Query 009251
Match_columns 539
No_of_seqs 389 out of 2030
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2voo_A Lupus LA protein; RNA-b 100.0 1.9E-37 6.6E-42 297.7 12.7 170 192-381 7-183 (193)
2 1s29_A LA protein; winged heli 99.9 7.4E-29 2.5E-33 211.8 4.1 89 191-279 4-92 (92)
3 2cqk_A C-MPL binding protein; 99.9 1E-26 3.5E-31 201.4 2.8 87 191-279 8-94 (101)
4 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.4E-17 1.8E-21 148.9 10.2 80 287-383 38-117 (156)
5 4fxv_A ELAV-like protein 1; RN 99.7 2.2E-16 7.4E-21 135.4 9.5 79 287-382 18-96 (99)
6 1u6f_A Tcubp1, RNA-binding pro 99.6 5E-16 1.7E-20 139.4 10.6 87 284-387 38-124 (139)
7 2fy1_A RNA-binding motif prote 99.6 1.9E-15 6.6E-20 132.8 12.6 83 286-386 5-87 (116)
8 3s8s_A Histone-lysine N-methyl 99.6 6.3E-16 2.2E-20 135.2 9.4 80 287-383 5-84 (110)
9 3q2s_C Cleavage and polyadenyl 99.6 1.2E-16 4E-21 157.1 5.1 81 287-384 67-149 (229)
10 2dnz_A Probable RNA-binding pr 99.6 2.9E-15 9.9E-20 125.5 13.0 81 287-384 4-84 (95)
11 1x5s_A Cold-inducible RNA-bind 99.6 2.6E-15 8.9E-20 127.6 11.9 83 287-386 11-93 (102)
12 2dgs_A DAZ-associated protein 99.6 3.3E-15 1.1E-19 126.5 12.5 82 286-385 8-89 (99)
13 1whw_A Hypothetical protein ri 99.6 2.2E-15 7.4E-20 127.4 11.2 82 286-384 6-87 (99)
14 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.6E-15 5.4E-20 124.9 9.7 81 287-384 5-85 (87)
15 1p27_B RNA-binding protein 8A; 99.6 3E-15 1E-19 128.1 11.6 83 286-385 21-103 (106)
16 2dgp_A Bruno-like 4, RNA bindi 99.6 3.5E-15 1.2E-19 127.7 11.2 83 285-384 10-95 (106)
17 3ex7_B RNA-binding protein 8A; 99.6 3E-15 1E-19 132.2 11.0 86 286-388 20-105 (126)
18 1x5u_A Splicing factor 3B subu 99.6 2.8E-15 9.5E-20 128.1 10.4 82 286-384 13-94 (105)
19 3pgw_S U1-70K; protein-RNA com 99.6 7.4E-15 2.5E-19 157.2 15.6 81 287-384 101-181 (437)
20 2lxi_A RNA-binding protein 10; 99.6 4.3E-16 1.5E-20 131.2 4.7 78 288-382 1-80 (91)
21 1x5t_A Splicing factor 3B subu 99.6 2.1E-15 7.2E-20 126.6 8.7 81 287-384 4-85 (96)
22 2dgo_A Cytotoxic granule-assoc 99.6 5.8E-15 2E-19 128.3 11.8 84 286-386 13-96 (115)
23 2d9p_A Polyadenylate-binding p 99.6 4.6E-15 1.6E-19 126.4 11.0 81 286-385 13-93 (103)
24 2dnm_A SRP46 splicing factor; 99.6 3E-15 1E-19 127.6 9.8 81 287-384 12-92 (103)
25 2cph_A RNA binding motif prote 99.6 6.2E-15 2.1E-19 126.1 11.8 82 286-384 13-96 (107)
26 2do4_A Squamous cell carcinoma 99.6 3.2E-15 1.1E-19 126.8 9.8 80 286-383 15-94 (100)
27 2adc_A Polypyrimidine tract-bi 99.6 4.7E-15 1.6E-19 144.0 12.3 74 288-383 151-226 (229)
28 2cq0_A Eukaryotic translation 99.6 2.2E-15 7.5E-20 128.5 8.6 82 286-384 13-94 (103)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.1E-15 7.3E-20 128.1 8.4 81 287-384 11-91 (102)
30 2cqd_A RNA-binding region cont 99.6 3.7E-15 1.3E-19 129.9 10.1 81 285-383 14-94 (116)
31 3ns6_A Eukaryotic translation 99.6 1.9E-15 6.5E-20 129.2 8.1 80 287-383 5-91 (100)
32 3md1_A Nuclear and cytoplasmic 99.6 4.9E-15 1.7E-19 120.9 10.0 78 289-383 2-79 (83)
33 4f25_A Polyadenylate-binding p 99.6 2.4E-15 8.2E-20 131.7 8.6 78 288-384 5-82 (115)
34 1wex_A Hypothetical protein (r 99.6 8E-15 2.8E-19 127.3 11.7 75 287-384 14-90 (104)
35 1s79_A Lupus LA protein; RRM, 99.6 4.5E-15 1.5E-19 128.4 10.0 80 285-383 8-87 (103)
36 2x1f_A MRNA 3'-END-processing 99.6 4.1E-15 1.4E-19 125.4 9.4 79 288-383 2-80 (96)
37 3p5t_L Cleavage and polyadenyl 99.6 1.6E-15 5.3E-20 126.8 6.6 79 289-384 2-82 (90)
38 2dnh_A Bruno-like 5, RNA bindi 99.6 7.9E-15 2.7E-19 125.2 11.2 80 287-384 14-96 (105)
39 1x4h_A RNA-binding protein 28; 99.6 5.3E-15 1.8E-19 127.4 10.0 81 286-383 13-99 (111)
40 3r27_A HnRNP L, heterogeneous 99.6 4.8E-15 1.6E-19 128.4 9.7 73 287-382 20-94 (100)
41 1x4a_A Splicing factor, argini 99.6 5.6E-15 1.9E-19 127.4 10.2 78 286-383 20-97 (109)
42 1sjq_A Polypyrimidine tract-bi 99.6 1.8E-15 6.1E-20 132.2 7.0 73 287-382 15-89 (105)
43 1oo0_B CG8781-PA, drosophila Y 99.6 5.7E-15 1.9E-19 127.4 10.1 83 286-385 24-106 (110)
44 2cq4_A RNA binding motif prote 99.6 2.7E-15 9.3E-20 130.4 8.1 83 283-383 20-102 (114)
45 2cpz_A CUG triplet repeat RNA- 99.6 3.1E-15 1.1E-19 130.2 8.4 81 286-383 23-103 (115)
46 4a8x_A RNA-binding protein wit 99.6 2.7E-15 9.3E-20 123.6 7.5 81 287-383 3-83 (88)
47 2ad9_A Polypyrimidine tract-bi 99.6 5.5E-15 1.9E-19 131.8 10.1 77 287-386 30-108 (119)
48 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 122.6 7.9 79 287-382 6-84 (85)
49 2dgu_A Heterogeneous nuclear r 99.6 6.4E-15 2.2E-19 125.9 10.1 75 287-386 10-84 (103)
50 2cqi_A Nucleolysin TIAR; RNA r 99.6 7.3E-15 2.5E-19 125.2 10.3 79 286-383 13-91 (103)
51 1x4d_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 129.6 8.1 74 287-383 14-90 (102)
52 2lkz_A RNA-binding protein 5; 99.6 2.4E-15 8.2E-20 128.5 7.0 77 288-381 9-91 (95)
53 2cq3_A RNA-binding protein 9; 99.6 1.3E-14 4.5E-19 123.6 11.5 81 286-385 13-93 (103)
54 2e5h_A Zinc finger CCHC-type a 99.6 4.9E-15 1.7E-19 123.9 8.6 79 287-382 15-93 (94)
55 3beg_B Splicing factor, argini 99.6 8.7E-15 3E-19 128.3 10.6 69 287-379 15-83 (115)
56 2la6_A RNA-binding protein FUS 99.6 9.4E-15 3.2E-19 123.8 10.3 79 287-382 12-98 (99)
57 3ucg_A Polyadenylate-binding p 99.6 4.2E-15 1.4E-19 122.9 7.9 79 286-382 4-82 (89)
58 2cpe_A RNA-binding protein EWS 99.6 4.7E-15 1.6E-19 128.5 8.4 82 285-383 12-101 (113)
59 1x4c_A Splicing factor, argini 99.6 9.5E-15 3.3E-19 126.2 10.3 74 287-384 14-92 (108)
60 1wi8_A EIF-4B, eukaryotic tran 99.6 7.9E-15 2.7E-19 125.4 9.7 80 287-384 14-93 (104)
61 2kxn_B Transformer-2 protein h 99.6 6.6E-15 2.2E-19 132.1 9.3 80 287-383 45-124 (129)
62 2dnq_A RNA-binding protein 4B; 99.6 1.7E-14 5.8E-19 120.2 11.2 73 287-384 7-79 (90)
63 2div_A TRNA selenocysteine ass 99.6 5.3E-15 1.8E-19 125.0 8.1 79 287-382 8-91 (99)
64 2cqc_A Arginine/serine-rich sp 99.6 5.8E-15 2E-19 123.5 8.1 79 287-382 14-92 (95)
65 2ywk_A Putative RNA-binding pr 99.6 6.3E-15 2.1E-19 123.5 8.3 79 286-382 14-92 (95)
66 2khc_A Testis-specific RNP-typ 99.6 5.1E-15 1.7E-19 129.2 7.9 81 285-382 37-117 (118)
67 2qfj_A FBP-interacting repress 99.6 6.6E-15 2.3E-19 139.5 9.3 83 286-385 123-205 (216)
68 1p1t_A Cleavage stimulation fa 99.6 4.9E-15 1.7E-19 126.2 7.6 82 286-384 6-87 (104)
69 2do0_A HnRNP M, heterogeneous 99.6 2E-14 6.8E-19 124.5 11.5 80 287-384 14-93 (114)
70 2jrs_A RNA-binding protein 39; 99.6 1.1E-14 3.7E-19 126.4 9.8 81 286-383 24-104 (108)
71 2cpf_A RNA binding motif prote 99.6 5.9E-15 2E-19 124.5 7.8 83 287-383 4-86 (98)
72 2cq1_A PTB-like protein L; RRM 99.6 1.4E-14 4.6E-19 125.3 10.2 75 287-384 14-90 (101)
73 3ulh_A THO complex subunit 4; 99.6 1.1E-14 3.9E-19 124.7 9.6 78 287-382 28-105 (107)
74 1why_A Hypothetical protein ri 99.5 1.8E-14 6.3E-19 121.6 10.5 74 287-383 16-91 (97)
75 2kvi_A Nuclear polyadenylated 99.5 1.9E-14 6.6E-19 121.5 10.4 74 286-384 8-82 (96)
76 1whx_A Hypothetical protein ri 99.5 1.9E-14 6.4E-19 125.5 10.5 76 286-384 8-83 (111)
77 2cpj_A Non-POU domain-containi 99.5 1.8E-14 6E-19 122.1 10.0 75 287-384 14-88 (99)
78 2dgv_A HnRNP M, heterogeneous 99.5 1.8E-14 6.2E-19 119.9 9.9 79 287-384 7-85 (92)
79 2dhg_A TRNA selenocysteine ass 99.5 1.5E-14 5.1E-19 123.3 9.5 79 287-383 8-88 (104)
80 2dnp_A RNA-binding protein 14; 99.5 1.4E-14 4.6E-19 120.8 9.0 74 286-384 7-80 (90)
81 2kn4_A Immunoglobulin G-bindin 99.5 3.7E-14 1.3E-18 129.7 12.6 82 286-384 68-149 (158)
82 1x4f_A Matrin 3; structural ge 99.5 1E-14 3.6E-19 128.7 8.5 75 287-384 24-101 (112)
83 2dgx_A KIAA0430 protein; RRM d 99.5 1.4E-14 4.9E-19 122.5 9.1 78 287-384 8-89 (96)
84 2dng_A Eukaryotic translation 99.5 1.9E-14 6.6E-19 122.7 9.8 78 287-383 14-91 (103)
85 1x4g_A Nucleolysin TIAR; struc 99.5 1.5E-14 5.2E-19 124.8 9.1 76 285-383 22-97 (109)
86 1uaw_A Mouse-musashi-1; RNP-ty 99.5 9.1E-15 3.1E-19 117.6 7.0 76 289-382 1-76 (77)
87 2cpi_A CCR4-NOT transcription 99.5 7.3E-15 2.5E-19 127.7 6.9 86 285-384 12-100 (111)
88 2dgt_A RNA-binding protein 30; 99.5 2.2E-14 7.4E-19 120.0 9.4 73 286-383 8-80 (92)
89 2wbr_A GW182, gawky, LD47780P; 99.5 1E-14 3.5E-19 123.6 7.4 72 288-382 7-78 (89)
90 2rs2_A Musashi-1, RNA-binding 99.5 1.5E-14 5.2E-19 125.6 8.5 81 286-384 23-103 (109)
91 1x5o_A RNA binding motif, sing 99.5 3.3E-14 1.1E-18 123.3 10.6 80 286-383 23-110 (114)
92 3n9u_C Cleavage and polyadenyl 99.5 1.3E-14 4.3E-19 134.6 8.5 81 287-384 54-136 (156)
93 2e5j_A Methenyltetrahydrofolat 99.5 2.3E-14 7.9E-19 121.1 9.2 76 287-384 18-93 (97)
94 2kt5_A RNA and export factor-b 99.5 3.7E-14 1.3E-18 125.1 10.9 80 287-384 34-113 (124)
95 3s7r_A Heterogeneous nuclear r 99.5 1.5E-14 5E-19 119.5 7.8 77 286-380 9-85 (87)
96 2hvz_A Splicing factor, argini 99.5 3.5E-14 1.2E-18 120.5 10.4 74 289-384 1-74 (101)
97 2jwn_A Embryonic polyadenylate 99.5 1.6E-14 5.5E-19 127.1 8.6 83 283-383 31-113 (124)
98 1x4b_A Heterogeneous nuclear r 99.5 1.5E-14 5.2E-19 126.0 8.2 81 285-383 24-104 (116)
99 2krb_A Eukaryotic translation 99.5 1.2E-14 4.2E-19 118.8 7.0 73 288-379 1-80 (81)
100 1x4e_A RNA binding motif, sing 99.5 1E-14 3.6E-19 119.8 6.5 70 287-373 4-73 (85)
101 2ki2_A SS-DNA binding protein 99.5 9.3E-15 3.2E-19 121.4 6.1 79 289-385 2-80 (90)
102 2dis_A Unnamed protein product 99.5 2.7E-14 9.1E-19 122.8 9.2 81 287-384 7-91 (109)
103 2err_A Ataxin-2-binding protei 99.5 1.7E-14 5.9E-19 125.1 8.1 80 285-383 26-105 (109)
104 2ytc_A PRE-mRNA-splicing facto 99.5 1.8E-14 6.2E-19 118.2 7.6 73 286-381 10-83 (85)
105 4f02_A Polyadenylate-binding p 99.5 1.1E-14 3.8E-19 139.9 7.4 81 285-384 100-180 (213)
106 2cqp_A RNA-binding protein 12; 99.5 9.7E-15 3.3E-19 123.2 6.1 80 287-383 14-93 (98)
107 3md3_A Nuclear and cytoplasmic 99.5 1.2E-13 4E-18 124.9 13.6 80 286-382 85-164 (166)
108 1wez_A HnRNP H', FTP-3, hetero 99.5 3.1E-14 1.1E-18 122.5 9.2 77 287-383 14-90 (102)
109 2lea_A Serine/arginine-rich sp 99.5 2.5E-14 8.5E-19 129.2 8.7 82 286-384 45-126 (135)
110 2ek1_A RNA-binding protein 12; 99.5 1E-14 3.6E-19 122.1 5.8 79 287-382 14-92 (95)
111 1rk8_A CG8781-PA, CG8781-PA pr 99.5 3.6E-14 1.2E-18 131.7 10.0 85 286-387 70-154 (165)
112 2m2b_A RNA-binding protein 10; 99.5 1.5E-14 5.2E-19 129.3 7.0 80 286-383 21-106 (131)
113 2i2y_A Fusion protein consists 99.5 1.1E-13 3.7E-18 126.0 12.8 77 285-383 70-146 (150)
114 2dh8_A DAZ-associated protein 99.5 1.1E-14 3.7E-19 124.6 5.7 79 286-382 14-92 (105)
115 2mss_A Protein (musashi1); RNA 99.5 2.3E-14 8E-19 115.0 7.3 74 290-381 1-74 (75)
116 2cqh_A IGF-II mRNA-binding pro 99.5 2.4E-14 8.3E-19 119.8 7.5 74 287-384 7-82 (93)
117 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.2E-14 7.5E-19 122.2 7.2 79 286-383 17-96 (100)
118 2la4_A Nuclear and cytoplasmic 99.5 1.9E-14 6.5E-19 122.2 6.7 72 287-381 26-97 (101)
119 2jvo_A Nucleolar protein 3; nu 99.5 2.7E-14 9.2E-19 124.1 7.7 75 284-383 27-101 (108)
120 2cqg_A TDP-43, TAR DNA-binding 99.5 5.1E-14 1.7E-18 120.0 9.1 78 286-382 13-90 (103)
121 2jvr_A Nucleolar protein 3; RN 99.5 2.2E-14 7.4E-19 126.2 7.0 76 287-383 27-103 (111)
122 3lqv_A PRE-mRNA branch site pr 99.5 8.8E-14 3E-18 120.8 10.7 77 287-383 7-83 (115)
123 2xnq_A Nuclear polyadenylated 99.5 5.8E-14 2E-18 119.4 9.4 73 286-383 20-93 (97)
124 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 3E-14 1E-18 127.2 7.8 79 286-381 61-139 (140)
125 1l3k_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 132.7 8.3 83 286-386 102-184 (196)
126 1fj7_A Nucleolin RBD1, protein 99.5 1E-14 3.5E-19 123.9 4.3 81 285-384 14-94 (101)
127 1wg5_A Heterogeneous nuclear r 99.5 6.1E-14 2.1E-18 120.4 9.1 78 287-383 14-92 (104)
128 2cpd_A Apobec-1 stimulating pr 99.5 7.5E-14 2.6E-18 118.2 9.5 72 287-383 14-87 (99)
129 2cpx_A Hypothetical protein FL 99.5 7.7E-14 2.6E-18 121.0 9.6 78 287-385 24-105 (115)
130 2cpy_A RNA-binding protein 12; 99.5 3E-14 1E-18 124.3 6.9 81 286-385 13-94 (114)
131 2dgw_A Probable RNA-binding pr 99.5 6E-14 2.1E-18 116.9 8.1 78 286-383 8-85 (91)
132 2lcw_A RNA-binding protein FUS 99.2 2.9E-15 9.8E-20 130.8 0.0 82 286-384 5-94 (116)
133 2db1_A Heterogeneous nuclear r 99.5 2.5E-14 8.6E-19 126.0 5.8 78 287-383 16-96 (118)
134 3nmr_A Cugbp ELAV-like family 99.5 1.1E-13 3.9E-18 126.2 10.4 79 286-382 93-174 (175)
135 1b7f_A Protein (SXL-lethal pro 99.5 2.7E-13 9.3E-18 123.1 12.4 79 286-381 87-167 (168)
136 2a3j_A U1 small nuclear ribonu 99.5 1.3E-13 4.4E-18 123.9 10.0 78 287-384 28-109 (127)
137 2nlw_A Eukaryotic translation 99.5 5.6E-14 1.9E-18 120.9 6.9 78 287-383 14-98 (105)
138 1wf1_A RNA-binding protein RAL 99.5 9.6E-14 3.3E-18 120.0 8.4 72 287-383 26-98 (110)
139 2hgn_A Heterogeneous nuclear r 99.5 3.1E-14 1.1E-18 130.0 5.5 79 286-384 44-122 (139)
140 1fxl_A Paraneoplastic encephal 99.5 3.9E-13 1.3E-17 121.5 12.6 78 286-380 86-163 (167)
141 1iqt_A AUF1, heterogeneous nuc 99.5 4.3E-14 1.5E-18 113.3 5.4 74 290-381 1-74 (75)
142 2g4b_A Splicing factor U2AF 65 99.5 1.8E-13 6.3E-18 125.0 10.2 112 249-382 60-171 (172)
143 2fc9_A NCL protein; structure 99.5 1E-13 3.5E-18 117.7 7.8 77 286-383 13-89 (101)
144 2hgl_A HNRPF protein, heteroge 99.5 4.9E-14 1.7E-18 128.2 6.1 78 287-383 43-123 (136)
145 2hzc_A Splicing factor U2AF 65 99.5 1.1E-13 3.7E-18 113.8 7.6 70 287-380 5-85 (87)
146 2lmi_A GRSF-1, G-rich sequence 99.5 5E-14 1.7E-18 121.6 5.8 79 286-383 9-90 (107)
147 2e44_A Insulin-like growth fac 99.4 2.3E-13 7.7E-18 114.3 9.5 78 287-385 14-92 (96)
148 2fc8_A NCL protein; structure 99.4 1.9E-13 6.4E-18 116.1 8.9 78 286-383 13-90 (102)
149 2dnn_A RNA-binding protein 12; 99.4 9.8E-14 3.3E-18 121.5 7.3 76 287-382 15-90 (109)
150 1wel_A RNA-binding protein 12; 99.4 3.6E-14 1.2E-18 125.5 4.6 80 287-384 24-103 (124)
151 1nu4_A U1A RNA binding domain; 99.4 1.2E-13 3.9E-18 116.2 7.5 77 287-383 7-87 (97)
152 2cjk_A Nuclear polyadenylated 99.4 1.1E-13 3.7E-18 125.9 7.8 81 286-384 85-165 (167)
153 1fjc_A Nucleolin RBD2, protein 99.4 9.5E-14 3.2E-18 116.6 6.5 77 285-383 13-89 (96)
154 4f02_A Polyadenylate-binding p 99.4 2E-13 6.9E-18 131.1 9.7 80 287-383 14-93 (213)
155 2f3j_A RNA and export factor b 99.4 2.7E-13 9.2E-18 128.1 10.2 80 287-384 87-166 (177)
156 3pgw_A U1-A; protein-RNA compl 99.4 4.7E-13 1.6E-17 132.8 12.3 74 287-382 206-280 (282)
157 1x5p_A Negative elongation fac 99.4 3.2E-13 1.1E-17 114.1 9.2 72 287-383 14-85 (97)
158 1sjr_A Polypyrimidine tract-bi 99.4 5.5E-13 1.9E-17 125.2 10.8 74 288-382 46-121 (164)
159 2xs2_A Deleted in azoospermia- 99.4 1.5E-13 5E-18 116.9 6.1 79 286-384 7-85 (102)
160 2yh0_A Splicing factor U2AF 65 99.4 5.5E-13 1.9E-17 124.6 10.1 82 286-384 112-193 (198)
161 1wg1_A KIAA1579 protein, homol 99.4 2.4E-13 8.1E-18 113.0 6.8 73 287-383 4-76 (88)
162 1fxl_A Paraneoplastic encephal 99.4 5.1E-13 1.8E-17 120.7 9.6 79 288-383 2-80 (167)
163 2e5g_A U6 snRNA-specific termi 99.4 3.6E-13 1.2E-17 113.1 7.9 73 287-382 7-79 (94)
164 3d2w_A TAR DNA-binding protein 99.4 5.1E-13 1.8E-17 112.0 8.4 73 286-384 9-81 (89)
165 3md3_A Nuclear and cytoplasmic 99.4 5.3E-13 1.8E-17 120.5 9.1 77 289-383 1-77 (166)
166 2cq2_A Hypothetical protein LO 99.4 2.1E-13 7.3E-18 120.7 6.2 63 287-372 24-88 (114)
167 3tyt_A Heterogeneous nuclear r 99.4 4.6E-13 1.6E-17 129.0 9.1 75 287-383 3-78 (205)
168 3egn_A RNA-binding protein 40; 99.4 3.5E-13 1.2E-17 121.7 7.4 78 287-384 44-129 (143)
169 1wf0_A TDP-43, TAR DNA-binding 99.4 5.5E-13 1.9E-17 110.5 7.8 72 287-384 4-75 (88)
170 2dnl_A Cytoplasmic polyadenyla 99.4 5E-13 1.7E-17 116.6 7.6 67 287-368 7-73 (114)
171 2hgm_A HNRPF protein, heteroge 99.4 3.7E-13 1.3E-17 121.0 6.7 77 287-383 41-119 (126)
172 2qfj_A FBP-interacting repress 99.4 1.1E-12 3.7E-17 124.2 10.1 80 286-382 26-105 (216)
173 2e5i_A Heterogeneous nuclear r 99.4 1.9E-12 6.5E-17 116.1 10.9 71 289-382 26-97 (124)
174 2bz2_A Negative elongation fac 99.4 1.2E-12 4.1E-17 116.2 9.5 74 286-384 37-110 (121)
175 3zzy_A Polypyrimidine tract-bi 99.4 1.3E-12 4.5E-17 118.2 9.7 73 289-383 29-102 (130)
176 1b7f_A Protein (SXL-lethal pro 99.4 7.5E-13 2.6E-17 120.2 8.2 80 287-383 2-81 (168)
177 2dha_A FLJ20171 protein; RRM d 99.4 2.5E-13 8.4E-18 121.5 4.7 77 287-382 22-102 (123)
178 3nmr_A Cugbp ELAV-like family 99.4 1.7E-12 5.9E-17 118.4 10.3 72 287-373 2-73 (175)
179 1qm9_A Polypyrimidine tract-bi 99.4 2E-12 6.8E-17 121.5 10.8 74 288-383 120-195 (198)
180 1fje_B Nucleolin RBD12, protei 99.4 1.5E-12 5.2E-17 119.6 9.6 77 285-383 96-172 (175)
181 3u1l_A PRE-mRNA-splicing facto 99.4 1.8E-12 6.3E-17 128.6 10.4 78 285-385 131-229 (240)
182 1l3k_A Heterogeneous nuclear r 99.4 1.4E-12 4.6E-17 121.7 8.9 80 286-383 11-90 (196)
183 2diu_A KIAA0430 protein; struc 99.3 2.6E-12 9E-17 110.1 8.3 71 288-385 8-84 (96)
184 2ghp_A U4/U6 snRNA-associated 99.3 1.4E-12 4.6E-17 130.1 7.3 82 286-384 208-290 (292)
185 3tyt_A Heterogeneous nuclear r 99.3 1.6E-12 5.6E-17 125.2 6.8 70 288-376 123-194 (205)
186 2adc_A Polypyrimidine tract-bi 99.3 4.8E-12 1.6E-16 122.8 10.0 76 286-383 32-108 (229)
187 2pe8_A Splicing factor 45; RRM 99.3 7.4E-12 2.5E-16 108.7 10.1 82 286-383 6-92 (105)
188 1qm9_A Polypyrimidine tract-bi 99.3 3E-12 1E-16 120.3 8.1 76 287-384 2-78 (198)
189 3smz_A Protein raver-1, ribonu 99.3 4.8E-12 1.6E-16 125.7 9.6 81 286-384 182-263 (284)
190 3pgw_A U1-A; protein-RNA compl 99.3 6.4E-12 2.2E-16 124.6 10.2 79 286-384 7-89 (282)
191 2cjk_A Nuclear polyadenylated 99.3 4.5E-12 1.5E-16 115.1 6.8 63 287-366 2-64 (167)
192 3smz_A Protein raver-1, ribonu 99.3 1.9E-11 6.3E-16 121.4 11.0 82 287-385 94-175 (284)
193 2j8a_A Histone-lysine N-methyl 99.2 4.3E-12 1.5E-16 114.7 5.4 77 289-382 3-93 (136)
194 3sde_A Paraspeckle component 1 99.2 1.5E-11 5E-16 121.8 9.5 74 286-382 20-93 (261)
195 3sde_A Paraspeckle component 1 99.2 2.5E-11 8.5E-16 120.1 10.1 79 287-383 95-177 (261)
196 2dit_A HIV TAT specific factor 99.2 5.4E-11 1.9E-15 103.4 9.8 76 287-383 14-100 (112)
197 2g4b_A Splicing factor U2AF 65 99.2 2.6E-11 8.9E-16 110.6 7.8 71 287-381 3-84 (172)
198 3v4m_A Splicing factor U2AF 65 99.2 6.2E-11 2.1E-15 102.8 8.6 82 287-383 4-95 (105)
199 2ghp_A U4/U6 snRNA-associated 99.2 6.3E-11 2.2E-15 118.0 9.5 79 287-383 116-195 (292)
200 2yh0_A Splicing factor U2AF 65 99.1 3.8E-11 1.3E-15 112.0 6.9 72 287-382 3-85 (198)
201 1fje_B Nucleolin RBD12, protei 99.1 1.6E-11 5.5E-16 112.7 2.5 79 286-383 11-89 (175)
202 3tht_A Alkylated DNA repair pr 99.1 8.4E-11 2.9E-15 122.3 7.5 64 287-373 17-82 (345)
203 3ue2_A Poly(U)-binding-splicin 99.1 1.7E-10 6E-15 102.3 7.7 84 287-383 19-107 (118)
204 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.1E-10 2.1E-14 96.1 10.2 64 298-385 27-90 (100)
205 1jmt_A Splicing factor U2AF 35 99.1 8.7E-11 3E-15 101.6 4.6 71 293-381 20-102 (104)
206 3s6e_A RNA-binding protein 39; 99.0 1.3E-09 4.3E-14 96.2 8.6 76 287-383 6-91 (114)
207 1owx_A Lupus LA protein, SS-B, 98.9 2.6E-09 9.1E-14 95.4 8.6 74 287-383 17-94 (121)
208 2dnr_A Synaptojanin-1; RRM dom 98.6 9E-08 3.1E-12 81.2 7.2 74 288-387 7-88 (91)
209 3dxb_A Thioredoxin N-terminall 98.4 4.3E-07 1.5E-11 87.3 8.6 71 300-383 141-211 (222)
210 1ufw_A Synaptojanin 2; RNP dom 98.3 4E-07 1.4E-11 77.7 4.3 68 288-381 15-91 (95)
211 2l9w_A U4/U6 snRNA-associated- 97.4 0.00031 1E-08 61.5 7.1 71 287-380 20-95 (117)
212 2dhx_A Poly (ADP-ribose) polym 96.4 0.017 5.8E-07 49.9 9.2 55 287-366 7-66 (104)
213 1whv_A Poly(A)-specific ribonu 96.2 0.0072 2.5E-07 51.8 6.2 53 290-368 18-70 (100)
214 3ctr_A Poly(A)-specific ribonu 96.0 0.0084 2.9E-07 51.5 5.5 53 290-368 8-60 (101)
215 1wey_A Calcipressin 1; structu 96.0 0.008 2.7E-07 52.0 5.4 72 289-383 6-82 (104)
216 1wwh_A Nucleoporin 35, nucleop 95.8 0.025 8.6E-07 50.1 7.9 69 287-381 23-91 (119)
217 1uw4_A UPF3X; nonsense mediate 95.7 0.031 1.1E-06 47.2 7.7 68 289-371 2-69 (91)
218 3pq1_A Poly(A) RNA polymerase; 95.2 0.0081 2.8E-07 64.6 3.2 57 285-364 50-106 (464)
219 2l08_A Regulator of nonsense t 92.9 0.14 4.8E-06 43.7 5.4 69 288-371 9-77 (97)
220 2kn4_A Immunoglobulin G-bindin 92.7 0.057 1.9E-06 48.3 2.9 25 347-371 13-37 (158)
221 1b34_A Protein (small nuclear 89.8 0.061 2.1E-06 47.4 0.0 7 350-356 66-72 (119)
222 2i2y_A Fusion protein consists 89.2 0.15 5.1E-06 45.4 2.1 33 347-380 13-46 (150)
223 3p3d_A Nucleoporin 53; structu 87.5 0.59 2E-05 42.0 4.8 80 289-374 8-88 (132)
224 3d45_A Poly(A)-specific ribonu 87.4 1.3 4.3E-05 48.1 8.3 57 288-370 440-496 (507)
225 4f25_A Polyadenylate-binding p 85.7 0.09 3.1E-06 45.0 -1.5 18 287-304 96-113 (115)
226 3htx_A HEN1; HEN1, small RNA m 82.3 0.89 3.1E-05 52.4 4.3 89 192-281 102-209 (950)
227 1jh4_B PAIP1, polyadenylate-bi 73.8 1.4 4.9E-05 28.3 1.5 17 37-53 3-19 (26)
228 2l4h_A Calcium and integrin-bi 69.5 1 3.5E-05 42.2 0.2 46 192-239 30-83 (214)
229 1wfx_A Probable RNA 2'-phospho 62.5 3 0.0001 39.5 1.9 50 224-276 22-75 (186)
230 3fry_A Probable copper-exporti 61.5 26 0.0009 26.3 7.0 57 287-367 5-61 (73)
231 3na8_A Putative dihydrodipicol 56.8 15 0.0005 37.1 6.0 32 289-320 151-186 (315)
232 1i4w_A Mitochondrial replicati 54.2 4.7 0.00016 41.7 1.8 23 289-311 143-165 (353)
233 2e1c_A Putative HTH-type trans 53.8 82 0.0028 28.4 10.1 49 300-369 98-146 (171)
234 2qrj_A Saccharopine dehydrogen 50.8 7.3 0.00025 40.9 2.7 18 187-204 36-53 (394)
235 3dxs_X Copper-transporting ATP 50.0 72 0.0024 23.5 7.7 56 289-367 4-63 (74)
236 1d1d_A Protein (capsid protein 47.0 5.4 0.00018 39.7 0.9 28 188-215 31-60 (262)
237 3lqv_A PRE-mRNA branch site pr 45.0 3.3 0.00011 34.5 -0.9 21 294-314 89-109 (115)
238 4a4j_A Pacszia, cation-transpo 43.2 63 0.0022 23.4 6.3 34 289-322 4-37 (69)
239 3tla_A MCCF; serine protease, 43.1 5.1 0.00017 41.7 0.0 11 196-206 61-71 (371)
240 3fwy_A Light-independent proto 39.6 6.2 0.00021 39.8 0.0 9 359-367 203-211 (314)
241 4ec6_A Putative uncharacterize 37.7 5.7 0.0002 36.6 -0.5 31 196-226 56-88 (161)
242 4gyx_A Type III collagen fragm 35.7 18 0.00062 23.6 1.7 19 513-531 4-22 (31)
243 2yjp_A Putative ABC transporte 35.5 7.8 0.00027 37.2 0.0 24 284-309 160-183 (291)
244 3uau_A JLPA, surface-exposed l 33.4 8.9 0.0003 38.3 0.0 22 362-384 309-330 (379)
245 4faj_A PRGZ; substrate binding 32.7 9.3 0.00032 38.5 0.0 8 312-319 358-365 (564)
246 2yjp_A Putative ABC transporte 31.4 10 0.00034 36.4 0.0 17 349-365 186-202 (291)
247 4axs_A Carbamate kinase; oxido 30.8 11 0.00037 38.7 0.1 13 355-367 230-242 (332)
248 3uau_A JLPA, surface-exposed l 30.7 10 0.00036 37.8 0.0 7 192-198 28-34 (379)
249 2hvz_A Splicing factor, argini 29.6 18 0.00061 29.2 1.2 11 287-297 90-100 (101)
250 2i7a_A Calpain 13; calcium-dep 28.9 26 0.00089 31.6 2.4 21 219-239 50-70 (174)
251 3a4u_B Multiple coagulation fa 28.5 18 0.00061 31.5 1.1 16 221-236 74-89 (143)
252 1yg0_A COP associated protein; 28.2 1.5E+02 0.005 20.4 6.8 55 290-367 4-61 (66)
253 1k8w_A TRNA pseudouridine synt 28.2 15 0.00051 37.6 0.6 16 189-204 33-48 (327)
254 2oar_A Large-conductance mecha 28.1 12 0.00042 34.9 0.0 11 239-249 49-60 (174)
255 2h2k_A Protein S100-A13; calci 27.8 7.5 0.00026 32.8 -1.5 61 178-240 26-87 (106)
256 3oc3_A Helicase MOT1, MOT1; re 27.4 7.3 0.00025 43.2 -1.9 10 196-205 48-57 (800)
257 3cio_A ETK, tyrosine-protein k 27.4 13 0.00044 36.9 0.0 14 356-369 250-263 (299)
258 4faj_A PRGZ; substrate binding 26.4 14 0.00047 37.2 0.0 12 302-313 216-227 (564)
259 3jrx_A Acetyl-COA carboxylase 26.4 14 0.00047 40.7 0.0 15 38-52 447-463 (587)
260 2l3m_A Copper-ION-binding prot 25.8 1.8E+02 0.006 20.5 7.4 34 288-321 6-39 (71)
261 2d2a_A SUFA protein; iron-sulf 25.6 22 0.00075 32.0 1.2 16 191-206 41-56 (145)
262 1jr2_A Uroporphyrinogen-III sy 25.4 15 0.00051 35.9 0.0 36 348-383 210-246 (286)
263 2c07_A 3-oxoacyl-(acyl-carrier 25.2 15 0.00051 35.5 0.0 10 375-384 214-223 (285)
264 3gru_A Dimethyladenosine trans 24.8 22 0.00076 35.5 1.2 21 290-310 116-136 (295)
265 1aw0_A Menkes copper-transport 24.5 1.9E+02 0.0064 20.3 6.4 56 289-367 5-64 (72)
266 2hmc_A AGR_L_411P, dihydrodipi 23.9 1.6E+02 0.0054 29.9 7.4 32 289-320 152-186 (344)
267 1q8l_A Copper-transporting ATP 23.8 2.3E+02 0.0079 21.2 7.6 56 289-367 11-70 (84)
268 2ofg_X Zinc-transporting ATPas 23.8 2.5E+02 0.0087 22.7 7.5 33 289-321 10-42 (111)
269 2xmw_A PACS-N, cation-transpor 23.5 1.9E+02 0.0066 20.1 7.9 33 289-321 5-37 (71)
270 2xci_A KDO-transferase, 3-deox 23.4 19 0.00066 36.4 0.4 25 356-383 208-232 (374)
271 1kvi_A Copper-transporting ATP 22.8 2.2E+02 0.0076 20.6 7.5 57 288-367 9-69 (79)
272 1cpz_A Protein (COPZ); copper 22.8 1.9E+02 0.0066 19.9 7.5 32 290-321 3-34 (68)
273 2es4_D Lipase chaperone; prote 22.8 18 0.00061 37.1 0.0 10 201-210 85-94 (332)
274 2c0d_A Thioredoxin peroxidase 22.8 18 0.00061 34.2 0.0 10 143-152 3-12 (221)
275 2px7_A 2-C-methyl-D-erythritol 22.8 18 0.00061 34.2 0.0 10 143-152 3-12 (236)
276 3lpe_A Putative transcription 22.7 1.3E+02 0.0046 24.5 5.4 22 347-368 50-71 (92)
277 2j6v_A UV endonuclease, UVDE; 22.5 49 0.0017 33.0 3.2 23 290-312 192-214 (301)
278 1osd_A MERP, hypothetical prot 22.4 2.1E+02 0.0071 20.1 7.4 56 289-367 5-64 (72)
279 4grv_A Neurotensin receptor ty 22.3 18 0.00063 37.9 0.0 10 143-152 499-508 (510)
280 3dfz_A SIRC, precorrin-2 dehyd 22.1 19 0.00064 34.7 0.0 10 143-152 3-12 (223)
281 1uoz_A Putative cellulase; hyd 22.0 19 0.00065 36.7 0.0 10 143-152 3-12 (315)
282 3cio_A ETK, tyrosine-protein k 22.0 19 0.00065 35.6 0.0 8 261-268 135-142 (299)
283 2g9o_A Copper-transporting ATP 21.5 1.9E+02 0.0064 22.4 6.0 33 289-321 5-37 (90)
284 4e8u_A Putative uncharacterize 21.3 1.5E+02 0.005 27.6 5.9 48 289-356 13-71 (172)
285 1qwz_A NPQTN specific sortase 21.2 30 0.001 33.6 1.2 17 352-368 175-191 (235)
286 3fia_A Intersectin-1; EH 1 dom 21.1 32 0.0011 30.1 1.2 13 225-237 76-88 (121)
287 2wkj_A N-acetylneuraminate lya 21.0 1.4E+02 0.0049 29.5 6.3 31 289-320 139-173 (303)
288 3tcm_A Alanine aminotransferas 20.6 21 0.00072 37.6 0.0 19 301-319 255-276 (500)
289 1jr2_A Uroporphyrinogen-III sy 20.4 21 0.00073 34.8 0.0 15 297-311 138-152 (286)
290 3nnf_A CURA; non-HAEM Fe(II)/a 20.4 41 0.0014 34.3 2.0 49 190-259 22-70 (344)
291 3c3r_A Programmed cell death 6 20.2 22 0.00074 36.8 0.0 8 195-202 40-47 (380)
292 2yln_A Putative ABC transporte 20.1 22 0.00075 33.8 0.0 14 135-148 3-16 (283)
No 1
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=100.00 E-value=1.9e-37 Score=297.66 Aligned_cols=170 Identities=26% Similarity=0.398 Sum_probs=145.2
Q ss_pred CCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcC--cceEEeecc
Q 009251 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKS--SKLVVSEDG 269 (539)
Q Consensus 192 ~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S--~~LeVsedg 269 (539)
...+++.++|++||||||||+||++|.||+++|.++ +|||+|.+|++|+||+.|+.|.+.|++||+.| ..|+|++++
T Consensus 7 ~~~~~~~~~i~~q~e~yfs~~nl~~D~fl~~~~~~~-~g~V~l~~i~sF~r~k~l~~d~~~I~~Al~~S~~~~lev~ed~ 85 (193)
T 2voo_A 7 EKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLD-EGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDK 85 (193)
T ss_dssp --CHHHHHHHHHHHHHHTSTTTGGGCHHHHHHHHHT-TTCEEHHHHTTSHHHHHHCCCHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCcHHHHHHHHHHhheecchhhcccCHHHHHHhccc-CCcEEeHHHhhhhHHHHhcCCHHHHHHHHhhcccceEEEeccc
Confidence 445789999999999999999999999999998766 99999999999999999999999999999999 899999999
Q ss_pred cccccCC--CCcch---hhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCccc
Q 009251 270 KKIKRQN--PLTES---DLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLF 344 (539)
Q Consensus 270 ~kVRRk~--Pl~e~---~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~ 344 (539)
.+|||.. |+++. ..++...++|||+|||.++|+++|+++|++||.|..|+|+++.. +
T Consensus 86 ~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-----------~------- 147 (193)
T 2voo_A 86 TKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-----------K------- 147 (193)
T ss_dssp SEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-----------C-------
T ss_pred ceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-----------C-------
Confidence 9999984 44332 23556789999999999999999999999999999999976531 1
Q ss_pred ccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEE
Q 009251 345 SNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 345 ~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l 381 (539)
..||||||+|++.++|++||+.++ ..+.++-|+|..
T Consensus 148 ~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 148 AFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILF 183 (193)
T ss_dssp CEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEE
T ss_pred CcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEE
Confidence 138999999999999999998655 355555555543
No 2
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=99.95 E-value=7.4e-29 Score=211.83 Aligned_cols=89 Identities=35% Similarity=0.610 Sum_probs=86.3
Q ss_pred CCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccc
Q 009251 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (539)
Q Consensus 191 ~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~ 270 (539)
..+++++.++|++||||||||+||++|.||+++|.++.||||||++|++|+|||+|+.|.++|++||+.|..|+|++||+
T Consensus 4 ~~~~~~~~~~I~~QvEyYFSd~NL~~D~fL~~~m~~~~~G~Vpl~~i~sF~r~k~lt~d~~~i~~al~~S~~lev~edg~ 83 (92)
T 1s29_A 4 MPLSSENKQKLQKQVEFYFSDVNVQRDIFLKGKMAENAEGFVSLETLLTFKRVNSVTTDVKEVVEAIRPSEKLVLSEDGL 83 (92)
T ss_dssp SCCCHHHHHHHHHHHHHHTSHHHHTTCHHHHHHHTTSTTCCEEHHHHTTSHHHHTTCSCHHHHHHHHTTCSSEEECTTSS
T ss_pred CCCCHHHHHHHHHHHHhhcchhhhccCHHHHHHhccCCCCCEEhHHHhCChhHHHHcCCHHHHHHHHhhCCeEEEeCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 009251 271 KIKRQNPLT 279 (539)
Q Consensus 271 kVRRk~Pl~ 279 (539)
+|||+.|++
T Consensus 84 ~VRR~~PlP 92 (92)
T 1s29_A 84 MVRRRDPLP 92 (92)
T ss_dssp EEEESSCCC
T ss_pred EEeCCCCCC
Confidence 999999875
No 3
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=99.92 E-value=1e-26 Score=201.42 Aligned_cols=87 Identities=28% Similarity=0.415 Sum_probs=81.6
Q ss_pred CCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhcCcceEEeeccc
Q 009251 191 GGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRKSSKLVVSEDGK 270 (539)
Q Consensus 191 ~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~S~~LeVsedg~ 270 (539)
....+++.++|++||||||||+||++|.||+++| +.||||||++|++|+|||+|+.|.++|++||+.|..|+|++|++
T Consensus 8 ~~~~~~l~~~I~~QvEyYFSd~NL~~D~fL~~~m--d~~G~Vpl~~iasF~r~k~lt~d~~~i~~al~~S~~levsedg~ 85 (101)
T 2cqk_A 8 AVSTEDLKECLKKQLEFCFSRENLSKDLYLISQM--DSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGE 85 (101)
T ss_dssp SCCHHHHHHHHHHHHHHHTSHHHHHHCHHHHHHS--CTTSCEEHHHHHHCHHHHHHCCCHHHHHHHHHHSSSEEECSSSS
T ss_pred CCCHHHHHHHHHHHHHhhcchhhhccCHHHHHhh--hcCCCEEhHHHhCChHHHHHcCCHHHHHHHHHhCCcEEEcCCCC
Confidence 3456788899999999999999999999999996 68999999999999999999999999999999999999999999
Q ss_pred ccccCCCCc
Q 009251 271 KIKRQNPLT 279 (539)
Q Consensus 271 kVRRk~Pl~ 279 (539)
+|||+.+++
T Consensus 86 kVRr~~~~~ 94 (101)
T 2cqk_A 86 KVRPSHKRC 94 (101)
T ss_dssp EEEECCSCC
T ss_pred eeeeCCCCC
Confidence 999998654
No 4
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=5.4e-17 Score=148.92 Aligned_cols=80 Identities=24% Similarity=0.199 Sum_probs=69.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|+.|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~~ 100 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKK-----------------TACGFCFVEYYSRADAENAMRY 100 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 57899999999999999999999999999999998764321 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..++++-|+|.++.
T Consensus 101 l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 101 INGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TTTSEETTEECEEEEES
T ss_pred hCCCEECCeEEEEEECC
Confidence 99998877777777764
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=135.37 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=69.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+.++|||+|||.++|+++|+++|++||.|..|+|++++.++ .+||||||+|++.++|++||+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG-----------------HSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCC-----------------cccccEEEEECCHHHHHHHHHH
Confidence 56799999999999999999999999999999998764322 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.++-|+|.++
T Consensus 81 lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYA 96 (99)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCEEEEEEEe
Confidence 9999888777777765
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=139.44 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=73.5
Q ss_pred hhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
+....++|||+|||.++++++|+++|+.||.|+.|+|+.++.++ ..+|||||+|++.++|++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETR-----------------QSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTT-----------------EEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHH
Confidence 44567899999999999999999999999999999998764321 1389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEeeecCC
Q 009251 364 IAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~~~~~ 387 (539)
|+.||+..++++.|+|.++..+..
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCCC
Confidence 999999988888788877654433
No 7
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=132.80 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=72.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+. ++ ..+|||||+|++.++|++||+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g-----------------~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TS-----------------KSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TT-----------------TCCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CC-----------------CcccEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998753 11 128999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~ 386 (539)
.||+..++++.|+|.++....
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSS
T ss_pred HhCCCEECCEEEEEEECCCCC
Confidence 999999988889988876433
No 8
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.63 E-value=6.3e-16 Score=135.18 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=70.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||++++++++|+++|++||.|..|+|+++..++ .+||||||+|++.++|++||+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg-----------------~~rG~aFV~f~~~~~A~~Ai~~ 67 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTR-----------------KHLGLARVLFTSTRGAKETVKN 67 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCC-----------------ceeeEEEEEECCHHHHHHHHHH
Confidence 46799999999999999999999999999999998764322 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.++.
T Consensus 68 lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 68 LHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp HTTCEETTEECEEEECS
T ss_pred hCCCEECCeEEEEEECC
Confidence 99999888888887763
No 9
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=1.2e-16 Score=157.10 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCC--CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G--~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+||++++|+++|+++|++|| .|+.|+|++++.++ ..||||||+|++.++|++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 567999999999999999999999999 99999998775322 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++-|+|.++..
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 99999999888899988754
No 10
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=125.53 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=71.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+..++ .++|||||+|++.++|++||+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTG-----------------RSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSC-----------------CCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764321 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.++..
T Consensus 67 l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp HTTCCSSSSCCEEEESSC
T ss_pred hCCCeeCCcEEEEEEccc
Confidence 999998888888887654
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=127.61 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=72.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQ-----------------RSRGFGFVTFENIDDAKDAMMA 73 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSC-----------------SCCSEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997654221 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009251 367 LNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~~ 386 (539)
||+..++++.|+|.+...+.
T Consensus 74 l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 74 MNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HTTCCTTSCCCEEEEEECCC
T ss_pred hCCCEECCeEEEEEECCCCC
Confidence 99999888889988876433
No 12
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=126.46 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=71.0
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQ-----------------RPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTC-----------------SCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CCCceEEEEECCHHHHHHHHH
Confidence 367899999999999999999999999999999997654321 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
|++..++++-|+|.+...+
T Consensus 71 -~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 71 -MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp -HCCCBSSSCBCEEEECCCC
T ss_pred -hCCCEECCeEEEEEECCCC
Confidence 9999988888888877543
No 13
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=127.44 Aligned_cols=82 Identities=26% Similarity=0.195 Sum_probs=70.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTK-----------------KPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTC-----------------CCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997654221 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++-|+|.+...
T Consensus 69 ~l~g~~~~g~~l~V~~a~~ 87 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTI 87 (99)
T ss_dssp HTTTEESSSCEEEEEECCC
T ss_pred HhCCCEECCcEEEEEEcCC
Confidence 9999888777777776654
No 14
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=124.92 Aligned_cols=81 Identities=19% Similarity=0.198 Sum_probs=69.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++|++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997754221 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..++++-|+|.++..
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999988887788877653
No 15
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=128.07 Aligned_cols=83 Identities=23% Similarity=0.342 Sum_probs=72.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+.+..++ .++|||||+|++.++|++||+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 83 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAME 83 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998764321 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++..+
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 84 GLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhcCCEECCcEEEEEeecCC
Confidence 99999988888999887654
No 16
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=3.5e-15 Score=127.72 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=70.0
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..||||||+|++.++|++||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTG-----------------MHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSC-----------------SCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997664321 13899999999999999999
Q ss_pred HHHcCCCC---CCCceEEEEeee
Q 009251 365 AELNDEGN---WRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~---~~~glrV~l~~~ 384 (539)
+.||+..+ +++.|+|.+...
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCC
T ss_pred HHhcCCcccCCCCceEEEEECCc
Confidence 99999876 566677776643
No 17
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=3e-15 Score=132.19 Aligned_cols=86 Identities=23% Similarity=0.354 Sum_probs=74.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+..++ .++|||||+|++.++|++||+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTG-----------------YLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTS-----------------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997653221 238899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCCC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRGSK 388 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~~k 388 (539)
.||+..++++.|+|.++..+..+
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHTTCBSSSSBCEEEESEESSSC
T ss_pred HhCCCeeCCeEEEEEEecCCCCC
Confidence 99999998888999988765444
No 18
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=128.10 Aligned_cols=82 Identities=23% Similarity=0.203 Sum_probs=70.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 75 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTG-----------------QHQGYGFVEFLSEEDADYAIK 75 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------cCCcEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997653211 238899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.++..
T Consensus 76 ~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 76 IMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp HSSSCBCSSCBCEEEETTT
T ss_pred HhCCCeECCeEEEEEECCC
Confidence 9999998888888887643
No 19
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=7.4e-15 Score=157.22 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=70.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+||+.++|+++|+++|++||.|+.|.|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSG-----------------KPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCC-----------------CccceEEEeeccHHHHHHHHHH
Confidence 56799999999999999999999999999999998764321 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+++.-|.|.++..
T Consensus 164 lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERG 181 (437)
T ss_pred cCCCEECCEEEEEEEeCC
Confidence 999988777777777653
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.60 E-value=4.3e-16 Score=131.23 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=63.0
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
+++|||+|||.++|+++|+++|++|| .|+.|+|++++.++ .+||||||+|++.++|++||+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~-----------------~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSG-----------------QSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSC-----------------CCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHHHh
Confidence 46999999999999999999999999 89999998765332 2389999999999999999997
Q ss_pred HcC-CCCCCCceEEEEe
Q 009251 367 LND-EGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~-~~~~~~glrV~l~ 382 (539)
|++ ..+.++-|+|.+.
T Consensus 64 ~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYS 80 (91)
T ss_dssp TTTEEEETTEEEEEECC
T ss_pred cCCCeEECCEEEEEEEc
Confidence 754 3444555555544
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=126.63 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=69.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEE-EEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI-RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~V-rI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|++||.|..| +|+++..++ ..+|||||+|++.++|++|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTG-----------------NSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTC-----------------SCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCC-----------------CcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999999 997653221 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.+...
T Consensus 67 ~l~g~~~~g~~l~v~~a~~ 85 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFK 85 (96)
T ss_dssp TTTTCEETTEECEEEESCC
T ss_pred HcCCCEECCEEEEEEEecc
Confidence 9999988877777777654
No 22
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=5.8e-15 Score=128.28 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=71.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 75 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATG-----------------KSKGYGFVSFFNKWDAENAIQ 75 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999998763221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~ 386 (539)
.||+..++++-|+|.++..+.
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 76 QMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HTTTCEETTEECEEEESSCCC
T ss_pred HhCCCEECCEEEEEEEccCCC
Confidence 999998888778888765433
No 23
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=126.45 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=71.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+ ++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GG-----------------RSKGFGFVCFSSPEEATKAVT 73 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CC-----------------CcCEEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999754 11 128999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..++++.|+|.+...+
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 74 EMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp HHTTCBSSSSBCEEEECSSC
T ss_pred HhCCCEeCCcEEEEEEeccc
Confidence 99999998888888887543
No 24
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=127.60 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=70.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 74 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTK-----------------APRGFAFVRFHDRRDAQDAEAA 74 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSC-----------------SBCSCEEEEESSSSHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CCCeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997654221 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..++++.|+|.++..
T Consensus 75 l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 75 MDGAELDGRELRVQVARY 92 (103)
T ss_dssp HSSCCBTTBCCEEEECSS
T ss_pred cCCCEECCcEEEEEECCc
Confidence 999998888888887653
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=126.13 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=70.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCC-CCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLP-QTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p-~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+.+ +.++ ..+|||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTG-----------------AHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSC-----------------SSCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCC-----------------CcCceEEEEECCHHHHHHHH
Confidence 46789999999999999999999999999999999765 2211 23889999999999999999
Q ss_pred HHH-cCCCCCCCceEEEEeee
Q 009251 365 AEL-NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~L-n~~~~~~~glrV~l~~~ 384 (539)
+.| |+..+.++-|+|.+...
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~ 96 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADS 96 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCC
T ss_pred HHhccCCeECCCEEEEEeCCC
Confidence 999 89888888888887654
No 26
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.2e-15 Score=126.78 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=69.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+. + + ..+|||||+|++.++|++||+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-A----------G-------KPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-T----------S-------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CEEeEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997653 1 1 127999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..++++.|+|.+..
T Consensus 77 ~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 77 KMDGMTIKENIIKVAISN 94 (100)
T ss_dssp HHTTEESSSCEEEEEECC
T ss_pred HhCCCEECCEEEEEEECC
Confidence 999988887777777654
No 27
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.59 E-value=4.7e-15 Score=144.05 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=65.9
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.++|||+|||.++++++|+++|++|| .|..|+|+.. .+|||||+|++.++|++|++.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~~ 208 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 208 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----------------------STTCEEEEESSHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 68999999999999999999999999 9999999531 168999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009251 367 LNDEGNW-RSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~-~~glrV~l~~ 383 (539)
||+..+. ++-|+|.+..
T Consensus 209 l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 209 LHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp HTTCBSSSSCBCEEEECS
T ss_pred HCCCccCCCCeEEEEEec
Confidence 9999887 6777777653
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=128.50 Aligned_cols=82 Identities=27% Similarity=0.311 Sum_probs=70.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.++.++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 75 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTG-----------------QSKGFAFISFHRREDAARAIA 75 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCC-----------------ceeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999998764221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++-|+|.+...
T Consensus 76 ~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 76 GVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp HTTTCEETTEECEEEESSC
T ss_pred HcCCCeeCCcEEEEEECCC
Confidence 9999988777777777643
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=128.15 Aligned_cols=81 Identities=26% Similarity=0.349 Sum_probs=69.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..+|||||+|++.++|++||+.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 73 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAIDN 73 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSC-----------------CCSSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997653321 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..++++-|+|.+...
T Consensus 74 l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 74 MNESELFGRTIRVNLAKP 91 (102)
T ss_dssp HTTEEETTEEEEEEECCC
T ss_pred hCCCEECCcEEEEEeCCC
Confidence 999888777777776543
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=129.91 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=68.3
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...++|||+|||.++|+++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG-----------------KSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSC-----------------CCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997764321 13889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.|++ .+.++-|+|.++.
T Consensus 77 ~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp TCSSC-EETTEECEEEEST
T ss_pred HhCCC-cCCCEEEEEEEcc
Confidence 99987 6666667777654
No 31
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.59 E-value=1.9e-15 Score=129.19 Aligned_cols=80 Identities=23% Similarity=0.254 Sum_probs=70.6
Q ss_pred cceeEEeecCCC------cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHH
Q 009251 287 QSRIVVAENLPE------DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 287 ~~rTVyV~nLP~------d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~A 360 (539)
.+++|||+|||. ++++++|+++|++||.|..|+|++++.++ .+||||||+|++.++|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg-----------------~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATG-----------------KTKGFLFVECGSMNDA 67 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTT-----------------EECSEEEEEESSHHHH
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCC-----------------ccceEEEEEECCHHHH
Confidence 467999999999 99999999999999999999997664321 2389999999999999
Q ss_pred HHHHHHHcCCCCCC-CceEEEEee
Q 009251 361 EKAIAELNDEGNWR-SGLRVRLML 383 (539)
Q Consensus 361 ekAv~~Ln~~~~~~-~glrV~l~~ 383 (539)
++||+.||+..+++ +.|+|.++.
T Consensus 68 ~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 68 KKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp HHHHHHHTTCBSSSSCBCEEEESH
T ss_pred HHHHHHhCCcccCCCeEEEEEECc
Confidence 99999999999888 888888764
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=4.9e-15 Score=120.90 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.+|||+|||.++++++|+++|+.||.|..|+|.++..++ ..+|||||+|++.++|++|++.||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CccceEEEEECCHHHHHHHHHHhc
Confidence 589999999999999999999999999999998663221 138999999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 009251 369 DEGNWRSGLRVRLML 383 (539)
Q Consensus 369 ~~~~~~~glrV~l~~ 383 (539)
+..+.++.|+|.+..
T Consensus 65 g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 65 GQDLNGRPLRINWAA 79 (83)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCeeCCcEEEEEecC
Confidence 998877777777654
No 33
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=2.4e-15 Score=131.71 Aligned_cols=78 Identities=24% Similarity=0.265 Sum_probs=68.2
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..+|||+|||.++|+++|+++|++||.|.+|+|+++.. .+||||||+|++.|+|++||+.|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-------------------~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-------------------CCCceEEEEECCHHHHHHHHHHc
Confidence 45899999999999999999999999999999976521 13899999999999999999999
Q ss_pred cCCCCCCCceEEEEeee
Q 009251 368 NDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 368 n~~~~~~~glrV~l~~~ 384 (539)
++..+.++.|+|.++..
T Consensus 66 ~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp TTCEETTEECEEEESSC
T ss_pred CCCEECCEEEEEEECCC
Confidence 99988877777776543
No 34
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=8e-15 Score=127.27 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=64.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+++|||+|||+++++++|+++|++||.|..|+|+.. ||||||||++.++|++||+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----------------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998532 78999999999999999999
Q ss_pred HcCCC--CCCCceEEEEeee
Q 009251 367 LNDEG--NWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~--~~~~glrV~l~~~ 384 (539)
|++.. +.++.|+|.+...
T Consensus 71 l~~~~~~i~Gr~l~V~~a~~ 90 (104)
T 1wex_A 71 AADVPVYIAGQQAFFNYSTS 90 (104)
T ss_dssp HHHSCCBSSSSBCEEEECSS
T ss_pred hccCCceECCEEEEEEEccC
Confidence 97654 5566677776543
No 35
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.5e-15 Score=128.37 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=69.6
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...++|||+|||.++|+++|+++|+.||.|..|+|+++.. + .+||||||+|++.++|++||
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g-----------------~~rG~aFV~F~~~e~a~~Ai 69 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-K-----------------AFKGSIFVVFDSIESAKKFV 69 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-T-----------------SCCCEEEEEESSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-C-----------------CCccEEEEEECCHHHHHHHH
Confidence 44678999999999999999999999999999999987632 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+ +++..+.++.|.|....
T Consensus 70 ~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 70 E-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp T-SSCCCCTTTTCEEEEHH
T ss_pred H-cCCCEECCEEEEEEEch
Confidence 9 89988888888887643
No 36
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.58 E-value=4.1e-15 Score=125.36 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=68.6
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+++|||+|||.++++++|+++|++||.|..|+|..+..++ ..+|||||+|++.++|++|++.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTG-----------------RSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTC-----------------CBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHHHh
Confidence 5799999999999999999999999999999997653221 23889999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..+.++.|+|.+..
T Consensus 65 ~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSS 80 (96)
T ss_dssp TTCEETTEECEEEECS
T ss_pred CCCeECCeEEEEEEcC
Confidence 9998877777777654
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=1.6e-15 Score=126.83 Aligned_cols=79 Identities=16% Similarity=0.098 Sum_probs=66.0
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCC--CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G--~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+|||+|||.++|+++|+++|+.|| .|..|+|+.++.++ .+||||||+|++.++|++||+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g-----------------~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANG-----------------QSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTC-----------------CEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCC-----------------ccCcEEEEEECCHHHHHHHHHH
Confidence 4899999999999999999999999 99999998764322 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.+...
T Consensus 65 l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp GGGSCSSSCCCEECCC--
T ss_pred cCCCeeCCEEEEEEECCC
Confidence 999998888888876653
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.58 E-value=7.9e-15 Score=125.24 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=69.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..|+|+.+.+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~Ai~~ 75 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-----------G-------SSKGCAFVKFSSHTEAQAAIHA 75 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS-----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CcCcEEEEEeCCHHHHHHHHHH
Confidence 578999999999999999999999999999999976531 1 2389999999999999999999
Q ss_pred HcCCCCCC---CceEEEEeee
Q 009251 367 LNDEGNWR---SGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~---~glrV~l~~~ 384 (539)
||+..+.+ +.|+|.++..
T Consensus 76 l~g~~~~gg~~~~l~V~~a~~ 96 (105)
T 2dnh_A 76 LHGSQTMPGASSSLVVKFADT 96 (105)
T ss_dssp HSSCCCCTTCSSCCEEEESCS
T ss_pred HcCCccCCCCCccEEEEECcc
Confidence 99988776 7788887654
No 39
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.3e-15 Score=127.40 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=68.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTE-----------------HSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSC-----------------CBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CCccEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997664321 138999999999999999999
Q ss_pred HHc------CCCCCCCceEEEEee
Q 009251 366 ELN------DEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln------~~~~~~~glrV~l~~ 383 (539)
.|| +..++++-|+|.+..
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCC
T ss_pred HhccccccCCcEEcCEEEEEEECC
Confidence 999 777766666666554
No 40
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=4.8e-15 Score=128.44 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=62.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+++|||+|||+++|+++|+++|++||.|++|+|++. ||||||||++.++|++||+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~AFVef~~~~~A~~Av~~ 76 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----------------------KRQALVEFEDVLGACNAVNY 76 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5789999999999999999999999999999999632 78999999999999999999
Q ss_pred HcCCCCC--CCceEEEEe
Q 009251 367 LNDEGNW--RSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~--~~glrV~l~ 382 (539)
|++..+. ++.|+|.+.
T Consensus 77 ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 77 AADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp HHHSCEEETTEEEEEEEC
T ss_pred hcCCCceeCCcEEEEEec
Confidence 9987643 444555443
No 41
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.6e-15 Score=127.36 Aligned_cols=78 Identities=23% Similarity=0.241 Sum_probs=67.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|..++ ..+|||||+|++.++|++||+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~--------------------~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR--------------------GGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS--------------------SSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--------------------CCCcEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999995431 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..++++.|+|.+..
T Consensus 80 ~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HcCCCEECCeEEEEEEcc
Confidence 999998777767776653
No 42
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-15 Score=132.22 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=61.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|++||.|++|+|+++ ||||||||++.++|++||+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kGfaFVeF~~~~~A~~Ai~~ 71 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 71 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5679999999999999999999999999999999642 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEe
Q 009251 367 LND--EGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~--~~~~~~glrV~l~ 382 (539)
|++ ..+.++.|+|.+.
T Consensus 72 l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 72 YTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp HTTSCCEETTEECCBCCC
T ss_pred hccCCceECCEEEEEEEc
Confidence 875 3444444444443
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=5.7e-15 Score=127.37 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=71.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+.++.++ ..+|||||+|++.++|++||+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTS-----------------SBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997653221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..++++.|+|.+...+
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 99999988887888876543
No 44
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.7e-15 Score=130.37 Aligned_cols=83 Identities=27% Similarity=0.285 Sum_probs=70.6
Q ss_pred hhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
.++...++|||+|||.++++++|+++|+.||.|..|+|+.++.++ ..+|||||+|++.++|++
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~ 82 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR-----------------RSKGIAYVEFCEIQSVPL 82 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSS-----------------SCCCCEEEEESCGGGHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCC-----------------ccCcEEEEEeCcHHHHHH
Confidence 345577899999999999999999999999999999997664321 138899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009251 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~ 383 (539)
|| .||+..++++-|+|.+..
T Consensus 83 A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 83 AI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HH-HHTTEEETTEEEEEEEHH
T ss_pred HH-HcCCCEeCCeEEEEEecC
Confidence 99 899998877777777654
No 45
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=3.1e-15 Score=130.20 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=69.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.+..++ .++|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-----------------LSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCC-----------------CcCccEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++-|+|.+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HcCCCEECCEEEEEEEcC
Confidence 999988777767776654
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.58 E-value=2.7e-15 Score=123.57 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=69.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|..+..++ ...+|||||+|++.++|++|++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~----------------~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHP----------------HLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEE----------------EEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCC----------------CCCCcEEEEEEecHHHHHHHHHH
Confidence 56899999999999999999999999999999996653210 11388999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.++.
T Consensus 67 l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVL 83 (88)
T ss_dssp HTTCEETTEECEEEEEC
T ss_pred cCCCeECCeEEEEEECC
Confidence 99999887777777664
No 47
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=131.81 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=66.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+++|||+|||+++|+++|+++|+.||.|+.|+|+.+ ||||||||++.++|++||+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999999642 78999999999999999999
Q ss_pred HcC--CCCCCCceEEEEeeecC
Q 009251 367 LND--EGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 Ln~--~~~~~~glrV~l~~~~~ 386 (539)
|++ ..+.++.|+|.+...+.
T Consensus 87 l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 87 YTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHCCCBTTBCCEEEECSSSS
T ss_pred hccCCceECCeEEEEEEccCCC
Confidence 884 45667778888765433
No 48
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.57 E-value=3.2e-15 Score=122.57 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=67.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|.++..+ + ..+|||||+|++.++|++|++.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~a~~A~~~ 68 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET----------E-------KHRGFAFVEFELAEDAAAAIDN 68 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC----------C-------ccccEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999998665321 1 1388999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.++.|+|.++
T Consensus 69 l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 69 MNESELFGRTIRVNLA 84 (85)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred hCCCEECCcEEEEEEc
Confidence 9999887777777653
No 49
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.57 E-value=6.4e-15 Score=125.91 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=66.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|++.++|++||+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~~ 64 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAMEE 64 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999983 56999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeecC
Q 009251 367 LNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~~ 386 (539)
||+..++++.|+|.+...+.
T Consensus 65 l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 65 MNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp HTTEEETTEEEEEEECCCCC
T ss_pred HCCCccCCCEEEEEEcCCCc
Confidence 99998887777777765433
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-15 Score=125.22 Aligned_cols=79 Identities=25% Similarity=0.315 Sum_probs=68.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+.+.. ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT-------------------SNDPYCFVEFYEHRDAAAALA 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC-------------------SSCCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC-------------------CCCCEEEEEECCHHHHHHHHH
Confidence 4678999999999999999999999999999999986531 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..++++-|+|.+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 74 AMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp HHTTEEETTEEEEEEECC
T ss_pred HhCCCCcCCCeEEEEECC
Confidence 999998877777777654
No 51
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3.3e-15 Score=129.60 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=64.2
Q ss_pred cceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+|+++ |+||||||++.++|++||+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----------------------INEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 9999999999999999999999642 6799999999999999999
Q ss_pred HHcCCC--CCCCceEEEEee
Q 009251 366 ELNDEG--NWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~--~~~~glrV~l~~ 383 (539)
.||+.. +.++.|+|.++.
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQ 90 (102)
T ss_dssp HHHHSCCEETTEECEEEEEC
T ss_pred HHcCCCceECCcEEEEEECC
Confidence 998654 556667776654
No 52
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=128.54 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCC--eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGS--VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~--V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
-.||||+|||.++|+++|+++|++||. |..|+|++++.++ .+||||||+|++.++|++||+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~srG~aFV~f~~~~~A~~Ai~ 71 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQ-----------------QNRGFAFVQLSSAMDASQLLQ 71 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSS-----------------SCSSEEEEECSSSHHHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCC-----------------CCceEeEEEECCHHHHHHHHH
Confidence 359999999999999999999999995 7789987764322 238999999999999999999
Q ss_pred HHcCCC----CCCCceEEEE
Q 009251 366 ELNDEG----NWRSGLRVRL 381 (539)
Q Consensus 366 ~Ln~~~----~~~~glrV~l 381 (539)
.||+.. +.++.|+|.+
T Consensus 72 ~lng~~~~~~i~Gr~i~V~~ 91 (95)
T 2lkz_A 72 ILQSLHPPLKIDGKTIGVDF 91 (95)
T ss_dssp HHHSSSSCEEETTEEEEEEE
T ss_pred HhcCCCCCceECCEEEEEEE
Confidence 999864 3344455544
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=123.62 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=70.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.+.. ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------------------~~~g~afV~f~~~~~a~~A~~ 73 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRARE 73 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT-------------------TTCCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC-------------------CCcEEEEEEECCHHHHHHHHH
Confidence 3578999999999999999999999999999999976521 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..++++-|+|.+...+
T Consensus 74 ~l~g~~~~g~~l~v~~a~~~ 93 (103)
T 2cq3_A 74 KLHGTVVEGRKIEVNNATAR 93 (103)
T ss_dssp HHTTCEETTEECEEEECCSS
T ss_pred HhCCCEECCEEEEEEEcccC
Confidence 99999888777887776543
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=123.92 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=67.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+..++ .++|||||+|++.++|++|++.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 77 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTR-----------------KSKGVAFILFLDKDSAQNCTRA 77 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSC-----------------CCTTCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56799999999999999999999999999999997654321 1378999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..++++-|+|.++
T Consensus 78 l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 78 INNKQLFGRVIKASIA 93 (94)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeeCCcEEEEEec
Confidence 9998877776776653
No 55
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.57 E-value=8.7e-15 Score=128.27 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=60.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|++||+|..|+|+. .|||||+|++.++|++||+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT------------------------TSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 457999999999999999999999999999999842 26999999999999999999
Q ss_pred HcCCCCCCCceEE
Q 009251 367 LNDEGNWRSGLRV 379 (539)
Q Consensus 367 Ln~~~~~~~glrV 379 (539)
||+..+.++-++|
T Consensus 71 l~g~~~~gr~~~~ 83 (115)
T 3beg_B 71 LDNTKFRSHEGET 83 (115)
T ss_dssp HTTCBCCCTTSCC
T ss_pred hCCCEECCcEeee
Confidence 9999877766443
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.57 E-value=9.4e-15 Score=123.83 Aligned_cols=79 Identities=19% Similarity=0.268 Sum_probs=69.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeE--------EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~--------VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E 358 (539)
..++|||+|||.++++++|+++|++||.|.. |+|..++.++ ..+|||||+|++.+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~G~afV~f~~~~ 74 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDPP 74 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTC-----------------SEEEEEEEEBSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCC-----------------CeeeEEEEEECCHH
Confidence 5679999999999999999999999999999 9997764321 13899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEe
Q 009251 359 LAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
+|++|++.||+..+.++-|+|.++
T Consensus 75 ~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 75 SAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEec
Confidence 999999999999988888888764
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.57 E-value=4.2e-15 Score=122.91 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=67.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++|+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~- 65 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSG-----------------HPKGFAYIEFSDKESVRTSL- 65 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSS-----------------SCCEEEEEEESSTHHHHHHG-
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-----------------CcceEEEEEECCHHHHHHHH-
Confidence 467899999999999999999999999999999998764321 12899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..+.++-|+|.+.
T Consensus 66 ~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 66 ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp GGTTCEETTEECEEEET
T ss_pred hcCCCEECCcEEEEEEc
Confidence 89999877766666654
No 58
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.7e-15 Score=128.49 Aligned_cols=82 Identities=24% Similarity=0.311 Sum_probs=69.4
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCee--------EEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVK--------TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~--------~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
+...++|||+|||.++|+++|+++|++||.|. .|+|+.++.++ ..+|||||+|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG-----------------KPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC-----------------SBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC-----------------CeeeEEEEEECC
Confidence 44678999999999999999999999999999 68887653221 238899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
.++|++||+.||+..++++.|+|.+..
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLAR 101 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSS
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECC
Confidence 999999999999998877777776654
No 59
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.5e-15 Score=126.21 Aligned_cols=74 Identities=20% Similarity=0.176 Sum_probs=64.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|+.|+|+. .|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~------------------------~g~afV~f~~~~~a~~Ai~~ 69 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR------------------------DGTGVVEFVRKEDMTYAVRK 69 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec------------------------CCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999953 16999999999999999999
Q ss_pred HcCCCCCC-----CceEEEEeee
Q 009251 367 LNDEGNWR-----SGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~-----~glrV~l~~~ 384 (539)
||+..+.+ +-|+|.++..
T Consensus 70 l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 70 LDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp SSSEEEECTTSCEEEEEEEESSC
T ss_pred HCcCCccCCcCcceEEEEEeCCC
Confidence 99988766 5566666543
No 60
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.9e-15 Score=125.38 Aligned_cols=80 Identities=19% Similarity=0.261 Sum_probs=67.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.|| |..|+|+++..+. ...+|||||+|++.++|++|| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~----------------g~~~g~afV~f~~~~~a~~A~-~ 75 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP----------------ERLKGFGYAEFEDLDSLLSAL-S 75 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCT----------------TSBCSCEEEEESSHHHHHHHH-G
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCC----------------CCcCeEEEEEECCHHHHHHHH-h
Confidence 568999999999999999999999999 9999997654220 123889999999999999999 8
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++-|+|.+...
T Consensus 76 l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 76 LNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp GGTCEETTEECEEEECCC
T ss_pred cCCCEeCCcEEEEEEccC
Confidence 999988777777777654
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=6.6e-15 Score=132.10 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=69.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++||+.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~~ 107 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKER 107 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSS-----------------CCCCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998764321 1289999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..++++.|+|.+..
T Consensus 108 lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 108 ANGMELDGRRIRVDFSI 124 (129)
T ss_dssp HTTCCSSSSCCEESCCS
T ss_pred hCCCEECCEEEEEEEec
Confidence 99998888777777654
No 62
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.7e-14 Score=120.17 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=66.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+ |+||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~~ 61 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIRN 61 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999983 57999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..++++.|+|.+...
T Consensus 62 l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 62 LHHYKLHGVNINVEASKN 79 (90)
T ss_dssp HTTCBCSSCBCEEECSSC
T ss_pred hcCCccCCcEEEEEECCC
Confidence 999988888888887643
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.3e-15 Score=125.01 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=68.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCee-EEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK-TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~-~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|++||.|. .|+|++++.++ ..+|||||+|++.++|++|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTG-----------------IPAGYCFVEFADLATAEKCLH 70 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSC-----------------CEEEEEEEECSCHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCC-----------------CcCCEEEEEeCCHHHHHHHHH
Confidence 568999999999999999999999999999 99998764321 238999999999999999999
Q ss_pred HHcCCCCCCCc----eEEEEe
Q 009251 366 ELNDEGNWRSG----LRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~g----lrV~l~ 382 (539)
.||+..+.++. |+|.++
T Consensus 71 ~l~g~~~~g~~~~~~l~v~~a 91 (99)
T 2div_A 71 KINGKPLPGATPAKRFKLNYA 91 (99)
T ss_dssp TTTTSEESSCSSCEECCEEET
T ss_pred HHcCCccCCCCcceeEEEeec
Confidence 99998887777 666654
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.8e-15 Score=123.47 Aligned_cols=79 Identities=22% Similarity=0.186 Sum_probs=67.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+..++ ..+|||||+|++.++|++|++.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~~ 76 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSR-----------------RSRGFAFVYFENVDDAKEAKER 76 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSS-----------------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCC-----------------CcccEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997654221 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..++++-|+|.+.
T Consensus 77 l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 77 ANGMELDGRRIRVSGP 92 (95)
T ss_dssp HTTEEETTEEEEEECC
T ss_pred hCCCEECCEEEEEEec
Confidence 9998877666666543
No 65
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=123.48 Aligned_cols=79 Identities=23% Similarity=0.259 Sum_probs=68.0
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.+.. + ..+|||||+|++.++|++|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-----------G-------KPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-----------S-------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-----------C-------CCceEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999976531 1 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..++++-|+|.+.
T Consensus 76 ~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGP 92 (95)
T ss_dssp HHTTCEETTEECEEECC
T ss_pred HhCCCEECCCEEEEEEc
Confidence 99999887776766654
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.56 E-value=5.1e-15 Score=129.23 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=69.1
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTS-----------------LSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSS-----------------CCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCC-----------------CcCcEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999999999997664321 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEe
Q 009251 365 AELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~ 382 (539)
+.||+..++++-|+|.+.
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 999998877776776653
No 67
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=6.6e-15 Score=139.49 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=71.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+..++ .++|||||+|++.++|++|++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG-----------------KHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcCceEEEEecCHHHHHHHHH
Confidence 456899999999999999999999999999999998764221 238899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++-|+|.++...
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSC
T ss_pred HccCCEeCCcEEEEEEecCC
Confidence 99999988888888876543
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.9e-15 Score=126.16 Aligned_cols=82 Identities=30% Similarity=0.368 Sum_probs=71.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+.++.++ .++|||||+|++.++|++|++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 68 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETG-----------------KPKGYGFCEYQDQETALSAMR 68 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTT-----------------EEEEEEEEECSCHHHHHHHHH
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.+...
T Consensus 69 ~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 69 NLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSSSBSCSSSCBEEEETTC
T ss_pred HhCCCeeCCcEEEEEeCCC
Confidence 9999998888888887643
No 69
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=124.52 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=69.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+.+ + ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-----------g-------~~~g~afV~f~~~~~a~~A~~~ 75 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-----------G-------KSRGIGTVTFEQSIEAVQAISM 75 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-----------C-------SEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CeeeEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999999999976531 1 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..++++-|+|.+...
T Consensus 76 l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 76 FNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp HTTCEETTEECEEEECSC
T ss_pred hCCCEeCCCEEEEEEccc
Confidence 999988877777777543
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=126.39 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=70.7
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+++..++ ..+|||||+|++.++|++|++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~Ai~ 86 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETG-----------------RSKGYGFITFSDSECAKKALE 86 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTT-----------------EEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997653211 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 87 ~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 87 QLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp HHTTCCSSSSCCEEECSC
T ss_pred HcCCCEECCEEEEEEEcc
Confidence 999999888888888654
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=5.9e-15 Score=124.50 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=68.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+.... + ....+|||||+|++.++|++||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---------g-----t~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKA---------G-----VLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTT---------C-----CEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC---------C-----CcCcccEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653200 0 012389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.+..
T Consensus 70 l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISE 86 (98)
T ss_dssp STTCEETTEECEEECSS
T ss_pred hCCCeeCCeEEEEEEcc
Confidence 99998777767766654
No 72
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=125.27 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=63.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+++|||+|||+++++++|+++|+.||.|..|+|+.+ ||||||||++.++|++||+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~~ 70 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----------------------KNQAFLELATEEAAITMVNY 70 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5679999999999999999999999999999998632 78999999999999999998
Q ss_pred HcC--CCCCCCceEEEEeee
Q 009251 367 LND--EGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~--~~~~~~glrV~l~~~ 384 (539)
|++ ..+.++.|+|.+...
T Consensus 71 l~~~~~~~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 71 YSAVTPHLRNQPIYIQYSNH 90 (101)
T ss_dssp HHHSCCEETTEECEEEECSC
T ss_pred hccCCceECCcEEEEEEcCc
Confidence 864 345555666666543
No 73
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.55 E-value=1.1e-14 Score=124.66 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=68.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|+.|+|+++. + + ..+|||||+|++.++|++||+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~~ 89 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-S----------G-------RSLGTADVHFERKADALKAMKQ 89 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-T----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998653 1 1 1289999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.++-|+|.++
T Consensus 90 l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 90 YNGVPLDGRPMNIQLV 105 (107)
T ss_dssp HTTCEETTEECEEEEE
T ss_pred hCCCEeCCcEEEEEEe
Confidence 9999988877888765
No 74
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=121.59 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=66.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|... ||||||+|++.++|++|++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------------------~g~afV~f~~~~~A~~A~~~ 72 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----------------------DSFAYIQYESLDAAQAACAK 72 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----------------------SCCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5689999999999999999999999999999998431 67999999999999999999
Q ss_pred HcCCCCC--CCceEEEEee
Q 009251 367 LNDEGNW--RSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~--~~glrV~l~~ 383 (539)
||+..+. ++-|+|.+..
T Consensus 73 l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 73 MRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp HTTCBCSSSSCBCEEEECC
T ss_pred HCCCEeCCCCcEEEEEECC
Confidence 9999888 6677777654
No 75
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.9e-14 Score=121.55 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=67.7
Q ss_pred ccceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||. ++++++|+++|++||.|..|+|. ||||||+|++.++|++|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3578999999998 99999999999999999999982 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+.||+..++++-|+|.+...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEEC
T ss_pred HHcCCCeeCCcEEEEEEcCc
Confidence 99999999888899988754
No 76
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=125.53 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=68.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.. .++||||+|++.++|++||+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~ 64 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFR 64 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHH
Confidence 3568999999999999999999999999999998842 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.++..
T Consensus 65 ~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 65 HLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HHTTCBSSSSBCEEEEEET
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999998888899888754
No 77
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=122.15 Aligned_cols=75 Identities=28% Similarity=0.333 Sum_probs=68.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..|+|.++ ||||||+|++.++|++|++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----------------------kg~afV~f~~~~~a~~a~~~ 70 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----------------------KGFGFIRLETRTLAEIAKVE 70 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----------------------TTEEEEECSSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 5679999999999999999999999999999999532 78999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
|++..+.++.|+|.+...
T Consensus 71 l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 71 LDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp HTTCCBTTBCCEEEESSC
T ss_pred hCCCEeCCceEEEEEcCC
Confidence 999998888888887654
No 78
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=1.8e-14 Score=119.95 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=69.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+++. + ..+|||||+|++.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~------------g-------~~~g~afV~f~~~~~a~~a~~~ 67 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN------------G-------KSKGCGVVKFESPEVAERACRM 67 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS------------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC------------C-------CcceEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999997531 1 1389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
|++..+.++-|+|.+...
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 68 MNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp HTTCCBTTBCCCCEECSC
T ss_pred hCCCEECCcEEEEEEcCC
Confidence 999998888888877643
No 79
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=123.30 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=68.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhc-CCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSA-VGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~-~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++|+++|+++|+. ||.|..|+|+.+. ++ ..+|||||+|++.++|++||+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g-----------------~~~g~afV~f~~~~~a~~A~~ 69 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TG-----------------VSKGYGFVKFTDELEQKRALT 69 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TC-----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CC-----------------CccceEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999 9999999998763 11 138999999999999999999
Q ss_pred HHcCCC-CCCCceEEEEee
Q 009251 366 ELNDEG-NWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~-~~~~glrV~l~~ 383 (539)
.|++.. +.++.|+|.+..
T Consensus 70 ~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 70 ECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp HTTTCCSSSSSCCCCCBCC
T ss_pred HccCCcccCCEeEEEEEcc
Confidence 999988 777777776654
No 80
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=120.76 Aligned_cols=74 Identities=26% Similarity=0.241 Sum_probs=66.7
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+ ++||||+|++.++|++||+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~~ 61 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAIA 61 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999984 4589999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.+...
T Consensus 62 ~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 62 QLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HhCCCEECCcEEEEEECCC
Confidence 9999988887788877654
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.54 E-value=3.7e-14 Score=129.74 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=70.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|..+..++ ..+|||||+|++.++|++||+
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCT-----------------TSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997664321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++-|+|.+...
T Consensus 131 ~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp HSTTEESSSSEEEEEEECC
T ss_pred HhCCCEECCeEEEEEECCC
Confidence 9999988777777777653
No 82
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=128.70 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=65.2
Q ss_pred cceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+++|||+|||++ +++++|+++|+.||.|.+|+|++. ||||||||++.++|++||+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-----------------------kg~aFVef~~~~~A~~Ai~ 80 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-----------------------KSQAFIEMETREDAMAMVD 80 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 4789999999998 999999999999999999999532 7899999999999999999
Q ss_pred HHcCC--CCCCCceEEEEeee
Q 009251 366 ELNDE--GNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~--~~~~~glrV~l~~~ 384 (539)
.|++. .+.++.|+|.+...
T Consensus 81 ~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 81 HCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp HHHHSCCCSSSSCCEEEEECS
T ss_pred HhccCCceECCEEEEEEECcc
Confidence 98754 46677788887643
No 83
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=122.50 Aligned_cols=78 Identities=21% Similarity=0.216 Sum_probs=68.0
Q ss_pred cceeEEeecCCCcccHHHHH----HHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~----e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
..++|||+|||.++++++|+ ++|++||.|..|+|..++. . ||||||+|++.++|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~------------------~--rg~afV~f~~~~~A~~ 67 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD------------------Y--QLKAVVQMENLQDAIG 67 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS------------------T--TCCEEEEESSHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC------------------C--CeEEEEEECCHHHHHH
Confidence 45799999999999999999 9999999999999976531 1 6799999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009251 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~~ 384 (539)
||+.||+..+.++-|+|.++..
T Consensus 68 Ai~~l~g~~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 68 AVNSLHRYKIGSKKILVSLATG 89 (96)
T ss_dssp HHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHhCCCEECCeEEEEEEcCC
Confidence 9999999988777777777643
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=1.9e-14 Score=122.75 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=67.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.|| |..|+|++++.++ .++|||||+|++.++|++|| .
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~-~ 74 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTD-----------------KFKGFCYVEFDEVDSLKEAL-T 74 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHG-G
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCC-----------------ccceEEEEEECCHHHHHHHH-h
Confidence 568999999999999999999999997 9999998764321 23899999999999999999 8
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.+..
T Consensus 75 l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAE 91 (103)
T ss_dssp GTTCEETTEECEEEECC
T ss_pred hCCCeECCeEEEEEEec
Confidence 99988877777777654
No 85
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=124.79 Aligned_cols=76 Identities=20% Similarity=0.177 Sum_probs=67.3
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++++++|+++|+.||.|..|+|+.+ +|||||+|++.++|++||
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~ 78 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAI 78 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999999642 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.|++..++++.|+|.+..
T Consensus 79 ~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 79 VSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp HHHTTCEETTEECEEECCC
T ss_pred HHcCCCEECCcEEEEEecC
Confidence 9999998777767776654
No 86
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.1e-15 Score=117.64 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=65.6
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
++|||+|||.++++++|+++|++||.|..|+|..+..++ .++|||||+|++.++|++|++.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSS-----------------SCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCC-----------------CcCceEEEEEcCHHHHHHHHHhCC
Confidence 589999999999999999999999999999997654221 138899999999999999999988
Q ss_pred CCCCCCCceEEEEe
Q 009251 369 DEGNWRSGLRVRLM 382 (539)
Q Consensus 369 ~~~~~~~glrV~l~ 382 (539)
..+.++.|+|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 7777777887764
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=7.3e-15 Score=127.68 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=70.8
Q ss_pred hccceeEEeecCCCcccHHHHH---HHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLM---KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~---e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
.++.++|||+|||.++++++|+ ++|++||.|..|+|..+..++. + ...+|||||+|++.++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~-------~-------~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAG-------S-------QGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCS-------S-------SCCCEEEEEEESSHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCc-------c-------CCCCeEEEEEECcHHHHH
Confidence 3467899999999999999999 9999999999999977643211 1 123799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009251 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
+||+.||+..++++-|+|.++..
T Consensus 78 ~Ai~~lng~~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 78 RAIQCVNNVVVDGRTLKASLGTT 100 (111)
T ss_dssp HHHHHHTTEEETTEEEEEESCCC
T ss_pred HHHHHhCCCEECCEEEEEEeccc
Confidence 99999999988777777766543
No 88
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=119.99 Aligned_cols=73 Identities=26% Similarity=0.219 Sum_probs=65.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|. ++||||+|++.++|++|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 62 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAIR 62 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999983 4599999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++-|+|.+..
T Consensus 63 ~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 63 GLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp HHTTEEETTEEEEEEESS
T ss_pred HhCCCeeCCcEEEEEEcc
Confidence 999998877777777654
No 89
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.53 E-value=1e-14 Score=123.60 Aligned_cols=72 Identities=21% Similarity=0.153 Sum_probs=66.7
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+..|||+||++.+|+++|+++|.+||+|++++|.. +||||||||.++++|++|++.|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~L 63 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMAL 63 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHHh
Confidence 45899999999999999999999999999999853 2899999999999999999999
Q ss_pred cCCCCCCCceEEEEe
Q 009251 368 NDEGNWRSGLRVRLM 382 (539)
Q Consensus 368 n~~~~~~~glrV~l~ 382 (539)
|+..+.++.|+|.++
T Consensus 64 n~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 64 NNCVLANTTIFAESP 78 (89)
T ss_dssp TTEEETTEEEEEECC
T ss_pred cCCEECCcEEEEEEC
Confidence 999999998988876
No 90
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=1.5e-14 Score=125.56 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=64.7
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ .++|||||+|++.++|++||+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg-----------------~~kg~afV~f~~~~~A~~Ai~ 85 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTK-----------------RSRGFGFVTFMDQAGVDKVLA 85 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTC-----------------CCTTCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997764321 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.++ ..+.++-|+|.++..
T Consensus 86 ~~~-~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 86 QSR-HELDSKTIDPKVAFP 103 (109)
T ss_dssp SSC-EEETTEEEEEEECCC
T ss_pred HCC-CcCCCEEEEEEEccC
Confidence 764 555555666666543
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-14 Score=123.28 Aligned_cols=80 Identities=21% Similarity=0.187 Sum_probs=68.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+. + + ..+|||||+|++.++|++||+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-S----------G-------TSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-S----------S-------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999997653 1 1 138999999999999999999
Q ss_pred HHcCCCC--------CCCceEEEEee
Q 009251 366 ELNDEGN--------WRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~--------~~~glrV~l~~ 383 (539)
.||+..+ +.+.|.|.++.
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred HhCCCEEcCCccccCCCCceeEEccC
Confidence 9999887 55667777654
No 92
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=134.63 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=69.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCC--CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVG--SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G--~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+|||.++|+++|+++|+.|| .|..|+|+.++.++ ..||||||+|++.++|++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg-----------------~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANG-----------------QSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHH
Confidence 457999999999999999999999999 99999998775332 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++-|+|.++..
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 99999998888788877643
No 93
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.3e-14 Score=121.15 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=66.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|. ++|+.. ..+|||||+|++.++|++||+.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~~ 75 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVSC 75 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 568999999999999999999999999997 666432 1288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++.|+|.+...
T Consensus 76 l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 76 LQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp HTTCCSSSSCCEEEECCC
T ss_pred hCCCEECCcEEEEEEcCC
Confidence 999998888888887653
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=3.7e-14 Score=125.14 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=70.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|+.+. + + ..+|||||+|++.++|++||+.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~A~~Ai~~ 95 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S----------G-------RSLGTADVHFERRADALKAMKQ 95 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-S----------S-------SCCSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-C----------C-------CEeeEEEEEECCHHHHHHHHHH
Confidence 56899999999999999999999999999999998653 1 1 1288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++-|+|.++..
T Consensus 96 l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 96 YKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp HTTEESSSCEEEEEEECC
T ss_pred cCCCEECCcEEEEEEeCC
Confidence 999988888888887754
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.53 E-value=1.5e-14 Score=119.48 Aligned_cols=77 Identities=13% Similarity=0.194 Sum_probs=63.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+++..++ ..+|||||+|++.++|++|++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 71 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTG-----------------RSRGFGFILFKDAASVEKVLD 71 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccccEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999998764321 238999999999999999996
Q ss_pred HHcCCCCCCCceEEE
Q 009251 366 ELNDEGNWRSGLRVR 380 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~ 380 (539)
+++..++++-|+|.
T Consensus 72 -~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 72 -QKEHRLDGRVIDPK 85 (87)
T ss_dssp -SSCEEETTEEEEEE
T ss_pred -hCCCEECCEEEEEE
Confidence 56666555555554
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=120.54 Aligned_cols=74 Identities=28% Similarity=0.271 Sum_probs=67.3
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
++|||+|||.++|+++|+++|++||.|..|+|..+ .+|||||+|++.++|++|++.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 48999999999999999999999999999999643 27899999999999999999999
Q ss_pred CCCCCCCceEEEEeee
Q 009251 369 DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~ 384 (539)
+..++++.|+|.+...
T Consensus 59 g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 59 GKVICGSRVRVELSTG 74 (101)
T ss_dssp HSCSSSCCCEEEESSS
T ss_pred CCeECCcEEEEEEccC
Confidence 9998888888888754
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.6e-14 Score=127.09 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=69.7
Q ss_pred hhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 283 LEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 283 ~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
..+...++|||+|||.++|+++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~ 93 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSG-----------------HPKGYAYIEFAERNSVDA 93 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTS-----------------SCEEEEEEEESSHHHHHH
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcccEEEEEECCHHHHHH
Confidence 344567899999999999999999999999999999998764221 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009251 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~ 383 (539)
|| .||+..+.++-|+|.+..
T Consensus 94 A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 94 AV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HH-TTTTCEETTEECEEEESS
T ss_pred HH-hcCCCeECCeEEEEEECC
Confidence 99 799988777667766643
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=125.99 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=66.5
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ ..+|||||+|++.++|++||
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai 86 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASK-----------------RSRGFGFVTFSSMAEVDAAM 86 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTS-----------------SCCSEEEEECSSHHHHHHHH
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCC-----------------CcCceEEEEeCCHHHHHHHH
Confidence 3466899999999999999999999999999999998764321 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+. ++..+.++-|+|.+..
T Consensus 87 ~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 87 AA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp TS-CSEEETTEEEEEECCS
T ss_pred Hh-CCcEECCEEEEEEECC
Confidence 86 7777666555555543
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=118.83 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=62.2
Q ss_pred ceeEEeecCCCcc------cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 288 SRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rTVyV~nLP~d~------t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
+++|||+|||.++ ++++|+++|++||.|..|+|.+ .+ + .+||||||+|++.++|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~----------g-------~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--ED----------G-------KTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BT----------T-------BCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CC----------C-------cEeEEEEEEECCHHHHH
Confidence 4799999999999 7899999999999999999852 11 1 23899999999999999
Q ss_pred HHHHHHcCCCCCCC-ceEE
Q 009251 362 KAIAELNDEGNWRS-GLRV 379 (539)
Q Consensus 362 kAv~~Ln~~~~~~~-glrV 379 (539)
+|++.||+..++++ .|+|
T Consensus 62 ~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHhcCcccCCceeEEe
Confidence 99999999987776 5654
No 100
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1e-14 Score=119.84 Aligned_cols=70 Identities=24% Similarity=0.340 Sum_probs=61.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|..+..++ ..+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTN-----------------KCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSC-----------------SCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999998764321 1388999999999999999999
Q ss_pred HcCCCCC
Q 009251 367 LNDEGNW 373 (539)
Q Consensus 367 Ln~~~~~ 373 (539)
||+..+.
T Consensus 67 l~g~~~~ 73 (85)
T 1x4e_A 67 LKASGVQ 73 (85)
T ss_dssp HHHHTCC
T ss_pred hcCCeEe
Confidence 9987643
No 101
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.52 E-value=9.3e-15 Score=121.40 Aligned_cols=79 Identities=22% Similarity=0.276 Sum_probs=67.9
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
++|||+|||.++++++|+++|++||.|..|+|.++..++ .++|||||+|++.+ |++|++.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETK-----------------KPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSC-----------------CCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCC-----------------CcceEEEEEECCHH-HHHHHHHhC
Confidence 689999999999999999999999999999997654321 13899999999999 999999999
Q ss_pred CCCCCCCceEEEEeeec
Q 009251 369 DEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 369 ~~~~~~~glrV~l~~~~ 385 (539)
+..+.++-|+|.++...
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99988888888887643
No 102
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=122.76 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=68.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCC-eeEEEEe-CCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTC-LPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~-V~~VrI~-~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+|||.++|+++|+++|++||. |..|+|+ .++.++ ..+|||||+|++.++|++|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKM-----------------KNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTT-----------------TTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCC-----------------CcCcEEEEEecCHHHHHHHH
Confidence 5689999999999999999999999998 9999986 333211 23899999999999999999
Q ss_pred HHHc--CCCCCCCceEEEEeee
Q 009251 365 AELN--DEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln--~~~~~~~glrV~l~~~ 384 (539)
+.|+ +..++++.|+|.++..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~ 91 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEP 91 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCS
T ss_pred HHhhCCCceecCCeEEEEEcCC
Confidence 9996 4777888888887653
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=125.05 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=69.6
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++++++|+++|++||.|..|+|+.+.. ..+|||||+|++.++|++|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-------------------~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-------------------GSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-------------------BCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-------------------CCceEEEEEECCHHHHHHHH
Confidence 34678999999999999999999999999999999975421 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..++++-|+|.+..
T Consensus 87 ~~l~g~~~~g~~l~V~~a~ 105 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNAT 105 (109)
T ss_dssp HHHTTCEETTEECEEEECC
T ss_pred HHcCCCEECCEEEEEEECC
Confidence 9999998887777777654
No 104
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=118.23 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=64.2
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|+++ ||||||+|++.++|++|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----------------------kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----------------------QQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 35689999999999999999999999999999999532 7899999999999999999
Q ss_pred HH-cCCCCCCCceEEEE
Q 009251 366 EL-NDEGNWRSGLRVRL 381 (539)
Q Consensus 366 ~L-n~~~~~~~glrV~l 381 (539)
.| ++..++++.|+|.+
T Consensus 67 ~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp TTTTTCEETTEECCEEE
T ss_pred HhcCCeeECCCEEEEEe
Confidence 98 87777666666654
No 105
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=1.1e-14 Score=139.91 Aligned_cols=81 Identities=22% Similarity=0.234 Sum_probs=70.0
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|++||.|..|+|+++.. .+||||||+|++.++|++||
T Consensus 100 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-------------------~~~g~~fV~f~~~~~a~~Ai 160 (213)
T 4f02_A 100 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-------------------GSKGYGFVHFETQEAAERAI 160 (213)
T ss_dssp HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-------------------EEEEEEEEEESSHHHHHHHH
T ss_pred ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-------------------CCceEEEEEeCCHHHHHHHH
Confidence 34567999999999999999999999999999999976521 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++-|+|.++..
T Consensus 161 ~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 161 EKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp HHHTTCEETTEECEEEECCC
T ss_pred HHhCCCEECCEEEEEEEcCC
Confidence 99999998877777776643
No 106
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=9.7e-15 Score=123.18 Aligned_cols=80 Identities=18% Similarity=0.147 Sum_probs=67.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|+.||.|..++++.++.+ ...+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~-----------------g~~~g~afV~f~~~~~a~~Ai~~ 76 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK-----------------GMPTGEAMVAFESRDEATAAVID 76 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS-----------------SCEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC-----------------CCeeeEEEEEECCHHHHHHHHHH
Confidence 4579999999999999999999999999987777654321 12389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..++++-|+|.+..
T Consensus 77 l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 77 LNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp TTTCEETTEECEEEESS
T ss_pred hCCCeeCCeEEEEEEcC
Confidence 99998887777777754
No 107
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.2e-13 Score=124.88 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=69.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+..++ .++|||||+|++.++|++|++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG-----------------SSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC-----------------CEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC-----------------CcceEEEEEeCCHHHHHHHHH
Confidence 357899999999999999999999999999999998653221 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.++
T Consensus 148 ~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWA 164 (166)
T ss_dssp HHTTCEETTEECEEEES
T ss_pred HhCCCccCCcEEEEEec
Confidence 99999887777777765
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=122.51 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=65.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|+.||. ..|+|++++ + + .+||||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~----------g-------~~~G~afV~F~~~~~a~~Al~- 73 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-D----------G-------RVTGEADVEFATHEDAVAAMA- 73 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-S----------S-------CEEEEEEEECSSSHHHHHHHT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-C----------C-------CEeeEEEEEECCHHHHHHHHH-
Confidence 5679999999999999999999999995 499998763 1 1 138999999999999999995
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
+|+..+..+-|+|.+..
T Consensus 74 ~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 74 KDKANMQHRYVELFLNS 90 (102)
T ss_dssp TSSCCSSSSCCEEEEEC
T ss_pred hCCCeECCcEEEEEECC
Confidence 79988888878877654
No 109
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=2.5e-14 Score=129.18 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=71.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|+.|+|+.++.++ ..+|||||+|++.++|++||+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~G~afV~F~~~~~A~~Ai~ 107 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTK-----------------ESRGFAFVRFHDKRDAEDAMD 107 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSS-----------------SCCSCCEEECSCHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------ccceEEEEEECCHHHHHHHHH
Confidence 467899999999999999999999999999999997653221 138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++.|+|.+...
T Consensus 108 ~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 108 AMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp TTTTCCSSSSCCEEEECCC
T ss_pred HcCCCEECCEEEEEEECCC
Confidence 9999999888888887653
No 110
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1e-14 Score=122.11 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=66.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|..++|+.++.++ ..+|||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g-----------------~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKG-----------------MPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTS-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCC-----------------CEeeEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999999988876543211 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.++-|+|.+.
T Consensus 77 l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGP 92 (95)
T ss_dssp HTTCEETTEECEEECC
T ss_pred hCCCeECCcEEEEEec
Confidence 9999877766666643
No 111
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.51 E-value=3.6e-14 Score=131.67 Aligned_cols=85 Identities=24% Similarity=0.329 Sum_probs=72.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.|..|+|+.+..++ ..+|||||+|.+.++|++||+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTG-----------------FSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTS-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCC-----------------cEeeEEEEEECCHHHHHHHHH
Confidence 356799999999999999999999999999999998764321 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeecCC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~~ 387 (539)
.||+..++++.|+|.++..+..
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHTTCEETTEECEEEESEECC-
T ss_pred HhCCCEECCEEEEEEEecCCCC
Confidence 9999988888888888765443
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.51 E-value=1.5e-14 Score=129.28 Aligned_cols=80 Identities=11% Similarity=0.164 Sum_probs=68.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeE--EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~--VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
...++|||+|||.++|+++|+++|++||.|.. |+|++++.++ ..||||||+|++. +|++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg-----------------~~rG~aFV~f~~~-~a~~A 82 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQ-----------------LNRGFAFIQLSTI-EAAQL 82 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSS-----------------SBCSCEEEECCHH-HHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCC-----------------CcceEEEEEECCH-HHHHH
Confidence 45689999999999999999999999999977 9998765322 2389999999999 99999
Q ss_pred HHHHcCC----CCCCCceEEEEee
Q 009251 364 IAELNDE----GNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~Ln~~----~~~~~glrV~l~~ 383 (539)
|+.||+. .+.++.|+|.++.
T Consensus 83 i~~l~g~~~~~~~~gr~l~V~~a~ 106 (131)
T 2m2b_A 83 LQILQALHPPLTIDGKTINVEFAK 106 (131)
T ss_dssp HHHHTTCCCSCCGGGCCCCCEECC
T ss_pred HHHhcCCCCCccCCCEEEEEEECC
Confidence 9999998 8777778887664
No 113
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=1.1e-13 Score=126.04 Aligned_cols=77 Identities=23% Similarity=0.234 Sum_probs=69.2
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..|+|..+ .+|||||+|++.++|++||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999999999542 2789999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..++++.|+|.+..
T Consensus 128 ~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp HHHSSSCSSSSCCEEEECC
T ss_pred HHcCCCEECCeEEEEEEcC
Confidence 9999999888888888764
No 114
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=124.60 Aligned_cols=79 Identities=13% Similarity=0.103 Sum_probs=65.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|++++.++ ..+|||||+|++.++|++||+
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~a~~ 76 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTN-----------------QSRGFGFVKFKDPNCVGTVLA 76 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSC-----------------CEEEEEEEEESSTTHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764321 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
. ++..++++-|+|.++
T Consensus 77 ~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 77 S-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp H-CSEEETTEEEBCCCS
T ss_pred h-CCCeECCEEEEEEEc
Confidence 7 877766555554443
No 115
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.51 E-value=2.3e-14 Score=115.00 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=63.5
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
+|||+|||.++++++|+++|++||.|..|+|..+..++ .++|||||+|++.++|++|++ |++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTN-----------------RHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSST-----------------TSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH-CCC
Confidence 58999999999999999999999999999987653221 138999999999999999998 999
Q ss_pred CCCCCCceEEEE
Q 009251 370 EGNWRSGLRVRL 381 (539)
Q Consensus 370 ~~~~~~glrV~l 381 (539)
..+.++.|+|..
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 2mss_A 63 HEINNKMVECKK 74 (75)
T ss_dssp CCSSSCCCEEEC
T ss_pred CEECCEEEEEEe
Confidence 888777777753
No 116
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.4e-14 Score=119.77 Aligned_cols=74 Identities=18% Similarity=0.132 Sum_probs=64.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCC-eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS-VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~-V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++|+++|+++|++||. |..+.|+ .+|||||+|++.++|++|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~~ 62 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAIE 62 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHHH
Confidence 5689999999999999999999999999 6666652 17899999999999999999
Q ss_pred HHcC-CCCCCCceEEEEeee
Q 009251 366 ELND-EGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~-~~~~~~glrV~l~~~ 384 (539)
.||+ ..++++.|+|.+...
T Consensus 63 ~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 63 TLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp HHTTTCEETTEECEEEECCC
T ss_pred HccCCeeECCEEEEEEEccC
Confidence 9999 777777777776643
No 117
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=122.25 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=65.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCC-CCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQ-TSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~-~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||.++++++|+++|+.|| |..|+|..++ .+ + ..+|||||+|++.++|++||
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~----------g-------~~~g~afV~f~~~~~a~~Ai 78 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP----------E-------RLKGFGYAEFEDLDSLLSAL 78 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTT----------C-------CCCSCEEEEECCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcC----------C-------ccCeEEEEEECCHHHHHHHH
Confidence 4678999999999999999999999999 9999997653 11 1 23889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++-|+|.+..
T Consensus 79 -~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 79 -SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -HTTTCCBTTBCCCCEECC
T ss_pred -hcCCCEECCeEEEEEecc
Confidence 899999888777777654
No 118
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.9e-14 Score=122.20 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=62.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|.. .||||||+|++.++|++|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----------------------EKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999952 178999999999999999999
Q ss_pred HcCCCCCCCceEEEE
Q 009251 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (539)
||+..+.++.|+|.+
T Consensus 83 l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 83 LANFPFQGRNLRTGW 97 (101)
T ss_dssp HTTCEETTEECCCCB
T ss_pred hCCCeECCeEEEEEe
Confidence 998876655555443
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=2.7e-14 Score=124.05 Aligned_cols=75 Identities=29% Similarity=0.373 Sum_probs=65.9
Q ss_pred hhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 284 EELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 284 ~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
.+...++|||+|||.++|+++|+++|++||.|..|+|+ +|||||+|++.++|++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~A 81 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKA 81 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999983 67999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009251 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (539)
++.||+..+.++.|+|.+..
T Consensus 82 i~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 82 IEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp HHHHTTCEETTEECEEESCS
T ss_pred HHHcCCCEECCeEEEEEEec
Confidence 99999998777666666543
No 120
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=119.98 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=62.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|+++..++ .++|||||+|++.++|++||+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTG-----------------HSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSC-----------------SEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999998764321 238999999999999999998
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
. +..+.++-|+|.+.
T Consensus 76 ~--~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 76 Q--RHMIDGRWCDCKLP 90 (103)
T ss_dssp S--CEEETTEEEEEECC
T ss_pred c--CCeeCCeEEEEEec
Confidence 4 33444444555544
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.50 E-value=2.2e-14 Score=126.18 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=65.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||+++++++|+++|++|| +|..|+|... ..+|||||+|++.++|++||+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---------------------~~rGfaFV~F~~~e~A~~Ai~ 85 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---------------------DFDGTGALEFPSEEILVEALE 85 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---------------------SSSCCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---------------------CCCCEEEEEECCHHHHHHHHH
Confidence 457999999999999999999999999 9999998421 127899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++-|+|.+..
T Consensus 86 ~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 86 RLNNIEFRGSVITVERDD 103 (111)
T ss_dssp HTTTEEETTEEEEEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999998877777776654
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=8.8e-14 Score=120.80 Aligned_cols=77 Identities=25% Similarity=0.290 Sum_probs=68.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..|+|..+.. ++|||||+|.+.++|++|++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~--------------------~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE--------------------TRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT--------------------TTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC--------------------CCcEEEEEECCHHHHHHHHHH
Confidence 467999999999999999999999999999999975421 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.+..
T Consensus 67 l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp HTTCBSSSCBCEEEECC
T ss_pred cCCCEECCeEEEEEEec
Confidence 99999888888888764
No 123
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.50 E-value=5.8e-14 Score=119.38 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=65.3
Q ss_pred ccceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||. ++++++|+++|++||.|..|+|. +|||||+|++.++|++|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~Ai 74 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 74 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3678999999998 99999999999999999999982 689999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.+..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 75 EXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp HHHTTSEETTEECEEEECC
T ss_pred HHcCCCEECCEEEEEEecC
Confidence 9999988777777777653
No 124
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=127.24 Aligned_cols=79 Identities=27% Similarity=0.368 Sum_probs=67.2
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.+++.++ ..+|||||+|++.++|++||+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 123 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETE-----------------KHRGFAFVEFELAEDAAAAID 123 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTC-----------------CCCSEEEEEESCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999997653221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEE
Q 009251 366 ELNDEGNWRSGLRVRL 381 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l 381 (539)
.||+..+.++-|+|.+
T Consensus 124 ~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 124 NMNESELFGRTIRVNL 139 (140)
T ss_dssp HSTEEEETTEEEEEEC
T ss_pred HhCCCEECCEEEEEEe
Confidence 9999887766666654
No 125
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=3.3e-14 Score=132.68 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=67.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ .++|||||+|++.++|++||+
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG-----------------KKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC-----------------CccceEEEEECCHHHHHHHHH
Confidence 345899999999999999999999999999999998764221 238999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeeecC
Q 009251 366 ELNDEGNWRSGLRVRLMLRRG 386 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~~ 386 (539)
. ++..+.++.|.|.++..+.
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp C-SCCEETTEECEEEECC---
T ss_pred h-CCcEECCEEEEEEecCChh
Confidence 5 6777777777777765443
No 126
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1e-14 Score=123.88 Aligned_cols=81 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|.. .++.+.. . ..++|||||+|++.++|++||
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~----------~-------g~~~g~afV~f~~~~~a~~A~ 75 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVR----------T-------GTNRKFGYVDFESAEDLEKAL 75 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEE----------E-------ETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCC----------C-------CCcCcEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999999887 4433321 1 123899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+ ||+..+.++.|+|.+...
T Consensus 76 ~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 76 E-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp H-GGGCCBTTBCCEEECCSC
T ss_pred h-cCCcEECCcEEEEEEcCC
Confidence 8 999998888788876543
No 127
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.1e-14 Score=120.44 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=66.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeE-EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~-VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||+++|+++|+++|+.||.|.. |+|+++. + + ..+|||||+|++.++|++||+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~-~----------g-------~~~G~afV~F~~~~~a~~A~~ 75 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF-Q----------G-------RSTGEAFVQFASQEIAEKALK 75 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCS-S----------S-------CBCSEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHHH
Confidence 5679999999999999999999999999987 8886541 1 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
. ++..+.++-|+|....
T Consensus 76 ~-~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 76 K-HKERIGHRYIEIFKSS 92 (104)
T ss_dssp T-TTCCSSSSCCEEEEEC
T ss_pred h-CcchhCCcEEEEEECC
Confidence 6 8888888777776654
No 128
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.5e-14 Score=118.24 Aligned_cols=72 Identities=25% Similarity=0.295 Sum_probs=63.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC--CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV--GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~--G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|++.++|++||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------------------------~g~afV~f~~~~~A~~A~ 68 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------------------------RDYAFVHFSNREDAVEAM 68 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------------------------SSEEEEEESSHHHHHHHH
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------------------------CCeEEEEeCCHHHHHHHH
Confidence 56899999999999999999999999 999999872 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.+..
T Consensus 69 ~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 69 KALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp HHHSSEEETTEEEEEECCC
T ss_pred HHhCCCEeCCcEEEEEECC
Confidence 9999998776666666543
No 129
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.7e-14 Score=120.99 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=66.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCe----eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V----~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
..++|||+|||.++|+++|+++|+.||.| ..+++.. ...+|||||+|++.++|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~---------------------g~~~g~afV~f~~~~~a~~ 82 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT---------------------GRMRGQAFITFPNKEIAWQ 82 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC---------------------SSSCSEEEEECSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC---------------------CccceEEEEEECCHHHHHH
Confidence 56899999999999999999999999999 4555531 1137899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeeec
Q 009251 363 AIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~~~ 385 (539)
||+.||+..+.++.|+|.+...+
T Consensus 83 Ai~~l~g~~~~g~~l~v~~a~~~ 105 (115)
T 2cpx_A 83 ALHLVNGYKLYGKILVIEFGKNK 105 (115)
T ss_dssp HHHHSTTCBCSSCBCEEEECCCC
T ss_pred HHHHhCCCEeCCcEEEEEEccCC
Confidence 99999999988888888877543
No 130
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3e-14 Score=124.33 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=68.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCe-eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSV-KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V-~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||.++|+++|+++|+.||.| ..|+|+++. + + ..||||||+|++.++|++||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~----------g-------~~~G~afV~F~~~~~a~~Al 74 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-N----------G-------QGLGQALVQFKNEDDARKSE 74 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-T----------S-------SCSSCEEEECSSHHHHHHHG
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-C----------C-------CcceEEEEEECCHHHHHHHH
Confidence 356899999999999999999999999999 899997653 1 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeeec
Q 009251 365 AELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~~ 385 (539)
+. |+..+.++-|+|.++..+
T Consensus 75 ~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 75 RL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp GG-CSEEETTEEEEEEEECHH
T ss_pred Hh-CCCccCCeEEEEEECCHH
Confidence 86 887777777777776543
No 131
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6e-14 Score=116.87 Aligned_cols=78 Identities=17% Similarity=0.136 Sum_probs=66.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.| .|..|+|+++. . + ..+|||||+|++.++|++||+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA-H----------G-------NKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT-T----------S-------CEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC-C----------C-------CCceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999 99999997651 1 1 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.+..
T Consensus 69 -~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 69 -CNREYMGGRYIEVFREK 85 (91)
T ss_dssp -SCSEEETTEEEEEEEES
T ss_pred -hCCceeCCcEEEEEECC
Confidence 99998877777777654
No 132
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=2.9e-15 Score=130.78 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeE--------EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKT--------IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESV 357 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~--------VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~ 357 (539)
...++|||+|||.++++++|+++|++||.|.. |+|..++.++ ..+|||||+|++.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g-----------------~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETG-----------------KLKGEATVSFDDP 67 (116)
Confidence 46789999999999999999999999999998 8886553211 2389999999999
Q ss_pred HHHHHHHHHHcCCCCCCCceEEEEeee
Q 009251 358 ELAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 358 E~AekAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
++|++||+.||+..+.++-|+|.+...
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATR 94 (116)
Confidence 999999999999988777777777654
No 133
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.48 E-value=2.5e-14 Score=126.03 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=67.0
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCC---eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~---V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. + ..||||||+|++.++|++|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-----------g-------~~~G~afV~F~~~~~a~~A 77 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-----------G-------RQSGEAFVELESEDDVKLA 77 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-----------S-------CEEEEEEEEBSSHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHH
Confidence 5689999999999999999999999999 89999987532 1 2389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009251 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (539)
|+ ||+..+.++-|+|.+..
T Consensus 78 l~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 78 LK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp GG-GTTEEETTEEEEEEEEC
T ss_pred Hh-cCCCeECCeEEEEEECC
Confidence 99 99988777767776654
No 134
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=1.1e-13 Score=126.24 Aligned_cols=79 Identities=16% Similarity=0.277 Sum_probs=67.4
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|.++.+ ..++|||||+|++.++|++|++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~------------------g~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD------------------GLSRGCAFVTFTTRAMAQTAIK 154 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT------------------SCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC------------------CCEEEEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999999976521 1238999999999999999999
Q ss_pred HHcCCCCCC---CceEEEEe
Q 009251 366 ELNDEGNWR---SGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~---~glrV~l~ 382 (539)
.||+..++. +.|+|.++
T Consensus 155 ~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 155 AMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHTTSCCCTTCSSCCEEEEC
T ss_pred HhcCCcccCCCCCCeEEEec
Confidence 999987664 56777764
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.47 E-value=2.7e-13 Score=123.15 Aligned_cols=79 Identities=29% Similarity=0.343 Sum_probs=67.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.++...+ .++|||||+|++.++|++|++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG-----------------RPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997653211 237899999999999999999
Q ss_pred HHcCCCCCC--CceEEEE
Q 009251 366 ELNDEGNWR--SGLRVRL 381 (539)
Q Consensus 366 ~Ln~~~~~~--~glrV~l 381 (539)
.||+..+.+ ..|+|.+
T Consensus 150 ~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp HHTTCCCTTCSSCCEEEE
T ss_pred HhcCCEecCCCeEEEEEe
Confidence 999998866 5666664
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=123.94 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=67.3
Q ss_pred cceeEEeecCCCcccHHHHH----HHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~----e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
..++|||+||+.++++++|+ ++|++||.|..|.|... + ..||||||+|++.++|++
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-------------~-------~~rG~aFV~F~~~~~A~~ 87 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-------------D-------DNSGKAYIVFATQESAQA 87 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-------------C-------SSCCCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-------------C-------CcCCEEEEEECCHHHHHH
Confidence 46799999999999998876 79999999999988421 1 128999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEeee
Q 009251 363 AIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~~ 384 (539)
||+.||+..+.++.|+|.++..
T Consensus 88 Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 88 FVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp HHHHSTTCCCTTSCCEEEECCC
T ss_pred HHHHHCCCEeCCCEEEEEEccC
Confidence 9999999999999899887653
No 137
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=5.6e-14 Score=120.88 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=66.7
Q ss_pred cceeEEeecCCCcc------cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHH
Q 009251 287 QSRIVVAENLPEDH------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 287 ~~rTVyV~nLP~d~------t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~A 360 (539)
..++|||+|||.++ |+++|+++|++||.|..|+|.+ .+ + .++|||||+|++.++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~----------g-------~~~G~afV~f~~~~~A 74 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--ED----------G-------KTKGYIFLEYASPAHA 74 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BT----------T-------BSCCEEEEEECSSSHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CC----------C-------CeeeEEEEEECCHHHH
Confidence 46899999999999 7899999999999999999852 11 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCCC-ceEEEEee
Q 009251 361 EKAIAELNDEGNWRS-GLRVRLML 383 (539)
Q Consensus 361 ekAv~~Ln~~~~~~~-glrV~l~~ 383 (539)
++||+.||+..++++ .|+|.++.
T Consensus 75 ~~Ai~~l~g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 75 VDAVKNADGYKLDKQHTFRVNLFT 98 (105)
T ss_dssp HHHHHHCSSEECSTTCEEEEECSC
T ss_pred HHHHHHhCCcccCCCceEEEEEcc
Confidence 999999999988877 77777654
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.46 E-value=9.6e-14 Score=119.95 Aligned_cols=72 Identities=24% Similarity=0.175 Sum_probs=64.8
Q ss_pred cceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.+ +++++|+++|++||.|..|+|. +|||||+|++.++|++||+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-------------------------KGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-------------------------TTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-------------------------CCEEEEEECCHHHHHHHHH
Confidence 4589999999999 9999999999999999999981 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.|++..+.++.|+|.+..
T Consensus 81 ~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAG 98 (110)
T ss_dssp HHTTCEETTEECCEEESC
T ss_pred HcCCCEECCeEEEEEECC
Confidence 999998877777777653
No 139
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.46 E-value=3.1e-14 Score=130.04 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=66.5
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||+++|+++|+++|+.|| |..|+|++++. + .+||||||+|++.++|++||
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-----------g-------~srGfaFV~F~~~e~A~~Al- 103 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-----------G-------RVTGEADVEFATHEEAVAAM- 103 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-----------S-------CSSCCCEEECSHHHHHHHHT-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-----------C-------CCceEEEEEeCCHHHHHHHH-
Confidence 3567999999999999999999999999 77999976532 1 23899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
+||+..+..+-|+|.+...
T Consensus 104 ~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 104 SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp TCCSCSSSSCCCCCEECCC
T ss_pred hhCCCEECCEEEEEEECCC
Confidence 6899888888777776554
No 140
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=3.9e-13 Score=121.54 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=66.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|..+..++ .++|||||+|++.++|++|++
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 148 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG-----------------VSRGVGFIRFDKRIEAEEAIK 148 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC-----------------CccceEEEEeCCHHHHHHHHH
Confidence 456899999999999999999999999999999997653211 138999999999999999999
Q ss_pred HHcCCCCCCCceEEE
Q 009251 366 ELNDEGNWRSGLRVR 380 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~ 380 (539)
.||+..+.++.+.|.
T Consensus 149 ~l~g~~~~g~~~~i~ 163 (167)
T 1fxl_A 149 GLNGQKPSGATEPIT 163 (167)
T ss_dssp HHTTCCCTTCSSCCE
T ss_pred HhcCCccCCCccceE
Confidence 999998877653333
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=4.3e-14 Score=113.27 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=62.5
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
||||+|||.++++++|+++|++||.|..|+|..+..++ .++|||||+|++.++|++|++ +++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~-----------------~~~g~afV~f~~~~~a~~Ai~-~~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-----------------KRRGFCFITFKEEEPVKKIME-KKY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCS-----------------SSCCCEEEECSSSHHHHHHHT-TSS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCC-----------------CcCCEEEEEECCHHHHHHHHH-hCC
Confidence 69999999999999999999999999999986653221 238899999999999999998 577
Q ss_pred CCCCCCceEEEE
Q 009251 370 EGNWRSGLRVRL 381 (539)
Q Consensus 370 ~~~~~~glrV~l 381 (539)
..+.++.++|.+
T Consensus 63 ~~~~g~~l~v~~ 74 (75)
T 1iqt_A 63 HNVGLSKCEIKV 74 (75)
T ss_dssp CCBTTBCCCEEE
T ss_pred CeECCEEEEEEE
Confidence 777777777764
No 142
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.46 E-value=1.8e-13 Score=124.96 Aligned_cols=112 Identities=19% Similarity=0.247 Sum_probs=81.6
Q ss_pred cHHHHHHhhhcCcceEEeecccccccCCCCcchhhhhccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCC
Q 009251 249 SHSHLASVLRKSSKLVVSEDGKKIKRQNPLTESDLEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGG 328 (539)
Q Consensus 249 d~e~I~~ALr~S~~LeVsedg~kVRRk~Pl~e~~~~e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~ 328 (539)
+.+.+..|| ......+.....+|++..... .....++|||+|||.++|+++|+++|++||.|..|+|..+..++
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g- 133 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG- 133 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEECCSSCC----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-
T ss_pred CHHHHHHHH-HhCCcEecCceeeecCCcccC----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC-
Confidence 455556666 333344433333343322211 12246799999999999999999999999999999997653221
Q ss_pred CCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009251 329 GASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 329 ~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
.++|||||+|++.++|++|++.||+..+.++.|+|.++
T Consensus 134 ----------------~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 134 ----------------LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ----------------SEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ----------------CcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 23899999999999999999999999887777777654
No 143
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=117.65 Aligned_cols=77 Identities=23% Similarity=0.267 Sum_probs=62.8
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|++||.| +|+.+. .+ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~-----------~g-------~~~g~afV~f~~~~~A~~A~~ 71 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQ-----------NG-------KSKGYAFIEFASFEDAKEALN 71 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCS-----------SS-------CBCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECC-----------CC-------CEeeEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999987 443321 11 238899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 72 ~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 72 SCNKREIEGRAIRLELQG 89 (101)
T ss_dssp HTSSEEETTEEEEEEECS
T ss_pred HhCCCEeCCeEEEEEEcC
Confidence 999988777667666654
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=4.9e-14 Score=128.19 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=67.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCC---eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~---V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
..++|||+|||+++|+++|+++|+.||. |+.|+|++++. + .+||||||+|++.++|++|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-----------g-------~srG~aFV~F~~~e~a~~A 104 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-----------G-------RQSGEAFVELGSEDDVKMA 104 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-----------S-------CEEEEEEEECSSHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHH
Confidence 5679999999999999999999999999 89999987642 1 2389999999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009251 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (539)
|+ ||+..+.++-|+|.+..
T Consensus 105 l~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 105 LK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp HT-TTEEESSSSEEEEEECC
T ss_pred Hh-cCCCEECCEEEEEEECC
Confidence 99 99988877777776653
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=1.1e-13 Score=113.83 Aligned_cols=70 Identities=24% Similarity=0.370 Sum_probs=62.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~----G-------~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe 355 (539)
..++|||+|||.++++++|+++|++| | .|..|+|.++ ||||||+|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----------------------kg~afV~f~ 61 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----------------------KNFAFLEFR 61 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----------------------SSEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----------------------CcEEEEEcC
Confidence 57899999999999999999999999 8 9999998532 789999999
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEE
Q 009251 356 SVELAEKAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~~~~glrV~ 380 (539)
+.++|++|+ .||+..+.++.|+|.
T Consensus 62 ~~~~a~~A~-~l~g~~~~g~~l~V~ 85 (87)
T 2hzc_A 62 SVDETTQAM-AFDGIIFQGQSLKIR 85 (87)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CHHHHHHHH-hcCCCEECCeEEEEe
Confidence 999999999 899988776666554
No 146
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=5e-14 Score=121.62 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=67.7
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCC---eeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGS---VKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~---V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. + ..+|||||+|++.++|++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-----------g-------~~~G~afV~F~~~~~a~~ 70 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-----------G-------KRRGDALIEMESEQDVQK 70 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-----------S-------TTCSEEEEEBSSHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-----------C-------CEeeEEEEEECCHHHHHH
Confidence 35689999999999999999999999998 89999976532 1 238999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009251 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~ 383 (539)
||+ |++..+.++-|+|....
T Consensus 71 Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 71 ALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp HHT-TTTCCSSSSCCCCEECC
T ss_pred HHH-hCcceeCCeEEEEEECC
Confidence 999 99988877777777654
No 147
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=114.31 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=67.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEE-EeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR-TCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~Vr-I~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++|+++|+++|+.||.|..|+ |+.++. .+.|||+|++.++|++||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---------------------~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---------------------TAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---------------------SEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---------------------CCEEEEEECCHHHHHHHHH
Confidence 467999999999999999999999999999995 654421 2349999999999999999
Q ss_pred HHcCCCCCCCceEEEEeeec
Q 009251 366 ELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~~ 385 (539)
.||+..+.++.|+|.++..+
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 99999998888888877543
No 148
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=116.09 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=63.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.|+ .|+|+.+..++ ..+|||||+|++.++|++||+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETG-----------------SSKGFGFVDFNSEEDAKAAKE 72 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSC-----------------SEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCC-----------------CcCcEEEEEECCHHHHHHHHH
Confidence 3678999999999999999999999885 45555443211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 73 ~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 73 AMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HhCCCeECCeEEEEEEec
Confidence 999998887777777764
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9.8e-14 Score=121.47 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=63.6
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|+.| .|..|+|++++. + ..+|||||+|++.++|++|| .
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-----------g-------~~~G~afV~F~~~~~a~~Al-~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-----------G-------RNNGNGLVKFLSPQDTFEAL-K 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-----------C-------CCCSEEEEECSSHHHHHHHH-H
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-----------C-------CCCeEEEEEECCHHHHHHHH-h
Confidence 35799999999999999999999999 899999976532 1 13899999999999999999 5
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..+.++-|.|..+
T Consensus 75 ~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 75 RNRMLMIQRYVEVSPA 90 (109)
T ss_dssp TTTEEETTEEEEEEEC
T ss_pred cCCCeECCeEEEEEEC
Confidence 9988876665665544
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.6e-14 Score=125.48 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=66.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||+++|+++|+++|+.||.|..+.++.+..+ + ..+|||||+|++.++|++||+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~----------g-------~~~G~afV~F~~~~~a~~Al~- 85 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN----------G-------KATGEGFVEFRNEADYKAALC- 85 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT----------S-------SEEEEEEEEBSSSHHHHHHHT-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC----------C-------CCCeEEEEEECCHHHHHHHHH-
Confidence 5689999999999999999999999999987444333211 1 238999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++-|+|.++..
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999998888888887654
No 151
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=1.2e-13 Score=116.15 Aligned_cols=77 Identities=22% Similarity=0.281 Sum_probs=66.4
Q ss_pred cceeEEeecCCCcccHHHHH----HHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~----e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
.+++|||+|||.++++++|+ ++|++||.|..|+|.. .+ ..+|||||+|++.++|++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-------------~~-------~~~g~afV~f~~~~~A~~ 66 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-------------SL-------KMRGQAFVIFKEVSSATN 66 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-------------HH-------HHTTCEEEEESSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-------------CC-------CcCcEEEEEeCCHHHHHH
Confidence 56899999999999999999 9999999999999842 11 137899999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEee
Q 009251 363 AIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~~ 383 (539)
|++.||+..++++.|+|.+..
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 67 ALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp HHHHHTTCEETTEECEEEECS
T ss_pred HHHHhCCCEECCcEEEEEEcc
Confidence 999999998877777777654
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=1.1e-13 Score=125.87 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=69.1
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+..++ .++|||||+|++.++|++|++
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG-----------------QSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS-----------------TTSEEEEEEESSHHHHHHHHH
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC-----------------ccceEEEEEECCHHHHHHHHh
Confidence 356799999999999999999999999999999997653221 238999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
|++..+.++-|+|.++..
T Consensus 148 -~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 148 -NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp -CSEECSSSSCEEEEECCC
T ss_pred -CCCEEeCCeEEEEeecCC
Confidence 888888888888887643
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=9.5e-14 Score=116.63 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=63.7
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...++|||+|||.++++++|+++|+.||.|..|.. . + ..+|||||+|++.++|++|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~--~-------------~-------~~~g~afV~f~~~~~a~~A~ 70 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ--D-------------G-------KSKGIAYIEFKSEADAEKNL 70 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEE--T-------------T-------EEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCC--C-------------C-------CcceEEEEEECCHHHHHHHH
Confidence 346789999999999999999999999998877711 0 1 13899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.|++..+.++.|+|.+..
T Consensus 71 ~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 71 EEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp HHTTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEEcC
Confidence 9999988776666666653
No 154
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.44 E-value=2e-13 Score=131.09 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=68.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+||||+|||.++|+++|+++|++||.|.+|+|+++..++ .++|||||+|++.++|++||+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg-----------------~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-----------------RSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC-----------------CccccccceeCCHHHHHHHHHH
Confidence 46799999999999999999999999999999998764322 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
|++..+.++.++|....
T Consensus 77 ~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred hhhhhcCCccccccccc
Confidence 99988777767666543
No 155
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.44 E-value=2.7e-13 Score=128.07 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=70.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|+.|+|+.+. + + ..+|||||+|++.++|++||+.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~----------g-------~~kG~afV~F~~~~~A~~Ai~~ 148 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-S----------G-------RSLGTADVHFERRADALKAMKQ 148 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-T----------S-------SCSCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-C----------C-------CEeeEEEEEeCCHHHHHHHHHH
Confidence 46899999999999999999999999999999997653 1 1 1288999999999999999999
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
||+..+.++-|+|.++..
T Consensus 149 lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 149 YKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp STTCBCSSSBCEEEEESS
T ss_pred hCCCEECCEEEEEEEecC
Confidence 999998888899988754
No 156
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.44 E-value=4.7e-13 Score=132.85 Aligned_cols=74 Identities=22% Similarity=0.271 Sum_probs=65.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|+.|+|+.++ +|||||+|++.++|++|++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----------------------~g~afV~f~~~~~A~~A~~~ 263 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----------------------HDIAFVEFDNEVQAGAARDA 263 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----------------------CcEEEEEeCCHHHHHHHHHH
Confidence 46789999999999999999999999999999996421 58999999999999999999
Q ss_pred HcCCCCC-CCceEEEEe
Q 009251 367 LNDEGNW-RSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~-~~glrV~l~ 382 (539)
||+..++ ++.|+|.+.
T Consensus 264 l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 264 LQGFKITQNNAMKISFA 280 (282)
T ss_pred cCCcEeCCCCEEEEEEe
Confidence 9998887 666777664
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=3.2e-13 Score=114.11 Aligned_cols=72 Identities=26% Similarity=0.290 Sum_probs=62.2
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|| ++|+++|+++|++||.|..|+|.. .||||||+|++.++|++||+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 68 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVAE 68 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 5679999996 899999999999999999999832 278999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|.+..
T Consensus 69 l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 69 LNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTTEEETTEEEEEECCS
T ss_pred hCCCeECCeEEEEEECC
Confidence 99988766666666543
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=5.5e-13 Score=125.17 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=63.7
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
-.+|||+||++++|+++|+++|++||+|++|+|...+ .+|||||||++.++|++|++.|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---------------------~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---------------------NQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---------------------SCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3579999999999999999999999999999985211 2689999999999999999999
Q ss_pred cCCCCCC--CceEEEEe
Q 009251 368 NDEGNWR--SGLRVRLM 382 (539)
Q Consensus 368 n~~~~~~--~glrV~l~ 382 (539)
|+..+++ +.|+|.+.
T Consensus 105 nG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFS 121 (164)
T ss_dssp TTBCSSSSCSCEEEEEC
T ss_pred CCCEecCCCcEEEEEEe
Confidence 9999876 55666654
No 159
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.5e-13 Score=116.91 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=65.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|+.||.|..|+|..+. + + ..+|||||+|++.++|++|++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-T----------G-------VSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-T----------S-------CEEEEEEEEESSCCCHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-C----------C-------CccceEEEEECCHHHHHHHHh
Confidence 467899999999999999999999999999999997653 1 1 138999999999999999998
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
++..+.++-|.|.....
T Consensus 69 --~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 69 --SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp --CCCEETTEECEEEEEEE
T ss_pred --CCCeECCEEEEEEECCc
Confidence 66555555566666554
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.41 E-value=5.5e-13 Score=124.55 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=70.0
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++++++|+++|++||.|..|+|.++..++ ..+|||||+|++.++|++|++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~-----------------~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG-----------------LSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-----------------SEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-----------------CcceEEEEEECCHHHHHHHHH
Confidence 356899999999999999999999999999999997653211 238999999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++-|+|.+...
T Consensus 175 ~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HcCCCEECCEEEEEEECCC
Confidence 9999988777777776543
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.4e-13 Score=113.04 Aligned_cols=73 Identities=26% Similarity=0.236 Sum_probs=64.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++| .|..|+|.. .+|||||+|++.++|++|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~-----------------------~~g~afV~f~~~~~a~~Ai~~ 59 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR-----------------------NKRTAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG-----------------------GGTEEEECCSCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999 999999831 288999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++-|+|.+..
T Consensus 60 l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 60 FHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp HTTEEETTEEEEEEECC
T ss_pred hCCCeECCcEEEEEEcC
Confidence 99998877777777654
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=5.1e-13 Score=120.72 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=68.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+++|||+|||.++++++|+++|+.||.|..|+|+.+..++ .++|||||+|.+.++|++|++.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~-----------------~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG-----------------QSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC-----------------cceeEEEEEECCHHHHHHHHHHc
Confidence 5799999999999999999999999999999998754221 23899999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
++..+.++.|+|.+..
T Consensus 65 ~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYAR 80 (167)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCccCCceEEEEecC
Confidence 9988877777776654
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.6e-13 Score=113.14 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=60.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..| ++ ++.+ .+ ||||+|++.++|++||+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~-------------------g~-~afV~f~~~~~a~~ai~- 63 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDK-------------------GV-FAIVEMGDVGAREAVLS- 63 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSS-------------------CC-EEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCC-------------------Cc-EEEEEECCHHHHHHHHh-
Confidence 45799999999999999999999999999998 32 2110 13 99999999999999999
Q ss_pred HcCCCCCCCceEEEEe
Q 009251 367 LNDEGNWRSGLRVRLM 382 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~ 382 (539)
||+..++++-|+|...
T Consensus 64 l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp CSCCEETTEECCCBCS
T ss_pred cCCeEECCEEEEEEEC
Confidence 9998877766666543
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.40 E-value=5.1e-13 Score=112.01 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=59.6
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
....+|||+|||+++|+++|+++|++||.|..|+|.++ +||||||+|++.++|++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~--- 63 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS--- 63 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH---
Confidence 35679999999999999999999999999999998542 28999999999999983
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
|++..+..+|.+|.+...
T Consensus 64 -~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp -HTTCEEEETTEEEEEEEC
T ss_pred -HcCCCcccCCEEEEEEEc
Confidence 566666666777766553
No 165
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.3e-13 Score=120.51 Aligned_cols=77 Identities=22% Similarity=0.295 Sum_probs=67.2
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
|+|||+|||.++|+++|+++|++||.|..|+|+.+.. + ..+|||||+|.+.++|++|++.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-----------~-------~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-----------N-------KNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-------------------CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-----------C-------CCCCEEEEEeCCHHHHHHHHHHcC
Confidence 6999999999999999999999999999999986532 1 138999999999999999999999
Q ss_pred CCCCCCCceEEEEee
Q 009251 369 DEGNWRSGLRVRLML 383 (539)
Q Consensus 369 ~~~~~~~glrV~l~~ 383 (539)
+..+.++.++|.+..
T Consensus 63 ~~~~~g~~i~v~~~~ 77 (166)
T 3md3_A 63 GKQIENNIVKINWAF 77 (166)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCccCCCeeEEEEcC
Confidence 998877777777654
No 166
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2.1e-13 Score=120.70 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=56.5
Q ss_pred cceeEEe--ecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVA--ENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV--~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++||| +||++++++++|+++|++||.|..|.|.. .||||||+|++.++|++|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4678999 66999999999999999999999998732 1789999999999999999
Q ss_pred HHHcCCCC
Q 009251 365 AELNDEGN 372 (539)
Q Consensus 365 ~~Ln~~~~ 372 (539)
+.||+..+
T Consensus 81 ~~lnG~~~ 88 (114)
T 2cq2_A 81 VTLNGKEV 88 (114)
T ss_dssp HHTTTCEE
T ss_pred HHhCCCEE
Confidence 99999865
No 167
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.40 E-value=4.6e-13 Score=129.04 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=67.5
Q ss_pred cceeEEeecCC-CcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLP-EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP-~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
+++||||+||+ +++++++|+++|++||.|.+|+|+++ .||||||+|++.++|++||+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46799999999 89999999999999999999999643 17899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.||+..+.++.|+|.+..
T Consensus 61 ~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp HHTTCEETTEECEEEECS
T ss_pred HhCCCEECCceEEEEEcc
Confidence 999999888888887754
No 168
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.39 E-value=3.5e-13 Score=121.70 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=65.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEE--------EEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTI--------RTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~V--------rI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E 358 (539)
..++|||+|||.++|+++|+++|+.||.|..+ ++.. ....+|||||+|.+.+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~--------------------~g~~~g~afV~f~~~~ 103 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--------------------EGRMKGQAFIGLPNEK 103 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE--------------------ETTTEEEEEEECSSHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc--------------------CCCcccEEEEEeCCHH
Confidence 56799999999999999999999999998763 3321 1123899999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEEeee
Q 009251 359 LAEKAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
+|++||+.||+..+.++.|+|.++..
T Consensus 104 ~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 104 AAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp HHHHHHHHHTTBEETTEECEEEECCC
T ss_pred HHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 99999999999998877787777643
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.5e-13 Score=110.48 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=59.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++++++|+++|++||.|..|+|..+ .||||||+|++.++|++|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~--- 58 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSL--- 58 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHT---
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHH---
Confidence 5689999999999999999999999999999998532 278999999999999754
Q ss_pred HcCCCCCCCceEEEEeee
Q 009251 367 LNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~ 384 (539)
++..+...|+.|.+...
T Consensus 59 -~~~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 59 -CGEDLIIKGISVHISNA 75 (88)
T ss_dssp -TTCEEEETTEEEEEECC
T ss_pred -hcCCceeCCEEEEEEec
Confidence 44444456677776554
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=5e-13 Score=116.58 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=55.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|++||.|. ++++.+..+. .....||||||+|++.++|++||+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~--------------~~g~~~G~aFV~f~~~~~a~~Ai~~ 71 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESK--------------SYFPPKGYAFLLFQEESSVQALIDA 71 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSC--------------CCSCTTSEEEECCSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCC--------------CCCCcccEEEEEECCHHHHHHHHHh
Confidence 568999999999999999999999999999 7776543210 0012389999999999999999999
Q ss_pred Hc
Q 009251 367 LN 368 (539)
Q Consensus 367 Ln 368 (539)
|+
T Consensus 72 ~~ 73 (114)
T 2dnl_A 72 CL 73 (114)
T ss_dssp SE
T ss_pred hh
Confidence 85
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=3.7e-13 Score=121.03 Aligned_cols=77 Identities=23% Similarity=0.262 Sum_probs=63.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCee--EEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVK--TIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~--~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..++|||+|||+++|+++|+++|+.| .|. .|+|++++. + ..||||||+|++.++|++||
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-----------G-------rsrGfaFV~F~~~e~A~~Al 101 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-----------G-------KITGEAFVQFASQELAEKAL 101 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-----------S-------SSCSEEEEEESSTTHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-----------C-------CCceEEEEEECCHHHHHHHH
Confidence 46799999999999999999999999 677 899876532 1 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+. ++..+.++-|+|....
T Consensus 102 ~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 102 GK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp TT-TTCCBTTBCCCCEEEC
T ss_pred HH-CCCEECCEEEEEEECC
Confidence 84 6677777777776553
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.38 E-value=1.1e-12 Score=124.21 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=67.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+++..++ ..+|||||+|++.++|++|++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 88 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM-----------------KHKGFAFVEYEVPEAAQLALE 88 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC------------------CCCSEEEEEESSHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC-----------------ccCceEEEEeCCHHHHHHHHH
Confidence 357899999999999999999999999999999997653221 138999999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.|++..+.++-|+|...
T Consensus 89 ~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 89 QMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHSSCCCC-CCCEEECC
T ss_pred HccCCeeCCeeEEEecC
Confidence 99999887777777543
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.38 E-value=1.9e-12 Score=116.14 Aligned_cols=71 Identities=25% Similarity=0.237 Sum_probs=60.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccE-EEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~-AFVEFes~E~AekAv~~L 367 (539)
..|||+||++.+|+++|+++|++||.|+.|+|.. + .|| |||||++.++|++|++.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 3578999999999999999999999999999842 0 365 999999999999999999
Q ss_pred cCCCCCCCceEEEEe
Q 009251 368 NDEGNWRSGLRVRLM 382 (539)
Q Consensus 368 n~~~~~~~glrV~l~ 382 (539)
|+..++++...+++.
T Consensus 83 nG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 83 NGADIYAGCCTLKIE 97 (124)
T ss_dssp TTCCCBTTBSEEEEE
T ss_pred CCCEecCCCeEEEEE
Confidence 999987754344443
No 174
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.37 E-value=1.2e-12 Score=116.18 Aligned_cols=74 Identities=26% Similarity=0.285 Sum_probs=65.7
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|| ++|+++|+++|++||.|..|+|.. .||||||+|++.++|++||+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-----------------------~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-----------------------PRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-----------------------TTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46789999996 799999999999999999999842 27899999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.+...
T Consensus 92 ~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp HHTTCBCSSCBCEEEECCS
T ss_pred HhCCCEECCeEEEEEEeCC
Confidence 9999998888888887653
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.37 E-value=1.3e-12 Score=118.17 Aligned_cols=73 Identities=25% Similarity=0.281 Sum_probs=61.6
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccE-EEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLH-AFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~-AFVEFes~E~AekAv~~L 367 (539)
..|||+||++.+|+++|.++|++||.|..|+|... .+|| |||||++.++|++|++.|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~L 86 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLSL 86 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHHc
Confidence 47899999999999999999999999999998521 1567 999999999999999999
Q ss_pred cCCCCCCCceEEEEee
Q 009251 368 NDEGNWRSGLRVRLML 383 (539)
Q Consensus 368 n~~~~~~~glrV~l~~ 383 (539)
|+..+......+++..
T Consensus 87 nG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 87 DGQNIYNACCTLRIDF 102 (130)
T ss_dssp TTCEEETTEEEEEEEE
T ss_pred CCCeecCCCcEEEEEe
Confidence 9999877434444443
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.37 E-value=7.5e-13 Score=120.20 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=67.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.+++|||+|||.++++++|+++|+.||.|..|+|+.+..+ + .++|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~----------~-------~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT----------G-------YSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT----------T-------EECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC----------C-------ccceEEEEEECCHHHHHHHHHh
Confidence 3579999999999999999999999999999999764321 1 2378999999999999999999
Q ss_pred HcCCCCCCCceEEEEee
Q 009251 367 LNDEGNWRSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~ 383 (539)
|++..+.++.|+|.+..
T Consensus 65 l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYAR 81 (168)
T ss_dssp HTTCEETTEECEEEECC
T ss_pred cCCCEeCCcEEEEEecC
Confidence 99988777667776654
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-13 Score=121.51 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=62.3
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCe----eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSV----KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEK 362 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V----~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Aek 362 (539)
..++|||+|||+++|+++|+++|+.||.| ..|+|+++. + + ..||||||+|++.++|++
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~----------g-------r~~G~aFV~F~~~~~A~~ 83 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-D----------G-------RPTGDAFVLFACEEYAQN 83 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-T----------S-------CEEEEEEECCSSHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-C----------C-------CEeeEEEEEECCHHHHHH
Confidence 46799999999999999999999999975 689987652 1 1 138999999999999999
Q ss_pred HHHHHcCCCCCCCceEEEEe
Q 009251 363 AIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 363 Av~~Ln~~~~~~~glrV~l~ 382 (539)
||+. |+..+..+-|.|...
T Consensus 84 Al~~-~~~~l~gR~i~V~~a 102 (123)
T 2dha_A 84 ALRK-HKDLLGKRYIELFRS 102 (123)
T ss_dssp HHTT-TTEESSSCEECCEEE
T ss_pred HHHh-CCCeeCCeEEEEEEC
Confidence 9985 777766655555443
No 178
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.37 E-value=1.7e-12 Score=118.36 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
++++|||+|||.++|+++|+++|++||.|..|+|+++...+. ..++|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~---------------~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP---------------PQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS---------------CEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC---------------CCcceEEEEEECCHHHHHHHHHH
Confidence 468999999999999999999999999999999987643110 02389999999999999999999
Q ss_pred HcCCCCC
Q 009251 367 LNDEGNW 373 (539)
Q Consensus 367 Ln~~~~~ 373 (539)
|++..+.
T Consensus 67 l~~~~~~ 73 (175)
T 3nmr_A 67 LHNMKVL 73 (175)
T ss_dssp HTTTCCC
T ss_pred hcCcEEc
Confidence 9987655
No 179
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=2e-12 Score=121.55 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=66.2
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
.++|||+|||.++++++|+++|+.|| .|..|+|+.+ .+|+|||+|++.++|++|++.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~~ 177 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALID 177 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHHH
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999999 9999999532 168999999999999999999
Q ss_pred HcCCCCC-CCceEEEEee
Q 009251 367 LNDEGNW-RSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~-~~glrV~l~~ 383 (539)
||+..+. ++.|+|.+..
T Consensus 178 l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 178 LHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp HTSSCCSSCCSCCEEEEC
T ss_pred hcCCccCCCCeEEEEeec
Confidence 9999887 7778877754
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.36 E-value=1.5e-12 Score=119.61 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=63.9
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
....++|||+|||.++|+++|+++|+.||.|..| .. + ..++|||||+|++.++|++|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~--~-----------------~~~~g~afV~f~~~~~A~~A~ 153 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ--D-----------------GKSKGIAYIEFKSEADAEKNL 153 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CS--S-----------------SSCCSEEEEECSSHHHHHHHH
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cC--C-----------------CCCceEEEEEECCHHHHHHHH
Confidence 3467899999999999999999999999988776 11 0 113889999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.++.
T Consensus 154 ~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 154 EEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp HHHTEEEETTEEEEEEECS
T ss_pred HHhCCCEECCeEEEEEecC
Confidence 9999988777667766653
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.35 E-value=1.8e-12 Score=128.55 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=68.0
Q ss_pred hccceeEEeecCCCcc---------cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec
Q 009251 285 ELQSRIVVAENLPEDH---------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~---------t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe 355 (539)
....+||||+||+.++ ++++|+++|++||+|..|+|+.. ||||||+|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----------------------kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----------------------KNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----------------------GTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----------------------CCEEEEEeC
Confidence 3467899999999998 79999999999999999999632 889999999
Q ss_pred cHHHHHHHHHHHcCCCC------------CCCceEEEEeeec
Q 009251 356 SVELAEKAIAELNDEGN------------WRSGLRVRLMLRR 385 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~------------~~~glrV~l~~~~ 385 (539)
+.++|++|++.|++..+ .++.|.|+++...
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 99999999999999998 5667888887643
No 182
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.35 E-value=1.4e-12 Score=121.66 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=66.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ .++|||||+|.+.++|++||+
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~A~~A~~ 73 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK-----------------RSRGFGFVTYATVEEVDAAMN 73 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC-----------------CccceEEEEeCCHHHHHHHHh
Confidence 467899999999999999999999999999999998764321 138999999999999999997
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
. ++..+.++.|.|....
T Consensus 74 ~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 74 A-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp T-CSCEETTEECEEEECC
T ss_pred c-CCCEECCEEeeeeccc
Confidence 5 7777666667776654
No 183
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=2.6e-12 Score=110.06 Aligned_cols=71 Identities=18% Similarity=0.296 Sum_probs=62.1
Q ss_pred cee-EEeecCCCcccHHH----HHHHhhcC-CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 288 SRI-VVAENLPEDHCHQN----LMKIFSAV-GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 288 ~rT-VyV~nLP~d~t~e~----L~e~Fs~~-G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
+.| |||.|||+++++++ |.++|+.| |+|..|. .|+|||+|++.|+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------------------------gG~AfV~F~~~esA~ 60 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------------------------GCSAILRFINQDSAE 60 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------------------------TTCEEEEESSHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------------------------cCEEEEEECCHHHHH
Confidence 345 99999999999887 55899999 5998871 379999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeeec
Q 009251 362 KAIAELNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~~~ 385 (539)
+|++.|++..+.++.|+|.++..+
T Consensus 61 ~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 61 RAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHhcCCccCCceEEEEecCCC
Confidence 999999999999999999887543
No 184
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.32 E-value=1.4e-12 Score=130.12 Aligned_cols=82 Identities=24% Similarity=0.284 Sum_probs=68.1
Q ss_pred ccceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||.+ +++++|+++|+.||.|..|+|..+... ....+|||||+|++.++|++|+
T Consensus 208 ~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~----------------tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE----------------HSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp CTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-------------------CCCEEEEEEESSHHHHHHHG
T ss_pred CCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc----------------CCCCceEEEEEeCCHHHHHHHH
Confidence 35689999999999 999999999999999999999764210 0123899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..++++-|+|.++..
T Consensus 272 -~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp -GGTTEEETTEEEEEEECCC
T ss_pred -HhcCCEECCcEEEEEEecC
Confidence 9999988777777776643
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.31 E-value=1.6e-12 Score=125.19 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=61.0
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCe--eEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSV--KTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V--~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.++|||+|||.++|+++|+++|+.||.| ..|+|..++. ..+|||||+|++.++|.+||+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~-------------------~~~g~gfV~f~~~~~A~~Ai~ 183 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS-------------------ERSSSGLLEWDSKSDALETLG 183 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS-------------------SSSEEEEEECSSHHHHHHHHH
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC-------------------CCceEEEEEeCCHHHHHHHHH
Confidence 5689999999999999999999999999 8999865420 116899999999999999999
Q ss_pred HHcCCCCCCCc
Q 009251 366 ELNDEGNWRSG 376 (539)
Q Consensus 366 ~Ln~~~~~~~g 376 (539)
.||+..+...+
T Consensus 184 ~lng~~~~g~~ 194 (205)
T 3tyt_A 184 FLNHYQMKNPN 194 (205)
T ss_dssp HHTTCEECCSS
T ss_pred HhCCCCccCCC
Confidence 99998876665
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=4.8e-12 Score=122.76 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=68.1
Q ss_pred ccceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
..+++|||+|||. ++++++|+++|++||.|..|+|++++ +|||||+|.+.++|++|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 4678999999999 99999999999999999999996531 679999999999999999
Q ss_pred HHHcCCCCCCCceEEEEee
Q 009251 365 AELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~ 383 (539)
+.||+..+.++.|+|.+..
T Consensus 90 ~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp HHHTTCBCSSSBCEEECCS
T ss_pred HHhCCCeECCeEEEEEEec
Confidence 9999999888888887654
No 187
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.30 E-value=7.4e-12 Score=108.69 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred ccceeEEeecCCC-----cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHH
Q 009251 286 LQSRIVVAENLPE-----DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 286 ~~~rTVyV~nLP~-----d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~A 360 (539)
..+++|+|+||-. +.++++|+++|++||.|..|+|+.+..+. ...+|||||+|++.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~----------------~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAP----------------DDEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCC----------------TTTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCC----------------CCCcEEEEEEECCHHHH
Confidence 3578999999962 33689999999999999999997653210 01289999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEEee
Q 009251 361 EKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 361 ekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
++|++.||+..+.++-|+|.++.
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYN 92 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHCCCEECCcEEEEEEcC
Confidence 99999999998877777777653
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=3e-12 Score=120.32 Aligned_cols=76 Identities=21% Similarity=0.316 Sum_probs=67.9
Q ss_pred cceeEEeecCCC-cccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPE-DHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~-d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
.+++|||+|||. ++++++|+++|+.||.|..|+|++++ +|||||+|.+.++|++|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----------------------~g~afV~f~~~~~a~~A~~ 59 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAMS 59 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----------------------SSCCEEECTTTHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----------------------CCEEEEEECCHHHHHHHHH
Confidence 468999999999 99999999999999999999996431 6799999999999999999
Q ss_pred HHcCCCCCCCceEEEEeee
Q 009251 366 ELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~~ 384 (539)
.||+..+.++.|+|.+...
T Consensus 60 ~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 60 HLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp HHTTCCCSSCCCEEEECCC
T ss_pred HhCCCeecCeEEEEEEecC
Confidence 9999998888888887643
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.30 E-value=4.8e-12 Score=125.66 Aligned_cols=81 Identities=30% Similarity=0.285 Sum_probs=69.2
Q ss_pred ccceeEEeecCCCcc-cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDH-CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~-t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
...++|||+|||.++ ++++|+++|+.||.|..|+|..+.+ + .++|+|||+|++.++|++|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~-----------g-------~~~g~afV~f~~~~~A~~A~ 243 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD-----------G-------QLKGFAVLEYETAEMAEEAQ 243 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS-----------C-------CEEEEEEEECSSHHHHHHHH
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC-----------C-------CcccEEEEEeCCHHHHHHHH
Confidence 467899999999995 9999999999999999999976521 1 23899999999999999999
Q ss_pred HHHcCCCCCCCceEEEEeee
Q 009251 365 AELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 365 ~~Ln~~~~~~~glrV~l~~~ 384 (539)
+.||+..+.++.|+|.+...
T Consensus 244 ~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 244 QQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHHTTCEETTEECEEEECCS
T ss_pred HHhCCCccCCeEEEEEEecC
Confidence 99999998777777777643
No 190
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.29 E-value=6.4e-12 Score=124.64 Aligned_cols=79 Identities=22% Similarity=0.271 Sum_probs=68.5
Q ss_pred ccceeEEeecCCCcccHHHHH----HHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLM----KIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~----e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
..+++|||+|||.++|+++|+ ++|+.||.|..|+|++. ++ .||||||+|++.++|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-------------~~-------~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-------------LK-------MRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-------------CC-------cceEEEEEECCHHHHH
Confidence 367899999999999999977 89999999999998642 11 2899999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009251 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
+||+.||+..++++-|+|.+...
T Consensus 67 ~A~~~l~g~~~~g~~l~v~~a~~ 89 (282)
T 3pgw_A 67 NALRSMQGFPFYDKPMRIQYAKT 89 (282)
T ss_pred HHHHHhcCCeeCCcEEEEEEecc
Confidence 99999999998888888887643
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.27 E-value=4.5e-12 Score=115.13 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=55.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
++++|||+|||.++|+++|+++|+.||.|..|+|+++..++ .++|||||+|.+.++|++|++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG-----------------RSRGFGFLSFEKPSSVDEVVKT 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS-----------------SCCSCEEEEESSTHHHHHHHHS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC-----------------CccceEEEEEccHHHHHHHHhc
Confidence 46899999999999999999999999999999997654321 2389999999999999999985
No 192
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.25 E-value=1.9e-11 Score=121.40 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=70.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..|+|+.+..++ .++|||||+|.+.++|++|++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g-----------------~~~g~afV~f~~~~~a~~A~~~ 156 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG-----------------QSKGYGFAEYMKKDSAARAKSD 156 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC-----------------CEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC-----------------ccceEEEEEECCHHHHHHHHHH
Confidence 45799999999999999999999999999999997664221 2389999999999999999999
Q ss_pred HcCCCCCCCceEEEEeeec
Q 009251 367 LNDEGNWRSGLRVRLMLRR 385 (539)
Q Consensus 367 Ln~~~~~~~glrV~l~~~~ 385 (539)
|++..+.++.|+|.+....
T Consensus 157 l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 157 LLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp HTTCEETTEECEEEECCGG
T ss_pred hCCCEeCCcEEEEEECCCC
Confidence 9999887777777776543
No 193
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.24 E-value=4.3e-12 Score=114.71 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=64.6
Q ss_pred eeEEeecC----CCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc----HHH-
Q 009251 289 RIVVAENL----PEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VEL- 359 (539)
Q Consensus 289 rTVyV~nL----P~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes----~E~- 359 (539)
..|||+|| ++++++++|+++|+.||+|..++++.|+.++. ++|||||+|.+ .++
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~-----------------slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSAL-----------------PLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCC-----------------EEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCc-----------------eeeEEEEEECCCCCCcchH
Confidence 58999999 99999999999999999999999998876543 28999999996 333
Q ss_pred ---HHHHHH--HHcCCCCCCCceEEEEe
Q 009251 360 ---AEKAIA--ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 360 ---AekAv~--~Ln~~~~~~~glrV~l~ 382 (539)
|.+||+ .||+..+.++.|+|.+.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEEC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEEC
Confidence 899988 78888877777777764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=1.5e-11 Score=121.79 Aligned_cols=74 Identities=27% Similarity=0.311 Sum_probs=66.3
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..|+|.++ +|||||+|.+.++|++|++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----------------------kg~afV~f~~~~~A~~A~~ 76 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----------------------RGFGFIRLESRTLAEIAKA 76 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----------------------TTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CcEEEEEECCHHHHHHHHH
Confidence 46789999999999999999999999999999999532 7899999999999999999
Q ss_pred HHcCCCCCCCceEEEEe
Q 009251 366 ELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~ 382 (539)
.||+..+.++.|+|.+.
T Consensus 77 ~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 77 ELDGTILKSRPLRIRFA 93 (261)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HcCCcEECCceeEeeec
Confidence 99999887777777654
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.22 E-value=2.5e-11 Score=120.13 Aligned_cols=79 Identities=20% Similarity=0.221 Sum_probs=64.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..++|||+|||.++|+++|+++|+.||.|..|+|+.+. + + ..+|||||+|++.++|.+||+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~----------g-------~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-R----------G-------RATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-T----------S-------CEEEEEEEEESSHHHHHHHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-C----------C-------CcCcEEEEEeCCHHHHHHHHHH
Confidence 35699999999999999999999999999999997652 1 1 1389999999999999999999
Q ss_pred HcCCCCC----CCceEEEEee
Q 009251 367 LNDEGNW----RSGLRVRLML 383 (539)
Q Consensus 367 Ln~~~~~----~~glrV~l~~ 383 (539)
||+..+. .+.+.|..+.
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~ 177 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPME 177 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECC
T ss_pred hcCCeEEecCCCceEEEeecc
Confidence 9654332 4556666654
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=5.4e-11 Score=103.40 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=62.2
Q ss_pred cceeEEeecCCCcc-----------cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec
Q 009251 287 QSRIVVAENLPEDH-----------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~-----------t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe 355 (539)
.+++|+|+||-... ++++|+++|++||.|..|.|. ++. .+|||||+|+
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~--------------------~~G~afV~f~ 72 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH--------------------PDGVASVSFR 72 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC--------------------TTCEEEEECS
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC--------------------CCEEEEEEEC
Confidence 57899999993322 357999999999999999773 211 2899999999
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
+.++|++|++.||+..+.++.|+|.++.
T Consensus 73 ~~~~A~~Ai~~lng~~~~gr~l~v~~a~ 100 (112)
T 2dit_A 73 DPEEADYCIQTLDGRWFGGRQITAQAWD 100 (112)
T ss_dssp CHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred CHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 9999999999999998877777777764
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.19 E-value=2.6e-11 Score=110.61 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=60.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~----G-------~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe 355 (539)
++++|||+|||.++|+++|+++|++| | .|..+++.+ .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----------------------CCCEEEEEeC
Confidence 56899999999999999999999999 6 777777642 2789999999
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEE
Q 009251 356 SVELAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~~~~glrV~l 381 (539)
+.++|++|+ .||+..+.++.++|..
T Consensus 60 ~~~~A~~A~-~~~~~~~~g~~i~v~~ 84 (172)
T 2g4b_A 60 SVDETTQAM-AFDGIIFQGQSLKIRR 84 (172)
T ss_dssp SHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CHHHHHHHH-HhCCcEecCceeeecC
Confidence 999999999 7999887766666654
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.16 E-value=6.2e-11 Score=102.78 Aligned_cols=82 Identities=21% Similarity=0.178 Sum_probs=64.7
Q ss_pred cceeEEeecC--CCcc--------cHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 287 QSRIVVAENL--PEDH--------CHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 287 ~~rTVyV~nL--P~d~--------t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
.+++|++.|+ +.+. .+++|++.|++||.|.+|+|.++.... ....+|||||+|++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~---------------~~~~~G~~fV~f~~ 68 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGV---------------EVPGCGKIFVEFTS 68 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTB---------------CCTTTTEEEEEESS
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCC---------------CcCCcEEEEEEECC
Confidence 4678899988 3333 347999999999999999997653210 01138999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
.++|++|++.||+..+.++-|+|.+..
T Consensus 69 ~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 69 VFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999999998888778877653
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.16 E-value=6.3e-11 Score=118.02 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCC-CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVG-SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G-~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
..++|||+|||.++++++|+++|+.|| .|..|+|+.+.. ...+|||||+|.+.++|++|++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~------------------~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF------------------NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC------------------CCcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 999999965421 1138899999999999999999
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
.|++..++++-|+|.+..
T Consensus 178 ~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp HHTTCEETTEECEEEECC
T ss_pred HhCCCEeCCcEEEEEECC
Confidence 999998877777777654
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.15 E-value=3.8e-11 Score=112.00 Aligned_cols=72 Identities=24% Similarity=0.347 Sum_probs=59.5
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC----C-------CeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV----G-------SVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE 355 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~----G-------~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe 355 (539)
.+|+|||+|||.++|+++|+++|+.| | .|..+++.. .+|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----------------------~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----------------------TTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----------------------CCCEEEEEeC
Confidence 46899999999999999999999999 5 566666532 2789999999
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEe
Q 009251 356 SVELAEKAIAELNDEGNWRSGLRVRLM 382 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~~~~glrV~l~ 382 (539)
+.++|++|+ .||+..+.++-|+|...
T Consensus 60 ~~~~A~~Al-~l~g~~~~g~~i~v~~~ 85 (198)
T 2yh0_A 60 SVDETTQAM-AFDGIIFQGQSLKIRRP 85 (198)
T ss_dssp CSHHHHHHG-GGTTEEETTEEEEEECC
T ss_pred CHHHHHHHH-HhcCCEEcCceEEEeCC
Confidence 999999999 79998876666666544
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.11 E-value=1.6e-11 Score=112.71 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=61.9
Q ss_pred ccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHH
Q 009251 286 LQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIA 365 (539)
Q Consensus 286 ~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~ 365 (539)
...++|||+|||.++|+++|+++|+.||.|..+.|+ +. + ....+|||||+|.+.++|++|++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~-~~----------~-------~~~~~g~afV~f~~~~~a~~A~~ 72 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV-DV----------R-------TGTNRKFGYVDFESAEDLEKALE 72 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC-EE----------E-------EETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE-EC----------C-------CCccccEEEEEECCHHHHHHHHh
Confidence 467899999999999999999999999987663221 11 1 11238999999999999999995
Q ss_pred HHcCCCCCCCceEEEEee
Q 009251 366 ELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 366 ~Ln~~~~~~~glrV~l~~ 383 (539)
||+..+.++.|+|....
T Consensus 73 -l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 73 -LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp -GGGEEETTEEEEEECCC
T ss_pred -cCCCEeCCeEEEEecCC
Confidence 99988776666665543
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.10 E-value=8.4e-11 Score=122.31 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=57.1
Q ss_pred cceeEEeec--CCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 287 QSRIVVAEN--LPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~n--LP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
.+++|||+| |+.++|+++|+++|++||+|+.|+|.. +||||||+|++.|+|++||
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~Ai 73 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 73 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 567999999 578999999999999999999988721 2789999999999999999
Q ss_pred HHHcCCCCC
Q 009251 365 AELNDEGNW 373 (539)
Q Consensus 365 ~~Ln~~~~~ 373 (539)
+.||+..+.
T Consensus 74 ~~lnG~~~~ 82 (345)
T 3tht_A 74 VTLNGKEVV 82 (345)
T ss_dssp HHTTTCEEE
T ss_pred HHhCCCccc
Confidence 999998764
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.08 E-value=1.7e-10 Score=102.30 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=65.0
Q ss_pred cceeEEeecCC--Cc---ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 287 QSRIVVAENLP--ED---HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 287 ~~rTVyV~nLP--~d---~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
.+++|+++|+- .+ -.+++|++.|++||.|.+|.|.++..... .....+||+||+|++.++|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~-------------~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS-------------TTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc-------------cCCcceEEEEEEECCHHHHH
Confidence 57899999983 22 24689999999999999999987632100 00113799999999999999
Q ss_pred HHHHHHcCCCCCCCceEEEEee
Q 009251 362 KAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~ 383 (539)
+|++.||+..+.++-|+|.+..
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 9999999998877777777653
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.1e-10 Score=96.06 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred CcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCce
Q 009251 298 EDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGL 377 (539)
Q Consensus 298 ~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~gl 377 (539)
.++++++|+++|++||.|..|+|+. ..||||||+|++.++|++||+.+++ +..+.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5689999999999999999999952 1289999999999999999998654 346678
Q ss_pred EEEEeeec
Q 009251 378 RVRLMLRR 385 (539)
Q Consensus 378 rV~l~~~~ 385 (539)
+|.++..+
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 88776543
No 205
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.06 E-value=8.7e-11 Score=101.58 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=54.6
Q ss_pred eecCCCcccHHHHHHHh------------hcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHH
Q 009251 293 AENLPEDHCHQNLMKIF------------SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELA 360 (539)
Q Consensus 293 V~nLP~d~t~e~L~e~F------------s~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~A 360 (539)
+.||+.++++++|+++| ++||.|..|+|+++.. + ..+|||||+|++.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-----------~-------~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-----------D-------HLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-----------S-------SSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-----------C-------CccEEEEEEECCHHHH
Confidence 45566666666665555 9999999999975421 1 2389999999999999
Q ss_pred HHHHHHHcCCCCCCCceEEEE
Q 009251 361 EKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 361 ekAv~~Ln~~~~~~~glrV~l 381 (539)
++|++.||+..+.++-|+|.+
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEE
T ss_pred HHHHHHHCCCEECCEEEEEEE
Confidence 999999999987777776665
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.97 E-value=1.3e-09 Score=96.22 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=61.3
Q ss_pred cceeEEeecCC--Cc--------ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 287 QSRIVVAENLP--ED--------HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 287 ~~rTVyV~nLP--~d--------~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
.+++|+++|+= .+ ..+++|++.|++||.|..|.|.++. .+|||||+|++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---------------------~~G~~fV~f~~ 64 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---------------------AQGNVYVKCPS 64 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---------------------TTCCEEEECSS
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---------------------CcEEEEEEECC
Confidence 46788888873 22 1246899999999999999995431 17899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 357 VELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 357 ~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
.++|++|++.||+..+.++.|+|.+..
T Consensus 65 ~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 65 IAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999999998888778887763
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.6e-09 Score=95.38 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=60.8
Q ss_pred cceeEEeecCCCc-ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc-HHHHHHHH
Q 009251 287 QSRIVVAENLPED-HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES-VELAEKAI 364 (539)
Q Consensus 287 ~~rTVyV~nLP~d-~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes-~E~AekAv 364 (539)
..++|||+||+.+ ++.++|+++|++||+|+.|.+..+ .-.|||+|.+ .++|++|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g-----------------------~~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----------------------AKEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT-----------------------CSEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC-----------------------CCEEEEEECCChHHHHHHH
Confidence 6789999999999 999999999999999999999654 2259999999 89999999
Q ss_pred HHHcCCCCCCC--ceEEEEee
Q 009251 365 AELNDEGNWRS--GLRVRLML 383 (539)
Q Consensus 365 ~~Ln~~~~~~~--glrV~l~~ 383 (539)
+.||+..+..+ -+++.++.
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 99975543333 35555554
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.58 E-value=9e-08 Score=81.24 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=58.4
Q ss_pred ceeEEeecCCC---c--cc---HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHH
Q 009251 288 SRIVVAENLPE---D--HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVEL 359 (539)
Q Consensus 288 ~rTVyV~nLP~---d--~t---~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~ 359 (539)
.-||+|.-++. . .. ..+|.+.|+.||+|..|||..+ .+||+|++.++
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------------------------~~fVtF~d~~s 61 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------------------------KMWVTFLEGSS 61 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------------------------SEEEEESSHHH
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------------------------CEEEEECChHH
Confidence 34777766551 1 12 3679999999999999999643 38999999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEeeecCC
Q 009251 360 AEKAIAELNDEGNWRSGLRVRLMLRRGS 387 (539)
Q Consensus 360 AekAv~~Ln~~~~~~~glrV~l~~~~~~ 387 (539)
|.+||+ ||+..+.++.|+|.+......
T Consensus 62 AlaAi~-mnG~~v~Gr~LkV~lkt~dW~ 88 (91)
T 2dnr_A 62 ALNVLS-LNGKELLNRTITIALKSPSGP 88 (91)
T ss_dssp HHHGGG-GTTCEETTEEEEEEECCCSSC
T ss_pred HHHHHh-cCCeEeCCeEEEEEeCCCCcc
Confidence 999998 999998888888888765443
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.43 E-value=4.3e-07 Score=87.31 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=57.3
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcCCCCCCCceEE
Q 009251 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELNDEGNWRSGLRV 379 (539)
Q Consensus 300 ~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~~~~~~~glrV 379 (539)
..+++|.+.|++||+|.+|.|+++...+. .....+|++||+|++.++|++|++.||+..+.++.|.+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~-------------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSS-------------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcc-------------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 35679999999999999999986543211 11123899999999999999999999999988888888
Q ss_pred EEee
Q 009251 380 RLML 383 (539)
Q Consensus 380 ~l~~ 383 (539)
.+..
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8764
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.30 E-value=4e-07 Score=77.74 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=55.5
Q ss_pred ceeEEeecCCCc------cc---HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHH
Q 009251 288 SRIVVAENLPED------HC---HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVE 358 (539)
Q Consensus 288 ~rTVyV~nLP~d------~t---~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E 358 (539)
.-||+|.-++.+ .. ..+|.+.|+.||+|..|||..+ -+||+|.+.+
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d~~ 69 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFADSH 69 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSCSH
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcChH
Confidence 458888877532 12 3579999999999999999654 2999999999
Q ss_pred HHHHHHHHHcCCCCCCCceEEEE
Q 009251 359 LAEKAIAELNDEGNWRSGLRVRL 381 (539)
Q Consensus 359 ~AekAv~~Ln~~~~~~~glrV~l 381 (539)
+|.+||+ ||+..+.++.|+|.+
T Consensus 70 sAl~AI~-ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 70 SALSVLD-VDGMKVKGRAVKISG 91 (95)
T ss_dssp HHHHHHH-GGGSEETTEEEEEEC
T ss_pred HHHHHHh-cCCeeeCCeEEEEec
Confidence 9999998 999998887777765
No 211
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00031 Score=61.54 Aligned_cols=71 Identities=11% Similarity=0.091 Sum_probs=60.9
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC-----CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~-----G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
..|||-+-|||.+++..-|+.|.+.+ |.|+.|-++-+ -+-|+|||+++..|-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhH
Confidence 36899999999999999999999999 99999988643 345999999999999
Q ss_pred HHHHHHcCCCCCCCceEEE
Q 009251 362 KAIAELNDEGNWRSGLRVR 380 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~ 380 (539)
||.-.|++.++.++.|++-
T Consensus 77 KasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 77 KMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp HHHHHHSSEEETTEEEEEE
T ss_pred HHHhhcCCeeecCeEEEec
Confidence 9999999998775555543
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.017 Score=49.91 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcC-----CCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAV-----GSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAE 361 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~-----G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~Ae 361 (539)
..++|.|+|||.++.++.|+-+|+.- |+|..|+.. .+.|+|+|.+.+.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~-------------------------~~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL-------------------------GCGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE-------------------------TTEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc-------------------------CCcEEEEEcChHHHH
Confidence 35699999999999999999999872 689998863 135999999999999
Q ss_pred HHHHH
Q 009251 362 KAIAE 366 (539)
Q Consensus 362 kAv~~ 366 (539)
+.++.
T Consensus 62 rVL~k 66 (104)
T 2dhx_A 62 RVLAQ 66 (104)
T ss_dssp HHHTC
T ss_pred HHhcC
Confidence 98773
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.25 E-value=0.0072 Score=51.80 Aligned_cols=53 Identities=23% Similarity=0.361 Sum_probs=43.7
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.+++ +||.+....||+++|+.||-| .|+.+- -..|||.|.+.+.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~Wid------------------------DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEE------------------------TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEc------------------------CCeEEEEecCHHHHHHHHHhcc
Confidence 5556 999999999999999999965 344432 2379999999999999999775
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.03 E-value=0.0084 Score=51.49 Aligned_cols=53 Identities=23% Similarity=0.358 Sum_probs=43.5
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
.+++ +||.+....||+.+|+.||-| .|+.+- -..|||.|.+.+.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid------------------------DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE------------------------TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc------------------------CCeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 455432 2379999999999999999875
No 215
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.008 Score=52.03 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred eeEEeecCCCcc-c----HHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHH
Q 009251 289 RIVVAENLPEDH-C----HQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKA 363 (539)
Q Consensus 289 rTVyV~nLP~d~-t----~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekA 363 (539)
.||+|.||+.++ . .+.++++|..|+.+.....+.- | + -..|.|.+.|+|.+|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--------------------F--R-Rirv~F~~~~~A~~A 62 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--------------------F--K-RVRINFSNPLSAADA 62 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--------------------T--T-EEEEECSSTTHHHHH
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--------------------c--e-EEEEEeCChHHHHHH
Confidence 589999998765 2 2678999999999888776521 1 1 378999999999999
Q ss_pred HHHHcCCCCCCCceEEEEee
Q 009251 364 IAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 364 v~~Ln~~~~~~~glrV~l~~ 383 (539)
-..|++..+.++.++|++..
T Consensus 63 R~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 63 RLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp HHTSTTSEETTEECEEECCC
T ss_pred HHHhccceecCceeEEEecC
Confidence 99999998888888888754
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.82 E-value=0.025 Score=50.06 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=52.8
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
..+.|.|-+||.+. ...|...|++||+|..... +. +..+..|.|++..+|++||.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~---------------------~~NWihI~Y~s~~~A~rAL~- 77 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SN---------------------TGNWMHIRYQSKLQARKALS- 77 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CS---------------------SSSEEEEEESSHHHHHHHHT-
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CC---------------------CCCeEEEEeCCHHHHHHHHH-
Confidence 45689999999885 6778899999999998876 21 14589999999999999998
Q ss_pred HcCCCCCCCceEEEE
Q 009251 367 LNDEGNWRSGLRVRL 381 (539)
Q Consensus 367 Ln~~~~~~~glrV~l 381 (539)
.|+..+. .++.|-+
T Consensus 78 kNG~ii~-g~~mIGV 91 (119)
T 1wwh_A 78 KDGRIFG-ESIMIGV 91 (119)
T ss_dssp TTTCEET-TTEECEE
T ss_pred hCCeEec-CCEEEEE
Confidence 6776643 2344433
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.71 E-value=0.031 Score=47.20 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=52.4
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln 368 (539)
..|+|++||..+|++++.+.++.+.++.....+.-+.+. +. .. -.-|||.|.+.|++....+.++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~----------~~--~~---~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSL----------YP--HM---YARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSS----------TT--CC---CEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCC----------CC--Cc---ceEEEEEeCCHHHHHHHHHHhC
Confidence 368999999999999999999999888777765322110 00 00 2349999999999999999999
Q ss_pred CCC
Q 009251 369 DEG 371 (539)
Q Consensus 369 ~~~ 371 (539)
+..
T Consensus 67 g~~ 69 (91)
T 1uw4_A 67 GYV 69 (91)
T ss_dssp TCE
T ss_pred CcE
Confidence 764
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.24 E-value=0.0081 Score=64.63 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=41.8
Q ss_pred hccceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHH
Q 009251 285 ELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAI 364 (539)
Q Consensus 285 e~~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv 364 (539)
+...|+|||. ++.+.++.+|.++|++||.|.++-+-.+ . ..||.|||.+.+++.+++
T Consensus 50 ~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------~------g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 50 EQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------F------GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------S------SEEEEEECC---CCHHHH
T ss_pred HHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------C------CeEEEEEeCCHHHHHHHH
Confidence 3356899998 7999999999999999999999987321 1 458999999999988775
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=92.88 E-value=0.14 Score=43.69 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=46.6
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
+-.|+|+.||..+|++++.+.++.+=++.....+ +. + .. .+. .. -.-|||.|.+.|+.....+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G---~-----~s-~~~--~~---~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AA---D-----LS-LYP--HL---YSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CC---C-----SS-SCC--SC---CCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CC---c-----cC-CCC--Cc---ceEEEEEeCCHHHHHHHHHHc
Confidence 3478999999999999998888775444332221 11 1 00 010 11 124999999999999999988
Q ss_pred cCCC
Q 009251 368 NDEG 371 (539)
Q Consensus 368 n~~~ 371 (539)
++..
T Consensus 74 ~g~~ 77 (97)
T 2l08_A 74 DGYI 77 (97)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 8653
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=92.66 E-value=0.057 Score=48.35 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.7
Q ss_pred ccEEEEEeccHHHHHHHHHHHcCCC
Q 009251 347 KLHAFVEYESVELAEKAIAELNDEG 371 (539)
Q Consensus 347 KG~AFVEFes~E~AekAv~~Ln~~~ 371 (539)
+|||||+|.+.++|++|++.+++..
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhcccC
Confidence 8999999999999999999988643
No 221
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=89.81 E-value=0.061 Score=47.44 Aligned_cols=7 Identities=0% Similarity=0.093 Sum_probs=3.2
Q ss_pred EEEEecc
Q 009251 350 AFVEYES 356 (539)
Q Consensus 350 AFVEFes 356 (539)
.||...+
T Consensus 66 ~~I~~pd 72 (119)
T 1b34_A 66 RYFILPD 72 (119)
T ss_dssp EEEECCT
T ss_pred EEEEecc
Confidence 4444443
No 222
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=89.23 E-value=0.15 Score=45.39 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=28.2
Q ss_pred ccEEEEEeccHHHHHHHHHHH-cCCCCCCCceEEE
Q 009251 347 KLHAFVEYESVELAEKAIAEL-NDEGNWRSGLRVR 380 (539)
Q Consensus 347 KG~AFVEFes~E~AekAv~~L-n~~~~~~~glrV~ 380 (539)
+|+++|||.+.++|++|++.| |+..+.+ .+++.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~ 46 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYD 46 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecc
Confidence 899999999999999999999 8887666 45544
No 223
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.52 E-value=0.59 Score=41.96 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=47.3
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeE-EEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKT-IRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~-VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
..|.|=++|++.+ ..+.+.|++||.|.. +.+..+.. ..... .....+. ..|.+..+..|+|++..+|.+||. .
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~-~~~~~-~~~~k~y--P~f~g~NWikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQ-AMTVG-LQDRQFV--PIFSGNSWTKITYDNPASAVDALL-E 81 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-------------CC--CCCEETTEEEEEBSSHHHHHHHHT-T
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeecccccccc-ccccc-ccccccc--CccCCCcEEEEEcCCHHHHHHHHH-h
Confidence 3677789977664 457778999999855 22211000 00000 0001111 223346789999999999999997 7
Q ss_pred cCCCCCC
Q 009251 368 NDEGNWR 374 (539)
Q Consensus 368 n~~~~~~ 374 (539)
|+..+.+
T Consensus 82 NG~ii~G 88 (132)
T 3p3d_A 82 NGAVFNG 88 (132)
T ss_dssp TTCEETT
T ss_pred CCeEeCc
Confidence 8776543
No 224
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.40 E-value=1.3 Score=48.11 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=45.3
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAEL 367 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~L 367 (539)
...++|+ |+..+...+|+++|+.||.| .|+.+. ..+|||.|.+.+.|+.+++.+
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid------------------------dt~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID------------------------DTSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS------------------------SSEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc------------------------CCeEEEEECCHHHHHHHHHHH
Confidence 3466665 99999999999999999965 444432 337999999999999999998
Q ss_pred cCC
Q 009251 368 NDE 370 (539)
Q Consensus 368 n~~ 370 (539)
+..
T Consensus 494 ~~~ 496 (507)
T 3d45_A 494 KYA 496 (507)
T ss_dssp TTC
T ss_pred HhC
Confidence 743
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=85.73 E-value=0.09 Score=44.96 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred cceeEEeecCCCcccHHH
Q 009251 287 QSRIVVAENLPEDHCHQN 304 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~ 304 (539)
...+|||+|||.++|++.
T Consensus 96 ~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 96 EFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp ------------------
T ss_pred CCCceEeCCCCCCccccc
Confidence 456899999999998864
No 226
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=82.31 E-value=0.89 Score=52.42 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=64.7
Q ss_pred CCChHHHHHHhhcceeeccCCCccccHH----HHHhhcCC--CCCceecccccch-hhHHHhhhc------------HHH
Q 009251 192 GLNDESIQKVLNQVEYYFSDLNLATTDH----LIRFILKD--PEGYVPISTVASF-KKIKAIISS------------HSH 252 (539)
Q Consensus 192 ~ls~e~~~kI~kQVEyYFSD~NL~~D~f----L~~~i~kd--~eG~Vpi~~i~sF-kKmK~Lt~d------------~e~ 252 (539)
..++|..+.|+..|+|.|+|+-|.-..= |+-.+..+ -.|.||+.+|+.+ -|+..+.+- ..+
T Consensus 102 ~~~~~~~~~~~~~~~~~f~~e~~~~~~pl~~h~~~~~~r~~~~~~~~p~~~~~~~d~k~~~~ck~~~~~~e~~p~~~~~~ 181 (950)
T 3htx_A 102 LTVDEARDEIVGRIKYIFSDEFLSAEHPLGAHLRAALRRDGERCGSVPVSVIATVDAKINSRCKIINPSVESDPFLAISY 181 (950)
T ss_dssp CCHHHHHHHHHHHHHHHTSTGGGGCSSTHHHHHHHHHTSCGGGTTEECHHHHHHTCHHHHHHHHHHCTHHHHCTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhhhhhhccCchHHHHHHHHhhcCccccccchhhheehhhhhhhhhhhcCcccccChHHHHHH
Confidence 3457889999999999999998766544 44444444 4699999999998 466655542 246
Q ss_pred HHHhhhcCcceEEeecccccccCCCCcch
Q 009251 253 LASVLRKSSKLVVSEDGKKIKRQNPLTES 281 (539)
Q Consensus 253 I~~ALr~S~~LeVsedg~kVRRk~Pl~e~ 281 (539)
|..|...+.-+.+++.. -|+|.+|.+.+
T Consensus 182 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 209 (950)
T 3htx_A 182 VMKAAAKLADYIVASPH-GLRRKNAYPSE 209 (950)
T ss_dssp HHHHHHHCCSSEEEETT-EEEESSCCCHH
T ss_pred HHHHhhcCCCcEEeCCc-ccccCCCCCHH
Confidence 66666766555677777 99999998754
No 227
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=73.82 E-value=1.4 Score=28.34 Aligned_cols=17 Identities=41% Similarity=0.763 Sum_probs=14.5
Q ss_pred cccccCCCCCCCCCCCC
Q 009251 37 FSRLNAKAPEFVPTRNP 53 (539)
Q Consensus 37 ~~~~~~~~p~~~p~~~~ 53 (539)
.|+|.+.||||+|+.=.
T Consensus 3 ~S~LS~~ApeF~Psgys 19 (26)
T 1jh4_B 3 MSKLSVNAPEFYPSGYS 19 (26)
T ss_dssp CCCSSCCCSCCCCTTCC
T ss_pred ccccCcCCceeccCccc
Confidence 58899999999998754
No 228
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=69.48 E-value=1 Score=42.18 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred CCChHHHHHHhhcceeeccCCCccccHHHHHhhcC-----CC-C--Cceecccccc
Q 009251 192 GLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILK-----DP-E--GYVPISTVAS 239 (539)
Q Consensus 192 ~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~k-----d~-e--G~Vpi~~i~s 239 (539)
.++++.++++++.. +|+...+..=.-+...+.. +. + |+|...-|..
T Consensus 30 ~l~~e~l~~l~~~t--~~s~~ei~~l~~~F~~~D~~~~~~d~~~~dG~I~~~E~~~ 83 (214)
T 2l4h_A 30 RLSKELLAEYQDLT--FLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS 83 (214)
T ss_dssp -CCHHHHHHHHSCC--SCCHHHHHHHHHHHHHHSCGGGCCHHHHTTSEECHHHHTT
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcccccccccccCCcCCHHHHHH
Confidence 36777777777663 3444433321112222222 22 4 9998887776
No 229
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=62.54 E-value=3 Score=39.46 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=34.1
Q ss_pred hcCCCCCceecccccchhhHH--HhhhcHHHHHHhhhcCcc--eEEeecccccccCC
Q 009251 224 ILKDPEGYVPISTVASFKKIK--AIISSHSHLASVLRKSSK--LVVSEDGKKIKRQN 276 (539)
Q Consensus 224 i~kd~eG~Vpi~~i~sFkKmK--~Lt~d~e~I~~ALr~S~~--LeVsedg~kVRRk~ 276 (539)
+..|++|||+|+.|+. -+.+ ....+.+.|.++++++++ .+++.+ +||-..
T Consensus 22 L~ld~~G~v~v~~LL~-~~~~~~~~~~t~~~l~~vV~~~~K~Rf~l~~~--~IRA~q 75 (186)
T 1wfx_A 22 VRLTREGWARVSEVVE-GLRKAGWSWVEEWHIVGVALHDPKGRYELRNG--EIRARY 75 (186)
T ss_dssp CCCCTTCCEEHHHHHH-HHHHTTCTTCCHHHHHHHHHHCSSCCEEEETT--EEEESS
T ss_pred CccCCCCCEEHHHHHh-hhhhcccCCCCHHHHHHHHhcCCCCceEeecc--EEEecc
Confidence 4578999999999998 3333 234467788888876654 666644 666543
No 230
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=61.49 E-value=26 Score=26.32 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=44.1
Q ss_pred cceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHH
Q 009251 287 QSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAE 366 (539)
Q Consensus 287 ~~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~ 366 (539)
...++.|.++.-..+...|++.+.+ --|..+.+-.. .+.+.|+|++.++..++|+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~-----------------------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN-----------------------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS-----------------------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 3457899999988999999999999 88998988321 34688899866666777764
Q ss_pred H
Q 009251 367 L 367 (539)
Q Consensus 367 L 367 (539)
+
T Consensus 61 ~ 61 (73)
T 3fry_A 61 A 61 (73)
T ss_dssp T
T ss_pred c
Confidence 3
No 231
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=56.76 E-value=15 Score=37.10 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred eeEEeecCCC----cccHHHHHHHhhcCCCeeEEEE
Q 009251 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (539)
Q Consensus 289 rTVyV~nLP~----d~t~e~L~e~Fs~~G~V~~VrI 320 (539)
.-|++-|+|. +++.+.|.++..++..|.-|+-
T Consensus 151 lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiKd 186 (315)
T 3na8_A 151 VPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVKE 186 (315)
T ss_dssp SCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEEE
T ss_pred CcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEEC
Confidence 4566777763 4566667776556666666654
No 232
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=54.19 E-value=4.7 Score=41.67 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=18.8
Q ss_pred eeEEeecCCCcccHHHHHHHhhc
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSA 311 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~ 311 (539)
...+|.|||+.++..-|..++..
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 46899999999998877777763
No 233
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=53.84 E-value=82 Score=28.44 Aligned_cols=49 Identities=2% Similarity=-0.019 Sum_probs=36.5
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEeccHHHHHHHHHHHcC
Q 009251 300 HCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYESVELAEKAIAELND 369 (539)
Q Consensus 300 ~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes~E~AekAv~~Ln~ 369 (539)
...+++.+.+..+-+|..+..+. +. ..-++.|.+.+.++.++.++.|..
T Consensus 98 ~~~~~v~~~l~~~peV~~~~~vt--------------G~-------~d~l~~v~~~d~~~l~~~l~~l~~ 146 (171)
T 2e1c_A 98 GKYSEVASNLAKYPEIVEVYETT--------------GD-------YDMVVKIRTKNSEELNNFLDLIGS 146 (171)
T ss_dssp TCHHHHHHHHHTSTTEEEEEECS--------------SS-------SSEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCcCeEEEEEee--------------CC-------CCEEEEEEECCHHHHHHHHHHHhc
Confidence 35678888899998988887632 11 134788999999999998876653
No 234
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*
Probab=50.79 E-value=7.3 Score=40.93 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=12.5
Q ss_pred cCCCCCCChHHHHHHhhc
Q 009251 187 DHQHGGLNDESIQKVLNQ 204 (539)
Q Consensus 187 ~~~~~~ls~e~~~kI~kQ 204 (539)
+-..-.++++...+|+++
T Consensus 36 ~E~RValtP~~V~~L~~~ 53 (394)
T 2qrj_A 36 LEARAALTPTTVKKLIAK 53 (394)
T ss_dssp TCCCCSSCHHHHHHHHHT
T ss_pred CCceeccCHHHHHHHHhC
Confidence 345567888888888654
No 235
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=49.97 E-value=72 Score=23.51 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec----cHHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE----SVELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe----s~E~AekAv 364 (539)
.++.|.|+.-..+...|++.+.+.--|..+.+-.. .+.+.|+|+ +.++..++|
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 60 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL-----------------------QNRADVVFDPNLVKEEDIKEEI 60 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 47889999888889999999999888888887432 346889996 456677777
Q ss_pred HHH
Q 009251 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 61 ~~~ 63 (74)
T 3dxs_X 61 EDA 63 (74)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 236
>1d1d_A Protein (capsid protein); two independent domains helical bundles, virus/viral protein; NMR {Rous sarcoma virus} SCOP: a.28.3.1 a.73.1.1
Probab=47.05 E-value=5.4 Score=39.68 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=20.3
Q ss_pred CCCCCCChHHHHHHhhcceee--ccCCCcc
Q 009251 188 HQHGGLNDESIQKVLNQVEYY--FSDLNLA 215 (539)
Q Consensus 188 ~~~~~ls~e~~~kI~kQVEyY--FSD~NL~ 215 (539)
..-..++..++..+++-||-| ||.+-+.
T Consensus 31 ~~h~plspr~l~~~~k~ve~~g~~sPe~i~ 60 (262)
T 1d1d_A 31 PAWTPLEPKLITRLADTVRTKGLRSPITMA 60 (262)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred CcCCCCCHHHHHHHHHHHHHcCCCChHHHH
Confidence 477899999999999999766 3554433
No 237
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=45.05 E-value=3.3 Score=34.53 Aligned_cols=21 Identities=10% Similarity=0.147 Sum_probs=18.0
Q ss_pred ecCCCcccHHHHHHHhhcCCC
Q 009251 294 ENLPEDHCHQNLMKIFSAVGS 314 (539)
Q Consensus 294 ~nLP~d~t~e~L~e~Fs~~G~ 314 (539)
++++.+.++++|+++|++||-
T Consensus 89 ~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 89 QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhHhHHHHHHHHHHhCC
Confidence 567778889999999999984
No 238
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=43.18 E-value=63 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=29.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeC
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCL 322 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~ 322 (539)
.++.|.|+.-..+...|++.+.+..-|..+.+-.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~ 37 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF 37 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 4788999988888999999999988898888843
No 239
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=43.10 E-value=5.1 Score=41.69 Aligned_cols=11 Identities=0% Similarity=0.066 Sum_probs=4.7
Q ss_pred HHHHHHhhcce
Q 009251 196 ESIQKVLNQVE 206 (539)
Q Consensus 196 e~~~kI~kQVE 206 (539)
+.+++.++.||
T Consensus 61 ~~~~~~~~~L~ 71 (371)
T 3tla_A 61 NRFFRGVEFLQ 71 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 240
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=39.60 E-value=6.2 Score=39.79 Aligned_cols=9 Identities=22% Similarity=0.338 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 009251 359 LAEKAIAEL 367 (539)
Q Consensus 359 ~AekAv~~L 367 (539)
++.+.++.+
T Consensus 203 ~~~~l~~~i 211 (314)
T 3fwy_A 203 AMNRIIAAV 211 (314)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 241
>4ec6_A Putative uncharacterized protein; GRAM-positive, conjugation, NTF2-like, unknown function; 2.50A {Enterococcus faecalis}
Probab=37.75 E-value=5.7 Score=36.59 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=18.1
Q ss_pred HHHHHHhhcceeeccCCC--ccccHHHHHhhcC
Q 009251 196 ESIQKVLNQVEYYFSDLN--LATTDHLIRFILK 226 (539)
Q Consensus 196 e~~~kI~kQVEyYFSD~N--L~~D~fL~~~i~k 226 (539)
++.--.+--|-+|||+.- -.++.+|...+.+
T Consensus 56 kvDvF~RyFLs~YfS~~~~~~~~q~~LkdFvS~ 88 (161)
T 4ec6_A 56 KIDTFGRYFLTYYFSQEKNQENYQSSLRTYVSE 88 (161)
T ss_dssp HHHHHHHHHHHHHTCCCCCHHHHHHHHGGGBCT
T ss_pred cceeeehhhhHHHhCCChhhhhHHHHHHHHhhh
Confidence 334455566778888652 2455666666543
No 242
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=35.69 E-value=18 Score=23.63 Aligned_cols=19 Identities=47% Similarity=0.844 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCccccccCC
Q 009251 513 QPPGPRMPDGTRGFAMGRG 531 (539)
Q Consensus 513 ~p~gprmpdgtrgf~~grg 531 (539)
-|||||+-.|.-||--=-|
T Consensus 4 gppgprgqpgvmgfpgppg 22 (31)
T 4gyx_A 4 GPPGPRGQPGVMGFPGPPG 22 (31)
T ss_dssp CCCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCccccCCCCCC
Confidence 4678888888888864333
No 243
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=35.53 E-value=7.8 Score=37.16 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=11.2
Q ss_pred hhccceeEEeecCCCcccHHHHHHHh
Q 009251 284 EELQSRIVVAENLPEDHCHQNLMKIF 309 (539)
Q Consensus 284 ~e~~~rTVyV~nLP~d~t~e~L~e~F 309 (539)
+++..++|-|. .-......|+++|
T Consensus 160 ~dL~gk~v~~~--~g~~~~~~l~~~~ 183 (291)
T 2yjp_A 160 AQLKDQTLLVN--KGTTADAFFTKSH 183 (291)
T ss_dssp GGGTTSEEEEE--TTSHHHHHHHHHC
T ss_pred HHhCCCEEEEe--cCCcHHHHHHHhC
Confidence 34455565543 2233444555554
No 244
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=33.42 E-value=8.9 Score=38.29 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=9.4
Q ss_pred HHHHHHcCCCCCCCceEEEEeee
Q 009251 362 KAIAELNDEGNWRSGLRVRLMLR 384 (539)
Q Consensus 362 kAv~~Ln~~~~~~~glrV~l~~~ 384 (539)
+|+..||+-... .-.++.+..+
T Consensus 309 kaL~~lN~Itkd-~~YKLnL~lk 330 (379)
T 3uau_A 309 KALAILNNITQN-DDYKLNLDLK 330 (379)
T ss_dssp HHHHHHHHHTSS-SEEEEEEEEE
T ss_pred HHHHHHhccccC-ccceeeeecc
Confidence 455555543321 1244555443
No 245
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=32.73 E-value=9.3 Score=38.50 Aligned_cols=8 Identities=38% Similarity=0.551 Sum_probs=3.4
Q ss_pred CCCeeEEE
Q 009251 312 VGSVKTIR 319 (539)
Q Consensus 312 ~G~V~~Vr 319 (539)
-|.|.+|-
T Consensus 358 ngsvasvg 365 (564)
T 4faj_A 358 NGSVASVG 365 (564)
T ss_dssp SSCEECSS
T ss_pred CCceeeee
Confidence 34444443
No 246
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=31.39 E-value=10 Score=36.38 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=11.5
Q ss_pred EEEEEeccHHHHHHHHH
Q 009251 349 HAFVEYESVELAEKAIA 365 (539)
Q Consensus 349 ~AFVEFes~E~AekAv~ 365 (539)
.-++.|.+.+++-++|.
T Consensus 186 ~~~~~~~~~~~~~~~l~ 202 (291)
T 2yjp_A 186 VKLLKFDQNTETFDALK 202 (291)
T ss_dssp SEEEEESSHHHHHHHHH
T ss_pred ceEEEeCCHHHHHHHHH
Confidence 45677777777666654
No 247
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=30.80 E-value=11 Score=38.67 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHH
Q 009251 355 ESVELAEKAIAEL 367 (539)
Q Consensus 355 es~E~AekAv~~L 367 (539)
-+.+.+-.+|..+
T Consensus 230 id~D~~Aa~lA~~ 242 (332)
T 4axs_A 230 IDKDFALAKIADA 242 (332)
T ss_dssp CCHHHHHHHHHHH
T ss_pred echHHHHHHHHHH
Confidence 4555555555544
No 248
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface, cell adhesion; 2.70A {Campylobacter jejuni subsp}
Probab=30.69 E-value=10 Score=37.78 Aligned_cols=7 Identities=0% Similarity=0.662 Sum_probs=2.9
Q ss_pred CCChHHH
Q 009251 192 GLNDESI 198 (539)
Q Consensus 192 ~ls~e~~ 198 (539)
.++++++
T Consensus 28 ~ld~~tV 34 (379)
T 3uau_A 28 SIDEKTV 34 (379)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 3444443
No 249
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=29.60 E-value=18 Score=29.16 Aligned_cols=11 Identities=9% Similarity=0.099 Sum_probs=8.8
Q ss_pred cceeEEeecCC
Q 009251 287 QSRIVVAENLP 297 (539)
Q Consensus 287 ~~rTVyV~nLP 297 (539)
...+|||+||+
T Consensus 90 ~~~~ifvg~L~ 100 (101)
T 2hvz_A 90 LLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCC
T ss_pred CCCceecCCCC
Confidence 35689999996
No 250
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.87 E-value=26 Score=31.56 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=14.3
Q ss_pred HHHHhhcCCCCCceecccccc
Q 009251 219 HLIRFILKDPEGYVPISTVAS 239 (539)
Q Consensus 219 fL~~~i~kd~eG~Vpi~~i~s 239 (539)
.|++.+..+.+|.|.+.-++.
T Consensus 50 ~l~~~~D~d~~G~I~f~EF~~ 70 (174)
T 2i7a_A 50 SLVALMELKVNGRLDQEEFAR 70 (174)
T ss_dssp HHHHHHCSSCSSEECHHHHHH
T ss_pred HHHHHHCCCCCCcCCHHHHHH
Confidence 355566678889888765544
No 251
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic, ER, golgi, transport, disulfide bond, endopla reticulum, ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A 3lcp_C
Probab=28.49 E-value=18 Score=31.45 Aligned_cols=16 Identities=6% Similarity=-0.085 Sum_probs=9.9
Q ss_pred HHhhcCCCCCceeccc
Q 009251 221 IRFILKDPEGYVPIST 236 (539)
Q Consensus 221 ~~~i~kd~eG~Vpi~~ 236 (539)
++.+-.|.+|+|...-
T Consensus 74 F~~~D~d~dG~I~~~E 89 (143)
T 3a4u_B 74 FKMHDYDGNNLLDGLE 89 (143)
T ss_dssp HHHTCTTCSSCEEHHH
T ss_pred HHHhCCCCCCccCHHH
Confidence 4445667788875443
No 252
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=28.25 E-value=1.5e+02 Score=20.44 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=38.9
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEec---cHHHHHHHHHH
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYE---SVELAEKAIAE 366 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFe---s~E~AekAv~~ 366 (539)
++.|.|+.-..+...|++.+...--|..+.+-.. .+.+.|+|+ +.++..++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE-----------------------KKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT-----------------------TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC-----------------------CCEEEEEECCCCCHHHHHHHHHH
Confidence 5667888777778899999999877888887432 345778886 34555566654
Q ss_pred H
Q 009251 367 L 367 (539)
Q Consensus 367 L 367 (539)
+
T Consensus 61 ~ 61 (66)
T 1yg0_A 61 A 61 (66)
T ss_dssp H
T ss_pred c
Confidence 4
No 253
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=28.19 E-value=15 Score=37.64 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=10.2
Q ss_pred CCCCCChHHHHHHhhc
Q 009251 189 QHGGLNDESIQKVLNQ 204 (539)
Q Consensus 189 ~~~~ls~e~~~kI~kQ 204 (539)
.....|-+++.+|++.
T Consensus 33 P~G~TS~dvv~~vr~~ 48 (327)
T 1k8w_A 33 PQGMSSNDALQKVKRI 48 (327)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3445567777777764
No 254
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=28.07 E-value=12 Score=34.86 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=5.4
Q ss_pred chhhH-HHhhhc
Q 009251 239 SFKKI-KAIISS 249 (539)
Q Consensus 239 sFkKm-K~Lt~d 249 (539)
.|.+| .+|..|
T Consensus 49 AF~~IVtSlV~d 60 (174)
T 2oar_A 49 AFTALVTKFTDS 60 (174)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 46554 344444
No 255
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein; 2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A 2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Probab=27.79 E-value=7.5 Score=32.81 Aligned_cols=61 Identities=7% Similarity=0.108 Sum_probs=30.8
Q ss_pred CcccccCcccCCCCCCChHHHHHHhhc-ceeeccCCCccccHHHHHhhcCCCCCceecccccch
Q 009251 178 GVKDKKEKKDHQHGGLNDESIQKVLNQ-VEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASF 240 (539)
Q Consensus 178 ~v~~k~~~~~~~~~~ls~e~~~kI~kQ-VEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sF 240 (539)
.+|..++..+-....++.+-+..+++. +-.+..+.... .-|++.+..|.+|.|.+.-|+.+
T Consensus 26 ~aF~~fD~~dg~~G~Is~~EL~~~l~~~lg~~~~~~~ev--~~li~~~D~d~dG~Idf~EF~~~ 87 (106)
T 2h2k_A 26 TTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSL--DEKMKSLDVNQDSELKFNEYWRL 87 (106)
T ss_dssp HHHHHHHTSSSSTTEECHHHHHHHHHHHCTTTTTTCCCH--HHHHHHHCTTCSSSEEHHHHHHH
T ss_pred HHHHHHcccCCCCCEECHHHHHHHHHHHcCcCCCCHHHH--HHHHHHHCCCCCCCCcHHHHHHH
Confidence 356555411111224555555555543 43222221111 33555677789999988776654
No 256
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=27.43 E-value=7.3 Score=43.23 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=3.6
Q ss_pred HHHHHHhhcc
Q 009251 196 ESIQKVLNQV 205 (539)
Q Consensus 196 e~~~kI~kQV 205 (539)
++...|++-|
T Consensus 48 ~l~s~~~ey~ 57 (800)
T 3oc3_A 48 ELVSQIKEYV 57 (800)
T ss_dssp SHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 257
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=27.41 E-value=13 Score=36.87 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHHcC
Q 009251 356 SVELAEKAIAELND 369 (539)
Q Consensus 356 s~E~AekAv~~Ln~ 369 (539)
+.+++.++++.|..
T Consensus 250 ~~~~~~~~~~~l~~ 263 (299)
T 3cio_A 250 TAKEVSLSMQRLEQ 263 (299)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 45666677766654
No 258
>4faj_A PRGZ; substrate binding protein, peptide binding protein, pheromon extracellular, membrane anchored; 1.90A {Enterococcus faecalis}
Probab=26.40 E-value=14 Score=37.24 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=6.2
Q ss_pred HHHHHHHhhcCC
Q 009251 302 HQNLMKIFSAVG 313 (539)
Q Consensus 302 ~e~L~e~Fs~~G 313 (539)
...|+++=..||
T Consensus 216 qkaikeygkdyg 227 (564)
T 4faj_A 216 QKAIKEYGKDYG 227 (564)
T ss_dssp HHHHHHHGGGTT
T ss_pred HHHHHHhccccC
Confidence 344555555555
No 259
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=26.39 E-value=14 Score=40.69 Aligned_cols=15 Identities=27% Similarity=0.800 Sum_probs=4.4
Q ss_pred ccccCCCCC--CCCCCC
Q 009251 38 SRLNAKAPE--FVPTRN 52 (539)
Q Consensus 38 ~~~~~~~p~--~~p~~~ 52 (539)
.|+||--|. |.|..+
T Consensus 447 ~Ri~aedp~~~f~p~~G 463 (587)
T 3jrx_A 447 ARITSENPDEGFKPSSG 463 (587)
T ss_dssp EEEEC----------CC
T ss_pred EeecccCccccCCCCCc
Confidence 477777663 665544
No 260
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=25.83 E-value=1.8e+02 Score=20.51 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=27.7
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
..++.|.++.-..+...|++.+...--|..+.+-
T Consensus 6 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 39 (71)
T 2l3m_A 6 QLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQ 39 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEE
Confidence 3468889998777888899999998778888874
No 261
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=25.58 E-value=22 Score=32.03 Aligned_cols=16 Identities=13% Similarity=0.021 Sum_probs=10.9
Q ss_pred CCCChHHHHHHhhcce
Q 009251 191 GGLNDESIQKVLNQVE 206 (539)
Q Consensus 191 ~~ls~e~~~kI~kQVE 206 (539)
-.+|+...++|++.++
T Consensus 41 ItiTe~Aa~~lk~ll~ 56 (145)
T 2d2a_A 41 LTLTPAAAIHIRELVA 56 (145)
T ss_dssp CEECHHHHHHHHHHHH
T ss_pred EEECHHHHHHHHHHHh
Confidence 4567777777776554
No 262
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=25.44 E-value=15 Score=35.95 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=23.3
Q ss_pred cEEEEEeccHHHHHHHHHHHcC-CCCCCCceEEEEee
Q 009251 348 LHAFVEYESVELAEKAIAELND-EGNWRSGLRVRLML 383 (539)
Q Consensus 348 G~AFVEFes~E~AekAv~~Ln~-~~~~~~glrV~l~~ 383 (539)
.+-.|.|.+.+.++..++.+.. ...|..++++..+.
T Consensus 210 ~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~aIG 246 (286)
T 1jr2_A 210 VPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIG 246 (286)
T ss_dssp SCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESS
T ss_pred CCCEEEEEChHHHHHHHHHHhhhccccccCCEEEEEC
Confidence 3578999999999988876643 11234455555443
No 263
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=25.21 E-value=15 Score=35.47 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=5.6
Q ss_pred CceEEEEeee
Q 009251 375 SGLRVRLMLR 384 (539)
Q Consensus 375 ~glrV~l~~~ 384 (539)
.|++|.++..
T Consensus 214 ~gi~v~~v~P 223 (285)
T 2c07_A 214 RNITVNAIAP 223 (285)
T ss_dssp GTEEEEEEEE
T ss_pred hCcEEEEEEe
Confidence 3566665544
No 264
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=24.80 E-value=22 Score=35.46 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=15.7
Q ss_pred eEEeecCCCcccHHHHHHHhh
Q 009251 290 IVVAENLPEDHCHQNLMKIFS 310 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs 310 (539)
.++|.|+|+.++..-|.++++
T Consensus 116 D~Iv~NlPy~is~pil~~lL~ 136 (295)
T 3gru_A 116 NKVVANLPYQISSPITFKLIK 136 (295)
T ss_dssp SEEEEECCGGGHHHHHHHHHH
T ss_pred cEEEEeCcccccHHHHHHHHh
Confidence 467799999888776666554
No 265
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=24.48 E-value=1.9e+02 Score=20.35 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=39.8
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc----HHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes----~E~AekAv 364 (539)
.++.|.++.-..+...|++.+...--|..+.+-.. .+.+.|+|+. .++..+++
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 61 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLA-----------------------NSNGTVEYDPLLTSPETLRGAI 61 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETT-----------------------TTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------CCEEEEEECCCcCCHHHHHHHH
Confidence 36788888777778889999988877888877432 3457888863 45556666
Q ss_pred HHH
Q 009251 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 62 ~~~ 64 (72)
T 1aw0_A 62 EDM 64 (72)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 266
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=23.91 E-value=1.6e+02 Score=29.91 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=20.1
Q ss_pred eeEEeecCC---CcccHHHHHHHhhcCCCeeEEEE
Q 009251 289 RIVVAENLP---EDHCHQNLMKIFSAVGSVKTIRT 320 (539)
Q Consensus 289 rTVyV~nLP---~d~t~e~L~e~Fs~~G~V~~VrI 320 (539)
.-|++-|+| .+++.+.|.++..++..|.-|+.
T Consensus 152 lPiilYn~P~tg~~l~~e~~~~L~a~~pnIvGiKd 186 (344)
T 2hmc_A 152 IPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKE 186 (344)
T ss_dssp SCEEEEEBGGGTBCCCHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEecCccCCCcCHHHHHHHHhcCCCEEEEEc
Confidence 457777777 23456677777446667766664
No 267
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=23.83 E-value=2.3e+02 Score=21.19 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=41.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc----HHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes----~E~AekAv 364 (539)
.++.|.++.-..+...|++.+...--|..+.+... .+.+.|+|.. .++..++|
T Consensus 11 ~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 67 (84)
T 1q8l_A 11 LKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD-----------------------NQEATIVYQPHLISVEEMKKQI 67 (84)
T ss_dssp EEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST-----------------------TTEEEEEECTTTCCHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 46788999888888999999999888988888321 3458888863 45555666
Q ss_pred HHH
Q 009251 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 68 ~~~ 70 (84)
T 1q8l_A 68 EAM 70 (84)
T ss_dssp HHT
T ss_pred HHc
Confidence 543
No 268
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=23.83 E-value=2.5e+02 Score=22.73 Aligned_cols=33 Identities=6% Similarity=0.119 Sum_probs=28.1
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.++.|.++.-..+...|++.+...--|..+.+.
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~ 42 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVT 42 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEE
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEE
Confidence 467889998888889999999998778888884
No 269
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=23.47 E-value=1.9e+02 Score=20.14 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=27.4
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.++.|.++.-..+...|++.+...--|..+.+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 37 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVN 37 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEE
Confidence 367788988777888899999998888888884
No 270
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=23.38 E-value=19 Score=36.41 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHHcCCCCCCCceEEEEee
Q 009251 356 SVELAEKAIAELNDEGNWRSGLRVRLML 383 (539)
Q Consensus 356 s~E~AekAv~~Ln~~~~~~~glrV~l~~ 383 (539)
..+..-+|+..+.... ..+++.++.
T Consensus 208 ~~~~ll~A~~~l~~~~---p~~~lvivG 232 (374)
T 2xci_A 208 EVEIILKAFKEIKKTY---SSLKLILVP 232 (374)
T ss_dssp GHHHHHHHHHHHHTTC---TTCEEEEEE
T ss_pred hHHHHHHHHHHHHhhC---CCcEEEEEC
Confidence 4667777877775432 235666654
No 271
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=22.84 E-value=2.2e+02 Score=20.63 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=41.8
Q ss_pred ceeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc----HHHHHHH
Q 009251 288 SRIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKA 363 (539)
Q Consensus 288 ~rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes----~E~AekA 363 (539)
..++.|.++.-..+...|++.+...--|..+.+-.. .+.+.|+|+. .++..++
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~ 65 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE-----------------------EKNATIIYDPKLQTPKTLQEA 65 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG-----------------------GTEEEEEECTTTCCHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc-----------------------CCEEEEEECCCCCCHHHHHHH
Confidence 447889999888888999999999877888877321 3468888864 4555666
Q ss_pred HHHH
Q 009251 364 IAEL 367 (539)
Q Consensus 364 v~~L 367 (539)
|+.+
T Consensus 66 i~~~ 69 (79)
T 1kvi_A 66 IDDM 69 (79)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 6654
No 272
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=22.82 E-value=1.9e+02 Score=19.92 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=26.8
Q ss_pred eEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
++.|.|+.-..+...|++.+.+.-.|..+.+-
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~ 34 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQ 34 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEE
Confidence 57788888888888999999998778888874
No 273
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=22.77 E-value=18 Score=37.08 Aligned_cols=10 Identities=20% Similarity=0.438 Sum_probs=5.8
Q ss_pred Hhhcceeecc
Q 009251 201 VLNQVEYYFS 210 (539)
Q Consensus 201 I~kQVEyYFS 210 (539)
|+.-++||+|
T Consensus 85 lR~~FDYfLs 94 (332)
T 2es4_D 85 VREFFDYCLT 94 (332)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4555566666
No 274
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=22.76 E-value=18 Score=34.17 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009251 143 NHNHHHHRHQ 152 (539)
Q Consensus 143 ~~~~~~~~h~ 152 (539)
|||||||+||
T Consensus 3 ~~~~~~~~~~ 12 (221)
T 2c0d_A 3 HHHHHHHHHH 12 (221)
T ss_dssp ----------
T ss_pred cccccccccc
No 275
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=22.75 E-value=18 Score=34.16 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009251 143 NHNHHHHRHQ 152 (539)
Q Consensus 143 ~~~~~~~~h~ 152 (539)
|||||||+||
T Consensus 3 ~~~~~~~~~~ 12 (236)
T 2px7_A 3 HHHHHHHHHH 12 (236)
T ss_dssp ----------
T ss_pred cccccccccc
No 276
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.73 E-value=1.3e+02 Score=24.48 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=18.3
Q ss_pred ccEEEEEeccHHHHHHHHHHHc
Q 009251 347 KLHAFVEYESVELAEKAIAELN 368 (539)
Q Consensus 347 KG~AFVEFes~E~AekAv~~Ln 368 (539)
+||.||+++..++...+|+.+.
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCT
T ss_pred CCEEEEEEecchhHHHHHHCCC
Confidence 8999999999988887776543
No 277
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=22.48 E-value=49 Score=32.96 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=9.7
Q ss_pred eEEeecCCCcccHHHHHHHhhcC
Q 009251 290 IVVAENLPEDHCHQNLMKIFSAV 312 (539)
Q Consensus 290 TVyV~nLP~d~t~e~L~e~Fs~~ 312 (539)
+|.++|+..-.|.++|.++.+.+
T Consensus 192 ~l~lEn~~~~~t~~el~~l~~~~ 214 (301)
T 2j6v_A 192 YLALENDERLWNVEEVLKAAEAL 214 (301)
T ss_dssp HEEEECCSSSCCHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHhcC
Confidence 34444444433444444444433
No 278
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=22.36 E-value=2.1e+02 Score=20.10 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=40.3
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc----HHHHHHHH
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES----VELAEKAI 364 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes----~E~AekAv 364 (539)
.++.|.++.-..+...|++.+...--|..+.+... .+.+.|+|+. .++..++|
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~-----------------------~~~~~v~~~~~~~~~~~i~~~i 61 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFE-----------------------TRQAVVTFDDAKTSVQKLTKAT 61 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETT-----------------------TTEEEEEEETTTCCHHHHHHHH
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEec-----------------------CCEEEEEECCCCCCHHHHHHHH
Confidence 36778888888888899999999888888887432 3457888863 44555666
Q ss_pred HHH
Q 009251 365 AEL 367 (539)
Q Consensus 365 ~~L 367 (539)
+.+
T Consensus 62 ~~~ 64 (72)
T 1osd_A 62 ADA 64 (72)
T ss_dssp HHT
T ss_pred Hhc
Confidence 543
No 279
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=22.34 E-value=18 Score=37.88 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009251 143 NHNHHHHRHQ 152 (539)
Q Consensus 143 ~~~~~~~~h~ 152 (539)
|||||||+||
T Consensus 499 ~~~~~~~~~~ 508 (510)
T 4grv_A 499 HHHHHHHHHH 508 (510)
T ss_dssp ----------
T ss_pred cccccccccc
No 280
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=22.06 E-value=19 Score=34.68 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009251 143 NHNHHHHRHQ 152 (539)
Q Consensus 143 ~~~~~~~~h~ 152 (539)
|||||||+||
T Consensus 3 ~~~~~~~~~~ 12 (223)
T 3dfz_A 3 HHHHHHHHHH 12 (223)
T ss_dssp ----------
T ss_pred cccccccccc
No 281
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET: GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP: c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Probab=21.99 E-value=19 Score=36.68 Aligned_cols=10 Identities=60% Similarity=1.338 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 009251 143 NHNHHHHRHQ 152 (539)
Q Consensus 143 ~~~~~~~~h~ 152 (539)
|||||||+||
T Consensus 3 ~~~~~~~~~~ 12 (315)
T 1uoz_A 3 HHHHHHHHHH 12 (315)
T ss_dssp ----------
T ss_pred cccccccccc
No 282
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.97 E-value=19 Score=35.64 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=4.7
Q ss_pred cceEEeec
Q 009251 261 SKLVVSED 268 (539)
Q Consensus 261 ~~LeVsed 268 (539)
+.|.|+-|
T Consensus 135 rVLLID~D 142 (299)
T 3cio_A 135 KVLFIDAD 142 (299)
T ss_dssp CEEEEECC
T ss_pred cEEEEECC
Confidence 45666655
No 283
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=21.51 E-value=1.9e+02 Score=22.41 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.7
Q ss_pred eeEEeecCCCcccHHHHHHHhhcCCCeeEEEEe
Q 009251 289 RIVVAENLPEDHCHQNLMKIFSAVGSVKTIRTC 321 (539)
Q Consensus 289 rTVyV~nLP~d~t~e~L~e~Fs~~G~V~~VrI~ 321 (539)
.++.|.++.-..+...|++.+...--|..+.+.
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~ 37 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVS 37 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEE
Confidence 367888988777888999999998889888884
No 284
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=21.34 E-value=1.5e+02 Score=27.56 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=33.4
Q ss_pred eeEEeecCCCc---------ccHHHHHHHh--hcCCCeeEEEEeCCCCCCCCCCCCCccccccCcccccccEEEEEecc
Q 009251 289 RIVVAENLPED---------HCHQNLMKIF--SAVGSVKTIRTCLPQTSGGGASSGSRSAKSEGMLFSNKLHAFVEYES 356 (539)
Q Consensus 289 rTVyV~nLP~d---------~t~e~L~e~F--s~~G~V~~VrI~~p~~~~~~~p~~~Rs~K~~g~~~~~KG~AFVEFes 356 (539)
-+++|-|++.+ .+-.+|++.| +.|..++ |+.++.. .+..|+|.|+|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------------------~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------------------LGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------------------SBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------------------CCCceeEEEEecC
Confidence 37788888862 3457899977 9998876 4443321 1236889999987
No 285
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=21.15 E-value=30 Score=33.56 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=11.0
Q ss_pred EEeccHHHHHHHHHHHc
Q 009251 352 VEYESVELAEKAIAELN 368 (539)
Q Consensus 352 VEFes~E~AekAv~~Ln 368 (539)
++|++.++.+.-|+.+.
T Consensus 175 ~~f~~~~~~~~~l~~i~ 191 (235)
T 1qwz_A 175 TDFENDQDYQQFLDETK 191 (235)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 35677777776666553
No 286
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=21.06 E-value=32 Score=30.10 Aligned_cols=13 Identities=8% Similarity=0.038 Sum_probs=6.4
Q ss_pred cCCCCCceecccc
Q 009251 225 LKDPEGYVPISTV 237 (539)
Q Consensus 225 ~kd~eG~Vpi~~i 237 (539)
..|.+|++...-|
T Consensus 76 D~d~dG~Ld~~EF 88 (121)
T 3fia_A 76 DMNNDGRMDQVEF 88 (121)
T ss_dssp CTTCSSEECHHHH
T ss_pred cCCCCCcCCHHHH
Confidence 3455565554433
No 287
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=20.99 E-value=1.4e+02 Score=29.51 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=19.0
Q ss_pred eeEEeecCCC----cccHHHHHHHhhcCCCeeEEEE
Q 009251 289 RIVVAENLPE----DHCHQNLMKIFSAVGSVKTIRT 320 (539)
Q Consensus 289 rTVyV~nLP~----d~t~e~L~e~Fs~~G~V~~VrI 320 (539)
.-|++-|+|. +++.+.|.++. ++..|.-|+.
T Consensus 139 lPiilYn~P~~tg~~l~~~~~~~La-~~pnIvgiK~ 173 (303)
T 2wkj_A 139 LPMVVYNIPALSGVKLTLDQINTLV-TLPGVGALXQ 173 (303)
T ss_dssp CCEEEEECHHHHCCCCCHHHHHHHH-TSTTEEEEEE
T ss_pred CCEEEEeCccccCCCCCHHHHHHHh-cCCCEEEEeC
Confidence 4566777763 45666677665 4666666654
No 288
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=20.61 E-value=21 Score=37.61 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=9.5
Q ss_pred cHHHHHHH---hhcCCCeeEEE
Q 009251 301 CHQNLMKI---FSAVGSVKTIR 319 (539)
Q Consensus 301 t~e~L~e~---Fs~~G~V~~Vr 319 (539)
+.++|+++ ..++|-+.-+.
T Consensus 255 s~~~l~~i~~la~~~~~~li~D 276 (500)
T 3tcm_A 255 AEENQYDIVKFCKNEGLVLLAD 276 (500)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 44555544 55666544443
No 289
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=20.39 E-value=21 Score=34.77 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=8.5
Q ss_pred CCcccHHHHHHHhhc
Q 009251 297 PEDHCHQNLMKIFSA 311 (539)
Q Consensus 297 P~d~t~e~L~e~Fs~ 311 (539)
|...+-+.|-+++..
T Consensus 138 p~~~~ae~L~~~l~~ 152 (286)
T 1jr2_A 138 ETCGNAEKLAEYICS 152 (286)
T ss_dssp CSCSSHHHHHHHHHT
T ss_pred CCccCHHHHHHHHHh
Confidence 445556666666654
No 290
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=20.36 E-value=41 Score=34.33 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCCCChHHHHHHhhcceeeccCCCccccHHHHHhhcCCCCCceecccccchhhHHHhhhcHHHHHHhhhc
Q 009251 190 HGGLNDESIQKVLNQVEYYFSDLNLATTDHLIRFILKDPEGYVPISTVASFKKIKAIISSHSHLASVLRK 259 (539)
Q Consensus 190 ~~~ls~e~~~kI~kQVEyYFSD~NL~~D~fL~~~i~kd~eG~Vpi~~i~sFkKmK~Lt~d~e~I~~ALr~ 259 (539)
...++.+.++.++.+.| .+||+-|+-|-++.-|+.+....+.+..-...
T Consensus 22 ~~~l~~~qve~~~~~fE---------------------~eGYLvlk~vFs~eEv~~l~~el~~~~~d~~~ 70 (344)
T 3nnf_A 22 SNAMNREQVEQLKQEYE---------------------EKGYCQIKKIFDFSAIKTIQKTLDQAKQESQI 70 (344)
T ss_dssp ---CCSHHHHHHHHHHH---------------------HHSEEEETTCSCHHHHHHHHHHHHHHHHHCCC
T ss_pred cCcCCHHHHHHHHhhhc---------------------cCceEEEcCCCCHHHHHHHHHHHHHHhhchhh
Confidence 34677777776665433 36999999999999999998887776444333
No 291
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=20.19 E-value=22 Score=36.79 Aligned_cols=8 Identities=0% Similarity=0.032 Sum_probs=3.0
Q ss_pred hHHHHHHh
Q 009251 195 DESIQKVL 202 (539)
Q Consensus 195 ~e~~~kI~ 202 (539)
..+.+-|.
T Consensus 40 ~~l~~~I~ 47 (380)
T 3c3r_A 40 KPLVKFIQ 47 (380)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 292
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=20.07 E-value=22 Score=33.84 Aligned_cols=14 Identities=43% Similarity=0.968 Sum_probs=0.0
Q ss_pred CCccccCCCCCCCC
Q 009251 135 HQQHQHHRNHNHHH 148 (539)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (539)
||||+||+||-|.|
T Consensus 3 ~~~~~~~~~~~~~~ 16 (283)
T 2yln_A 3 HHHHHHHHHHSSGH 16 (283)
T ss_dssp --------------
T ss_pred cccccccccccccc
Done!