Your job contains 1 sequence.
>009253
MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTL
TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI
RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR
NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE
GEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEED
LGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLS
ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL
SLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTL
PEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESKTIVESAISV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009253
(539 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065748 - symbol:AT2G30320 species:3702 "Arabi... 773 1.5e-138 2
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 268 8.4e-32 2
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 280 6.4e-30 2
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 208 3.3e-27 3
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 245 9.3e-26 2
UNIPROTKB|G4N3B4 - symbol:MGG_07663 "tRNA pseudouridine s... 176 8.6e-25 4
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 225 2.2e-24 2
TAIR|locus:2199726 - symbol:AT1G76120 species:3702 "Arabi... 199 3.0e-24 3
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 233 3.7e-24 2
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 233 3.7e-24 2
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 231 4.2e-24 2
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 231 6.3e-24 2
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 231 1.1e-23 2
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 226 1.6e-23 2
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 228 2.6e-23 2
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 226 3.2e-23 2
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 237 4.8e-23 2
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 226 6.1e-23 2
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 229 7.0e-23 2
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 206 8.2e-23 3
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 239 2.3e-22 2
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 245 2.7e-22 3
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 192 7.7e-22 3
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 201 1.4e-20 2
DICTYBASE|DDB_G0286567 - symbol:DDB_G0286567 species:4468... 230 4.0e-20 2
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 185 1.4e-18 2
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 155 1.1e-14 3
UNIPROTKB|F5GY32 - symbol:PUS1 "tRNA pseudouridine syntha... 165 2.1e-11 1
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 170 2.0e-10 2
FB|FBgn0034703 - symbol:CG3045 species:7227 "Drosophila m... 146 8.0e-08 2
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 130 9.5e-08 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 150 1.7e-07 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 147 1.7e-07 2
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 143 6.3e-07 2
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 89 1.7e-06 3
UNIPROTKB|F5H168 - symbol:PUS1 "tRNA pseudouridine syntha... 118 2.4e-06 1
UNIPROTKB|F8W9U5 - symbol:PUS1 "tRNA pseudouridine syntha... 118 2.4e-06 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 138 3.9e-06 2
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 121 4.3e-06 2
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 135 7.6e-06 2
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 131 8.1e-06 2
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 131 8.1e-06 2
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 128 8.6e-06 2
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 96 1.3e-05 2
UNIPROTKB|F5GXL3 - symbol:PUS1 "tRNA pseudouridine syntha... 125 1.3e-05 1
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 121 1.8e-05 2
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 130 2.6e-05 2
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 130 2.6e-05 2
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 125 4.6e-05 2
UNIPROTKB|F5H1B2 - symbol:PUS1 "tRNA pseudouridine syntha... 118 5.8e-05 1
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 101 6.3e-05 2
TIGR_CMR|ECH_0622 - symbol:ECH_0622 "tRNA pseudouridine s... 93 0.00019 2
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 81 0.00033 2
>TAIR|locus:2065748 [details] [associations]
symbol:AT2G30320 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0008033 EMBL:AC002338
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
IPI:IPI00537336 PIR:A84707 RefSeq:NP_180591.1 UniGene:At.38371
ProteinModelPortal:O22928 PaxDb:O22928 PRIDE:O22928
EnsemblPlants:AT2G30320.1 GeneID:817582 KEGG:ath:AT2G30320
TAIR:At2g30320 HOGENOM:HOG000070648 InParanoid:O22928 OMA:IRKMVGT
PhylomeDB:O22928 ProtClustDB:PLN03078 Genevestigator:O22928
GermOnline:AT2G30320 Uniprot:O22928
Length = 510
Score = 773 (277.2 bits), Expect = 1.5e-138, Sum P(2) = 1.5e-138
Identities = 150/253 (59%), Positives = 184/253 (72%)
Query: 45 PAXXXXXXXXXXXHTLTRPTPNSSD----DKWEPVRKKKVALRVGYVGTDYRGLQMQRDE 100
PA + T +P SSD DKWE RKKKV +R+GYVGTDYRGLQ+QRD+
Sbjct: 26 PALLRFSSSAAFQPSSTSLSPPSSDNFLADKWESYRKKKVVIRIGYVGTDYRGLQIQRDD 85
Query: 101 HSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDA 160
S+ TIEGELE A++KAGGIR+SNYG+L KI WARSSRTDKGVHSLAT I LKMEIP A
Sbjct: 86 PSIKTIEGELEVAIYKAGGIRDSNYGDLHKIGWARSSRTDKGVHSLATSISLKMEIPETA 145
Query: 161 WKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
WKDDP G LAK ++ HLP NI+VFS+LPS R FDPRREC LRKYSYLLP +V+GI +
Sbjct: 146 WKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFDPRRECTLRKYSYLLPVDVLGIKNSF 205
Query: 221 TAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKR-AKASKDAVFSRV 279
T+ EID HI+DFN IL EFEGE+PFHNYT+RS+YRRK + ++ +R + ++ +
Sbjct: 206 TSDEIDYHITDFNEILKEFEGEYPFHNYTQRSRYRRKSEQ--KIKQRNGRPPREPKSIKA 263
Query: 280 EESEGEEDGFSKV 292
ESE E+ ++
Sbjct: 264 SESEFREENHIEI 276
Score = 604 (217.7 bits), Expect = 1.5e-138, Sum P(2) = 1.5e-138
Identities = 116/194 (59%), Positives = 146/194 (75%)
Query: 330 NQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISIS 389
++H NS RA+WLYE DE DK+S +HFRK+F C GKLE SLGFG+VEISI
Sbjct: 290 DEHVVTPDSDNSQVYSRAKWLYEPDETDKISGAHFRKVFRCRSGKLENSLGFGFVEISIW 349
Query: 390 GESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRT 449
GESFMLHQIRKM+GTAVAVKR+LLPRDI+ LSL K +RIVLPLAPSEVL LR NSF VR
Sbjct: 350 GESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVRR 409
Query: 450 RPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPN 509
P RP M+ ESEE+ K ++EFY +V +P+VS FLD+ KSPW EW+++L++ + +
Sbjct: 410 LP--ERPGMEATGESEEVEKEIEEFYRAVMVPQVSIFLDSEKSPWKEWVDHLDRNDGLID 467
Query: 510 EQLDEVRNAWQLWK 523
E+L++VR W+ WK
Sbjct: 468 EELEDVRKGWEEWK 481
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 268 (99.4 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 74/198 (37%), Positives = 104/198 (52%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RKKKVA+ +GY GT+Y G MQ++ L T+E ELE ALF+ GGI N QK+ W R
Sbjct: 138 RKKKVAIILGYSGTNYAG--MQKNP-GLKTVEEELEHALFRTGGISPDNMYYQQKVDWIR 194
Query: 136 SSRTDKGVHSLATMICLKMEI-PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+RTDKGV ++ ++ LKME+ PPD G+ +A +N LP++I VF I+ SF
Sbjct: 195 CARTDKGVSAIRNVVSLKMEMGPPDF-----EGMKIA--LNKELPKDITVFHIMRVNNSF 247
Query: 195 DPRRECNLRKYSYLLPAEVI------------------GINSQLTAAEIDSH-ISDFNAI 235
+ + R Y Y+ P V G N+ + S +S N +
Sbjct: 248 HAKNAVDARSYIYVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKV 307
Query: 236 LNEFEGEHPFHNYTERSK 253
L+ + G H FHNYT R +
Sbjct: 308 LSFYLGNHRFHNYTSRKE 325
Score = 153 (58.9 bits), Expect = 8.4e-32, Sum P(2) = 8.4e-32
Identities = 53/177 (29%), Positives = 84/177 (47%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + S FRKI S C + G V I++ GESFMLHQIRKM+G ++ RK
Sbjct: 321 TSRKESNDVSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFMLHQIRKMIGCLISFIRKG 380
Query: 413 LPRDILTLSLA------------KHSRIVLPLAPSEVLFLRANSFSVRTRPGVT-RPEMQ 459
+ D T A +H+ + LP+AP L L F+ + + E++
Sbjct: 381 MFEDCETRDQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLDYCIFNEWNKNNSSIHGELK 440
Query: 460 TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIE-NLEKFTSIPNEQLDEV 515
+ES+++ + Y + L L++TK + WIE NL+ + +P +DE+
Sbjct: 441 --IESDQVEEFKKTIYREIAL------LESTKKEFKNWIEKNLDPYP-LPYNLMDEI 488
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 280 (103.6 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 77/215 (35%), Positives = 115/215 (53%)
Query: 75 VRKKK--VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
+ KKK VA+ GY GT Y GL Q D +IE +E LF+ G I SN G L+++
Sbjct: 84 INKKKLSVAMVFGYDGTGYYGLGYQVDI-KYPSIENLIEKVLFRCGHILPSNVGELKRLK 142
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
W+ SSRTDKGVHSLAT+I + + + +K+D +N +LP +I++FS R
Sbjct: 143 WSHSSRTDKGVHSLATVISCFLVVDDNTFKND-INQTFIDTINNYLPSSIRLFSACKVSR 201
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
SF R++ R Y+Y++P+E + N+ +ID + N IL F G + +HN+T +
Sbjct: 202 SFQARKKGIERSYNYMVPSEYL--NN----IKID----EMNKILQNFIGINSYHNFTSK- 250
Query: 253 KYRRKPHKTGRVSKR-AKASKDAVFSRVEESEGEE 286
R + + +K K KD EE E +E
Sbjct: 251 ---RNTYLSNNNNKNHEKDEKDEEDGDEEEEEDDE 282
Score = 117 (46.2 bits), Expect = 6.4e-30, Sum P(2) = 6.4e-30
Identities = 41/150 (27%), Positives = 71/150 (47%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G G+ + I GESF+L+QIR+MVG +++ + + L LSL I +P AP L+
Sbjct: 327 GKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLKSPFSICVPTAPPFPLY 386
Query: 440 LRANSFSVRTRPGVTRPEMQTMVESEEILKMVD-EFYTSVTLPEVSKFLDATKS--PWTE 496
L F+V+ P ++ + + E ++ F S +P ++ T +
Sbjct: 387 L----FNVKFDPN---SNVEKLFSNPEPIQFKQFNFLQSQLIPRFNEIEFQTNQFKEFFN 439
Query: 497 WIENLEKFTSIPNEQLDEVRNAWQLWKEKR 526
++EN F +QL + +Q KE+R
Sbjct: 440 YLENSHNFNLDDIDQLRILNQQYQTEKEER 469
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 208 (78.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 50/145 (34%), Positives = 82/145 (56%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
N ++ + R++KVA+ + G Y+G MQ++ + TIEGELE ALF AG + +++
Sbjct: 46 NVAERRAPKYRRRKVAIVFAFCGVGYQG--MQKNPGA-KTIEGELEEALFHAGAVPDADR 102
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
+ WARS+RTDKGV ++ ++ + + DP G +R+N+ LP I+VF
Sbjct: 103 NKPRNYEWARSARTDKGVSAVGQVVSGRFYV-------DPPGF--VERLNSKLPDQIRVF 153
Query: 186 SILPSQRSFDPRRECNLRKYSYLLP 210
SF ++ C+ R+Y YL+P
Sbjct: 154 GYKRVAPSFSSKKFCDRRRYVYLIP 178
Score = 145 (56.1 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 47/155 (30%), Positives = 73/155 (47%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + + G +V+ + G+SFMLHQIRKM+G AVA+ R P ++ S K
Sbjct: 350 RYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLAVAIMRNYAPESLIEASFKK 409
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEV- 483
RI +P+AP L+L F+ + E +M E +E+ +EF +
Sbjct: 410 DVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEEVSMEEYKEV---AEEFKWKYVYSHIG 466
Query: 484 -SKFLDATKSPWTEWIENLEKFTSI-PNE-QLDEV 515
++ D + W + N + + NE Q DEV
Sbjct: 467 SAEEKDGAVAIWLHSL-NQRNYPDLRSNEYQPDEV 500
Score = 69 (29.3 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 232 FNAILNEFEGEHPFHNYTERSK 253
FN IL+ + G H FHN+T R+K
Sbjct: 321 FNRILSYYVGSHNFHNFTTRTK 342
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 245 (91.3 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
Identities = 61/192 (31%), Positives = 97/192 (50%)
Query: 68 SDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN 127
+D + KKKVAL + Y G Y G+Q TIE EL TAL A I E +
Sbjct: 66 TDQEERKYPKKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEE 125
Query: 128 LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
++K+++ RS+RTDKGV ++ ++ LK+ W + ++ +++NAHLP I+V
Sbjct: 126 MKKMSFQRSARTDKGVSAVGQVVSLKV------WMIE----NILEKINAHLPPQIRVLGC 175
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIG---INSQLTAAEIDSH-ISDFNAILNEFEGEH 243
F+ + C R YSY+LP N + T+ + S + N + ++G H
Sbjct: 176 KRVTGGFNSKNNCYARTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFGLYKGTH 235
Query: 244 PFHNYTERSKYR 255
FHN+T + +R
Sbjct: 236 NFHNFTSQKGHR 247
Score = 111 (44.1 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 353 TDEADKLSASHFRKIFSCSCGK--LEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
T + S R I SCG+ + K + F I++ G+SFM+HQIRKM+G +AV +
Sbjct: 241 TSQKGHRDPSAMRYITHMSCGEPFIRKDVEFAV--ITVRGQSFMMHQIRKMIGLVIAVVK 298
Query: 411 KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
+ ++ S + ++ +P AP L L F
Sbjct: 299 GYVDEGVIEKSWGEE-KVGVPKAPGLGLVLERVHF 332
>UNIPROTKB|G4N3B4 [details] [associations]
symbol:MGG_07663 "tRNA pseudouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CM001233 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003711599.1 ProteinModelPortal:G4N3B4
EnsemblFungi:MGG_07663T0 GeneID:2683583 KEGG:mgr:MGG_07663
Uniprot:G4N3B4
Length = 720
Score = 176 (67.0 bits), Expect = 8.6e-25, Sum P(4) = 8.6e-25
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ H TIEG+L A AG I ++N + +K++ R
Sbjct: 111 KKKVAVLIGYAGTGYKGMQIN---HFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRC 167
Query: 137 SRTDKGVHSLATMICLKMEIP 157
+RTDKGVH+ + +I LK+ +P
Sbjct: 168 ARTDKGVHAASNVISLKLIVP 188
Score = 108 (43.1 bits), Expect = 8.6e-25, Sum P(4) = 8.6e-25
Identities = 27/63 (42%), Positives = 36/63 (57%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMV AV R +P D +T S + RI +P AP L L
Sbjct: 554 WVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSY-EAKRISIPKAPGLGLLLER 612
Query: 443 NSF 445
F
Sbjct: 613 PVF 615
Score = 103 (41.3 bits), Expect = 8.6e-25, Sum P(4) = 8.6e-25
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
DL R+N+HLP I+V+ IL + SF + C+ R Y YL+P +
Sbjct: 289 DLVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 334
Score = 60 (26.2 bits), Expect = 8.6e-25, Sum P(4) = 8.6e-25
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 229 ISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESE 283
I A L+++ G H FHNYT K+ K R K K + + + ++ E+E
Sbjct: 503 IGKLQAALDKYVGTHNFHNYTILKKFTDSSAK--RHIKSFKVNPEPI--QIGETE 553
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 225 (84.3 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 50/179 (27%), Positives = 94/179 (52%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 59 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRC 118
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ + D + +++N HLP +I++ + F+
Sbjct: 119 ARTDKGVSAAGQIVSLKVRLIDD----------ILEKINNHLPSHIRILGLKRVTGGFNS 168
Query: 197 RRECNLRKYSYLLPAEVIGINS---QLTAAEIDSH-ISDFNAILNEFEGEHPFHNYTER 251
+ +C+ R Y+Y+LP Q A + + N++L ++G H FHN+T +
Sbjct: 169 KNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFTSQ 227
Score = 121 (47.7 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 34/119 (28%), Positives = 57/119 (47%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I CG+ G + I + G+SFM+HQIRKM+G +A+ + P I+ S +
Sbjct: 237 RYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIERSWGE 296
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR----PGVTRPEMQTMVESEEILKMVDEF-YTSV 478
++ +P AP L L F R G+ P ++ E E+I +++ Y ++
Sbjct: 297 E-KVDVPKAPGLGLVLERVHFEKYNRRFGNDGLHEP-LEWKEEEEKIAVFKEQYIYPTI 353
Score = 39 (18.8 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 312 EKANQNSMVSGVHQEDCCNQHAN 334
E N+NS S V D CN ++
Sbjct: 383 EANNKNSKNSDVEGSDGCNDDSD 405
>TAIR|locus:2199726 [details] [associations]
symbol:AT1G76120 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684 GO:GO:0003723
GO:GO:0008033 EMBL:AC009978 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000030790
EMBL:AY086381 EMBL:AY123978 EMBL:BT000606 IPI:IPI00531649
RefSeq:NP_565126.1 UniGene:At.34703 ProteinModelPortal:Q9SGS1
EnsemblPlants:AT1G76120.1 GeneID:843944 KEGG:ath:AT1G76120
TAIR:At1g76120 InParanoid:Q9SGS1 OMA:HIGATER PhylomeDB:Q9SGS1
ProtClustDB:CLSN2689226 Genevestigator:Q9SGS1 Uniprot:Q9SGS1
Length = 463
Score = 199 (75.1 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 50/133 (37%), Positives = 76/133 (57%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+ + G Y+G MQ++ + TIEGELE ALF AG + ES G + +ARS+
Sbjct: 22 QKVAIIFAFCGVGYQG--MQKNPGA-KTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV ++ ++ + + DP G R+N++LP I++F SF +
Sbjct: 79 RTDKGVSAVGQVVSGRFIV-------DPLGF--VNRLNSNLPNQIRIFGYKHVTPSFSSK 129
Query: 198 RECNLRKYSYLLP 210
+ C+ R+Y YLLP
Sbjct: 130 KFCDRRRYVYLLP 142
Score = 135 (52.6 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 39/131 (29%), Positives = 64/131 (48%)
Query: 355 EADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP 414
+AD +A+ R+I S + + G +++ + G+SFMLHQIRKM+G AVA+ R
Sbjct: 289 KADDPTAN--RQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCAS 346
Query: 415 RDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPE---MQTMVESEEILKMV 471
++ + +K I +P+AP L+L F+ R E M+ E E K+
Sbjct: 347 ESLIQSAFSKDVNITVPMAPEVGLYLDECFFTSYNRNFEDSHEEVSMEAYKEEAEAFKL- 405
Query: 472 DEFYTSVTLPE 482
Y+ + E
Sbjct: 406 KHIYSHIGATE 416
Score = 56 (24.8 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 232 FNAILNEFEGEHPFHNYTERSK 253
F+ IL+ + G + FHN+T R+K
Sbjct: 268 FSRILSCYVGSYNFHNFTTRTK 289
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 233 (87.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 58/193 (30%), Positives = 101/193 (52%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSH-ISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + + + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNF 241
Query: 246 HNYTERSKYRRKP 258
HN+T + K R+P
Sbjct: 242 HNFTSQ-KGPREP 253
Score = 111 (44.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S + ++ +P AP L
Sbjct: 272 GLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLV 330
Query: 440 LRANSF 445
L F
Sbjct: 331 LERVHF 336
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 233 (87.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 58/193 (30%), Positives = 101/193 (52%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSH-ISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + + + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNF 241
Query: 246 HNYTERSKYRRKP 258
HN+T + K R+P
Sbjct: 242 HNFTSQ-KGPREP 253
Score = 111 (44.1 bits), Expect = 3.7e-24, Sum P(2) = 3.7e-24
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S + ++ +P AP L
Sbjct: 272 GLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLV 330
Query: 440 LRANSF 445
L F
Sbjct: 331 LERVHF 336
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 231 (86.4 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 54/198 (27%), Positives = 100/198 (50%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 145
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSH-ISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + + + N
Sbjct: 146 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 205
Query: 234 AILNEFEGEHPFHNYTER 251
+L ++G H FHN+T +
Sbjct: 206 RLLACYKGTHNFHNFTSQ 223
Score = 109 (43.4 bits), Expect = 4.2e-24, Sum P(2) = 4.2e-24
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + S R I C + G + I + G+SFM+HQIRKMVG VA+ +
Sbjct: 221 TSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGY 280
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S ++ +P AP L L F
Sbjct: 281 APESVLERSWGTE-KVDVPKAPGLGLVLERVHF 312
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 231 (86.4 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 58/193 (30%), Positives = 101/193 (52%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSH-ISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + + + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNF 241
Query: 246 HNYTERSKYRRKP 258
HN+T + K R+P
Sbjct: 242 HNFTSQ-KGPREP 253
Score = 111 (44.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S + ++ +P AP L
Sbjct: 272 GLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGEE-KVDVPKAPGLGLV 330
Query: 440 LRANSF 445
L F
Sbjct: 331 LERVHF 336
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 231 (86.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 54/198 (27%), Positives = 100/198 (50%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 173
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSH-ISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + + + N
Sbjct: 174 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 233
Query: 234 AILNEFEGEHPFHNYTER 251
+L ++G H FHN+T +
Sbjct: 234 RLLACYKGTHNFHNFTSQ 251
Score = 109 (43.4 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + S R I C + G + I + G+SFM+HQIRKMVG VA+ +
Sbjct: 249 TSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGY 308
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S ++ +P AP L L F
Sbjct: 309 APESVLERSWGTE-KVDVPKAPGLGLVLERVHF 340
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 226 (84.6 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 57/197 (28%), Positives = 102/197 (51%)
Query: 62 RPTPNSSDDKWEPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
R P+ D EP RK +K+ L + Y G Y G+Q TIE +L +AL ++G
Sbjct: 43 RSGPDGEPDG-EPHRKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSG 101
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HL
Sbjct: 102 CIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHL 151
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINS---QLTAAEIDSH-ISDFNA 234
P +I++ + F+ + +C+ R Y Y+LP Q + + + + N
Sbjct: 152 PPHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNG 211
Query: 235 ILNEFEGEHPFHNYTER 251
+L ++G H FHN+T +
Sbjct: 212 LLACYKGTHNFHNFTSQ 228
Score = 111 (44.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
Identities = 31/93 (33%), Positives = 43/93 (46%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + AS R I C + G + I + G+SFM HQIRKMVG VA+ +
Sbjct: 226 TSQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGY 285
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S +++ +P AP L L F
Sbjct: 286 APESVLERSWGD-AKVDVPKAPGLGLVLERVHF 317
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 228 (85.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 61/183 (33%), Positives = 99/183 (54%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++ K A+ +GY G Y G+Q+Q+D L TIE +L A+ AG I + +
Sbjct: 30 VKQAKYAMLLGYQGKKYYGMQLQKD---LPTIESKLLEAMETAGWITTAQKEKPFDFFFQ 86
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTD+ V S A +C M++P D D Y + A +N LP +I+VF + + F
Sbjct: 87 RAARTDRAV-SAARQMC-GMQLPRD---DAKYQAEGAGILNNILPADIRVFGMRRTTNFF 141
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
P+++C+ R YSY P+ V ++LT + +++ N+IL+ + G H F NYT +
Sbjct: 142 HPQKQCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAK 201
Query: 252 SKY 254
Y
Sbjct: 202 RAY 204
Score = 108 (43.1 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V+I I G+SF+LHQIRKMVG + V R+L + + S + R+ +P+AP L L
Sbjct: 235 FVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRSF-EGQRMDIPMAPGLGLLLER 293
Query: 443 NSF 445
+
Sbjct: 294 THY 296
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 226 (84.6 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 57/197 (28%), Positives = 102/197 (51%)
Query: 62 RPTPNSSDDKWEPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
R P+ D EP RK +K+ L + Y G Y G+Q TIE +L +AL ++G
Sbjct: 76 RSGPDGEPDG-EPHRKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSG 134
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HL
Sbjct: 135 CIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHL 184
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINS---QLTAAEIDSH-ISDFNA 234
P +I++ + F+ + +C+ R Y Y+LP Q + + + + N
Sbjct: 185 PPHIRILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSAETLQRVNG 244
Query: 235 ILNEFEGEHPFHNYTER 251
+L ++G H FHN+T +
Sbjct: 245 LLACYKGTHNFHNFTSQ 261
Score = 111 (44.1 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 31/93 (33%), Positives = 43/93 (46%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + AS R I C + G + I + G+SFM HQIRKMVG VA+ +
Sbjct: 259 TSQKGPQEASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGY 318
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S +++ +P AP L L F
Sbjct: 319 APESVLERSWGD-AKVDVPKAPGLGLVLERVHF 350
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 237 (88.5 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 62/169 (36%), Positives = 94/169 (55%)
Query: 73 EP-VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
EP + K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K
Sbjct: 69 EPRLPKRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKN 125
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ R++RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I
Sbjct: 126 GFMRAARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVN 176
Query: 192 RSFDPRRECNLRKYSYLLPA-EVIGIN-SQLTAAEIDSHISDFNAILNE 238
++FD R+ C+ R Y YLLP +IG + +I+ ++ +L+E
Sbjct: 177 KAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYRDIEESKTELPGVLDE 225
Score = 102 (41.0 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 226 (84.6 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 57/198 (28%), Positives = 102/198 (51%)
Query: 67 SSDD--KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
SS+D + + K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++
Sbjct: 77 SSEDGEQRRKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENH 136
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++
Sbjct: 137 GEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRI 186
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFE 240
+ F+ + +C+ R Y Y+LP E + N +L ++
Sbjct: 187 LGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACYK 246
Query: 241 GEHPFHNYTERSKYRRKP 258
G H FHN+T + K R+P
Sbjct: 247 GTHNFHNFTSQ-KGPREP 263
Score = 108 (43.1 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 25/66 (37%), Positives = 36/66 (54%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P +L S + +++ +P AP L
Sbjct: 282 GMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLERSWGE-AKVDVPKAPGLGLV 340
Query: 440 LRANSF 445
L F
Sbjct: 341 LERVHF 346
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 229 (85.7 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 57/200 (28%), Positives = 106/200 (53%)
Query: 67 SSDD--KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
SS+D + + K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++
Sbjct: 77 SSEDGEQQRKLPKRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENH 136
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++
Sbjct: 137 GEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRI 186
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGI---NSQLTAAEIDSH-ISDFNAILNEFE 240
+ F+ + +C+ R Y Y+LP +SQ + + + N +L ++
Sbjct: 187 LGLKRVTGGFNSKNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLACYK 246
Query: 241 GEHPFHNYTERSKYRRKPHK 260
G H FHN+T + + PH+
Sbjct: 247 GTHNFHNFTSQ----KGPHE 262
Score = 104 (41.7 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P +L + +++ +P AP L
Sbjct: 282 GMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLERCWGE-AKVDVPKAPGLGLV 340
Query: 440 LRANSF 445
L F
Sbjct: 341 LERVHF 346
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 206 (77.6 bits), Expect = 8.2e-23, Sum P(3) = 8.2e-23
Identities = 48/136 (35%), Positives = 78/136 (57%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K ++ + +GY G Y G+Q+ + L TIEG++ L K G ++ +N + + + AR+
Sbjct: 38 KVRIIILLGYSGYGYHGIQIN---NPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARA 93
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAHLPRNIKVFSILPSQRSFD 195
+RTDKGVH+L +I L + + D P I L K +N L I+V+S+ P+ + F+
Sbjct: 94 ARTDKGVHTLRNLISLNLFV------DKPLDISLLKTELNEALCSQIRVWSVFPAPKYFN 147
Query: 196 PRRECNLRKYSYLLPA 211
PR C R Y YL+P+
Sbjct: 148 PRISCESRTYEYLIPS 163
Score = 113 (44.8 bits), Expect = 8.2e-23, Sum P(3) = 8.2e-23
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 357 DKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRD 416
D S S++R I S +CG + ++ ++I G SFML+QIRKM+ + + R P
Sbjct: 298 DSTSPSNYRFIESVTCGTPFVYENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTG 357
Query: 417 ILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
++ + + + + +P VL L+ FS
Sbjct: 358 LIDKAFDPNITMNISKSPGHVLLLKDIKFS 387
Score = 55 (24.4 bits), Expect = 8.2e-23, Sum P(3) = 8.2e-23
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 235 ILNEFEGEHPFHNYT 249
+L ++EG H FHN+T
Sbjct: 280 LLKKYEGRHNFHNFT 294
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 239 (89.2 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 74/233 (31%), Positives = 121/233 (51%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA VGY G+ Y G+Q+ TIEG+L A KAG + N + +K+A AR+
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPS---KTIEGDLFDAFVKAGAVSSYNADDPKKVALARA 99
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + +D+ L ++VN HLP +I+++ ++ + SF+P
Sbjct: 100 ARTDKGVHAAGNVISLKLIM-----EDEK----LIEKVNEHLPPSIRLWDVIRTINSFNP 150
Query: 197 RRECNLRKYSYLLP---------AEVIGI----NSQLTAAEIDS-HISDFNAILNEFEGE 242
R C R Y Y++P + ++G NS + A I+ +I+ + L EG+
Sbjct: 151 RTYCESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGK 210
Query: 243 HPFHNYTERSK-----YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFS 290
+ +Y +K Y + P G V+ +K A + E ++G E G S
Sbjct: 211 EFWDDYDIAAKEILSLYEQDPE--GFVNPYSKRGA-AALANSENNKGSEAGVS 260
Score = 93 (37.8 bits), Expect = 2.3e-22, Sum P(2) = 2.3e-22
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + G+SFMLHQIRKM+ A+ V R P + + + K ++I +P P L L +
Sbjct: 371 WISCKVHGQSFMLHQIRKMIALAILVVRTGCPVERIQDAFKK-TKINIPKGPGFGLLLES 429
Query: 443 NSF 445
F
Sbjct: 430 PFF 432
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 245 (91.3 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 54/135 (40%), Positives = 83/135 (61%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL TA AG I ++N + +K + R
Sbjct: 78 KKKVAVLIGYSGTGYKGMQLSTTE---KTIEGELFTAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP D+ +++N HL I+V+ IL + +SF
Sbjct: 135 ARTDKGVHAAGNIVSLKLIV------EDP---DIVQKINDHLSPQIRVWGILVANKSFSS 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRIYEYLIPS 200
Score = 79 (32.9 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
G ++ + + G+SFM+HQIRKMV A V R
Sbjct: 392 GTEWLSLKVHGQSFMMHQIRKMVAMATMVVR 422
Score = 51 (23.0 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 257 KPHKTGRVSKRAKASKDAVFSRVEESEGEEDG 288
KP+ T + SKR K+ ++A+ +ESE E++G
Sbjct: 541 KPNDTAQ-SKR-KSQREALAEVEQESEDEQNG 570
Score = 46 (21.3 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 236 LNEFEGEHPFHNYTERSKYR 255
L+++ G F+NYT + +YR
Sbjct: 351 LDKYVGTKNFYNYTIQKQYR 370
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 192 (72.6 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 48/131 (36%), Positives = 73/131 (55%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY G+ Y G+Q H TIEGE+ T LF G I E N +K ++ ++RTDKGV
Sbjct: 3 LGYCGSGYYGMQYN-PPHK--TIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDKGV 59
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H++ ++ LK+ + D +AK +NA LP I+V+ I P + F+ R C+ R
Sbjct: 60 HAMLNLLSLKITLREDT---------VAK-LNAALPPEIRVWGIQPVNKKFNARSACDSR 109
Query: 204 KYSYLLPAEVI 214
Y YL+P ++
Sbjct: 110 WYQYLIPEFIL 120
Score = 109 (43.4 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
Score = 59 (25.8 bits), Expect = 7.7e-22, Sum P(3) = 7.7e-22
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 227 SHISDFNAILNEFEGEHPFHNYT 249
S + F A + E+ G H FHN+T
Sbjct: 198 SKLDAFEAAMQEYVGTHNFHNFT 220
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 201 (75.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 57/191 (29%), Positives = 95/191 (49%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 94 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 150
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV S A +C +++P + +DL + NA LP+ I++F +
Sbjct: 151 ISCFQRAARTDKGV-SAARQVC-SVKLPEE--------LDL-EAFNADLPQQIRLFGVER 199
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIG-INSQLTAAEIDSHISD-----FNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP ++ IS L +EG
Sbjct: 200 VTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTK 259
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 260 NFHNFTSKKSF 270
Score = 114 (45.2 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 37/120 (30%), Positives = 56/120 (46%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 296 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVLDT 354
Query: 443 NSFS-VRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
+ R G +++E V EF ++ K +A + +WI L
Sbjct: 355 VHYERYNDRYGKDGIHNPLTWQAQEA--QVQEFIEREIFSQIYK-TEAEQRNMLDWIGTL 411
>DICTYBASE|DDB_G0286567 [details] [associations]
symbol:DDB_G0286567 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0286567 GO:GO:0003723 EMBL:AAFI02000089
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_637536.1 ProteinModelPortal:Q54LM5
EnsemblProtists:DDB0187011 GeneID:8625675 KEGG:ddi:DDB_G0286567
InParanoid:Q54LM5 ProtClustDB:CLSZ2846682 Uniprot:Q54LM5
Length = 615
Score = 230 (86.0 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 69/218 (31%), Positives = 104/218 (47%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK +AL Y G+ Y G D IE +E +L + G I N GNL++I +RS
Sbjct: 147 KKPMALCFAYNGSKYYGSSYSFDIR-FPAIENLIEKSLIRNGHIALENIGNLKRIKLSRS 205
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGID---LAKRVNAHLPRNIKVFSILPSQRS 193
SRTDKGVHS++T+I + I + + +G +N +LP +I++ S R+
Sbjct: 206 SRTDKGVHSVSTVISAFLLIDKETERLAQFGTPPQYFIDNINRYLPSDIRLISATKPSRT 265
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT-ERS 252
F R R Y+YL+P + + D I N+IL+ F G FHNYT +R
Sbjct: 266 FRARPASKSRVYNYLVPMDHLK----------DISIDRMNSILSNFIGTSSFHNYTYQRF 315
Query: 253 KY--RRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDG 288
Y K +++ +++ EE + EEDG
Sbjct: 316 TYLDSNTLKKLSKINDTQDENENNDDEEDEEEDDEEDG 353
Score = 84 (34.6 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 388 ISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSV 447
+ G+SF+++QIRKM+G ++V + L LSL I P++P LFL +F
Sbjct: 420 VVGDSFLMYQIRKMMGFFLSVVKGYQNEIGLQLSLKSPFSICSPISPPFPLFLYDVNFP- 478
Query: 448 RTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKF 504
R + P S +I +EF S +P + K + T ++E+ L F
Sbjct: 479 --REKILLPV------SRQIQ---NEFLNSKLMPHLHKIENETNQ-FSEFFNQLSTF 523
Score = 45 (20.9 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 488 DATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESKTIV 533
D TK + +E LEK + N ++D + + +L+++ +TI+
Sbjct: 355 DNTKIDIEKEVEELEKLENKKNIEIDRLAES-ELFRKNPVNVRTIM 399
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 185 (70.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 44/151 (29%), Positives = 82/151 (54%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIE +L +AL ++G I E++ +++K+++ R +RTDKGV + ++ LK+ W D
Sbjct: 58 TIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID 111
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE 224
D+ +++N+HLP +I++ + F+ + C+ R Y YLLP + E
Sbjct: 112 ----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDE 167
Query: 225 ---IDSH-ISDFNAILNEFEGEHPFHNYTER 251
+ + + N +L ++G H FHN+T +
Sbjct: 168 TYRLSAETLQQVNRLLACYKGTHNFHNFTSQ 198
Score = 109 (43.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 30/93 (32%), Positives = 42/93 (45%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + S R I C + G + I + G+SFM+HQIRKMVG VA+ +
Sbjct: 196 TSQKGPQDPSACRYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGY 255
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S ++ +P AP L L F
Sbjct: 256 APESVLERSWGTE-KVDVPKAPGLGLVLERVHF 287
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 155 (59.6 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 45/136 (33%), Positives = 71/136 (52%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+ V V Y GT + GLQ + + TI+ L A + G + + N + +KI
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNAN---VKTIQDTLFQAFARVGAVVQVNADSPKKIRMCS 91
Query: 136 SSRTDKGVHSLATMICLK-MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGVH++ ++ LK ++ P P+ ++L VN LP I+V+ + + SF
Sbjct: 92 AARTDKGVHAIVNVLGLKVLDNQPL-----PHVVNL---VNDILPPCIRVWKMARTFNSF 143
Query: 195 DPRRECNLRKYSYLLP 210
P C+ R Y Y LP
Sbjct: 144 SPHTVCDSRVYEYWLP 159
Score = 101 (40.6 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 32/108 (29%), Positives = 53/108 (49%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V++ G+SFM HQIRKMVG + + R +L + RI +P AP+E L L
Sbjct: 268 WVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQ 327
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEF-YTSVTLPEVSKFLDA 489
F + +R + + VE K +D+F ++ + P F+ +
Sbjct: 328 PIFQAFNKK-CSRFDHEP-VEWSCAQKGIDQFAHSFLRTPMFDCFISS 373
Score = 44 (20.5 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 239 FEGEHPFHNYT 249
F G H FH+YT
Sbjct: 227 FRGTHRFHSYT 237
>UNIPROTKB|F5GY32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730 GO:GO:0003677
GO:GO:0045944 GO:GO:0003723 GO:GO:0005667 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 EMBL:AC131009
Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI01009368 ProteinModelPortal:F5GY32 SMR:F5GY32
Ensembl:ENST00000538037 ArrayExpress:F5GY32 Bgee:F5GY32
Uniprot:F5GY32
Length = 154
Score = 165 (63.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 37/127 (29%), Positives = 70/127 (55%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 145
Query: 178 LPRNIKV 184
LP +I++
Sbjct: 146 LPSHIRI 152
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 170 (64.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 55/190 (28%), Positives = 88/190 (46%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA + Y+G +Y GL +Q + L T+E AL K I+E ++++
Sbjct: 124 WSKQNMRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEP----IEEV 179
Query: 132 AWARSSRTDKGVHSLATMICLKME--IPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFS 186
++R RTDKGV ++ +I + + I + + D ID +NA+LP +IKV S
Sbjct: 180 KFSRCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDDLEIDYISVLNANLPSDIKVHS 239
Query: 187 I-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
I L FD R C R Y Y+ + + I A++ I DF + +G
Sbjct: 240 ICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFC-KLDGSKQI 298
Query: 246 HNYTERSKYR 255
N+ R Y+
Sbjct: 299 TNFV-REIYQ 307
Score = 52 (23.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
Y + G +F+ HQ+R MV + + L I+T
Sbjct: 317 YYCFDLKGSAFLWHQVRCMVAILFTIGQSLESPSIIT 353
>FB|FBgn0034703 [details] [associations]
symbol:CG3045 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE013599 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444
EMBL:AY058376 RefSeq:NP_611646.1 UniGene:Dm.4296 SMR:Q9W282
STRING:Q9W282 EnsemblMetazoa:FBtr0071787 GeneID:37531
KEGG:dme:Dmel_CG3045 UCSC:CG3045-RA FlyBase:FBgn0034703
InParanoid:Q9W282 OMA:CQVISID OrthoDB:EOG4N5TCH GenomeRNAi:37531
NextBio:804123 Uniprot:Q9W282
Length = 499
Score = 146 (56.5 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 49/168 (29%), Positives = 76/168 (45%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D + TIE L AL + I N
Sbjct: 93 WSSAHKRHVLLKITYFGWDYQGFACQEDSND--TIESNLFRALARTCLIESRATSN---- 146
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 147 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTALSSEIDYCGLLNRVLPKNIQCV 204
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + + R +C R Y Y P + I + A ++ +DF
Sbjct: 205 AWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHADF 252
Score = 53 (23.7 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 31/136 (22%), Positives = 52/136 (38%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G+ + I +F+ HQIR ++ + V +K +++ L S P + +
Sbjct: 288 GYDMYYLEIQANAFLWHQIRCIMAVLLLVGQKKENPGVISDLLDVESNPCKPQY-TPAIG 346
Query: 440 LRANSFSVRTRPGVTRP--EMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEW 497
L N F R TR + EE + + + PE L+ + W
Sbjct: 347 LPLNLFRCDFRDHTTRSVNHPSSGDADEEAMDTAADESNDLNAPE---HLERDLTAWIYN 403
Query: 498 IENLEKFTSIPNEQLD 513
ENL+K I N Q +
Sbjct: 404 EENLQKL--IENTQCE 417
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 130 (50.8 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 46/155 (29%), Positives = 70/155 (45%)
Query: 67 SSDDKWEPVRK---KK---VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
SS K +PVR +K VA + Y G +Y GL Q + L T+EG++ AL +A I
Sbjct: 75 SSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLI 134
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
+ + +++R RTDKGV ++ +I L + + I +N LP
Sbjct: 135 TDPS-----SCSFSRCGRTDKGVSAMGQVISLNVR------HSERRPIIYCDVLNRLLPA 183
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG 215
+I++ FD R C R Y YL + G
Sbjct: 184 DIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPG 218
Score = 68 (29.0 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 355 EADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP 414
+A K ++ R+I S ++ S G Y + G +F+ HQ+R M+ + +KL P
Sbjct: 246 DASKQITNYHRRILSSKVICIDPSTGL-YA-FDLQGTAFLWHQVRCMMAILFLIGQKLEP 303
Query: 415 RDIL 418
++
Sbjct: 304 ASLI 307
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 150 (57.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 53/170 (31%), Positives = 82/170 (48%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALIKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY---GID-LAKRVN-AH-----LPRNIKV 184
RTDKGV + +I L + + P +D G D +AK + AH LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P++ SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 174 LAWAPAEPSFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTH--DF 221
Score = 45 (20.9 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 381 FGYVEISISGESFMLHQIRKMV 402
F + + G++F+ HQ+R M+
Sbjct: 261 FQLCQFEVIGQAFLYHQVRCMM 282
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 147 (56.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 48/175 (27%), Positives = 81/175 (46%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMV---LQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKME--IPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + + +D D I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
FD R C R Y Y+ + + I AA DF + +G N+
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNFC-KLDGSKQITNF 264
Score = 47 (21.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 390 GESFMLHQIRKMVGTAVAVKRKL-LPRDILTLS 421
G +F+ HQ+R M+ V + L +P +L L+
Sbjct: 287 GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLT 319
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 143 (55.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 52/170 (30%), Positives = 79/170 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTH--DF 223
Score = 47 (21.6 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 371 SCGKLEKSLGFGYVEISISGESFMLHQIRKMV 402
S G+ + F + + G++F+ HQ+R M+
Sbjct: 253 SPGEERRQEPFQLCQFEVIGQAFLYHQVRCMM 284
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 89 (36.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-----RESNYGNLQKIAWA 134
+AL++ Y+G +Y GL+ Q +L IE EL AL K I R+ + + + ++
Sbjct: 168 IALKLAYLGKNYNGLEYQ-PSGALPAIEEELWKALVKTCLIFPDPERDPSEVDFKVCDYS 226
Query: 135 RSSRTDKGVHSLATMICLKME 155
+ RTD+GV + ++ L+++
Sbjct: 227 KCGRTDRGVSAFGQVVALRVK 247
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 168 IDLAKRVNAHLPRNIKVFSILPSQR-SFDPRRECNLRKYSYL--------LPAEVIGINS 218
I K +NA LP +I+V + P+ F R C+ R+Y Y +PA + G+
Sbjct: 313 IKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFFTQPIFSPVPARLDGVMG 372
Query: 219 --QLTAAEIDSHISDFNAILNE---FEGEHPFHNY 248
+ + D ++ D +A+ FEGEH F N+
Sbjct: 373 YKEPGSTHKDGYL-DLDAMREAARLFEGEHDFRNF 406
Score = 65 (27.9 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 22/76 (28%), Positives = 37/76 (48%)
Query: 388 ISGESFMLHQIRKMVGTAVAVKRKLLPRDILT--LSLAKH-SRIVLPLAPSEVLFLRANS 444
+ G +F+ HQIR M+ V ++L I++ L + K+ + P+A L L
Sbjct: 463 VRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCL 522
Query: 445 FSVRTRP-GVTRPEMQ 459
+ RT P G T E++
Sbjct: 523 YGGRTLPDGSTHGELE 538
>UNIPROTKB|F5H168 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010216
ProteinModelPortal:F5H168 SMR:F5H168 Ensembl:ENST00000535067
ArrayExpress:F5H168 Bgee:F5H168 Uniprot:F5H168
Length = 134
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDK 141
G I E++ +++K+++ R +RTDK
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDK 119
>UNIPROTKB|F8W9U5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009394
ProteinModelPortal:F8W9U5 SMR:F8W9U5 Ensembl:ENST00000456665
ArrayExpress:F8W9U5 Bgee:F8W9U5 Uniprot:F8W9U5
Length = 156
Score = 118 (46.6 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDK 141
G I E++ +++K+++ R +RTDK
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDK 119
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 138 (53.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 46/170 (27%), Positives = 75/170 (44%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ Q + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQ--ENTDNTVEARLFEALLKTKLIQDR-----QTSCYHRC 109
Query: 137 SRTDKGVHSLATMICLKME-----------IPPDA---WKDDPYGIDLAKRVNAHLPRNI 182
RTDKGV + + +I + + +P D K + K +N LP +I
Sbjct: 110 GRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDI 169
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
++ P + F R +C R Y Y P + + AA+ DF
Sbjct: 170 RILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDF 219
Score = 44 (20.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 388 ISGESFMLHQIRKMVGTAVAVKRKLLPRDILT--LSLAKHSR 427
+ G + + HQ+R M+ + + +KL +++ L + K+ R
Sbjct: 265 VKGLALLYHQVRCMMALLLLIGQKLEAPEVIDQLLDVEKNPR 306
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 121 (47.7 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 47/181 (25%), Positives = 81/181 (44%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y+G ++ GL Q H+ +T+E + AL K I + + + R+
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQ--PHTQNTVENHIMQALIKTHLIEDWTKCDFSRCG--RT 84
Query: 137 SRTDKGVHSLATMICLKMEIPPDA---WKDDP-------Y---GIDL--AKRVNAHLPRN 181
+ A M+ + P D+ W D Y G +L K +N LP+
Sbjct: 85 DKGVSAFKQTAAMVVRSL-CPGDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKT 143
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSH-ISDFNAI-LN 237
I+VF+ P ++F+ R +CN R Y Y + + AE + H S+F I +N
Sbjct: 144 IRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELLVGEHDFSNFCQIDMN 203
Query: 238 E 238
E
Sbjct: 204 E 204
Score = 60 (26.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 358 KLSASHFRKIFSCSCGKL----EKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLL 413
+L S+ RK++ ++ E + + VE+++SG F+ H IR +V + R+
Sbjct: 206 RLLQSYVRKVYEVKVEQVSTHPENDM-YSMVELTVSGSGFLWHMIRYIVTILQEIGRENE 264
Query: 414 PRDILT--LSLAKH-SRIVLPLAPSEVLFL 440
+++ L L K+ SR LA L L
Sbjct: 265 QPSLISQLLDLKKYPSRPQYTLASDTPLCL 294
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 135 (52.6 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 51/170 (30%), Positives = 79/170 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFDALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + +D D+AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTH--DF 221
Score = 45 (20.9 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 381 FGYVEISISGESFMLHQIRKMV 402
F + + G++F+ HQ+R M+
Sbjct: 261 FQLCQFEVVGQAFLYHQVRCMM 282
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 131 (51.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 50/170 (29%), Positives = 79/170 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGI-----DLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + + + D+A + N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTH--DF 222
Score = 49 (22.3 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 365 RKIFSCSCGKLEKSLG-------FGYVEISISGESFMLHQIRKMV 402
R I S ++ ++LG F + ++G++F+ HQ+R M+
Sbjct: 239 RTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMM 283
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 131 (51.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 50/170 (29%), Positives = 79/170 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGI-----DLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + + + D+A + N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTH--DF 222
Score = 49 (22.3 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 365 RKIFSCSCGKLEKSLG-------FGYVEISISGESFMLHQIRKMV 402
R I S ++ ++LG F + ++G++F+ HQ+R M+
Sbjct: 239 RTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMM 283
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 128 (50.1 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 51/185 (27%), Positives = 80/185 (43%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K+ VAL++ Y G + G + + +E +E+ +FKA G+ + ++
Sbjct: 87 ISKRYVALKIMYFGKRFYGFSAE------AQMEPSIESEVFKALERTRLLVGDKKDSCYS 140
Query: 135 RSSRTDKGVHSLATMICL----KMEIPPDAWKDDPYG-------IDLAKRVNAHLPRNIK 183
R RTDKGV S +I L +++ PP K G D + +N LP +I+
Sbjct: 141 RCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIR 200
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
V P+ F R C R+Y Y + N L+A DF +F GEH
Sbjct: 201 VIGWSPAPIDFHARFSCYAREYKYFFWRQ----NLNLSAM-------DFAG--KKFIGEH 247
Query: 244 PFHNY 248
F N+
Sbjct: 248 DFRNF 252
Score = 51 (23.0 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 387 SISGESFMLHQIRKMVGTAVAVKRKLLPRDILT--LSLAKHSRIVLPLAPSEV-LFLRAN 443
++ G +F+ HQIR MV + + + D++ L K R L SE+ L LR
Sbjct: 288 TMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTC 347
Query: 444 SF 445
F
Sbjct: 348 EF 349
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKR-KLLPRDILTLSLAKHSRI--VLPLAPSE 436
G + E+ SF+ Q+R+MVG VAV + KL P I L K +R +APS
Sbjct: 211 GLQFWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPSS 270
Query: 437 VLFLRANSFSVRTRPGVTRPE 457
LFL++ ++ VT E
Sbjct: 271 GLFLKSVEYNEADLQTVTPGE 291
Score = 78 (32.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 37/125 (29%), Positives = 49/125 (39%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHS 145
Y GT Y G+ E S ++ LE A N + I + SSRTD GVH+
Sbjct: 14 YWGTKYSGVMQTSAEQSGIGVQNYLEKAA--------QNLKPVVPIKFHISSRTDSGVHA 65
Query: 146 LATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL-PRNIKVFSILPSQRSFDPRRECNLRK 204
L L ++ P K L +N HL P I++ S +F R R
Sbjct: 66 LCNSAHLDIQRAPG--KPAFQERVLIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRT 123
Query: 205 YSYLL 209
Y Y L
Sbjct: 124 YIYRL 128
>UNIPROTKB|F5GXL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01010630
ProteinModelPortal:F5GXL3 Ensembl:ENST00000537484
ArrayExpress:F5GXL3 Bgee:F5GXL3 Uniprot:F5GXL3
Length = 200
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 40/155 (25%), Positives = 70/155 (45%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDKG--VHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
G I E++ +++K+++ R +RTDK + L + C M + + K L N
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDKSQDLILLPRLECSGMIMAHCSLK-------LLGSSN 148
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
P + + F+ + C+ R Y YLLP
Sbjct: 149 P--PASASRVGLKRVTGGFNSKNRCDARTYCYLLP 181
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 121 (47.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 49/172 (28%), Positives = 76/172 (44%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + + N + R
Sbjct: 58 RRHVALRIAYLGWGYQGFASQ--ENTSNTIEEKLFEALKKTRLVDDRQTSN-----YHRC 110
Query: 137 SRTDKGVHSLATMICLKM------EIPPDAWKDDPYG--------IDLAKRVNAHLPRNI 182
RTDKGV + +I L + E + D G + +N LP +I
Sbjct: 111 GRTDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDI 170
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+V + P + F R C R Y Y P + + TAA+ + +H DF
Sbjct: 171 RVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTH--DF 220
Score = 53 (23.7 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 381 FGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT--LSLAKHSR 427
F + ++G++F+ HQ+R M+ + +++ +I+ L + K+ R
Sbjct: 259 FRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPEIIDELLDVEKNPR 307
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 130 (50.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 54/172 (31%), Positives = 80/172 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD-DPYGIDLAKRVN--------AH-----LPRNI 182
RTDKGV + +I L ++ KD D I+L VN H LP +I
Sbjct: 114 GRTDKGVSAFGQVISL--DLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDI 171
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+V + P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 172 RVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTH--DF 221
Score = 45 (20.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 381 FGYVEISISGESFMLHQIRKMV 402
F + + G++F+ HQ+R M+
Sbjct: 261 FQLCQFEVVGQAFLYHQVRCMM 282
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 130 (50.8 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 54/172 (31%), Positives = 80/172 (46%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD-DPYGIDLAKRVN--------AH-----LPRNI 182
RTDKGV + +I L ++ KD D I+L VN H LP +I
Sbjct: 114 GRTDKGVSAFGQVISL--DLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDI 171
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+V + P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 172 RVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTH--DF 221
Score = 45 (20.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 381 FGYVEISISGESFMLHQIRKMV 402
F + + G++F+ HQ+R M+
Sbjct: 261 FQLCQFEVVGQAFLYHQVRCMM 282
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 125 (49.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 48/170 (28%), Positives = 77/170 (45%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGID-----LAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + + + A+ + N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ + +H DF
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTH--DF 222
Score = 48 (22.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 381 FGYVEISISGESFMLHQIRKMV 402
F + ++G++F+ HQ+R M+
Sbjct: 262 FQLCQFEVTGQAFLYHQVRCMM 283
>UNIPROTKB|F5H1B2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020103 GO:GO:0003723 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1 IPI:IPI01009817
ProteinModelPortal:F5H1B2 SMR:F5H1B2 Ensembl:ENST00000544213
ArrayExpress:F5H1B2 Bgee:F5H1B2 Uniprot:F5H1B2
Length = 184
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDK 141
G I E++ +++K+++ R +RTDK
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDK 147
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 101 (40.6 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 45/147 (30%), Positives = 67/147 (45%)
Query: 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD 163
+TI+GELETA+ K + G S RTD GVH+ ++ E
Sbjct: 22 ATIQGELETAIRKLTSEQTRVSG---------SGRTDAGVHAAYQVVSYLSE-------- 64
Query: 164 DPYGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSY-LLPAEVIGINSQLT 221
G+D K +N +LP +I V + SFD RR R+YSY +L ++ ++L
Sbjct: 65 SSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSPLARLQ 124
Query: 222 AAEIDSHISDFNAILNEF---EGEHPF 245
A ++ + D + F EGEH F
Sbjct: 125 AWQVPYKL-DIKLMEQAFKMLEGEHDF 150
Score = 63 (27.2 bits), Expect = 6.3e-05, Sum P(2) = 6.3e-05
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 387 SISGESFMLHQIRKMVGTAVAVKRKLLPR-DILTLSLAKHSRIVLPLAPSEVLFL-RAN 443
+I SF+ HQ+R +GT V + R + + L AK + P AP+ L L R N
Sbjct: 183 NIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVRVN 241
>TIGR_CMR|ECH_0622 [details] [associations]
symbol:ECH_0622 "tRNA pseudouridine synthase A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 ProtClustDB:PRK00021
RefSeq:YP_507432.1 ProteinModelPortal:Q2GGK1 STRING:Q2GGK1
GeneID:3927636 KEGG:ech:ECH_0622 PATRIC:20576696 OMA:YSINANR
BioCyc:ECHA205920:GJNR-624-MONOMER Uniprot:Q2GGK1
Length = 245
Score = 93 (37.8 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 46/184 (25%), Positives = 78/184 (42%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ + Y G+++ G Q Q+ HS ++I+ LE A+ K + Y +A RTD
Sbjct: 5 ITIEYNGSNFIGWQKQK--HSSNSIQEILENAILKFSQQHTTVY-----VA----GRTDA 53
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL-PRNIKVFSILPSQRSFDPRREC 200
GVH+L + ++ + D Y + A +N HL P I + S+ + F R
Sbjct: 54 GVHALGQVA--HFDLTTNL---DTYVVRNA--INYHLIPHAIAILSVEKTDDKFHARFSA 106
Query: 201 NLRKYSYLLPAEVIGINSQLTAAE-IDSHISDFNAI--LNEFEGEHPFHNYTERSKYRRK 257
R Y Y + + A I + ++ N I + +G H F ++ R +
Sbjct: 107 KKRHYLYKIINRYSPLTIDYNRAWLIHNPLNIENMIQAIEYIKGNHDFSSFRARHCQSKN 166
Query: 258 PHKT 261
P KT
Sbjct: 167 PIKT 170
Score = 67 (28.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAV-KRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
+ I IS SF+ HQ+R +VGT V K P I + AK+ AP L+
Sbjct: 183 INIHISAISFLHHQVRIIVGTLVECGKNNFSPEHIKNILKAKNRSYAGMTAPPYGLY 239
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 81 (33.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 37/125 (29%), Positives = 52/125 (41%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
V YVGT + G Q Q S +++ ELE+ L ++ +KIA + RTD GV
Sbjct: 7 VEYVGTGFSGWQKQM---SAPSVQEELESVL---------SFLLKEKIAVNVAGRTDAGV 54
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF-SILPSQRSFDPRRECNL 202
H+L + DA + + VN HL + V I +FD R
Sbjct: 55 HALGQVFHF------DARESTLQPFQIVNAVNYHLKEKLIVLLKIEIVDETFDARFSAIR 108
Query: 203 RKYSY 207
R Y Y
Sbjct: 109 RHYQY 113
Score = 78 (32.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 30/98 (30%), Positives = 44/98 (44%)
Query: 354 DEADKLSASH-FRKIFSCSCGKLEKSLGFGYVEISISGE---------SFMLHQIRKMVG 403
++A L H F+ S CG +E+ +GE SF+ HQ+R MVG
Sbjct: 143 EQAQYLVGKHDFQSFRSSKCGASNAIRTLDRLEVEKNGEEMIFHASAKSFLHHQVRIMVG 202
Query: 404 TAVAVKR-KLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
T VA+ KL+ + + K+ R P AP L+L
Sbjct: 203 TLVAIASGKLM--SVTEILSKKNRRYAGPTAPPCGLYL 238
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 539 511 0.00087 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 53
No. of states in DFA: 622 (66 KB)
Total size of DFA: 313 KB (2160 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.99u 0.08s 43.07t Elapsed: 00:00:03
Total cpu time: 43.00u 0.08s 43.08t Elapsed: 00:00:03
Start: Tue May 21 12:03:16 2013 End: Tue May 21 12:03:19 2013