0.338 Sum_probs=56.2
Q ss_pred cceeEEeecC--CCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENL--PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nL--P~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....|++.=| =+-+|.+-|-.|...+|.|.+|-|.+. +-.-|.|||++.+.|++|-
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----------------------ngVQAmVEFdsv~~AqrAk 176 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----------------------NGVQAMVEFDSVEVAQRAK 176 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----------------------cceeeEEeechhHHHHHHH
Confidence 3445555444 356788999999999999999998642 1235999999999999999
Q ss_pred HHHcCCCCCCC--ceEEEEe
Q 009251 365 AELNDEGNWRS--GLRVRLM 382 (539)
Q Consensus 365 ~~Ln~~~~~~~--glrV~l~ 382 (539)
+.||+..++.. .|+|.++
T Consensus 177 ~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 177 AALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred hhcccccccccceeEEEEec
Confidence 99999987765 3455443
No 148
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.63 E-value=0.072 Score=61.40 Aligned_cols=74 Identities=24% Similarity=0.183 Sum_probs=60.7
Q ss_pred EEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCC
Q 009251 291 VVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 291 VyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~ 370 (539)
.++.|..-..+...|-.+|+.||+|++++.+++ -..|.|+|.+.|.|..|++.|.++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----------------------~N~alvs~~s~~sai~a~dAl~gk 357 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----------------------LNMALVSFSSVESAILALDALQGK 357 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc-----------------------ccchhhhhHHHHHHHHhhhhhcCC
Confidence 455666667788889999999999999999765 236999999999999999999999
Q ss_pred CCCCCceEEEEeeecCC
Q 009251 371 GNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 371 ~~~~~glrV~l~~~~~~ 387 (539)
+....|+-+++...+..
T Consensus 358 evs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 358 EVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred cccccCCceeEEecccc
Confidence 88777877777665433
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.54 E-value=0.011 Score=67.87 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=53.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+..++||+||+..++.++|...|+.+|.|..|+|..-.. . ..| +|.|||+|...++|.+||..
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n--------------~-~~~--rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN--------------E-KRF--RGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh--------------c-ccc--ccceeeEeecCCchhhhhhh
Confidence 456899999999999999999999999999988852111 1 223 78999999999999999985
Q ss_pred HcC
Q 009251 367 LND 369 (539)
Q Consensus 367 Ln~ 369 (539)
.+.
T Consensus 729 ~d~ 731 (881)
T KOG0128|consen 729 RDS 731 (881)
T ss_pred hhh
Confidence 443
No 150
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.44 E-value=0.64 Score=53.33 Aligned_cols=36 Identities=8% Similarity=0.159 Sum_probs=26.5
Q ss_pred ccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 347 KLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 347 KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
..|.|||.... .|++.++.|++..+.++.+.|.++.
T Consensus 526 ~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 526 ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CCceEEEcChh-hHHHHHHHhccccccCCceEEEECC
Confidence 45899998865 5888999998776666666666553
No 151
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.03 E-value=0.17 Score=53.83 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=49.9
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCC-eeE--EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGS-VKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~-V~~--VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-.|-.++||++++.|+|..||+.|-. |+. |.|.... +....|-|||+|.++|+|..|..
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~------------------qGrPSGeAFIqm~nae~a~aaaq 342 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG------------------QGRPSGEAFIQMRNAERARAAAQ 342 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC------------------CCCcChhhhhhhhhhHHHHHHHH
Confidence 37889999999999999999999863 444 5554431 12236789999999999999988
Q ss_pred HHcCCC
Q 009251 366 ELNDEG 371 (539)
Q Consensus 366 ~Ln~~~ 371 (539)
...++.
T Consensus 343 k~hk~~ 348 (508)
T KOG1365|consen 343 KCHKKL 348 (508)
T ss_pred HHHHhh
Confidence 766544
No 152
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.01 E-value=0.038 Score=63.91 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=63.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...+|||++||+.++++.+|+-.|..+|.|..|+|-.+.. +. ..-|+||.|.+.+.+-+|..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------~~------esa~~f~~~~n~dmtp~ak~ 431 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------KT------ESAYAFVSLLNTDMTPSAKF 431 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------Cc------ccchhhhhhhccccCcccch
Confidence 4578999999999999999999999999999999965421 00 13479999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
++.+..+...++++.+-
T Consensus 432 e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 432 EESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhcCCccccCccccccc
Confidence 99887766655555443
No 153
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.88 E-value=0.58 Score=40.13 Aligned_cols=64 Identities=19% Similarity=0.313 Sum_probs=44.5
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
-||--.||.+....||.++|+.||.|.--.| . ...|||.....+.|..|+..++.
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~VsWi-~------------------------dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIYVSWI-N------------------------DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEEEEEE-C------------------------TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEEEEEE-c------------------------CCcEEEEeecHHHHHHHHHHhcc
Confidence 3444449999999999999999999854444 2 23699999999999999998863
Q ss_pred CCCCCCceEEEEe
Q 009251 370 EGNWRSGLRVRLM 382 (539)
Q Consensus 370 ~~~~~~glrV~l~ 382 (539)
....+|...
T Consensus 65 ----~~~y~i~tY 73 (87)
T PF08675_consen 65 ----NSSYRIQTY 73 (87)
T ss_dssp -----SSSEEEEH
T ss_pred ----CCceEEEEH
Confidence 234566543
No 154
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.69 E-value=0.2 Score=52.77 Aligned_cols=7 Identities=29% Similarity=0.524 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 009251 304 NLMKIFS 310 (539)
Q Consensus 304 ~L~e~Fs 310 (539)
+|.++|+
T Consensus 244 ei~~~~~ 250 (465)
T KOG3973|consen 244 EIQSILS 250 (465)
T ss_pred HHHHHHH
Confidence 4444443
No 155
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.48 E-value=0.055 Score=60.72 Aligned_cols=6 Identities=50% Similarity=0.844 Sum_probs=2.2
Q ss_pred HHHHHH
Q 009251 196 ESIQKV 201 (539)
Q Consensus 196 e~~~kI 201 (539)
+.+++|
T Consensus 240 e~Idrl 245 (556)
T PF05918_consen 240 ESIDRL 245 (556)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 156
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=91.13 E-value=0.25 Score=52.74 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=54.0
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
..|-|.||...+|.+.++.||.-.|+|..++|. |..-...+|.. .-.|||-|.+...+.-|-- |.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~-------------sRtcyVkf~d~~sv~vaQh-Lt 72 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVI-------------SRTCYVKFLDSQSVTVAQH-LT 72 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcce-------------eeeEEEeccCCcceeHHhh-hc
Confidence 478899999999999999999999999999984 43322233322 2359999999877766543 55
Q ss_pred CCCCCCCceEE
Q 009251 369 DEGNWRSGLRV 379 (539)
Q Consensus 369 ~~~~~~~glrV 379 (539)
+..+.+.-|.|
T Consensus 73 ntvfvdraliv 83 (479)
T KOG4676|consen 73 NTVFVDRALIV 83 (479)
T ss_pred cceeeeeeEEE
Confidence 55544444443
No 157
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.55 E-value=0.54 Score=48.70 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCC
Q 009251 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 302 ~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~ 375 (539)
++++++-.++||.|.+|-|.-.- +.|.+. -.-.||||+..++|.||+-.||+..+.++
T Consensus 300 ede~keEceKyg~V~~viifeip----~~p~de------------avRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIP----SQPEDE------------AVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecC----CCccch------------hheeeeeeccHHHHHHHHHhcCCceecce
Confidence 45788899999999998875431 112111 12489999999999999999998775443
No 158
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.98 E-value=2 Score=38.51 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.9
Q ss_pred eEEeecCCCcccHHHHHHHhhcC-CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~-G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.+.+-..|.-++.++|..+.+.+ ..|..+||+++... ++=.+.+.|.+.++|....+.+|
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-------------------nrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-------------------NRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-------------------ceEEEEEEECCHHHHHHHHHHhC
Confidence 44444555566677787666665 46788999876432 13469999999999999999999
Q ss_pred CCCC
Q 009251 369 DEGN 372 (539)
Q Consensus 369 ~~~~ 372 (539)
|+.+
T Consensus 76 Gk~F 79 (110)
T PF07576_consen 76 GKPF 79 (110)
T ss_pred CCcc
Confidence 8764
No 159
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=89.91 E-value=0.4 Score=55.89 Aligned_cols=74 Identities=20% Similarity=0.186 Sum_probs=61.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+-++|++|...+....|...|..||.|..|.+.+- .-||||.|++...|+.|+..
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhHHH
Confidence 4567999999999999999999999999999887431 34899999999999999999
Q ss_pred HcCCCCCCCc--eEEEEee
Q 009251 367 LNDEGNWRSG--LRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~g--lrV~l~~ 383 (539)
|.+..+.... ++|.++.
T Consensus 511 ~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred HhcCcCCCCCccccccccc
Confidence 9988766543 5555543
No 160
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=89.66 E-value=0.42 Score=48.64 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=51.6
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
..|||.||..-++.|.|..-|+.||.|...-++-|. |. + ..+-.+|+|...-.|.+|+..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~----------r~-k-------~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD----------RG-K-------PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc----------cc-c-------ccccchhhhhcchhHHHHHHHhc
Confidence 589999999999999999999999999877665442 11 1 12347999999999999999876
Q ss_pred CC
Q 009251 369 DE 370 (539)
Q Consensus 369 ~~ 370 (539)
..
T Consensus 94 ~~ 95 (275)
T KOG0115|consen 94 EG 95 (275)
T ss_pred cC
Confidence 44
No 161
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.82 E-value=0.65 Score=44.89 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=44.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhc-CCCe---eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSV---KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~-~G~V---~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
....|+|++||.++|++++.+.++. ++.. ..+.-..+... .+. .. -.-|||.|.+.+++..
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~----------~~~--~~---~SRaYi~F~~~~~~~~ 70 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKS----------FKP--PT---YSRAYINFKNPEDLLE 70 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SS----------STT--S-----EEEEEEESSCHHHHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCcc----------CCC--Cc---ceEEEEEeCCHHHHHH
Confidence 3458999999999999999997776 6665 44442222211 110 00 2349999999999999
Q ss_pred HHHHHcCCC
Q 009251 363 AIAELNDEG 371 (539)
Q Consensus 363 Av~~Ln~~~ 371 (539)
.++.+++..
T Consensus 71 F~~~~~g~~ 79 (176)
T PF03467_consen 71 FRDRFDGHV 79 (176)
T ss_dssp HHHHCTTEE
T ss_pred HHHhcCCcE
Confidence 999988743
No 162
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=87.68 E-value=2.2 Score=49.34 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=7.5
Q ss_pred CCChHHHHHHhhcc
Q 009251 192 GLNDESIQKVLNQV 205 (539)
Q Consensus 192 ~ls~e~~~kI~kQV 205 (539)
.+.+.+.++|++++
T Consensus 388 vf~~~~De~Il~~l 401 (830)
T KOG1923|consen 388 VFHELNDEKILEAL 401 (830)
T ss_pred hhhhhhHHHHHHhh
Confidence 34445556666654
No 163
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.22 E-value=0.3 Score=53.36 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccceeEEeecCCCcc-cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~-t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
.+.++|-++-.+... +.++|...|.+||+|..|.|.+. -..|.|+|.+.-+|-+|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 456777777777765 67999999999999999998543 236999999999997777
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
. ..+..+..+-|+|.+.+.
T Consensus 427 ~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 A-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred c-cccceecCceeEEEEecC
Confidence 5 455555566688877654
No 164
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=86.47 E-value=2.8 Score=48.50 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=4.6
Q ss_pred EeecCCCc
Q 009251 292 VAENLPED 299 (539)
Q Consensus 292 yV~nLP~d 299 (539)
|+.||++.
T Consensus 532 ~m~nF~ds 539 (830)
T KOG1923|consen 532 FMGNFPDS 539 (830)
T ss_pred HHHhchhh
Confidence 55666654
No 165
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=82.24 E-value=1.1 Score=49.43 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=6.5
Q ss_pred HHHHHhhcCC
Q 009251 304 NLMKIFSAVG 313 (539)
Q Consensus 304 ~L~e~Fs~~G 313 (539)
+|..+|+.-|
T Consensus 741 eldnvfsagg 750 (990)
T KOG1819|consen 741 ELDNVFSAGG 750 (990)
T ss_pred chhhhhccCC
Confidence 5777777544
No 166
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=81.71 E-value=0.73 Score=50.66 Aligned_cols=7 Identities=29% Similarity=0.473 Sum_probs=3.3
Q ss_pred CCChHHH
Q 009251 192 GLNDESI 198 (539)
Q Consensus 192 ~ls~e~~ 198 (539)
.+++++.
T Consensus 634 slsddvs 640 (990)
T KOG1819|consen 634 SLSDDVS 640 (990)
T ss_pred cccchhH
Confidence 4455543
No 167
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.45 E-value=0.34 Score=51.83 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=49.9
Q ss_pred hhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
++++. |||+|.+|..++...++.++|..+|+|...++.. +. .+.+|-|+|........
T Consensus 147 leeir-Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---------------k~------~s~~c~~sf~~qts~~h 204 (479)
T KOG4676|consen 147 LEEIR-RTREVQSLISAAILPESGESFERKGEVSYAHTAS---------------KS------RSSSCSHSFRKQTSSKH 204 (479)
T ss_pred hHHHH-hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---------------cC------CCcchhhhHhhhhhHHH
Confidence 34444 8999999999999999999999999999888731 11 14567799998888888
Q ss_pred HHHHH
Q 009251 363 AIAEL 367 (539)
Q Consensus 363 Av~~L 367 (539)
|+...
T Consensus 205 alr~~ 209 (479)
T KOG4676|consen 205 ALRSH 209 (479)
T ss_pred HHHhc
Confidence 88743
No 168
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=4.2 Score=45.79 Aligned_cols=91 Identities=21% Similarity=0.266 Sum_probs=62.2
Q ss_pred cceeEEeecCCCc-ccHHHHHHHhhcC----CCeeEEEEeCCCCCCCC--------CC-------C--------C-----
Q 009251 287 QSRIVVAENLPED-HCHQNLMKIFSAV----GSVKTIRTCLPQTSGGG--------AS-------S--------G----- 333 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~~----G~V~~VrI~~p~~~~~~--------~p-------~--------~----- 333 (539)
..+.|-|.|+.++ +..++|.-+|+.| |.|.+|.|+ |..-|+. .| . +
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY-pSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY-PSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec-hhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4578999999997 4678999999987 699999996 3222211 11 0 0
Q ss_pred ------CccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEE
Q 009251 334 ------SRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 334 ------~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l 381 (539)
+|.+-.. .+ --=||.|+|++.+.|.+.++..+|.++...++.+.|
T Consensus 252 ~~~~~kLR~Yq~~-rL--kYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 252 DVDREKLRQYQLN-RL--KYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hHHHHHHHHHHhh-hh--eeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0100000 00 013699999999999999999999988888776654
No 169
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.79 E-value=1.4 Score=47.70 Aligned_cols=59 Identities=24% Similarity=0.341 Sum_probs=45.0
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
.+|++||.+..+..+|+.+|... .+ +.. |..+--.|||||++.+...|.+|++.|++
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~--~~~---------------g~fl~k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KI--PGS---------------GQFLVKSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cC--CCC---------------cceeeecceeeccCCchhhhhhhHHhhch
Confidence 57999999999999999999764 11 100 01111268999999999999999999987
Q ss_pred CC
Q 009251 370 EG 371 (539)
Q Consensus 370 ~~ 371 (539)
+.
T Consensus 60 k~ 61 (584)
T KOG2193|consen 60 KV 61 (584)
T ss_pred hh
Confidence 63
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=80.60 E-value=3.6 Score=45.01 Aligned_cols=67 Identities=13% Similarity=0.231 Sum_probs=56.1
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcC-CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~-G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+.+|.|-.+|..+|.-||..|...| -.|..|+|+++..+ |+=.++|.|.+.++|..+.++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-------------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-------------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-------------------ceEEEEEEeccchhHHHHHHH
Confidence 6789999999999999999998775 46899999886432 133699999999999999999
Q ss_pred HcCCCCC
Q 009251 367 LNDEGNW 373 (539)
Q Consensus 367 Ln~~~~~ 373 (539)
+||..+.
T Consensus 135 fNGk~Fn 141 (493)
T KOG0804|consen 135 FNGKQFN 141 (493)
T ss_pred cCCCcCC
Confidence 9998644
No 171
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.21 E-value=3.5 Score=40.22 Aligned_cols=59 Identities=22% Similarity=0.111 Sum_probs=39.6
Q ss_pred cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc--CCCCCCCceE
Q 009251 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN--DEGNWRSGLR 378 (539)
Q Consensus 301 t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln--~~~~~~~glr 378 (539)
..+.|+++|..|+.+..+.++.- -+-..|.|.+.++|.+|...|+ +..+.+.-++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----------------------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----------------------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----------------------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----------------------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 45789999999999888877521 1238999999999999999888 5554444456
Q ss_pred EEEe
Q 009251 379 VRLM 382 (539)
Q Consensus 379 V~l~ 382 (539)
|++.
T Consensus 65 ~yf~ 68 (184)
T PF04847_consen 65 VYFG 68 (184)
T ss_dssp EE--
T ss_pred EEEc
Confidence 6554
No 172
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=76.72 E-value=1.5 Score=42.74 Aligned_cols=52 Identities=17% Similarity=0.426 Sum_probs=33.1
Q ss_pred cCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcc--eEEe---ecccccccCC
Q 009251 225 LKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDGKKIKRQN 276 (539)
Q Consensus 225 ~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~--LeVs---edg~kVRRk~ 276 (539)
.+|++|||+++.|+...+++.+.-+.+.|.++++++.+ .++. .++.+||-..
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K~Rfel~~~~~~~~~IRA~q 82 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDKQRFELRYEDPGGWRIRANQ 82 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS--EEEE-----TTEEEESS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCCCCeeEEcccccCceEEECC
Confidence 47899999999999999998777678888888887654 5666 5567787654
No 173
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=73.25 E-value=2 Score=44.70 Aligned_cols=75 Identities=15% Similarity=-0.035 Sum_probs=56.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+++|++++-+.+.+.++..+|.++|.+...++..-. ..+..|++++|.|+..+.+..|+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~-----------------~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLE-----------------DSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhc-----------------cccccccceeeccccHHHHHHHHHh
Confidence 36789999999999999999999999987666653321 1234589999999999999999985
Q ss_pred HcCCCCCCCceE
Q 009251 367 LNDEGNWRSGLR 378 (539)
Q Consensus 367 Ln~~~~~~~glr 378 (539)
.....+..+.+.
T Consensus 150 s~~~~~~~~~~~ 161 (285)
T KOG4210|consen 150 SGSKVLDGNKGE 161 (285)
T ss_pred hhcccccccccc
Confidence 544444444333
No 174
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.25 E-value=9.5 Score=39.96 Aligned_cols=62 Identities=24% Similarity=0.257 Sum_probs=44.5
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+.-|-|=+|+.... .-|..+|++||+|..+-. ++ +-.+-+|.|.+.-+|.|||. .
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~--~~---------------------ngNwMhirYssr~~A~KALs-k 251 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT--PS---------------------NGNWMHIRYSSRTHAQKALS-K 251 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeec--CC---------------------CCceEEEEecchhHHHHhhh-h
Confidence 44566668876543 457788999999987754 11 13478999999999999997 5
Q ss_pred cCCCCCC
Q 009251 368 NDEGNWR 374 (539)
Q Consensus 368 n~~~~~~ 374 (539)
|+..+.+
T Consensus 252 ng~ii~g 258 (350)
T KOG4285|consen 252 NGTIIDG 258 (350)
T ss_pred cCeeecc
Confidence 6665444
No 175
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=73.11 E-value=2.4 Score=50.90 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=5.0
Q ss_pred HHHHhhhcCcce
Q 009251 252 HLASVLRKSSKL 263 (539)
Q Consensus 252 ~I~~ALr~S~~L 263 (539)
-|.+-+.+|..|
T Consensus 225 ~v~dw~y~sr~l 236 (2365)
T COG5178 225 HVRDWVYTSRDL 236 (2365)
T ss_pred HHHHHHhhcccc
Confidence 344444444433
No 176
>KOG2278 consensus RNA:NAD 2'-phosphotransferase TPT1 [Translation, ribosomal structure and biogenesis]
Probab=72.52 E-value=2.1 Score=41.35 Aligned_cols=39 Identities=10% Similarity=0.416 Sum_probs=34.5
Q ss_pred hcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcc
Q 009251 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK 262 (539)
Q Consensus 224 i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~ 262 (539)
+.+++||||+++.+++.++.+.+..++++|..+++..++
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~ndK 65 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRNDK 65 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhcccc
Confidence 467899999999999999999999889999999887654
No 177
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=72.40 E-value=2.3 Score=48.34 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=57.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..-||||+|+-..+..+-++.+...||-|.+..++ + |+|.+|...+.+..|+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------------------------~-fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------------------------K-FGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------------------------h-hcccchhhHHHHHHHHHH
Confidence 34599999999999999999999999998776541 2 799999999999999998
Q ss_pred HcCCCCCCCceEEEE
Q 009251 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (539)
|+.-.+.++++.+.+
T Consensus 93 ~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 93 LTELNIDDQKLIENV 107 (668)
T ss_pred hcccCCCcchhhccc
Confidence 887776666665554
No 178
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=71.65 E-value=2.6 Score=40.94 Aligned_cols=82 Identities=21% Similarity=0.351 Sum_probs=49.8
Q ss_pred hcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcc--eEEeecccccccCCC--Cc-chhh-hhccceeEEeecCC
Q 009251 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVSEDGKKIKRQNP--LT-ESDL-EELQSRIVVAENLP 297 (539)
Q Consensus 224 i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~--LeVsedg~kVRRk~P--l~-e~~~-~e~~~rTVyV~nLP 297 (539)
+.+|++|||+|+.|+...+.+....+.+.|.+++.++++ .+++ +.+||-..- +. +.+. +.....+||
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l~--~~~IRA~qGHSi~v~~~~~~~~~P~~ly----- 98 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEIS--GDRIRARQGHSVDVDLDLEEDTPPAVLY----- 98 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEec--CceEEeccCcCCccccCCccCCCCceeE-----
Confidence 457999999999999876654333477888888887765 4554 556766531 21 1000 111112333
Q ss_pred CcccHHHHHHHhhcCC
Q 009251 298 EDHCHQNLMKIFSAVG 313 (539)
Q Consensus 298 ~d~t~e~L~e~Fs~~G 313 (539)
..+..+.+..|++. |
T Consensus 99 HGT~~~~~~~I~~~-G 113 (179)
T PRK00819 99 HGTSSEELDSILEE-G 113 (179)
T ss_pred eCCCHHHHHHHHHh-C
Confidence 23567888888764 5
No 179
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=69.31 E-value=32 Score=37.74 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=5.6
Q ss_pred CCCChHHHHHHhhc
Q 009251 191 GGLNDESIQKVLNQ 204 (539)
Q Consensus 191 ~~ls~e~~~kI~kQ 204 (539)
+..-.+.+..|+++
T Consensus 449 lP~~sDaRsdLL~a 462 (518)
T KOG1830|consen 449 LPPISDARSDLLAA 462 (518)
T ss_pred CCCCCchHHHHHHH
Confidence 33333344444443
No 180
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=67.84 E-value=2 Score=44.35 Aligned_cols=72 Identities=21% Similarity=0.385 Sum_probs=45.8
Q ss_pred eeEEeecCCCc------------ccHHHHHHHhhcCCCeeEEEE--eCCCCCCCCCCCCCc-cccccCcccccccE----
Q 009251 289 RIVVAENLPED------------HCHQNLMKIFSAVGSVKTIRT--CLPQTSGGGASSGSR-SAKSEGMLFSNKLH---- 349 (539)
Q Consensus 289 rTVyV~nLP~d------------~t~e~L~e~Fs~~G~V~~VrI--~~p~~~~~~~p~~~R-s~K~~g~~~~~KG~---- 349 (539)
-|||+.+||-. .+++-|...|+.||+|.+|.| |.|-. .+ .+|+.|..| +||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr--------~~mn~kisgiq~--~gfg~g~ 219 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLR--------EEMNGKISGIQF--HGFGFGG 219 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhH--------HHhcCcccccee--eccccCc
Confidence 48999888832 356789999999999998875 33311 11 344444444 333
Q ss_pred -----EEEEeccHHHHHHHHHHHcCC
Q 009251 350 -----AFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 350 -----AFVEFes~E~AekAv~~Ln~~ 370 (539)
|||.|-.--....|+..|.+-
T Consensus 220 dlffeayvqfmeykgfa~amdalr~~ 245 (445)
T KOG2891|consen 220 DLFFEAYVQFMEYKGFAQAMDALRGM 245 (445)
T ss_pred chhHHHHHHHHHHHhHHHHHHHHhcc
Confidence 566666666666677666653
No 181
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=63.12 E-value=13 Score=47.26 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=4.4
Q ss_pred ecccccchhh
Q 009251 233 PISTVASFKK 242 (539)
Q Consensus 233 pi~~i~sFkK 242 (539)
-+-+++.|-+
T Consensus 1808 ~~GVmaGYgn 1817 (2039)
T PRK15319 1808 TVGVMASYIN 1817 (2039)
T ss_pred EEEEEEEecc
Confidence 3444444443
No 182
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=62.28 E-value=33 Score=28.13 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=33.2
Q ss_pred cccHHHHHHHhhcCCC-----eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCC
Q 009251 299 DHCHQNLMKIFSAVGS-----VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNW 373 (539)
Q Consensus 299 d~t~e~L~e~Fs~~G~-----V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~ 373 (539)
.++..+|..++...+. |-.|+|. ..|+|||-... .|+++++.|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-------------------------~~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-------------------------DNFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE--------------------------SS-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-------------------------eeEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 4566777777776543 5667763 34899999875 789999999988877
Q ss_pred CCceEEEE
Q 009251 374 RSGLRVRL 381 (539)
Q Consensus 374 ~~glrV~l 381 (539)
++.++|++
T Consensus 66 gk~v~ve~ 73 (74)
T PF03880_consen 66 GKKVRVER 73 (74)
T ss_dssp S----EEE
T ss_pred CeeEEEEE
Confidence 77676664
No 183
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=60.84 E-value=13 Score=41.73 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.1
Q ss_pred ccccEEEEEeccHHHHHHHHHHHcCCCCCCC
Q 009251 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 345 ~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~ 375 (539)
.|.|||||.|.+.+++..++++++++. |.+
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~-W~~ 458 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKK-WEK 458 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCc-hhh
Confidence 457999999999999999999999864 654
No 184
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=58.18 E-value=43 Score=37.81 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.4
Q ss_pred CCCcccccc
Q 009251 107 TGAFHVIPV 115 (539)
Q Consensus 107 ~~~~~~~~~ 115 (539)
+++..|+||
T Consensus 258 p~~~~ViPI 266 (582)
T PF03276_consen 258 PPPQPVIPI 266 (582)
T ss_pred CCccccccH
Confidence 344566777
No 185
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=57.99 E-value=12 Score=41.62 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=8.6
Q ss_pred eeEEeecCCCcc
Q 009251 289 RIVVAENLPEDH 300 (539)
Q Consensus 289 rTVyV~nLP~d~ 300 (539)
|+++|++||+..
T Consensus 520 c~~vVE~Fpess 531 (817)
T KOG1925|consen 520 CSLVVETFPESS 531 (817)
T ss_pred HHHHHHhCCcch
Confidence 567788888754
No 186
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=56.92 E-value=83 Score=33.87 Aligned_cols=11 Identities=9% Similarity=0.465 Sum_probs=5.6
Q ss_pred CCChHHHHHHh
Q 009251 192 GLNDESIQKVL 202 (539)
Q Consensus 192 ~ls~e~~~kI~ 202 (539)
.+++--.+.|.
T Consensus 356 plSeAEFEdiM 366 (498)
T KOG4849|consen 356 PLSEAEFEDIM 366 (498)
T ss_pred cchHHHHHHHH
Confidence 35555555554
No 187
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=56.58 E-value=26 Score=28.68 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=35.9
Q ss_pred cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCC
Q 009251 299 DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEG 371 (539)
Q Consensus 299 d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~ 371 (539)
.++.++|+..+.+|+- ..|+. ++ .| -||.|.+.++|+++....++..
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~ 57 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTL 57 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCE
Confidence 5688999999999964 33433 31 12 6999999999999999877654
No 188
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.20 E-value=74 Score=34.82 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=41.2
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCe-eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V-~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-.|-|.+||.....+||...|+.|+.- -.|.++. .-+||-.|++...|..||.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD------------------------dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD------------------------DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEee------------------------cceeEEeecchHHHHHHhh
Confidence 467889999999999999999999751 2233321 2379999999999988886
No 189
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=52.46 E-value=53 Score=37.13 Aligned_cols=9 Identities=11% Similarity=0.132 Sum_probs=4.3
Q ss_pred ChHHHHHHh
Q 009251 194 NDESIQKVL 202 (539)
Q Consensus 194 s~e~~~kI~ 202 (539)
+.+++-+|+
T Consensus 302 tpd~RcRvv 310 (582)
T PF03276_consen 302 TPDLRCRVV 310 (582)
T ss_pred CccHHHHHH
Confidence 445554444
No 190
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.25 E-value=30 Score=31.26 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=25.9
Q ss_pred eEEeecCCCc---------ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccH
Q 009251 290 IVVAENLPED---------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (539)
Q Consensus 290 TVyV~nLP~d---------~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~ 357 (539)
+++|-|++.+ .+.+.|++.|+.|..++ |+.++.. .++.|++.|+|...
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCC
Confidence 6777777643 35578999999998875 5555431 13478999999873
No 191
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=48.97 E-value=63 Score=34.94 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceE
Q 009251 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLV 264 (539)
Q Consensus 192 ~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~Le 264 (539)
+.+=..+.++++| | +|.||.+. | |.|-.+.-|-|.- +.||++...+.
T Consensus 259 EvDMS~lm~mRk~---y-------kdaf~kKh------G-vKlGfMs~F~KA~---------~~Alq~qPvVN 305 (457)
T KOG0559|consen 259 EVDMSNLMEMRKQ---Y-------KDAFLKKH------G-VKLGFMSGFSKAA---------AYALQDQPVVN 305 (457)
T ss_pred hhhHHHHHHHHHH---H-------HHHHHHHh------C-ceeeehhHHHHHH---------HHHhhhCccee
Confidence 3444556677777 2 57887775 2 4455555564433 34555555543
No 192
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.47 E-value=22 Score=39.04 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=10.2
Q ss_pred cceeeccCCCccccH
Q 009251 204 QVEYYFSDLNLATTD 218 (539)
Q Consensus 204 QVEyYFSD~NL~~D~ 218 (539)
-||||-.+.||.-|.
T Consensus 335 ~VEnq~~~~~~Vi~~ 349 (480)
T KOG2675|consen 335 RVENQENNKNLVIDD 349 (480)
T ss_pred EEeeecCCcceeeee
Confidence 477777777776543
No 193
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=46.85 E-value=1.1e+02 Score=23.43 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=41.2
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccH----HHHHHHHH
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV----ELAEKAIA 365 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~----E~AekAv~ 365 (539)
|+.|.|+.-..+...|++.+.+.-.|.++.+-.. ++.+-|+|+.. ++..++|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~-----------------------~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE-----------------------TKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT-----------------------TTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC-----------------------CCEEEEEEecCCCCHHHHHHHHH
Confidence 6788999888899999999999988999998432 34588888854 45555555
Q ss_pred H
Q 009251 366 E 366 (539)
Q Consensus 366 ~ 366 (539)
.
T Consensus 58 ~ 58 (62)
T PF00403_consen 58 K 58 (62)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=46.79 E-value=23 Score=33.68 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.....+++.+++..++..++..+|..+|.|..+.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeecc
Confidence 356789999999999999999999999999777663
No 195
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.60 E-value=50 Score=31.88 Aligned_cols=93 Identities=16% Similarity=0.270 Sum_probs=48.5
Q ss_pred CCChHHHHHHhhcceeeccCCC-ccccHHHHHhhcCCCCCceecccccchhhHHHhhhc---HHHHHHhhhcCcceE---
Q 009251 192 GLNDESIQKVLNQVEYYFSDLN-LATTDHLIRFILKDPEGYVPISTVASFKKIKAIISS---HSHLASVLRKSSKLV--- 264 (539)
Q Consensus 192 ~ls~e~~~kI~kQVEyYFSD~N-L~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d---~e~I~~ALr~S~~Le--- 264 (539)
-..+..++.++.||+=|==-+- ..+|-||.+ -||.-.+. ..+||-.|... -+.+.+||.-++.-.
T Consensus 67 ~~~d~~l~efl~qLddYtP~IPDavt~~yL~~------aGf~~~D~--rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~ 138 (176)
T KOG3423|consen 67 TTKDTHLEEFLAQLDDYTPTIPDAVTDHYLKK------AGFQTSDP--RVKRLVSLAAQKFVSDIANDALQHSKIRTKTA 138 (176)
T ss_pred CCcchHHHHHHHHHhcCCCCCcHHHHHHHHHh------cCCCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 4456667899999998843332 123334333 37643332 22344444332 145566776553211
Q ss_pred EeecccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCC
Q 009251 265 VSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVG 313 (539)
Q Consensus 265 Vsedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G 313 (539)
+..++++-+. + -...|.++|...+..||
T Consensus 139 ~~~~k~~~kd--------------k-------K~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 139 IGKDKKQAKD--------------K-------KYTLTMEDLSPALAEYG 166 (176)
T ss_pred cccccccccc--------------c-------ceeeeHHHHHHHHHHhC
Confidence 2222222111 1 12468899999999999
No 196
>PTZ00315 2'-phosphotransferase; Provisional
Probab=44.45 E-value=14 Score=42.11 Aligned_cols=53 Identities=23% Similarity=0.335 Sum_probs=39.7
Q ss_pred hcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcc--eEEe---ecc-cccccCC
Q 009251 224 ILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSK--LVVS---EDG-KKIKRQN 276 (539)
Q Consensus 224 i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~--LeVs---edg-~kVRRk~ 276 (539)
+..|.+|||.|+.|+.-.+++....+.+.|.++++++++ .+++ +++ .+||-..
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK~RF~l~~~~~~~~~~IRA~Q 456 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDKQRFKLAYGAADGRLYIRANQ 456 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCCCceEEeccCCCCceEEEecc
Confidence 457899999999999887777655678899999988764 6776 344 3576553
No 197
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=40.87 E-value=57 Score=35.79 Aligned_cols=18 Identities=17% Similarity=0.119 Sum_probs=9.5
Q ss_pred CChHHHHHHhhcceeecc
Q 009251 193 LNDESIQKVLNQVEYYFS 210 (539)
Q Consensus 193 ls~e~~~kI~kQVEyYFS 210 (539)
.+.++...|.+.+..|+.
T Consensus 83 PtreLa~Qi~~~~~~~~~ 100 (456)
T PRK10590 83 PTRELAAQIGENVRDYSK 100 (456)
T ss_pred CcHHHHHHHHHHHHHHhc
Confidence 345565555555554443
No 198
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=38.19 E-value=84 Score=34.39 Aligned_cols=19 Identities=37% Similarity=0.258 Sum_probs=9.8
Q ss_pred CCCcccccCCCCCCCCCCC
Q 009251 34 NSSFSRLNAKAPEFVPTRN 52 (539)
Q Consensus 34 ~~~~~~~~~~~p~~~p~~~ 52 (539)
..|++-.|..+++-|-+..
T Consensus 502 ~~s~~~~~~k~l~~v~~~g 520 (563)
T KOG1785|consen 502 QTSSSGVNIKELENVETSG 520 (563)
T ss_pred CCCCCCcchhhhhcccccC
Confidence 4455555555555554433
No 199
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=36.15 E-value=2.3e+02 Score=22.90 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec-cHHHHHHHHHHHcCC
Q 009251 301 CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE-SVELAEKAIAELNDE 370 (539)
Q Consensus 301 t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe-s~E~AekAv~~Ln~~ 370 (539)
+.-++.+.|+.+| |.-.+|-.- |...+ .+ .=.-||+|+ ..+..++|++.|...
T Consensus 13 ~L~~vL~~f~~~~-iNlt~IeSR-------P~~~~-----~~----~y~Ffvd~~~~~~~~~~~l~~L~~~ 66 (74)
T cd04904 13 ALARALKLFEEFG-VNLTHIESR-------PSRRN-----GS----EYEFFVDCEVDRGDLDQLISSLRRV 66 (74)
T ss_pred HHHHHHHHHHHCC-CcEEEEECC-------CCCCC-----Cc----eEEEEEEEEcChHHHHHHHHHHHHh
Confidence 4568888999987 333344210 11111 01 235788888 556678888888653
No 200
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=35.29 E-value=27 Score=35.86 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.0
Q ss_pred CCCccccccC
Q 009251 521 DGTRGFAMGR 530 (539)
Q Consensus 521 dgtrgf~~gr 530 (539)
||--||.+|.
T Consensus 112 nG~VGlG~gK 121 (257)
T PTZ00070 112 NGHIGLGAKV 121 (257)
T ss_pred CCcEecceee
Confidence 3444444433
No 201
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=35.12 E-value=87 Score=32.95 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=51.0
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
-..|.|..+|+..+++.-++...|-+||.|++|-++...... .+.. .. -..+.+..+-|-+.+.+-...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~----~d~~--~~----d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKP----SDDY--ND----DKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcc----cccc--cc----cccceEEEEeeechHHHHHHH
Confidence 467899999999999999999999999999999998654311 1111 01 112467899999998876554
No 202
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=35.07 E-value=40 Score=37.42 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=37.8
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCC
Q 009251 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRS 375 (539)
Q Consensus 300 ~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~ 375 (539)
...+....+|+++|.++...+|. - . -||..|.|+ +.|.+++.-++...+|..
T Consensus 209 ~~s~~r~k~fee~g~~~r~el~p-~-------------------~--hg~~~vv~~--enan~~m~s~da~ei~~~ 260 (526)
T KOG2135|consen 209 RNSENRRKFFEEFGVLERGELCP-T-------------------H--HGCVPVVSK--ENANKTMKSEDAAEIMKT 260 (526)
T ss_pred cccHHhhhhhHhhceeeeccccc-c-------------------c--cccceeEee--ccccccccCCcchhhhhc
Confidence 45678999999999988777762 1 1 456666666 778888877766777765
No 203
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=33.55 E-value=1.1e+02 Score=26.16 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=36.2
Q ss_pred EeecCCCcccHHHHHHHhhc-CC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 292 VAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 292 yV~nLP~d~t~e~L~e~Fs~-~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
|+=-++.+++..+|++.++. || .|..|+++.-. +. .-=|||.|...++|......|
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~----------~~----------~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP----------KG----------EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC----------CC----------cEEEEEEeCCCCcHHHHHHhh
Confidence 33344567787777777776 55 67777765321 00 113999999998888776544
No 204
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=32.87 E-value=1.5e+02 Score=23.93 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 302 HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 302 ~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.++|.+++.++| +...+|.- . +.-++.|+-|++.+.++++++.|.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sG-----s----------------G~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSG-----S----------------GGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEET-----T----------------SSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCC-----C----------------CCCCeEEEEECCHHHHHHHHHHHH
Confidence 467888888999 66666621 0 114688999999999999988875
No 205
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=32.60 E-value=1.4e+02 Score=24.31 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=37.7
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
.++.|.++--..+...+++..+...-|..|.+-.+ ++.++|+|++
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~-----------------------~~~~~V~~d~ 48 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE-----------------------KGTATVTFDS 48 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc-----------------------cCeEEEEEcC
Confidence 47889999888889999999999888999988433 4469999998
No 206
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=30.20 E-value=89 Score=35.22 Aligned_cols=10 Identities=40% Similarity=0.889 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 009251 77 PPPPPAAAMV 86 (539)
Q Consensus 77 ppppp~~~~~ 86 (539)
.|||||-+.|
T Consensus 249 vPPPPP~G~~ 258 (817)
T KOG1925|consen 249 VPPPPPKGPF 258 (817)
T ss_pred CCCCCCCCCC
Confidence 3444444433
No 207
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.84 E-value=16 Score=37.02 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred CCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhc-----CcceEE
Q 009251 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK-----SSKLVV 265 (539)
Q Consensus 191 ~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~-----S~~LeV 265 (539)
-..++.+.++|++.++.- .++.+.+ | --+.|.+.-.++-..+++..+..|.+.+ +.|++ +..-.+
T Consensus 12 FL~~~~~~~~Iv~~~~~~-------~~~~VlE-i-GpG~G~lT~~L~~~~~~v~~vE~d~~~~-~~L~~~~~~~~~~~vi 81 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLS-------EGDTVLE-I-GPGPGALTRELLKRGKRVIAVEIDPDLA-KHLKERFASNPNVEVI 81 (262)
T ss_dssp EEEHHHHHHHHHHHHTCG-------TTSEEEE-E-SSTTSCCHHHHHHHSSEEEEEESSHHHH-HHHHHHCTTCSSEEEE
T ss_pred eeCCHHHHHHHHHhcCCC-------CCCEEEE-e-CCCCccchhhHhcccCcceeecCcHhHH-HHHHHHhhhcccceee
Confidence 345677788888776543 1111111 1 2245555555544445555555555432 22322 223334
Q ss_pred eecccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhh--cCCCeeEE
Q 009251 266 SEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFS--AVGSVKTI 318 (539)
Q Consensus 266 sedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs--~~G~V~~V 318 (539)
..|..++.....+ .....++|.|||+..+.+-|..++. .||.+..+
T Consensus 82 ~~D~l~~~~~~~~-------~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 82 NGDFLKWDLYDLL-------KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp ES-TTTSCGGGHC-------SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred ecchhccccHHhh-------cCCceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 4554433221111 2345789999999999998888886 45544333
No 208
>PRK06545 prephenate dehydrogenase; Validated
Probab=29.64 E-value=1.3e+02 Score=31.91 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=42.0
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..|||.=-++-=....|..++...| .|++|+|.+-+. ...|..-+.|.+.+++++|.+.|
T Consensus 291 ~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~-------------------~~~g~~~~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 291 YDLYVDVPDEPGVIARVTAILGEEGISIENLRILEARE-------------------DIHGVLQISFKNEEDRERAKALL 351 (359)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccC-------------------CcCceEEEEeCCHHHHHHHHHHH
Confidence 3556553333334566777777776 689999965421 01467889999999999999877
Q ss_pred c
Q 009251 368 N 368 (539)
Q Consensus 368 n 368 (539)
.
T Consensus 352 ~ 352 (359)
T PRK06545 352 E 352 (359)
T ss_pred H
Confidence 5
No 209
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=89 Score=33.51 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.8
Q ss_pred hhhHHHh
Q 009251 240 FKKIKAI 246 (539)
Q Consensus 240 FkKmK~L 246 (539)
+++|+..
T Consensus 248 ~~kL~~~ 254 (365)
T KOG2391|consen 248 KQKLVAM 254 (365)
T ss_pred HHHHHHH
Confidence 3444443
No 210
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.33 E-value=2.1e+02 Score=25.72 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 303 QNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 303 e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+|.++.+++| |.+-.|..+... +-.|+|+|+.+.+..-.++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~-------------------n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE-------------------NLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc-------------------ccEEEEEEEcChHHHHHHHh
Confidence 57888999998 567777554311 25689999996665555544
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=26.94 E-value=39 Score=29.27 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.4
Q ss_pred hccceeEEeecCCCcccHHHHHHHh
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIF 309 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~F 309 (539)
.+..|||.|.|||....+|+|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4567899999999999999998764
No 212
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=26.93 E-value=94 Score=32.64 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCe
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSV 315 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V 315 (539)
.-||+.||+.|+...+|+.-+.+-|.+
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~ 357 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT 357 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC
Confidence 359999999999999999988887653
No 213
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.86 E-value=3e+02 Score=21.34 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=15.1
Q ss_pred cHHHHHHHhhcCC-CeeEEEE
Q 009251 301 CHQNLMKIFSAVG-SVKTIRT 320 (539)
Q Consensus 301 t~e~L~e~Fs~~G-~V~~VrI 320 (539)
...+|.++|.+.| .|.++-+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~ 34 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSI 34 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEE
Confidence 4678889998887 5777765
No 214
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=25.58 E-value=64 Score=31.69 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=47.0
Q ss_pred eEEeecCCCcc-----cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 290 IVVAENLPEDH-----CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 290 TVyV~nLP~d~-----t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
++++.+++.++ .....+.+|-.|-+....+++ ..++..-|-|.+.+.|..|.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-----------------------rsfrrvRi~f~~p~~a~~a~ 68 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-----------------------RSFRRVRINFSNPEAAADAR 68 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-----------------------HhhceeEEeccChhHHHHHH
Confidence 56777777654 233556677666655444432 22556889999999999999
Q ss_pred HHHcCCCCCCC-ceEEEEee
Q 009251 365 AELNDEGNWRS-GLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~-glrV~l~~ 383 (539)
.++....+.++ -++.+++.
T Consensus 69 i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 69 IKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred HHhhhcccCCCceEEEEEcc
Confidence 98887776555 45555543
No 215
>KOG3172 consensus Small nuclear ribonucleoprotein Sm D3 [RNA processing and modification]
Probab=25.00 E-value=51 Score=29.54 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.4
Q ss_pred CCeeEEEE
Q 009251 313 GSVKTIRT 320 (539)
Q Consensus 313 G~V~~VrI 320 (539)
|-|..+.+
T Consensus 15 GhIVt~Et 22 (119)
T KOG3172|consen 15 GHIVTVET 22 (119)
T ss_pred CcEEEEEe
Confidence 44444443
No 216
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=24.74 E-value=80 Score=32.66 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=18.1
Q ss_pred EEEEeccHHHHHHHHHHHcCC
Q 009251 350 AFVEYESVELAEKAIAELNDE 370 (539)
Q Consensus 350 AFVEFes~E~AekAv~~Ln~~ 370 (539)
|||+|+++.+|..|++.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 799999999999999966544
No 217
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.66 E-value=2.2e+02 Score=24.04 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=36.8
Q ss_pred EeecCCCcccHHHHHHHhhc-CC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 292 VAENLPEDHCHQNLMKIFSA-VG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 292 yV~nLP~d~t~e~L~e~Fs~-~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
|+=.++.+++..+|++.++. || .|..|+.+.-. .. .-=|||.+..-+.|......|
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-------~~-------------~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-------RG-------------EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-------CC-------------ceEEEEEECCCCcHHHHHHhh
Confidence 44456678888888887777 55 57777654321 00 113999999988887766544
No 218
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=22.65 E-value=3.9e+02 Score=21.17 Aligned_cols=53 Identities=21% Similarity=0.341 Sum_probs=33.4
Q ss_pred ccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc---HHHHHHHHHHHcCC
Q 009251 300 HCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES---VELAEKAIAELNDE 370 (539)
Q Consensus 300 ~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes---~E~AekAv~~Ln~~ 370 (539)
-+..++.++|+.+| .|..|.-+ |.. .+ .+.-..||+++. .+..+++++.|...
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Sr-p~~--------~~---------~~~~~f~id~~~~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESR-PSR--------KG---------LWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEee-ecC--------CC---------CceEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 34678889999986 56666432 210 00 013468899985 66777888888653
No 219
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=22.20 E-value=72 Score=35.14 Aligned_cols=59 Identities=25% Similarity=0.407 Sum_probs=42.5
Q ss_pred ceeEEeecCCCc-----ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEE---EEeccHHH
Q 009251 288 SRIVVAENLPED-----HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAF---VEYESVEL 359 (539)
Q Consensus 288 ~rTVyV~nLP~d-----~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AF---VEFes~E~ 359 (539)
..+|.++|++.. .+.++|.++++.++...+|.+|.|. +++| -++.+.++
T Consensus 268 gV~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~rlGvCLDT-----------------------cHafaAGydl~t~e~ 324 (413)
T PTZ00372 268 SVIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSRVGVCLDT-----------------------CHLFAAGYDIRTKES 324 (413)
T ss_pred CCEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCCeEEEEEH-----------------------HHHHhcCCCCCcHHH
Confidence 467899999752 4689999999998776788888762 2333 34567777
Q ss_pred HHHHHHHHcC
Q 009251 360 AEKAIAELND 369 (539)
Q Consensus 360 AekAv~~Ln~ 369 (539)
....++.++.
T Consensus 325 ~~~~l~~f~~ 334 (413)
T PTZ00372 325 FDKVMKEFDE 334 (413)
T ss_pred HHHHHHHHHH
Confidence 7777776653
No 220
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=21.49 E-value=53 Score=33.29 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=88.9
Q ss_pred cccccCcccCCCCCCChHHHHHHhhcceeecc--CCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHh
Q 009251 179 VKDKKEKKDHQHGGLNDESIQKVLNQVEYYFS--DLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASV 256 (539)
Q Consensus 179 v~~k~~~~~~~~~~ls~e~~~kI~kQVEyYFS--D~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~A 256 (539)
.|+|+... =....++++..++..|..++-|- +.-|+.-.||.+.- ++|- .++.+..+...+-
T Consensus 32 mFvksqRk-w~sp~msee~ae~f~kaa~~~~~~l~qivpHGsYliN~~--npd~-------------ek~eks~~~~vDd 95 (281)
T KOG3997|consen 32 MFVKSQRK-WNSPPMSEEVAEKFWKAARETNFPLDQIVPHGSYLINAG--NPDA-------------EKLEKSRECFVDD 95 (281)
T ss_pred HHHhCccc-cCCCCccHHHHHHHHHHHHhccCchhhcccccchhcccC--CccH-------------HHHHHHHHHHHHH
Confidence 44444332 23457889999988877666554 44677778877752 2221 1122233333333
Q ss_pred hhcCcceEEee----ccccccc--------CCCCcchhhhhccceeEEeecCCCc-----ccHHHHHHHhhcCCCeeEEE
Q 009251 257 LRKSSKLVVSE----DGKKIKR--------QNPLTESDLEELQSRIVVAENLPED-----HCHQNLMKIFSAVGSVKTIR 319 (539)
Q Consensus 257 Lr~S~~LeVse----dg~kVRR--------k~Pl~e~~~~e~~~rTVyV~nLP~d-----~t~e~L~e~Fs~~G~V~~Vr 319 (539)
|+....|-|.- -|..+.. ...--....++.+.-+|+++|+--. -|-++|+.+-++.-.-.+|.
T Consensus 96 l~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~Rig 175 (281)
T KOG3997|consen 96 LQRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIG 175 (281)
T ss_pred HHHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhhe
Confidence 43333332221 0111111 1011112345667788999988742 47899999998887778888
Q ss_pred EeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCC
Q 009251 320 TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGN 372 (539)
Q Consensus 320 I~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~ 372 (539)
+|.|.- -.|+ |=-+-.|+|.-++.+++++...-
T Consensus 176 VClDTC----------------H~Fa----aGyDI~Tee~y~evmkeFdevVG 208 (281)
T KOG3997|consen 176 VCLDTC----------------HTFA----AGYDIRTEEAYEEVMKEFDEVVG 208 (281)
T ss_pred eeHhhh----------------hhhc----cccccchHHHHHHHHHHHHHHhh
Confidence 887631 1111 11256788888999998886543
No 221
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=21.05 E-value=28 Score=38.54 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHhhcceeeccCCCccccHHHHHhhcCCCCC---ceecccccchhhHHHhhhcHHHHHHhhhcC
Q 009251 200 KVLNQVEYYFSDLNLATTDHLIRFILKDPEG---YVPISTVASFKKIKAIISSHSHLASVLRKS 260 (539)
Q Consensus 200 kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG---~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S 260 (539)
+-.++++|||+-.++.+|.|+... .+..| +.+++.+.+|.+...+..+...+...+..+
T Consensus 102 ~~~k~~s~~~~~~~~~~~~~~~~k--~~~t~~~~~~~~S~~~~s~~~~~~s~n~~~~~~~~~~s 163 (448)
T KOG2590|consen 102 KSDKKKSWPASKPFTPRDSFKGSK--PTNTGNGTFLPISKISSSGPVSGGSANNSNIRGPLKGS 163 (448)
T ss_pred cccccccCcccCCCCccccccCCC--ccccCCCccCCCccccccccccCcccccccccCcCCCC
Confidence 445599999999999999998887 45566 999999999999999999998888888874
No 222
>PRK09752 adhesin; Provisional
Probab=20.81 E-value=94 Score=38.46 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.4
Q ss_pred ccccch
Q 009251 235 STVASF 240 (539)
Q Consensus 235 ~~i~sF 240 (539)
-+++.|
T Consensus 1033 GVMaGY 1038 (1250)
T PRK09752 1033 GIVGGY 1038 (1250)
T ss_pred EEEEEE
Confidence 334444
No 223
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.10 E-value=2.1e+02 Score=34.00 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=8.0
Q ss_pred CCCCceeccccc
Q 009251 227 DPEGYVPISTVA 238 (539)
Q Consensus 227 d~eG~Vpi~~i~ 238 (539)
..+||||-..+.
T Consensus 1093 ~keG~~P~~Yv~ 1104 (1106)
T KOG0162|consen 1093 GKEGLFPGNYVT 1104 (1106)
T ss_pred Cccccccccccc
Confidence 457888876554
Done!