BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009253
(539 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147800604|emb|CAN68579.1| hypothetical protein VITISV_034891 [Vitis vinifera]
Length = 602
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 348/549 (63%), Positives = 401/549 (73%), Gaps = 40/549 (7%)
Query: 1 MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTL 60
M + LR PW + TS L FSN +LP C +SSSS T+
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLR---FSNP----RILPQWSLHCSSSSSS--------TV 45
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
T P+ S KWE RKKKV +RVGYVGT+YRGLQMQRDE SLSTIEGELETA+FKAGGI
Sbjct: 46 TESNPDQSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGI 105
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
R+SNYGNL KI W RSSRTDKGVHSLATMI LKMEIP +AWK+DP GI LA VN HLP
Sbjct: 106 RDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPN 165
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
NIKVFSILPSQRSFD RREC+LR+YSYLLPAE+IGI S +A+EID HI++FN ILN FE
Sbjct: 166 NIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE 225
Query: 241 GEHPFHNYTERSKYRRK-PHK----TGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
GEHPF NYT RSKYR++ P K G V +RAK+S +A S+ E S
Sbjct: 226 GEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEA-------------STSEFEVS 272
Query: 296 DGEEDLGIGGEISSD-DEKANQNSMVSGV---HQEDCCNQHANGLKDQNSSSVIRARWLY 351
DGEE+ G+ G ISSD DE NQNS S H N + GLK+Q+S V+RARWL+
Sbjct: 273 DGEENSGVNGVISSDYDEGENQNSSESTSFVEHPVGSSNNNEKGLKEQSSKLVVRARWLH 332
Query: 352 ETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRK 411
DE D++SASHFRKIF+CSCGKLEK LG YVE+SI GESFMLHQIRKMVGTA+AVKR+
Sbjct: 333 GPDERDRISASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRE 392
Query: 412 LLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKM 470
LLPRDILTLSL K SRIVLPLAPSEVL LR NSFSVR +PG V RPEM T++ESEEILK
Sbjct: 393 LLPRDILTLSLTKFSRIVLPLAPSEVLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKS 452
Query: 471 VDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESK 530
VDEFYTSV LP+VSKFLD +KSPW +W+ENL +SIP +LD+VR AW+LWKE F S+
Sbjct: 453 VDEFYTSVILPQVSKFLDPSKSPWHDWLENL-TLSSIPEAELDDVRTAWKLWKEN-FRSR 510
Query: 531 TIVESAISV 539
T E +++
Sbjct: 511 TKCEDVLAL 519
>gi|225434389|ref|XP_002276856.1| PREDICTED: putative tRNA pseudouridine synthase-like [Vitis
vinifera]
Length = 564
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 349/545 (64%), Positives = 398/545 (73%), Gaps = 40/545 (7%)
Query: 1 MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTL 60
M + LR PW + TS L FSN +LP C +SSSS T+
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLR---FSNP----RILPQWSLHCSSSSSS--------TV 45
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
T P+ S KWE RKKKV +RVGYVGT+YRGLQMQRDE SLSTIEGELETA+FKAGGI
Sbjct: 46 TESNPDQSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGI 105
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
R+SNYGNL KI W RSSRTDKGVHSLATMI LKMEIP +AWK+DP GI LA VN HLP
Sbjct: 106 RDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPN 165
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
NIKVFSILPSQRSFD RREC+LR+YSYLLPAE+IGI S +A+EID HI++FN ILN FE
Sbjct: 166 NIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE 225
Query: 241 GEHPFHNYTERSKYRRK-PHK----TGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
GEHPF NYT RSKYR++ P K G V +RAK+S +A S+ E S
Sbjct: 226 GEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEA-------------STSEFEVS 272
Query: 296 DGEEDLGIGGEISSD-DEKANQNSMVSGV---HQEDCCNQHANGLKDQNSSSVIRARWLY 351
DGEE+ GI G ISSD DE NQNS S H N + GLK+Q+ V+RARWL+
Sbjct: 273 DGEENSGINGVISSDYDEGENQNSSESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLH 332
Query: 352 ETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRK 411
DE D++SASHFRKIF+CSCGKLEK LG YVE+SI GESFMLHQIRKMVGTA+AVKR+
Sbjct: 333 GPDERDRISASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRE 392
Query: 412 LLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKM 470
LLPRDILTLSL K SRIVLPLAPSEVL LR NSFSVR +PG V RPEM T++ESEEILK
Sbjct: 393 LLPRDILTLSLTKFSRIVLPLAPSEVLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKS 452
Query: 471 VDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESK 530
VDEFYTSV LP+VSKFLD +KSPW +W+ENL +SIP +LD+VR AW+LWKE F S+
Sbjct: 453 VDEFYTSVILPQVSKFLDPSKSPWHDWLENL-TLSSIPEAELDDVRTAWKLWKEN-FRSR 510
Query: 531 TIVES 535
T V S
Sbjct: 511 TKVMS 515
>gi|297745794|emb|CBI15850.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 338/545 (62%), Positives = 384/545 (70%), Gaps = 61/545 (11%)
Query: 1 MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTL 60
M + LR PW + TS L FSN +LP C +SSSS T+
Sbjct: 1 MVVSSLRFPLFPWIISNHTSNLR---FSNP----RILPQWSLHCSSSSSS--------TV 45
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
T P+ S KWE RKKKV +RVGYVGT+YRGLQMQRDE SLSTIEGELETA+FKAGGI
Sbjct: 46 TESNPDQSVQKWESFRKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGI 105
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
R+SNYGNL KI W RSSRTDKGVHSLATMI LKMEIP +AWK+DP GI LA VN HLP
Sbjct: 106 RDSNYGNLHKIGWDRSSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPN 165
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
NIKVFSILPSQRSFD RREC+LR+YSYLLPAE+IGI S +A+EID HI++FN ILN FE
Sbjct: 166 NIKVFSILPSQRSFDARRECDLRRYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFE 225
Query: 241 GEHPFHNYTERSKYRRK-PHK----TGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
GEHPF NYT RSKYR++ P K G V +RAK+S
Sbjct: 226 GEHPFQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSV----------------------- 262
Query: 296 DGEEDLGIGGEISSD-DEKANQNSMVSGV---HQEDCCNQHANGLKDQNSSSVIRARWLY 351
ISSD DE NQNS S H N + GLK+Q+ V+RARWL+
Sbjct: 263 -----------ISSDYDEGENQNSSESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLH 311
Query: 352 ETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRK 411
DE D++SASHFRKIF+CSCGKLEK LG YVE+SI GESFMLHQIRKMVGTA+AVKR+
Sbjct: 312 GPDERDRISASHFRKIFNCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRE 371
Query: 412 LLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKM 470
LLPRDILTLSL K SRIVLPLAPSEVL LR NSFSVR +PG V RPEM T++ESEEILK
Sbjct: 372 LLPRDILTLSLTKFSRIVLPLAPSEVLILRGNSFSVRKKPGNVKRPEMLTLMESEEILKS 431
Query: 471 VDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESK 530
VDEFYTSV LP+VSKFLD +KSPW +W+ENL +SIP +LD+VR AW+LWKE F S+
Sbjct: 432 VDEFYTSVILPQVSKFLDPSKSPWHDWLENL-TLSSIPEAELDDVRTAWKLWKEN-FRSR 489
Query: 531 TIVES 535
T V S
Sbjct: 490 TKVMS 494
>gi|224126927|ref|XP_002319961.1| predicted protein [Populus trichocarpa]
gi|222858337|gb|EEE95884.1| predicted protein [Populus trichocarpa]
Length = 445
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 300/466 (64%), Positives = 354/466 (75%), Gaps = 36/466 (7%)
Query: 60 LTRPTPNSS-DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
LT N S KWE +RKKKVALRVGYVGTDYRGLQ Q D+HSL TIEGELE A+++AG
Sbjct: 13 LTDSNSNQSLHSKWESIRKKKVALRVGYVGTDYRGLQKQHDQHSLLTIEGELERAIYEAG 72
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
GIRESNYGNL KI+WARSSRTDKGVHSLAT I +KMEIP +AWKDD YG+ LAK VN++L
Sbjct: 73 GIRESNYGNLNKISWARSSRTDKGVHSLATTITMKMEIPENAWKDDLYGMVLAKHVNSYL 132
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNE 238
P +I+V SILP+Q+SFDPRREC++RKYSYLLPAEVIGI S + AEID HISDFN ILN
Sbjct: 133 PDSIRVLSILPAQKSFDPRRECDIRKYSYLLPAEVIGIKSHFSMAEIDDHISDFNNILNA 192
Query: 239 FEGEHPFHNYTERSKYRRK-PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDG 297
FEG+HPFHNYT RSKYRRK P K G VSKRA++S S EE+ E
Sbjct: 193 FEGDHPFHNYTVRSKYRRKYPTKNGHVSKRARSSWGTSASGSEENHVE------------ 240
Query: 298 EEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEAD 357
+QNS+ S + C+ + + LKDQ+S+ +RARWL+E DE D
Sbjct: 241 ----------------LSQNSLESSI-----CDLNGDILKDQSSNLPLRARWLHEPDETD 279
Query: 358 KLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDI 417
++ A+HFRKIF CSCGKLEKSLGF +VEISI GESFMLHQIRKMVGTAVAVKRK+LPRD+
Sbjct: 280 RIGAAHFRKIFRCSCGKLEKSLGFDFVEISIWGESFMLHQIRKMVGTAVAVKRKVLPRDL 339
Query: 418 LTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQTMVESEEILKMVDEFYT 476
+ LSL K SRIVLPLAPSEVL LR N FS+R + G RPEM+TMVESEEIL+ V+EFY+
Sbjct: 340 IMLSLTKFSRIVLPLAPSEVLILRGNDFSLRKKSGEGKRPEMETMVESEEILRAVNEFYS 399
Query: 477 SVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLW 522
++ LP+VSKFLD W EW+ENL+K+TSIP+ QLDEVR A ++W
Sbjct: 400 TMMLPQVSKFLDPCMPLWKEWVENLDKYTSIPDAQLDEVRIARKVW 445
>gi|356499004|ref|XP_003518334.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 516
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/467 (61%), Positives = 349/467 (74%), Gaps = 20/467 (4%)
Query: 59 TLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
T + PTP+ +KWEP KKKV +RVGYVGTD+RGLQMQRDEH LST+E ELETA+F AG
Sbjct: 59 TQSLPTPS---EKWEPFLKKKVVMRVGYVGTDFRGLQMQRDEHRLSTVEKELETAIFTAG 115
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
G+R+SN+G+L K+ W RSSRTDKGVHSLATMI KMEIP +AWK D YGI LA R+N++L
Sbjct: 116 GMRDSNFGDLNKVKWGRSSRTDKGVHSLATMIAFKMEIPENAWKGDDYGIVLANRINSYL 175
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNE 238
P I+VFSILPS + FDPRRECNLRKYSYLLPA +IGI S + EID HIS+FN+ILN
Sbjct: 176 PNTIRVFSILPSTKRFDPRRECNLRKYSYLLPAGIIGIQSHFSQDEIDFHISEFNSILNV 235
Query: 239 FEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGE 298
FEGEHPFHNYT RSKYR+K R + D + R+ S S+ EE D +
Sbjct: 236 FEGEHPFHNYTVRSKYRKK------YQVRQSSGNDVMSDRIGSSSLTSACESESEEGDDD 289
Query: 299 EDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADK 358
+ + SD E++++ S +NGL QNSS V+RA+WLYE DE D+
Sbjct: 290 DFVSGRPTTFSDKEESHKPPESS----------ESNGLSSQNSSVVVRAKWLYEPDETDR 339
Query: 359 LSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL 418
L+ASHFRK+F CSCGKLE SLG+ Y+E+ I G+SFMLHQIRKMVGTAVAVKR L+PRD +
Sbjct: 340 LNASHFRKVFRCSCGKLETSLGYDYIEVHIWGDSFMLHQIRKMVGTAVAVKRNLIPRDAI 399
Query: 419 TLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTS 477
LSL+K SRIVLPLAP EVL LR N+F +R G TR EM +MVESE+IL+ VDEFYTS
Sbjct: 400 LLSLSKFSRIVLPLAPPEVLILRGNAFKMRASAGNFTRQEMVSMVESEQILEAVDEFYTS 459
Query: 478 VTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKE 524
V LPEVSKFLD++ SPW +W+ENL+K++SIP+ +LDEVR AW+ WKE
Sbjct: 460 VVLPEVSKFLDSSNSPWAKWVENLDKYSSIPDAELDEVRKAWKTWKE 506
>gi|356499006|ref|XP_003518335.1| PREDICTED: putative tRNA pseudouridine synthase-like, partial
[Glycine max]
Length = 453
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/482 (61%), Positives = 345/482 (71%), Gaps = 37/482 (7%)
Query: 41 CYRCPASSSSKSSPSVSHTLTRPT---PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQ 97
C R P K +P ++ R T SS W+P RKKKVA+ V YVGT+YRGLQMQ
Sbjct: 5 CMRAPLFPLLKKAPFITGKRRRRTWFHCCSSPQAWQPSRKKKVAMLVAYVGTNYRGLQMQ 64
Query: 98 RDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIP 157
DEHSLSTIE ELETA+FKAGGIRESN+G+LQKI WARSSRTDKGVHSLAT+I KMEIP
Sbjct: 65 HDEHSLSTIEKELETAIFKAGGIRESNFGDLQKIGWARSSRTDKGVHSLATIISFKMEIP 124
Query: 158 PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGIN 217
+AW DPYG LA VN++LP +IKV SILPSQRSFDPR+EC LRKYSYLLPAE+IGI
Sbjct: 125 ENAWNGDPYGFGLANYVNSYLPFDIKVISILPSQRSFDPRKECILRKYSYLLPAEIIGIQ 184
Query: 218 SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFS 277
S + E+D HIS+FN ILN FEG HPFHNYT RSKYR++ R +SK +
Sbjct: 185 SHFS-DEVDYHISEFNDILNVFEGIHPFHNYTARSKYRKQ------FPNRQSSSKSGTSA 237
Query: 278 RVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLK 337
R + + FS+ E +G N++ NGL
Sbjct: 238 REKNIVCQSQKFSETHHF-AEPVVG-------------------------SSNKNGNGLH 271
Query: 338 DQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQ 397
DQ+S V RARWLYE DEAD+LSASHFRK+F CSCGKLE SLG+ Y+EISI GESFMLHQ
Sbjct: 272 DQDSRLVARARWLYEPDEADRLSASHFRKVFQCSCGKLETSLGYNYIEISIQGESFMLHQ 331
Query: 398 IRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRP 456
IRKMVGTAVAVKRK LP+DI+ LSL + SRI+LPLAPSE L LR N FS+RTRPG +TRP
Sbjct: 332 IRKMVGTAVAVKRKALPKDIIKLSLTRFSRIILPLAPSEALILRGNRFSIRTRPGNITRP 391
Query: 457 EMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVR 516
EMQT+V+SEEI K VD+FYTSV LP+VSK LD ++SPW EWIE L+ TSIPN+QLDEVR
Sbjct: 392 EMQTIVKSEEIKKAVDDFYTSVMLPQVSKLLDPSRSPWDEWIEKLDAHTSIPNDQLDEVR 451
Query: 517 NA 518
A
Sbjct: 452 KA 453
>gi|357491367|ref|XP_003615971.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517306|gb|AES98929.1| Pseudouridylate synthase [Medicago truncatula]
Length = 501
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 291/467 (62%), Positives = 353/467 (75%), Gaps = 26/467 (5%)
Query: 64 TPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRES 123
TP S W+P RKKKV +R+ Y GT+YRGLQMQRD++SLST+E ELE+A+FKAGGIRES
Sbjct: 45 TPQSYS--WQPFRKKKVVMRIAYTGTNYRGLQMQRDQNSLSTVEKELESAIFKAGGIRES 102
Query: 124 NYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
N G+L+KI WARSSRTDKGVHSLATM+ KMEIP ++W +DP+G LA VN++LP +IK
Sbjct: 103 NLGDLEKIGWARSSRTDKGVHSLATMVAFKMEIPENSWNEDPFGFALANYVNSYLPCDIK 162
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
V SILP+QRSFDPR+EC LRKYSYLLPA++IGI S + EID H+S+FN IL EFEG H
Sbjct: 163 VISILPAQRSFDPRKECVLRKYSYLLPADIIGIQSHSSNDEIDYHMSEFNDILKEFEGGH 222
Query: 244 PFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGI 303
PFHNYT RS+YRR H R S + ++ +E EE+ F KV+E+ +
Sbjct: 223 PFHNYTSRSRYRR--HIPRRPSHSKCGEILSAYNSEQEDSDEEENF-KVDEA-------L 272
Query: 304 GGEISSDDEKANQNSMVSGVHQEDCC-----NQHANGLKDQNSSSVIRARWLYETDEADK 358
G I ++K++ S D C + L DQ+SSSV+RA+WLYE DEAD+
Sbjct: 273 TGNIECQNQKSSGTS--------DSCEPVIETGNKGNLHDQSSSSVVRAKWLYEPDEADR 324
Query: 359 LSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL 418
L+ASHFR++F CS GKLEKS+G Y+EI I GESFMLHQIRKMV TAVAVKRKLLPRDI+
Sbjct: 325 LNASHFRRVFRCSSGKLEKSMGHSYIEIYIEGESFMLHQIRKMVATAVAVKRKLLPRDII 384
Query: 419 TLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTS 477
TLSL+K SRI+LPLAPSEVL LR NSFS+RT+PG VTRPEMQT+VESEEI K+VD+FY S
Sbjct: 385 TLSLSKFSRIILPLAPSEVLLLRGNSFSMRTKPGNVTRPEMQTIVESEEINKVVDDFYRS 444
Query: 478 VTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKE 524
V LP+VSKFLD ++ PW EWIE + TSIPN+QLDEVR A LWKE
Sbjct: 445 VMLPQVSKFLDPSRVPWVEWIEKFDAHTSIPNDQLDEVRKARNLWKE 491
>gi|356577897|ref|XP_003557058.1| PREDICTED: putative tRNA pseudouridine synthase-like [Glycine max]
Length = 518
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/470 (59%), Positives = 345/470 (73%), Gaps = 23/470 (4%)
Query: 59 TLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
T + PTP+ +KWEP KKKV +RVGYVGT++RGLQMQRDEH LSTIE ELETA+F AG
Sbjct: 58 TQSLPTPS---EKWEPFLKKKVVMRVGYVGTNFRGLQMQRDEHRLSTIEKELETAIFMAG 114
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
G+R+SN+G+L K+ W RSSRTDKGVHSLAT+I KMEIP +AWK D YGI LA R+N++L
Sbjct: 115 GMRDSNFGDLNKVKWGRSSRTDKGVHSLATIIAFKMEIPENAWKGDDYGIALANRINSYL 174
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNE 238
P I++FSILPS + FDPRRECNLRKYSYLLPA++IGI S + EID HI +FN+ILN
Sbjct: 175 PNTIRIFSILPSTKRFDPRRECNLRKYSYLLPADIIGIQSHFSQDEIDFHILEFNSILNV 234
Query: 239 FEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESE-GEEDGFSKVEESDG 297
FEGEHPFHNYT RSKYR+K R + D + R+ S E D
Sbjct: 235 FEGEHPFHNYTVRSKYRKK------YQVRQSSGNDGMPDRIGSSSLASACESESEESDDD 288
Query: 298 EEDLGIGGEIS--SDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDE 355
++D + G + SD E++++ S +NG QNS+ V+RA+WLYE DE
Sbjct: 289 DDDDFVSGRPTTLSDKEESHKPPESS----------ESNGFSSQNSTVVVRAKWLYEPDE 338
Query: 356 ADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPR 415
D+L+ASHFRK+F CSCGKLE SLG+ YVE+ + G+SFMLHQIRKMVGTAVAVKR L+PR
Sbjct: 339 TDRLNASHFRKVFRCSCGKLETSLGYDYVEVHVWGDSFMLHQIRKMVGTAVAVKRNLIPR 398
Query: 416 DILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEF 474
D + LSL+K SRIV PLAP EVL LR N+F +R G TR EM +MVESE ILK DEF
Sbjct: 399 DAILLSLSKFSRIVFPLAPPEVLILRGNAFKMRASAGNFTRQEMVSMVESEPILKAADEF 458
Query: 475 YTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKE 524
YTSV LPEVSKFLD++ SPW +W+ENL+K++SIP+ +LDEVR AW+ WKE
Sbjct: 459 YTSVVLPEVSKFLDSSSSPWAKWVENLDKYSSIPDVELDEVRKAWKTWKE 508
>gi|355430068|gb|AER92594.1| putative pseudouridine synthase family protein [Linum
usitatissimum]
Length = 565
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 287/487 (58%), Positives = 339/487 (69%), Gaps = 41/487 (8%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
R P++ P L +S KW P+RKKKV LRVGYVGTDYRGLQ Q DEHS
Sbjct: 80 RTPSNFHYWDYPQKGVYLLHQHLGASAGKWVPIRKKKVVLRVGYVGTDYRGLQKQHDEHS 139
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
LST+E ELE A+FKAGGI ESNYG+L K+AWARSSRTDKGVHSLAT I +KMEIP AWK
Sbjct: 140 LSTVEAELENAIFKAGGILESNYGHLNKVAWARSSRTDKGVHSLATTITMKMEIPETAWK 199
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
DDPYGI LA+ VN++LP +I++FSILP+Q++FDPR ECN+RKYSYLLPAE+IGI S A
Sbjct: 200 DDPYGIALARTVNSYLPDSIRIFSILPAQKNFDPRLECNMRKYSYLLPAEIIGIRSHSDA 259
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK------PHKTGRVSKRAKASKDAVF 276
EI HISDF ILN FEG+HPFHNYT RSKYR + P K SKR +A
Sbjct: 260 DEISEHISDFRKILNAFEGDHPFHNYTIRSKYRSQIRRNTFPEKNYHFSKRDRAF----- 314
Query: 277 SRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGL 336
+ IG +S E +++ V + Q D NQ+ +
Sbjct: 315 ------------------------IQIGDPVS---EGSDEEEGVDEIVQLDNSNQNIEPV 347
Query: 337 KDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLH 396
KD SS + ARWL E DE D++ ASHFRKI CSCG+LEKS G+ +VEISI GESFMLH
Sbjct: 348 KDHQSSGQLVARWLXEPDERDRIGASHFRKIIRCSCGELEKSSGYNFVEISIWGESFMLH 407
Query: 397 QIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSV--RTRPGVT 454
QIRKMVGTAVAVKR LLPRDILTLSLAK SRIVLPLAPSEVL LR NS+S+ ++R G T
Sbjct: 408 QIRKMVGTAVAVKRDLLPRDILTLSLAKFSRIVLPLAPSEVLILRGNSYSLTRKSREG-T 466
Query: 455 RPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDE 514
R E+QTM E+EEILK VDEFY LP+VSKFLD + SPW EW+E L++ T IP+ +L+E
Sbjct: 467 RSEVQTMSEAEEILKGVDEFYVDKLLPQVSKFLDPSSSPWLEWVEKLDEHTHIPDAELNE 526
Query: 515 VRNAWQL 521
R A+ L
Sbjct: 527 ERPAFPL 533
>gi|357491363|ref|XP_003615969.1| Pseudouridylate synthase [Medicago truncatula]
gi|355517304|gb|AES98927.1| Pseudouridylate synthase [Medicago truncatula]
Length = 483
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/501 (54%), Positives = 349/501 (69%), Gaps = 43/501 (8%)
Query: 36 LLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQ 95
L P + ++C SSS+ S P+ +KW P KKKV +RVGY+GTD+RGLQ
Sbjct: 25 LPPKTLFKCFCSSSTTDS----------LPSLPPEKWVPYLKKKVVMRVGYIGTDFRGLQ 74
Query: 96 MQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME 155
+QR++H LSTIE ELETA+FK GGIR+SNYG+L KI W RSSRTDKGVHSL+TMI KME
Sbjct: 75 IQRNDHKLSTIEKELETAIFKVGGIRDSNYGDLDKINWGRSSRTDKGVHSLSTMISFKME 134
Query: 156 IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG 215
IP +AWK D YGI++A +N++LP +I+VFS+LPS + FDPR+EC++RKYSYLLPA++IG
Sbjct: 135 IPENAWKGDDYGIEMANHINSYLPNSIRVFSVLPSTKRFDPRKECSMRKYSYLLPADIIG 194
Query: 216 INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAV 275
+ S + E D HIS+FN+IL FEG+HPFHNYT RS YR+K H ++
Sbjct: 195 VQSHFSEDETDFHISEFNSILGAFEGDHPFHNYTVRSVYRKKHHARKSPGNGGMSNMTGS 254
Query: 276 FSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANG 335
S V + E EESD ++ + GE S H+ C++
Sbjct: 255 SSLVSACDSEN------EESDTDDSMSGNGEQS---------------HKSQECSE---- 289
Query: 336 LKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFML 395
S+ ++ARWL+E D AD+L+ASHFRKI CSCGKLE LG+ Y+EI + G+SFML
Sbjct: 290 ------SNSLKARWLHEPDAADRLNASHFRKILRCSCGKLETLLGYNYIEIDVWGDSFML 343
Query: 396 HQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VT 454
HQIRKMVGTAVAVKR +P+DI LSL K SRIVLP+AP EVL LR N+F + + G T
Sbjct: 344 HQIRKMVGTAVAVKRNSIPKDIFLLSLIKFSRIVLPIAPPEVLILRGNAFRMWSSGGSYT 403
Query: 455 RPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDE 514
RPEM +MVESE+ILK VDEFYTSV LPE+SKFLD++KSPW +W+E L+K++SIPN+QL+E
Sbjct: 404 RPEMVSMVESEQILKSVDEFYTSVMLPELSKFLDSSKSPWADWVEKLDKYSSIPNDQLEE 463
Query: 515 VRNAWQLWKEKRFESKTIVES 535
VR AW+ WKE F +K E+
Sbjct: 464 VREAWRTWKEN-FRAKPASEA 483
>gi|449454977|ref|XP_004145230.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 507
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 290/531 (54%), Positives = 363/531 (68%), Gaps = 32/531 (6%)
Query: 1 MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPA-----SSSSKSSPS 55
M++ LRL SPW ++ +S F + + PL PA SSS+ S+ +
Sbjct: 1 MSVSSLRLPLSPWITKASSSCFR---FPDPVFVSRTPPLR----PALLHFFSSSTASTDA 53
Query: 56 VSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF 115
S TR P+ KW+ RKKKV LR+GYVGTDYRGLQMQR++ S TIE ELE A++
Sbjct: 54 FS---TRCAPDQLR-KWQAFRKKKVVLRIGYVGTDYRGLQMQRNQLSHPTIEQELEDAIY 109
Query: 116 KAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
KAGGI +SNYGNL KI+WARSSRTDKGVHSLAT I LKMEIP AW DDP GI LA +N
Sbjct: 110 KAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDPCGISLADYIN 169
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
++LP NIKVF I+P+Q+ FDPR+EC++R YSYLLPA++IGI S+L EID HISDF I
Sbjct: 170 SYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEIDCHISDFKDI 229
Query: 236 LNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
L FEG+HPFHNYT RS YR + RAK A+ S + S G+ S+ E S
Sbjct: 230 LKSFEGDHPFHNYTVRSIYRTR--------IRAKQLVYALKSGKKVSPGDMSN-SEFEGS 280
Query: 296 DGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDE 355
D E D + G I D+++ S+ + + C++ +G + +RARWL+E DE
Sbjct: 281 DQENDTFVEG-IKEPDQRSPSLSVCENLTE--VCSKLEDGSELLKG---VRARWLHEPDE 334
Query: 356 ADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPR 415
D++ ASHFR+I CSCGKLE G ++EISI GESFMLHQIRKM+ TAVAVKRKLLPR
Sbjct: 335 KDRIGASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATAVAVKRKLLPR 394
Query: 416 DILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQTMVESEEILKMVDEF 474
DI+TLSL K SRIVLP+AP+EVL LR NSFS R RPG R E+ T+ ES++I+ V+EF
Sbjct: 395 DIITLSLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNESDDIVNSVNEF 454
Query: 475 YTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEK 525
Y S LPEV+KFLD PW EW+E L+K+TSIPNE+LDEVR+AW+ WK +
Sbjct: 455 YRSAILPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWKYR 505
>gi|297826435|ref|XP_002881100.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326939|gb|EFH57359.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/455 (58%), Positives = 327/455 (71%), Gaps = 31/455 (6%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DKWE RKKKV +R+GYVGTDYRGLQ+QRD+ SL TIEGELE A++KAGGIR+SNYG+L
Sbjct: 55 DKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLH 114
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
KI WARSSRTDKGVHSLAT I LKMEIP AWKDDP G LAK ++ HLP NI+VFS+LP
Sbjct: 115 KIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLP 174
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
S R FDPRREC LRKYSYLLP +VIGI + T+ EID HI+DFN ILNEFEGE+PFHNYT
Sbjct: 175 SNRRFDPRRECTLRKYSYLLPVDVIGIKNSFTSDEIDYHITDFNKILNEFEGEYPFHNYT 234
Query: 250 ERSKYRRKPHKTGRVSKRAKASKDAVFSRVEES-EGEEDGFSKVEESDGEEDLGIGGEIS 308
+RS+YRRK S++ ++ R+ +S + E F++ + EE+ +
Sbjct: 235 QRSRYRRK-------SEQKIKQRNGRPPRIPKSIKASESEFTEENHREIEEEEEKEMDGE 287
Query: 309 SDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIF 368
SD+ D N N RA+WLYE DE DKLS +HFRK+F
Sbjct: 288 SDEHVP-----------PDSDNSQVNS----------RAKWLYEPDETDKLSGAHFRKVF 326
Query: 369 SCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRI 428
C GKLE SLGFG+VEISI GESFMLHQIRKM+GTAVAVKR+LLPRDI+ LSL K +RI
Sbjct: 327 RCRSGKLENSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNKFTRI 386
Query: 429 VLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLD 488
VLPLAPSEVL LR NSF VR P RP M+ ESEE+ K ++EFY +V +P+VS+FLD
Sbjct: 387 VLPLAPSEVLILRGNSFEVRRLP--ERPGMEATGESEEVEKDIEEFYRAVMVPQVSRFLD 444
Query: 489 ATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
+ KSPW EW+E+L++ + +E+L++VR W+ WK
Sbjct: 445 SEKSPWKEWVEHLDRNDGLIDEELEDVRKGWEEWK 479
>gi|194697948|gb|ACF83058.1| unknown [Zea mays]
gi|414866704|tpg|DAA45261.1| TPA: hypothetical protein ZEAMMB73_241728 [Zea mays]
Length = 516
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/485 (54%), Positives = 334/485 (68%), Gaps = 19/485 (3%)
Query: 41 CYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDE 100
CY AS+ K +PS+S +T +WE RKK+V LR+GYVGTDYRGLQ Q++
Sbjct: 40 CYSSSASARLKPTPSLSPPVTSANDGGGGMRWESARKKRVVLRIGYVGTDYRGLQKQQEL 99
Query: 101 HSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDA 160
STIE LE+A+FK+GGI ESNYG LQKI W RSSRTDKGVHSLATMI LKMEIP A
Sbjct: 100 GVDSTIESVLESAIFKSGGILESNYGKLQKIGWERSSRTDKGVHSLATMISLKMEIPDRA 159
Query: 161 WKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
W+DDP GI LA +N++LP N++VFSILP+QRSFD RREC R+Y YLLPAE+IGI
Sbjct: 160 WEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLLPAEIIGIKDDY 219
Query: 221 TAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ E+ H+S+FN IL FEG HPFHNYT R+KYR+ GR +RAK + A+ S
Sbjct: 220 SSEEMQEHLSEFNKILKGFEGNHPFHNYTARAKYRKV--LAGR-HRRAKGASSALKSMSS 276
Query: 281 ESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQN 340
++ E + D +EDL I S D +++ V+G+ LK
Sbjct: 277 DTGMAESSSEESTSPDHDEDLNIS---SIFDSGIPEDTRVNGI------------LKLSE 321
Query: 341 SSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRK 400
I+ARWL+E DE+D+L+ASHFR I +CSCG L+ S G +VE++I G SFMLHQIRK
Sbjct: 322 DRLQIQARWLHEPDESDRLNASHFRDIITCSCGDLQTSSGIQFVELTICGVSFMLHQIRK 381
Query: 401 MVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQ 459
MVGTAV VKR LLPRDI+ LSLAK SRIVLP+APSEVL L+ NSF +++ G + RP +Q
Sbjct: 382 MVGTAVTVKRGLLPRDIIELSLAKFSRIVLPIAPSEVLVLKDNSFCTKSKGGRIVRPGIQ 441
Query: 460 TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAW 519
+M +SE K V+EFY + LPEV+KFLD + PW EW+ENL++F+ IP QLDEVR A+
Sbjct: 442 SMNKSEATRKGVEEFYRAALLPEVAKFLDPSLPPWKEWLENLDRFSGIPGSQLDEVREAY 501
Query: 520 QLWKE 524
+ W++
Sbjct: 502 RAWRD 506
>gi|357119878|ref|XP_003561660.1| PREDICTED: putative tRNA pseudouridine synthase-like [Brachypodium
distachyon]
Length = 522
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/467 (54%), Positives = 335/467 (71%), Gaps = 18/467 (3%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
+WE RKK+V LRVGYVG++YRGLQ QR+ + STIE LE+A+FKAGGI ESNYG LQK
Sbjct: 70 RWESTRKKRVVLRVGYVGSEYRGLQKQRELSADSTIESVLESAIFKAGGILESNYGKLQK 129
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+ W RSSRTDKGVHSLATMI LKMEIP AW++DP GI LA +N++LP NIKVFSILP+
Sbjct: 130 VGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALANFINSNLPNNIKVFSILPA 189
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
QRSFD RREC R+Y YLLPAE+IGI S ++ E++ H+ +FN+IL FEG HPFHNYT
Sbjct: 190 QRSFDVRRECLYREYFYLLPAEIIGIKSGCSSEEVEEHLIEFNSILKGFEGNHPFHNYTA 249
Query: 251 RSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSD 310
R+KYR+ R SK ++ +++ S + V++S ++ G +D
Sbjct: 250 RAKYRKVLAGAHRRSKETSSTINSIPSEL-----------AVDQSPNDD----GATSDAD 294
Query: 311 DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSC 370
DE N +S+V E+ N+ + K + I+ARWL+E +E D+LSASHFR I +C
Sbjct: 295 DEHLNFSSVVDSSLPENDWNK--DNPKHHENHVQIQARWLHEPNENDRLSASHFRDIITC 352
Query: 371 SCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVL 430
SCG+L+ S G +VE++I G SFMLHQIRKMVGTAVAVKR LLP++I+ LSLAK SRIVL
Sbjct: 353 SCGELQSSSGIQFVELTICGVSFMLHQIRKMVGTAVAVKRGLLPKEIIELSLAKFSRIVL 412
Query: 431 PLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDA 489
P+APSEVL LR NSF R + G + RP +Q++ ES+E+ K V EFY + +PE++K+LDA
Sbjct: 413 PIAPSEVLILRDNSFCTRNKQGSIVRPGIQSINESKEVKKGVMEFYKAALVPELAKYLDA 472
Query: 490 TKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESKTIVESA 536
++ PW EW+ENL+ FTSIP+ QLDEVR A+ W+E +KT +S+
Sbjct: 473 SEPPWEEWVENLDHFTSIPDSQLDEVRTAYTAWREDYIRAKTARKSS 519
>gi|15227735|ref|NP_180591.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
gi|3914486|sp|O22928.1|PUSH_ARATH RecName: Full=Putative tRNA pseudouridine synthase; AltName:
Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|2347206|gb|AAC16945.1| putative pseudouridine synthase [Arabidopsis thaliana]
gi|330253276|gb|AEC08370.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 510
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 264/459 (57%), Positives = 321/459 (69%), Gaps = 37/459 (8%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DKWE RKKKV +R+GYVGTDYRGLQ+QRD+ S+ TIEGELE A++KAGGIR+SNYG+L
Sbjct: 55 DKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLH 114
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
KI WARSSRTDKGVHSLAT I LKMEIP AWKDDP G LAK ++ HLP NI+VFS+LP
Sbjct: 115 KIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLP 174
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
S R FDPRREC LRKYSYLLP +V+GI + T+ EID HI+DFN IL EFEGE+PFHNYT
Sbjct: 175 SNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEGEYPFHNYT 234
Query: 250 ERSKYRRK-----PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIG 304
+RS+YRRK + GR + K+ ++ SE E F + + E+
Sbjct: 235 QRSRYRRKSEQKIKQRNGRPPREPKS--------IKASESE---FREENHIEIGEEEEEK 283
Query: 305 GEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHF 364
DE H NS RA+WLYE DE DK+S +HF
Sbjct: 284 EVDGESDE-------------------HVVTPDSDNSQVYSRAKWLYEPDETDKISGAHF 324
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
RK+F C GKLE SLGFG+VEISI GESFMLHQIRKM+GTAVAVKR+LLPRDI+ LSL K
Sbjct: 325 RKVFRCRSGKLENSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNK 384
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
+RIVLPLAPSEVL LR NSF VR P RP M+ ESEE+ K ++EFY +V +P+VS
Sbjct: 385 FTRIVLPLAPSEVLILRGNSFEVRRLP--ERPGMEATGESEEVEKEIEEFYRAVMVPQVS 442
Query: 485 KFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
FLD+ KSPW EW+++L++ + +E+L++VR W+ WK
Sbjct: 443 IFLDSEKSPWKEWVDHLDRNDGLIDEELEDVRKGWEEWK 481
>gi|242040995|ref|XP_002467892.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
gi|241921746|gb|EER94890.1| hypothetical protein SORBIDRAFT_01g035980 [Sorghum bicolor]
Length = 520
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 269/497 (54%), Positives = 335/497 (67%), Gaps = 25/497 (5%)
Query: 44 CPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSL 103
CP K +PS+S T +WE RKK+V LR+GY+GT+YRGLQ QR+
Sbjct: 48 CP-----KPAPSLSPPDTSANDGGGGMRWESARKKRVVLRIGYIGTEYRGLQKQRELGVD 102
Query: 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD 163
STIE LE+A+FK+GGI ESNYG LQK+ W RSSRTDKGVHSLATMI LKMEIP AW+D
Sbjct: 103 STIESVLESAIFKSGGILESNYGKLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWED 162
Query: 164 DPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAA 223
DP GI LA +N++LP N++VFSILP+QRSFD RREC R+Y YLLPAEVIGI +
Sbjct: 163 DPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYLLPAEVIGIKDGYSPE 222
Query: 224 EIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESE 283
EI H+S+FN+IL FEG HPFHNYT R+KYR+ GR RAK + + S E
Sbjct: 223 EIQEHLSEFNSILKGFEGNHPFHNYTARAKYRKV--LAGR-HPRAKGASLTLKSMSSEMG 279
Query: 284 GEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSS 343
E + SD +EDL ISS D A++N V+ + LK S
Sbjct: 280 MAESSSLESTSSDDDEDL----NISSIDSGASENIFVNDI------------LKFSESRV 323
Query: 344 VIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVG 403
I+ARWL+E DE+D+L+ASHFR I +CSCG+L+ S G +VE++I G SFMLHQIRKMVG
Sbjct: 324 QIQARWLHEPDESDRLNASHFRDIITCSCGELQTSSGIQFVELTICGVSFMLHQIRKMVG 383
Query: 404 TAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMV 462
TAVAVKR LLP+DI+ LSLAK SRIVLP+APSEVL L+ NSF +++ G + RP +Q+M
Sbjct: 384 TAVAVKRGLLPKDIIELSLAKFSRIVLPIAPSEVLILKDNSFCTKSKEGRIVRPGIQSMN 443
Query: 463 ESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLW 522
+S I K V+EFY + LPEV+KFLD PW EW+ENL++F I + QLDEVR A++ W
Sbjct: 444 KSAAIRKGVEEFYKAALLPEVAKFLDPAVPPWKEWVENLDRFAGISDSQLDEVREAYRAW 503
Query: 523 KEKRFESKTIVESAISV 539
K K +SA SV
Sbjct: 504 KADYDRVKMARKSASSV 520
>gi|125586190|gb|EAZ26854.1| hypothetical protein OsJ_10771 [Oryza sativa Japonica Group]
Length = 516
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/454 (55%), Positives = 327/454 (72%), Gaps = 19/454 (4%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
+WE RKK+V LRVGYVGT+YRGLQ QR+ + STIE LETA+FKAGGI ESNYG LQK
Sbjct: 65 RWESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQK 124
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+ W RSSRTDKGVHSLATMI LKMEIP AW++DP GI L+ +N++LP N++VFS+LP+
Sbjct: 125 VGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPA 184
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
QRSFD RREC R+Y YLLPAE+IGI ++ E+ H+S+FN+IL FEG HPFHNYT
Sbjct: 185 QRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTA 244
Query: 251 RSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSD 310
R+KYR+ GR ++ K + AV S E +++S ++ G D
Sbjct: 245 RAKYRKV--LAGR-HRKVKGASSAVNSMPTE--------MSLDQSSSDD----GTTSDHD 289
Query: 311 DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSC 370
+E N +S++ ED + + Q IRARWL+E DE D+L+ASHFR I +
Sbjct: 290 EEDLNSSSIIGSSVPEDSYKDNPEFSEKQVQ---IRARWLHEPDENDRLNASHFRDILTF 346
Query: 371 SCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVL 430
SCG+L+ S G +VE++ISG SFMLHQIRKMVGT+VAVKR LLP+DI+ LSLAK SRIVL
Sbjct: 347 SCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL 406
Query: 431 PLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDA 489
P+APSEVL LR NSF +R + G + RP +Q+M ESEE+ K V EFY + +PE++ FLDA
Sbjct: 407 PIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNESEEVKKGVMEFYRAALVPELANFLDA 466
Query: 490 TKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
+ PW EW+ENL++FTSIP+ QL+EVR+A+++WK
Sbjct: 467 SMPPWKEWVENLDRFTSIPDPQLEEVRSAYRVWK 500
>gi|115452911|ref|NP_001050056.1| Os03g0338600 [Oryza sativa Japonica Group]
gi|108708043|gb|ABF95838.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548527|dbj|BAF11970.1| Os03g0338600 [Oryza sativa Japonica Group]
Length = 516
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/454 (55%), Positives = 327/454 (72%), Gaps = 19/454 (4%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
+WE RKK+V LRVGYVGT+YRGLQ QR+ + STIE LETA+FKAGGI ESNYG LQK
Sbjct: 65 RWESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQK 124
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+ W RSSRTDKGVHSLATMI LKMEIP AW++DP GI L+ +N++LP N++VFS+LP+
Sbjct: 125 VGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPA 184
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
QRSFD RREC R+Y YLLPAE+IGI ++ E+ H+S+FN+IL FEG HPFHNYT
Sbjct: 185 QRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTA 244
Query: 251 RSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSD 310
R+KYR+ GR ++ K + AV S E +++S ++ G D
Sbjct: 245 RAKYRKV--LAGR-HRKVKGASSAVNSMPTE--------MSLDQSSSDD----GTTSDHD 289
Query: 311 DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSC 370
+E N +S++ ED + + Q IRARWL+E DE D+L+ASHFR I +
Sbjct: 290 EEDLNSSSIIGSSVPEDSYKDNPEFSEKQVQ---IRARWLHEPDENDRLNASHFRDILTF 346
Query: 371 SCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVL 430
SCG+L+ S G +VE++ISG SFMLHQIRKMVGT+VAVKR LLP+DI+ LSLAK SRIVL
Sbjct: 347 SCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVL 406
Query: 431 PLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDA 489
P+APSEVL LR NSF +R + G + RP +Q+M ESEE+ K V EFY + +PE++ FLDA
Sbjct: 407 PIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNESEEVKKGVMEFYRAALVPELANFLDA 466
Query: 490 TKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
+ PW EW+ENL++FTSIP+ QL+EVR+A+++WK
Sbjct: 467 SMPPWKEWVENLDRFTSIPDPQLEEVRSAYRVWK 500
>gi|449472493|ref|XP_004153611.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 464
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/419 (58%), Positives = 301/419 (71%), Gaps = 16/419 (3%)
Query: 106 IEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDP 165
IE ELE A++KAGGI +SNYGNL KI+WARSSRTDKGVHSLAT I LKMEIP AW DDP
Sbjct: 57 IEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDDP 116
Query: 166 YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI 225
GI LA +N++LP NIKVF I+P+Q+ FDPR+EC++R YSYLLPA++IGI S+L EI
Sbjct: 117 CGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTEI 176
Query: 226 DSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGE 285
D HISDF IL FEG+HPFHNYT RS YR + RAK A+ S + S G+
Sbjct: 177 DCHISDFKDILKSFEGDHPFHNYTVRSIYRTR--------IRAKQLVYALKSGKKVSPGD 228
Query: 286 EDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVI 345
S+ E SD E D + G I D+++ S+ + + C++ +G + +
Sbjct: 229 MSN-SEFEGSDQENDTFVEG-IKEPDQRSPSLSVCENLTE--VCSKLEDGSELLKG---V 281
Query: 346 RARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTA 405
RARWL+E DE D++ ASHFR+I CSCGKLE G ++EISI GESFMLHQIRKM+ TA
Sbjct: 282 RARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIATA 341
Query: 406 VAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQTMVES 464
VAVKRKLLPRDI+TLSL K SRIVLP+AP+EVL LR NSFS R RPG R E+ T+ ES
Sbjct: 342 VAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNES 401
Query: 465 EEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
++I+ V+EFY S LPEV+KFLD PW EW+E L+K+TSIPNE+LDEVR+AW+ WK
Sbjct: 402 DDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWK 460
>gi|449529415|ref|XP_004171695.1| PREDICTED: putative tRNA pseudouridine synthase-like [Cucumis
sativus]
Length = 421
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/420 (58%), Positives = 301/420 (71%), Gaps = 16/420 (3%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
IE ELE A++KAGGI +SNYGNL KI+WARSSRTDKGVHSLAT I LKMEIP AW DD
Sbjct: 13 AIEQELEDAIYKAGGICDSNYGNLNKISWARSSRTDKGVHSLATTITLKMEIPGSAWIDD 72
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE 224
P GI LA +N++LP NIKVF I+P+Q+ FDPR+EC++R YSYLLPA++IGI S+L E
Sbjct: 73 PCGISLADYINSYLPDNIKVFGIVPAQKRFDPRKECDVRMYSYLLPAKLIGIESKLKTTE 132
Query: 225 IDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEG 284
ID HISDF IL FEG+HPFHNYT RS YR + RAK A+ S + S G
Sbjct: 133 IDCHISDFKDILKSFEGDHPFHNYTVRSIYRTR--------IRAKQLVYALKSGKKVSPG 184
Query: 285 EEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSV 344
+ S+ E SD E D + G I D+++ S+ + + C++ +G +
Sbjct: 185 DMSN-SEFEGSDQENDTFVEG-IKEPDQRSPSLSVCENLTE--VCSKLEDGSELLKG--- 237
Query: 345 IRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGT 404
+RARWL+E DE D++ ASHFR+I CSCGKLE G ++EISI GESFMLHQIRKM+ T
Sbjct: 238 VRARWLHEPDEKDRIGASHFRRILYCSCGKLETYFGCDFIEISIWGESFMLHQIRKMIAT 297
Query: 405 AVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQTMVE 463
AVAVKRKLLPRDI+TLSL K SRIVLP+AP+EVL LR NSFS R RPG R E+ T+ E
Sbjct: 298 AVAVKRKLLPRDIITLSLTKFSRIVLPIAPAEVLVLRGNSFSNRKRPGAPMRSELFTLNE 357
Query: 464 SEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
S++I+ V+EFY S LPEV+KFLD PW EW+E L+K+TSIPNE+LDEVR+AW+ WK
Sbjct: 358 SDDIVNSVNEFYRSAILPEVTKFLDTESPPWKEWVEKLDKYTSIPNEELDEVRSAWKAWK 417
>gi|255553385|ref|XP_002517734.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223543132|gb|EEF44666.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 377
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/365 (61%), Positives = 263/365 (72%), Gaps = 28/365 (7%)
Query: 45 PASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLS 104
P S SS S +H L++ KWEP RKKKV LRVGYVGTDYRGLQ Q DEHSLS
Sbjct: 29 PILPSRLSSQSHAHILSQ--------KWEPFRKKKVVLRVGYVGTDYRGLQKQEDEHSLS 80
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIE ELE A+FKAGGI +SNYGNL KIAWARSSRTDKGVHSLATMI +KMEIP +AWK+D
Sbjct: 81 TIEAELECAIFKAGGILDSNYGNLHKIAWARSSRTDKGVHSLATMISMKMEIPENAWKED 140
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE 224
P GI LA+ VN +LP NI++FSILPSQ+SFDPRRECNLRKYSYLLPAE+IGI T+AE
Sbjct: 141 PNGIALAECVNYYLPDNIRIFSILPSQKSFDPRRECNLRKYSYLLPAEIIGIKGHFTSAE 200
Query: 225 IDSHISDFNAILNEFEGEHPFHNYTERSKYRRK--PHKTGRVSKRAKASKDAVFSRVEES 282
ID+HISDFN ILN FEGEHPFHNYT RSKYR++ TGRV KRA++S + S E+S
Sbjct: 201 IDNHISDFNDILNAFEGEHPFHNYTIRSKYRKQYPTAITGRVPKRARSSSERSTSESEKS 260
Query: 283 EGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSS 342
+GEED +++E + E+ G I S + N GV L+ Q +
Sbjct: 261 DGEED--YEIDEINIEDH---NGSIQSSSKFRFSNQQKGGV------------LEQQQYN 303
Query: 343 SVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQ-IRKM 401
+ I ARWLYE DE D++ ASHFRKIF CSCGKLE S GF +VEISI GESFMLHQ + M
Sbjct: 304 AGILARWLYEPDETDRIGASHFRKIFRCSCGKLETSKGFDFVEISIWGESFMLHQPLLVM 363
Query: 402 VGTAV 406
V A+
Sbjct: 364 VQVAI 368
>gi|108708044|gb|ABF95839.1| tRNA pseudouridine synthase family protein, expressed [Oryza sativa
Japonica Group]
Length = 374
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/376 (51%), Positives = 262/376 (69%), Gaps = 19/376 (5%)
Query: 149 MICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYL 208
MI LKMEIP AW++DP GI L+ +N++LP N++VFS+LP+QRSFD RREC R+Y YL
Sbjct: 1 MISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPAQRSFDVRRECLYREYLYL 60
Query: 209 LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRA 268
LPAE+IGI ++ E+ H+S+FN+IL FEG HPFHNYT R+KYR+ GR ++
Sbjct: 61 LPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFHNYTARAKYRKV--LAGR-HRKV 117
Query: 269 KASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDC 328
K + AV S E +++S ++ G D+E N +S++ ED
Sbjct: 118 KGASSAVNSMPTEM--------SLDQSSSDD----GTTSDHDEEDLNSSSIIGSSVPEDS 165
Query: 329 CNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISI 388
+ + Q IRARWL+E DE D+L+ASHFR I + SCG+L+ S G +VE++I
Sbjct: 166 YKDNPEFSEKQVQ---IRARWLHEPDENDRLNASHFRDILTFSCGELQISSGIQFVELTI 222
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVR 448
SG SFMLHQIRKMVGT+VAVKR LLP+DI+ LSLAK SRIVLP+APSEVL LR NSF +R
Sbjct: 223 SGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVLPIAPSEVLVLRDNSFCLR 282
Query: 449 TRPG-VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSI 507
+ G + RP +Q+M ESEE+ K V EFY + +PE++ FLDA+ PW EW+ENL++FTSI
Sbjct: 283 NKQGTIVRPGIQSMNESEEVKKGVMEFYRAALVPELANFLDASMPPWKEWVENLDRFTSI 342
Query: 508 PNEQLDEVRNAWQLWK 523
P+ QL+EVR+A+++WK
Sbjct: 343 PDPQLEEVRSAYRVWK 358
>gi|212721194|ref|NP_001132024.1| uncharacterized protein LOC100193430 [Zea mays]
gi|194693226|gb|ACF80697.1| unknown [Zea mays]
gi|414866705|tpg|DAA45262.1| TPA: hypothetical protein ZEAMMB73_241728 [Zea mays]
Length = 369
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/377 (52%), Positives = 257/377 (68%), Gaps = 19/377 (5%)
Query: 149 MICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYL 208
MI LKMEIP AW+DDP GI LA +N++LP N++VFSILP+QRSFD RREC R+Y YL
Sbjct: 1 MISLKMEIPDRAWEDDPDGIALASFINSNLPDNVRVFSILPAQRSFDVRRECLYREYFYL 60
Query: 209 LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRA 268
LPAE+IGI ++ E+ H+S+FN IL FEG HPFHNYT R+KYR+ GR +RA
Sbjct: 61 LPAEIIGIKDDYSSEEMQEHLSEFNKILKGFEGNHPFHNYTARAKYRKV--LAGR-HRRA 117
Query: 269 KASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDC 328
K + A+ S ++ E + D +EDL I S D +++ V+G+
Sbjct: 118 KGASSALKSMSSDTGMAESSSEESTSPDHDEDLNIS---SIFDSGIPEDTRVNGI----- 169
Query: 329 CNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISI 388
LK I+ARWL+E DE+D+L+ASHFR I +CSCG L+ S G +VE++I
Sbjct: 170 -------LKLSEDRLQIQARWLHEPDESDRLNASHFRDIITCSCGDLQTSSGIQFVELTI 222
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVR 448
G SFMLHQIRKMVGTAV VKR LLPRDI+ LSLAK SRIVLP+APSEVL L+ NSF +
Sbjct: 223 CGVSFMLHQIRKMVGTAVTVKRGLLPRDIIELSLAKFSRIVLPIAPSEVLVLKDNSFCTK 282
Query: 449 TRPG-VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSI 507
++ G + RP +Q+M +SE K V+EFY + LPEV+KFLD + PW EW+ENL++F+ I
Sbjct: 283 SKGGRIVRPGIQSMNKSEATRKGVEEFYRAALLPEVAKFLDPSLPPWKEWLENLDRFSGI 342
Query: 508 PNEQLDEVRNAWQLWKE 524
P QLDEVR A++ W++
Sbjct: 343 PGSQLDEVREAYRAWRD 359
>gi|168042339|ref|XP_001773646.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675034|gb|EDQ61534.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 191/450 (42%), Positives = 264/450 (58%), Gaps = 33/450 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GYVGT Y+GLQ+QR S TIE ELE A+FKAGG+ ESN+GNL KI+W RS
Sbjct: 1 KKKVAMWLGYVGTRYKGLQIQRGPGSAQTIEEELELAIFKAGGMIESNFGNLSKISWTRS 60
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVHSL T+I +KME+P AW +D G LA +N HL I+VF I P RSF
Sbjct: 61 SRTDKGVHSLCTVISMKMEVPEAAWVNDMDGFALADNINFHLSPFIRVFGITPVTRSFRA 120
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR 256
R +C R Y YLLPA ++GI+ ++++ ++ F ++L+ FEG+H +HNYT R YR
Sbjct: 121 RHDCCTRTYDYLLPAAILGIHPDTVPSQVEQRVTKFRSLLHLFEGKHAYHNYTIRRLYRP 180
Query: 257 KPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVE-ESDGEEDLGIGGEISSDDEKAN 315
P K + + D R ++ S +E + EED+
Sbjct: 181 FPEKPYKSRLNDRNDNDTSNERTDKPSTTT---SSIELDFLDEEDI-------------- 223
Query: 316 QNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKL 375
E+ ++ L N + ++A WL +E+DK+ +SHFRK+ S +CG
Sbjct: 224 ---------MEELPDRSTFTLPGGNVTD-LKAWWLPTPNESDKVWSSHFRKVISFNCGMP 273
Query: 376 EKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPS 435
E ++ ISI+G SFM+HQIRKM+GTA+AV LLP D++ +SLA+HSRIVLPLAP
Sbjct: 274 ETFGEAQFIRISITGSSFMVHQIRKMIGTAIAVFHGLLPGDVIPISLARHSRIVLPLAPP 333
Query: 436 EVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWT 495
+ L L +N F P + EM + V VDEF +V +P++S + A S W+
Sbjct: 334 DGLILVSNDFMPFRLPSHPKLEMSSAVRER-----VDEFCANVLMPDISPLISAKSSNWS 388
Query: 496 EWIENLEKFTSIPNEQLDEVRNAWQLWKEK 525
WI NLE+ IP ++ EVR AW W+E+
Sbjct: 389 IWIMNLERNVKIPESEIAEVRAAWTEWREQ 418
>gi|302781376|ref|XP_002972462.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
gi|300159929|gb|EFJ26548.1| hypothetical protein SELMODRAFT_97541 [Selaginella moellendorffii]
Length = 428
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 166/457 (36%), Positives = 238/457 (52%), Gaps = 51/457 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK VA+ VGYVGTDY+GLQ+QR + ++E ELE A++KAGGI E NY +L K+ W RS
Sbjct: 1 KKNVAIWVGYVGTDYKGLQIQRGVAGIHSVENELEEAIYKAGGISEENYRHLDKVRWKRS 60
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVHSL T++ +K+E+ ++W +D GI +A NA+LP NI +F ++P +SFD
Sbjct: 61 SRTDKGVHSLCTVVTMKLEVAVNSWLNDVDGIKIADAFNAYLPANISIFGVVPVTKSFDA 120
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR 256
RR C R Y Y PA IGIN++ ++ ++D I DF L EG H FHNYT R YR+
Sbjct: 121 RRSCYSRTYDYYFPAACIGINNESSSEDVDQRIQDFRRTLKSLEGRHAFHNYTVRRLYRK 180
Query: 257 KPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQ 316
+ R + + E S + +D E+ G G DE
Sbjct: 181 SQRRGTYSPSRNLIADEESSEDEEPSFKDTHDEQDNPAADIGEERGAGRRAYWLDESEEG 240
Query: 317 NSMVSGVHQEDCCNQHANGLKDQNS-SSVIRARWLYETDEADKLSASHFRKIFSCSCGKL 375
V H + G + N SSV+R R
Sbjct: 241 KDPVKASHFRNVAKCTCEGPEKLNCPSSVVRIR--------------------------- 273
Query: 376 EKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPS 435
++GESFM+HQIRKMVGTA+AV R +LP D + +S +H+R+VLPLAP
Sbjct: 274 ------------VTGESFMVHQIRKMVGTAIAVFRHVLPEDAIPVSTCRHARVVLPLAPP 321
Query: 436 EVLFLRANSFSVRTRPGVTRPEMQT---------MVESEEILKMVDEFYTSVTLPEVSKF 486
L L NSF R G TR + T + S +I + ++ F+ P +S
Sbjct: 322 HGLVLSGNSF-FPFRGGYTRAKGGTGGYFFSKLGIQVSSQIAERMNSFWLEKLAPVISSS 380
Query: 487 LDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
++ ++PW++W+E+LE I + + +R+AW+ W+
Sbjct: 381 MNEEEAPWSQWLESLE-LNRIDDLEFANLRDAWKQWQ 416
>gi|218192790|gb|EEC75217.1| hypothetical protein OsI_11484 [Oryza sativa Indica Group]
Length = 722
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 142/284 (50%), Positives = 191/284 (67%), Gaps = 19/284 (6%)
Query: 241 GEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEED 300
G HPFHNYT R+KYR+ GR ++ K + AV S E +++S ++
Sbjct: 441 GNHPFHNYTARAKYRKV--LAGR-HRKVKGASSAVNSMPTEM--------SLDQSSSDD- 488
Query: 301 LGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLS 360
G D+E N +S++ ED + + Q IRARWL+E DE D+L+
Sbjct: 489 ---GTTSDHDEEDLNSSSIIGSSVPEDSYKDNPEFSEKQVQ---IRARWLHEPDENDRLN 542
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
ASHFR I + SCG+L+ S G +VE++ISG SFMLHQIRKMVGT+VAVKR LLP+DI+ L
Sbjct: 543 ASHFRDILTFSCGELQISSGIQFVELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIAL 602
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSFSVRTRPG-VTRPEMQTMVESEEILKMVDEFYTSVT 479
SLAK SRIVLP+APSEVL LR NSF +R + G + RP +Q+M ESEE+ K V EFY +
Sbjct: 603 SLAKFSRIVLPIAPSEVLVLRDNSFCLRNKQGTIVRPGIQSMNESEEVKKGVMEFYRAAL 662
Query: 480 LPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
+PE++ FLDA+ PW EW+ENL++FTSIP+ QL+EVR+A+++WK
Sbjct: 663 VPELANFLDASMPPWKEWVENLDRFTSIPDPQLEEVRSAYRVWK 706
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 136/171 (79%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
+WE RKK+V LRVGYVGT+YRGLQ QR+ + STIE LETA+FKAGGI ESNYG LQK
Sbjct: 65 RWESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYGKLQK 124
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+ W RSSRTDKGVHSLATMI LKMEIP AW++DP GI L+ +N++LP N++VFS+LP+
Sbjct: 125 VGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFSVLPA 184
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEG 241
QRSFD RREC R+Y YLLPAE+IGI ++ E+ H+S+FN+IL FE
Sbjct: 185 QRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEA 235
>gi|145354770|ref|XP_001421649.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581887|gb|ABO99942.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 556
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 154/494 (31%), Positives = 250/494 (50%), Gaps = 37/494 (7%)
Query: 54 PSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETA 113
PS T P + D + +KK VA+ + YVG Y+G +T++ +E A
Sbjct: 65 PSAHPTHLIPDDLRAPDVDDARKKKPVAIVLAYVGQGYKGNTHNAQAPRGTTVDDVVEDA 124
Query: 114 LFKAGGIRESNYGN--LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
LF GGI NY + LQ++ W+RSSRTDKGV SL T++ L+ EI P+ W D + A
Sbjct: 125 LFAWGGILMPNYRSRGLQRLKWSRSSRTDKGVSSLCTVVSLRAEIDPEVWTKDVEARETA 184
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD 231
+ + HLP +++ F++ + +SF RREC +R Y YLLPA V+ + + A +
Sbjct: 185 REITKHLPEDVECFAVYNTPKSFQARRECIMRTYEYLLPARVLDLERGVLDASDAERLEL 244
Query: 232 FNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSK 291
F+ L F G HPFHNYT+R +Y R+ G+ S + + ++ + + +E +DG
Sbjct: 245 FSKALAAFVGAHPFHNYTKRKQYTRE--AIGKYSAKRRDARGKLAWKGQEGAVMDDG--- 299
Query: 292 VEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLY 351
D + GE +DE+ N + S +D +H G + + + WLY
Sbjct: 300 -------SDEDVEGEHGEEDEEENVVASTSAAEHDDGFPKHV-GERRRGTY------WLY 345
Query: 352 ETDEADKLSASHFRKIFSCSCG----KLE-------KSLGFGYVEISISGESFMLHQIRK 400
E+D DK+ SHFR+I + + G ++E K+ ++ +S+ GESFML+QIRK
Sbjct: 346 ESDPNDKIGPSHFRRIHNFTAGADVERMEITNDDGSKTTSEPFIRVSVRGESFMLYQIRK 405
Query: 401 MVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF-SVRTRPGVTRP-EM 458
M+ +AVAV P + L SL++ R +PLAP+ L+L F R ++P +
Sbjct: 406 MIASAVAVSLGHCPLEFLPASLSRPCRAAMPLAPASTLYLYDVEFMKFRVNHDPSQPNRL 465
Query: 459 QTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNA 518
+ + SE + + F P ++ L W ++ ENL++ P D + A
Sbjct: 466 ERLEPSESVRADLARFQREKLEPALAPAL--LNDEWDDFKENLKQGNVTPELSRD-ILAA 522
Query: 519 WQLWKEKRFESKTI 532
++ +K R E++ +
Sbjct: 523 YETYKANRDEARAL 536
>gi|308812814|ref|XP_003083714.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
gi|116055595|emb|CAL58263.1| PUSH_ARATH Putative tRNA pseudouridine synthase (ISS) [Ostreococcus
tauri]
Length = 543
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 151/468 (32%), Positives = 235/468 (50%), Gaps = 42/468 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY--GNLQKIAW 133
+KK VAL + YVG Y+G +T++ +E ALF+ GGI NY LQ++ W
Sbjct: 86 KKKPVALLLAYVGAGYKGNTHNAQAVRGTTVDDVVEDALFRWGGILLPNYRSKGLQRLKW 145
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+RSSRTDKGV SL T++ L+ EI P+ W D A+ + HLP +++ F++ + +S
Sbjct: 146 SRSSRTDKGVSSLCTVVSLRAEIDPEVWTTDVEARATARDITKHLPDDVECFAVYNTPKS 205
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
F RREC +R Y YLLPA V+G++ ++ FN L+ F G HPFHNYT+RS+
Sbjct: 206 FQARRECVMRTYEYLLPARVLGLDGDAMDESGRRRLALFNEALSCFIGSHPFHNYTKRSQ 265
Query: 254 YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEK 313
Y K K R R + S+ R ++ +DG E +E ++ D+
Sbjct: 266 YTAKARKDFR--PRLRDSRGNAAWRGQDGAVMDDGSEDASEEADDESEEARPTTTATDDG 323
Query: 314 ANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCG 373
V G +++++ WL E+D DK++ SHFR+I + S G
Sbjct: 324 RPFPEHV--------------GDREKHTY------WLLESDWTDKITQSHFRRIHNFSAG 363
Query: 374 KLEKSLGFG-----------YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
+ + +V +S+ GESFML+QIRKM+ +AVAV P + L SL
Sbjct: 364 SEVERMTITNEDGSTTQSEPFVRVSVRGESFMLYQIRKMIASAVAVSLGHCPLEFLPASL 423
Query: 423 AKHSRIVLPLAPSEVLFL---RANSFSVRTRPGVTRPEMQTMVE-SEEILKMVDEFYTSV 478
A+ R +PLAP+ L+L +F V T V P T +E SE + + + F
Sbjct: 424 ARPCRAAMPLAPASTLYLYDVEFMNFRVNTESSVEPPNRLTKLEPSEAVREDLARFRRDK 483
Query: 479 TLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKR 526
P ++ L + + W + +NL +F ++ E + + A++ +K R
Sbjct: 484 LEPALAPALASDE--WDAFRDNL-RFCNVTPEISEVIVAAFETYKANR 528
>gi|302803171|ref|XP_002983339.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
gi|300149024|gb|EFJ15681.1| hypothetical protein SELMODRAFT_117791 [Selaginella moellendorffii]
Length = 437
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/185 (54%), Positives = 131/185 (70%), Gaps = 6/185 (3%)
Query: 76 RKKKVALRVGYVGTDYRG------LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
RKKKVA+ +GYVGT Y+G L++ SL+ IE +L+ A++KAGGI +SNYG+
Sbjct: 28 RKKKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHM 87
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+ WARSSRTDKGVHSLAT+I LKME+P DAW+DDP GI++A R+N HLP+ I+VF ++P
Sbjct: 88 KVGWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADRINRHLPQCIRVFGVVP 147
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
++F PR C+ R Y Y LPA +GIN +++ EI + F L FEGEHPFHNYT
Sbjct: 148 VSKTFRPRMACSERSYDYFLPALCVGINQRVSTCEIKQLLEQFRLQLKLFEGEHPFHNYT 207
Query: 250 ERSKY 254
R Y
Sbjct: 208 IRRNY 212
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 347 ARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAV 406
A WL E D D++++ H+RKI CSCG +EK + +S++G SFM+HQIRKM+GTAV
Sbjct: 259 AYWLQELDPTDRITSQHYRKIIRCSCGDIEKFGDTLALRVSVTGASFMVHQIRKMIGTAV 318
Query: 407 AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE 466
AV RKLLP DI+ +SL +HSRIVLP+AP E L L ++ F + + S
Sbjct: 319 AVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTLASSKFCSQ------HSTSHAINLSSL 372
Query: 467 ILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKR 526
+ + F+ E+ K + + + PW +W E ++ + +P + +R+AW WK++R
Sbjct: 373 GCQRREAFWKDHVFLEIVKAMKSERDPWNKWCEAMDSYCYLPEPDVSSLRDAWLDWKKQR 432
>gi|302754550|ref|XP_002960699.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
gi|300171638|gb|EFJ38238.1| hypothetical protein SELMODRAFT_63437 [Selaginella moellendorffii]
Length = 403
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/185 (53%), Positives = 130/185 (70%), Gaps = 6/185 (3%)
Query: 76 RKKKVALRVGYVGTDYRG------LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
RKKKVA+ +GYVGT Y+G L++ SL+ IE +L+ A++KAGGI +SNYG+
Sbjct: 1 RKKKVAMWIGYVGTGYKGNHCSLFLELSALNSSLTAIEADLDKAIYKAGGILDSNYGHHM 60
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+ WARSSRTDKGVHSLAT+I LKME+P DAW+DDP GI++A +N HLP+ I+VF ++P
Sbjct: 61 KVGWARSSRTDKGVHSLATVISLKMELPIDAWRDDPGGIEIADMINRHLPQCIRVFGVVP 120
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
++F PR C+ R Y Y LPA +GIN +++ EI + F L FEGEHPFHNYT
Sbjct: 121 VSKTFRPRMACSERSYDYFLPALCVGINQRVSTCEIKQLLEQFRLQLKLFEGEHPFHNYT 180
Query: 250 ERSKY 254
R Y
Sbjct: 181 IRRNY 185
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 104/177 (58%), Gaps = 6/177 (3%)
Query: 347 ARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAV 406
A WL E D D+++A H+RKI CSCG +EK + +S++G SFM+HQIRKM+GTAV
Sbjct: 233 AYWLQELDPTDRITAQHYRKIIRCSCGDIEKFGDTLALRVSVTGASFMVHQIRKMIGTAV 292
Query: 407 AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE 466
AV RKLLP DI+ +SL +HSRIVLP+AP E L L ++ F + + S
Sbjct: 293 AVTRKLLPPDIIQMSLCRHSRIVLPIAPCEGLTLASSKFCSQ------HSTSHAINLSSL 346
Query: 467 ILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
+ + F+ E+ K + + + PW +W E ++ + +P + +R+AW WK
Sbjct: 347 GCQRREAFWKDHVFLEIVKAMRSERDPWNKWCEAMDSYCYLPEPNVSSLRDAWLDWK 403
>gi|255088754|ref|XP_002506299.1| predicted protein [Micromonas sp. RCC299]
gi|226521571|gb|ACO67557.1| predicted protein [Micromonas sp. RCC299]
Length = 601
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 210/452 (46%), Gaps = 67/452 (14%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
R PA S + L RP D E +KK VAL +GYVG Y G
Sbjct: 82 RQPAGDHVHPSHLIPPNLRRP------DVPETYKKKPVALLMGYVGAGYSGNTTNASLPR 135
Query: 103 LSTIEGELETALFKAGGIRESNYGN--LQKIAWARSSRTDKGVHSLATMICLKMEIPPDA 160
ST++ LE ALF AG I SNY + L ++ W+RSSRTDKGV SLAT++ ++E+
Sbjct: 136 GSTVDDVLEDALFDAGCILLSNYRSRSLSRLKWSRSSRTDKGVSSLATVVSARLEVDVGV 195
Query: 161 WKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGIN--- 217
W++DP G +A +N HLP +++VF + +SF RR C R Y YLLPA +G+N
Sbjct: 196 WENDPEGTRIAADINRHLPNHVRVFGAYSTPKSFQARRACVRRTYDYLLPATCLGLNVNG 255
Query: 218 -----------SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSK 266
+L A + ++ F L FEG H FHNYT RS Y P R ++
Sbjct: 256 ERDAALAWPGAPELADATGEEVMARFRRALRMFEGSHYFHNYTRRSAYAPAPDGGRRRAR 315
Query: 267 RAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQE 326
A +E+EG E E DGE + G G S E G +
Sbjct: 316 ARGAGD----DEDDETEGSE---PMDEAEDGEAEDGAG---DSPPEHV-------GCRRR 358
Query: 327 DCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFG---- 382
C WL D+AD + H RK+ S + G
Sbjct: 359 GCY-------------------WLKARDDADLVGVKHARKVNSFIAADPAVAAGHKDAPP 399
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL-- 440
+V ++++G+SFML+QIRKM+ TAVA P +++ SL + +RI P+AP+ L+L
Sbjct: 400 FVRVTVNGDSFMLYQIRKMIATAVAAAIGHFPLELIPASLTRPARIATPIAPASTLYLVD 459
Query: 441 -RANSFSVRTRPGVTRPEMQTMVE--SEEILK 469
SF R V+ PEM E +E I K
Sbjct: 460 AEFMSFRPRKEAKVSGPEMPGDAENIAENIAK 491
>gi|116794266|gb|ABK27072.1| unknown [Picea sitchensis]
Length = 212
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/192 (47%), Positives = 125/192 (65%), Gaps = 8/192 (4%)
Query: 1 MAIYPLRLLHSPWSARSITSTLSTVGFSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTL 60
++P + H P ++R + F + P + S+S K+ P +
Sbjct: 14 FPLFPFKFSHHPKNSRPLP-------FFKISPTIQNSPWTICVSITSTSIKAEPDLPEVE 66
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
+ +PN+ +W+P+ K+KVA+R+GYVGT+YRGLQ+QRD S TIE ELE A+ KAGG+
Sbjct: 67 SENSPNN-QTRWKPITKRKVAMRIGYVGTNYRGLQIQRDSASTITIEDELEKAILKAGGM 125
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
ESNYGNL K+ W RSSRTDKGVHSLAT+I +KMEIP AW++DP GI LA +N HLP
Sbjct: 126 LESNYGNLHKLGWRRSSRTDKGVHSLATVIAMKMEIPDGAWEEDPDGIALADVINRHLPY 185
Query: 181 NIKVFSILPSQR 192
NI++FSILP +
Sbjct: 186 NIRIFSILPVNK 197
>gi|255553387|ref|XP_002517735.1| hypothetical protein RCOM_1135690 [Ricinus communis]
gi|223543133|gb|EEF44667.1| hypothetical protein RCOM_1135690 [Ricinus communis]
Length = 139
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/139 (66%), Positives = 112/139 (80%), Gaps = 2/139 (1%)
Query: 401 MVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQ 459
MVGTAVAVKRKLLPRDIL LSLAK SRIVLPLAPSEVL LR N+FS+R RP + R EM
Sbjct: 1 MVGTAVAVKRKLLPRDILPLSLAKFSRIVLPLAPSEVLVLRGNNFSLRKRPDIGARLEML 60
Query: 460 TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAW 519
TMVESEEIL V++FY+++ LP+VSK LD SPW WIE L+++TSIP+ QL+EVR+AW
Sbjct: 61 TMVESEEILNAVNKFYSNIMLPQVSKLLDPCGSPWKIWIEKLDEYTSIPDAQLEEVRSAW 120
Query: 520 QLWKEKRFESKTIVESAIS 538
LWKEK F+++ V S ++
Sbjct: 121 HLWKEK-FQTRNSVASVVN 138
>gi|452823736|gb|EME30744.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 641
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 151/545 (27%), Positives = 243/545 (44%), Gaps = 89/545 (16%)
Query: 30 KISAVNLLPLSCYRCPASS--SSKSSPSVSHTLTRPTPNSSDDKWEPVR-KKKVALRVGY 86
K++ L SCY S ++K ++ T NS + E R K+ + L +GY
Sbjct: 58 KVTPALLSYRSCYTSGKDSWSNTKGVTDCKNSGTNMEKNSQNLSAEEGRVKRMICLYIGY 117
Query: 87 VGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSL 146
VGTDY GLQ+ R E + TIE E+E AL+ G I E N+ +QKI+W+R+SRTDKGVH+
Sbjct: 118 VGTDYYGLQVNRQE-GIKTIEEEIERALYSCGWIGEQNFRRVQKISWSRASRTDKGVHAC 176
Query: 147 ATMICLKMEIPPDAWKDD-------------------------PYGIDLAKRVNAHLPRN 181
+I LK + ++ D D+ +++N +LP +
Sbjct: 177 GNVIALKALLKEQWFELDSNFEKTKQNTRTKNNSDELAFSSLGSLKKDVLEQLNRNLPDS 236
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEG 241
I++ + P + FD R CN R Y YL+P E I S+ I+ I IL+ F+G
Sbjct: 237 IRILGVQPVTKHFDARSRCNFRAYEYLMPLEAIPGASE----NIEQAICRLEEILSLFKG 292
Query: 242 EHPFHNYTE--RSKYRRKPHK-----------TGRVSKRAKASKDAVFSRVEESEGEEDG 288
H FHN++ R+ +++ + T R + + D +E++ +E
Sbjct: 293 THRFHNFSSGLRAAHKKANARLEGSDPGEEFTTVRSEQVSSTEADIEERNIEDANNKEQS 352
Query: 289 FSKVEESDGEEDLGIGGEISSDDEKANQNS--MVSGVHQEDCCNQHANGLKDQNSSSVIR 346
K EE+D EI +D + Q S + + Q + H LK Q IR
Sbjct: 353 MKKYEEND---------EIDIEDNQEMQFSDYLCKVIRQWPEHSSHR--LKRQ---EYIR 398
Query: 347 ARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAV 406
+ ++ + + G LE G YV + +G+SF+LHQIRKM+G A+
Sbjct: 399 SVYIADIE------------------GPLEIQ-GRNYVLLRFAGQSFILHQIRKMIGGAL 439
Query: 407 AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE 466
+V L + L ++L ++ + LAPSE L L F R E ++ S
Sbjct: 440 SVMYGRLSMEALKVALYGPFQVPISLAPSEPLMLVLCDFWNSKR------ERYELIPSPV 493
Query: 467 ILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKR 526
+ + + + LP V++ L+ + ++E L + N L + + W EKR
Sbjct: 494 TQEAMKHYKYKILLPRVAELLEQKRPFERFFVEGLYDYGG--NGNLQRLITKFHEWDEKR 551
Query: 527 FESKT 531
+ K
Sbjct: 552 RQRKV 556
>gi|412985295|emb|CCO20320.1| predicted protein [Bathycoccus prasinos]
Length = 593
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 127/436 (29%), Positives = 191/436 (43%), Gaps = 94/436 (21%)
Query: 63 PTPNSSDD--KWEPVRKK-KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGG 119
P+P +D K+E RKK +AL + YVG ++G ST++ +E A++KAGG
Sbjct: 76 PSPTDDEDATKFELPRKKIPIALVLAYVGDTFKGNTQNVMLPRGSTVDDVIEDAIYKAGG 135
Query: 120 IRESNY--GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-------- 169
I SNY L ++ W+RSSRTDKGV SL T++ L+ME P A+ +
Sbjct: 136 ILFSNYRSKGLSRLKWSRSSRTDKGVSSLFTVVGLRMEAPVRAYGGGKEVVGEEETNDEE 195
Query: 170 -----------------------------LAKRVNAHLPRN-IKVFSILPSQRSFDPRRE 199
+ +++N HLP + +K F+ + +SFD RR
Sbjct: 196 DERKSSSRNRSSKRSEEEEEEDDAEAKALIVEKINRHLPTDTVKAFACFKATKSFDARRA 255
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR-KP 258
R Y YLLP + + + + + F L FEG HPFHNYT+R Y K
Sbjct: 256 AISRTYEYLLPLKCL-------RDDKNGELEMFREALKTFEGSHPFHNYTKRGLYGAGKG 308
Query: 259 HKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNS 318
+ R R +K + E+D G+G SS++++ +
Sbjct: 309 NDKNRKGGRGNRNKKNALT--------------------EDDDGLGETSSSEEQELEEEE 348
Query: 319 MVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGK---- 374
+ + +H WL E D D + H+R+I +C K
Sbjct: 349 EKELPKRIETSGKHTY--------------WLLEKDVDDLVHVMHYRRIHEFTCSKEPEI 394
Query: 375 LEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV-----KRKLLPRDILTLSLAKHSRIV 429
+E + +V + + GESFMLHQIRKM+ TAV V + +P + SL + R+V
Sbjct: 395 IEGFESYPFVRVKVYGESFMLHQIRKMIATAVLVALDSEETPTMPLSFIKASLCRPCRVV 454
Query: 430 LPLAPSEVLFLRANSF 445
P+AP LFL F
Sbjct: 455 TPMAPPLTLFLTGAEF 470
>gi|301105176|ref|XP_002901672.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
gi|262100676|gb|EEY58728.1| ubiquitin fusion degradation protein, putative [Phytophthora
infestans T30-4]
Length = 840
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 204/450 (45%), Gaps = 68/450 (15%)
Query: 87 VGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSL 146
+GT Y GLQ+ ++ TIE ++ A+F+AG +RESN+ +L KI WARSSRTDKGVH+
Sbjct: 1 MGTGYHGLQLN---DNVKTIEDDIRNAIFQAGAMRESNFEDLGKIDWARSSRTDKGVHAG 57
Query: 147 ATMICLKMEIPPDAWKDDPYG--IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRK 204
+ K+ I + D G +L + +NA LP NI+VFS + F R+ C LR+
Sbjct: 58 CIVFSGKLLIDEENKVDPISGRVHELKEALNASLPENIRVFSCTRVSKRFSARKNCVLRE 117
Query: 205 YSYLLPAEVIG---INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKT 261
Y Y +P + I S + D +++F L +EG H FHN+T Y K
Sbjct: 118 YEYFMPLSFLRGSLIGSDGEDFDTDEAVAEFCRALRRYEGVHDFHNFTRSRSYFYK---- 173
Query: 262 GRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVS 321
V + K K V E SDD +
Sbjct: 174 --VQAKKKHYKAHYRRSVAE---------------------------SDD---------A 195
Query: 322 GVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGF 381
GV D + +G+ D + S +++ E + KL H R I+SCS + G
Sbjct: 196 GVEDNDEDAEEESGIDDYSEES---SQFEDEEELTRKLLPRHRRSIYSCSGSLVPDFCGE 252
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
++ I I G++F+L+QIR MVG A+AV K + R +L + + +P+AP+E L L
Sbjct: 253 PHLRIHIVGQAFLLNQIRCMVGGALAVATKGMSRVEFDAALLTNRIVRVPIAPAEGLVLL 312
Query: 442 ANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDAT--KSPWTEWIE 499
++SF ++ + T++ E + E++KF D K + W
Sbjct: 313 SSSFGGKSHTVSLYEDPNTVLAKERKDVVHRVLLNRKEDEEMTKFRDEVIYKEIASSW-- 370
Query: 500 NLEKFTSIPNEQLDEVRNAWQLWKEKRFES 529
+DE + W+ + E+ +ES
Sbjct: 371 -----------DMDEKMDRWRAYLERCYES 389
>gi|299470490|emb|CBN78481.1| pseudouridylate synthase, putative [Ectocarpus siliculosus]
Length = 743
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/200 (42%), Positives = 114/200 (57%), Gaps = 20/200 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGYVGT + G Q D ++ T+EGELETAL+KAG I +SNYG+L KI W R+
Sbjct: 28 KRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRT 87
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
SRTDKGVH+ T+ K+ +P + + YG D ++N LP +I+ FS+ +S
Sbjct: 88 SRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKD---KLNEKLPDDIRCFSVSKVPKS 144
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
F R EC LR+Y+Y LP E++ D + F +L F G H FHNY
Sbjct: 145 FRGREECTLREYTYYLPRELL---------PDDEALGKFRELLKLFVGTHSFHNYAS--- 192
Query: 254 YRRKPHKTGRVSKRAKASKD 273
K + V KR KAS D
Sbjct: 193 --TKGRQLKEVRKRVKASID 210
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G++F+ +QIR M+G A+ R L + +L ++ +PLAP+E L L +
Sbjct: 450 FVRIDIRGKAFVYNQIRLMIGGALGEARGDLWSGFVEAALKTPYKLRVPLAPAEGLVLES 509
Query: 443 NSFSVRTRPGVTRP 456
+F+ T V P
Sbjct: 510 QAFTRHTNALVLDP 523
>gi|384251305|gb|EIE24783.1| pseudouridine synthase [Coccomyxa subellipsoidea C-169]
Length = 391
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 108/170 (63%), Gaps = 4/170 (2%)
Query: 93 GLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL 152
GLQ+QR ++T+E LE A+FKAGGI ESN G L KI W+RSSRTDKGVHS +T+I L
Sbjct: 7 GLQLQRGVEDITTVEAALEEAIFKAGGILESNRGALHKIDWSRSSRTDKGVHSCSTVIGL 66
Query: 153 KMEIPPDAWKDDPYGIDLAKRVNAHLP-RNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
KME ++++ DP G+ +A +N HLP + ++V S+ + + FD R+ C R YSY LP
Sbjct: 67 KMECVVESFESDPEGLGIAGEINKHLPGQQVRVLSVQRTTQKFDARQICEGRVYSYFLPT 126
Query: 212 EVIGINSQLTAAEID-SHISDFNAILNEFEGEHPFHNYTERSKYRRKPHK 260
+IG+ +L +E D + L +EG H FHN+T+R YR K
Sbjct: 127 SIIGL--ELDGSEEDRERLRLLRECLALYEGVHAFHNFTKRRLYRTSQRK 174
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 344 VIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSL--GFGYVEISISGESFMLHQIRKM 401
V W E DEAD ++ SHFR IFS + + G +++ SG+SFMLHQIR M
Sbjct: 187 VTAGAWNEERDEADPITRSHFRHIFSATADDPTPLVPGGTPCIKVVFSGQSFMLHQIRHM 246
Query: 402 VGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTM 461
+G AVAV R +P D + L SR ++PLAP VL L + + ++ R R M
Sbjct: 247 IGAAVAVARGTIPLDYVEGCLRSPSRAIMPLAPPHVLVL-SETVMMQWRDEQARA-MLAH 304
Query: 462 VESEEI------LKMVDEFYTSVTLPEVSKFLDATKSPWTEWI 498
E + L F + V P ++ L A W E +
Sbjct: 305 TTGERLTLRSGGLAAQQAFLSEVLHPAINDLLQAKDWEWWEGV 347
>gi|344300120|gb|EGW30460.1| hypothetical protein SPAPADRAFT_157524 [Spathaspora passalidarum
NRRL Y-27907]
Length = 525
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 180/368 (48%), Gaps = 30/368 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K A+ +GY GT Y G+Q+Q D ++ TIE +L A KAG I N +++K + R+
Sbjct: 85 KRKCAVMIGYCGTGYNGMQLQNDP-TIKTIERDLYDAFGKAGAISRENAEDMKKSGFMRA 143
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ K++N HLP I+V+ I + + FD
Sbjct: 144 ARTDKGVHAAGNVVSLKLII------EDP---DIVKKINEHLPDQIRVWGIQRTTKGFDC 194
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP--FHNYTERSKY 254
R+ C+ R Y YLLP L + ++ +SD +L E + P FH+ E +K+
Sbjct: 195 RKLCSSRIYEYLLPT------YSLLPPKKNTVLSD---LLEEKRAKCPDLFHDDPEGAKW 245
Query: 255 RRKPHKTGRVSKRAKASKDAVFSRVEESEGE-EDGFSK-VEESDGEEDLGIGGEISSDDE 312
+ H+ + + D++ + +E + E ED K V DGE L G++ +
Sbjct: 246 WEETHQKILDAGITQEQLDSIGTTIESTGPESEDATDKPVVFEDGE--LTEFGKLVKQVK 303
Query: 313 KANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSC 372
S S + NQ +K + + SAS F K + S
Sbjct: 304 AIENQSRRSFKISTERLNQFREAMKQYEGTHNFHNFTI--GKHFKDPSASRFMKTTTVSD 361
Query: 373 GKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPL 432
+ + G +V I I G+SFMLHQIRKM+ A V R P +I+ + +I +P
Sbjct: 362 PFVIE--GTEWVSIKIHGQSFMLHQIRKMIAMATMVVRIGCPVNIIQ-DFFGNKKINIPK 418
Query: 433 APSEVLFL 440
AP+ L L
Sbjct: 419 APALGLLL 426
>gi|359492954|ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
vinifera]
Length = 503
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/470 (27%), Positives = 209/470 (44%), Gaps = 83/470 (17%)
Query: 54 PSVSHTLTRPTPNSSDD----KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGE 109
P +S T T D K +++K+A+ Y G Y+G+Q TIEG+
Sbjct: 11 PKMSQTTTTSDDEDCDTTTATKKPRYKRRKIAIFFAYCGVGYQGMQKN---PGAKTIEGD 67
Query: 110 LETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID 169
LE ALF +G + E + G+ ++ WARS+RTDKGV ++ ++ + I DP G
Sbjct: 68 LEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI-------DPPG-- 118
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI 229
L +R+N++LP I++F SF+ ++ C+ R+Y YL+P + A + SH
Sbjct: 119 LVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIP---------VFALDPSSH- 168
Query: 230 SDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGF 289
D ++L E+ E S+ RK G + KR+ SK +V R E+ EGE
Sbjct: 169 PDRESVLASVGSENELVKCLECSERGRKV--VGIMGKRSFESKVSVDDR-EDVEGESKNI 225
Query: 290 --SKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCC--NQHANGLKD-----QN 340
+ + +S+ +E+ ++S D + + NS+ + + C N+ + D QN
Sbjct: 226 VGAAILKSEAKEE-----SMASSDNRHDGNSISQPIKEGRCFQDNETSESTPDSRASAQN 280
Query: 341 SSSVIRAR--------------WLYETDEADKLS--ASHF-------------------- 364
V + + Y E ++ + H+
Sbjct: 281 EPGVSHSEQSDKGENKLEKGSGFCYGDKERERFNRILGHYVGTHNFHNFTTRIKAEDPSA 340
Query: 365 -RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLA 423
R I S + G +V+ + G+SFMLHQIRKM+G AVA+ R + P +L +L
Sbjct: 341 QRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALL 400
Query: 424 KHSRIVLPLAPSEVLFLRA---NSFSVRTRPGVTRPEMQTMVESEEILKM 470
K I +P AP L+L +S++ + R M+ E E KM
Sbjct: 401 KDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKM 450
>gi|325190643|emb|CCA25138.1| ubiquitin fusion degradation protein putative [Albugo laibachii
Nc14]
Length = 585
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 13/196 (6%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E K++VA+ GY G+DY G+Q+ + + TIE E+ A++ G +R SN+ +L KI
Sbjct: 73 ESFVKRRVAIVAGYNGSDYHGVQLNPN---VPTIEDEIRKAMYHIGALRASNFQDLNKID 129
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYG---IDLAKRVNAHLPRNIKVFSILP 189
W+RSSRTDKGVH+ + K+ + D DP L + +N +LP NI++FS+
Sbjct: 130 WSRSSRTDKGVHASTIVFAGKLLLNEDVI--DPVTGRVRGLTRALNENLPPNIRIFSVTR 187
Query: 190 SQRSFDPRRECNLRKYSYLLP-----AEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
SF+ R EC LR+Y Y LP A I N Q +++ + F + L ++EG H
Sbjct: 188 VCNSFNARTECALREYEYFLPLAFLSASCITENRQKMRGQMNVMVQGFLSALEQYEGIHD 247
Query: 245 FHNYTERSKYRRKPHK 260
FHNYT + K H+
Sbjct: 248 FHNYTRSRSHFYKLHE 263
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 363 HFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
H R ++ C +E G YV++ I+G++F+LHQIR M+G A++ + + SL
Sbjct: 309 HRRAVYQCRGSLIEDFYGEPYVKVHITGQAFLLHQIRCMIGGAISFATDAISSTVFEASL 368
Query: 423 AKHSRIVLPLAPSEVLFLRANSF-SVRTRPGVTR----------PEMQTMVESEEILKMV 471
+ +P+AP+E L LR+NSF R R + R P + ++ S+ +
Sbjct: 369 YTDQIVRIPIAPAEGLLLRSNSFGGKRHRVSLVRDWNTDFSTDSPSVHRVLLSDREAALA 428
Query: 472 DEFYTSVTLPEVS---KFLDATKSPWTEWIENL 501
+ F V E++ K L + +PW W E L
Sbjct: 429 ETFRHEVIYREIAAAWKNLKGSAAPWEAWSEYL 461
>gi|224061937|ref|XP_002300673.1| predicted protein [Populus trichocarpa]
gi|222842399|gb|EEE79946.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 174/382 (45%), Gaps = 44/382 (11%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
K + +++K+A+ Y G Y+G+Q TIEG+LE ALF AG + E + G ++
Sbjct: 10 KKQRYKRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFHAGAVPEQDRGIPKR 66
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
WARS+RTDKGV ++ ++ + I DP G L +R++++L ++F
Sbjct: 67 YDWARSARTDKGVSAVGQVVSGRFYI-------DPPG--LVERLHSNLSPQFRIFGYKRV 117
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
SF+ ++ C+ R+Y YL+P + A + SH D ++L E
Sbjct: 118 TGSFNAKKFCDRRRYVYLIP---------VFALDPCSH-RDRESVLASLRSGSELIKCLE 167
Query: 251 RSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSD 310
S+ RK G V KR+ F + S ++D K E + +++ + E D
Sbjct: 168 CSERGRKV--AGAVGKRS-------FELTDNSSNDKDASVKSEIKEEVDEIIVSVENGDD 218
Query: 311 DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYE------TDEADKLSASHF 364
++ ++ MV G + G K++ + I ++ T S
Sbjct: 219 EKTKSKEEMVKG-------SSFCYGEKEKERFNRILGYYVGSHNFHNFTTRTKAEDPSAR 271
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S G +V+ + G+SFMLHQIRKM+G AVA+ R P ++ +L K
Sbjct: 272 RYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMRNCAPESLIQTALQK 331
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
I +P AP L+L F+
Sbjct: 332 DVNINVPTAPEVGLYLDECFFT 353
>gi|325190406|emb|CCA24877.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 463
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 36/222 (16%)
Query: 62 RPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIR 121
R P + + RK++ V Y G Y G+Q+ ++TIE ELE ALF+AGGI
Sbjct: 56 RQNPLTDAPSGKACRKRRYGFWVAYCGEKYSGMQL---NEGVATIEAELERALFQAGGIS 112
Query: 122 ESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLA---KRVNAHL 178
++NYG LQKI W+R++RTDKGVH+ ++ K+ + +D G + +++NA L
Sbjct: 113 DANYGFLQKIGWSRAARTDKGVHAAGQLVTAKLSFDSKS-SEDRNGEQIKGFIEKINASL 171
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINS--------QLTAAE------ 224
P +I+V ++ ++F+ + C+ R Y YL+P V ++T AE
Sbjct: 172 PSDIRVMDMVTVTKNFNAKLSCDYRTYEYLIPTFVFAGRQRKDHKDPVKVTQAEEIVPKT 231
Query: 225 IDSHI---------------SDFNAILNEFEGEHPFHNYTER 251
D H+ D N IL +FEG H FHN+T +
Sbjct: 232 TDLHLDVNHQQAYRMSTEQYDDLNRILAKFEGSHTFHNFTSK 273
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 80/171 (46%), Gaps = 24/171 (14%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAV-----AVKRKLLPRDILTLSLAKHSRIVLPLAP 434
F ++ + + G+SF+LHQIRKM+GTAV A + ++ R +L ++ LP AP
Sbjct: 300 AFEWIRLRVKGQSFLLHQIRKMIGTAVDLCAGAAESNVIERVMLL------DKMDLPKAP 353
Query: 435 SEVLFLRANSF-SVRTRPGVT-------RPEMQTMVESEEILKMVDEFYTSVTLPEVSKF 486
S L+L F + G T P ++ + + ++ V+ F + P + +
Sbjct: 354 SVGLYLSEAHFEKYNLKLGQTSGQDNQAHPNLK-LTSKDTVVDAVEAFKQTHIFPHIFE- 411
Query: 487 LDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESKTIVESAI 537
++T+ + W+E L +P E W++ KE+ K + ++ +
Sbjct: 412 QESTQRTYGTWLETL---CRMPFSYHLETYAVWKVGKEEEAIRKNVDKAQV 459
>gi|384253414|gb|EIE26889.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 314
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 98/187 (52%), Gaps = 24/187 (12%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K+KVA+ V +VG Y G+Q TIEGEL +A+ KAG I + N G+ K+ W R
Sbjct: 1 KKRKVAVFVAFVGAGYSGMQ---HNPGCKTIEGELGSAMNKAGAISDENAGDFSKVQWNR 57
Query: 136 SSRTDKGVHSLATMICLKMEIP-PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGV + ++ LKM I PD +R+N+HLP I+V SF
Sbjct: 58 AARTDKGVSAAGNVVSLKMMIAFPDT----------VERINSHLPEQIRVLGFTRVTNSF 107
Query: 195 DPRRECNLRKYSYLLPAEVI--GINSQLTAAEIDSHISDF--------NAILNEFEGEHP 244
D R+ C+ R+Y Y+LPA + G + A S F N +L FEG H
Sbjct: 108 DARKHCDRRRYEYILPAFITIDGAAAAAAAEAAGSRQCRFSAEQQARLNEVLGAFEGTHS 167
Query: 245 FHNYTER 251
FHNYT R
Sbjct: 168 FHNYTVR 174
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S C G +V + + G+SFMLHQIRK+VGTAVAV R + D +TL+L
Sbjct: 184 RYILSFKCAGTMNLEGQQWVRMVVVGQSFMLHQIRKLVGTAVAVMRGVATPDAITLALDP 243
Query: 425 HSRIVLPLAPSEVLFLRANSF-SVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEV 483
+V P+AP LFL F S R G R + V VD F P +
Sbjct: 244 ARVVVTPMAPELGLFLDECVFESYNDRWGNDR---EACVRLAAFQDQVDAFKRERIYPHI 300
Query: 484 SKFLDATKSPWTEWI 498
+ + DA W+
Sbjct: 301 ASY-DAKNGTNAAWL 314
>gi|50287019|ref|XP_445939.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637780|sp|Q6FV05.1|PUS1_CANGA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49525245|emb|CAG58858.1| unnamed protein product [Candida glabrata]
Length = 549
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 183/392 (46%), Gaps = 59/392 (15%)
Query: 69 DDKWEPVR------KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
DD P+ K+KVA+ +GY GT Y G+Q TIE L A AG I +
Sbjct: 72 DDNGNPIPREPRLPKRKVAVMIGYCGTGYHGMQYNPPN---PTIEAALFKAFVDAGAISK 128
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
+N +L+K + R++RTDKGVH+ +I LKM I +DP +D ++NA+LP I
Sbjct: 129 ANSNDLKKNNFMRAARTDKGVHAGGNLISLKMII------EDPEIMD---KINANLPEGI 179
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPA-EVIGIN-SQLTAAEIDSHISDFNAILNE-F 239
+++ I ++FD R+ C+ R Y YLLP +IG + +I+S ++ +L+E
Sbjct: 180 RIWDIERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGTILNNDIESSKTELPGVLDEDL 239
Query: 240 EGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVE-----E 294
E + + N+ +K P + + KD EE + +E+ + KV+ E
Sbjct: 240 ESKEFWENFEAAAKKEFTPEEIAAI-------KDYSPPPREEFDDQEELYQKVKQWKLLE 292
Query: 295 SDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGL-KDQNSSSVIRARWLYET 353
+ I E+ + +A N + G H N H L K+ S I R++ E
Sbjct: 293 NTHRRQYRI-SEMKLNKFRAAMNQYL-GAH-----NFHNFTLGKEFKDPSAI--RFMKEI 343
Query: 354 DEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLL 413
+D F K E +V I I G+SFMLHQIRKM+ A + R
Sbjct: 344 KVSDP---------FVIGDAKAE------WVSIKIHGQSFMLHQIRKMISMATLIARCGT 388
Query: 414 PRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P + ++ + +I +P AP+ L L A F
Sbjct: 389 PVERISQAFGPQ-KINIPKAPALGLLLEAPVF 419
>gi|428171114|gb|EKX40033.1| hypothetical protein GUITHDRAFT_113769 [Guillardia theta CCMP2712]
Length = 508
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/383 (29%), Positives = 169/383 (44%), Gaps = 84/383 (21%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +AL +GY GT Y GLQ+ L TI+GE+ + + AG I +SN + QK+ W+ S
Sbjct: 11 KRNLALLLGYKGTKYHGLQIS--AQGLPTIQGEIFNSFYTAGMISDSNKDDSQKLKWSSS 68
Query: 137 SRTDKGVHSLATMICLKM---EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
SRTDKGVH+ + K+ E P ++ P I +R N LP +I++ ++
Sbjct: 69 SRTDKGVHTSFCVCSFKLLMDETP--QYRVSPAEI---QRWNTFLPGDIRILQAFRLSKN 123
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
C R+Y YL+P V+ +S+ +L FEG H FHN++ +
Sbjct: 124 ARINNMCTQREYEYLVPFNVLN----------GRPVSELKRLLKAFEGTHRFHNFSG-AL 172
Query: 254 YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDL--GIGGEISSDD 311
+R K K S G EDG ES+GEED G GG S D
Sbjct: 173 FREKNQK---------------------SCGGEDG----AESNGEEDNADGDGGRKRSAD 207
Query: 312 EKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYE-TDEADKLSASHFRKIFSC 370
+G+ ++ GL+ + + W + TDE + R I+S
Sbjct: 208 --------AAGLEAKET---RWKGLRAKYHEAFASRDWKWPVTDETRMNRQEYVRTIYSV 256
Query: 371 SC--------GKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
+++++ YV I + G SF +HQIRKMV L ++L
Sbjct: 257 EVDDQPIRIKDEIDQAETDFYV-IRLKGVSFAMHQIRKMV---------------LEIAL 300
Query: 423 AKHSRIVLPLAPSEVLFLRANSF 445
+ H + +PLAP E L L SF
Sbjct: 301 SSHFLVSVPLAPPEPLILVGASF 323
>gi|159478785|ref|XP_001697481.1| predicted protein [Chlamydomonas reinhardtii]
gi|158274360|gb|EDP00143.1| predicted protein [Chlamydomonas reinhardtii]
Length = 446
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 93/156 (59%), Gaps = 10/156 (6%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIE LE ALF AG I E+N+G+ KI W+R+SRTDKGVHSL T++ L+M + +
Sbjct: 63 TIEQVLEKALFAAGCISEANFGSFSKIRWSRASRTDKGVHSLGTVMGLRMLVDDAKYVAG 122
Query: 165 P----YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
P G+ LA+ VN HLP I+VF+ + + F R C R Y Y LP +I + +
Sbjct: 123 PDGDCEGLALAEAVNTHLPPQIRVFT---TNKKFSARHMCEGRVYQYYLPVSMIDL--KC 177
Query: 221 TAAEIDSH-ISDFNAILNEFEGEHPFHNYTERSKYR 255
+E D+ ++ F L +EG HPFHN+T+R Y+
Sbjct: 178 DGSEEDAQRLAKFRDALKCYEGSHPFHNFTKRVTYQ 213
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 344 VIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFG--YVEISISGESFMLHQIRKM 401
V+ RW E D D+++ + +R+I+S + + + G + + +SG+SFMLH IR M
Sbjct: 237 VLLLRWQTEVDPRDRITQTFYRRIYSFTAADPKPMVEGGEPCLLLEVSGQSFMLHHIRHM 296
Query: 402 VGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS---VRTRPG------ 452
+G AVAV L+ +++L SL +R+ LP AP L L SF + PG
Sbjct: 297 IGAAVAVTLGLISKEVLLGSLTPPARVTLPRAPPHTLLLSDCSFGRFPAQQGPGDNDLRN 356
Query: 453 VTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIP 508
+T E ++ E + K + F V LP + + + + W +W ++ + P
Sbjct: 357 ITG-ERLSLREGGQQRK--EAFRNEVLLPALQQLVALPE--WQQWKASMYQVFPFP 407
>gi|348686693|gb|EGZ26507.1| hypothetical protein PHYSODRAFT_308307 [Phytophthora sojae]
Length = 497
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 54/221 (24%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ L V + G +Y G+QM + TIE ELE ALF+AGGI ESNYG LQKI W+R+
Sbjct: 70 KRRYGLWVAFCGKNYSGMQMN---EGVKTIEAELERALFEAGGIAESNYGFLQKIGWSRA 126
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ K+ + DA D P + +VNA LP +I+V ++ ++F+
Sbjct: 127 ARTDKGVHAAGQLLTAKLHVGEDA--DIPAFVG---KVNAALPEDIRVMHMVTVTKNFNA 181
Query: 197 RRECNLRKYSYLLPA------------------------------------------EVI 214
+ C+ R Y YL P V+
Sbjct: 182 KMTCDQRTYEYLAPTFIFAKRARAAAIKESEKTEEKGDAATAQWPSDLRDSEEGFDDNVV 241
Query: 215 GINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTER 251
N+ L A + D + NA L E+ G H FHN+T +
Sbjct: 242 IDNTTLEAHKAFRLSDETLEKLNATLKEYVGTHNFHNFTSK 282
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKH-SRIVLPLAPSEVLFLR 441
+V + + G+SF+LH IRKM+GTAV + + D T+ A +++ LP APS L+L
Sbjct: 310 WVRLRVVGQSFLLHHIRKMIGTAVEIVSGVT--DPSTIERAMQLTKMDLPKAPSVGLYLA 367
Query: 442 ANSFSV 447
F V
Sbjct: 368 QAHFEV 373
>gi|301091109|ref|XP_002895746.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
gi|262096658|gb|EEY54710.1| tRNA pseudouridine synthase [Phytophthora infestans T30-4]
Length = 470
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 128/266 (48%), Gaps = 70/266 (26%)
Query: 28 SNKISAVNLLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYV 87
+++ AV+ + R P+ + + ++PS+ PT K++ L V +
Sbjct: 39 ADRSDAVHPGSYAAQRQPSETPAANAPSM------PT------------KRRYGLWVAFC 80
Query: 88 GTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLA 147
G +Y G+QM + TIE ELE ALF+AGGI ESNYG LQKI W+R++RTDKGVH+
Sbjct: 81 GKNYCGMQMN---EGVKTIEAELERALFEAGGIAESNYGYLQKIGWSRAARTDKGVHAAG 137
Query: 148 TMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSY 207
++ K+ + DD G +AK V+A LP +I+V ++ ++F+ + C+ R Y Y
Sbjct: 138 QLLTAKLHV-----GDDIAGF-MAK-VDAALPEDIRVMHMVTVTKNFNAKMTCDQRTYEY 190
Query: 208 LLPAEVIGINSQLTAAE---------------------------------IDSH------ 228
L P + G + +A++ +++H
Sbjct: 191 LAPTFIFGKRMRSSASKNEEKQAEGTNQWPSNLRDSEEGFDSNVVIDNTTLEAHKAFRLS 250
Query: 229 ---ISDFNAILNEFEGEHPFHNYTER 251
+ NA L ++ G H FHN+T +
Sbjct: 251 DEILEQLNATLKQYVGTHNFHNFTSK 276
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKH-SRIVLPLAPSEVLFLR 441
+V + + G+SF+LH IRKM+GTAV V + D T+ A +++ LP APS L+L
Sbjct: 304 WVRLRVVGQSFLLHHIRKMIGTAVEVVSGV--SDPSTIERAMELTKMDLPKAPSVGLYLA 361
Query: 442 ANSFSV---RTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWI 498
F V + + ++ + V++F V + K + T++ + +W+
Sbjct: 362 QAHFEVYNMKMEDTIQTSHPPLDLKEPSVAAAVEQFKRDVIYDHIMKHEERTRT-YAKWL 420
Query: 499 ENLE 502
+E
Sbjct: 421 RTME 424
>gi|449455575|ref|XP_004145528.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Cucumis sativus]
Length = 519
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 186/419 (44%), Gaps = 74/419 (17%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
NS+ K + +++KVA+ Y G Y+G+Q TIE +LE AL+ AG + E +
Sbjct: 43 NSAAPKKQRYKRRKVAIFFAYCGVGYQGMQKN---PGAKTIEADLEEALYLAGAVPEQDR 99
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
G ++ WARS+RTDKGV ++ ++ + I P + D R+N++L I++F
Sbjct: 100 GLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVD---------RLNSNLSPQIRIF 150
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
SF+ ++ C+ R+Y YL+P + N + + + N ++ E
Sbjct: 151 GYKRVTASFNAKKFCDRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLE----- 205
Query: 246 HNYTERSKYRRKPHKTGRVSKRAKASKDAV---------FSRVEESEGEEDGFSKVEESD 296
+ER + G + KR K A+ + +E S+ + +G +E+S
Sbjct: 206 --CSERGR-----KVEGLIGKRNFEVKTAITESDISSNTVNAIEVSDVQANGV--LEDSA 256
Query: 297 GEED---------------LGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNS 341
D L +G E ++ E + + + G E ++ + K+++S
Sbjct: 257 TTSDSNKQTSVLVENTATELNVGSEGTAKSESSEMSGL--GSDSEIVVSKESVNGKEKSS 314
Query: 342 SSVI-----RARW---------------LYETDEADKLSASHFRKIFSCSCGKLEKSLGF 381
S +AR+ +A+ +A F F S + + + F
Sbjct: 315 GSFKYGEEEKARFNRILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEF 374
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
V+ + G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+L
Sbjct: 375 --VKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYL 431
>gi|18411027|ref|NP_565126.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|6573728|gb|AAF17648.1|AC009978_24 T23E18.5 [Arabidopsis thaliana]
gi|21592498|gb|AAM64448.1| unknown [Arabidopsis thaliana]
gi|21703099|gb|AAM74492.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|23308411|gb|AAN18175.1| At1g76120/T23E18_5 [Arabidopsis thaliana]
gi|332197677|gb|AEE35798.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 463
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 175/389 (44%), Gaps = 44/389 (11%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+ + G Y+G+Q TIEGELE ALF AG + ES G + +ARS+
Sbjct: 22 QKVAIIFAFCGVGYQGMQKNP---GAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV ++ ++ + + DP G R+N++LP I++F SF +
Sbjct: 79 RTDKGVSAVGQVVSGRFIV-------DPLG--FVNRLNSNLPNQIRIFGYKHVTPSFSSK 129
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ C+ R+Y YLLP + S + + + + FE +ER + +
Sbjct: 130 KFCDRRRYVYLLPVFALDPISHRDRETVMASLGPGEEYVKCFE-------CSERGR-KIP 181
Query: 258 PHKTGRVSKRAKASKDAVF--------SRVEESEGEEDGFSKVEESDGEEDLGIGGEISS 309
P G+ +K F S S+ + + S D+ + G I
Sbjct: 182 PGLVGKWKGTNFGTKSLDFQSDISSNNSSALRSDIKIEALSSNLAGLCSVDVEV-GRIQE 240
Query: 310 DDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETD--------EADKLSA 361
D K N NS + V + C G K++ S I + ++ + +AD +A
Sbjct: 241 DSCKLNTNSSETKVKSKFC-----YGEKEKERFSRILSCYVGSYNFHNFTTRTKADDPTA 295
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
+ R+I S + + G +++ + G+SFMLHQIRKM+G AVA+ R ++ +
Sbjct: 296 N--RQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNCASESLIQSA 353
Query: 422 LAKHSRIVLPLAPSEVLFLRANSFSVRTR 450
+K I +P+AP L+L F+ R
Sbjct: 354 FSKDVNITVPMAPEVGLYLDECFFTSYNR 382
>gi|302141694|emb|CBI18897.3| unnamed protein product [Vitis vinifera]
Length = 419
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 115/407 (28%), Positives = 183/407 (44%), Gaps = 73/407 (17%)
Query: 96 MQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME 155
MQ++ + TIEG+LE ALF +G + E + G+ ++ WARS+RTDKGV ++ ++ +
Sbjct: 1 MQKNPGA-KTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFY 59
Query: 156 IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG 215
I DP G L +R+N++LP I++F SF+ ++ C+ R+Y YL+P
Sbjct: 60 I-------DPPG--LVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIP----- 105
Query: 216 INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAV 275
+ A + SH D ++L E+ E S+ RK G + KR SK+ V
Sbjct: 106 ----VFALDPSSH-PDRESVLASVGSENELVKCLECSERGRKV--VGIMGKRKGESKNIV 158
Query: 276 FSRVEESEGEEDGFSKVEE-----------------------------SDGEEDLGIGGE 306
+ ++ S+V+E S+GE L G
Sbjct: 159 QLGIPSNDEAAIVNSEVQEEIKATSNNNNIDANNSISETIKEEAAKLSSEGENKLEKGSG 218
Query: 307 ISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRK 366
D++ + + + G H N H N ++ I+A + SA F
Sbjct: 219 FCYGDKERERFNRILG-HYVGTHNFH-------NFTTRIKA---------EDPSAQRF-- 259
Query: 367 IFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS 426
I S + G +V+ + G+SFMLHQIRKM+G AVA+ R + P +L +L K
Sbjct: 260 IVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDV 319
Query: 427 RIVLPLAPSEVLFLRA---NSFSVRTRPGVTRPEMQTMVESEEILKM 470
I +P AP L+L +S++ + R M+ E E KM
Sbjct: 320 NINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKM 366
>gi|254583001|ref|XP_002499232.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
gi|238942806|emb|CAR30977.1| ZYRO0E07106p [Zygosaccharomyces rouxii]
Length = 537
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 183/375 (48%), Gaps = 47/375 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G MQ + +L TIE EL TA +AG I ++N +L+K + R+
Sbjct: 74 KRKVAVMIGYCGTGYHG--MQHNPPNL-TIESELFTAFVEAGAISKANSTDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP + +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKLII------EDP---QIKEKINEKLPEGIRVWDIKRVNKAFDC 181
Query: 197 RRECNLRKYSYLLPA-EVIGINSQLTAAE-IDSHISDFNAILNEFEGEHPFHNYTERSKY 254
R+ C+ R Y YLLP +IG T + I+ + +L+E + F ++E K
Sbjct: 182 RKMCSSRWYEYLLPTYSLIGPKPGSTLYDTIEQGKQELPGVLDEDDESKQF--WSEVDKD 239
Query: 255 RRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGG-EISSDDEK 313
R+ + + K V ++ +G + + KV+ E+L IS + K
Sbjct: 240 AREQFSEDEL----QTIKSYVPPPKDQFDGTDPTYHKVKRYKQMENLHRRQYRISQEKLK 295
Query: 314 ANQNSMVS--GVHQEDCCNQHANGL-KDQNSSSVIRARWLYETDEADKLSASHFRKIFSC 370
+++M G H N H L KD SS + R++ E K+S F
Sbjct: 296 KFRSTMEQYLGAH-----NFHNFTLGKDFKESSAV--RYMKEI----KVSEP-----FVI 339
Query: 371 SCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVL 430
K E +V I I G+SFMLHQIRKM+ A + R P D ++ + ++ +
Sbjct: 340 GDAKTE------WVSIKIHGQSFMLHQIRKMISMATLMTRCGCPTDRISEAYGPQ-KLNI 392
Query: 431 PLAPSEVLFLRANSF 445
P AP+ L L + F
Sbjct: 393 PKAPALGLLLESPVF 407
>gi|346975818|gb|EGY19270.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 626
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 119/417 (28%), Positives = 181/417 (43%), Gaps = 68/417 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y GLQ+ DE TIEG+L A AG I ++N + +K + +R
Sbjct: 141 KRKVAVMVGYSGTGYYGLQINWDE---KTIEGDLFKAFITAGAISKANADDPKKSSLSRC 197
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I D D+ ++NAHLP I+V+ + + SF
Sbjct: 198 ARTDKGVHAAGNLISLKLIIEDD---------DIVDKINAHLPDQIRVWGLQRTSNSFSA 248
Query: 197 RRECNLRKYSYLLPAEVIGINSQ---------LTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ C+ R Y YLLP + + S + +A+ + DF + L + +G F
Sbjct: 249 YQACDSRWYEYLLPTYCL-LPSHPDSFLWKKLVESAQEKGYYDDFQSKLADMDG---FWA 304
Query: 248 YTERSKYR-----RKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLG 302
E + +P V +R AS+D S +++S D V +
Sbjct: 305 EVEEKAIKPILEQLEPQVRAEVLERIHASEDHPESALKKS-ALNDAMQVVPPA-----TA 358
Query: 303 IGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYET--DEADKLS 360
+ GE +S A S ++ + L+D ++ V +A+ Y+ + D+L
Sbjct: 359 VTGEATS----AEDTSTIATTGKTKNLGPVDFALRDMKNAYV-KAKRAYQVTPERLDQLQ 413
Query: 361 AS-------------HFRKIFSCSCGKLE-KSLGFGYVEISI----------SGESFMLH 396
A+ +K F K KS I I G+SFM+H
Sbjct: 414 AALDQYVGTYNFHNYTIQKSFKDPSAKRHIKSFQVNKTPIQIRDTQWVSIKVHGQSFMMH 473
Query: 397 QIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV 453
QIRKM+ A V R P + S + RI +P AP L L F +R V
Sbjct: 474 QIRKMISMATLVVRCATPLTRIKESYGE-DRIAIPKAPGLGLLLERPVFEGYSRKAV 529
>gi|449485147|ref|XP_004157082.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 107/419 (25%), Positives = 185/419 (44%), Gaps = 74/419 (17%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
NS+ K + +++KVA Y G Y+G+Q TIE +LE AL+ AG + E +
Sbjct: 43 NSAAPKKQRYKRRKVAXFFAYCGVGYQGMQKN---PGAKTIEADLEEALYLAGAVPEQDR 99
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
G ++ WARS+RTDKGV ++ ++ + I P + D R+N++L I++F
Sbjct: 100 GLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVD---------RLNSNLSPQIRIF 150
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
SF+ ++ C+ R+Y YL+P + N + + + N ++ E
Sbjct: 151 GYKRVTASFNAKKFCDRRRYVYLIPVFALDPNCHRDRESVKASLGSDNELVKCLE----- 205
Query: 246 HNYTERSKYRRKPHKTGRVSKRAKASKDAV---------FSRVEESEGEEDGFSKVEESD 296
+ER + G + KR K A+ + +E S+ + +G +E+S
Sbjct: 206 --CSERGR-----KVEGLIGKRNFEVKTAITESDISSNTVNAIEVSDVQANGV--LEDSA 256
Query: 297 GEED---------------LGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNS 341
D L +G E ++ E + + + G E ++ + K+++S
Sbjct: 257 TTSDSNKQTSVLVENTATELNVGSEGTAKSESSEMSGL--GSDSEIVVSKESVNGKEKSS 314
Query: 342 SSVI-----RARW---------------LYETDEADKLSASHFRKIFSCSCGKLEKSLGF 381
S +AR+ +A+ +A F F S + + + F
Sbjct: 315 GSFKYGEEEKARFNRILKHYVGTHNFHNFTTRTKAEDPAARRFIVSFDASAIVVVEGIEF 374
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
V+ + G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+L
Sbjct: 375 --VKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLYL 431
>gi|330793042|ref|XP_003284595.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
gi|325085509|gb|EGC38915.1| hypothetical protein DICPUDRAFT_45589 [Dictyostelium purpureum]
Length = 473
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 95/184 (51%), Gaps = 14/184 (7%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E RKKKVA+ +GY+G +Y G+Q L TIE ELE A+FKAGGI N KI
Sbjct: 63 EASRKKKVAVLLGYLGKNYAGMQKNP---GLRTIEEELEMAIFKAGGILPDNLYFQHKID 119
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
W R +RTDKGV +L ++ LKME+ P P ++ K +N LP +I VF I+
Sbjct: 120 WVRCARTDKGVSALRNVVSLKMEVGP------PELDEMVKALNKLLPEDIHVFKIMRVNN 173
Query: 193 SFDPRRECNLRKYSYLLPAEV----IGINSQLTAAEIDSHISD-FNAILNEFEGEHPFHN 247
SF + + R Y Y+ P N + + + N +L+ + G H FHN
Sbjct: 174 SFHAKNGVDARSYVYVCPTSAFEPKFATNKLVEPFKFTEETRETLNRVLSYYLGNHRFHN 233
Query: 248 YTER 251
YT R
Sbjct: 234 YTSR 237
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 19/167 (11%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
S FRKI C G V I++ GESFMLHQIRKM+G ++ RK + +D
Sbjct: 243 VSVFRKIIKFECSVPFILEGVEMVSINVIGESFMLHQIRKMIGCLMSFMRKGIFQDAQDK 302
Query: 421 SLA------------KHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEIL 468
A H + LP+AP L L F + + MVE++++
Sbjct: 303 ESAFDQIRKYIEATFYHQPLNLPVAPGAGLLLDHCIFRMWNEK-YKDIHGELMVENDDV- 360
Query: 469 KMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEV 515
E + V E++ L+ATK ++EWIE +P E L ++
Sbjct: 361 ----EQFRKVVFGEIAS-LEATKREFSEWIETKLDPHPLPYEILHKI 402
>gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 308
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 17/183 (9%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K+K A+ YVG Y G MQR+ + TIEGELE A+ +AGGI ++N G+ K+ W R
Sbjct: 1 KKRKCAVTFAYVGAGYAG--MQRNP-GVRTIEGELEGAIARAGGISDANAGDFAKVQWTR 57
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV ++ ++ LKM + P + +R+NA LP +VF I F+
Sbjct: 58 AARTDKGVSAVGQVVALKMVLEPSG---------MVERINAALPERFEVFGIDRVTGGFN 108
Query: 196 PRRECNLRKYSYLLPAEVIGIN-----SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ C+ R+Y Y++P N + A + S + +L + G H FHNYT
Sbjct: 109 AKTMCDRRRYEYVIPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYCGTHNFHNYTV 168
Query: 251 RSK 253
+ K
Sbjct: 169 KVK 171
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S C + G +V + G+SFMLHQIRK++GT +AV R L D +L
Sbjct: 179 RYIISFECSAPFEVEGEQFVRCQVVGQSFMLHQIRKLIGTMLAVVRGELTEDDQKFALLT 238
Query: 425 HSRIVLPLAPSEVLFL 440
H + P+AP LFL
Sbjct: 239 HEFVPTPMAPELGLFL 254
>gi|403356760|gb|EJY77983.1| tRNA pseudouridine synthase putative [Oxytricha trifallax]
Length = 497
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 109/416 (26%), Positives = 192/416 (46%), Gaps = 71/416 (17%)
Query: 61 TRPTPNSSDDKWEPVRKK--------KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELET 112
T N +D K E + KK +VA+ VGY G+++ G Q ++ ++E E+E
Sbjct: 37 TEQNTNQTDKKDENIDKKQESKLPKCRVAMIVGYNGSNFCGSQKN---PNIRSVEEEIEK 93
Query: 113 ALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK 172
AL++ G I E NYG+L+KI W R++RTDK VH++ K+ I D +D+ + + L
Sbjct: 94 ALYRLGRISEYNYGDLKKIGWNRATRTDKRVHAIQNCFSFKIHISKDENEDEDFRVVL-- 151
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI----------GINSQLTA 222
N LP +I +F+I+ S F+ + + R+YSY LP ++ GIN ++ A
Sbjct: 152 --NKELPEDITIFAIIRSSNRFNSKLNADDREYSYYLPTFMLKSIKQGWYGSGINRKIQA 209
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTERSKY-RRKPHKTGRVSKRAKASKDAVFSRVEE 281
A++ + ++ ++ E E + + K+ RR P+K K ++D + +
Sbjct: 210 AQLRGNKAE--GVVAGTEEEKKEDDKPKGIKFIRRDPNK--------KKNEDGL-----D 254
Query: 282 SEGEEDGFSKVEES-------------DGEEDLGIGGEISSDDEK--ANQNSMVSGVHQE 326
++ +E+G + VE+ E DL +S +D + + GV
Sbjct: 255 NDDDEEGNNDVEQYQDLYLFRNIDHIPQSEFDLLYSYRLSKEDHERVIALFKLFLGVK-- 312
Query: 327 DCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIF--SCSCGKLEKSLGFGYV 384
K N + +IRA + L AS F + + E ++
Sbjct: 313 ----------KYHNYTKLIRAHMMKAQRFMMILEASDFMYVNYETNEVTNKEDPKAIEFL 362
Query: 385 EISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ G+SF+ +QIRKM+G + V R L + +L + + + + LAP + L L
Sbjct: 363 HFALKGQSFLYNQIRKMIGVIIQVFRGDLDDKFIPNTL-RDNIVNVALAPGDGLLL 417
>gi|224085970|ref|XP_002307759.1| predicted protein [Populus trichocarpa]
gi|222857208|gb|EEE94755.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 119/416 (28%), Positives = 191/416 (45%), Gaps = 64/416 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+A+ + Y G Y+G+Q TIEG+LE ALF AG + E + G ++ WARS+
Sbjct: 1 RKIAIFLTYCGVGYQGMQKNP---GAKTIEGDLEEALFHAGAVPEHDRGIPKRYDWARSA 57
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV ++ ++ + I DP G L +R++++L I++F SF+ +
Sbjct: 58 RTDKGVSAVGQVVSGRFYI-------DPPG--LVERLHSNLSPQIRIFGYKRVTGSFNAK 108
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ C+ R+Y YL+P V +N SH D ++L + S+ RK
Sbjct: 109 KFCDRRRYVYLIP--VFALNPC-------SH-RDRESVLASLGSGSELVKCLQCSERGRK 158
Query: 258 PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQN 317
G V KR+ SK V S E ++D K S+ +E++ I SS+ E AN N
Sbjct: 159 V--VGAVGKRSFESKSDV-SPTEIWSNDKDTALK---SEIKEEVSI----SSNSEDANAN 208
Query: 318 SMVSGVHQEDCCNQHANGLKDQNSSS----VIRARWLYETDEADK--------LSASHF- 364
+ +++ NG D+N+ S + + + Y E ++ L + +F
Sbjct: 209 PEI----KDEIMVSIENG-DDKNTKSEEEAIKGSGFCYGEKEKERFNRILNYYLGSHNFH 263
Query: 365 --------------RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
R I S G +V+ + G+SFMLHQIRKM+G AVA+ R
Sbjct: 264 NFTTRTKAEDPSAQRYIISFDAKTTVAVEGIEFVKCEVVGQSFMLHQIRKMIGVAVAIMR 323
Query: 411 KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE 466
++ +L K+ I +P AP L+L F+ + E +M + EE
Sbjct: 324 NCASESLIQTALQKNVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEELSMKDYEE 379
>gi|428673414|gb|EKX74327.1| tRNA pseudouridine synthase, putative [Babesia equi]
Length = 468
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 109/383 (28%), Positives = 166/383 (43%), Gaps = 71/383 (18%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQ-----RDEHSLSTIEGELETALFKAGGIRESNYGNL- 128
V K K A+ GY+GT Y G Q Q D + + TIEG +E+AL + G I E Y NL
Sbjct: 83 VPKAKYAIAFGYLGTRYHGYQKQVEYGTGDMNKVETIEGTMESALVEIGAINEV-YRNLP 141
Query: 129 QKIAWARSSRTDKGVHSLATMICLKMEIP---PDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
K+ ++SSRTDKGVH+ T I + EIP + + + I +++N LP +I+ F
Sbjct: 142 YKLQLSKSSRTDKGVHAGCTYIAGRFEIPELEEEVGTKEEFFI---RKLNDALPNDIRCF 198
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
I+ + FD R C+ RKY Y++P +++ L + S
Sbjct: 199 QIVRVTKGFDARTMCSKRKYEYIIPEKIL-----LKRYKFGS------------------ 235
Query: 246 HNYTERSKYRRKPHKTGRVSKRAKASKDAV-FSRVEESEGEEDGFSKVEESDGEEDLGIG 304
KY+ + + + SKD + S+VE + GF + D D+ +
Sbjct: 236 ------DKYKELHNNLSSLFSQYDKSKDPIKLSKVEGEYNMDHGFYE----DSTLDIELI 285
Query: 305 GEISSDDEKANQNSMVSGVH--QEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSAS 362
EI M G H Q Q G Q R++++T ++
Sbjct: 286 KEIM---------DMYVGTHDFQNFTVRQKVQGSTTQ--------RYIHKTKVNIFTLSN 328
Query: 363 HFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
F +I G G V I+I G+SF+ +QIRKM+ A+ L P+ + SL
Sbjct: 329 IFHQIKKDVIGN-----GQNVVRITIVGQSFLYNQIRKMISMAIETYLNLAPKSTIAFSL 383
Query: 423 AKHSRIVLPLAPSEVLFLRANSF 445
+ + +APSE L L F
Sbjct: 384 FNNRILNTNIAPSEGLVLHHPYF 406
>gi|224145482|ref|XP_002325659.1| predicted protein [Populus trichocarpa]
gi|222862534|gb|EEF00041.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 23/133 (17%)
Query: 401 MVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGV-TRPEMQ 459
M+GTAVAVKR++ PRD++ LSL+K SRI+LPLAP+EVL R N F + G RPEM+
Sbjct: 1 MLGTAVAVKREIFPRDLIMLSLSKFSRIILPLAPTEVLISRGNDFPLIQNSGEGKRPEME 60
Query: 460 TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAW 519
MVESEE ++ + L W EW+ENL K+TS+ + QLDEVRNAW
Sbjct: 61 RMVESEE--------FSMLPL-------------WKEWVENLHKYTSV-HAQLDEVRNAW 98
Query: 520 QLWKEKRFESKTI 532
++WKE SK+I
Sbjct: 99 KVWKENFQISKSI 111
>gi|66803188|ref|XP_635437.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60463746|gb|EAL61924.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 596
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 100/196 (51%), Gaps = 30/196 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RKKKVA+ +GY GT+Y G+Q L T+E ELE ALF+ GGI N QK+ W R
Sbjct: 138 RKKKVAIILGYSGTNYAGMQKN---PGLKTVEEELEHALFRTGGISPDNMYYQQKVDWIR 194
Query: 136 SSRTDKGVHSLATMICLKMEI-PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+RTDKGV ++ ++ LKME+ PPD G+ +A +N LP++I VF I+ SF
Sbjct: 195 CARTDKGVSAIRNVVSLKMEMGPPDF-----EGMKIA--LNKELPKDITVFHIMRVNNSF 247
Query: 195 DPRRECNLRKYSYLLPAEVIG----------INSQLTAAEIDSH---------ISDFNAI 235
+ + R Y Y+ P V + E ++ +S N +
Sbjct: 248 HAKNAVDARSYIYVTPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKV 307
Query: 236 LNEFEGEHPFHNYTER 251
L+ + G H FHNYT R
Sbjct: 308 LSFYLGNHRFHNYTSR 323
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
S FRKI S C + G V I++ GESFMLHQIRKM+G ++ RK + D T
Sbjct: 329 VSVFRKIHSFVCSEPFVLEGVEMVSINVVGESFMLHQIRKMIGCLISFIRKGMFEDCETR 388
Query: 421 SLA------------KHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEIL 468
A +H+ + LP+AP L L F+ + + + +ES+++
Sbjct: 389 DQAFDQIKAYINSTFEHTPLNLPMAPGAGLLLDYCIFNEWNKNN-SSIHGELKIESDQVE 447
Query: 469 KMVDEFYTSVTLPEVSKFLDATKSPWTEWIE-NLEKFTSIPNEQLDE 514
+ Y + L L++TK + WIE NL+ + +P +DE
Sbjct: 448 EFKKTIYREIAL------LESTKKEFKNWIEKNLDPY-PLPYNLMDE 487
>gi|168058399|ref|XP_001781196.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667349|gb|EDQ53981.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 89/135 (65%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+KVAL + Y G Y+G MQR+ ++ TIEGELE ALF+A I E N+G+++K+ W R
Sbjct: 55 RKRKVALILAYCGAAYQG--MQRNPGAI-TIEGELEQALFRADAIAECNFGDMRKVDWMR 111
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV ++ ++ ++ I DP G L +RVN HLP++I+VF +F+
Sbjct: 112 AARTDKGVSAIGQIVSARLVI-------DPPG--LVERVNQHLPKDIRVFGYTRVTSNFN 162
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YL+P
Sbjct: 163 AKQMCDKRRYEYLVP 177
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + GK+ + G +V ++ G+SFMLHQIRKM+GTA+A+ R +P I+ +L
Sbjct: 350 RYIISFTAGKVIEVQGMQFVPCTVVGQSFMLHQIRKMIGTAIAIMRGCVPDSIIDFALQS 409
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE-ILKMVDE-FYTSVTLPE 482
+ + P+AP LFL +S + E + EE ILK E Y + E
Sbjct: 410 KNDVNTPMAPELGLFLDECFYSAYNKKFSNSHEKLSQEGYEEQILKFKHEVIYPHIATTE 469
Query: 483 VSKFLDATKSPWTEWIEN 500
D T + W + +
Sbjct: 470 AK---DGTMALWLHGLND 484
>gi|328350723|emb|CCA37123.1| tRNA pseudouridine synthase A [Komagataella pastoris CBS 7435]
Length = 516
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 51/378 (13%)
Query: 73 EPVR-KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
EP R KKKVA +GY GT Y G+Q+ + TIEG+L A ++G I N +L+K
Sbjct: 84 EPRRPKKKVACLIGYCGTGYHGMQLNPPQ---KTIEGDLFEAFVESGAISRDNSNDLKKS 140
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
++ R++RTDKGVH+ +I LKM I + D+ +++N+ LP I+V+ +
Sbjct: 141 SFMRAARTDKGVHAAGNVISLKMIIEDE---------DILEKINSKLPPTIRVWGYERTN 191
Query: 192 RSFDPRRECNLRKYSYL------LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
++FD R+ C+ R Y YL LP + NS L +++ ++ EG +
Sbjct: 192 KNFDCRKMCSSRIYEYLMPTFSFLPPKP---NSPLARQIKEANEETPGVTRDDPEGSKWW 248
Query: 246 HNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDL---G 302
+ E K H +G K + +++A ++ K +SD E D+
Sbjct: 249 ADVLE------KLHASGITDKDIQDAQEATINK-----------EKNNDSDDEPDMLLEE 291
Query: 303 IGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSAS 362
I +I + +A + +S E + N + + + SA+
Sbjct: 292 IVRKIKQTENQARREYRISKERLELVNKAMQMYIGHHNFHNFTLGKHFKDA------SAN 345
Query: 363 HFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
+ K + S + + G +V I I G+SFMLHQIRKM+ A V R P +T +
Sbjct: 346 RYMKEITVSEPFVIE--GTEWVSIKIHGQSFMLHQIRKMIAMAALVVRTGCPLGRITEAF 403
Query: 423 AKHSRIVLPLAPSEVLFL 440
+ SRI +P AP+ L L
Sbjct: 404 -QSSRINIPKAPALGLLL 420
>gi|254566437|ref|XP_002490329.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
gi|238030125|emb|CAY68048.1| tRNA:pseudouridine synthase, introduces pseudouridines at positions
26-28, 34-36, 65, and 67 of tRNA [Komagataella pastoris
GS115]
Length = 509
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 176/378 (46%), Gaps = 51/378 (13%)
Query: 73 EPVR-KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
EP R KKKVA +GY GT Y G+Q+ + TIEG+L A ++G I N +L+K
Sbjct: 77 EPRRPKKKVACLIGYCGTGYHGMQLNPPQ---KTIEGDLFEAFVESGAISRDNSNDLKKS 133
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
++ R++RTDKGVH+ +I LKM I + D+ +++N+ LP I+V+ +
Sbjct: 134 SFMRAARTDKGVHAAGNVISLKMIIEDE---------DILEKINSKLPPTIRVWGYERTN 184
Query: 192 RSFDPRRECNLRKYSYL------LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
++FD R+ C+ R Y YL LP + NS L +++ ++ EG +
Sbjct: 185 KNFDCRKMCSSRIYEYLMPTFSFLPPKP---NSPLARQIKEANEETPGVTRDDPEGSKWW 241
Query: 246 HNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDL---G 302
+ E K H +G K + +++A ++ K +SD E D+
Sbjct: 242 ADVLE------KLHASGITDKDIQDAQEATINK-----------EKNNDSDDEPDMLLEE 284
Query: 303 IGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSAS 362
I +I + +A + +S E + N + + + SA+
Sbjct: 285 IVRKIKQTENQARREYRISKERLELVNKAMQMYIGHHNFHNFTLGKHFKDA------SAN 338
Query: 363 HFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
+ K + S + + G +V I I G+SFMLHQIRKM+ A V R P +T +
Sbjct: 339 RYMKEITVSEPFVIE--GTEWVSIKIHGQSFMLHQIRKMIAMAALVVRTGCPLGRITEAF 396
Query: 423 AKHSRIVLPLAPSEVLFL 440
+ SRI +P AP+ L L
Sbjct: 397 -QSSRINIPKAPALGLLL 413
>gi|19075946|ref|NP_588446.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe 972h-]
gi|74627010|sp|O94396.1|PUS1_SCHPO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|4008551|emb|CAA22472.1| tRNA pseudouridine synthase Lsp1 [Schizosaccharomyces pombe]
gi|6469502|emb|CAB61835.1| pseudouridine synthase [Schizosaccharomyces pombe]
Length = 534
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 184/408 (45%), Gaps = 57/408 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA VGY G+ Y G+Q+ TIEG+L A KAG + N + +K+A AR+
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPS---KTIEGDLFDAFVKAGAVSSYNADDPKKVALARA 99
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + + L ++VN HLP +I+++ ++ + SF+P
Sbjct: 100 ARTDKGVHAAGNVISLKLIMEDEK---------LIEKVNEHLPPSIRLWDVIRTINSFNP 150
Query: 197 RRECNLRKYSYLLP-------------AEVIGINSQLTAAEIDS-HISDFNAILNEFEGE 242
R C R Y Y++P I NS + A I+ +I+ + L EG+
Sbjct: 151 RTYCESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGK 210
Query: 243 HPFHNYTERSK-----YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDG 297
+ +Y +K Y + P G V+ +K A + E ++G E G S D
Sbjct: 211 EFWDDYDIAAKEILSLYEQDPE--GFVNPYSKRGA-AALANSENNKGSEAGVSAKTNPDM 267
Query: 298 EED-LGIGGEISSDD--EKANQNSMVSGVHQEDCCNQHANGLKDQNSS-SVIRARWLYET 353
+ D I E D E + S + ++ + +H LK +N S R + ET
Sbjct: 268 DSDSSAIVNEFLKPDSVEDESAGSKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET 327
Query: 354 DEADKLSASHFRKIFSCSCGKLEKS-------------LGFG---YVEISISGESFMLHQ 397
++ H F+ +K+ G ++ + G+SFMLHQ
Sbjct: 328 --LNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSFMLHQ 385
Query: 398 IRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
IRKM+ A+ V R P + + + K ++I +P P L L + F
Sbjct: 386 IRKMIALAILVVRTGCPVERIQDAFKK-TKINIPKGPGFGLLLESPFF 432
>gi|328871318|gb|EGG19689.1| hypothetical protein DFA_00267 [Dictyostelium fasciculatum]
Length = 568
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 99/182 (54%), Gaps = 8/182 (4%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K V + YVGT Y GL+ + T+E LE ALF +G I +N+G+ ++ W RS
Sbjct: 129 KTPVNMLFAYVGTGYHGLEFHMTDQDYPTLENCLERALFLSGMILPTNFGDPSRLNWRRS 188
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVHS++T+I +EI D +N++LP +++ S+ +++SFDP
Sbjct: 189 SRTDKGVHSMSTIIKANLEIDRSRMLTPEKIADYVALINSNLPDALRIISMEMTKKSFDP 248
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR 256
RR+ R Y Y+LP + +G + T EI+ IL F G +HN+T + +
Sbjct: 249 RRQGIARTYHYVLPKKYLG--DRYTLDEINQ------IILPMFIGNFSYHNFTLKRRTYI 300
Query: 257 KP 258
+P
Sbjct: 301 RP 302
>gi|328876653|gb|EGG25016.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 542
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 96/181 (53%), Gaps = 14/181 (7%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+KKK+A VGY GT+Y G+Q STIE ELE A FK G I +N+ + +KI W R
Sbjct: 114 KKKKIAFCVGYSGTNYCGMQKN---WGYSTIEEELEKACFKTGSISPNNFYSQRKIDWIR 170
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
+RTDKGV ++ M+ K+E P P +L +N+HLP +IKVF I SF
Sbjct: 171 CARTDKGVSAVRNMVSCKLEYDP------PTLEELKNAINSHLPEDIKVFGIKRVNNSFH 224
Query: 196 PRRECNLRKYSYLLPA----EVIGINSQLTAAEID-SHISDFNAILNEFEGEHPFHNYTE 250
+ + R Y Y+ P V + + + D + S N++L F G H FHNYT
Sbjct: 225 AKNCVDGRSYLYITPTFAFEPVHATSGRPETYKFDETERSRVNSMLAMFLGTHKFHNYTS 284
Query: 251 R 251
R
Sbjct: 285 R 285
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 20/152 (13%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLL------ 413
SA +F CS + + G +V I+I G SFMLHQIRKM+G ++V R+
Sbjct: 292 SAKRTMSLFQCSEPFVME--GIEFVSINIIGGSFMLHQIRKMIGFVMSVMRRGFFWEKNN 349
Query: 414 -------PRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEE 466
R I+T +L H + LP+AP L L A F V T+ + + +E E
Sbjct: 350 DTESLDYVRKIITATLC-HRQFNLPMAPGTGLMLDACLFDVWTKKFKS---VHGDLEFSE 405
Query: 467 ILKMVDEFYTSVTLPEVSKFLDATKSPWTEWI 498
+ +++F ++ L+ K +T WI
Sbjct: 406 AKEEMEQFKKEKIFKQIV-LLEKEKKEFTNWI 436
>gi|119192942|ref|XP_001247077.1| tRNA pseudouridine synthase 1, putative [Coccidioides immitis RS]
gi|392863687|gb|EAS35543.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 597
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 180/412 (43%), Gaps = 78/412 (18%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK P K+KVA+ +GY GT Y G+QM E TIEGE+ AL AG I ++N + +
Sbjct: 108 DKRRP--KRKVAVLLGYSGTGYHGMQMSAKE---KTIEGEIFPALVAAGAISKANAMDPK 162
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K ++ R +RTDKGVH+ +I LK+ I +DP DL +VN L I+++ I P
Sbjct: 163 KSSFVRCARTDKGVHAAGNVISLKLII------EDP---DLVNKVNNILSPQIRIWGIEP 213
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA--ILNEFEGEHPFHN 247
+ + F + C+ R Y YL+P + H S F A +L E E +
Sbjct: 214 TNKGFSCYQFCDSRIYEYLIPTHCF----------LPPHPSTFLAKKLLEAAEKEGDIGD 263
Query: 248 YTERS------------KYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
Y +R +Y R T S R K V+ES +D ++ +
Sbjct: 264 YKKRQEEVLSYWEDVDHEYIRPILSTLPESTRLK---------VQESLCIKDRSQSIQNA 314
Query: 296 DGEEDLGIGGEISS-DDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETD 354
+G+E+L +I++ DEK N ED Q N + ++ +A+ Y
Sbjct: 315 EGKEELDCSSDINAVKDEKEGGNLTPGNSDSED---QKINEVIKTVRAAYFKAKKAYRIH 371
Query: 355 EAD----------KLSASHF-----RKIF-SCSCGKLEKSL----------GFGYVEISI 388
A + +F +K F S ++ KS G ++ + +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGTEWLSLKV 431
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
G+SFM+HQIRKMV A V R +T S +I +P AP L L
Sbjct: 432 HGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQ-KIPIPKAPGLGLLL 482
>gi|323449394|gb|EGB05282.1| hypothetical protein AURANDRAFT_12283 [Aureococcus anophagefferens]
Length = 239
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 18/189 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+AL +GY G +Y GLQ Q E L TIE L+ AL +AG + E N G+L KI W+R+
Sbjct: 5 KRKLALLLGYRGANYYGLQKQSKESDLPTIELALQEALNRAGAVHEGNQGDLSKIGWSRA 64
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDK V + ++ K+E+ D D P L +R+N LP +IKVF + + F+
Sbjct: 65 ARTDKRVSAARQVVSAKLEVEND---DVPA---LLERLNGELPDDIKVFDAVRVIKGFNC 118
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAA------EIDSH------ISDFNAILNEFEGEHP 244
++ C+ R Y+YLLP ++ + + AA + H + L + G
Sbjct: 119 KQSCDRRHYTYLLPTFLLAPDEAIDAAFDAVAQRLAPHRAAPTLLERLRGFLAAYVGTRK 178
Query: 245 FHNYTERSK 253
+HN+T + K
Sbjct: 179 YHNFTNKLK 187
>gi|320033682|gb|EFW15629.1| tRNA pseudouridine synthase [Coccidioides posadasii str. Silveira]
Length = 597
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 120/412 (29%), Positives = 180/412 (43%), Gaps = 78/412 (18%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK P K+KVA+ +GY GT Y G+QM E TIEGE+ AL AG I ++N + +
Sbjct: 108 DKRRP--KRKVAVLLGYSGTGYHGMQMSAKE---KTIEGEIFPALVAAGAISKANAMDPK 162
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K ++ R +RTDKGVH+ +I LK+ I +DP DL +VN L I+++ I P
Sbjct: 163 KSSFVRCARTDKGVHAAGNVISLKLII------EDP---DLVNKVNNILSPQIRIWGIEP 213
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA--ILNEFEGEHPFHN 247
+ + F + C+ R Y YL+P + H S F A +L E E +
Sbjct: 214 TNKGFSCYQFCDSRIYEYLIPTHCF----------LPPHPSTFLAKKLLEAAEKEGDIGD 263
Query: 248 YTERS------------KYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
Y +R +Y R T S R K V+ES +D ++ +
Sbjct: 264 YKKRQEEVLSYWEDVDHEYIRPILSTLPESTRLK---------VQESLCIKDRSQSIQNA 314
Query: 296 DGEEDLGIGGEISS-DDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETD 354
+G+E+L +++S DEK N ED Q N + ++ +A+ Y
Sbjct: 315 EGKEELDCSSDVNSVKDEKEGGNLNPGNSDSED---QKINEVIKTVRAAYFKAKKAYRIH 371
Query: 355 EAD----------KLSASHF-----RKIF-SCSCGKLEKSL----------GFGYVEISI 388
A + +F +K F S ++ KS G ++ + +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGTEWLSLKV 431
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
G+SFM+HQIRKMV A V R +T S +I +P AP L L
Sbjct: 432 HGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQ-KIPIPKAPGLGLLL 482
>gi|448091329|ref|XP_004197304.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|448095890|ref|XP_004198335.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359378726|emb|CCE84985.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
gi|359379757|emb|CCE83954.1| Piso0_004551 [Millerozyma farinosa CBS 7064]
Length = 549
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 176/372 (47%), Gaps = 32/372 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA +GY GT Y G+Q+Q + + + TIEG+L A AG I N +L+K + R+
Sbjct: 68 KKKVACMIGYCGTGYNGMQIQNNPN-IETIEGDLFKAFVAAGAISPENADDLKKNGFMRA 126
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I K+ I + D+ +++NA LP I+V+ I + +SFD
Sbjct: 127 ARTDKGVHAAGNVISCKLIIEDE---------DIIEKINAQLPDQIRVWGIERTNKSFDC 177
Query: 197 RRECNLRKYSY------LLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R+ C+ R Y Y LLP + + ++L E + ++ I+ + E + T
Sbjct: 178 RKMCSSRVYEYLLPTYSLLPPKPRSVLAELLRKEKE----NYPEIMRKDEEGEKWWEETL 233
Query: 251 RSKYRR--KPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEIS 308
++ + P + K ++S + ++ EE EG+E +K+ + DG G I
Sbjct: 234 QAVFDSGISPDDLAKAQKILESSGSSGSNKAEE-EGKEK--TKLYDDDGNITEA-GKLIK 289
Query: 309 SDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIF 368
S N+ + E N L + L +T + D S + +K+
Sbjct: 290 SIKSVENKRRRAYNISTERL-NIFREALNQYEGAHNFHNFTLGKTFK-DPSSVRYMKKLT 347
Query: 369 SCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRI 428
+E G +V I I G+SFMLHQIRKM+ A V R P + ++ ++
Sbjct: 348 VSDPFVIE---GTEWVSIKIHGQSFMLHQIRKMIAMAALVIRTGCPLERISDCFGP-IKV 403
Query: 429 VLPLAPSEVLFL 440
+P AP+ L L
Sbjct: 404 NIPKAPALGLLL 415
>gi|302834750|ref|XP_002948937.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f.
nagariensis]
gi|300265682|gb|EFJ49872.1| hypothetical protein VOLCADRAFT_104122 [Volvox carteri f.
nagariensis]
Length = 669
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +AL VGYVGT ++GLQ+ R ST+E LE A+F+AG I ESN+G+L+K+ W+R+
Sbjct: 219 KRSIALHVGYVGTAFKGLQVNRSGAPDSTVEEVLERAVFEAGLIAESNFGDLKKVKWSRN 278
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD-DPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
SRTDKGVHS++T++ L++ + D D DP G+++A +N LP ++VFS Q+ F+
Sbjct: 279 SRTDKGVHSVSTVVGLRVLLRGDEGFDLDPEGLEVAADLNTRLPPQVRVFSAQRVQKKFN 338
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 326 EDCCNQHANGLKDQNSSSVIRA-RWLYET--DEADKLSASHFRKIFSCSCGKLEKSL--G 380
ED + A D +++ RWLYE D+ D+++ HFR I S + + G
Sbjct: 422 EDGATEGAESSDDDGPGRWVQSCRWLYEKSEDKRDRVTVRHFRTITSFTADDPAPLVPGG 481
Query: 381 FGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
V + + G SFMLHQIR M+G A+AV R LP +L SLA +R+ +P AP L L
Sbjct: 482 VPCVRLRVRGMSFMLHQIRHMIGGALAVARGSLPLPLLRASLAGQARVTVPRAPPHTLIL 541
Query: 441 RANSF 445
+F
Sbjct: 542 AGCTF 546
>gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
Length = 385
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/181 (34%), Positives = 96/181 (53%), Gaps = 15/181 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K+KVAL +G+ G Y G+Q R TIE +L ALFKAG I E+ + QK+A+ R
Sbjct: 44 KKRKVALLLGFCGAGYFGMQRNR---GTKTIEEDLINALFKAGAIPEAAKEHEQKMAFQR 100
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
+SRTDKGVH+ A ++ KM + D+ ++N+HLPR I+VF + F+
Sbjct: 101 ASRTDKGVHAAAQVVSFKMFVVD----------DVIAKINSHLPREIRVFGHFRVTKGFN 150
Query: 196 PRRECNLRKYSYLLPAEVIGINSQ--LTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
+ C+ R Y Y++P + + I++ I IL + G FHN+T +
Sbjct: 151 SKTACDARTYKYVMPTYAFANKEKKNMYILVIEATIKHVRDILAMYVGTRNFHNFTSKKA 210
Query: 254 Y 254
Y
Sbjct: 211 Y 211
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 351 YETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
YE D SA + F C + +L F V +++ G+SFMLHQIRKM+G + + R
Sbjct: 211 YEDD-----SAKRYIMQFDCGLPFVRNNLEF--VTLTVKGQSFMLHQIRKMIGLMIGIVR 263
Query: 411 KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVES----EE 466
+ + + K R+ +P AP L L + R + R + + +++ +E
Sbjct: 264 GDATIEAMEKAWEK-DRVDIPRAPGLGLMLYQLHYHAYNRK-IERLGIHSAIDNTIFDKE 321
Query: 467 ILKMVDEFYTS-VTLPEVSKFLDATKSPWTEWIENL 501
I K DE + E +F + +W+E+L
Sbjct: 322 IEKFTDECINEHIIQKETKEFC------FLKWLESL 351
>gi|299469782|emb|CBN76636.1| tRNA Pseudouridine Synthase [Ectocarpus siliculosus]
Length = 677
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 9/157 (5%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
PN KKKVAL + Y G +Y+GLQ+ + TIE ELE AL+ AG I + N
Sbjct: 178 PNGEGGVASSSSKKKVALLISYWGNNYQGLQINK---GARTIEAELELALYLAGTISKDN 234
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+GN +K++W+R+ RTDKGVH+ A +I +K+ D + + +++N +LP +I+
Sbjct: 235 FGNPRKVSWSRAGRTDKGVHAAAQVISVKLTYLNDGER------ETVEKINKYLPDDIRA 288
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLT 221
I + +SFD R C+ R+Y Y++P V+ + +T
Sbjct: 289 VDIRRAPKSFDSRTRCSGRRYEYIMPTYVLAPKAYVT 325
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 12/89 (13%)
Query: 362 SHFRKIFSCSCGKLEKSL---------GFGYVEISISGESFMLHQIRKMVGTAV-AVKRK 411
++ +K SC +L S G ++ +++ G+SF++HQIRKMV + V V+ +
Sbjct: 522 TNHKKATDASCKRLITSFTASDPFEHEGMEWIRLTVGGQSFIMHQIRKMVASTVDRVRGQ 581
Query: 412 LLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
P D L + +I L +APS+ L+L
Sbjct: 582 SNPEDFTKSFLPE--KINLGIAPSDGLYL 608
>gi|328873726|gb|EGG22093.1| hypothetical protein DFA_01983 [Dictyostelium fasciculatum]
Length = 604
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 9/174 (5%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K VA+ YVGT + GL+ +E +E LE ALF +G I +N+G++ +I W+R
Sbjct: 152 QKTPVAMLFSYVGTGHFGLEYTYEE-KYPALENYLEKALFLSGMILPTNFGDVTRIKWSR 210
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
SSRTDKGVHSL+T+I + I + + ++N++LP + + S+ + RSF
Sbjct: 211 SSRTDKGVHSLSTIIGASILINREKIQTKEGVRAYIDQINSYLPPTLHIVSMATTSRSFM 270
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
PRR+ + R Y Y+LP + +G +Q T EI+ IL+ F G + +HN+T
Sbjct: 271 PRRQTSSRTYHYVLPKKFLG--NQFTLQEINE------KILSLFIGTNSYHNFT 316
>gi|303312455|ref|XP_003066239.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240105901|gb|EER24094.1| tRNA pseudouridine synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 597
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 180/412 (43%), Gaps = 78/412 (18%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK P K+KVA+ +GY GT Y G+QM E TIEGE+ AL AG I ++N + +
Sbjct: 108 DKRRP--KRKVAVLLGYSGTGYHGMQMSAKE---KTIEGEIFPALVAAGAISKANAMDPK 162
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K ++ R +RTDKGVH+ +I LK+ I +DP DL +VN L I+++ I P
Sbjct: 163 KSSFVRCARTDKGVHAAGNVISLKLII------EDP---DLVNKVNNILSPQIRIWGIEP 213
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA--ILNEFEGEHPFHN 247
+ + F + C+ R Y YL+P + H S F A +L E E +
Sbjct: 214 TNKGFSCYQFCDSRIYEYLIPTHCF----------LPPHPSTFLAKKLLEAAEKEGDIGD 263
Query: 248 YTERS------------KYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEES 295
Y +R +Y R T S R K V+ES +D ++ +
Sbjct: 264 YKKRQEEVLSYWEDVDHEYIRPILSTLPESTRLK---------VQESLCIKDRSQSIQNA 314
Query: 296 DGEEDLGIGGEISS-DDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETD 354
+G+E+L ++++ DEK N ED Q N + ++ +A+ Y
Sbjct: 315 EGKEELDCSSDVNAVKDEKEGGNLNPGNSDSED---QKINEVIKTVRAAYFKAKKAYRIH 371
Query: 355 EAD----------KLSASHF-----RKIF-SCSCGKLEKSL----------GFGYVEISI 388
A + +F +K F S ++ KS G ++ + +
Sbjct: 372 PARLARVQEVLDLYIGTRNFHNYTIQKTFRDASARRVIKSFNISKDPIIIDGTEWLSLKV 431
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
G+SFM+HQIRKMV A V R +T S +I +P AP L L
Sbjct: 432 HGQSFMMHQIRKMVAMAALVVRCGTDPQRITQSYGPQ-KIPIPKAPGLGLLL 482
>gi|146412075|ref|XP_001482009.1| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA +GY GT Y G+Q+Q + + TIEG+L A KAG I N +L+K A+ R+
Sbjct: 28 KKKVACMIGYCGTGYNGMQIQNNP-DVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRA 86
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I K+ I D+ +R+N+HLP I+V+ I + +SFD
Sbjct: 87 ARTDKGVHAAGNVISCKLIIEDQ---------DILQRINSHLPDQIRVWGIERTNKSFDC 137
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 138 RKMCSSRVYEYLLP 151
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I I G+SFMLHQIRKM+ AV V R P + ++I +P AP+ L
Sbjct: 309 GTEWVSIKIHGQSFMLHQIRKMIAMAVLVVRTGCPITRIKDCFGP-TKINIPKAPALGLL 367
Query: 440 L 440
L
Sbjct: 368 L 368
>gi|190349084|gb|EDK41674.2| hypothetical protein PGUG_05772 [Meyerozyma guilliermondii ATCC
6260]
Length = 477
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 10/134 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA +GY GT Y G+Q+Q + + TIEG+L A KAG I N +L+K A+ R+
Sbjct: 28 KKKVACMIGYCGTGYNGMQIQNNP-DVKTIEGDLFDAFVKAGAISPENADDLKKNAFMRA 86
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I K+ I D+ +R+N+HLP I+V+ I + +SFD
Sbjct: 87 ARTDKGVHAAGNVISCKLIIEDQ---------DILQRINSHLPDQIRVWGIERTNKSFDC 137
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 138 RKMCSSRVYEYLLP 151
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I I G+SFMLHQIRKM+ AV V R P + ++I +P AP+ L
Sbjct: 309 GTEWVSIKIHGQSFMLHQIRKMIAMAVLVVRTGCPITRIKDCFGP-TKINIPKAPALGLL 367
Query: 440 L 440
L
Sbjct: 368 L 368
>gi|448533280|ref|XP_003870598.1| Pus1 protein [Candida orthopsilosis Co 90-125]
gi|380354953|emb|CCG24469.1| Pus1 protein [Candida orthopsilosis]
Length = 554
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 16/148 (10%)
Query: 69 DDKWEPVRK------KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
DD+ P+ K +K A+ +GY GT Y GLQ+Q +E + TIE +L A +KAG I
Sbjct: 76 DDQGNPIPKSERKPKRKCAVMLGYCGTGYNGLQIQ-NEPGVKTIEKDLYEAFYKAGAISL 134
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
N +L+K + R++RTDKGVH+ ++ LKM I +DP DL ++N HLP I
Sbjct: 135 ENSLDLKKSGFQRTARTDKGVHAAGNVVSLKMII------EDP---DLKDKINQHLPDQI 185
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLP 210
+++ I + + FD R+ C+ R Y YLLP
Sbjct: 186 RIWGIQRTTKGFDCRKMCSSRVYEYLLP 213
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKM+ A V R LP ++ + ++I +P AP+ L L
Sbjct: 384 WISIKIHGQSFMLHQIRKMICMATLVIRCDLPIGLID-DCFEPTKINIPKAPALGLLLEN 442
Query: 443 NSF 445
F
Sbjct: 443 PVF 445
>gi|255087382|ref|XP_002505614.1| predicted protein [Micromonas sp. RCC299]
gi|226520884|gb|ACO66872.1| predicted protein [Micromonas sp. RCC299]
Length = 294
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 22/186 (11%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K+K+A + YVG Y+G Q TIE ELE A+ AGGI N G+ K+ W R
Sbjct: 3 KKRKIAAFLAYVGKGYQGFQRN---PGARTIEDELERAIVAAGGISADNAGDFTKVQWTR 59
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV ++ I L+M + DP G+ +R+NA LP K+F F+
Sbjct: 60 AARTDKGVSAVGQCIALRMVL-------DPPGV--LERINAALPEGFKIFGYKRVTGGFN 110
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF----------NAILNEFEGEHPF 245
+ C+ R+Y Y++P L E D F N IL + G H F
Sbjct: 111 AKTMCDRRRYEYVIPTCAFDPRRCLPRREDDKEAKAFVFDEELRARVNKILGNYCGTHNF 170
Query: 246 HNYTER 251
HNYT R
Sbjct: 171 HNYTVR 176
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T D A+ R I S CG+ G +V ++ G+SFMLHQIRK++GT + V R
Sbjct: 174 TVRVDPNDAAAMRYIISFECGEPFVIDGVEFVRTTVVGQSFMLHQIRKLIGTMLCVVRGY 233
Query: 413 LPRDILTLSL-AKHSRIVLPLAPSE 436
L + +L K S PLA E
Sbjct: 234 LAEEDQIFALKTKESCSHEPLALDE 258
>gi|340372817|ref|XP_003384940.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Amphimedon queenslandica]
Length = 422
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 24/196 (12%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
N ++ ++++K AL + Y G Y G+QM + TIEGEL TAL+KAG I E++
Sbjct: 23 NGVEENKSLLKRRKCALVIAYCGKGYMGMQMNP---GVPTIEGELMTALWKAGAISEAHK 79
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
+ K+ + R RTDKGV + ++ LK+ +P + + +N HLP I+
Sbjct: 80 DSQNKLGFQRCGRTDKGVSAARQVVSLKIIYMVPHQS---------MVSAINEHLPEQIR 130
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIG------INSQLTAAEIDSHISDFNAILN 237
+ + +SF+ + C R Y YLLP V ++ ++TA EI+ A+LN
Sbjct: 131 IIGLKRVSKSFNSKNACTSRLYEYLLPTYVFAPFKATNMDYRITATEINR----IQALLN 186
Query: 238 EFEGEHPFHNYTERSK 253
++G H FHN+T K
Sbjct: 187 MYKGTHKFHNFTSGKK 202
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V +++ G+SFM+HQIRKM+G +AV R + D +T + + +P AP+ LFL
Sbjct: 228 FVSLNVEGQSFMIHQIRKMIGLVIAVVRGYMNDDAITQAFEP-PQTDIPRAPALGLFL 284
>gi|409040526|gb|EKM50013.1| hypothetical protein PHACADRAFT_153289 [Phanerochaete carnosa
HHB-10118-sp]
Length = 555
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 120/256 (46%), Gaps = 52/256 (20%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
N ++ K + K++ AL +G+ G+ Y G+Q+QR+ ++ TIEG L AL + G + + N
Sbjct: 106 NDNEPKEPRLPKRQTALLIGFCGSGYNGMQLQRNHENIKTIEGTLFDALVRVGAVSKDNA 165
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGID-LAKRVNAHLPRNI 182
N K+ + R++RTD GVH+ ++ +KM IP G+D L R+N LP+ I
Sbjct: 166 DNPAKVNFNRAARTDAGVHAAGNLVSMKMITSIP---------GVDNLIARINEELPQEI 216
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVI-----GINSQLTAAEIDSHIS---DF-- 232
+++ + Q +F+ R CN RKY+Y P+ ++ G T E +S S DF
Sbjct: 217 RLWDTVRVQNAFNARTTCNARKYTYFFPSYLLIPPKPGSGLHKTVFEQNSASSPLLDFWQ 276
Query: 233 ----------------------------NAILNEFEGEHPFHNYTERSKYRRKPHKTGRV 264
+FEG H FHN+T +Y K + R+
Sbjct: 277 GVPAESSPNDDLARKRTWRAPKEVVEMLRETAKKFEGSHKFHNFTVGQEY--KDPTSQRI 334
Query: 265 SKRAKASKDAVFSRVE 280
K+ + + V+ E
Sbjct: 335 MKKIEVADPVVYGDTE 350
>gi|452820462|gb|EME27504.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 943
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 114/213 (53%), Gaps = 20/213 (9%)
Query: 46 ASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLST 105
AS+ S S ++ ++S+ K ++ K A+ +GY+G Y+G MQR+ ++S
Sbjct: 57 ASAEESVSVKTSVCNSKTVAHNSNSK----KRHKFAIVIGYLGAAYQG--MQRNPGAVS- 109
Query: 106 IEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDP 165
IEGELE AL G I + GNL+KI W+R++RTDKGV + ++ + + D ++
Sbjct: 110 IEGELEKALVATGLIPNNLEGNLRKIEWSRAARTDKGVSAAGQVVSTYLLVDKDFEREQ- 168
Query: 166 YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQ-----L 220
D+ KRVN LP +I++ + F + C+ R+YSY+ P+ + + Q L
Sbjct: 169 ---DILKRVNDTLPTDIRILGVYSVSGGFHAKNACDRRRYSYMFPSWTLCRSKQEHEKML 225
Query: 221 TAAE----IDSHISDFNAILNEFEGEHPFHNYT 249
++ + + + D N +L F G H FHN+T
Sbjct: 226 KDSDYKNIMKAKVDDLNDLLKYFIGTHHFHNFT 258
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 45/61 (73%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ +++ G+SF+LHQIRKM+G A+AV + +P++ +SL+KH R+ P+APS LF
Sbjct: 285 GESFLNVTVVGQSFLLHQIRKMIGLAIAVSKGWIPKEAFNVSLSKHHRLETPMAPSLGLF 344
Query: 440 L 440
L
Sbjct: 345 L 345
>gi|449016496|dbj|BAM79898.1| similar to tRNA-pseudouridine synthase I [Cyanidioschyzon merolae
strain 10D]
Length = 773
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 107/227 (47%), Gaps = 42/227 (18%)
Query: 75 VRKKKVALRVGYVGTDYRGLQM--QRDEHSLST------------------IEGELETAL 114
++K+ +AL GY GT++RG Q+ R ++T +EGEL AL
Sbjct: 87 LKKRNIALWFGYAGTEFRGSQVLEPRRRQPVATAANEAGSGDRAVDLRDGTVEGELAQAL 146
Query: 115 FKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK--DDPYGIDLAK 172
++ G + E N+ L KI W+R+SRTDKGVH++A ++ K+ + +D
Sbjct: 147 YRIGAVTELNFMKLSKICWSRASRTDKGVHAVANVVSAKLLLDLRRDLTSNDELTDLFVD 206
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R+NA LP NI+VF + F R C LR+Y YLLP V +D F
Sbjct: 207 RLNAQLPPNIRVFGGQRMSKGFRARSACTLREYDYLLPRWV-----------LDGREDLF 255
Query: 233 NAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRV 279
L FEG H FHN++ + + R+ R K + ++V
Sbjct: 256 LQALRCFEGTHRFHNFSGKER---------RIQGRGKQTSHDALAKV 293
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + + G+SF+LHQIR+++G + V R L + L +L R+V AP L
Sbjct: 542 GCDFLLVRVRGQSFVLHQIRRLIGAGILVARGHLSLEALEAALEGPYRVVFWRAPGSCLM 601
Query: 440 LRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIE 499
L SF R + +V S I + F +P+V + W +++
Sbjct: 602 LYQPSF------WDPRRRLFRLVPSPRIKARMQRFRQETLIPQVCAI---GQLEWKAFLD 652
Query: 500 NLE--KFTSIPNEQLDEVRNAWQLWKEK 525
+ K EQL E ++LW+E+
Sbjct: 653 PAQGAKVVYCHQEQLVE---QYRLWRER 677
>gi|440301846|gb|ELP94232.1| tRNA pseudouridine synthase A, putative [Entamoeba invadens IP1]
Length = 406
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 98/192 (51%), Gaps = 24/192 (12%)
Query: 71 KWEPVRKKKVALRVGYVGTDYRG-LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
K + V+K KVAL V YVG Y+G + ++ E TIEG++E A++ AG I E N + +
Sbjct: 41 KHQKVKKTKVALIVSYVGRGYQGSMYLKNGE---KTIEGDVENAIYLAGCISEDNKHDFK 97
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID--LAKRVNAHLPRNIKVFSI 187
K++W+R +RTDKGV + + LKM G D +R+N+HLP I+V
Sbjct: 98 KVSWSRCARTDKGVSAANNIFSLKM------------GTDGNFIERINSHLPETIRVMDC 145
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVI------GINSQLTAAEIDSHISDFNAILNEFEG 241
+ +R FD + R Y Y+ P+ + +N L + I FN ++ +
Sbjct: 146 VRVRRLFDAHTRVDNRNYEYVFPSYALQQLHPNDLNIDLNYKATEEDIQYFNFVIGHYIR 205
Query: 242 EHPFHNYTERSK 253
H F NYT +K
Sbjct: 206 SHNFQNYTYNTK 217
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 349 WLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV 408
+ Y T E S S+ R I S ++++ G V +++ G+SFM++QIRKMVG A+ +
Sbjct: 212 YTYNTKETTPESQSNIRNILSIEATLVQRN-GLDLVVVALKGQSFMIYQIRKMVGFALML 270
Query: 409 KRKLLPRDIL------TLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTM- 461
++++ + +L K R ++P AP LFL +F V + Q +
Sbjct: 271 TNMRYSKEMVDSIMETSFTLVKW-RSLVPTAPPYGLFLERCNFDVYNNDIQNNIQTQNLP 329
Query: 462 -VESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSI 507
+ SEE +K +EF +++ + + P+ ++ +N ++ I
Sbjct: 330 IINSEETIKKCEEFKEKSIWTDITNY-EKENHPFAQYFQNEVHYSKI 375
>gi|296412959|ref|XP_002836186.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629994|emb|CAZ80377.1| unnamed protein product [Tuber melanosporum]
Length = 454
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 24/193 (12%)
Query: 69 DDKWEPVR------KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
D KWEP KKKVA+ +GY GT YRG+Q+ S IE +L A +AG I +
Sbjct: 76 DSKWEPRNSEARRPKKKVAVLIGYCGTGYRGMQLNPPHKS---IESDLFEAFVQAGAISK 132
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
+N + +K + R +RTDKGVH+ +I LK+ I +DP D+ +++N++LP I
Sbjct: 133 ANSDDPKKSSLVRCARTDKGVHAAGNVISLKLII------EDP---DITEKINSYLPEQI 183
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEV-IGINSQLTAAEIDSHISD-----FNAIL 236
+V+ I+ + SF +C+ R+Y YL+P+ I + + A+ IS
Sbjct: 184 RVWGIVRTVGSFSSYHQCDSRRYEYLVPSHCFIPPHPKSYLAKKTYRISPKRLQRVREGF 243
Query: 237 NEFEGEHPFHNYT 249
+EG H FHN+T
Sbjct: 244 RSYEGTHNFHNFT 256
>gi|393226898|gb|EJD34606.1| pseudouridine synthase [Auricularia delicata TFB-10046 SS5]
Length = 531
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 52/221 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K AL +G+ GT + G+Q Q + + TIEGEL AL KAG I E N + K RS
Sbjct: 102 KRKCALLLGFCGTGFNGMQRQARQLNARTIEGELFAALVKAGAISEDNADDPSKSQLQRS 161
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ +K+ E+P G+ DL +N LP +I+++SI+ Q S
Sbjct: 162 ARTDSGVHAAGNVVSIKLITEVP---------GVPDLVAHINDLLPPSIRLWSIVRVQNS 212
Query: 194 FDPRRECNLRKYSYLLPAEVI-------GINSQLTA--------------AEIDSHISD- 231
F R C+ RKY+Y+ P+ ++ ++S L + AE+ + +S
Sbjct: 213 FSARTSCDSRKYTYVFPSHILLPPKPGSPLHSHLKSSPGVSDAVVNHPFWAEVGAELSPE 272
Query: 232 ------------------FNAILNEFEGEHPFHNYTERSKY 254
F A L E+ G H FHN+T + ++
Sbjct: 273 EERRRKQRWRVGPAALDAFRAALAEYHGTHNFHNFTVQKEF 313
>gi|303288890|ref|XP_003063733.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454801|gb|EEH52106.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 313
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 97/181 (53%), Gaps = 18/181 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ + YVG Y+G MQR+ ++ TIE ELE A+ AGGI + N G+ K+ W R+
Sbjct: 1 KRKVAIFLAYVGKGYQG--MQRNPGAV-TIEDELEKAIVAAGGISDLNAGDFAKVQWMRA 57
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV ++ + L+M I DP G+ RVNA LP + F F+
Sbjct: 58 ARTDKGVSAVGQCVSLRMVI-------DPPGV--IDRVNAALPEGFEFFGYERVTGGFNA 108
Query: 197 RRECNLRKYSYLLPAEVIGINSQLT-----AAEIDSHISD-FNAILNEFEGEHPFHNYTE 250
+ C+ R+Y Y++P + ++ + E D + N IL + G H FHN+T
Sbjct: 109 KTMCDRRRYEYVVPVKAFDPRAKNSDDASPPFEFDETMRQRVNKILGNYVGTHNFHNFTV 168
Query: 251 R 251
R
Sbjct: 169 R 169
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S R I S C G +V + G+SFMLHQIRK++G + V R + +
Sbjct: 176 SAMRYIISFDCSAPFVVDGVAFVRCVVVGQSFMLHQIRKLIGMMLGVIRGAWSEEDQLFA 235
Query: 422 LAKHSRIVLPLAPSEVLFL 440
L + +P+AP LFL
Sbjct: 236 LNTKESVNVPMAPELGLFL 254
>gi|410084294|ref|XP_003959724.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
gi|372466316|emb|CCF60589.1| hypothetical protein KAFR_0K02340 [Kazachstania africana CBS 2517]
Length = 370
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 34/195 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K KVAL +GY G +Y G+Q D + TIEG L AL +AG I ++N N K + R+
Sbjct: 35 KHKVALMIGYCGDNYHGMQYNAD---VQTIEGALFRALCQAGAISKANSTNFNKNKFMRT 91
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH++ +I LKM I +DP D+ +RVN+ LP +I +++I + F+
Sbjct: 92 TRTDKGVHAVCNLISLKMII------EDP---DIKERVNSFLPADITLWNIQRVNKKFNC 142
Query: 197 RRECNLRKYSYLLPAEVI------GINSQLTA-----------AEIDSHISD-----FNA 234
R C R Y Y LP V+ I S++ + DS +S F
Sbjct: 143 RTACESRLYEYALPTFVLQNPPSQSILSRMLQLFGHSPIVHQYSMQDSTLSSKKFCHFEK 202
Query: 235 ILNEFEGEHPFHNYT 249
L+ + G H FHN+T
Sbjct: 203 CLSMYTGTHNFHNFT 217
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I G+SFMLHQIRKMV A V R P D L ++ + +P APS L L +
Sbjct: 247 WISIKFHGQSFMLHQIRKMVALATIVTRYDYPCDT-ALKCFENKKTYIPNAPSMGLTLLS 305
Query: 443 NSFSVRTR 450
FS R
Sbjct: 306 PMFSSYNR 313
>gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 100/195 (51%), Gaps = 24/195 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L GY G +Y GLQ+Q+ T+E +L AL + I E N +L K W+R
Sbjct: 7 KQKVLLTFGYNGANYHGLQIQKGV-EFETVESKLFQALKDSNLIMEQNANDLSKSGWSRG 65
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD--------------DPYGIDLAK---RVNAHLP 179
+RTDKGVH+L I +K+ I + +KD D +D +K +N++LP
Sbjct: 66 ARTDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQKVDYSKVLNVINSNLP 125
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEF 239
+IKV SI + FD R+ R Y Y+ P + I S EI +S+ ++ +F
Sbjct: 126 NDIKVHSIKLVTQGFDVRKNARYRFYEYIAP---VSIYSDKKGEEILEKVSN---LVKKF 179
Query: 240 EGEHPFHNYTERSKY 254
G H FHNY+ KY
Sbjct: 180 VGTHNFHNYSRGMKY 194
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS-RIVLPLAPSEVLFLR 441
+ + I G+SF+ HQIRKM+G + + ++ LP + + K+ RI+ LAP+E LFL
Sbjct: 218 FFKFLIHGQSFIYHQIRKMMGIVIQIFQEELPDTFIDNTFFKNQLRII--LAPAEGLFLN 275
Query: 442 ANSF-SVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFL---DATKSPWTEW 497
SF T+ + P+ + E ++I +D+F P + F+ + +T W
Sbjct: 276 RISFEGYNTKFDI--PQRLEIEEEDQI--KIDQF-----RPTIVDFICEQEIKNQTFTNW 326
Query: 498 IENLE 502
++ L+
Sbjct: 327 LKILK 331
>gi|344230875|gb|EGV62760.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 508
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 94/182 (51%), Gaps = 23/182 (12%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVR-------------KKKVALRVGYVGT 89
R ++S T RP SS++ ++P K+KVA +GY GT
Sbjct: 21 RARKEDKRENSNKRQKTEERPDRRSSNNDYQPRVDEEGNVIKSERRPKRKVACMIGYCGT 80
Query: 90 DYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATM 149
Y G+Q+Q + + TIEGEL A AG I + N +L+K + R++RTDKGVH+ +
Sbjct: 81 GYNGMQIQNNP-DVKTIEGELFQAFINAGAISQENSNDLKKNGFMRAARTDKGVHAAGNV 139
Query: 150 ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLL 209
I K+ I + D+ +++N LP I+++ I + RSFD R+ C+ R Y YLL
Sbjct: 140 ISCKLIIEDE---------DILQKINKALPEQIRIWGIERTNRSFDCRKMCSSRVYEYLL 190
Query: 210 PA 211
P
Sbjct: 191 PT 192
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V I I G+SFMLHQIRKM+ AV + R P + + + +R+ +P AP+ L L
Sbjct: 345 WVSIKIHGQSFMLHQIRKMIAMAVMLVRTGCPATRINETFS-STRVNIPKAPALGLLL 401
>gi|281201760|gb|EFA75968.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 531
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+ VGY GT+YRG+Q TIE ELE A+FK GGI N +KI W R +RT
Sbjct: 132 VAICVGYSGTNYRGMQKN---PGFPTIEDELEKAIFKVGGISPDNMYCHRKIDWIRCART 188
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
DKGV ++ M+ K+E P P ++ +NA LP +I+VF+I +F +
Sbjct: 189 DKGVSAIRNMVSCKLEYDP------PTLDEMKTAINAQLPNDIRVFAIKRVNNTFHAKNC 242
Query: 200 CNLRKYSYLLPA---EVIGINSQLTAAEIDS-HISDFNAILNEFEGEHPFHNYTER 251
+ R Y Y+ P E I N++ + D + N++L F G +HNYT +
Sbjct: 243 VDRRSYIYITPTFAFEPIFANNKPAQYKFDELERTRLNSLLKLFVGTRKYHNYTSK 298
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRD----- 416
S R + S C + + G V I+I G+SFMLHQIRKM+G + RK D
Sbjct: 305 SAVRTVNSFECSEPFMNEGVELVAINIVGQSFMLHQIRKMIGVTMQFMRKGFFADSESDE 364
Query: 417 -------ILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRP-GVTRPEMQTMVESEEIL 468
L + H + LP+AP L L + + T+ G ++ ++EEI
Sbjct: 365 AALSKMKKLVEATFAHRQFNLPMAPGAGLLLDRCLYDIWTQKFGSVHGDLMFNEQAEEI- 423
Query: 469 KMVDEFYTSVTLPEVSKF--------------LDATKSPWTEWIENLEKFTSIP 508
+ F E++KF LD P+ + I+ E + P
Sbjct: 424 ---EAFKKDRVYKEIAKFESEQQLFKTWFKDCLDPYPLPYADLIDTFENPPAAP 474
>gi|344230876|gb|EGV62761.1| hypothetical protein CANTEDRAFT_115504 [Candida tenuis ATCC 10573]
Length = 559
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 90/166 (54%), Gaps = 23/166 (13%)
Query: 59 TLTRPTPNSSDDKWEPVR-------------KKKVALRVGYVGTDYRGLQMQRDEHSLST 105
T RP SS++ ++P K+KVA +GY GT Y G+Q+Q + + T
Sbjct: 37 TEERPDRRSSNNDYQPRVDEEGNVIKSERRPKRKVACMIGYCGTGYNGMQIQNNP-DVKT 95
Query: 106 IEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDP 165
IEGEL A AG I + N +L+K + R++RTDKGVH+ +I K+ I +
Sbjct: 96 IEGELFQAFINAGAISQENSNDLKKNGFMRAARTDKGVHAAGNVISCKLIIEDE------ 149
Query: 166 YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
D+ +++N LP I+++ I + RSFD R+ C+ R Y YLLP
Sbjct: 150 ---DILQKINKALPEQIRIWGIERTNRSFDCRKMCSSRVYEYLLPT 192
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V I I G+SFMLHQIRKM+ AV + R P + + + +R+ +P AP+ L L
Sbjct: 345 WVSIKIHGQSFMLHQIRKMIAMAVMLVRTGCPATRINETFSS-TRVNIPKAPALGLLL 401
>gi|240282351|gb|EER45854.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H143]
Length = 612
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 181/419 (43%), Gaps = 74/419 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSETE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP ++ +++N HL I+V+ I + +SF
Sbjct: 177 ARTDKGVHAAGNVVSLKLIV------EDP---NVVQKINGHLSPQIRVWGIEITNKSFSS 227
Query: 197 RRECNLRKYSYLLPAEVI-------GINSQLTAAEIDSHISDFNAILN-EFEGEHPFHNY 248
C+ R Y YL+P+ + QL EI +D + E H +
Sbjct: 228 YHLCDSRIYEYLIPSHCFLPPHPSTHLGQQLV--EIAEQENDLEGYQQRQVEVAHYWEEV 285
Query: 249 TERSKY-----RRKPHKTGRVSKRA---KASKDAVFSRVEESEGEEDGFSKVEESDGEED 300
E KY R P T K+A K+ D + S+GE+D +E DGE
Sbjct: 286 DE--KYIKPILERLPEVTRNRVKQALIIKSGTDPADNST--SQGEQDQLDPSDEQDGE-- 339
Query: 301 LGIGGEISSDDEKANQNSMVSGVHQEDCCNQ-----HANGLKDQNSSSVIRARWLYETDE 355
+ + +S N++ G N+ A L + + + R R D
Sbjct: 340 --VTSKEASTSTNENKDLSSGGAQAVHTTNEAIRIIRAAYLDAKKAYRIPRERMDRINDA 397
Query: 356 ADKLSASH------FRKIFSCSCGKLE-KSL----------GFGYVEISISGESFMLHQI 398
+ +K F + K KS G ++ + + G+SFM+HQI
Sbjct: 398 LGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMHQI 457
Query: 399 RKMVGTAVAVKR-----KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSFSVRT 449
RKMV A + R KL+P +I +P AP L L +S++ RT
Sbjct: 458 RKMVAMAALIVRCGCDIKLVPETY------GDQKIAIPKAPGLGLLLERPIFDSYNKRT 510
>gi|325088485|gb|EGC41795.1| tRNA pseudouridine synthase [Ajellomyces capsulatus H88]
Length = 612
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 181/419 (43%), Gaps = 74/419 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSETE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP ++ +++N HL I+V+ I + +SF
Sbjct: 177 ARTDKGVHAAGNVVSLKLIV------EDP---NVVQKINGHLSPQIRVWGIEITNKSFSS 227
Query: 197 RRECNLRKYSYLLPAEVI-------GINSQLTAAEIDSHISDFNAILN-EFEGEHPFHNY 248
C+ R Y YL+P+ + QL EI +D + E H +
Sbjct: 228 YHLCDSRIYEYLIPSHCFLPPHPSTHLGQQLV--EIAEQENDLEGYQQRQAEVAHYWEEV 285
Query: 249 TERSKY-----RRKPHKTGRVSKRA---KASKDAVFSRVEESEGEEDGFSKVEESDGEED 300
E KY R P T K+A K+ D + S+GE+D +E DGE
Sbjct: 286 DE--KYIKPILERLPEVTRNRVKQALIIKSGTDPADNST--SQGEQDQLDPSDEQDGE-- 339
Query: 301 LGIGGEISSDDEKANQNSMVSGVHQEDCCNQ-----HANGLKDQNSSSVIRARWLYETDE 355
+ + +S N++ G N+ A L + + + R R D
Sbjct: 340 --VTSKEASTSTNENKDLSSGGAQAVHTTNEAIRIIRAAYLDAKKAYRIPRERMDRINDA 397
Query: 356 ADKLSASH------FRKIFSCSCGKLE-KSL----------GFGYVEISISGESFMLHQI 398
+ +K F + K KS G ++ + + G+SFM+HQI
Sbjct: 398 LGMYVGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMHQI 457
Query: 399 RKMVGTAVAVKR-----KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSFSVRT 449
RKMV A + R KL+P +I +P AP L L +S++ RT
Sbjct: 458 RKMVAMAALIVRCGCDIKLVPETY------GDQKIAIPKAPGLGLLLERPIFDSYNKRT 510
>gi|225559412|gb|EEH07695.1| tRNA pseudouridine synthase [Ajellomyces capsulatus G186AR]
Length = 612
Score = 104 bits (260), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 115/415 (27%), Positives = 182/415 (43%), Gaps = 66/415 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSETE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP ++ +++N HL I+V+ I + +SF
Sbjct: 177 ARTDKGVHAAGNVVSLKLIV------EDP---NVVQKINGHLSPQIRVWGIEITNKSFSS 227
Query: 197 RRECNLRKYSYLLPAEVI-------GINSQLTAAEIDSHISDFNAILN-EFEGEHPFHNY 248
C+ R Y YL+P+ + QL EI +D + E H +
Sbjct: 228 YHLCDSRIYEYLIPSHCFLPPHPSTHLGQQLV--EIAEQENDLEGYQQRQAEVAHYWEEV 285
Query: 249 TERSKY-----RRKPHKTGRVSKRA---KASKDAVFSRVEESEGEEDGFSKVEESDGE-- 298
E KY R P T K+A K+ D + S+GE+D +E DGE
Sbjct: 286 DE--KYIKPILERLPEVTRNRVKQALIIKSGTDPADNST--SQGEQDQLDPSDEQDGEVT 341
Query: 299 -----EDLGIGGEISSDDEKA--NQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLY 351
++SS DE+ N + + + A + + + A +Y
Sbjct: 342 SKEASASTNENKDLSSGDEQTVHTTNEAIRIIRAAYLGAKKAYRIPRERMDRINDALGMY 401
Query: 352 --------ETDEADKLSASHFRKIFSCSCGKLEKSL-GFGYVEISISGESFMLHQIRKMV 402
T + AS R I S + + G ++ + + G+SFM+HQIRKMV
Sbjct: 402 VGTRNFHNYTIQKSFRDASAKRHIKSFKISREPLIINGTEWLSLKVHGQSFMMHQIRKMV 461
Query: 403 GTAVAVKR-----KLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSFSVRT 449
A + R KL+P +I +P AP L L +S++ RT
Sbjct: 462 AMAALIVRCGCDIKLVPETY------GDQKIAIPKAPGLGLLLERPIFDSYNKRT 510
>gi|294655697|ref|XP_002770167.1| DEHA2C04312p [Debaryomyces hansenii CBS767]
gi|199430534|emb|CAG85917.4| DEHA2C04312p [Debaryomyces hansenii CBS767]
Length = 528
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 92/169 (54%), Gaps = 16/169 (9%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
R S S+ +P V + P P S E KKKVA +GY GT Y G+Q+Q +
Sbjct: 42 RGNIRSRSEFTPRVDES-GNPLPKS-----ERRPKKKVACMIGYCGTGYNGMQIQNN-LD 94
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
+ TIEG+L A KAG I N +L+K + R++RTDKGVH+ +I K+ I +
Sbjct: 95 VKTIEGDLFQAFVKAGAISPENADDLKKNGFMRAARTDKGVHAAGNVISCKLIIEDE--- 151
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
D+ +++N LP I+V+ I + +SFD R+ C+ R Y YLLP
Sbjct: 152 ------DILEKINKELPDQIRVWGIERTNKSFDCRKMCSSRVYEYLLPT 194
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I I G+SFMLHQIRKM+ AV V R P + ++I +P AP+ L
Sbjct: 357 GTEWVSIKIHGQSFMLHQIRKMISMAVLVIRTGCPISRIQDCFGP-TKINIPKAPALGLL 415
Query: 440 L 440
L
Sbjct: 416 L 416
>gi|315050550|ref|XP_003174649.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
gi|311339964|gb|EFQ99166.1| tRNA pseudouridine synthase 1 [Arthroderma gypseum CBS 118893]
Length = 582
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 108/391 (27%), Positives = 174/391 (44%), Gaps = 53/391 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 99 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 155
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 156 ARTDKGVHAAGNVVSLKLII------EDP---DVVQKINEKLNPQIRVWGIIPATKGFSA 206
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA--ILNEFEGEHPFHNYTERS-- 252
+ C+ R Y YL+P+ + H S F A ++ E + ER
Sbjct: 207 YQFCDSRMYEYLIPSHCF----------LPPHPSTFLAQKMVEMAEKHGDMEAFKERQAE 256
Query: 253 -----KYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGE---EDLGIG 304
+ K H + + K V + V GEED + DGE E++G
Sbjct: 257 VESYWEETDKKHIQPIIDALPEKIKPYVQAAVGSVGGEEDKTTSSSNEDGEAGQENVGET 316
Query: 305 GEISSD---DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSA 361
SD DE+A N + + ++ + + + + A LY +
Sbjct: 317 DAKKSDLTPDEQAQVNVAIKDIRTAYFEAKNEYRIPPERLARINAALALYVGTK--NFHN 374
Query: 362 SHFRKIF-SCSCGKLEKSL----------GFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
+K F S +L KS G ++ + + G+SFM+HQIRKMV + R
Sbjct: 375 YTIQKTFRDASARRLIKSFKISRDPVVINGTEWLSLKVHGQSFMMHQIRKMVAMVALLVR 434
Query: 411 KLLPRDILTLSLA-KHSRIVLPLAPSEVLFL 440
DI ++ + ++SRI +P AP L L
Sbjct: 435 --CGADINRINESYQNSRIPIPKAPGLGLLL 463
>gi|253744083|gb|EET00338.1| Pseudouridylate synthase 1 [Giardia intestinalis ATCC 50581]
Length = 465
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 197/486 (40%), Gaps = 84/486 (17%)
Query: 65 PNSSDDKWEPVRKK------KVALRVGYVGTDYRGLQMQRDEHS---LSTIEGELETALF 115
PN +D EPV K+ +A+ +GYVGT Y G Q Q + + T+EGE+ A+
Sbjct: 20 PNGADLCTEPVLKQLRPKLVHIAIALGYVGTRYSGSQWQAPSVTHPHICTVEGEVYAAIE 79
Query: 116 KAGGIRESNYG-NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV 174
AG + YG +++ I W R SRTDK V + + P +DL + +
Sbjct: 80 AAGLL----YGRDIKSIGWTRCSRTDKSVSAAMAVFSFFA----------PINLDLVQAL 125
Query: 175 NAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA 234
HLP++I +F + F+ + C R Y Y++P + +SQ A + + F +
Sbjct: 126 QPHLPKDISIFGTVRVPPKFNAKMACTSRTYEYIMPLAFLLPSSQDKTASLCPDMETFFS 185
Query: 235 ILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEE 294
LN P TG +A SR+ ++ D ++
Sbjct: 186 YLNS-------------------PLSTGGTETIKEAC-----SRLYTAQ-RHDILDFLQL 220
Query: 295 SDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETD 354
D ++ S D ++++ Q K N+ + R R +
Sbjct: 221 DDELREVRASLCASCDSPADMFDTILQPFLQ-----------KLINTVFLTRIRAYHNFT 269
Query: 355 EADKLSASHFRKIFSCSC-----------GKLEKSLGFGYVEISISGESFMLHQIRKMVG 403
E + ++ RKI SCS + K + + +I+I G++F+++QIR+M+G
Sbjct: 270 EDNVQPSASSRKILSCSVSPSAVFDSQDSAEKTKLITELHTKITICGQAFLMYQIRRMMG 329
Query: 404 TAVAVKRKLLPRDILTLSL---AKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQT 460
VA+ R +P L + KH R + AP L L+ ++
Sbjct: 330 ALVAIVRGWIPVTFLYFAFQTRTKHLR--MSTAPGHYLLLKQPNYEHLLLKKDFTQHGTF 387
Query: 461 MVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQ 520
+ E E I ++ + F PE+ K K+ +E ++ +I +E DE+
Sbjct: 388 ISEDERIKRLAESFKVDNIYPEIVKI---HKNLVSE-----DRIQTILDEMKDELCKYES 439
Query: 521 LWKEKR 526
WK+ R
Sbjct: 440 GWKQAR 445
>gi|42572123|ref|NP_974152.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|332197678|gb|AEE35799.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 356
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 62/372 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+ + G Y+G+Q TIEGELE ALF AG + ES G + +ARS+
Sbjct: 22 QKVAIIFAFCGVGYQGMQ---KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV ++ ++ + + DP G R+N++LP I++F SF +
Sbjct: 79 RTDKGVSAVGQVVSGRFIV-------DPLG--FVNRLNSNLPNQIRIFGYKHVTPSFSSK 129
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ C+ R+Y YLLP + A + SH + + GE + + R+
Sbjct: 130 KFCDRRRYVYLLP---------VFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKI 180
Query: 258 PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDL--GIGGEISSDDEKAN 315
P G V K K + S +S+ + S + E L + G S D E
Sbjct: 181 P--PGLVGK-WKGTNFGTKSLDFQSDISSNNSSALRSDIKIEALSSNLAGLCSVDVE--- 234
Query: 316 QNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLS--------ASHF--- 364
G QED C + N +S + +++++ Y E ++ S + +F
Sbjct: 235 -----VGRIQEDSCKLNTN-----SSETKVKSKFCYGEKEKERFSRILSCYVGSYNFHNF 284
Query: 365 ------------RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
R+I S + + G +++ + G+SFMLHQIRKM+G AVA+ R
Sbjct: 285 TTRTKADDPTANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLAVAIMRNC 344
Query: 413 LPRDILTLSLAK 424
++ + +K
Sbjct: 345 ASESLIQSAFSK 356
>gi|170586438|ref|XP_001897986.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158594381|gb|EDP32965.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 225
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 17/193 (8%)
Query: 66 NSSDDKWEPVRKKK-----VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
+S+ D EPVRK + AL + Y G Y G+Q+Q+D TIEGEL A+ K G I
Sbjct: 10 DSAGDIDEPVRKSRRKEYSYALLLAYQGKKYNGMQVQKD---FPTIEGELFKAMAKCGYI 66
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAHLP 179
E++ + + A+ R++RTD+ V S A +C M + P+ + Y + A ++N HLP
Sbjct: 67 CENDVFSPVRFAFQRAARTDRSV-SAARQMC-SMRLAPE---NHEYFLKTATDKLNTHLP 121
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAIL 236
I+V + + RSF + C+ R YSY LP +LT + ++ I++ N +L
Sbjct: 122 EEIRVLGVRRATRSFKAHKNCDKRTYSYTLPTYAFARADELTTSGFRMSETSIAELNDLL 181
Query: 237 NEFEGEHPFHNYT 249
++G H F NYT
Sbjct: 182 ALYKGTHNFFNYT 194
>gi|380016702|ref|XP_003692314.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
florea]
Length = 391
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 50/209 (23%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++KK + +GY+G +Y G+Q+ R TIEG L +AL KA I + + +L++I +
Sbjct: 45 VKRKKFVIVLGYLGKNYSGMQINR---GTKTIEGSLLSALLKADFITKDQFEDLKEIKFQ 101
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV ++ ++ L ++P K+D +N HLP++I+VF I R+F
Sbjct: 102 RAARTDKGVSAVRQIVSL--QLPNHVNKED---------INKHLPKDIRVFDIKRVTRNF 150
Query: 195 DPRRECNLRKYSYLLPAEVIG--------------------------INSQ------LTA 222
+ + +C+ R Y Y+LP + IN + LT+
Sbjct: 151 NSKNKCDARTYRYVLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMINGKPYNEFRLTS 210
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTER 251
+D N IL FEG H FHN+T +
Sbjct: 211 DMLDK----LNEILKLFEGTHNFHNFTSK 235
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 11/71 (15%)
Query: 368 FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS- 426
F C + ++ F +E+ G+SFMLHQIRKM+ + + R+I+T+ K +
Sbjct: 250 FRCIETFIANNMEFAILEVQ--GQSFMLHQIRKMISLIIGI-----CRNIITIDFVKDAF 302
Query: 427 ---RIVLPLAP 434
+I +P+AP
Sbjct: 303 SLEKIDIPIAP 313
>gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei]
gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei]
Length = 438
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 11/183 (6%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++ K A+ +GY G Y G+Q+Q+D L TIE +L A+ KAG I + +
Sbjct: 30 VKQAKYAMLLGYQGKKYYGMQLQKD---LPTIESKLLEAMEKAGWITAAQRDKPFDFFFQ 86
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTD+ V S A +C M++P D DD Y D A +N LP +I+VF + + F
Sbjct: 87 RAARTDRAV-SAARQMC-GMQLPRD---DDKYQTDGAGVLNNLLPDDIRVFGMRRTINFF 141
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
P+++C+ R YSY P+ V ++LT + +++ N IL+ ++G H F NYT +
Sbjct: 142 HPQKQCDYRTYSYTCPSFVFAKPTELTNSAFRLPKETLAEVNDILSIYKGTHNFFNYTAK 201
Query: 252 SKY 254
Y
Sbjct: 202 RAY 204
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V+I + G+SF+LHQIRKMVG + V R+L + + S + R+ +P+AP L L
Sbjct: 235 FVQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRSF-EGQRMDIPMAPGLGLLLER 293
Query: 443 NSF 445
+
Sbjct: 294 THY 296
>gi|388583219|gb|EIM23521.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 531
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 103/210 (49%), Gaps = 38/210 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K A+ +G+ GT Y G+Q+Q ++ TIEG++ A+ KAG I N + K+ R+
Sbjct: 69 KRKCAVIIGFCGTGYNGMQIQ-PHGNVKTIEGDIFVAMIKAGVISPDNSTDPGKVNLQRA 127
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD VH+ +I LKM + D P D+ +++N HLP +I+++ + +Q SFD
Sbjct: 128 ARTDASVHAAFNVISLKMIV------DLPDTPDIVEKINEHLPNHIRIWGFVRTQNSFDA 181
Query: 197 RRECNLRKYSYLLPAEVI---------------------------GINSQLT---AAEID 226
R C+ R Y YLLP+ V I S +T A ID
Sbjct: 182 RTSCDSRSYEYLLPSYVFIPPSPWSNLGKRLKSSHPFWEGVDETEDIASMMTRKRAYRID 241
Query: 227 SHISD-FNAILNEFEGEHPFHNYTERSKYR 255
S D L +FEG H F +YT +R
Sbjct: 242 SDTLDRARETLAQFEGSHNFWSYTIGKGFR 271
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + G+SFMLHQIRKM+ V V R P ++ + IV+P AP L
Sbjct: 292 GNEWISVRFYGQSFMLHQIRKMIFMLVNVVRTGTPASLIPTTYTDLP-IVVPKAPGLGLL 350
Query: 440 LRANSFSV 447
L F+V
Sbjct: 351 LEKPHFNV 358
>gi|330835922|ref|XP_003292011.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
gi|325077781|gb|EGC31472.1| hypothetical protein DICPUDRAFT_156689 [Dictyostelium purpureum]
Length = 539
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK AL GY GT + GL +D IE +E ALF G I SN G+L +I W+RS
Sbjct: 126 KKPFALCFGYDGTGFYGLSYNKD-LKYKAIENAIEKALFINGHIAPSNVGDLSRIKWSRS 184
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVHSL+T+I + + + + + + +N HLP ++++ S +SF
Sbjct: 185 SRTDKGVHSLSTLISCFILVDEKTNQREGLSKETIESINKHLPESVRLLSGTRISKSFRA 244
Query: 197 RRECNLRKYSYLLPAEVI-GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT-ERSKY 254
RR R Y Y++P + + GI+ I N IL+ + G +HNYT +R+ Y
Sbjct: 245 RRGVCERTYHYMVPKKYLEGIS-----------IDHMNEILSNYIGNFSYHNYTSQRNTY 293
>gi|297842357|ref|XP_002889060.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334901|gb|EFH65319.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 458
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 103/401 (25%), Positives = 166/401 (41%), Gaps = 68/401 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+ + G Y+G+Q TIEGELE ALF AG + ES G + +ARS+
Sbjct: 22 QKVAIIFAFCGVGYQGMQ---KNPGAKTIEGELEEALFHAGAVPESIRGKPKLYDFARSA 78
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV ++ ++ + + P + D R+N++LP I++F SF +
Sbjct: 79 RTDKGVSAVGQVVSGRFNVDPPGFVD---------RLNSNLPNQIRIFGYKHVTPSFSSK 129
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ C+ R+Y YLLP + A + SH + + GE + + R+
Sbjct: 130 KFCDRRRYVYLLP---------VFALDPISHRDRETVMASLGPGEEYVKCFECSERGRKI 180
Query: 258 PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQN 317
P G +K F + D S S D+ I S+ ++ +
Sbjct: 181 PGLVGNWKGTNFVTKSLDF--------QSDILSN-NSSALRTDVKIEALSSNLASLSSVD 231
Query: 318 SMVSGVHQEDCCNQHANGLKDQNSSSVIRA----RWLYETDEADKLSASHFRKIFSCSCG 373
V + QED C + N + N + A ++ Y E ++ F +I SC G
Sbjct: 232 VEVGSI-QEDSCKLNTNSTEKINGEGNVMAETKSKFCYGEKEKER-----FNRILSCYVG 285
Query: 374 KLE-----------------KSLGF-GYVEISISGESFM----------LHQIRKMVGTA 405
+ + F I++ G F+ LHQIRKM+G A
Sbjct: 286 SYNFHNFTTRTKADDPAANRQIISFTANTVINLDGIDFIKCEVLGKSFMLHQIRKMMGLA 345
Query: 406 VAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
VA+ R ++ + +K I +P+AP L+L F+
Sbjct: 346 VAIMRNCASESLIQTAFSKDVNITVPMAPEVGLYLDECFFT 386
>gi|302809155|ref|XP_002986271.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
gi|300146130|gb|EFJ12802.1| hypothetical protein SELMODRAFT_44320 [Selaginella moellendorffii]
Length = 363
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+A+ V Y G Y+G+Q + TIEG+LE ALFKAG I ES +G+ +KI WAR++
Sbjct: 1 RKIAIFVSYSGYGYQGMQRNK---GCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAA 57
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV + ++ + + P + +RVN+HLP+ I+V +F +
Sbjct: 58 RTDKGVSAAGQVVSGRFFVDPPGF---------VERVNSHLPKQIRVLGFTRVTGTFSAK 108
Query: 198 RECNLRKYSYLLP 210
C+ R+Y Y+LP
Sbjct: 109 NLCDRRRYEYVLP 121
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S G++ G +V ++ G+SFMLHQIRKM+G AVAV R P I + +
Sbjct: 224 RYITSYEAGEVFTIQGCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRR 283
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
++I +P+AP LFL ++ + E ++ E K + EF T V P ++
Sbjct: 284 DTKIGVPMAPELGLFLDECLYTAYNQRFAGSHEEVSLKSFE---KEIAEFKTEVIYPHIA 340
Query: 485 KFLDATKSPWTEWIENLEK 503
+A + W+ L K
Sbjct: 341 S-TEAKDGVFARWLHGLTK 358
>gi|302806719|ref|XP_002985091.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
gi|300147301|gb|EFJ13966.1| hypothetical protein SELMODRAFT_44317 [Selaginella moellendorffii]
Length = 363
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 12/133 (9%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+A+ V Y G Y+G+Q + TIEG+LE ALFKAG I ES +G+ +KI WAR++
Sbjct: 1 RKIAIFVSYSGYGYQGMQRNK---GCKTIEGDLEEALFKAGAIAESTFGDPRKIDWARAA 57
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGV + ++ + + P + +RVN+HLP+ I+V +F +
Sbjct: 58 RTDKGVSAAGQVVSGRFFVDPPGF---------VERVNSHLPKQIRVLGFTRVTGTFSAK 108
Query: 198 RECNLRKYSYLLP 210
C+ R+Y Y+LP
Sbjct: 109 NLCDRRRYEYVLP 121
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S G++ G +V ++ G+SFMLHQIRKM+G AVAV R P I + +
Sbjct: 224 RYITSYEAGEVFTIQGCKFVRCTVIGQSFMLHQIRKMIGLAVAVMRGDAPETIFERAFRR 283
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
++I +P+AP LFL ++ + E ++ E K + EF T V P ++
Sbjct: 284 DTKIGVPMAPELGLFLDECLYTAYNQRFAGSHEEVSLKSFE---KEIAEFKTEVIYPHIA 340
Query: 485 KFLDATKSPWTEWIENLEK 503
+A + W+ L K
Sbjct: 341 S-TEAKDGVFARWLHGLTK 358
>gi|320583409|gb|EFW97622.1| tRNA pseudouridine synthase [Ogataea parapolymorpha DL-1]
Length = 491
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 14/147 (9%)
Query: 64 TPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRES 123
TP D++ +P KKKVA + Y GT Y G+QM TIEG+L A KAG I ++
Sbjct: 67 TPKYEDEERKP--KKKVACYLSYCGTGYHGMQMN---PPAKTIEGDLFDAFVKAGAISKN 121
Query: 124 NYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
N +L+K ++ R++RTDKGVH+ +I LK+ I +DP DL +++N++LP I+
Sbjct: 122 NSNDLKKSSFMRAARTDKGVHAAGNVISLKLII------EDP---DLVEKINSYLPDQIR 172
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLP 210
+ +SFD R+ C+ R Y YL+P
Sbjct: 173 FWGYERVNKSFDCRKVCSSRIYEYLMP 199
>gi|260817697|ref|XP_002603722.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
gi|229289044|gb|EEN59733.1| hypothetical protein BRAFLDRAFT_93048 [Branchiostoma floridae]
Length = 352
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 20/216 (9%)
Query: 45 PASSSSKSSPSVSHTLTRPTPNSSDDKWE--PVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
PA SS++ P+ +T P D WE +K+KVA + Y G Y G MQR++
Sbjct: 9 PAHLSSQT-PTDENTRGESKPGGDPD-WERPTAKKRKVACLLAYSGVGYMG--MQRNQ-G 63
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
TIE +L A +KAG I + + +QK+ + R +RTDKGV + ++ LKM + DA
Sbjct: 64 FKTIEEDLLAAFYKAGAIPKDHMDCMQKMHFQRCARTDKGVSAAGQIVSLKMYMIEDA-- 121
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
+++N L +I++ I + FD + C+ R Y Y+LP + T
Sbjct: 122 --------VQKINDCLAESIRLIGIKRTTNGFDSKNACDARTYMYVLPTYSFAPTKEETE 173
Query: 223 AEI---DSHISDFNAILNEFEGEHPFHNYTERSKYR 255
+ D + N +L+ ++G H FHN+T K++
Sbjct: 174 QDFRATDDVMEKVNDVLSAYKGTHNFHNFTSGKKFK 209
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 386 ISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
ISI G+SFM+HQIRKM+G +A+ R L PR +L + + + +P AP L L F
Sbjct: 236 ISIKGQSFMIHQIRKMIGMMLAIVRGLAPRSMLERAW-QEGKCDIPKAPGLGLVLDKVHF 294
Query: 446 SVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSK 485
R + +E +E + V++F P + K
Sbjct: 295 DHYNRK-YGGDGLHEALEWDEHQETVEKFKEQYIYPTIIK 333
>gi|354543006|emb|CCE39724.1| hypothetical protein CPAR2_601440 [Candida parapsilosis]
Length = 554
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 10/135 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K A+ +GY GT Y GLQ+Q +E + TIE +L A +KAG I N +L+K + R+
Sbjct: 89 KRKCAVMLGYCGTGYNGLQIQ-NEPGVKTIEKDLYEAFYKAGAISLENSLDLKKSGFQRT 147
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP L ++N++LP I+++ I + + FD
Sbjct: 148 ARTDKGVHAAGNVVSLKLII------EDP---QLKDKINSYLPDQIRIWGIQRTTKGFDC 198
Query: 197 RRECNLRKYSYLLPA 211
R+ C+ R Y YLLP
Sbjct: 199 RKMCSSRVYEYLLPT 213
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I + G+SFMLHQIRKM+ A R LP D++ + ++I +P AP+ L L
Sbjct: 386 WISIKLHGQSFMLHQIRKMICMATLAIRCDLPSDMIA-DCFQPTKINIPKAPALGLLLEN 444
Query: 443 NSF 445
F
Sbjct: 445 PVF 447
>gi|149236317|ref|XP_001524036.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452412|gb|EDK46668.1| tRNA pseudouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 445
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 10/127 (7%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GT Y GLQ+Q D ++ TIE +L TAL KAG I N +L+K + R +RTDKGV
Sbjct: 2 LGYCGTGYNGLQIQNDP-NVKTIERDLYTALHKAGAISLENSLDLKKSGFQRCARTDKGV 60
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ ++ LKM I +DP ++ +++N HLP+ I+++ I + + FD R+ C+ R
Sbjct: 61 HAAGNVVSLKMII------EDP---EIKEKINEHLPQQIRIWGIQRTTKGFDCRKMCSSR 111
Query: 204 KYSYLLP 210
Y YLLP
Sbjct: 112 VYEYLLP 118
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I G+SFMLHQIRKM+ A R LP + L K ++ +P AP+ L L
Sbjct: 291 WVSVKIHGQSFMLHQIRKMICMAALTVRCKLPAEKLLAMCFKPEKLNIPKAPALGLLLEN 350
Query: 443 NSFSVRTR 450
F +
Sbjct: 351 PVFDAYNK 358
>gi|383863471|ref|XP_003707204.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Megachile rotundata]
Length = 399
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 108/215 (50%), Gaps = 42/215 (19%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+++D + V++K + +GY+G +Y G+Q+ R TIE L TAL +A I + +
Sbjct: 39 ATEDAMQKVKRKNFVIMMGYLGGNYFGMQINR---GTKTIEESLLTALLEANYITKDQFE 95
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
++++I + R++RTDKGV ++ ++ LK+ P + K+D +N HLP++I+VF
Sbjct: 96 DIREIRFQRAARTDKGVSAVRQIVSLKL--PHNVNKED---------INKHLPKDIRVFG 144
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIG-------------------INSQLTAAEIDS 227
+ + F+ + +C+ R Y Y+LP + QL+ +
Sbjct: 145 VKRVTKGFNSKNQCDARTYRYVLPTFALAPEHPDFLQLGDEEEVDEDTRRKQLSTINGEP 204
Query: 228 H---------ISDFNAILNEFEGEHPFHNYTERSK 253
+ ++D N L EG H FHN+T R+K
Sbjct: 205 YNRFRLSTKMLNDLNETLKLLEGTHNFHNFTSRTK 239
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 368 FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSR 427
F C + + F +E+ G+SFMLHQIRKMV + + R +L D L + +K +
Sbjct: 252 FRCIETFIVNDMEFAVLEVK--GQSFMLHQIRKMVTLVIGISRNILKNDFLKEAFSK-EK 308
Query: 428 IVLPLAP 434
+P AP
Sbjct: 309 YSIPTAP 315
>gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum]
Length = 588
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 18/185 (9%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E ++++K A+ +GY GT+Y G MQR+ ++ TIE E AL+K I E N+ +Q +
Sbjct: 250 EKIKRRKFAVLLGYSGTNYYG--MQRNPNT-PTIEEEFFKALYKNNYISEENFTQVQTMQ 306
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
+ R++RTDKGV + ++ LK+ ++D ID++K +N LP I+VF I +
Sbjct: 307 FQRAARTDKGVSAARQVVSLKL-------RED---IDISK-INEQLPEVIRVFGIRRVTK 355
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPFHNY 248
F+ + +C+ R Y+YLLP + QL + DS ++ N +L ++ G FHN+
Sbjct: 356 GFNSKVQCDSRSYTYLLPTVSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNF 415
Query: 249 TERSK 253
T + +
Sbjct: 416 TSKKQ 420
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA + K C ++ + F I I G+SFMLHQIRKMVG +AV + D L
Sbjct: 425 SAKRYMKTLICEKPFVKDDVEFAL--IKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD 482
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
L+ ++ +P AP L L
Sbjct: 483 LAFG-MDKVNIPKAPGLGLLL 502
>gi|268568248|ref|XP_002647980.1| C. briggsae CBR-PUS-1 protein [Caenorhabditis briggsae]
Length = 437
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++ K A+ +GY G Y G+Q+Q+D L TIE +L A+ KAG I + +
Sbjct: 30 VKQAKYAMLLGYQGKKYYGMQLQKD---LPTIESKLLEAMEKAGWITAAQREKPFDFFFQ 86
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTD+ V S A +C M++P D D+ Y +D +N LP +I+VF + + F
Sbjct: 87 RAARTDRAV-SAARQMC-GMQLPRD---DEKYKVDGPGILNNLLPNDIRVFGMKRTINFF 141
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
P+++C+ R YSY P V ++LT A +++ N IL+ ++G H F NYT +
Sbjct: 142 HPQKQCDYRTYSYTCPTFVFAKPTELTNAAFRISKETLAEVNDILSIYKGTHNFFNYTAK 201
Query: 252 SKY 254
Y
Sbjct: 202 RAY 204
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+++I + G+SF+LHQIRKMVG + V R+L + + S + R+ +P+AP L L
Sbjct: 235 FIQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRSF-EGQRMDIPMAPGLGLLLER 293
Query: 443 NSF 445
+
Sbjct: 294 THY 296
>gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum]
Length = 390
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 18/185 (9%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E ++++K A+ +GY GT+Y G MQR+ ++ TIE E AL+K I E N+ +Q +
Sbjct: 52 EKIKRRKFAVLLGYSGTNYYG--MQRNPNT-PTIEEEFFKALYKNNYISEENFTQVQTMQ 108
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
+ R++RTDKGV + ++ LK+ ++D ID++K +N LP I+VF I +
Sbjct: 109 FQRAARTDKGVSAARQVVSLKL-------RED---IDISK-INEQLPEVIRVFGIRRVTK 157
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPFHNY 248
F+ + +C+ R Y+YLLP + QL + DS ++ N +L ++ G FHN+
Sbjct: 158 GFNSKVQCDSRSYTYLLPTVSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNF 217
Query: 249 TERSK 253
T + +
Sbjct: 218 TSKKQ 222
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA + K C ++ + F I I G+SFMLHQIRKMVG +AV + D L
Sbjct: 227 SAKRYMKTLICEKPFVKDDVEFAL--IKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLD 284
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
L+ ++ +P AP L L
Sbjct: 285 LAFG-MDKVNIPKAPGLGLLL 304
>gi|395332022|gb|EJF64402.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 563
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/235 (30%), Positives = 108/235 (45%), Gaps = 52/235 (22%)
Query: 63 PTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
PT + K + K++ AL +G+ G Y G+Q+Q D L TIEG L AL K G + +
Sbjct: 112 PTTEDGEPKAPRLPKRQCALLIGFCGDGYNGMQIQPDP-KLRTIEGVLFDALIKVGAVSK 170
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLP 179
N N K+ R++RTD GVH+ ++ +K+ IP G+ DL R+N LP
Sbjct: 171 DNSDNPTKVKLGRAARTDAGVHAAGNVVSMKLINVIP---------GVPDLVARINEELP 221
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI-------GINSQL--TAAEIDSH-- 228
I+++SIL Q SF+ R C+ RKY+Y P+ ++ G+ + L AE +H
Sbjct: 222 PEIRLWSILRVQNSFNARTTCDSRKYTYFFPSYLMIPPKPGSGLYNTLKSQGAEPPAHPF 281
Query: 229 ----------------------------ISDFNAILNEFEGEHPFHNYTERSKYR 255
++ +FEG H FHN+T +R
Sbjct: 282 WDRVDAEQQASPQDDLRRKRAYRIAPEQLASLREAATKFEGSHNFHNFTVGRDFR 336
>gi|324505293|gb|ADY42276.1| tRNA pseudouridine synthase A [Ascaris suum]
Length = 491
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 116/238 (48%), Gaps = 19/238 (7%)
Query: 27 FSNKISAVNLLPLSCYRCPASSSSKSSPSV--SHTLTRPTPNSSDDKWEPVRKK-----K 79
F N+IS + + + P S + V RP P+++++ EPV+K+ +
Sbjct: 4 FLNRISRLVMAEIKEACTPLSEGGVDASKVITDKVEKRPHPSTTNEDGEPVKKRWKKRTR 63
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
A+ + Y G +Y G+Q+Q+D TIEG L A+ K G I + + R++RT
Sbjct: 64 YAMLIAYQGKNYCGMQVQKD---APTIEGCLLNAMQKYGLITDEEVIKPNLFFFQRAART 120
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
D+ V ++ M + + K P +N LP +I+V I + R+F+ +++
Sbjct: 121 DRAVSAVRQMCSMMLNFDEQLPKTVP------DELNKLLPEDIRVMGIRRATRTFNAQKD 174
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAE---IDSHISDFNAILNEFEGEHPFHNYTERSKY 254
C+ R YSY LP +LT++ D I++ NA+L F G H F NYT + ++
Sbjct: 175 CDARTYSYTLPTYAFAKVDELTSSAYRITDETINEINALLQIFVGTHNFFNYTSKREF 232
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 362 SHFRKIFSCSCG-----KLE-KSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPR 415
S FR I CG K E ++ ++ ISI G+SFMLHQIRKM+G +A+ R LL +
Sbjct: 236 SCFRYIIDFKCGAKFLFKNELRNEDVEFLTISIKGQSFMLHQIRKMIGMVIAISRGLLYK 295
Query: 416 DILTLSLAKHSRIVLPLAPSEVLFL 440
+ S + +R+ +P AP L L
Sbjct: 296 SDIQRSF-ESARMDVPKAPGLGLLL 319
>gi|308813608|ref|XP_003084110.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
gi|116055993|emb|CAL58526.1| tRNA pseudouridylate synthase (ISS) [Ostreococcus tauri]
Length = 450
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 29/186 (15%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAW 133
P +K+K AL YVG Y G MQR+ + TIEGELE A+ +AGGI ++N G+ K+ W
Sbjct: 38 PNKKRKCALTFAYVGAGYAG--MQRNP-GVRTIEGELEGAIARAGGISDANAGDFAKVQW 94
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
R++RTDKGV ++ +I LKM + PD + R+N LP +VF I
Sbjct: 95 TRAARTDKGVSAVGQVIALKMVMEPDG---------MLARINEALPERFEVFGI------ 139
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI------SDFNAILNEFEGEHPFHN 247
+ Y Y++P N + AE + +L + G H FHN
Sbjct: 140 -----DRVTGGYEYVIPTWAFDPNLFVEGAEKEKFTFTEETRRRVERVLGNYCGTHNFHN 194
Query: 248 YTERSK 253
YT + K
Sbjct: 195 YTVKVK 200
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S C + + G +V + G+SFMLHQIRK++GT +AV R L D ++
Sbjct: 208 RYILSFECSQPFEVDGEEFVRCEVVGQSFMLHQIRKLIGTMLAVMRGTLDEDDQKFAILS 267
Query: 425 HSRIVLPLAPSEVLFL 440
H + P+AP LFL
Sbjct: 268 HQFVPTPMAPELGLFL 283
>gi|343426672|emb|CBQ70201.1| related to PUS1-pseudouridine synthase 1 [Sporisorium reilianum
SRZ2]
Length = 570
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 77/138 (55%), Gaps = 6/138 (4%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA++ GY G Y GLQ+ + TIEG++ A AG + N N K+ R+
Sbjct: 93 KRKVAVKFGYCGIGYSGLQIN---PGVKTIEGDIFQAFCTAGAVSADNAVNPNKVGLQRA 149
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ ++ LK+ + PD ++ G L RVNA LP I+V+ + Q F
Sbjct: 150 ARTDRGVHAAGNLLSLKLILQPDGLQE---GETLVDRVNALLPEFIRVWGVTRVQNGFSA 206
Query: 197 RRECNLRKYSYLLPAEVI 214
R+ C+ R Y YLLP V
Sbjct: 207 RQSCDSRMYEYLLPTYVF 224
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I G+SFMLHQIRKM+G V V R ++ +R+ +P AP L L
Sbjct: 338 WVSIKFHGQSFMLHQIRKMIGLLVLVGRTGAGEGLVDECFGP-ARVHIPKAPGLGLLLEQ 396
Query: 443 ---NSFSVRTR 450
++++ R R
Sbjct: 397 PIFDAYNTRIR 407
>gi|67539990|ref|XP_663769.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|40738761|gb|EAA57951.1| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4]
gi|259479643|tpe|CBF70055.1| TPA: tRNA pseudouridine synthase, putative (AFU_orthologue;
AFUA_2G08460) [Aspergillus nidulans FGSC A4]
Length = 574
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 83/135 (61%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL TA AG I ++N + +K + R
Sbjct: 78 KKKVAVLIGYSGTGYKGMQLSTTE---KTIEGELFTAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP D+ +++N HL I+V+ IL + +SF
Sbjct: 135 ARTDKGVHAAGNIVSLKLIV------EDP---DIVQKINDHLSPQIRVWGILVANKSFSS 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRIYEYLIPS 200
>gi|392574501|gb|EIW67637.1| hypothetical protein TREMEDRAFT_14084, partial [Tremella
mesenterica DSM 1558]
Length = 433
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 5/135 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK+VAL +GY GT Y G+Q+Q E TIEGEL AL KAG + N + +K+ R+
Sbjct: 8 KKRVALLIGYCGTGYSGMQIQPGE--AETIEGELFQALVKAGAVSSDNSNDHRKVDVQRA 65
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD GVH+ + LKM I P P L VN++LP+ I+++ + +SFD
Sbjct: 66 ARTDAGVHAAGNCVSLKMIINPVL---PPEHETLKSLVNSYLPKQIRMWGFVRCIKSFDA 122
Query: 197 RRECNLRKYSYLLPA 211
R C+ R Y YLLP+
Sbjct: 123 RTSCDSRIYEYLLPS 137
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIRKM+ AV R P I++ + RI +P AP L L A
Sbjct: 259 WISVQIHGQSFMLHQIRKMISMAVLACRTGTPAKIISETYGS-KRIHIPKAPPLGLLLEA 317
Query: 443 NSF 445
F
Sbjct: 318 PQF 320
>gi|393910108|gb|EJD75741.1| tRNA pseudouridylate synthase Lsp1 [Loa loa]
gi|393910109|gb|EJD75742.1| tRNA pseudouridylate synthase Lsp1, variant [Loa loa]
Length = 517
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 17/200 (8%)
Query: 64 TPNSSDDKWEPVRKKK-----VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
+ ++SD EPVRK + AL + Y G Y G+Q+Q+D T+EGEL A+ K G
Sbjct: 83 SDSASDVNGEPVRKSRRKEYSYALLLAYQGKKYNGMQVQKD---FPTVEGELFKAMAKCG 139
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAH 177
I E + + + A+ R++RTD+ V S A +C M + P+ + Y + A ++NA
Sbjct: 140 YISEDDILSPVRFAFQRAARTDRSV-SAARQMC-SMRLAPE---NHEYFLKTASDKLNAQ 194
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNA 234
LP I+V + + RSF + C+ R YSY LP+ +LT + ++ +++ N
Sbjct: 195 LPEEIRVMGVRRATRSFKAHKNCDKRTYSYTLPSYAFARADELTNSAFRISETSVTELND 254
Query: 235 ILNEFEGEHPFHNYTERSKY 254
+L ++G H F NYT Y
Sbjct: 255 LLALYKGTHNFFNYTSGRTY 274
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 362 SHFRKIFSCSCGK---LEKSLGFGYVE---ISISGESFMLHQIRKMVGTAVAVKRKLLPR 415
S+ R I CG +E + G VE + ++G+SFMLHQIRKM+G VA R L +
Sbjct: 278 SNMRYIHDFKCGPTQLVEDKVRGGMVEFISLYVTGQSFMLHQIRKMIGMTVATFRGLCGK 337
Query: 416 DILTLSLAKHSRIVLPLAPSEVLFL 440
L + + R+ +P AP L L
Sbjct: 338 TELENTF-RSERMDVPKAPGLGLVL 361
>gi|302308519|ref|NP_985445.2| AFL105Cp [Ashbya gossypii ATCC 10895]
gi|442570003|sp|Q755C8.2|PUS1_ASHGO RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|299790670|gb|AAS53269.2| AFL105Cp [Ashbya gossypii ATCC 10895]
Length = 528
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+S++K + K+KVA+ VGY GT Y G+Q TIE EL A KAG I +N
Sbjct: 56 TSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNR---TIEAELFEAFVKAGAISRANST 112
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+L+K + R++RTDKGVH+ +I LK+ I A KD ++N HLP I+V+
Sbjct: 113 DLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKD---------KINEHLPPGIRVWG 163
Query: 187 ILPSQRSFDPRRECNLRKYSYLLP 210
I ++FD R+ C R Y YLLP
Sbjct: 164 ISRVNKAFDCRKLCGSRWYEYLLP 187
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A V R + + S +I +P AP+ L L +
Sbjct: 338 WVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQ-KINIPKAPALGLLLES 396
>gi|374108673|gb|AEY97579.1| FAFL105Cp [Ashbya gossypii FDAG1]
Length = 528
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+S++K + K+KVA+ VGY GT Y G+Q TIE EL A KAG I +N
Sbjct: 56 TSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNR---TIEAELFEAFVKAGAISRANST 112
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+L+K + R++RTDKGVH+ +I LK+ I A KD ++N HLP I+V+
Sbjct: 113 DLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKD---------KINEHLPPGIRVWG 163
Query: 187 ILPSQRSFDPRRECNLRKYSYLLP 210
I ++FD R+ C R Y YLLP
Sbjct: 164 ISRVNKAFDCRKLCGSRWYEYLLP 187
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A V R + + S +I +P AP+ L L +
Sbjct: 338 WVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQ-KINIPKAPALGLLLES 396
>gi|47208274|emb|CAF91572.1| unnamed protein product [Tetraodon nigroviridis]
Length = 375
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
S +D+ P KKKVAL + Y G Y G+Q TIE +L AL K+G I E++
Sbjct: 65 QSQEDRRYP--KKKVALLLAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPENHA 122
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
+++K+++ R +RTDKGV + ++ LK+ W D DLA+++N HLP I+V
Sbjct: 123 EDMKKMSFQRCARTDKGVSAAGQVVSLKL------WLID----DLAEKINQHLPPQIRVL 172
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEF 239
+ + F+ + C+ R Y+Y+LP A++ S + N + +
Sbjct: 173 GVKRVTQGFNSKNNCDARTYAYMLPTVAFAPKDSDAASDAASFRLQPETLQRVNRLFALY 232
Query: 240 EGEHPFHNYT 249
+G H FHN+T
Sbjct: 233 KGTHNFHNFT 242
>gi|241956578|ref|XP_002421009.1| tNA-uridine isomerase, putative; tRNA pseudouridine synthase,
putative; tRNA pseudouridylate synthase, putative
[Candida dubliniensis CD36]
gi|223644352|emb|CAX41165.1| tNA-uridine isomerase, putative [Candida dubliniensis CD36]
Length = 488
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 84/135 (62%), Gaps = 10/135 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY G+ Y G+Q+Q D + + TIE ++ A+ KAG I N +L+K + R+
Sbjct: 38 KRKVAVMLGYCGSGYNGMQVQNDPN-VKTIEKDIYDAMTKAGAISLENSVDLKKSGFQRA 96
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP ++ ++N LP+ I+++ I + + FD
Sbjct: 97 ARTDKGVHAAGNVISLKMII------EDP---NIINKINDLLPKQIRIWGIQRTTKGFDC 147
Query: 197 RRECNLRKYSYLLPA 211
R+ C+ R Y YLLP
Sbjct: 148 RKCCSSRIYEYLLPT 162
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ I I G+SFMLHQIRKM+ A + R LP +I+ + + +I +P AP+ L
Sbjct: 316 GTEWISIKIHGQSFMLHQIRKMIAMATLIIRLNLPSNIIN-NFFQSKKINIPKAPALGLL 374
Query: 440 LRANSF 445
L F
Sbjct: 375 LENPVF 380
>gi|50548607|ref|XP_501773.1| YALI0C12749p [Yarrowia lipolytica]
gi|74635069|sp|Q6CC39.1|PUS1_YARLI RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49647640|emb|CAG82083.1| YALI0C12749p [Yarrowia lipolytica CLIB122]
Length = 528
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 89/146 (60%), Gaps = 14/146 (9%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P +D+ +P K+KVA +GY GT Y G+Q+ + TIEG++ A KAG I ++N
Sbjct: 74 PLVADEVRQP--KRKVACMIGYCGTGYHGMQLNPPQ---KTIEGDIFQAFVKAGAISQNN 128
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+ +K A+ R++RTDKGVH+ +I LKM I + ++ +++N+HLP ++V
Sbjct: 129 ADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDE---------NIVEKINSHLPEQLRV 179
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ + + ++F+ R+ C+ R Y YL+P
Sbjct: 180 WGVSRTNKAFECRKLCSSRVYEYLMP 205
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVG-TAVAVKRKLLPRDILTL 420
S R + S +C G +V I I G+SFMLHQIRKM+ A++V+ P+ ++
Sbjct: 337 SAMRTMKSLTCSDPFLIDGTEWVSIKIHGQSFMLHQIRKMISMVALSVRCNADPQKLIPQ 396
Query: 421 SLAKHSRIVLPLAPSEVLFL 440
+ K +RI +P AP+ L L
Sbjct: 397 TFEK-ARINIPKAPALGLLL 415
>gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
Length = 410
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 100/206 (48%), Gaps = 18/206 (8%)
Query: 54 PSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETA 113
P T N +D+ +RK+ VAL + Y G++Y G+Q D TIE EL A
Sbjct: 50 PQSKRLCTENIENDLNDQKLKIRKRNVALLMAYNGSNYHGMQKNLD---FKTIEYELLNA 106
Query: 114 LFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR 173
L KA I NL I + R++RTDKGV + ++ K+ + + ++ +
Sbjct: 107 LVKANLIPSEAIDNLPLIHFQRAARTDKGVSAAKQVVSFKIA--------ENFQVE---K 155
Query: 174 VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG---INSQLTAAEIDS-HI 229
+N LP +I+VFSI + F+ + +C R YSY LP + + ID I
Sbjct: 156 INMFLPEDIRVFSIKRVTKGFNCKNQCTARTYSYTLPTFALAPEFHDEYPKNYRIDKLTI 215
Query: 230 SDFNAILNEFEGEHPFHNYTERSKYR 255
N IL+++ G HPFHN+T + R
Sbjct: 216 QKTNEILSQYLGTHPFHNFTSKKDGR 241
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + + G+SFMLHQIRKMVG +AV + I + + + ++ LP+AP L L
Sbjct: 265 FITLKVKGQSFMLHQIRKMVGYTIAVMKGFASEAIQS-KIWTNEKVSLPMAPGLGLVL 321
>gi|443897972|dbj|GAC75310.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 649
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA++ GY G Y GLQ+ + TIEG++ A AG + + N N K+ R+
Sbjct: 193 KRKVAVKFGYCGIGYSGLQIN---PGVKTIEGDIFDAFCTAGAVSKDNAVNPNKVGLQRA 249
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ ++ LK+ + PD ++ G L +VN+ LP I+++ + Q F+
Sbjct: 250 ARTDRGVHAAGNLLSLKLILQPDGLQE---GETLVDKVNSLLPEFIRIWGVTRVQNGFNA 306
Query: 197 RRECNLRKYSYLLPAEVI 214
R+ C+ R Y YLLP V
Sbjct: 307 RQSCDSRMYEYLLPTYVF 324
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 358 KLSASHFRKIFSC-------SCGKLEKSLGFG---------YVEISISGESFMLHQIRKM 401
K S SH F+ SC + K+L +V I + G+SFMLHQIRKM
Sbjct: 404 KFSGSHNFHNFTVGKEFRDRSCQRFMKTLTISPTKVIGDCEWVSIKLHGQSFMLHQIRKM 463
Query: 402 VGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF-SVRTRPGVTRPEMQT 460
VG V V R ++ +R+ +P AP L L F + R G ++
Sbjct: 464 VGLLVLVGRSGAGMGLVDECFGP-ARVHIPKAPGLGLLLEQPIFEAYNRRIGNNNDKLTR 522
Query: 461 MVESEEILKMVDEFYTSVTLPEVSKFLDATKSPW 494
+++ + + DE V + + + K W
Sbjct: 523 LMKKSDNPGLQDELREGVGYKDHEEQMAKFKQAW 556
>gi|399217632|emb|CCF74519.1| unnamed protein product [Babesia microti strain RI]
Length = 455
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 15/144 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQ-----RDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
K K A+ +GY+GT Y G Q Q R E ++ TIEG LE AL + I LQK+
Sbjct: 48 KTKYAMYLGYLGTGYYGFQKQIAFGDRVEETVETIEGTLERALIASNAIYPEFKHRLQKL 107
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
W++++RTDKGVH+ ++ +M I D K N +LP NI + +L
Sbjct: 108 GWSKAARTDKGVHAACMVVGCRMNIAD----------DFLKIFNENLPGNIICYDVLRVT 157
Query: 192 RSFDPRRECNLRKYSYLLPAEVIG 215
+ FD R C+ R Y Y+ P ++G
Sbjct: 158 KGFDARALCSYRNYEYIFPGYLLG 181
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 359 LSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL 418
L+ + +R I S ++E F V +SI G+SF+ +QIRKM+ A+ V R P++ +
Sbjct: 268 LNPASYRYINSIKVSRVECMENF--VRVSIQGQSFLFNQIRKMIAVAIEVFRGSAPKNAI 325
Query: 419 TLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSV 478
L K + + AP++ LFL +F + P+ + ++ E++ + +F
Sbjct: 326 KYCLNKLHSVNVNTAPAQGLFLHHPNFDTYNFHRASPPQTKHIL-FEDVKEQAMQFIKQR 384
Query: 479 TLPEVSKFLDATKSPWTEWIENLEKF 504
PE+ K+ W EW+E + ++
Sbjct: 385 IYPEILKY-----DKWHEWLETINEY 405
>gi|367002137|ref|XP_003685803.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
gi|357524102|emb|CCE63369.1| hypothetical protein TPHA_0E02790 [Tetrapisispora phaffii CBS 4417]
Length = 558
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 83/149 (55%), Gaps = 18/149 (12%)
Query: 69 DDKWEPVR------KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
DD P+ K+KVA+ VGY G Y G+Q TIE EL A +AGGI
Sbjct: 55 DDNGNPIPQEVRKPKRKVAVMVGYCGAGYHGMQYNPPN---DTIESELFRAFVRAGGISL 111
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
+N +L+K + R++RTDKGVH+ +I LKM I +DP D+ ++N LP +I
Sbjct: 112 ANSNDLKKNGFMRAARTDKGVHAGGNLISLKMII------EDP---DIKDKINEALPESI 162
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPA 211
+V++I ++FD R+ C R Y YLLP
Sbjct: 163 RVWNIERVNKAFDCRKMCGSRWYEYLLPT 191
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A + R P + + S +I +P AP+ L L +
Sbjct: 341 WVSIKIHGQSFMLHQIRKMISMATLITRCGCPLERIDASFGPQ-KINIPKAPALGLLLES 399
Query: 443 NSF 445
F
Sbjct: 400 PVF 402
>gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1]
Length = 415
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 100/207 (48%), Gaps = 20/207 (9%)
Query: 46 ASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLST 105
A +++ + RP P +D P R KK AL +G+ GT Y G MQR+ T
Sbjct: 3 AKRGAQADTAGDQAGKRPKP---EDDGRP-RPKKYALLMGFQGTSYAG--MQRN-IGFET 55
Query: 106 IEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDP 165
IE L AL G I ++NY Q + + R +RTDKGVH+ ++ ++M + +
Sbjct: 56 IESTLLRALLVTGCIDKNNYETPQSMHFQRCARTDKGVHAARQVVAMRMILTENT----- 110
Query: 166 YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI 225
+NA LP +I++F + + F+P+ C R+Y YLLP + ++ E
Sbjct: 111 -----VDELNAKLPDDIRIFGAFRTTKGFNPKNACTGRRYEYLLPTYALMPKEKVPVPEY 165
Query: 226 ---DSHISDFNAILNEFEGEHPFHNYT 249
+ ++ F L + G H FHN+T
Sbjct: 166 RVDEPKLTWFRETLKRYIGTHKFHNFT 192
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I + G+SF+LHQIRKM+G AVA+ R + D + + R+ +P P LF
Sbjct: 219 GIEWVRIQVKGQSFILHQIRKMIGLAVAIVRGHVKDDYMDRCFSD-ERVDVPKIPGLGLF 277
Query: 440 LRANSF 445
L F
Sbjct: 278 LDCVFF 283
>gi|328780691|ref|XP_624092.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Apis
mellifera]
Length = 389
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 102/199 (51%), Gaps = 42/199 (21%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
+ +GY+G +Y G+Q+ R + TIEG L +AL KA I ++ + +L++I + R++RTD
Sbjct: 50 VMVLGYLGKNYSGMQINR---GIKTIEGSLLSALLKADFITKNEFEDLKEIKFQRAARTD 106
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
KGV ++ ++ L ++P K+D +N HLP++IKVF I R+F+ + +C
Sbjct: 107 KGVSAVRQIVSL--QLPNHVNKED---------INKHLPKDIKVFDIKRVTRNFNSKNKC 155
Query: 201 NLRKYSYLLPAEVIG--------------------------INSQ-LTAAEIDSHISD-F 232
+ R Y Y+LP + I+ + ++S + D
Sbjct: 156 DARTYRYVLPTFALASEDPSFLQMDKEEEIDEEKRLEKLSMIDGKPYNEFRLNSDMLDKL 215
Query: 233 NAILNEFEGEHPFHNYTER 251
N IL FEG H FHN+T +
Sbjct: 216 NEILKLFEGTHNFHNFTSK 234
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS----RIVLPLAPSEVL 438
+V + + G+SFMLHQIRKMV + + R+I+T+ K + ++ +P+AP L
Sbjct: 262 FVVLEVQGQSFMLHQIRKMVSLIIGI-----CRNIITIDFVKDAFSLEKVDIPIAPGLGL 316
Query: 439 FLRANSFSVRT-RPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
L ++ R G + M++ E + +++FY L ++
Sbjct: 317 SLHFVHYTYYNERYG--KDGFHEMLDWNECNEEIEKFYKEYILKYIT 361
>gi|150865014|ref|XP_001384060.2| hypothetical protein PICST_58964 [Scheffersomyces stipitis CBS
6054]
gi|149386270|gb|ABN66031.2| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 476
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 93/169 (55%), Gaps = 16/169 (9%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
R +SS+ +P V +P P S E K+KVA+ +GY GT Y G+Q+Q D
Sbjct: 51 RLLTFNSSEFTPLVDSD-GKPLPKS-----ERKPKRKVAVMIGYCGTGYNGMQLQNDP-K 103
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
+ TIE +L A AG + N +++K + R++RTDKGVH+ +I LK+ I
Sbjct: 104 IPTIERDLYEAFAAAGAVSPENAMDIKKSGFMRAARTDKGVHAAGNVISLKLII------ 157
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
+DP ++ ++N LP I+++ I +SFD R+ C+ R Y YLLP
Sbjct: 158 EDP---EILAKINEKLPDQIRIWGIQRVTKSFDCRKMCSSRVYEYLLPT 203
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I I G+SFMLHQIRKM+ AV V R P + + ++I +P AP+ L
Sbjct: 356 GTEWVSIKIHGQSFMLHQIRKMIAMAVLVIRTGCPISRIHDCFS-STKINIPKAPALGLL 414
Query: 440 L 440
L
Sbjct: 415 L 415
>gi|341894021|gb|EGT49956.1| CBN-PUS-1 protein [Caenorhabditis brenneri]
Length = 431
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V+ K A+ +GY G Y G+Q+Q+D L TIE +L A+ KAG I + +
Sbjct: 32 VKNAKYAMLLGYQGKKYFGMQLQKD---LPTIESKLLEAMEKAGWITPAQRDKPFDFFFQ 88
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTD+ V ++ M M++P D D Y + A +N LP +I+VF + + F
Sbjct: 89 RAARTDRAVSAVRQMC--GMQLPRD---DAKYQTEGAGILNDLLPADIRVFGMRRTTNFF 143
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
P+++C+ R YSY P+ V ++LT A +++ N IL+ ++G H F NYT +
Sbjct: 144 HPQKQCDYRTYSYTCPSFVFAKPTELTNASYRISPETLAEVNDILSIYKGTHNFFNYTAK 203
Query: 252 SKY 254
Y
Sbjct: 204 RAY 206
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V+I++ G+SF+LHQIRKMVG + V R+L + + S + R+ +P+AP L L
Sbjct: 237 FVQITVKGQSFVLHQIRKMVGMVICVVRELHLKSAIQRSF-EGQRMDIPMAPGLGLLLEQ 295
Query: 443 NSFSVRTR 450
+ R
Sbjct: 296 THYDSYDR 303
>gi|409081331|gb|EKM81690.1| hypothetical protein AGABI1DRAFT_118781 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 550
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 101/217 (46%), Gaps = 55/217 (25%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ AL +G+ G+ Y G+QM L TIEG L AL +AG + + N + K+A AR+
Sbjct: 103 KRQCALLIGFCGSGYNGMQMY--PPPLKTIEGTLFKALVEAGAVSQDNANDPVKVALARA 160
Query: 137 SRTDKGVHSLATMICLK--MEIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ LK M +P GI DL RVN LP I+++ + +Q S
Sbjct: 161 ARTDAGVHAAGNIVSLKMIMHVP---------GIPDLVGRVNELLPPEIRLWGYVRAQNS 211
Query: 194 FDPRRECNLRKYSYLLP--------------------AEVIGINSQL----------TAA 223
F+ R C+ RKY+Y P AE +G N + ++
Sbjct: 212 FNARLACDSRKYTYYFPSYLLIPPKPGSNLHRVLAQHAESLGHNGSILSHSFWDNPNSSK 271
Query: 224 EID-----------SHISDFNAILNEFEGEHPFHNYT 249
E D I+D +F G H FHN+T
Sbjct: 272 EDDMRRKRAWRVTQDRIADLRTAAQKFIGTHNFHNFT 308
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL-- 440
+V + G+SFMLHQ+RKM+ + V R +I+T L K+ +P PS L L
Sbjct: 338 WVSVLFHGQSFMLHQVRKMMSSLVLSCRTNTSPNIVT-ELYKNPDAFIPKMPSLGLLLEE 396
Query: 441 --------RANSFSVRTRPGVTRPEMQTMVESEEILKMVDEF 474
R N+ + + +P P+ + M++ E ++EF
Sbjct: 397 PIFASYNSRMNTVNEKHKP--DSPDYRPMIDFEPYRSQINEF 436
>gi|346472531|gb|AEO36110.1| hypothetical protein [Amblyomma maculatum]
Length = 449
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 13/182 (7%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V+ KK+AL + Y G DY G MQR+ + TIE +L TA++K I+ + Q + +
Sbjct: 66 VKAKKMALCMCYSGKDYLG--MQRNPGT-KTIEEDLLTAMYKGELIQREHIDIPQNVKFQ 122
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV ++ ++ LK+ P + D+ + R+N+HL I+V I + R F
Sbjct: 123 RAARTDKGVSAVRQVVSLKL--PTNIAIDE-----MVARINSHLVDQIRVIDIKRTTRGF 175
Query: 195 DPRRECNLRKYSYLLPAEVI---GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
+ + C+ R YSY+LP+ G+ + + I D N +L F+G H FHN+T
Sbjct: 176 NCKNSCDSRTYSYMLPSFSFAPPGVTPEESFRITSERIQDVNKVLALFKGCHNFHNFTSG 235
Query: 252 SK 253
K
Sbjct: 236 KK 237
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S R I S CG+ + +++I I G+SFMLHQIRKMVG +A+ R + I+ +
Sbjct: 242 SAMRYIISIECGQPFMAGNLEFLQIQIKGQSFMLHQIRKMVGLVIAIMRGHTDQSIIRRA 301
Query: 422 LAKHSRIVLPLAPSEVLFL 440
R+ +P+AP+ L L
Sbjct: 302 WGP-ERLDIPIAPALGLML 319
>gi|238493757|ref|XP_002378115.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
gi|317157361|ref|XP_003190833.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|220696609|gb|EED52951.1| tRNA pseudouridine synthase, putative [Aspergillus flavus NRRL3357]
Length = 601
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 116 KKKVAVLLGYSGTGYKGMQLSATE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 172
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ +++NAHL I+V+ IL + +SF
Sbjct: 173 ARTDKGVHAAGNVVSLKLIVEDE---------DIVQKINAHLSPQIRVWGILVASKSFSS 223
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 224 YQMCDSRIYEYLMPS 238
>gi|169783932|ref|XP_001826428.1| tRNA pseudouridine synthase [Aspergillus oryzae RIB40]
gi|83775172|dbj|BAE65295.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 563
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSATE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ +++NAHL I+V+ IL + +SF
Sbjct: 135 ARTDKGVHAAGNVVSLKLIVEDE---------DIVQKINAHLSPQIRVWGILVASKSFSS 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRIYEYLMPS 200
>gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana)
tropicalis]
Length = 394
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 17/186 (9%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K+K A+ + Y G Y G+QM + TIE L +AL +A I E Y ++++ +
Sbjct: 66 IPKRKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQ 125
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R +RTDKGV +L+ ++ +++ P + +++N+HLP I + + + F
Sbjct: 126 RCARTDKGVSALSQLVSVRLL---------PSCSNPVEKINSHLPPEILIIDMKRVTKGF 176
Query: 195 DPRRECNLRKYSYLLPAEVIGI------NSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
P++ C+ R YSY++P + +S D H + N +L+ ++G H FHN+
Sbjct: 177 CPKKMCDKRSYSYMVPTFALSCCAPSVPDSNFRMPREDFH--NINNLLSFYKGTHNFHNF 234
Query: 249 TERSKY 254
T R +
Sbjct: 235 TSRKAF 240
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S FR + SC + G + +I I+G+SFML+QIRKMVG +A+ + ++P D L
Sbjct: 244 SSFRHMLDVSCSEPFVFHGTEFAQIHITGQSFMLYQIRKMVGLIIAIAQGIVPADFLPQC 303
Query: 422 LAKHSRIVLPLAPSEVLFLRANSFSVRTR----PGVTRPEMQTMVESEEILKMVDEFYTS 477
+ + +I +P AP L L F + G +P + E+ + V F+
Sbjct: 304 MQR-EKINIPPAPGLGLVLERVHFDWYNKRYGGDGFHQP-----ISWEKSMPTVSVFWEE 357
Query: 478 VTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEV 515
LP++ + + + WIE L + + + EV
Sbjct: 358 RILPDILEG-ELENLSMSYWIEKLNRHNFLMFQNYKEV 394
>gi|391869504|gb|EIT78701.1| pseudouridylate synthase [Aspergillus oryzae 3.042]
Length = 563
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSATE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ +++NAHL I+V+ IL + +SF
Sbjct: 135 ARTDKGVHAAGNVVSLKLIVEDE---------DIVQKINAHLSPQIRVWGILVASKSFSS 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRIYEYLMPS 200
>gi|307184937|gb|EFN71202.1| tRNA pseudouridine synthase A [Camponotus floridanus]
Length = 330
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 40/208 (19%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
+ +++K A+ +GY+G DY G MQR+ + TIE +L TAL KA I ++ N++ I
Sbjct: 40 MQKIKRKNHAILLGYLGKDYYG--MQRNP-GMKTIEEDLVTALLKADLITTEHFKNIRSI 96
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
++ R++RTDKGV ++ ++ LK+ PD +N LP IK+F I
Sbjct: 97 SFQRAARTDKGVSAIRQIVSLKLPEKPDKTV-----------INKFLPDVIKIFGIKRVT 145
Query: 192 RSFDPRRECNLRKYSYLLPAEVIG------------IN-----SQLTAAEIDSHI----- 229
+ F+ + +C+ R Y Y++P IN QL+ + S++
Sbjct: 146 KGFNSKNQCDARTYRYIIPTFAFAPEDLTLLKIGEEINEEERIKQLSTIDGKSYVDYRLS 205
Query: 230 ----SDFNAILNEFEGEHPFHNYTERSK 253
+ N+IL EG H FHN+T + K
Sbjct: 206 PESLNRLNSILKLMEGTHNFHNFTSKVK 233
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + S G + + I G+SFMLHQIRKMV V + R ++ +I+ +
Sbjct: 241 RYIIKFHCVETFISNGMEFAILEIKGQSFMLHQIRKMVAVVVGIARNIISEEIINEAFKT 300
Query: 425 HSRIVLPLAPS 435
R+ +P+APS
Sbjct: 301 MDRLEIPIAPS 311
>gi|67481869|ref|XP_656284.1| tRNA pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56473473|gb|EAL50898.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449702618|gb|EMD43222.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 401
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 26/184 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+ YVG Y GL + + TIEGE+E A++KA I E N +L+K+ W+R +RT
Sbjct: 43 VAVIFSYVGRGYFGLMYLNN--NPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCART 100
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGID--LAKRVNAHLPRNIKVFSILPSQRSFDPR 197
DKGV + +I LKM G+D +R+N+ LP I++ ++ SF+ +
Sbjct: 101 DKGVSAANNLISLKM------------GLDGNYIERINSFLPETIRIQDVVKVSHSFNAK 148
Query: 198 RECNLRKYSYLLPAEVIG--------INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y+ P+ I IN + + D I FN++++ + H F NYT
Sbjct: 149 TRVDSRTYEYIFPSYAIQKIDSEHPEINVEYNPQQED--IDYFNSVISNYVKTHNFQNYT 206
Query: 250 ERSK 253
+K
Sbjct: 207 FNTK 210
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 9/166 (5%)
Query: 349 WLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV 408
+ + T E S S+ R I S S ++++ G + +SI G+SFML QIR+M+G A+ +
Sbjct: 205 YTFNTKETKADSKSNNRYIISMSAQLVQRN-GLNVIAVSIHGQSFMLWQIRRMIGFAIVL 263
Query: 409 KRKLLP----RDILTLSLAKHS-RIVLPLAPSEVLFLRANSFSVRTR--PGVTRPEMQTM 461
LP +I+ S + R V+P AP+ LFL F T +T
Sbjct: 264 TNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNNSKTN 323
Query: 462 VESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSI 507
+ SEE LK EF ++ F + + P+ ++++ +T I
Sbjct: 324 INSEETLKKCMEFKEKYIWNDIINF-EKEEQPFAKYMKEQVNYTKI 368
>gi|255719542|ref|XP_002556051.1| KLTH0H03894p [Lachancea thermotolerans]
gi|238942017|emb|CAR30189.1| KLTH0H03894p [Lachancea thermotolerans CBS 6340]
Length = 546
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q TIE EL A +AG I ++N +L+K + R+
Sbjct: 74 KRKVAVMIGYCGTGYHGMQYN---PPTPTIEAELFRAFVEAGAISQANSKDLKKSGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ ++N+ LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNVVSLKLII------EDP---DIIAKINSKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C R Y YLLP
Sbjct: 182 RKLCGSRWYEYLLP 195
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V I I G+SFMLHQIRKM+ A V R P D +T + K +I +P AP+ L L
Sbjct: 346 WVSIKIHGQSFMLHQIRKMISMATLVTRCSCPVDRITDAY-KPQKINIPKAPALGLLL 402
>gi|407039158|gb|EKE39487.1| tRNA pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 403
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 26/184 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+ YVG Y GL + + TIEGE+E A++KA I E N +L+K+ W+R +RT
Sbjct: 45 VAVIFSYVGRGYFGLMYLNN--NPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCART 102
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGID--LAKRVNAHLPRNIKVFSILPSQRSFDPR 197
DKGV + +I LKM G+D +R+N+ LP I++ ++ SF+ +
Sbjct: 103 DKGVSAANNLISLKM------------GLDGNYIERINSFLPETIRIQDVVKVSHSFNAK 150
Query: 198 RECNLRKYSYLLPAEVIG--------INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y+ P+ I IN + + D I FN++++ + H F NYT
Sbjct: 151 TRVDSRTYEYIFPSYAIQKIDSEHPEINVEYNPQQED--IDYFNSVISNYVKTHNFQNYT 208
Query: 250 ERSK 253
+K
Sbjct: 209 FNTK 212
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 9/158 (5%)
Query: 349 WLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV 408
+ + T E S S+ R I S S ++++ G + +SI G+SFML QIR+M+G A+ +
Sbjct: 207 YTFNTKETKADSKSNNRYIISMSAQLVQRN-GLNVITVSIHGQSFMLWQIRRMIGFAIVL 265
Query: 409 KRKLLP----RDILTLSLAKHS-RIVLPLAPSEVLFLRANSFSVRTR--PGVTRPEMQTM 461
LP +I+ S + R V+P AP+ LFL F T +T
Sbjct: 266 TNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNSSKTN 325
Query: 462 VESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIE 499
+ SEE LK EF ++ F + + P+ ++++
Sbjct: 326 INSEETLKKCMEFKEKYIWTDIINF-EKEEQPFAKYMK 362
>gi|336258196|ref|XP_003343916.1| hypothetical protein SMAC_09382 [Sordaria macrospora k-hell]
gi|380087004|emb|CCC14503.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 634
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG+L A KAG I ++N + +K + R
Sbjct: 125 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRC 181
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ A ++ LK+ + + D+ +++N+HLP IKV+ I F
Sbjct: 182 ARTDKGVHAAANVLSLKLIVEDE---------DIVEKINSHLPDQIKVWGIQRVTNGFSC 232
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 233 YQACDSRWYEYLMPS 247
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV + R P ++ S RI +P AP L L
Sbjct: 468 WLSLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLINESYGPR-RISIPKAPGLGLMLER 526
Query: 443 NSFSVRTR 450
F V +
Sbjct: 527 PVFDVSNK 534
>gi|115442996|ref|XP_001218305.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188174|gb|EAU29874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1199
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL TA AG I ++N + +K + R
Sbjct: 78 KKKVAVLLGYSGTGYKGMQLSDTE---KTIEGELFTAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP D+ +++N L I+V+ IL + +SF
Sbjct: 135 ARTDKGVHAAGNVVSLKLIV------EDP---DIVQKINEKLSPQIRVWDILVANKSFSA 185
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 186 YQMCDSRIYEYLIP 199
>gi|156836479|ref|XP_001642300.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
gi|156112794|gb|EDO14442.1| hypothetical protein Kpol_228p5 [Vanderwaltozyma polyspora DSM
70294]
Length = 562
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 83/149 (55%), Gaps = 18/149 (12%)
Query: 69 DDKWEPVRK------KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
DD P+ K +KVA+ VGY GT Y G+Q TIE L A +AG I +
Sbjct: 62 DDNGNPIPKEKRLPKRKVAVMVGYCGTGYHGMQYNPPN---PTIEDALFKAFVQAGAISK 118
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
+N +L+K + R++RTDKGVH+ +I LKM I +DP ++ +++N LP I
Sbjct: 119 ANSNDLKKNGFMRAARTDKGVHAGGNLISLKMII------EDP---EIKQKINEELPNGI 169
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPA 211
KV++I ++FD R+ C R Y YLLP
Sbjct: 170 KVWNIERVNKAFDCRKMCGSRWYEYLLPT 198
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKM+ A V R P ++ + +I +P AP+ L L +
Sbjct: 348 WISIKIHGQSFMLHQIRKMISMATLVTRCGCPVSRISQAYGPQ-KINIPKAPALGLLLES 406
Query: 443 NSF 445
F
Sbjct: 407 PVF 409
>gi|405123828|gb|AFR98591.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 539
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 72 WEP---------VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
WEP + K++ A+ +GY GT Y+G+Q+Q +H+ TIEGE+ AL KAG +
Sbjct: 87 WEPREKTDGEKRLPKRRCAVLIGYCGTGYQGMQIQ--DHTDRTIEGEIFAALVKAGAVSA 144
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI-DLAKRVNAHLPRN 181
N + +K+ AR++RTD GVH+ +I +KM P P G D+A+ VN LP
Sbjct: 145 DNAVDARKVDIARAARTDAGVHAAGNVISIKMITEPPL----PEGFKDVAEYVNTFLPDQ 200
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
I+++ + + +SF+ R + R Y YLLP+
Sbjct: 201 IRMWGWVRTVKSFNARTAADSRIYEYLLPS 230
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIRKM+ A+ R P +L + +I +P AP L L A
Sbjct: 350 WISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGP-KKIHIPKAPPLGLLLEA 408
Query: 443 NSFSV 447
F V
Sbjct: 409 PQFGV 413
>gi|424512964|emb|CCO66548.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 78/136 (57%), Gaps = 9/136 (6%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+KKK+AL GY G Y+G MQR+ + TIE +LE+A+ KAGGI ESN G+ K+ W R
Sbjct: 104 KKKKIALFFGYNGDGYQG--MQRNPGA-KTIEDDLESAIVKAGGIAESNSGDFNKVHWNR 160
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSF 194
++RTDKGV ++ ++ K DD + + +N HLPR I F F
Sbjct: 161 AARTDKGVSAVGQVVSFKC-----MNADDGNTETIVRLINEHLPRGKIVAFGATRVTGGF 215
Query: 195 DPRRECNLRKYSYLLP 210
+ +C+ RKY Y++P
Sbjct: 216 SAKNQCDRRKYEYVVP 231
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R + S SC K G +V+ I G+SF+ + IRK+VG VAV R L +L
Sbjct: 330 RFVISFSCSMPFKIQGEDFVKFEILGQSFLFNMIRKLVGMTVAVARDFCDVSDLLFALRT 389
Query: 425 HSRIVLPLAPSEVLFL 440
R+ P+AP LFL
Sbjct: 390 KQRVNTPMAPELGLFL 405
>gi|342877067|gb|EGU78579.1| hypothetical protein FOXB_10899 [Fusarium oxysporum Fo5176]
Length = 847
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 109/419 (26%), Positives = 182/419 (43%), Gaps = 76/419 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ +E TIE +L A A I ++N + +K + R
Sbjct: 107 KRKVAVMIGYAGTGYKGMQVNGNE---KTIEADLFKAFVAASAISKANADDPKKSSLVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NA LP I+++ I + +F
Sbjct: 164 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINAELPEQIRIWGIQRTNNAFSC 214
Query: 197 RRECNLRKYSY------LLP--------------AEVIGINSQLTAAEIDSHISDFNAIL 236
+ C+ R Y Y LLP A+ G+ +L A D + DF + +
Sbjct: 215 YQTCDSRWYEYLMPSYCLLPPHPESFLGQKLVELAKEHGVEDELAARMED--VKDFWSDV 272
Query: 237 NEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDA-VFSRVEESEGEEDGFSKVEES 295
E E + R P V +R D V +R E ++ E+ E+
Sbjct: 273 EEKEIKPIL--------ARLDPETKAAVLERVHVMDDEEVAARKEAAKETEESAPAEEKP 324
Query: 296 DGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHAN----GLKDQNSSSVI-RARWL 350
E G E ++ E A Q+ +V H+ N+ L+D ++ V + R+
Sbjct: 325 AAETPAGEAAEQTTQPE-AQQSGLVLESHKPK--NRELGPVDFALRDIKAAYVAAKRRYR 381
Query: 351 YETDEADKLSAS--------HF------RKIFSCSCGKLEKSLGFG----------YVEI 386
T+ ++L + +F + F S + KS ++ +
Sbjct: 382 VSTERLNRLQEALNKYNGTKNFHNYTVQKSFFDPSAKRHIKSFVVNPKPIIINDTEWLSL 441
Query: 387 SISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
+ G+SFM+HQIRKMVG A + R P + + S ++ ++ +P AP L L F
Sbjct: 442 KVHGQSFMMHQIRKMVGLASLIVRCGTPMERINESY-QNQKMAIPKAPGLGLLLERPVF 499
>gi|349581609|dbj|GAA26766.1| K7_Pus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|6325044|ref|NP_015112.1| pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|3122655|sp|Q12211.1|PUS1_YEAST RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|1370440|emb|CAA97927.1| PUS1 [Saccharomyces cerevisiae]
gi|1403091|emb|CAA56698.1| pseudouridine synthase 1 [Saccharomyces cerevisiae]
gi|151942589|gb|EDN60935.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407751|gb|EDV11016.1| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|259149945|emb|CAY86748.1| Pus1p [Saccharomyces cerevisiae EC1118]
gi|285815332|tpg|DAA11224.1| TPA: pseudouridine synthase PUS1 [Saccharomyces cerevisiae S288c]
gi|392296223|gb|EIW07326.1| Pus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|336470149|gb|EGO58311.1| hypothetical protein NEUTE1DRAFT_64057 [Neurospora tetrasperma FGSC
2508]
gi|350290158|gb|EGZ71372.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 629
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG+L A KAG I ++N + +K + R
Sbjct: 120 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ A ++ LK+ + + D+ ++N+HLP IKV+ I F
Sbjct: 177 ARTDKGVHAAANVLSLKLIVEDE---------DIVDKINSHLPDQIKVWGIQRVTNGFSC 227
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 228 YQACDSRWYEYLMPS 242
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV + R P ++ S RI +P AP L L
Sbjct: 463 WLSLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPR-RISIPKAPGLGLMLER 521
Query: 443 NSFSVRTR 450
F V +
Sbjct: 522 PVFDVSNK 529
>gi|365762707|gb|EHN04240.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|323335274|gb|EGA76563.1| Pus1p [Saccharomyces cerevisiae Vin13]
Length = 545
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 75 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 131
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 132 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 182
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 183 RKMCSSRWYEYLLP 196
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 347 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 405
Query: 443 NSF 445
F
Sbjct: 406 PVF 408
>gi|170086730|ref|XP_001874588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164649788|gb|EDR14029.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 525
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 108/237 (45%), Gaps = 44/237 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ AL VG+ G+ Y G+QM TIEG L AL K G + + N + K+A AR+
Sbjct: 97 KRQCALLVGFCGSGYSGMQMY---GHTRTIEGALFGALVKVGAVSQDNADDPVKVALARA 153
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD GVH+ ++ LKM I K DL R+N LP I+++ + +Q SF+
Sbjct: 154 ARTDAGVHAAGNLVSLKMIITVPGIK------DLVARINEELPPEIRLWGYVRTQNSFNA 207
Query: 197 RRECNLRKYSYLLPAEVI-------GINSQLT----------AAEIDS------------ 227
R C+ RKY+Y P ++ G++ L A DS
Sbjct: 208 RLVCDSRKYTYFFPTYLMIPPKPGTGLHRVLQLPSQPHSFWEGAISDSFQDDLRRKRCWR 267
Query: 228 ----HISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
+ + +EG H FHN+T +++ + + R K+ + S V+ E
Sbjct: 268 TGQEQVQKLRELAKGYEGTHNFHNFTVGREFKERSNH--RFMKQIEVSDPVVYGDTE 322
>gi|323346109|gb|EGA80399.1| Pus1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323351939|gb|EGA84478.1| Pus1p [Saccharomyces cerevisiae VL3]
Length = 508
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 38 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 94
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 95 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 145
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 146 RKMCSSRWYEYLLP 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 310 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 368
Query: 443 NSF 445
F
Sbjct: 369 PVF 371
>gi|207340711|gb|EDZ68976.1| YPL212Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|340959145|gb|EGS20326.1| hypothetical protein CTHT_0021520 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 658
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG+L A KAG I + N + +K + R
Sbjct: 127 KRKVAVLIGYAGTGYHGIQIN---HKERTIEGDLFAAFVKAGAISKVNADDPKKSSLVRC 183
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP D+ +++N+HLP I+V+ I + F
Sbjct: 184 ARTDKGVHAAGNVLSLKLIV------EDP---DIVEKINSHLPDQIRVWGIQRTSNGFSC 234
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 235 YQACDSRWYEYLMPS 249
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV V R P DI+ S RI +P AP L L
Sbjct: 495 WLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDIINQSYGPR-RISIPKAPGLGLMLER 553
Query: 443 NSFSVRTRPGVT 454
F+ + VT
Sbjct: 554 PMFTEYNKKAVT 565
>gi|256272816|gb|EEU07786.1| Pus1p [Saccharomyces cerevisiae JAY291]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|323302662|gb|EGA56468.1| Pus1p [Saccharomyces cerevisiae FostersB]
Length = 544
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>gi|167383737|ref|XP_001736651.1| tRNA pseudouridine synthase A [Entamoeba dispar SAW760]
gi|165900832|gb|EDR27064.1| tRNA pseudouridine synthase A, putative [Entamoeba dispar SAW760]
Length = 403
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 26/184 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+ YVG Y GL + + TIEGE+E A++KA I E N +L+K+ W+R +RT
Sbjct: 45 VAVIFSYVGRGYFGLMYLNN--NPKTIEGEIENAMYKAKCISEDNKHDLKKVGWSRCART 102
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGID--LAKRVNAHLPRNIKVFSILPSQRSFDPR 197
DKGV + +I LKM G+D +R+N+ LP I++ ++ SF+ +
Sbjct: 103 DKGVSAANNLISLKM------------GLDGNYIERINSFLPETIRIQDVVKVSHSFNAK 150
Query: 198 RECNLRKYSYLLPAEVIG--------INSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y+ P+ I IN + + D + FN++++ + H F NYT
Sbjct: 151 TRVDSRTYEYIFPSYAIQKIDSEHPEINVEYNPQQED--VDYFNSVISNYVKTHNFQNYT 208
Query: 250 ERSK 253
+K
Sbjct: 209 FNTK 212
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 9/166 (5%)
Query: 349 WLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV 408
+ + T E S S+ R I S S ++++ G + +SI G+SFML QIR+M+G A+ +
Sbjct: 207 YTFNTKETKADSKSNNRYIISMSAQLVQRN-GLNVIAVSIHGQSFMLWQIRRMIGFAIVL 265
Query: 409 KRKLLP----RDILTLSLAKHS-RIVLPLAPSEVLFLRANSFSVRTR--PGVTRPEMQTM 461
LP +I+ S + R V+P AP+ LFL F T +T
Sbjct: 266 TNFRLPIEQMNEIMKTSFTLINWRSVIPTAPAHGLFLDQCHFGNHNERLQRDTSNTSKTN 325
Query: 462 VESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSI 507
+ SEE LK EF ++ F + + P+ ++++ + I
Sbjct: 326 INSEETLKKCIEFKEKYIWTDIINF-EKEEQPFAKYMKEQVNYNKI 370
>gi|217074404|gb|ACJ85562.1| unknown [Medicago truncatula]
gi|388491044|gb|AFK33588.1| unknown [Medicago truncatula]
Length = 530
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 31 ISAVNLLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTD 90
IS+ LP + PA+ K S + S T S ++ +++KVA+ Y G
Sbjct: 10 ISSSPALPSAVAEEPATKKVKMSTTTSDDEGCTTAEGSKVRY---KRRKVAIFFAYCGVG 66
Query: 91 YRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI 150
Y+G+Q TIEGELE AL+ +G + E + G ++ WARS+RTDKGV ++ ++
Sbjct: 67 YQGMQKN---PGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVV 123
Query: 151 CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ I P + D R+N++LP I++F SF ++ C+ R+Y YL+P
Sbjct: 124 SGRFYIDPPGFVD---------RLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 211 A 211
Sbjct: 175 V 175
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ I G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+
Sbjct: 375 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 434
Query: 440 LRANSFS 446
L F+
Sbjct: 435 LDECFFT 441
>gi|357480141|ref|XP_003610356.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511411|gb|AES92553.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 530
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 31 ISAVNLLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTD 90
IS+ LP + PA+ K S + S T S ++ +++KVA+ Y G
Sbjct: 10 ISSSPALPSAVAEEPATKKVKMSTTTSDDEGCTTAEGSKVRY---KRRKVAIFFAYCGVG 66
Query: 91 YRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI 150
Y+G+Q TIEGELE AL+ +G + E + G ++ WARS+RTDKGV ++ ++
Sbjct: 67 YQGMQKN---PGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVV 123
Query: 151 CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ I P + D R+N++LP I++F SF ++ C+ R+Y YL+P
Sbjct: 124 SGRFYIDPPGFVD---------RLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 211 A 211
Sbjct: 175 V 175
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ I G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+
Sbjct: 375 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 434
Query: 440 LRANSFS 446
L F+
Sbjct: 435 LDECFFT 441
>gi|410976436|ref|XP_003994626.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Felis
catus]
Length = 673
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L +GY G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 58 KRKIVLLMGYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 117
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N HLP +I++ + F+
Sbjct: 118 ARTDKGVSAAGQVVSLKV------WLID----DILEKINGHLPPHIRILGLKRVTGGFNS 167
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD----FNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP E +D NA+L ++G H FHN+T +
Sbjct: 168 KNKCDARTYLYMLPTFAFAHKDHDVQDESYRLSADTLRRVNALLACYKGTHNFHNFTSQK 227
Query: 253 KYR 255
R
Sbjct: 228 GPR 230
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T + AS R I C + G + I + G+SFM HQIRKMVG VAV +
Sbjct: 224 TSQKGPREASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVIKGY 283
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P +L S + +++ +P AP L L F
Sbjct: 284 APESLLERSWGE-AKVDVPKAPGLGLVLERVHF 315
>gi|85091723|ref|XP_959041.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
gi|28920438|gb|EAA29805.1| hypothetical protein NCU07528 [Neurospora crassa OR74A]
Length = 625
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG+L A KAG I ++N + +K + R
Sbjct: 120 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDLFAAFVKAGAISKANADDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ A ++ LK+ + + D+ ++N+HLP IKV+ I F
Sbjct: 177 ARTDKGVHAAANVLSLKLIVEDE---------DIVDKINSHLPDQIKVWGIQRVTNGFSC 227
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 228 YQACDSRWYEYLMPS 242
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV + R P ++ S RI +P AP L L
Sbjct: 459 WLSLKVHGQSFMMHQIRKMVAMAVLIVRCGAPMSLVNESYGPR-RISIPKAPGLGLMLER 517
Query: 443 NSFSVRTR 450
F V +
Sbjct: 518 PVFDVSNK 525
>gi|58262434|ref|XP_568627.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230801|gb|AAW47110.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 560
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 72 WEP---------VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
WEP + K++ A+ +GY GT Y+G+Q+Q +H+ TIEGE+ AL KAG +
Sbjct: 108 WEPSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQ--DHTDRTIEGEVFAALVKAGAVSA 165
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI-DLAKRVNAHLPRN 181
N + +K+ AR++RTD GVH+ +I +KM P P G D+A+ VN LP
Sbjct: 166 DNAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPL----PEGFKDVAEYVNTFLPDQ 221
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
I+++ + + +SF+ R + R Y YLLP+
Sbjct: 222 IRMWGWVRTVKSFNARTAADSRIYEYLLPS 251
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIRKM+ A+ R P +L + +I +P AP L L A
Sbjct: 371 WISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGP-KKIHIPKAPPLGLLLEA 429
Query: 443 NSFSV 447
F V
Sbjct: 430 PQFGV 434
>gi|357480149|ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|388510220|gb|AFK43176.1| unknown [Medicago truncatula]
Length = 530
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 15/181 (8%)
Query: 31 ISAVNLLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTD 90
IS+ LP + PA+ K S + S T S ++ +++KVA+ Y G
Sbjct: 10 ISSSPALPSAVAEEPATKKVKMSTTTSDDEGCTTAEGSKVRY---KRRKVAIFFAYCGVG 66
Query: 91 YRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI 150
Y+G+Q TIEGELE AL+ +G + E + G ++ WARS+RTDKGV ++ ++
Sbjct: 67 YQGMQKN---PGAKTIEGELEEALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVV 123
Query: 151 CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ I P + D R+N++LP I++F SF ++ C+ R+Y YL+P
Sbjct: 124 SGRFYIDPPGFVD---------RLNSNLPSQIRIFGFKRVTASFSAKKFCDRRRYVYLIP 174
Query: 211 A 211
Sbjct: 175 V 175
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ I G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+
Sbjct: 375 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 434
Query: 440 LRANSFS 446
L F+
Sbjct: 435 LDECFFT 441
>gi|164661239|ref|XP_001731742.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
gi|159105643|gb|EDP44528.1| hypothetical protein MGL_1010 [Malassezia globosa CBS 7966]
Length = 226
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 63 PTPNSSDDKWEP-VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIR 121
PT +++D+ ++K+KVAL GY GTDY GLQ+ + TIEG++ A +AG +
Sbjct: 61 PTADTNDEGASTRLQKRKVALFFGYCGTDYSGLQVN---PGVKTIEGDIFEAFCRAGAVS 117
Query: 122 ESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN 181
+ N N K+ R++RTD+GVH+ ++ LK+ + P P L VN+ LP
Sbjct: 118 KENAVNPNKVQLQRAARTDRGVHAAGNLLTLKLILDPPNL---PPNQTLTTYVNSLLPDQ 174
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
I+++ + Q +F+ R C+ R Y YLLP V
Sbjct: 175 IRIWGMRRVQSAFNARTSCDSRLYEYLLPTYVF 207
>gi|134118796|ref|XP_771901.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254505|gb|EAL17254.1| hypothetical protein CNBN0810 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 560
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 16/150 (10%)
Query: 72 WEP---------VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
WEP + K++ A+ +GY GT Y+G+Q+Q +H+ TIEGE+ AL KAG +
Sbjct: 108 WEPSEKTNGEKRLPKRRCAVLIGYCGTGYQGMQIQ--DHTDRTIEGEVFAALVKAGAVSA 165
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI-DLAKRVNAHLPRN 181
N + +K+ AR++RTD GVH+ +I +KM P P G D+A+ VN LP
Sbjct: 166 DNAIDARKVDIARAARTDAGVHAAGNVISIKMITEPPL----PEGFKDVAEYVNTFLPDQ 221
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
I+++ + + +SF+ R + R Y YLLP+
Sbjct: 222 IRMWGWVRTVKSFNARTAADSRIYEYLLPS 251
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIRKM+ A+ R P +L + +I +P AP L L A
Sbjct: 371 WISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGP-KKIHIPKAPPLGLLLEA 429
Query: 443 NSFSV 447
F V
Sbjct: 430 PQFGV 434
>gi|400599046|gb|EJP66750.1| tRNA pseudouridine synthase A [Beauveria bassiana ARSEF 2860]
Length = 598
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A KAG I ++N + +K + AR
Sbjct: 96 KRKVAVMIGYSGTGYKGMQVNGDE---PTIERDLFQAFIKAGAISKANADDPRKSSLARC 152
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NA LP I+++ I + SF+
Sbjct: 153 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINAALPEQIRIWGIQRTNNSFNC 203
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YLLP+
Sbjct: 204 YQYCDSRFYEYLLPS 218
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMVG + R P + + S H ++ +P AP L L
Sbjct: 434 WLSLKVHGQSFMMHQIRKMVGLVSLMVRCGTPLERMDESYQNH-KMAIPKAPGLGLLLEH 492
Query: 443 NSFS 446
F+
Sbjct: 493 PVFT 496
>gi|327353057|gb|EGE81914.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 610
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 177/424 (41%), Gaps = 86/424 (20%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSPTE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I D+ D+ +++N L I+V+ I + +SF
Sbjct: 177 ARTDKGVHAAGNVVSLKL-IVEDS--------DIVQKINEQLSPQIRVWGIEITNKSFSS 227
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS---- 252
C+ R Y YL+P T+ + + + N+ EG Y +R
Sbjct: 228 YHLCDSRIYEYLIPTHCFLPPHPSTS--LGQKLVEIAEQENDLEG------YKQRQAEVA 279
Query: 253 --------KY-----RRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEE 299
KY R P T KRA K + G +S GE+
Sbjct: 280 TYWKEVDEKYIQPILERLPEVTRNRVKRALIVKS------------DTGPVDSSDSQGEQ 327
Query: 300 DLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWL-------YE 352
L E DD + + + +D + A + ++ +IRA +L
Sbjct: 328 KLNPSNE--GDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 385
Query: 353 TDEADKLSAS-------------HFRKIF-SCSCGKLEKSL----------GFGYVEISI 388
+ D+++ + +K F S +L KS G ++ + +
Sbjct: 386 KERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLKV 445
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSF 445
G+SFM+HQIRKMV V R + + H +I +P AP L L +S+
Sbjct: 446 HGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDH-KIAIPKAPGLGLLLERPIFDSY 504
Query: 446 SVRT 449
+ RT
Sbjct: 505 NKRT 508
>gi|239606367|gb|EEQ83354.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis ER-3]
Length = 596
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/424 (25%), Positives = 177/424 (41%), Gaps = 86/424 (20%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSPTE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I D+ D+ +++N L I+V+ I + +SF
Sbjct: 177 ARTDKGVHAAGNVVSLKL-IVEDS--------DIVQKINEQLSPQIRVWGIEITNKSFSS 227
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS---- 252
C+ R Y YL+P T+ + + + N+ EG Y +R
Sbjct: 228 YHLCDSRIYEYLIPTHCFLPPHPSTS--LGQKLVEIAEQENDLEG------YKQRQAEVA 279
Query: 253 --------KY-----RRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEE 299
KY R P T KRA K + G +S GE+
Sbjct: 280 TYWKEVDEKYIQPILERLPEVTRNRVKRALIVKS------------DTGPVDSSDSQGEQ 327
Query: 300 DLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWL-------YE 352
L E DD + + + +D + A + ++ +IRA +L
Sbjct: 328 KLNPSNE--GDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 385
Query: 353 TDEADKLSAS-------------HFRKIF-SCSCGKLEKSL----------GFGYVEISI 388
+ D+++ + +K F S +L KS G ++ + +
Sbjct: 386 KERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLKV 445
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSF 445
G+SFM+HQIRKMV V R + + H +I +P AP L L +S+
Sbjct: 446 HGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDH-KIAIPKAPGLGLLLERPIFDSY 504
Query: 446 SVRT 449
+ RT
Sbjct: 505 NKRT 508
>gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio]
gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio]
Length = 376
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVAL + Y G Y G+Q TIE EL TAL A I E + ++K+++ RS
Sbjct: 39 KKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRS 98
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV ++ ++ LK+ W + ++ +++NAHLP I+V F+
Sbjct: 99 ARTDKGVSAVGRVVSLKV------WMIE----NILEKINAHLPPRIRVLGCKRVTGGFNS 148
Query: 197 RRECNLRKYSYLLPAEVIG---INSQLTAAEIDSH-ISDFNAILNEFEGEHPFHNYTERS 252
+ C R YSY+LP N + T+ + S + N + ++G H FHN+T +
Sbjct: 149 KNNCYARTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFCLYKGTHNFHNFTSQK 208
Query: 253 KYR 255
+R
Sbjct: 209 GHR 211
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 362 SHFRKIFSCSCGK--LEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
S R I SCG+ + K + F I++ G+SFM+HQIRKM+G +AV + + ++
Sbjct: 214 SAMRYITHMSCGEPFIRKDVEFAV--ITVRGQSFMMHQIRKMIGLVIAVVKGYVDEGVME 271
Query: 420 LSLAKHSRIVLPLAPSEVLFLRANSF 445
S + ++ + AP L L F
Sbjct: 272 KSWGE-EKVGVSKAPGLGLVLERVHF 296
>gi|388856578|emb|CCF49884.1| related to PUS1-pseudouridine synthase 1 [Ustilago hordei]
Length = 615
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL 128
D+ E + K+KVA++ GY G Y GLQ+ + TIEG++ A G + N N
Sbjct: 102 DEPSERLPKRKVAVKFGYCGIGYSGLQIN---PGVKTIEGDMFAAFCNVGAVSADNAVNP 158
Query: 129 QKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSIL 188
K+ R++RTD+GVH+ ++ LK+ + P K G L +VN+ LP I+++ I
Sbjct: 159 NKVGLQRAARTDRGVHAAGNLVSLKLILEPCGLKP---GETLVDKVNSILPDFIRIWGIT 215
Query: 189 PSQRSFDPRRECNLRKYSYLLPAEVI 214
Q +F+ R+ C+ R Y YLLP V
Sbjct: 216 RVQNAFNARQSCDSRMYEYLLPTYVF 241
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
S F K S S KL + + ++ I G+SFMLHQIRKM+G V + R + ++
Sbjct: 341 SCQRFMKELSISDPKLIQDVE--WLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAQGLVE 398
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+R+ +P AP L L
Sbjct: 399 ECFGP-ARVHIPKAPGLGLLL 418
>gi|410930966|ref|XP_003978868.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Takifugu rubripes]
Length = 390
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 18/189 (9%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
S++D+ P KKKVAL + Y G Y G+Q TIE +L AL K+G I +++
Sbjct: 35 SNEDRRYP--KKKVALLMAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVKSGCIPQNHGD 92
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+++K+++ R +RTDKGV + ++ LK+ + DL +++N HLP I++
Sbjct: 93 DMKKMSFQRCARTDKGVSAAGQVVSLKLLLID----------DLTEKINEHLPPQIRILG 142
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFE 240
+ + F+ + C+ R Y+Y+LP A S + N + ++
Sbjct: 143 VKRVTQGFNSKNNCDARTYAYMLPTVAFSPKDFDAAGTAPSFRLQPETLQRVNHLFAHYK 202
Query: 241 GEHPFHNYT 249
G H FHN+T
Sbjct: 203 GTHNFHNFT 211
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+ I++ G+SFMLHQIRKM+G +AV + +++ S ++ +P AP L L
Sbjct: 241 FAVITVRGQSFMLHQIRKMIGLVIAVIKGYAGEEVMERSWGLQ-KVDVPKAPGLGLVLEK 299
Query: 443 NSF 445
F
Sbjct: 300 VHF 302
>gi|449476909|ref|XP_002194956.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Taeniopygia guttata]
Length = 401
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 101/187 (54%), Gaps = 16/187 (8%)
Query: 68 SDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN 127
++D+ + + K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +
Sbjct: 45 AEDQNKKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGED 104
Query: 128 LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
++K+++ R +RTDKGV + ++ LK+ + D+ +++N HLP +I++ +
Sbjct: 105 MKKMSFQRCARTDKGVSAAGQIVSLKVRLID----------DILEKINNHLPSHIRILGL 154
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIG-----INSQLTAAEIDSHISDFNAILNEFEGE 242
F+ + +C+ R YSY+LP + +L + D+ + N +L ++G
Sbjct: 155 KRVTGGFNSKNKCDARTYSYMLPTFAFAHKDHDVQEELFRLDRDT-LERVNRLLACYKGT 213
Query: 243 HPFHNYT 249
H FHN+T
Sbjct: 214 HNFHNFT 220
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I CG+ + I + G+SFM+HQIRKM+G +A+ + I+ S +
Sbjct: 232 RYIMEMYCGEPFVRENVEFAVIQVRGQSFMMHQIRKMIGLVIAIVKGYAAESIMERSWGE 291
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR 450
++ +P AP L L F R
Sbjct: 292 -EKVDVPKAPGLGLVLEKVHFEKYNR 316
>gi|310791388|gb|EFQ26915.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 614
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 14/150 (9%)
Query: 63 PTPNSSDDKWEPVR--KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
PTP ++++ R K+KVA+ VGY GT Y+G+Q+ +E TIEG+L A AG I
Sbjct: 107 PTPFTAEEIAAEGRRPKRKVAVMVGYSGTGYKGMQINNEE---KTIEGDLFKAFVAAGAI 163
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
++N + +K + R +RTDKGVH+ +I LK+ I + D+ ++NA+LP
Sbjct: 164 SKANADDHKKSSLVRCARTDKGVHAAGNVISLKLIIEDE---------DIVDKINANLPE 214
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
I+V+ I + SF + C+ R Y YLLP
Sbjct: 215 QIRVWGIQRTNNSFSCYQTCDSRWYEYLLP 244
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMVG A V R P + + S +RI +P AP L L
Sbjct: 450 WVSLKVHGQSFMMHQIRKMVGMASLVVRCATPLERIRQSYGP-TRIAIPKAPGLGLLLER 508
Query: 443 NSFSVRTR 450
F R
Sbjct: 509 PVFDAYNR 516
>gi|346324816|gb|EGX94413.1| tRNA pseudouridine synthase [Cordyceps militaris CM01]
Length = 585
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A KAG I ++N + +K + AR
Sbjct: 96 KRKVAVMIGYSGTGYKGMQVNGDE---PTIERDLFRAFIKAGAISKANADDPRKSSLARC 152
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I D D+ ++N LP I+++ I + SF+
Sbjct: 153 ARTDKGVHAAGNVISLKLIIEED---------DIVDKINEALPEQIRIWGIQRTNNSFNC 203
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YLLP+
Sbjct: 204 YQYCDSRFYEYLLPS 218
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMVG + R P + + S ++++ +P AP L L
Sbjct: 421 WLSLKVHGQSFMMHQIRKMVGLVSLMVRCGTPLERMDESYC-NNKMAIPKAPGLGLLLEH 479
Query: 443 ---NSFSVRTRPGVTRPEM 458
+++ R + RPE+
Sbjct: 480 PVFTNYNRRATDNLGRPEI 498
>gi|302844654|ref|XP_002953867.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f.
nagariensis]
gi|300260975|gb|EFJ45191.1| hypothetical protein VOLCADRAFT_94649 [Volvox carteri f.
nagariensis]
Length = 709
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VA GY G Y GLQ Q D T+E ELE AL AG ++ + G L K+ W+R+S
Sbjct: 2 QRVAFVCGYDGAGYFGLQRQPDNTGRPTVEQELERALVAAGALQARHAGALHKVNWSRTS 61
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYG--------------------IDLAKRVNAH 177
RTDKGV + A ++ L +IP A L VNA
Sbjct: 62 RTDKGVSAAANVVSL--DIPSGAAAAAAAANAAGGRGNSGGGGGGAAADLTPLVNLVNAA 119
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN 237
LP +KV++ +F+ RR R+Y YL+P V ++ LT E+ N IL
Sbjct: 120 LPSAVKVWTATRPGPNFEARRAAYGRRYEYLVP--VWALDPSLTPLELKR----LNLILE 173
Query: 238 EFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKA 270
F G H FHN+T S+ P + R RA A
Sbjct: 174 VFVGSHCFHNFT--SEPADDPRELRRTIHRAYA 204
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL--AKHSRIVLPLAPSEVLFL 440
YV I G F++HQIR+MVG A+AV R+ P D + +L A+ I +P AP L +
Sbjct: 437 YVRIVFVGCGFLMHQIRRMVGLALAVARRTAPPDCMRTALDPARPFLITVPTAPPTGLIM 496
Query: 441 RANSFS 446
F+
Sbjct: 497 DRAFFA 502
>gi|213401227|ref|XP_002171386.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999433|gb|EEB05093.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 503
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA VGY GT Y G+Q+ TIEG+L A K G + N + +K+A AR+
Sbjct: 43 KRKVACLVGYCGTGYHGMQLNPPN---KTIEGDLFEAFVKVGAVSSYNADDPKKVALARA 99
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + + +L ++VN LP I+V+ ++ + SF+P
Sbjct: 100 ARTDKGVHAAGNVITLKLILEDE---------NLIQKVNEVLPPTIRVWDVIRTINSFNP 150
Query: 197 RRECNLRKYSYLLPA 211
R C R Y YLLP+
Sbjct: 151 RTYCESRIYEYLLPS 165
>gi|358377645|gb|EHK15328.1| hypothetical protein TRIVIDRAFT_13584, partial [Trichoderma virens
Gv29-8]
Length = 505
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A KAG I ++N + +K + AR
Sbjct: 58 KRKVAVMIGYAGTGYKGMQLNGDEE---TIERDLFQAFIKAGAISKANADDPRKSSLARC 114
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I D D+ ++N LP I+V+ I + S++
Sbjct: 115 ARTDKGVHAAGNVISLKLIIEED---------DIVDKINEALPAQIRVWGIQRTNNSYNC 165
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 166 YQYCDSRWYEYLMPS 180
>gi|258574223|ref|XP_002541293.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
gi|237901559|gb|EEP75960.1| hypothetical protein UREG_00807 [Uncinocarpus reesii 1704]
Length = 578
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+QM E TIEGE+ AL AG I ++N + +K ++ R
Sbjct: 107 KRKVAVLLGYSGTGYHGMQMSTKER---TIEGEIFPALVAAGAISKANAMDPKKSSFVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP DL K+VN L I+++ I P+ + F
Sbjct: 164 ARTDKGVHAAGNVISLKLII------EDP---DLVKKVNDILSPQIRIWGIEPTNKGFSC 214
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 215 YQFCDSRIYEYLIP 228
>gi|147780612|emb|CAN69118.1| hypothetical protein VITISV_031845 [Vitis vinifera]
Length = 559
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 111/210 (52%), Gaps = 25/210 (11%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++K+A+ Y G Y+G+Q TIEG+LE ALF +G + E + G+ ++ WAR
Sbjct: 25 KRRKIAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWAR 81
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
S+RTDKGV ++ ++ + I DP G L +R+N++LP I++F SF+
Sbjct: 82 SARTDKGVSAVGQVVSGRFYI-------DPPG--LVERLNSNLPPQIRIFGFKRVTASFN 132
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
++ C+ R+Y YL+P + A + SH D ++L E+ E S+
Sbjct: 133 AKKFCDRRRYVYLIP---------VFALDPSSH-PDRESVLASVGSENELVKCLECSERG 182
Query: 256 RKPHKTGRVSKRAKASKDAVFSRVEESEGE 285
RK G + KR+ SK +V R E+ EGE
Sbjct: 183 RKV--VGIMGKRSFESKVSVDDR-EDVEGE 209
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ + G+SFMLHQIRKM+G AVA+ R + P +L +L K I +P AP L+
Sbjct: 413 GIEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLY 472
Query: 440 LRA---NSFSVRTRPGVTRPEMQTMVESEEILKM 470
L +S++ + R M+ E E KM
Sbjct: 473 LDECFFSSYNKKWRDSHEEVSMKAYAEEAEEFKM 506
>gi|365758114|gb|EHM99973.1| Pus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 552
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I N +L+K + R+
Sbjct: 82 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESTLFKAFVEAGAISRDNSNDLKKNGFMRA 138
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP+ I+V+ I ++FD
Sbjct: 139 ARTDKGVHAGGNLISLKMII------EDP---DIKEKINDKLPQGIRVWDIERVNKAFDC 189
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 190 RKMCSSRWYEYLLP 203
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I G+SFMLHQIRKM+ A + R P +T + + +I +P AP+ L L A
Sbjct: 354 WVSVKIHGQSFMLHQIRKMISMATLITRCGCPVQRITQAYGQQ-KINVPKAPALGLLLEA 412
Query: 443 NSF 445
F
Sbjct: 413 PVF 415
>gi|410083876|ref|XP_003959515.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
gi|372466107|emb|CCF60380.1| hypothetical protein KAFR_0K00250 [Kazachstania africana CBS 2517]
Length = 546
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A AG I + N +L+K + RS
Sbjct: 72 KRKVAVMVGYCGTGYHGMQYNPPN---PTIEAALFKAFVDAGAISKDNSNDLKKNGFMRS 128
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP ++ +++N LP I+V+ I ++FD
Sbjct: 129 ARTDKGVHAGGNLISLKMII------EDP---EIKQKINEKLPEGIRVWDINRVNKAFDC 179
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 180 RKMCSSRWYEYLLP 193
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A + R P + +T S +I +P AP+ L L +
Sbjct: 344 WVSIKIHGQSFMLHQIRKMISMATLITRCGTPVERITQSFGPQ-KINIPKAPALGLLLES 402
Query: 443 NSF 445
F
Sbjct: 403 PVF 405
>gi|401837445|gb|EJT41373.1| PUS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 552
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I N +L+K + R+
Sbjct: 82 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESTLFKAFVEAGAISRDNSNDLKKNGFMRA 138
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP+ I+V+ I ++FD
Sbjct: 139 ARTDKGVHAGGNLISLKMII------EDP---DIKEKINDKLPQGIRVWDIERVNKAFDC 189
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 190 RKMCSSRWYEYLLP 203
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I G+SFMLHQIRKM+ A + R P +T + + +I +P AP+ L L A
Sbjct: 354 WVSVKIHGQSFMLHQIRKMISMATLITRCGCPVQRITQAYGQQ-KINVPKAPALGLLLEA 412
Query: 443 NSF 445
F
Sbjct: 413 PVF 415
>gi|385304790|gb|EIF48795.1| trna pseudouridine synthase [Dekkera bruxellensis AWRI1499]
Length = 379
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 14/146 (9%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P ++K +P KKKVA +GY G Y G+Q+ TIEG+L A+ +AG I ++N
Sbjct: 22 PMFPNEKRKP--KKKVACLIGYCGAGYHGMQINPPN---KTIEGDLFKAMVEAGAISKNN 76
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+L+K + R++RTDKGVH+ +I LKM + + D+ +++N LP I+V
Sbjct: 77 SNDLKKSGFMRAARTDKGVHAAGNVISLKMIVEDE---------DVVEKINQALPEQIRV 127
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ +SFD R+ C+ R Y YL+P
Sbjct: 128 WGYQRVNKSFDCRKMCSSRIYEYLMP 153
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V I I G+SFMLHQIRKM+G A + R P D + S + ++ +P AP+ L L
Sbjct: 300 WVSIKIHGQSFMLHQIRKMIGLASLIVRTGCPIDKIRESF-RMPKVNIPKAPALGLLL 356
>gi|322705939|gb|EFY97522.1| tRNA pseudouridine synthase [Metarhizium anisopliae ARSEF 23]
Length = 612
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A A I ++N + +K + AR
Sbjct: 114 KRKVAVMIGYSGTGYKGMQVNGDE---PTIERDLFRAFIDAKAISKANADDPRKSSLARC 170
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ +++NAHLP I+++ I + SF+
Sbjct: 171 ARTDKGVHAAGNVISLKLIIEDE---------DIVEKINAHLPEQIRIWGIQRTNNSFNC 221
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YLLP+
Sbjct: 222 YQYCDSRFYEYLLPS 236
>gi|354479118|ref|XP_003501760.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Cricetulus griseus]
Length = 393
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++K+++ R
Sbjct: 49 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 108
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ ++N+HLP NI++ + F+
Sbjct: 109 ARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSNIRILGLKRVTGGFNS 158
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP + E + N +L ++G H FHN+T +
Sbjct: 159 KNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSPETLEQVNRLLACYKGTHNFHNFTSQK 218
Query: 253 KYR 255
R
Sbjct: 219 GPR 221
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 227 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 286
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 287 -EKVDVPKAPGLGLVLERVHF 306
>gi|354479116|ref|XP_003501759.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Cricetulus griseus]
gi|344246326|gb|EGW02430.1| tRNA pseudouridine synthase A [Cricetulus griseus]
Length = 423
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++K+++ R
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 138
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ ++N+HLP NI++ + F+
Sbjct: 139 ARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSNIRILGLKRVTGGFNS 188
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP + E + N +L ++G H FHN+T +
Sbjct: 189 KNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSPETLEQVNRLLACYKGTHNFHNFTSQK 248
Query: 253 KYR 255
R
Sbjct: 249 GPR 251
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>gi|347841293|emb|CCD55865.1| similar to tRNA pseudouridine synthase [Botryotinia fuckeliana]
Length = 631
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 18/174 (10%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVR------KKKVALRVGYVGTDYRGLQM 96
R +SK +V + + PT S++ E + K KVA+ +GY GT Y+GLQ+
Sbjct: 57 RNDDDQASKRRKTVHNGESEPTAFSTEFSKEEIESEVRKPKHKVAVMIGYAGTGYKGLQI 116
Query: 97 QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156
E TIEG++ A AG I ++N + +K A R +RTDKGVH+ ++ LK+ I
Sbjct: 117 NTKE---KTIEGDMFKAFVAAGAISKANANDPKKSALIRCARTDKGVHAAGNVLSLKLII 173
Query: 157 PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+DP + + +N+HLP I+V+ I + SF+ + C+ R Y YL+P
Sbjct: 174 ------EDP---KVVENINSHLPDQIRVWGIERTTGSFNCYQMCDSRWYEYLIP 218
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV A V R P +++ + ++I +P APS L L A
Sbjct: 473 WLSLKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEA 531
Query: 443 NSF 445
F
Sbjct: 532 PVF 534
>gi|154300700|ref|XP_001550765.1| hypothetical protein BC1G_10938 [Botryotinia fuckeliana B05.10]
Length = 631
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 18/174 (10%)
Query: 43 RCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVR------KKKVALRVGYVGTDYRGLQM 96
R +SK +V + + PT S++ E + K KVA+ +GY GT Y+GLQ+
Sbjct: 57 RNDDDQASKRRKTVHNGESEPTAFSTEFSKEEIESEVRKPKHKVAVMIGYAGTGYKGLQI 116
Query: 97 QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156
E TIEG++ A AG I ++N + +K A R +RTDKGVH+ ++ LK+ I
Sbjct: 117 NTKE---KTIEGDMFKAFVAAGAISKANANDPKKSALIRCARTDKGVHAAGNVLSLKLII 173
Query: 157 PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+DP + + +N+HLP I+V+ I + SF+ + C+ R Y YL+P
Sbjct: 174 ------EDP---KVVENINSHLPDQIRVWGIERTTGSFNCYQMCDSRWYEYLIP 218
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV A V R P +++ + ++I +P APS L L A
Sbjct: 473 WLSLKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEA 531
Query: 443 NSF 445
F
Sbjct: 532 PVF 534
>gi|363749077|ref|XP_003644756.1| hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888389|gb|AET37939.1| Hypothetical protein Ecym_2190 [Eremothecium cymbalariae
DBVPG#7215]
Length = 571
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 86/150 (57%), Gaps = 14/150 (9%)
Query: 63 PTPNSSDDKWEPVR--KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
PT +DD + +R KKKVA+ VGY GT Y G+Q TIE L A KAG I
Sbjct: 93 PTVALADDGSKEIRLPKKKVAVMVGYCGTGYHGMQYNPPN---PTIEAALFDAFVKAGAI 149
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
++N +L+K + R++RTDKGVH+ +I LK+ I + + +++N LP
Sbjct: 150 SKANSTDLKKNGFMRAARTDKGVHAGGNVISLKLIIEDSS---------IREKINDILPP 200
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+I+V+SI ++FD R+ C+ R Y YLLP
Sbjct: 201 SIRVWSINRVNKAFDSRKLCSSRWYEYLLP 230
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V I I G+SFMLHQIRKM+ A + R P ++ + +I +P AP+ L L
Sbjct: 381 WVSIKIHGQSFMLHQIRKMISMATLITRCGCPISRISQAYGPQ-KINIPKAPALGLLL 437
>gi|71022667|ref|XP_761563.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
gi|46101432|gb|EAK86665.1| hypothetical protein UM05416.1 [Ustilago maydis 521]
Length = 615
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA++ GY G Y GLQ+ + TIEG++ A AG + N N K+ R+
Sbjct: 120 KRKVAVKFGYCGIGYSGLQINP---GVKTIEGDIFDAFCTAGAVSSDNAVNPNKVGLQRA 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ ++ LK+ + P K G L +VN LP I+++ + Q F+
Sbjct: 177 ARTDRGVHAAGNLLSLKLILQPQGLKP---GETLVDKVNELLPPFIRIWGVTRVQNGFNA 233
Query: 197 RRECNLRKYSYLLPAEVI 214
R+ C+ R Y YLLP V
Sbjct: 234 RQSCDSRMYEYLLPTYVF 251
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 371 SCGKLEKSL---------GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
SC + K L G ++ I G+SFMLHQIRKM+G V + R ++
Sbjct: 351 SCQRFMKKLTISEPKMIQGVEWLSIKFHGQSFMLHQIRKMIGLLVLIGRTGAAERLVDEC 410
Query: 422 LAKHSRIVLPLAPSEVLFLRA---NSFSVRTR 450
+R+ +P AP L L ++++ R R
Sbjct: 411 FGP-ARVHIPKAPGLGLLLEMPIFDAYNTRIR 441
>gi|255727174|ref|XP_002548513.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
gi|240134437|gb|EER33992.1| tRNA pseudouridine synthase 1 [Candida tropicalis MYA-3404]
Length = 427
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 10/128 (7%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GT Y G+Q+Q D + + TIE ++ A+ KAG I + N +L+K + R++RTDKGV
Sbjct: 2 LGYCGTGYNGMQVQNDPN-VKTIEKDVYEAMVKAGAISKENSTDLKKSQFQRAARTDKGV 60
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ +I LKM I +DP ++ ++N +LP I+++ I + + FD R+ C+ R
Sbjct: 61 HAAGNVISLKMII------EDP---EILNKINDNLPEQIRLWGIQRTTKGFDCRKCCSSR 111
Query: 204 KYSYLLPA 211
Y YLLP
Sbjct: 112 IYEYLLPT 119
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I I G+SFMLHQIRKM+ A V R LP I+ + K +I +P AP+ L
Sbjct: 272 GTEWVSIKIHGQSFMLHQIRKMIAMATMVVRLSLPSKIIN-NFFKEDKINIPKAPALGLL 330
Query: 440 L 440
L
Sbjct: 331 L 331
>gi|340518448|gb|EGR48689.1| Hypothetical protein TRIREDRAFT_27492 [Trichoderma reesei QM6a]
Length = 507
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A KAG I ++N + +K + AR
Sbjct: 58 KRKVAVMIGYAGTGYKGMQLNGDE---ETIERDLFQAFIKAGAISKANADDPRKSSLARC 114
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++N LP I+V+ I + SF+
Sbjct: 115 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINEALPAQIRVWGIQRTNNSFNC 165
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 166 YQYCDSRWYEYLMPS 180
>gi|365987776|ref|XP_003670719.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
gi|343769490|emb|CCD25476.1| hypothetical protein NDAI_0F01570 [Naumovozyma dairenensis CBS 421]
Length = 548
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q TIE L A AG I ++N +L+K + RS
Sbjct: 79 KRKVAVMIGYCGTGYHGMQYNPPN---PTIEATLFKAFVDAGAISKANSNDLKKNGFMRS 135
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP ++ ++N LP ++V+ I ++FD
Sbjct: 136 ARTDKGVHAGGNLISLKMII------EDP---EIKSKINEQLPEGVRVWDIERVNKAFDC 186
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 187 RKMCSSRWYEYLLP 200
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A V R P D + + ++ +P AP+ L L A
Sbjct: 351 WVSIKIHGQSFMLHQIRKMISMATLVTRCGSPVDRINQAYGVQ-KLNIPKAPALGLLLEA 409
Query: 443 NSF 445
F
Sbjct: 410 PVF 412
>gi|322695818|gb|EFY87620.1| tRNA pseudouridine synthase [Metarhizium acridum CQMa 102]
Length = 592
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A A I ++N + +K + AR
Sbjct: 114 KRKVAVMIGYSGTGYKGMQVNGDE---PTIERDLFRAFIDAKAISKANADDPRKSSLARC 170
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NAHLP I+++ I + SF+
Sbjct: 171 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINAHLPEQIRIWGIQRTNNSFNC 221
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YLLP+
Sbjct: 222 YQYCDSRFYEYLLPS 236
>gi|321265516|ref|XP_003197474.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317463954|gb|ADV25687.1| Pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 560
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 100/180 (55%), Gaps = 13/180 (7%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P D + + K++ A+ +GY GT Y+G+Q+Q +H+ TIEGE+ AL KAG + N
Sbjct: 110 PREKTDGEKRLPKRRCAVLIGYCGTGYQGMQIQ--DHTDRTIEGEIFAALVKAGAVSADN 167
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKM--EIP-PDAWKDDPYGIDLAKRVNAHLPRN 181
+ +K+ AR++RTD GVH+ +I +KM E P P+ +K ++A+ VN LP
Sbjct: 168 AVDARKVDIARAARTDAGVHAAGNVISIKMITEPPLPEGFK------NVAEYVNTFLPDQ 221
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI--GINSQLTAAEIDSHISDFNAILNEF 239
I+++ + + +SF+ R + R Y YLLP+ + A +D D+ I+ E+
Sbjct: 222 IRMWGWVRTVKSFNARTAADSRIYEYLLPSYCLIPPHKDDPLAKHLDISSPDWREIVGEY 281
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIRKM+ A+ R P +L + +I +P AP L L A
Sbjct: 371 WISVQIHGQSFMLHQIRKMISMAMLACRTGSPPSLLPETFGP-KKIHIPKAPPLGLLLEA 429
Query: 443 NSFSV 447
F V
Sbjct: 430 PQFGV 434
>gi|395840212|ref|XP_003792958.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Otolemur
garnettii]
Length = 430
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L V Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 86 KRKIVLLVAYAGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 145
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 146 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 195
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP + E + N +L ++G H FHN+T +
Sbjct: 196 KNKCDARTYCYMLPTFAFAHKDRDVQDETYRLSPETLQRVNRLLACYKGTHNFHNFTSQK 255
Query: 253 KYR 255
R
Sbjct: 256 GPR 258
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 264 RYILEMFCEEPFEREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 323
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 324 -EKVDVPKAPGLGLVLERVHF 343
>gi|358060585|dbj|GAA93704.1| hypothetical protein E5Q_00349 [Mixia osmundae IAM 14324]
Length = 461
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 13/163 (7%)
Query: 52 SSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELE 111
+SPS + +PN + K+KVAL VGY GT Y G Q+Q + L TIEG
Sbjct: 28 ASPSEQPVASTSSPNK-------LPKRKVALLVGYCGTGYYGSQIQSE---LRTIEGAFF 77
Query: 112 TALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
L KAG I + N + K+ AR++RTD GVH+ + LK+ + P ++
Sbjct: 78 EGLVKAGCISKDNAESASKVGLARTARTDAGVHAAGNLFSLKLILQPTTLASSD---NIV 134
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
+ +N HLP +++V++ F+PR C+ R Y+Y LP V
Sbjct: 135 EHINRHLPDHLRVWACPRVTGGFNPRSNCDSRWYNYTLPTHVF 177
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I + G+SFMLHQIRKM+G A+ R P L L SRI +P APS L L
Sbjct: 275 WISIKLHGQSFMLHQIRKMIGLAILSVRTGTP-STLVLECFGPSRIAVPKAPSLGLLLEY 333
Query: 443 NSFS 446
F+
Sbjct: 334 PEFN 337
>gi|429856152|gb|ELA31077.1| tRNA pseudouridine synthase [Colletotrichum gloeosporioides Nara
gc5]
Length = 473
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y+G+Q+ +E TIEG+L A AG I ++N + +K + R
Sbjct: 99 KRKVAVMVGYSGTGYKGMQINNEE---KTIEGDLFKAFVAAGAISKANADDHKKSSLVRC 155
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ +++NA LP I+V+ I + SF
Sbjct: 156 ARTDKGVHAAGNVISLKLIIEDE---------DVVEKINAALPEQIRVWGIQRTNNSFSC 206
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 207 YQTCDSRWYEYLMP 220
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMVG A V R P + + S +RI +P AP L L
Sbjct: 366 WVSLKVHGQSFMMHQIRKMVGMASLVVRCGTPLERVRQSYGP-TRIAIPKAPGLGLLLER 424
Query: 443 NSFSVRTR 450
F R
Sbjct: 425 PVFDAYNR 432
>gi|332029057|gb|EGI69071.1| tRNA pseudouridine synthase A [Acromyrmex echinatior]
Length = 398
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 40/205 (19%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+++K A+ +GYVG DY G MQR+ + TIE +L AL KA I + + N + I +
Sbjct: 40 IKRKNHAMLLGYVGKDYYG--MQRNP-GMKTIEEDLIIALLKADLITKEQFENTRAINFQ 96
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV ++ ++ LK+ P ++ K +N LP I+VF I + F
Sbjct: 97 RAARTDKGVSAIRQIVSLKL--PENSNK---------TVINQFLPDAIRVFGIKRVTKGF 145
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQ---LTAAEIDSH----------------------- 228
+ + +C+ R Y Y++P+ + Q E+D
Sbjct: 146 NSKNQCDARTYRYVIPSYAFALEDQSLLKLGEEVDEDERIKQLSIIDGKPYTDYRLSPES 205
Query: 229 ISDFNAILNEFEGEHPFHNYTERSK 253
+ N+IL FEG H FHN+T + K
Sbjct: 206 LDRLNSILKLFEGSHNFHNFTSKVK 230
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 386 ISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+ I G+SFMLHQIRKMV +A+ R ++ ++ + + ++ LPLAPS L L
Sbjct: 259 LEIKGQSFMLHQIRKMVAIVIAIARNMISKETIDEAFKTMDKMDLPLAPSLGLCL 313
>gi|218191324|gb|EEC73751.1| hypothetical protein OsI_08404 [Oryza sativa Indica Group]
Length = 581
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 47 KRRKVAILLGYCGAGYQGMQKN---PGARTIEGDLEEALYRAGAVPEADRAAPRRYDWAR 103
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ F + SF+
Sbjct: 104 AARTDKGVSAAAQVVSGRFYVDPPVFTD---------RLNAQLAPQIRAFGYVRVTNSFN 154
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YLLP
Sbjct: 155 AKKFCDRRRYVYLLP 169
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G ++ + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 410 RFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 469
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 470 DVNLNVPTAPEVGLYLDECMFT 491
>gi|115447813|ref|NP_001047686.1| Os02g0668400 [Oryza sativa Japonica Group]
gi|50251324|dbj|BAD28300.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|50252138|dbj|BAD28134.1| putative pseudouridine synthase 1 [Oryza sativa Japonica Group]
gi|113537217|dbj|BAF09600.1| Os02g0668400 [Oryza sativa Japonica Group]
Length = 581
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 47 KRRKVAILLGYCGAGYQGMQKN---PGARTIEGDLEEALYRAGAVPEADRAAPRRYDWAR 103
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ F + SF+
Sbjct: 104 AARTDKGVSAAAQVVSGRFYVDPPVFTD---------RLNAQLAPQIRAFGYVRVTNSFN 154
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YLLP
Sbjct: 155 AKKFCDRRRYVYLLP 169
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G ++ + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 410 RFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 469
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 470 DVNLNVPTAPEVGLYLDECMFT 491
>gi|17565126|ref|NP_507242.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
gi|3880517|emb|CAA16518.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
Length = 415
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 99/183 (54%), Gaps = 11/183 (6%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++ K A+ +GY G Y G+Q+Q+D L TIE +L A+ AG I + +
Sbjct: 30 VKQAKYAMLLGYQGKKYYGMQLQKD---LPTIESKLLEAMETAGWITTAQKEKPFDFFFQ 86
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTD+ V S A +C M++P D D Y + A +N LP +I+VF + + F
Sbjct: 87 RAARTDRAV-SAARQMC-GMQLPRD---DAKYQAEGAGILNNILPADIRVFGMRRTTNFF 141
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
P+++C+ R YSY P+ V ++LT + +++ N+IL+ + G H F NYT +
Sbjct: 142 HPQKQCDHRTYSYTCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAK 201
Query: 252 SKY 254
Y
Sbjct: 202 RAY 204
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V+I I G+SF+LHQIRKMVG + V R+L + + S + R+ +P+AP L L
Sbjct: 235 FVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRSF-EGQRMDIPMAPGLGLLLER 293
Query: 443 NSFSVRTR 450
+ R
Sbjct: 294 THYDSYDR 301
>gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Anolis carolinensis]
Length = 406
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 16/199 (8%)
Query: 57 SHTLTR--PTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL 114
H L R + + ++D + K+K+ L V Y G Y G+Q TIE +L AL
Sbjct: 38 GHALKRFKASEDEAEDGAKRFPKRKIVLLVAYSGKGYHGMQRNVGNSQFKTIEDDLVLAL 97
Query: 115 FKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV 174
++G I E++ +++K+++ R +RTDKGV + ++ LK+ W + D+ +++
Sbjct: 98 IQSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKV------WLIE----DILQKI 147
Query: 175 NAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG---INSQLTAAEIDSH-IS 230
N HLP +I++ + F+ + +C+ R YSY+LP + Q +++ ++
Sbjct: 148 NNHLPPHIRILGLKRVTGGFNSKNKCDARTYSYMLPTFAFAHKDCDFQDHTFHLNTETLA 207
Query: 231 DFNAILNEFEGEHPFHNYT 249
N +L ++G H FHN+T
Sbjct: 208 TVNRLLAGYKGTHNFHNFT 226
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + + + G+SFM+HQIRKM+G +A+ + I+ S +
Sbjct: 238 RYIMEMYCEEPFVRQGMEFAVMKVKGQSFMMHQIRKMIGLVIAIVKGYASESIMEQSWGE 297
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 298 -EKVDVPKAPGLGLVLERVHF 317
>gi|350636807|gb|EHA25165.1| hypothetical protein ASPNIDRAFT_186794 [Aspergillus niger ATCC
1015]
Length = 538
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL A AG I ++N + +K + R
Sbjct: 47 KKKVAVLLGYSGTGYKGMQLSETE---KTIEGELFAAFVAAGAISKANATDPKKSSLVRC 103
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + D D+ +++N L I+V+ IL + +SF
Sbjct: 104 ARTDKGVHAAGNIVSLKLIVEDD---------DIIQKINEKLSSQIRVWDILVTNKSFSS 154
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 155 YQLCDSRIYEYLIP 168
>gi|149063709|gb|EDM14032.1| pseudouridine synthase 1, isoform CRA_c [Rattus norvegicus]
Length = 402
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 51 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 110
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 160
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 161 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLGCYKG 216
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 217 THNFHNFTSQKGPR 230
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 236 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 295
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 296 -EKVDVPKAPGLGLVLERVHF 315
>gi|327303396|ref|XP_003236390.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326461732|gb|EGD87185.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 580
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 105/384 (27%), Positives = 173/384 (45%), Gaps = 40/384 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLSPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPAEVI--GINSQLTAAEIDSHISDFNAILNEF-EGEHPFHNYTERSK 253
+ C+ R Y YL+P+ S A ++D +++ + + F E + +Y E +
Sbjct: 206 YQFCDSRMYEYLIPSHCFLPPHPSTFLAQKMD-EMAEKHGDMEAFKERQAEVESYWEETD 264
Query: 254 YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGE--EDLGIGGEISSD- 310
K H + + K V + V GEE+ + GE E+ SD
Sbjct: 265 ---KKHIQPIIDALPEKIKPYVQAAVGSVGGEEEKATPANNESGEACEERTESDTKKSDL 321
Query: 311 --DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIF 368
DE+A N + + ++ + + + + A LY + +K F
Sbjct: 322 TPDEQAQVNVAIKDIRTAYFKAKNEYRIPPERLARINAALALYVGTK--NFHNYTIQKTF 379
Query: 369 -SCSCGKLEKSLGFGYVEISISG----------ESFMLHQIRKMVGTAVAVKRKLLPRDI 417
S +L KS + I+G +SFM+HQIRKMV + R DI
Sbjct: 380 RDPSARRLIKSFKISRDPVVINGTEWLSLKVHGQSFMMHQIRKMVAMVALLVR--CGADI 437
Query: 418 LTLSLA-KHSRIVLPLAPSEVLFL 440
+ + ++SRI +P AP L L
Sbjct: 438 KRIEESYQNSRIPIPKAPGLGLLL 461
>gi|348513719|ref|XP_003444389.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oreochromis niloticus]
Length = 421
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 17/189 (8%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
++ D+K P KKKV L + Y G Y G+Q TIE +L AL K+G I E++
Sbjct: 70 HAEDEKKYP--KKKVVLLMVYSGKGYYGMQRNPGNSQFRTIEDDLVAALIKSGCIPENHG 127
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
++K+++ R +RTDKGV + ++ LK+ + D+ +++N HLP IKV
Sbjct: 128 DEMKKMSFQRCARTDKGVSAAGQVVSLKVRLID----------DIIEKINEHLPPQIKVL 177
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIG----INSQLTAAEIDSH-ISDFNAILNEFE 240
+ + F+ + C+ R YSY+LP + A ++ + N + ++
Sbjct: 178 GLKRVTQGFNSKNNCDARTYSYMLPTVAFSPKDYDTGNIAAFRLEPETLQKVNRLFALYK 237
Query: 241 GEHPFHNYT 249
G H FHN+T
Sbjct: 238 GTHNFHNFT 246
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I SCG+ + + I++ G+SFMLHQIRKM+G +AV + +++ S +
Sbjct: 258 RYITEMSCGEPFIRRNYEFAVITVRGQSFMLHQIRKMIGLVIAVVKGYAKEEVMERSWGQ 317
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 318 -EKVDVPKAPGLGLILERVHF 337
>gi|50303379|ref|XP_451631.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74637053|sp|Q6CWQ8.1|PUS1_KLULA RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|49640763|emb|CAH02024.1| KLLA0B02244p [Kluyveromyces lactis]
Length = 553
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q TIE EL A +AG I ++N +L+K + R+
Sbjct: 98 KRKVAVMIGYCGTGYHGMQYNPPN---DTIEKELFEAFVRAGAISKANSTDLKKNGFQRA 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP ++ +++N LP I+V+ I ++FD
Sbjct: 155 ARTDKGVHAGGNVISLKLII------EDP---EVKEKINNELPDQIRVWDISRVNKAFDC 205
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 206 RKMCSSRWYEYLLP 219
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A + R P + + + + +I +P AP+ L L A
Sbjct: 369 WVSIKIHGQSFMLHQIRKMISMATLITRCFSPLERIRQAYGQE-KINIPKAPALGLLLEA 427
Query: 443 ---NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSK 485
+ ++ R + P + +SE + Y + L EV++
Sbjct: 428 PVYDGYNTRLQEFGYDPIDFSKYQSEMDTFKMKHIYDKIYLEEVNE 473
>gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus]
Length = 393
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 42 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 151
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 152 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLGCYKG 207
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 208 THNFHNFTSQKGPR 221
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 227 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 286
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 287 -EKVDVPKAPGLGLVLERVHF 306
>gi|444314537|ref|XP_004177926.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
gi|387510965|emb|CCH58407.1| hypothetical protein TBLA_0A06150 [Tetrapisispora blattae CBS 6284]
Length = 496
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 90/174 (51%), Gaps = 21/174 (12%)
Query: 46 ASSSSKSSPSVSHTLTRPTPNSS---DDKWEPVRK------KKVALRVGYVGTDYRGLQM 96
A + KS+ H +P N + D P+ K +KVA+ +GY G Y GLQ
Sbjct: 41 ACNKDKSAVDDQHVDKKPKSNRTVALDSNGNPLPKEKRLPKRKVAVMIGYCGAGYCGLQY 100
Query: 97 QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156
TIE L A +G I ++N +L+K +AR++RTDKGVH+ +I LKM I
Sbjct: 101 NPPN---PTIESTLFKAFCDSGAISKANSTDLKKNGFARTARTDKGVHAGGNLISLKMII 157
Query: 157 PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+DP D+ +++N LP I+V+ I ++FD R+ C R Y YLLP
Sbjct: 158 ------EDP---DIKQKINDALPEGIRVWDIKRVNKAFDCRKMCGSRWYEYLLP 202
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKM+ A V R P D +T + R+ +P AP+ L L A
Sbjct: 353 WISIKIHGQSFMLHQIRKMISMATLVTRCGCPADRITEAYGTQ-RLNIPKAPALGLLLEA 411
Query: 443 NSF 445
F
Sbjct: 412 PVF 414
>gi|367029149|ref|XP_003663858.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
gi|347011128|gb|AEO58613.1| hypothetical protein MYCTH_2306070 [Myceliophthora thermophila ATCC
42464]
Length = 627
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG++ A AG I ++N + +K + R
Sbjct: 108 KRKVAVMIGYAGTGYHGIQIN---HKDKTIEGDIFAAFVAAGAISKANADDPKKSSLVRC 164
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ ++NAHLP I+V+ I + F
Sbjct: 165 ARTDKGVHAAGNVLSLKLIVEDE---------DIVDKINAHLPDQIRVWGIQRTSNGFSC 215
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 216 YQACDSRWYEYLMPS 230
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV V R P I+T S RI +P AP L L
Sbjct: 464 WLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLSIITESYGPR-RISIPKAPGLGLMLER 522
Query: 443 NSFS 446
F+
Sbjct: 523 PMFT 526
>gi|431912100|gb|ELK14238.1| tRNA pseudouridine synthase A [Pteropus alecto]
Length = 409
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L V Y G Y G+Q TIE +L +AL ++G I E++ +++
Sbjct: 82 EPRRKLPKRKIVLLVAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 141
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ +
Sbjct: 142 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKR 191
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPF 245
F+ + C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 192 VTGGFNSKNRCDARTYLYMLPTFAFAHKDRDVQDETYRLSAETLRRVNRLLARYKGTHNF 251
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 252 HNFTSQKGPR 261
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R + C + + G + I ++G+SFM HQIRKMVG VA+ + P D+L S +
Sbjct: 267 RYVLDMFCEEPFERDGLEFAVIKVTGQSFMTHQIRKMVGLVVAIAKGYAPEDVLERSWGE 326
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
+++ +P AP L L F + P T+V +E + + ++ +++ + + S
Sbjct: 327 -AKVDVPKAPGLGLVLERVHFERAFKEQHIYP---TIVSTERHERSMAQWLSTLPVHDFS 382
Query: 485 KFLDATKSP 493
A SP
Sbjct: 383 ATAQAAASP 391
>gi|70906466|ref|NP_001020734.1| tRNA pseudouridine synthase A, mitochondrial [Rattus norvegicus]
gi|182676393|sp|Q4KM92.2|TRUA_RAT RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|149063708|gb|EDM14031.1| pseudouridine synthase 1, isoform CRA_b [Rattus norvegicus]
gi|171847186|gb|AAI61821.1| Pseudouridylate synthase 1 [Rattus norvegicus]
Length = 423
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNF 241
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 242 HNFTSQKGPR 251
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>gi|260944536|ref|XP_002616566.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
gi|238850215|gb|EEQ39679.1| hypothetical protein CLUG_03807 [Clavispora lusitaniae ATCC 42720]
Length = 229
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 10/127 (7%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GT Y G+Q+Q + + TIE E+ A AG + + N +L+K + R++RTDKGV
Sbjct: 2 IGYCGTGYNGMQIQNNP-DVKTIEAEIFKAFIAAGAVSQENSTDLKKNGFMRAARTDKGV 60
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ +I K+ + + D+ ++N+HLP I+++ I RSFD R+ C+ R
Sbjct: 61 HAAGNVISCKLILEDE---------DIMHKINSHLPEKIRLWGIERVNRSFDCRKLCSSR 111
Query: 204 KYSYLLP 210
Y YLLP
Sbjct: 112 VYEYLLP 118
>gi|451850213|gb|EMD63515.1| hypothetical protein COCSADRAFT_90927 [Cochliobolus sativus ND90Pr]
Length = 625
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L A AG I ++N + +K + R
Sbjct: 107 KRKVAVMIGYSGTGYKGMQI---DNKQKTIEGDLFNAFVAAGAISKANASDPKKSSLVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I D D+ +++N+HLP I+V+ I + SF
Sbjct: 164 ARTDKGVHAAGNVVSLKLIIEDD---------DILEKINSHLPDQIRVWGIQRTIGSFSC 214
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 215 YQACDSRWYEYLIP 228
>gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar]
gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar]
Length = 392
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 15/178 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L + Y G Y G+Q TIE EL TAL K+G I +++ +++K+++ R
Sbjct: 49 KRKVVLLLAYSGKGYYGMQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRC 108
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W + D+ +++N++LP I+V + F+
Sbjct: 109 ARTDKGVSAAGQVVSLKL------WMIE----DVMEKINSNLPPQIRVLGLKRVTGGFNS 158
Query: 197 RRECNLRKYSYLLPAEVIGINSQLT----AAEIDSH-ISDFNAILNEFEGEHPFHNYT 249
+ C+ R YSY+LP T A ++ + N + ++G H FHN+T
Sbjct: 159 KNSCDARTYSYMLPTVAFSPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFT 216
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I SCG+ G + EI++ G+SFM+HQIRKM+G +AV + ++L S +
Sbjct: 228 RYITEMSCGEPFVRGGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEVLKRSWGE 287
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 288 E-KVDVPKAPGLGLVLEKVHF 307
>gi|367014979|ref|XP_003681989.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
gi|359749650|emb|CCE92778.1| hypothetical protein TDEL_0E05350 [Torulaspora delbrueckii]
Length = 431
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 156/347 (44%), Gaps = 44/347 (12%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIE EL A +AG I ++N +L+K + R++RTDKGVH+ +I LK+ I +D
Sbjct: 9 TIEAELFRAFVEAGAISKANSNDLKKNGFMRAARTDKGVHAGGNLISLKLII------ED 62
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA-EVIGIN-SQLTA 222
P + +++N LP I+++ I ++FD R+ C R Y YLLP +IG +
Sbjct: 63 P---QIKEKINEKLPEGIRIWDIERVNKAFDCRKMCGSRWYEYLLPTYSLIGPKPGSILY 119
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEES 282
I+ + +L+E F + ++ H+ + + K V EE
Sbjct: 120 NNIEDSKVECPGVLDEDVESKEFW-----EAFNKEAHEI-FTDEEIDSIKSYVPPPREEF 173
Query: 283 EGEEDGFSKVEESDGEEDLGIGG-EISSDDEKANQNSMVS--GVHQEDCCNQHANGL-KD 338
+G +D + KV + E++ IS D K +M G H N H L KD
Sbjct: 174 DGTDDLYLKVRKFKQLENIHRRKFRISQDKLKKFDATMKQYLGAH-----NFHNFTLGKD 228
Query: 339 QNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQI 398
SS IR + E F K E ++ I I G+SFMLHQI
Sbjct: 229 FKESSAIRFMKEIKVSEP-----------FVIGDAKTE------WISIKIHGQSFMLHQI 271
Query: 399 RKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
RKM+ A + R P + ++ + + ++ +P AP+ L L A F
Sbjct: 272 RKMISMATLITRCGCPIERISQAYGQQ-KLNIPKAPALGLLLEAPVF 317
>gi|334326921|ref|XP_001378494.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Monodelphis domestica]
Length = 516
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L AL ++G I E++ +++K+A+ R
Sbjct: 99 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMRKMAFQRC 158
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D ++ +++N+HLP +I++ + SF+
Sbjct: 159 ARTDKGVSAAGQIVSLKV------WLID----NILEKINSHLPSHIRILGLKRVTGSFNS 208
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y Y+LP E + N +L ++G H FHN+T
Sbjct: 209 KNRCDARTYFYMLPTFAFAHKDHDVQDETYRLSSETLEKVNQLLASYKGTHSFHNFT 265
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C G + I + G+SFM+HQIRKMVG +A+ + +P ++ S +
Sbjct: 277 RYIMEMHCEAPFVREGMEFAVIKVKGQSFMMHQIRKMVGLVIAIMKGYVPESVMERSWGE 336
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR----PGVTRPEMQTMVESEEILKMVDEFYTSVTL 480
++ +P AP L L F R G+ P VE EE + + E Y
Sbjct: 337 -EKVDIPKAPGLGLVLERVHFEQYNRRFGNDGLHEP--LDWVEEEEKMTVFKEQY---IY 390
Query: 481 PEVSKFLDATKSPWTEWIENLEKFTSIPNEQLD 513
P ++K + + T W+ L PN D
Sbjct: 391 PTITK-TEMEEHSMTNWLNTL------PNHDFD 416
>gi|70166599|ref|NP_001002019.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|70166634|ref|NP_001002020.1| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Homo
sapiens]
gi|12804097|gb|AAH02901.1| Pseudouridylate synthase 1 [Homo sapiens]
gi|123989720|gb|ABM83888.1| pseudouridylate synthase 1 [synthetic construct]
gi|123999259|gb|ABM87208.1| pseudouridylate synthase 1 [synthetic construct]
gi|158257916|dbj|BAF84931.1| unnamed protein product [Homo sapiens]
gi|311347139|gb|ADP90495.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347142|gb|ADP90497.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347145|gb|ADP90499.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347148|gb|ADP90501.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347151|gb|ADP90503.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347154|gb|ADP90505.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347157|gb|ADP90507.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347160|gb|ADP90509.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347163|gb|ADP90511.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347166|gb|ADP90513.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347169|gb|ADP90515.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347172|gb|ADP90517.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347175|gb|ADP90519.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347178|gb|ADP90521.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347181|gb|ADP90523.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347184|gb|ADP90525.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347187|gb|ADP90527.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347190|gb|ADP90529.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347193|gb|ADP90531.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347196|gb|ADP90533.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347199|gb|ADP90535.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347202|gb|ADP90537.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347205|gb|ADP90539.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347208|gb|ADP90541.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347211|gb|ADP90543.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347214|gb|ADP90545.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347217|gb|ADP90547.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347220|gb|ADP90549.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347223|gb|ADP90551.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347226|gb|ADP90553.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347229|gb|ADP90555.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347232|gb|ADP90557.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347235|gb|ADP90559.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347238|gb|ADP90561.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347241|gb|ADP90563.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347244|gb|ADP90565.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347247|gb|ADP90567.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347250|gb|ADP90569.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347253|gb|ADP90571.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347256|gb|ADP90573.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 399
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 36 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 95
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 96 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 145
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 146 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 205
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 206 RLLACYKGTHNFHNFT 221
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 248 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 306
Query: 440 LRANSF 445
L F
Sbjct: 307 LERVHF 312
>gi|358392098|gb|EHK41502.1| hypothetical protein TRIATDRAFT_228328 [Trichoderma atroviride IMI
206040]
Length = 566
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ DE TIE +L A KAG I ++N + +K + AR
Sbjct: 74 KRKVAVMIGYAGTGYKGMQLNGDEE---TIERDLFQAFVKAGAISKANADDPRKSSLARC 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++N LP I+V+ I + S++
Sbjct: 131 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINEALPPQIRVWGIQRTNNSYNC 181
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 182 YQYCDSRWYEYLMPS 196
>gi|428184744|gb|EKX53598.1| hypothetical protein GUITHDRAFT_132703 [Guillardia theta CCMP2712]
Length = 355
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 84/175 (48%), Gaps = 38/175 (21%)
Query: 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD 163
STIEGELE AL + I + N+G+ +K+ W R++RTDKGVH+L ++ LK+ I PD
Sbjct: 53 STIEGELERALHDSKFISDLNFGHQKKVHWNRAARTDKGVHALGNVVGLKLLINPD---- 108
Query: 164 DPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI--------- 214
+D+ + VN HLP +I+V I +SF ++ N R+Y YL+P V
Sbjct: 109 ----VDMVEEVNKHLPSDIRVLDIKRVTKSFHAQQLANGRQYHYLIPTFVFESCEAPETS 164
Query: 215 ----------------GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
G +S E + DF G H FHN+T K
Sbjct: 165 ELIPEGKTENNKNFWEGCSSYTPTEEEIAKAKDFRVT-----GTHSFHNFTSGKK 214
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%), Gaps = 20/144 (13%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S G+ G+ Y+E+ + G+SF+LHQ + V + + R + ++ +
Sbjct: 222 RYIVSFKVGERVIFDGYEYLELRVEGQSFLLHQCDRDV--VMEMGRTCIFDNLYICRVQV 279
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
H +PL P LFL + + P + + ++I ++F T + LPE+
Sbjct: 280 H----IPLVPGVGLFLNKVLYRTYNKSNSCHPRLHVLTRQDKI----EDFKTKMMLPEIV 331
Query: 485 ----------KFLDATKSPWTEWI 498
K+L+ K + W+
Sbjct: 332 ARERDDHCTLKWLNEIKVFYNSWL 355
>gi|148688059|gb|EDL20006.1| pseudouridine synthase 1, isoform CRA_d [Mus musculus]
Length = 402
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 51 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 110
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 160
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 161 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLACYKG 216
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 217 THNFHNFTSQKGPR 230
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 236 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 295
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 296 -EKVDVPKAPGLGLVLERVHF 315
>gi|451993346|gb|EMD85820.1| hypothetical protein COCHEDRAFT_1118028 [Cochliobolus
heterostrophus C5]
Length = 582
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L A AG I ++N + +K + R
Sbjct: 107 KRKVAVMIGYSGTGYKGMQI---DNKQKTIEGDLFNAFVAAGAISKANASDPKKSSLVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I D D+ +++N+HLP I+V+ I + SF
Sbjct: 164 ARTDKGVHAAGNVVSLKLIIEDD---------DILEKINSHLPDQIRVWGIQRTIGSFSC 214
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 215 YQACDSRWYEYLIP 228
>gi|50294374|ref|XP_449598.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528912|emb|CAG62574.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 22/179 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL +GY+GT Y+G+Q H TI+ EL AL I +SN + K +++R++RT
Sbjct: 1 MALVLGYLGTGYQGIQYNPPAH---TIDNELFKALVATNCISQSNSDDFSKSSFSRATRT 57
Query: 140 DKGVHSLATMICLKM---EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
DKGVH+L ++ LKM E+P + +N LP +I+++ ++P ++ F+
Sbjct: 58 DKGVHALTNLVALKMQRYEVPQ----------QVKAELNEILPDDIRIWDVVPVKKKFNA 107
Query: 197 RRECNLRKYSYLLPAEVI--GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
R R Y Y++P ++ G +S L+ S ++ F I N F G H ++N+T R K
Sbjct: 108 RVMAGTRHYRYVIPTFLLQCGPHSDLST----SQLARFKNIWNMFLGTHNYYNFTPRRK 162
>gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus]
Length = 393
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 42 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 151
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 152 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLACYKG 207
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 208 THNFHNFTSQKGPR 221
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 227 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 286
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 287 -EKVDVPKAPGLGLVLERVHF 306
>gi|50756277|ref|XP_415090.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gallus
gallus]
Length = 409
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 63 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRC 122
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ + D+ +++N HLP +I++ + F+
Sbjct: 123 ARTDKGVSAAGQIVSLKVRLID----------DILEKINNHLPSHIRILGLKRVTGGFNS 172
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEID----SHISDFNAILNEFEGEHPFHNYT 249
+ +C+ R Y+Y+LP E + N++L ++G H FHN+T
Sbjct: 173 KNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARYKGTHNFHNFT 229
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I CG+ G + I + G+SFM+HQIRKM+G +A+ + P I+ S +
Sbjct: 241 RYIMEMYCGEPFVREGIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESIIERSWGE 300
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR 450
++ +P AP L L F R
Sbjct: 301 -EKVDVPKAPGLGLVLERVHFEKYNR 325
>gi|71000998|ref|XP_755180.1| tRNA pseudouridine synthase [Aspergillus fumigatus Af293]
gi|66852818|gb|EAL93142.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus Af293]
gi|159129271|gb|EDP54385.1| tRNA pseudouridine synthase, putative [Aspergillus fumigatus A1163]
Length = 577
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKE---KTIEGDLFTAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP DL K++N L I+V+ I + + F
Sbjct: 135 ARTDKGVHAAGNVVSLKLII------EDP---DLIKKINEKLCPQIRVWDIQVTNKGFSC 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRVYEYLIPS 200
>gi|119618938|gb|EAW98532.1| pseudouridylate synthase 1, isoform CRA_c [Homo sapiens]
Length = 432
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 14/188 (7%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
+++ E K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++
Sbjct: 77 GGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHG 136
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
+++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++
Sbjct: 137 EDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRIL 186
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEG 241
+ F+ + C+ R Y YLLP + E + N +L ++G
Sbjct: 187 GLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKG 246
Query: 242 EHPFHNYT 249
H FHN+T
Sbjct: 247 THNFHNFT 254
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 266 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 325
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 326 -EKVDVPKAPGLGLVLERVHF 345
>gi|4455035|gb|AAD21042.1| pseudouridine synthase 1 [Homo sapiens]
Length = 365
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 2 HPAKKLRSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 61
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 62 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 111
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 112 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 171
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 172 RLLACYKGTHNFHNFT 187
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 199 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 258
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 259 -EKVDVPKAPGLGLVLERVHF 278
>gi|70166645|ref|NP_079491.2| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Homo
sapiens]
gi|114152895|sp|Q9Y606.3|TRUA_HUMAN RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|18027830|gb|AAL55876.1|AF318369_1 unknown [Homo sapiens]
gi|94466373|gb|AAH09505.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|94466377|gb|AAH19320.2| Pseudouridylate synthase 1 [Homo sapiens]
gi|193786660|dbj|BAG51983.1| unnamed protein product [Homo sapiens]
gi|261860288|dbj|BAI46666.1| pseudouridylate synthase 1 [synthetic construct]
gi|311347138|gb|ADP90494.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347141|gb|ADP90496.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347144|gb|ADP90498.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347147|gb|ADP90500.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347150|gb|ADP90502.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347153|gb|ADP90504.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347156|gb|ADP90506.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347159|gb|ADP90508.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347162|gb|ADP90510.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347165|gb|ADP90512.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347168|gb|ADP90514.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347171|gb|ADP90516.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347174|gb|ADP90518.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347177|gb|ADP90520.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347180|gb|ADP90522.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347183|gb|ADP90524.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347186|gb|ADP90526.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347189|gb|ADP90528.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347192|gb|ADP90530.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347195|gb|ADP90532.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347198|gb|ADP90534.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347201|gb|ADP90536.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347204|gb|ADP90538.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347207|gb|ADP90540.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347210|gb|ADP90542.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347213|gb|ADP90544.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347216|gb|ADP90546.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347219|gb|ADP90548.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347222|gb|ADP90550.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347225|gb|ADP90552.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347228|gb|ADP90554.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347231|gb|ADP90556.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347234|gb|ADP90558.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347237|gb|ADP90560.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347240|gb|ADP90562.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347243|gb|ADP90564.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347246|gb|ADP90566.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347249|gb|ADP90568.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347252|gb|ADP90570.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
gi|311347255|gb|ADP90572.1| mitochondrial tRNA pseudouridine synthase A [Homo sapiens]
Length = 427
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 173
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 174 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 233
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 234 RLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus]
Length = 393
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 42 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 151
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 152 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLACYKG 207
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 208 THNFHNFTSQKGPR 221
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 227 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 286
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 287 -EKVDVPKAPGLGLVLERVHF 306
>gi|380481090|emb|CCF42047.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 622
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y+G+Q+ +E TIEG+L A AG I ++N + +K + R
Sbjct: 123 KRKVAVMVGYSGTGYKGMQINNEE---KTIEGDLFKAFVAAGAISKANADDHKKSSLVRC 179
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + ++ ++NA+LP I+V+ I + SF
Sbjct: 180 ARTDKGVHAAGNVISLKLIIEDE---------EIVDKINANLPDQIRVWGIQRTNNSFSC 230
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YLLP
Sbjct: 231 YQTCDSRWYEYLLP 244
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMVG A V R P + + S +RI +P AP L L
Sbjct: 458 WVSLKVHGQSFMMHQIRKMVGMAALVVRCATPLERIKQSYGP-TRIAIPKAPGLGLLLER 516
Query: 443 NSFSVRTR 450
F R
Sbjct: 517 PVFDAYNR 524
>gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus
musculus]
gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus]
gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus]
gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus]
Length = 393
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 101/194 (52%), Gaps = 25/194 (12%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 42 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 102 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 151
Query: 190 SQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEG 241
F+ + +C+ R Y Y+LP +V + +L+A + N +L ++G
Sbjct: 152 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAET----LQQVNRLLACYKG 207
Query: 242 EHPFHNYTERSKYR 255
H FHN+T + R
Sbjct: 208 THNFHNFTSQKGPR 221
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 227 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 286
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 287 -EKVDVPKAPGLGLVLERVHF 306
>gi|355786664|gb|EHH66847.1| hypothetical protein EGM_03911, partial [Macaca fascicularis]
Length = 363
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 19 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 78
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 79 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 128
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 129 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 185
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 197 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 256
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 257 -EKVDVPKAPGLGLVLERVHF 276
>gi|402888179|ref|XP_003907451.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Papio
anubis]
Length = 427
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 143 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 192
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 193 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|355564836|gb|EHH21336.1| hypothetical protein EGK_04370, partial [Macaca mulatta]
Length = 379
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 35 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 94
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 95 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 144
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 145 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 201
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 213 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 272
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 273 -EKVDVPKAPGLGLVLERVHF 292
>gi|353242840|emb|CCA74448.1| related to PUS1-pseudouridine synthase 1 [Piriformospora indica DSM
11827]
Length = 581
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 119/264 (45%), Gaps = 59/264 (22%)
Query: 59 TLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
T T P S + P K++ A+ +G+ GT Y G+Q+Q+D TIEG L +AL K G
Sbjct: 136 TGTNDPPTPSKPRLGP--KRQCAMLIGFCGTGYSGMQIQKD---AKTIEGSLFSALVKVG 190
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
+ E N + K+ R++RTD GVH+ ++ +K+ + D P +L +N++L
Sbjct: 191 AVSEDNSDDATKVNIQRAARTDAGVHAARNVVSIKIIM------DVPGVPNLVAAINSNL 244
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSY------LLPAEVIGIN------SQLTAAEID 226
P I+V+ I+ +Q SF+ R RKY+Y LLP E + S A ++
Sbjct: 245 PEEIRVWDIVRTQNSFNSR----TRKYTYFLPTYMLLPPEPTSVTATALRESSGEAYDVA 300
Query: 227 SH------------------------------ISDFNAILNEFEGEHPFHNYTERSKYRR 256
H ++ F A LN F G H F N+T +Y+
Sbjct: 301 EHPFWKSVANQPITPESTLFMLRKKWRIDEDTLNRFKAALNTFIGTHNFWNFTVGREYKE 360
Query: 257 KPHKTGRVSKRAKASKDAVFSRVE 280
K R K + S+ A++ E
Sbjct: 361 AAAK--RHIKTIEVSEPAIYGETE 382
>gi|383413803|gb|AFH30115.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
gi|384942394|gb|AFI34802.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Macaca
mulatta]
Length = 427
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 143 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 192
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 193 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|417410428|gb|JAA51687.1| Putative pseudouridylate synthase, partial [Desmodus rotundus]
Length = 402
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ + + Y G Y G+Q TIE +L +AL ++G I ES+ +++
Sbjct: 51 EPPRKLPKRKIVMLLAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPESHGEDMR 110
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ +
Sbjct: 111 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKR 160
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPF 245
F+ + C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 161 VTGGFNSKNRCDARTYVYMLPTFAFAHKDRDAQDETYRLSAETLQQVNRLLACYKGTHNF 220
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 221 HNFTSQKGPR 230
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R + C + + G + + + G+SFM HQIRKMVG VA+ + P D+L S +
Sbjct: 236 RYVLDVFCEEPFERDGMEFAVVKVKGQSFMTHQIRKMVGLVVAIAKGYAPEDLLQRSWGE 295
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR 450
+++ +P AP L L F R
Sbjct: 296 -AKVDVPKAPGLGLVLERVHFETYNR 320
>gi|426374727|ref|XP_004054216.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gorilla
gorilla gorilla]
Length = 427
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 101/191 (52%), Gaps = 22/191 (11%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+++ E + K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++
Sbjct: 73 GDEERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGE 132
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++
Sbjct: 133 DMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILG 182
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNE 238
+ F+ + C+ R Y YLLP +V + +L+A + N +L
Sbjct: 183 LKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDESYRLSAETLQR----VNRLLAC 238
Query: 239 FEGEHPFHNYT 249
++G H FHN+T
Sbjct: 239 YKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|387019437|gb|AFJ51836.1| tRNA pseudouridine synthase A, mitochondrial-like [Crotalus
adamanteus]
Length = 404
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 103/203 (50%), Gaps = 24/203 (11%)
Query: 57 SHTLTRPTPNSSDDKWEPVR--KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL 114
H + R N + K E + KKKV L + Y G Y G+Q TIE +L +AL
Sbjct: 37 GHEVKRFKDNEEEVKDEAKKFPKKKVVLLLVYCGKGYHGMQRNVKTSQYRTIEDDLVSAL 96
Query: 115 FKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV 174
K+G I E++ +++K+++ R +RTDKGV + ++ LK+ W + D+ +++
Sbjct: 97 IKSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKV------WLIE----DILQKI 146
Query: 175 NAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINS--------QLTAAEID 226
N HLP +I++ + F+ + C+ R YSY+LP +L+A ++
Sbjct: 147 NEHLPSHIRILGLKRVTGKFNSKNRCDARTYSYMLPTFAFAHKDDAPQDETYRLSAETLE 206
Query: 227 SHISDFNAILNEFEGEHPFHNYT 249
+ N +L ++G H FHN+T
Sbjct: 207 A----VNHLLACYKGTHNFHNFT 225
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + + + G+SFM+HQIRKM+G +A+ + IL S + R+ +P AP L
Sbjct: 252 GMEFAVVKVKGQSFMMHQIRKMIGLVIAIVKGHATLSILEQSWGE-ERVDIPKAPGLGLI 310
Query: 440 LRANSF 445
L F
Sbjct: 311 LERVHF 316
>gi|112180395|gb|AAH21446.2| Pseudouridine synthase 1 [Mus musculus]
Length = 423
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNF 241
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 242 HNFTSQKGPR 251
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>gi|156048366|ref|XP_001590150.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980]
gi|154693311|gb|EDN93049.1| hypothetical protein SS1G_08914 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 599
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K KVA+ +GY GT Y+GLQ+ E TIEG++ A AG I ++N + +K A R
Sbjct: 55 KHKVAVMIGYAGTGYKGLQINTKE---KTIEGDMFKAFVAAGAISKANANDPKKSALVRC 111
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ +DP ++ + +N+HLP I+V+ I + SF+
Sbjct: 112 ARTDKGVHAAGNVLSLKL------ITEDP---NVVENINSHLPDQIRVWGIERTTGSFNC 162
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 163 YQMCDSRWYEYLIP 176
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV A V R P +++ + ++I +P APS L L A
Sbjct: 441 WLSLKVHGQSFMMHQIRKMVAMAALVVRCASPMELIKETYTA-AKISIPKAPSLGLLLEA 499
Query: 443 NSF 445
F
Sbjct: 500 PVF 502
>gi|449548175|gb|EMD39142.1| hypothetical protein CERSUDRAFT_81905 [Ceriporiopsis subvermispora
B]
Length = 427
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 95/206 (46%), Gaps = 50/206 (24%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+G+ G Y G+Q+Q E + TIEG L AL K G + + N N K+ R++RTD GV
Sbjct: 1 MGFCGAGYNGMQIQ-TEPGIKTIEGTLFNALVKVGAVSKDNADNPTKVNLGRAARTDAGV 59
Query: 144 HSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
H+ ++ +K+ IP G+ D RVN LP I+++ ++ Q+SF+ R C
Sbjct: 60 HAAGNLVSMKVITAIP---------GVDDFVGRVNEELPPEIRLWGVVRVQKSFNARTSC 110
Query: 201 NLRKYSYLLPAEVI-------GINSQL--TAAEIDSH----------------------- 228
+ RKY+Y P+ ++ G+ L T +E+ SH
Sbjct: 111 DSRKYTYYFPSYLLIPPKPESGLFEALRRTGSEVPSHPFWTKLEANSTLENDLAAKRAFR 170
Query: 229 -----ISDFNAILNEFEGEHPFHNYT 249
+ +FEG H FHN+T
Sbjct: 171 ASPEQVQALRETAKKFEGTHNFHNFT 196
>gi|380795213|gb|AFE69482.1| tRNA pseudouridine synthase A, mitochondrial isoform 2, partial
[Macaca mulatta]
Length = 374
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 30 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 89
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 90 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 139
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 140 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 196
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 208 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 267
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 268 -EKVDVPKAPGLGLVLERVHF 287
>gi|70906470|ref|NP_062674.2| tRNA pseudouridine synthase A, mitochondrial isoform 2 [Mus
musculus]
gi|114152896|sp|Q9WU56.2|TRUA_MOUSE RecName: Full=tRNA pseudouridine synthase A, mitochondrial;
AltName: Full=tRNA pseudouridine(38-40) synthase;
AltName: Full=tRNA pseudouridylate synthase I; AltName:
Full=tRNA-uridine isomerase I; Flags: Precursor
gi|112180429|gb|AAH34359.2| Pseudouridine synthase 1 [Mus musculus]
gi|148688056|gb|EDL20003.1| pseudouridine synthase 1, isoform CRA_a [Mus musculus]
Length = 423
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNF 241
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 242 HNFTSQKGPR 251
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>gi|114647862|ref|XP_001139560.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
troglodytes]
gi|410207876|gb|JAA01157.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410293160|gb|JAA25180.1| pseudouridylate synthase 1 [Pan troglodytes]
gi|410341825|gb|JAA39859.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 427
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E + K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W + D+ +++N+H
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLIE----DILEKINSH 173
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 174 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 233
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 234 RLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|410251032|gb|JAA13483.1| pseudouridylate synthase 1 [Pan troglodytes]
Length = 438
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E + K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 75 HPAKKLKSGGDEERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 134
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W + D+ +++N+H
Sbjct: 135 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLIE----DILEKINSH 184
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 185 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 244
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 245 RLLACYKGTHNFHNFT 260
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 287 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 345
Query: 440 LRANSF 445
L F
Sbjct: 346 LERVHF 351
>gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like
[Saccoglossus kowalevskii]
Length = 320
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 104/200 (52%), Gaps = 16/200 (8%)
Query: 51 KSSPSVSHTLTRPT-PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGE 109
++ SVS T + T N+ +K + K+KV L + Y G Y G MQR++ + TIEG+
Sbjct: 30 RTEKSVSDTAPKETVQNAEQNKRKA--KRKVVLLLSYSGKGYMG--MQRNK-GVETIEGD 84
Query: 110 LETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID 169
L A+ AG + +S+ QK+ + R +RTDKGV ++ ++ LKM + +A
Sbjct: 85 LIKAIVTAGAVPQSHADIPQKMQFQRCARTDKGVSAVRQVVSLKMMLVDNA--------- 135
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI 229
+++N LP +I+V + + F+ + C+ R YSYL+P + N D
Sbjct: 136 -VEQINNSLPPSIRVITYKRTTGGFNAKNTCSHRTYSYLMPTFALSSNCNENYRVTDEVH 194
Query: 230 SDFNAILNEFEGEHPFHNYT 249
+LN ++G H FHN+T
Sbjct: 195 QKAQDLLNCYKGTHNFHNFT 214
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V I+I G+SFM+HQIRKM+G +A+ R + P+ L + ++ +P APS L
Sbjct: 241 GLEFVVITIIGQSFMIHQIRKMIGLVIAIIRGVAPKSTLD-KCWEAGKMDIPKAPSLGLM 299
Query: 440 L 440
L
Sbjct: 300 L 300
>gi|109099290|ref|XP_001113470.1| PREDICTED: tRNA pseudouridine synthase A-like [Macaca mulatta]
Length = 483
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 139 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 198
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 199 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 248
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 249 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 305
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 332 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGTE-KVDVPKAPGLGLV 390
Query: 440 LRANSF 445
L F
Sbjct: 391 LERVHF 396
>gi|397487065|ref|XP_003814633.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pan
paniscus]
Length = 427
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E + K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W + D+ +++N+H
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLIE----DILEKINSH 173
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 174 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 233
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 234 RLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>gi|351698591|gb|EHB01510.1| tRNA pseudouridine synthase A [Heterocephalus glaber]
Length = 420
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 21/195 (10%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I ES+ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNSGSSKFKTIEDDLVSALVRAGCIPESHGEDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W + DL ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLIE----DLLDKINSHLPSHIRILGLRR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L +G H F
Sbjct: 182 VTGGFNSKNKCDARTYFYMLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACHKGTHNF 241
Query: 246 HNYTERSKYRRKPHK 260
HN+T ++ PH+
Sbjct: 242 HNFTS----QKGPHE 252
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S + +++ +P AP L
Sbjct: 272 GLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLACSWGE-AKVDVPKAPGLGLV 330
Query: 440 LRANSF 445
L F
Sbjct: 331 LERVHF 336
>gi|328771895|gb|EGF81934.1| hypothetical protein BATDEDRAFT_87010 [Batrachochytrium
dendrobatidis JAM81]
Length = 491
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 63/221 (28%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV L + Y GT Y+G+Q+ D + +IE +L AL +G I A+ R
Sbjct: 98 KKKVVLLMSYCGTGYQGMQINPD---VPSIELDLHKALAASGAI-----------AFMRC 143
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LKM I +D D+ +R+NA LP I+V+ Q+ F
Sbjct: 144 ARTDKGVHAGGQVVSLKMII-----QDS----DIIERINARLPPQIRVWGYARVQQQFHA 194
Query: 197 RRECNLRKYSYLLPAEV-------------IGINSQLT----------AAEIDSH----- 228
+ C+ R Y Y+LP V IG+ + +T EI H
Sbjct: 195 KHHCDSRIYEYILPTSVLKKVDPTYYPLSKIGVAAGVTFENMGRAKMEPIEIPEHTDNEK 254
Query: 229 ------------ISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ +F AILNE+ G H +HN+T K+ K
Sbjct: 255 ETIQGYRTNHQELEEFRAILNEYVGTHNYHNFTIGRKFEDK 295
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 16/141 (11%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S R I S C + + +V + + G+SFMLHQIRKM+G AV + R P++++ +
Sbjct: 296 SSIRYIISFICSEPFQRDNTEWVSLKVKGQSFMLHQIRKMIGLAVMMMRTSTPKNLIAST 355
Query: 422 LAKHSRIVLPLAPSEVLFLRA---NSFSVRTRP-GVTRPEMQTMVESEEILKMVDEF--- 474
++ +RI +P AP+ L L +++ + +P GV R +++ ++ +++D+F
Sbjct: 356 FSQ-TRINIPKAPALGLLLERPLFENYNSQIQPKGVDR----DVIDFDQYKELIDQFKED 410
Query: 475 --YTSVTLPEVSK--FLDATK 491
Y + E+SK FL+ T+
Sbjct: 411 WIYKAQIQEEISKGHFLEWTR 431
>gi|119480651|ref|XP_001260354.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
gi|119408508|gb|EAW18457.1| tRNA pseudouridine synthase, putative [Neosartorya fischeri NRRL
181]
Length = 577
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKE---KTIEGDLFTAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP DL K++N L I+V+ I + + F
Sbjct: 135 ARTDKGVHAAGNVVSLKLIV------EDP---DLIKKINEKLCPQIRVWDIQVTNKGFSC 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRVYEYLIPS 200
>gi|169619633|ref|XP_001803229.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
gi|111058695|gb|EAT79815.1| hypothetical protein SNOG_13015 [Phaeosphaeria nodorum SN15]
Length = 621
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L TA AG I ++N + +K + R
Sbjct: 104 KRKVAVMIGYSGTGYKGMQI---DNKQKTIEGDLFTAFVAAGAISKANADDPKKSSLVRC 160
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ +++N+HL I+V+ I + SF
Sbjct: 161 ARTDKGVHAAGNVISLKLIIEEE---------DIVEKINSHLSEQIRVWGIQRTTGSFSC 211
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 212 YQACDSRWYEYLIP 225
>gi|238883128|gb|EEQ46766.1| tRNA pseudouridine synthase 1 [Candida albicans WO-1]
Length = 461
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GT Y G+Q+Q D + + TIE ++ A+ AG I N +L+K + R++RTDKGV
Sbjct: 2 LGYCGTGYNGMQVQNDPN-VKTIEKDIYDAMATAGAISAENAVDLKKSGFQRAARTDKGV 60
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ +I LKM I +DP ++ ++N LP+ I+++ I + + FD R+ C+ R
Sbjct: 61 HAAGNVISLKMII------EDP---EIINKINDLLPKQIRIWGIQRTTKGFDCRKCCSSR 111
Query: 204 KYSYLLPA 211
Y YLLP
Sbjct: 112 IYEYLLPT 119
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ I I G+SFMLHQIRKM+ A V R LP I+ + + ++I +P AP+ L
Sbjct: 281 GTEWISIKIHGQSFMLHQIRKMIAMAALVVRLSLPCGIIN-NFFQSTKINIPKAPALGLL 339
Query: 440 LRANSF 445
L F
Sbjct: 340 LENPVF 345
>gi|340056882|emb|CCC51221.1| putative pseudouridylate synthase I, fragment [Trypanosoma vivax
Y486]
Length = 512
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 7/149 (4%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQR-DEHSLSTIEGELETALFKAGGIRESNY 125
+ D++ E K+KVA+ GYVG Y GLQ +H T+E EL A+ K I E NY
Sbjct: 11 AKDNQLEKRPKRKVAIVFGYVGERYCGLQWNHLPDHP--TVEEELLRAMRKTNMISEENY 68
Query: 126 GN---LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRN 181
QK+ W R+SRTDKGVH+L ++ L +P D + ++ AKR +N LP +
Sbjct: 69 AQDKVQQKLNWERTSRTDKGVHALRNVVSLNAMLPYSKNSADEFDLEEAKRLLNDVLPPD 128
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLP 210
I ++ ++P RSF+ C R Y Y LP
Sbjct: 129 IVIYEVVPVTRSFNAYMLCGGRTYEYYLP 157
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 372 CGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS-LAKHSRIVL 430
CG LE V I + G+SFM +QIRKM+GT A+ LP + L L K R
Sbjct: 370 CGGLE------VVRIELCGQSFMFNQIRKMIGTVAAMCVAGLPPEYLRQHFLNKAIRCGT 423
Query: 431 PLAPSEVLFL 440
P+AP+ LFL
Sbjct: 424 PMAPANGLFL 433
>gi|390356991|ref|XP_003728903.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 512
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 66 NSSDD-KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
N SD K + K+KVA+ + Y G +Y G MQR+ + TIE +L AL K+G I E
Sbjct: 76 NGSDGPKRSKLLKRKVAILLSYAGANYVG--MQRNP-GVQTIEEDLVNALVKSGAIPEDC 132
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
N+ K+++ R +RTDKGV + ++ LK+ + +L +R+N HLP I+V
Sbjct: 133 GRNMNKMSFQRCARTDKGVSAAGQVVSLKVLMLD----------NLMERINEHLPPVIRV 182
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEG 241
+ + F+ + C R Y YL+P T + D I + L ++ G
Sbjct: 183 MGVTRTTGGFNCKNNCEFRTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIG 242
Query: 242 EHPFHNYT 249
H FHN+T
Sbjct: 243 THNFHNFT 250
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA+ + K F+C G ++ L F I + G+SFMLHQIRKM+G +AV R L P +
Sbjct: 259 SANRYIKEFTCEKGFVDDGLEFAV--IKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVE 316
Query: 420 LSLAKHSRIVLPLAPSEVLFLRA 442
+ + ++ +P AP L L A
Sbjct: 317 RAF-QEPKLDIPRAPGLGLVLEA 338
>gi|73994983|ref|XP_852307.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Canis
lupus familiaris]
Length = 409
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 34/203 (16%)
Query: 62 RPTPNSSDDKWEPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
R P+ D EP RK +K+ L + Y G Y G+Q TIE +L +AL ++G
Sbjct: 43 RSGPDGEPDG-EPHRKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSG 101
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHL 178
I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HL
Sbjct: 102 CIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHL 151
Query: 179 PRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------- 231
P +I++ + F+ + +C+ R Y Y+LP A D + D
Sbjct: 152 PPHIRILGLKRVTGGFNSKNKCDARTYFYMLPT--------FAFAHKDHDVQDESYRLSA 203
Query: 232 -----FNAILNEFEGEHPFHNYT 249
N +L ++G H FHN+T
Sbjct: 204 ETLQRVNGLLACYKGTHNFHNFT 226
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
AS R I C + G + I + G+SFM HQIRKMVG VA+ + P +L
Sbjct: 234 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLER 293
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSF 445
S +++ +P AP L L F
Sbjct: 294 SWGD-AKVDVPKAPGLGLVLERVHF 317
>gi|422293209|gb|EKU20509.1| trna pseudouridine synthase, partial [Nannochloropsis gaditana
CCMP526]
Length = 376
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 60/80 (75%), Gaps = 3/80 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GTD++G+QM TIE ELE A+++AG I+E+N+G+LQKI W+RS
Sbjct: 90 KKKVAMIIGYCGTDFQGMQMN---PGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRS 146
Query: 137 SRTDKGVHSLATMICLKMEI 156
RTDKGVH+ A ++ K+ +
Sbjct: 147 GRTDKGVHAAAQVVGCKLHV 166
>gi|390356993|ref|XP_796203.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 510
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 94/188 (50%), Gaps = 17/188 (9%)
Query: 66 NSSDD-KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
N SD K + K+KVA+ + Y G +Y G MQR+ + TIE +L AL K+G I E
Sbjct: 74 NGSDGPKRSKLLKRKVAILLSYAGANYVG--MQRNP-GVQTIEEDLVNALVKSGAIPEDC 130
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
N+ K+++ R +RTDKGV + ++ LK+ + +L +R+N HLP I+V
Sbjct: 131 GRNMNKMSFQRCARTDKGVSAAGQVVSLKVLMLD----------NLMERINEHLPPVIRV 180
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEG 241
+ + F+ + C R Y YL+P T + D I + L ++ G
Sbjct: 181 MGVTRTTGGFNCKNNCEFRTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIG 240
Query: 242 EHPFHNYT 249
H FHN+T
Sbjct: 241 THNFHNFT 248
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA+ + K F+C G ++ + F I + G+SFMLHQIRKM+G +AV R L P +
Sbjct: 257 SANRYIKEFTCEKGFVDDGMEFAV--IKVKGQSFMLHQIRKMLGLVLAVVRGLTPPSTVE 314
Query: 420 LSLAKHSRIVLPLAPSEVLFLRA 442
+ + ++ +P AP L L A
Sbjct: 315 RAF-QEPKLDIPRAPGLGLVLEA 336
>gi|367049226|ref|XP_003654992.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
gi|347002256|gb|AEO68656.1| hypothetical protein THITE_2118253 [Thielavia terrestris NRRL 8126]
Length = 569
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG++ A AG I ++N + +K + R
Sbjct: 71 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRC 127
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ R+N HLP I+V+ I + F
Sbjct: 128 ARTDKGVHAAGNVLSLKLIVEDE---------DVVDRINQHLPEQIRVWGIQRTNNGFSC 178
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 179 YQACDSRWYEYLMPS 193
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV V R P D + S RI +P AP L L
Sbjct: 405 WLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDTILQSYGPR-RISIPKAPGLGLMLER 463
Query: 443 NSFS 446
F+
Sbjct: 464 PMFT 467
>gi|76638649|ref|XP_593895.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Bos taurus]
gi|297484682|ref|XP_002694500.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Bos
taurus]
gi|296478661|tpg|DAA20776.1| TPA: pseudouridylate synthase 1 [Bos taurus]
gi|440909768|gb|ELR59645.1| tRNA pseudouridine synthase A, mitochondrial [Bos grunniens mutus]
Length = 433
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 18/188 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 89 KRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 148
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 149 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 198
Query: 197 RRECNLRKYSYLLPAEVIG---INSQLTAAEIDSH-ISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP +SQ + + + N +L ++G H FHN+T
Sbjct: 199 KNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSAETLGRVNRLLACYKGTHNFHNFTS-- 256
Query: 253 KYRRKPHK 260
++ PH+
Sbjct: 257 --QKGPHE 262
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P +L + +++ +P AP L
Sbjct: 282 GMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLERCWGE-AKVDVPKAPGLGLV 340
Query: 440 LRANSF 445
L F
Sbjct: 341 LERVHF 346
>gi|320588025|gb|EFX00500.1| tRNA pseudouridine synthase [Grosmannia clavigera kw1407]
Length = 899
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 83/138 (60%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT YRG+Q+ DE TIEG+L A AG I ++N + +K + R
Sbjct: 416 KRKVAVMIGYAGTGYRGMQINHDE---KTIEGDLFAAFVAAGAIAKTNADDPKKSSLVRC 472
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I DA D+ +R+NAHLP I+V+ I + SF
Sbjct: 473 ARTDKGVHAAGNVISLKL-IVEDA--------DVVERINAHLPPQIRVWGIQRTINSFSC 523
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YLLP+ +
Sbjct: 524 YQACDSRWYEYLLPSYAL 541
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKR-KLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
++ + + G+SFM+HQIRKMV AV + R P + LS RI +P AP L L
Sbjct: 732 WLSLRVHGQSFMMHQIRKMVAMAVMLTRCGTAPGPAMKLSYGPR-RISIPRAPGFGLLLE 790
Query: 442 ANSF 445
F
Sbjct: 791 RPVF 794
>gi|366993178|ref|XP_003676354.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
gi|342302220|emb|CCC69993.1| hypothetical protein NCAS_0D04120 [Naumovozyma castellii CBS 4309]
Length = 391
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 44/230 (19%)
Query: 38 PLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQ 97
PLS Y+C S S + TR +RK++V + +GYVGT Y G MQ
Sbjct: 29 PLSLYKCRRYLSDYLSDT-----TR------------LRKRRVGILLGYVGTGYYG--MQ 69
Query: 98 RDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIP 157
+ TIE L L G I + N + K + R+ RTDKGVH++ +I +KM
Sbjct: 70 YNTPMFPTIESTLFDTLVSVGCISKDNSVDFHKNGFMRACRTDKGVHAMVNVISVKM--- 126
Query: 158 PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG-- 215
+ D+P+ D+ ++ +P+ I+V+ I + F+ RR + R Y YLLP V+
Sbjct: 127 --SKYDEPHIKDMINKL--LVPKGIRVWDIKMVNKRFNCRRAVSSRWYEYLLPTYVLKEP 182
Query: 216 -----INSQLTAAEI-----------DSHISDFNAILNEFEGEHPFHNYT 249
+N +T+ ++ D I ++LN + G FHN+T
Sbjct: 183 RKDVLMNEGVTSIDLVYYNEDCYSVPDLRIGKLESVLNHYLGTKRFHNFT 232
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I G+SFMLHQIRKM+ A + R L + + + SRI +P AP+ L L
Sbjct: 264 WVSLKIQGQSFMLHQIRKMIWLATLIARSNLQIEYVD-KFLQDSRIYIPNAPATGLLLNY 322
Query: 443 NSFS 446
F+
Sbjct: 323 PEFA 326
>gi|294897084|ref|XP_002775815.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
gi|239882168|gb|EER07631.1| pseudouridylate synthase, putative [Perkinsus marinus ATCC 50983]
Length = 708
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 94/185 (50%), Gaps = 22/185 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDE-HSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
K+K AL VG+ GT YRGLQM D + +E +L A+ +AG ++ + L +I W R
Sbjct: 23 KRKCALVVGFNGTKYRGLQMNADNCDRIDYVESDLLGAMKRAGVVK-PDVVRLDEIQWTR 81
Query: 136 SSRTDKGVHSLATMICLKM---EIPP-----DAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
SSRTD GV + ++ K+ E P A + + ++ + +N LPR IKVF+
Sbjct: 82 SSRTDAGVSAARIVVSAKILVHEAPEVKGNRQADRVNRTYPEVVEAINKELPREIKVFNC 141
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ SF+ ++ CN R YSY +P + G +L A L +F H +HN
Sbjct: 142 MKICASFNAQKSCNWRHYSYYMPMSLAGDVDKLQEA------------LGKFTNAHNYHN 189
Query: 248 YTERS 252
+T S
Sbjct: 190 FTNLS 194
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 367 IFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPR-DILTLSLAKH 425
I S + +E G +V + + G+ F+ +QIR M+G +A R + P + ++ +
Sbjct: 359 IHSFTATPIEMGNGEKWVRVDVRGQFFLYNQIRLMIGAGIAYARGVFPSISCIQFAIDTN 418
Query: 426 SRIVLPLAPSEVLFLRANSFS-VRTRPGV--------------TRPEMQTMVE--SEEIL 468
+ PLAP+ L L + F+ + TR G ++P + E S E
Sbjct: 419 YKFHSPLAPACGLILHTSGFTGMDTRAGYAIMEHGHHHSAIGESKPPKSAVYEFLSAEQQ 478
Query: 469 KMVDEFYTSVTLPEVSKFL---DATKSPWTEWIENLEKFTS 506
+ D+F S LPEV + D K EW+ N T+
Sbjct: 479 QEADDFLKSEILPEVRRLWLDSDVEKEFEDEWLNNAAPITT 519
>gi|226506356|ref|NP_001150144.1| LOC100283773 [Zea mays]
gi|195637102|gb|ACG38019.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 561
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 137/293 (46%), Gaps = 35/293 (11%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 50 KRRKVAILLGYCGAGYQGMQKNP---GARTIEGDLEEALYQAGAVPEADRSAPRRYDWAR 106
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ + + SF+
Sbjct: 107 AARTDKGVSAAAQVVSGRFYVDPPGFID---------RLNAQLAPQIRAYGYVRVTNSFN 157
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
++ C+ R+Y YLLP + A + +H D A++ E S+
Sbjct: 158 AKKFCDRRRYLYLLP---------VFALDPSAH-PDREAVMASMGSGSELTKCLECSERG 207
Query: 256 RK-PHKTGRVSKRAKASKDAVFSRVEESEGEEDGF---SKVEE--SDGEEDLGIGGEISS 309
RK P GR K ++ V + VE S +E G +K + SDG GE+ S
Sbjct: 208 RKIPGVMGREGKLPSPGQNGVDAPVEGSSHDESGTLGDAKCDHTSSDGGNPFA-HGEVGS 266
Query: 310 DDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSAS 362
+ K + VSG E AN N S + + +Y +E KL A+
Sbjct: 267 -NSKEKPDLPVSGDGTE-----VANAEMGSNGDSDVVSSDIYMGNEEKKLPAA 313
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G +V + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 377 RFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVIRNCAPESIYDVAFRK 436
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 437 DVNLNVPTAPEVGLYLDECMFT 458
>gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi]
gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi]
Length = 477
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 39/222 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEH-SLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++VA+ +GY+GT+Y G Q + ++ T+E + AL +AGG+ N ++ K+ + RS
Sbjct: 116 RRVAIFIGYLGTNYNGSQTSNFTNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVHFHRS 175
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVH+ + ++ +K+ + P L + + LP +I + +SF+
Sbjct: 176 SRTDKGVHAASNVLEMKLLMKP----------GLEEEMRKLLPEDIVFYGYKKVSKSFNA 225
Query: 197 RRECNLRKYSYLLPA--------------------------EVIGINSQLTAAEIDSHIS 230
+ C R Y YLLPA E +N D I
Sbjct: 226 KEHCTARTYEYLLPAFALSPDPKAATWFGQINIDKITKEDVESENLNDIYNYDPTDEQIE 285
Query: 231 DFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASK 272
N +L F G + FHNYT+ +K KP+ R + + SK
Sbjct: 286 KANRVLKNFVGTNSFHNYTQLTK--AKPNSFNRHITKFECSK 325
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C K + G V+++++G SF+ +QIRKMVG +AV R L + S+ K
Sbjct: 316 RHITKFECSKAFEIDGMKVVKLTVTGSSFIYNQIRKMVGFMIAVMRGSLNESDFSTSVDK 375
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
+PLAP+ L L F
Sbjct: 376 EVTANVPLAPANGLLLCEQEF 396
>gi|116208668|ref|XP_001230143.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
gi|88184224|gb|EAQ91692.1| hypothetical protein CHGG_03627 [Chaetomium globosum CBS 148.51]
Length = 584
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 76/135 (56%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG+L +A AG I ++N + +K + R
Sbjct: 107 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDLFSAFVAAGAISKANADDPKKSSLVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ ++N HLP I+++ I + F
Sbjct: 164 ARTDKGVHAAGNVLSLKLIVEDE---------DIVTKINEHLPEQIRIWGIHRTSNGFSA 214
Query: 197 RRECNLRKYSYLLPA 211
+ C R Y YL+P+
Sbjct: 215 YQACESRWYEYLMPS 229
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 361 ASHFRKIFSCSCGKLEKSLG-FGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
AS R I S ++G ++ + + G+SFM+HQIRKMV AV V R P ++
Sbjct: 398 ASAMRHIKSFQVNTTPITIGDTEWLSLMVHGQSFMMHQIRKMVAMAVMVVRCGAPLSTIS 457
Query: 420 LSLAKHSRIVLPLAPSEVLFLRANSFS 446
S RI +P AP L L F+
Sbjct: 458 ESYGPR-RISIPKAPGLGLMLERPMFT 483
>gi|403292192|ref|XP_003937138.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 400
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 56 KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 115
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D + +++N+HLP +I++ + F+
Sbjct: 116 ARTDKGVSAAGQVVSLKV------WLID----GILEKINSHLPSHIRILGLKRVTGGFNS 165
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ +C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 166 KNKCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLARYKGTHNFHNFT 222
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 234 RYILDMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT 293
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 294 -EKVDVPKAPGLGLVLERVHF 313
>gi|307102143|gb|EFN50538.1| hypothetical protein CHLNCDRAFT_138514 [Chlorella variabilis]
Length = 346
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 96/194 (49%), Gaps = 17/194 (8%)
Query: 331 QHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCG-KLEKSLGFGY--VEIS 387
QHA+ K Q ++ W +E D+AD + HFR I C G +LE + G + +S
Sbjct: 145 QHASSKKGQ-----VQVAWKFERDDADPIVRRHFRFIEWCRAGTELEVLVPGGQPCIHLS 199
Query: 388 ISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSV 447
+ G SFMLHQIRKMVG AVAV R LP ++L SLA +RI LPLAP L L FS
Sbjct: 200 LQGSSFMLHQIRKMVGMAVAVARGNLPLELLEFSLATPARINLPLAPPSTLMLTGALFSP 259
Query: 448 --RTRPGVTRPEMQTMVE----SEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
R+ G Q E E+ + +F LP + L + + W W +L
Sbjct: 260 FKRSWSGQAAVAAQWTGEVLQLKEQGVAAQQQFLREAMLPALDSLLASEE--WRHWELDL 317
Query: 502 EKFTSIPNEQLDEV 515
++ N ++ EV
Sbjct: 318 DRLW-FDNAEVQEV 330
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 62/140 (44%), Gaps = 51/140 (36%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVAL VGY GT RGLQMQR TIE LE A+F+AGGI SN GNL K+
Sbjct: 41 KRKVALFVGYSGTGRRGLQMQRSSAPEETIEDVLEEAIFQAGGILPSNRGNLGKV----- 95
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+VFS+ +S++
Sbjct: 96 ----------------------------------------------RVFSVQRVSKSWNA 109
Query: 197 RRECNLRKYSYLLPAEVIGI 216
RREC R YSY +PA V+G+
Sbjct: 110 RRECIRRSYSYFVPASVLGL 129
>gi|255539108|ref|XP_002510619.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223551320|gb|EEF52806.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 584
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 12/150 (8%)
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
T P ++ K + +++K+A+ Y G Y+G+Q TIEG+LE ALF +G +
Sbjct: 37 TAPGDEAATVKKQRYKRRKMAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALFHSGAV 93
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
E + G ++ WARS+RTDKGV ++ +I + + DP G L R+N+ LP
Sbjct: 94 PEQDRGCPKRYDWARSARTDKGVSAVGQVISGRFYV-------DPPG--LVDRLNSILPS 144
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
I++F SF+ ++ C+ R+Y YL+P
Sbjct: 145 QIRIFGYKRVTASFNAKKFCDRRRYVYLIP 174
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ + G+SFMLHQIRKM+G AVA+ R P +++ +L K +I +P AP L+
Sbjct: 402 GIEFVKCEVIGQSFMLHQIRKMIGLAVAIMRNCAPESLISTALQKDVKINVPTAPEVGLY 461
Query: 440 LRANSFS 446
L F+
Sbjct: 462 LDECFFT 468
>gi|171685180|ref|XP_001907531.1| hypothetical protein [Podospora anserina S mat+]
gi|170942551|emb|CAP68202.1| unnamed protein product [Podospora anserina S mat+]
Length = 615
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q+ H TIEG++ A AG I ++N + +K + R
Sbjct: 119 KRKVAVLIGYAGTGYHGIQIN---HKEKTIEGDIFAAFVAAGAISKANADDPKKSSLVRC 175
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ +++N+HLP I+++ I + +F
Sbjct: 176 ARTDKGVHAAGNVLSLKLIVEDE---------DIVEKINSHLPEQIRIWGIQRTVNAFSC 226
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 227 YQSCDSRWYEYLMPS 241
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV AV V R P D++ S RI +P AP L L
Sbjct: 452 WLSLKVHGQSFMMHQIRKMVAMAVMVVRCGAPLDLIKESYGPR-RISIPKAPGLGLMLER 510
Query: 443 NSFSVRTR--PGVTRPEMQTMVESEEILKMVDE 473
F+ + G + + ++I+K DE
Sbjct: 511 PMFTEYNKRAAGFDKEPIDFSKYEDQIIKFKDE 543
>gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex]
Length = 319
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 21/180 (11%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+KKK A+ + Y G +Y G+Q H T+EGEL A K + + ++ + Q + + R
Sbjct: 1 KKKKFAILLSYSGQNYLGMQFN---HGFKTVEGELFQAFMKLEIMDDESFKSPQTVHFQR 57
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV ++ +I LK+ P + DL ++N+ LP IKVF++ F+
Sbjct: 58 AARTDKGVSAVRQVISLKIRTPDE---------DLVNQLNSLLPNCIKVFAMRKVTGGFN 108
Query: 196 PRRECNLRKYSYLLPA------EVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R YSY++P EV + ++I + + N++L+ F+G +HN+T
Sbjct: 109 SKIACDSRSYSYVMPTFAFTSKEVAPTHGYRVTSKI---LDEVNSLLSVFKGTRNYHNFT 165
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I SCG +V+I+I G+SFMLHQIRKM+G ++V R +PR+IL + K
Sbjct: 177 RYITQFSCGDPFMIKEVEFVKITIKGQSFMLHQIRKMIGLTISVMRGFVPREILDKAF-K 235
Query: 425 HSRIVLPLAPSEVLFL 440
R+ +P APS L L
Sbjct: 236 MERVNVPTAPSLNLLL 251
>gi|403216363|emb|CCK70860.1| hypothetical protein KNAG_0F01920 [Kazachstania naganishii CBS
8797]
Length = 372
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 39/209 (18%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K++VA+ GY G+ G+Q D T+E L A+ G I N ++ K W
Sbjct: 9 IPKRRVAVLFGYSGSQLYGMQYIADASRFPTVESRLFDAIRGTGAIMAHNSDDIYKNGWN 68
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R+ RTDKGVH+L ++ LK+ + DL R+NA LP I+V++I + F
Sbjct: 69 RACRTDKGVHALGNVVSLKLNLTA----------DLVPRLNAQLPEGIRVWAIQSVNKQF 118
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQ----------------------------LTAAEID 226
+ C R Y Y+ P+ ++ +S+ L+ +D
Sbjct: 119 SGKTACGGRWYEYIFPSFILMGHSKFHRIRLNQSQKFDEDTNYEAYAKSLQVPLSQYRVD 178
Query: 227 SH-ISDFNAILNEFEGEHPFHNYTERSKY 254
+S + E+ G H FHN+T + ++
Sbjct: 179 QDTVSSLRQYMQEYLGTHNFHNFTTKKQF 207
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRAN 443
+ I I G+SFM+HQIRKM+ AV +P + L L + ++ +P PS LFL
Sbjct: 237 MSIRIRGQSFMIHQIRKMIAMAVIFHHYGIPPEQLNDILGE-TKQYIPKVPSSGLFLDFP 295
Query: 444 SFSVRTRP----GVTRPEMQT----MVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWT 495
F R G + + Q M + ++ L + + T E +KFLD +S T
Sbjct: 296 LFDSYNRKLVECGHSPIDFQDYSSEMFQLKQALLLPEIVRAVQTRHEYAKFLDHVES--T 353
Query: 496 EWIENL 501
EW++
Sbjct: 354 EWLDQF 359
>gi|159120024|ref|XP_001710229.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803]
gi|157438347|gb|EDO82555.1| Pseudouridylate synthase 1 [Giardia lamblia ATCC 50803]
Length = 467
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 188/455 (41%), Gaps = 80/455 (17%)
Query: 59 TLTRPTPNSSDDKWEPVRKK------KVALRVGYVGTDYRGLQMQRDEHS---LSTIEGE 109
++T+ S+D EP K+ +A+ +GYVGT Y G Q Q + + T+EGE
Sbjct: 14 SITKCGVGSADACEEPAPKQFRPKLVHIAVALGYVGTRYSGSQWQAPSATHPDIRTVEGE 73
Query: 110 LETALFKAGGIRESNYG-NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI 168
+ A+ AG + YG +++ I W R SRTD+ V + + P +
Sbjct: 74 IYAAIEAAGIL----YGRDIKSIGWTRCSRTDRSVSAAMAVFSFF----------GPGHL 119
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH 228
DL + + HLP++I +F + F + C R Y Y++P + +SQ A+E
Sbjct: 120 DLVQALQPHLPKDISIFGTVRVPPKFSAKMACTSRTYEYMMPLVFLLPSSQEEASEPCQD 179
Query: 229 ISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGR--VSKRAKASKDAVFSRVEESEGEE 286
+ F + L+ S Y + +T R S+ A + +
Sbjct: 180 VQAFFSYLD--------------SPYSAESTETVREACSRLYTAQRHDILD--------- 216
Query: 287 DGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIR 346
F ++++ + + S D ++M+ Q+ L + IR
Sbjct: 217 --FLRLDDELQKIRTQVRIRASHDSPAVIFDTMLQPFLQQ---------LVTTAFLAKIR 265
Query: 347 ARWLYETDEADKLSASHFRKIFSCSC-----------GKLEKSLGFGYVEISISGESFML 395
A + D ++S RKI SCS +K Y +++I G++F++
Sbjct: 266 AYHNFTEDNVQPSASS--RKILSCSVSLSAAFDSQTDAIKDKPAAELYTKVTICGQAFLM 323
Query: 396 HQIRKMVGTAVAVKRKLLPRDILTLSL---AKHSRIVLPLAPSEVLFLRANSFS-VRTRP 451
+QIR+M+G VAV R +P L + KH RI AP L L+ ++ + ++
Sbjct: 324 YQIRRMMGALVAVLRGWIPASFLYFAFQTRTKHLRI--STAPGSYLLLKQPNYEHLLSKK 381
Query: 452 GVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKF 486
T+ + + E E I + + F PE+ +
Sbjct: 382 DFTQHGV-FVSEDERIKDLAERFKVENIYPEIVRL 415
>gi|223948195|gb|ACN28181.1| unknown [Zea mays]
gi|413938174|gb|AFW72725.1| tRNA pseudouridine synthase family protein [Zea mays]
Length = 562
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 50 KRRKVAILLGYCGAGYQGMQKNP---GARTIEGDLEEALYQAGAVPEADRSAPRRYDWAR 106
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ + + SF+
Sbjct: 107 AARTDKGVSAAAQVVSGRFYVDPPGFID---------RLNAQLAPQIRAYGYVRVTNSFN 157
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
++ C+ R+Y YLLP + A + +H D A++ E S+
Sbjct: 158 AKKFCDRRRYLYLLP---------VFALDPSAH-PDREAVMASMGSGSELTKCLECSERG 207
Query: 256 RK-PHKTGRVSKRAKASKDAVFSRVEESEGEEDG 288
RK P GR K ++ V + VE S +E G
Sbjct: 208 RKIPGVMGREGKLPSPGQNGVDAPVEGSSHDESG 241
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G +V + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 378 RFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 437
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 438 DVNLNVPTAPEVGLYLDECMFT 459
>gi|413938173|gb|AFW72724.1| hypothetical protein ZEAMMB73_421497 [Zea mays]
Length = 565
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 50 KRRKVAILLGYCGAGYQGMQKNP---GARTIEGDLEEALYQAGAVPEADRSAPRRYDWAR 106
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ + + SF+
Sbjct: 107 AARTDKGVSAAAQVVSGRFYVDPPGFID---------RLNAQLAPQIRAYGYVRVTNSFN 157
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
++ C+ R+Y YLLP + A + +H D A++ E S+
Sbjct: 158 AKKFCDRRRYLYLLP---------VFALDPSAH-PDREAVMASMGSGSELTKCLECSERG 207
Query: 256 RK-PHKTGRVSKRAKASKDAVFSRVEESEGEEDG 288
RK P GR K ++ V + VE S +E G
Sbjct: 208 RKIPGVMGREGKLPSPGQNGVDAPVEGSSHDESG 241
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G +V + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 381 RFIISFAADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 440
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 441 DVNLNVPTAPEVGLYLDECMFT 462
>gi|350416759|ref|XP_003491089.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Bombus impatiens]
Length = 399
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 105/207 (50%), Gaps = 42/207 (20%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V++K + + YVG +Y G+Q+ R TIE L +AL KA I + + ++++I +
Sbjct: 47 VKRKNFVIMLSYVGKNYCGMQINRGR---KTIEESLLSALLKANFITKEQFEDVREIKFQ 103
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV ++ ++ L ++P K+D +N +LP++I+VF + R+F
Sbjct: 104 RAARTDKGVSAVRQVVSL--QLPDYVNKED---------INQYLPKDIRVFDVKRVTRTF 152
Query: 195 DPRRECNLRKYSYLLP--------AEVIGIN-----------SQLTAAEIDSH------- 228
+ + +C+ R Y Y+LP + V+ I+ QL+ + +
Sbjct: 153 NSKTKCDARTYRYVLPTFVLAPEDSNVLQIDEEEEVNEEQRLKQLSMIDGKPYHEFRLTP 212
Query: 229 --ISDFNAILNEFEGEHPFHNYTERSK 253
+ N IL EG H FHN+T ++K
Sbjct: 213 EMLDKLNEILKLLEGTHNFHNFTSKTK 239
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 368 FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSR 427
F C + ++ F +EI G+SFMLHQIRKMV + + R ++ DI+ + +
Sbjct: 252 FRCVETFIANNMEFAVLEIK--GQSFMLHQIRKMVSLVIGICRNIVTSDIIK-DVFSVEK 308
Query: 428 IVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEV 483
I +P+AP L L + + +E +E VD+FY L ++
Sbjct: 309 IDIPIAPGLGLSLHFVHYEYYNE-KFGKDGFHKTLEWQECNDDVDKFYKECILQDI 363
>gi|432886555|ref|XP_004074895.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oryzias latipes]
Length = 416
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 15/178 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVAL + Y G Y G+Q TIE +L +AL K+G I ++ ++K+++ R
Sbjct: 74 KKKVALLLAYSGKGYYGMQRNPGTSQFRTIEDDLVSALVKSGCIPGNHGDEMKKMSFQRC 133
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W + D+ +++N HLP I+V + + F+
Sbjct: 134 ARTDKGVSAAGQVVSLKV------WLIE----DVLEKINEHLPPQIRVLGLKRVTQGFNS 183
Query: 197 RRECNLRKYSYLLPAEVIGIN----SQLTAAEIDSH-ISDFNAILNEFEGEHPFHNYT 249
+ C+ R YSY+LP + A + + + N + + ++G H FHN+T
Sbjct: 184 KNNCDARTYSYMLPTVAFSQKDYDVGNIAAFRLQTETLQRVNRLFSLYKGTHNFHNFT 241
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I SCG+ + I++ G+SFMLHQIRKM+G +AV + ++ S +
Sbjct: 253 RYITEMSCGEPFIRNNCEFAVINVRGQSFMLHQIRKMIGLVIAVIKGYAQEKVIERSWGE 312
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 313 E-KVDVPKAPGLGLVLEMVHF 332
>gi|336368400|gb|EGN96743.1| hypothetical protein SERLA73DRAFT_140490 [Serpula lacrymans var.
lacrymans S7.3]
Length = 521
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 126/269 (46%), Gaps = 63/269 (23%)
Query: 61 TRPTPNSSDDKWEPVR--KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
TRP ++S+ + + R K++ AL +G+ GT G+Q+Q D + TIEG L AL +AG
Sbjct: 67 TRPADSASNTESKAPRLPKRQTALLIGFCGTGCNGMQIQPD---VRTIEGVLFGALVRAG 123
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVN 175
+ + N + K++ R++RTD GVH+ ++ +K+ IP G+ D+ R+N
Sbjct: 124 AVSQDNADDPVKVSLGRAARTDAGVHAAGNLVSMKLITTIP---------GVNDIVARIN 174
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA-------------EVIGINSQLTA 222
LP I+++ + Q SF+ R C+ RKY+Y P+ +G ++ T
Sbjct: 175 EELPPEIRLWGHVRVQNSFNARMSCDSRKYTYFFPSYLLIPPKPGSGLHRTLGQHADSTK 234
Query: 223 AEID----SH---------------------------ISDFNAILNEFEGEHPFHNYTER 251
A D SH I ++++EG H FHN+T
Sbjct: 235 APSDAIKPSHPFWGTGDTSTREDDLERKRKWRISADSIERLRLTVHKYEGTHNFHNFTVG 294
Query: 252 SKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ + ++ R K+ + S+ AV+ E
Sbjct: 295 REFGDRSNQ--RHMKKIEISEPAVYGGTE 321
>gi|452985072|gb|EME84829.1| hypothetical protein MYCFIDRAFT_135121 [Pseudocercospora fijiensis
CIRAD86]
Length = 592
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ E TIEG+L A KAG I ++N + +K R
Sbjct: 130 KRKVAVLIGYSGTGYKGMQISGTE---KTIEGDLFHAFIKAGAISKANAEDPKKTGLVRC 186
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ M+ LK+ + D D+ +++NA L I+V+ I + SF
Sbjct: 187 ARTDKGVHAAGNMVSLKLIVEDD---------DIVQKINAELSAQIRVWGIERTIGSFSC 237
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 238 YQACDSRWYEYLIPS 252
>gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Callithrix
jacchus]
Length = 428
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 84 KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 143
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D + +++N HLP +I++ + F+
Sbjct: 144 ARTDKGVSAAGQVVSLKV------WLID----GILEKINRHLPSHIRILGLKRVTGGFNS 193
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ +C+ R Y YLLP + E + N +L +EG H FHN+T
Sbjct: 194 KNKCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYEGTHNFHNFT 250
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 262 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESLLERSWGT 321
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 322 -EKVDVPKAPGLGLVLERVHF 341
>gi|443709138|gb|ELU03937.1| hypothetical protein CAPTEDRAFT_83969, partial [Capitella teleta]
Length = 303
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 90/180 (50%), Gaps = 26/180 (14%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ-KIAW 133
+RKKKVA+ + Y G Y G MQR+ +TIE +L AL KAG + + + K+ +
Sbjct: 3 LRKKKVAMFMCYSGKGYFG--MQRNP-GYATIERDLIDALAKAGVVTQDQAESPGPKMQF 59
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
R++RTDKGV + + LK+ + ++N HLP I++ I+P +
Sbjct: 60 QRAARTDKGVSAAGQVCSLKISV---------------FKINEHLPEQIRILGIIPVTKG 104
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
FD + CN R Y+Y++P T E+ N IL+ F G H FHNYT K
Sbjct: 105 FDSKNSCNGRTYTYMVPTYA------FTPVEMAIQ-RQVNIILSSFVGTHNFHNYTSGKK 157
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S G G + I+I G+SFMLHQIRKM+G +A+ R + +L + +
Sbjct: 165 RYIISFKMGDAFIVDGIEFAVITIRGQSFMLHQIRKMIGVTIAIMRGYSSKSVLIDAWGQ 224
Query: 425 HSRIVLPLAPSEVLFL 440
+ +P AP L L
Sbjct: 225 -DKCDIPRAPGLGLML 239
>gi|307214388|gb|EFN89459.1| tRNA pseudouridine synthase A [Harpegnathos saltator]
Length = 364
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 40/196 (20%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY+G +Y G MQR+ + TIE +L AL KA I + NL+ I + R++RTDKGV
Sbjct: 2 LGYLGKNYYG--MQRNP-GMKTIEEDLVNALLKANLITTEQFENLRTINFQRAARTDKGV 58
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
++ ++ LK+ PD +N LP I+VF I + F+ + +C+ R
Sbjct: 59 SAVRQIVSLKLPENPD-----------KTIINQFLPDVIRVFGIKRVTKGFNSKNQCDAR 107
Query: 204 KYSYLLPA--------------EVIGINSQLTAAE-------IDSHIS-----DFNAILN 237
Y Y++P+ E + IN ++ ID +S N+IL
Sbjct: 108 TYRYIIPSFTFAMEDQSLLKMGEEVDINERIKQISTIDGEPYIDYRLSIESLNRLNSILK 167
Query: 238 EFEGEHPFHNYTERSK 253
FEG H FHN+T ++K
Sbjct: 168 LFEGTHNFHNFTSKTK 183
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I + C S G +V + + G+SFMLHQIRKMV T +AV R ++P + + + K
Sbjct: 191 RYIINFHCVDTFVSKGIEFVVLEVKGQSFMLHQIRKMVATVIAVARNIIPEETINEAF-K 249
Query: 425 HSRIVLPLAPS 435
++ +P+APS
Sbjct: 250 TVKMEIPIAPS 260
>gi|395513517|ref|XP_003760970.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Sarcophilus harrisii]
Length = 410
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 30/185 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 65 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRC 124
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D ++ +++N+HLP +I++ + SF+
Sbjct: 125 ARTDKGVSAAGQIVSLKV------WLID----NILEKINSHLPSHIRILGLKRVTGSFNS 174
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------------FNAILNEFEGEHP 244
+ C+ R Y Y+LP A D I D N +L ++G H
Sbjct: 175 KNRCDARTYFYMLPT--------FAFAHKDHDIQDERYRLSPETLEKVNQLLAGYKGTHN 226
Query: 245 FHNYT 249
FHN+T
Sbjct: 227 FHNFT 231
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 17/153 (11%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C G + I I G+SFM+HQIRKM+G +AV + +P ++ S +
Sbjct: 243 RYIMEMHCEAPFMREGMEFAVIKIKGQSFMMHQIRKMIGLVIAVLKGYVPESVMERSWGE 302
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR----PGVTRPEMQTMVESEEILKMVDEFYTSVTL 480
++ +P AP L L F R G+ P VE EE + + E Y T+
Sbjct: 303 -EKVDIPKAPGLGLVLERVHFEQYNRRFGNDGLHEP--LDWVEEEEKMTVFKEQYIYPTI 359
Query: 481 PEVSKFLDATKSPWTEWIENLEKFTSIPNEQLD 513
+ + + T W+ ++PN D
Sbjct: 360 IKT----EMEEHSMTNWL------NTLPNHDFD 382
>gi|358369797|dbj|GAA86410.1| tRNA pseudouridine synthase [Aspergillus kawachii IFO 4308]
Length = 617
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL A AG I ++N + +K + R
Sbjct: 126 KKKVAVLLGYSGTGYKGMQLSETE---KTIEGELFAAFVAAGAISKANATDPKKSSLVRC 182
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + + D+ +++N L I+V+ IL + +SF
Sbjct: 183 ARTDKGVHAAGNIVSLKLIVEDE---------DIIQKINEKLSSQIRVWDILVTNKSFSS 233
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 234 YQLCDSRIYEYLIP 247
>gi|425766523|gb|EKV05132.1| TRNA pseudouridine synthase, putative [Penicillium digitatum Pd1]
gi|425775167|gb|EKV13449.1| TRNA pseudouridine synthase, putative [Penicillium digitatum PHI26]
Length = 583
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVAL +GY GT Y G+Q+ + TIEG+L TAL G + ++N + +K ++ R
Sbjct: 75 KKKVALLMGYSGTGYSGMQLNEQQR---TIEGDLFTALVNVGAVSKANAADPKKSSFVRC 131
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LKM + + D+ +++NA L I+V+ + +SF
Sbjct: 132 ARTDKGVHAAGNVVSLKMIVEDE---------DIIQKINAELSPQIRVWGYEVTSKSFSC 182
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YL+P+ +
Sbjct: 183 YQMCDSRVYEYLMPSHCL 200
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + + G+SFM+HQIRKMV A V R D +T + RI +P AP L
Sbjct: 395 GTEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPE-RIAIPKAPGLGLL 453
Query: 440 LRANSF 445
L F
Sbjct: 454 LERPIF 459
>gi|291415803|ref|XP_002724139.1| PREDICTED: pseudouridylate synthase 1-like, partial [Oryctolagus
cuniculus]
Length = 391
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 56 KRKIVLLLAYSGKGYHGMQRNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 115
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 116 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 165
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP + E + N +L ++G H FHN+T +
Sbjct: 166 KNKCDARTYFYMLPTFAFAHKDRDPQDETYRLSAETLQRVNRLLACYQGTHSFHNFTSQK 225
Query: 253 KYR 255
R
Sbjct: 226 GPR 228
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 234 RYILQMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGD 293
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 294 -EKVDVPKAPGLGLVLERVHF 313
>gi|170072176|ref|XP_001870114.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
gi|167868280|gb|EDS31663.1| tRNA pseudouridine synthase A [Culex quinquefasciatus]
Length = 431
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 18/184 (9%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V+K+K + +GY G +Y G MQR+ + TIE EL A+ K I + + Q+I +
Sbjct: 91 VKKRKCIILMGYSGVNYFG--MQRNPGT-KTIEEELLVAMLKNEWISDEAFKQPQQIQFQ 147
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV + ++ +K+ P +D+A +N LP I+VF++ + F
Sbjct: 148 RAARTDKGVSAATQVVSIKL----------PENLDIAG-LNKDLPEQIRVFAVKRVTKGF 196
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTE 250
+ + C+ R Y+Y LP + + + E + I L FEG FHN+T
Sbjct: 197 NSKSNCDARTYTYTLPTVAFAAHDEEVSVETYRAPEDRIQKVQETLKLFEGTKNFHNFTS 256
Query: 251 RSKY 254
R ++
Sbjct: 257 RKEF 260
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 16/170 (9%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
S F F C + + + I I G+SFMLHQIRKMVG +AV R L P + +
Sbjct: 264 SVKRFIMSFECEAPFVPEGTTVEFATIKIKGQSFMLHQIRKMVGLTLAVVRGLTPPETIM 323
Query: 420 LSLAKHSRIVLPLAPSEVLFL---RANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYT 476
+ + +R +P AP L L ++VR + E ++I E
Sbjct: 324 KAF-EETRYGVPTAPGLGLVLSRIHYEKYNVRYGADGCHETLDFEQEQDQIQSFFREHIA 382
Query: 477 SVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKR 526
S + + + EW+E L + P E+ +E W+ KR
Sbjct: 383 STIVK-----TELAERSMVEWLETLPLHSYEPREEGEE-------WRGKR 420
>gi|194043580|ref|XP_001928625.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 2
[Sus scrofa]
gi|311270525|ref|XP_003132902.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Sus
scrofa]
Length = 400
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 56 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 115
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 116 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 165
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP E + N +L ++G H FHN+T +
Sbjct: 166 KNKCDARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACYKGTHNFHNFTSQK 225
Query: 253 KYR 255
R
Sbjct: 226 GPR 228
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM HQIRKMVG VA+ + P +L S +
Sbjct: 234 RYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPESVLERSWGE 293
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
+++ +P AP L L F
Sbjct: 294 -AKVDVPKAPGLGLVLERVHF 313
>gi|281340805|gb|EFB16389.1| hypothetical protein PANDA_012338 [Ailuropoda melanoleuca]
Length = 359
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 37/204 (18%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++
Sbjct: 20 EPHRKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 79
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ +
Sbjct: 80 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPPHIRILGLKR 129
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------------FNAILN 237
F+ + +C+ R Y Y+LP A D + D N +L
Sbjct: 130 VTGGFNSKNKCDARTYFYMLPT--------FAFAHKDHDVQDERYRLSAETLRRVNGLLA 181
Query: 238 EFEGEHPFHNYTERSKYRRKPHKT 261
+ G H FHN+T ++ PH+
Sbjct: 182 CYRGTHNFHNFTS----QKGPHEA 201
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
AS R I C + G + I + G+SFM HQIRKMVG VAV + P +L
Sbjct: 201 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLER 260
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSF 445
S + +++ +P AP L L F
Sbjct: 261 SWGE-AKVDVPKAPGLGLVLERVHF 284
>gi|348550791|ref|XP_003461214.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Cavia
porcellus]
Length = 425
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++K+++ R
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRAGCIPENHGEDMRKMSFQRC 138
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D L ++N+HLP +I+V + F+
Sbjct: 139 ARTDKGVSAAGQVVSLKV------WLID----GLLDKINSHLPSHIRVLGLKRVTGGFNS 188
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTERS 252
+ C+ R Y Y+LP + E + N +L ++G H FHN+T +
Sbjct: 189 KNRCDARTYFYMLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQK 248
Query: 253 KYR 255
R
Sbjct: 249 GPR 251
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R + C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYVLEMYCEPPFEREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>gi|326527051|dbj|BAK04467.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 572
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/287 (28%), Positives = 126/287 (43%), Gaps = 39/287 (13%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ + Y G Y+G+Q TIEG+LE AL++AG + E++ + WAR
Sbjct: 46 KRRKVAIILAYCGAGYQGMQKN---PGARTIEGDLEEALYQAGAVPEADRAAPARYEWAR 102
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ F + SF
Sbjct: 103 AARTDKGVSAAAQVVSGRFYVDPPGFID---------RLNAKLAPQIRAFGYVRVTNSFS 153
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
++ C+ R+Y YLLP + A + +H D A+ E+ E S+
Sbjct: 154 AKKFCDRRRYVYLLP---------VLALDPSAH-PDREAVKASAGSENQLAKCVECSERG 203
Query: 256 RK-PHKTGRVSKRAKASKDAVFSRVEE----------SEGEEDGF---SKVEESDGEEDL 301
RK P GR K + ++ V E S GE F S DGE L
Sbjct: 204 RKVPDIMGREGKLPDSEENKVLDTSGEETVAAHGELRSNGEAKPFPTSSVTGTCDGETRL 263
Query: 302 GIGGEI---SSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVI 345
G I SSD+ QNS + + C + A + S ++
Sbjct: 264 GCDVMIDIASSDNGTEAQNSELESIGSGKCDIEPAEAVPTSASETIF 310
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + + G +V + G+SFMLHQIRKMVG AVAV R P I ++ K
Sbjct: 401 RYIISFTANSVVSLDGIDFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRK 460
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
R+ +P AP L L F+
Sbjct: 461 DIRLNVPTAPEVGLHLDECMFA 482
>gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries]
gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries]
Length = 400
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 56 KRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 115
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 116 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNS 165
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTERS 252
+ +C+ R Y Y+LP E + N +L ++G H FHN+T
Sbjct: 166 KNKCDARTYFYMLPTFAFAHKDHDLQDETYRLSAETLGRVNRLLACYKGTHNFHNFTS-- 223
Query: 253 KYRRKPHK 260
++ PH+
Sbjct: 224 --QKGPHE 229
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P +L + +++ +P AP L
Sbjct: 249 GMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYAPEGVLERCWGE-AKVDVPKAPGLGLV 307
Query: 440 LRANSF 445
L F
Sbjct: 308 LERVHF 313
>gi|242066426|ref|XP_002454502.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
gi|241934333|gb|EES07478.1| hypothetical protein SORBIDRAFT_04g032290 [Sorghum bicolor]
Length = 567
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ +GY G Y+G+Q TIEG+LE AL++AG + E++ ++ WAR
Sbjct: 50 KRRKVAILLGYCGAGYQGMQKN---PGARTIEGDLEEALYQAGAVPEADRAAPRRYDWAR 106
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
++RTDKGV + A ++ + + P + D R+NA L I+ + + SF
Sbjct: 107 AARTDKGVSAAAQVVSGRFYVDPPGFID---------RLNAQLASQIRAYGYVRVTNSFS 157
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YLLP
Sbjct: 158 AKKFCDRRRYLYLLP 172
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S ++ G +V + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 383 RFIISFGADRVVSLDGIDFVRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPETIYDVAFRK 442
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
+ +P AP L+L F+ + E +M E + +EF P ++
Sbjct: 443 DVNLNVPTAPEVGLYLDECMFTSYNKKWKDSHEAVSM---EPYYEEAEEFKVKYIFPHIA 499
Query: 485 KFLDATKSPWTEWIENL 501
++ + W+ +L
Sbjct: 500 A-MEHKEGAVALWLHSL 515
>gi|255935685|ref|XP_002558869.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583489|emb|CAP91502.1| Pc13g04330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 80/138 (57%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVAL +GY GT Y G+Q+ + TIEG+L TAL G + ++N + +K ++ R
Sbjct: 82 KKKVALLMGYSGTGYSGMQLNEQQR---TIEGDLFTALVNVGAVSKANAADPKKSSFVRC 138
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LKM + + D+ +++NA L I+V+ + +SF
Sbjct: 139 ARTDKGVHAAGNVVSLKMIVEDE---------DIIQKINAELSPQIRVWGYEVTSKSFSC 189
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YL+P+ +
Sbjct: 190 YQMCDSRVYEYLMPSHCL 207
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + + G+SFM+HQIRKMV A V R D +T + RI +P AP L
Sbjct: 361 GTEWLSLKVHGQSFMMHQIRKMVAMATMVVRSGCHPDRITETYGPE-RIAIPKAPGLGLL 419
Query: 440 L 440
L
Sbjct: 420 L 420
>gi|297693488|ref|XP_002824050.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Pongo
abelii]
Length = 424
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 80 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 139
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D ++ +++N+HLP +I++ + F+
Sbjct: 140 ARTDKGVSAAGQVVSLKV------WLID----NILEKINSHLPSHIRILGLKRVTGGFNS 189
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 190 KNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 246
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 273 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPECVLERSWGT-EKVDVPKAPGLGLV 331
Query: 440 LRANSF 445
L F
Sbjct: 332 LERVHF 337
>gi|366986575|ref|XP_003673054.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
gi|342298917|emb|CCC66663.1| hypothetical protein NCAS_0A01030 [Naumovozyma castellii CBS 4309]
Length = 543
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV + VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 80 KRKVVVMVGYCGTGYCGMQYNPPN---PTIEAALFKAFVEAGAISKDNSNDLKKSGFMRA 136
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LKM I +DP + +++N LP I+V+ I ++FD
Sbjct: 137 ARTDKGVHAGGNLVSLKMII------EDP---QIKEKINEKLPEGIRVWDIERVNKAFDC 187
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 188 RKLCSSRWYEYLLP 201
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKMV A V R P + +T + +I +P AP+ L L A
Sbjct: 352 WVSIKIHGQSFMLHQIRKMVSMATLVTRCGSPTERITQAYGVQ-KINIPKAPALGLLLEA 410
>gi|301775629|ref|XP_002923235.1| PREDICTED: tRNA pseudouridine synthase A-like [Ailuropoda
melanoleuca]
Length = 426
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 37/204 (18%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++
Sbjct: 81 EPHRKLPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMR 140
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ +
Sbjct: 141 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPPHIRILGLKR 190
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------------FNAILN 237
F+ + +C+ R Y Y+LP A D + D N +L
Sbjct: 191 VTGGFNSKNKCDARTYFYMLPT--------FAFAHKDHDVQDERYRLSAETLRRVNGLLA 242
Query: 238 EFEGEHPFHNYTERSKYRRKPHKT 261
+ G H FHN+T ++ PH+
Sbjct: 243 CYRGTHNFHNFTS----QKGPHEA 262
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
AS R I C + G + I + G+SFM HQIRKMVG VAV + P +L
Sbjct: 262 ASARRYILDMFCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAVVKGYAPESVLER 321
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSF 445
S + +++ +P AP L L F
Sbjct: 322 SWGE-AKVDVPKAPGLGLVLERVHF 345
>gi|365990127|ref|XP_003671893.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
gi|343770667|emb|CCD26650.1| hypothetical protein NDAI_0I00810 [Naumovozyma dairenensis CBS 421]
Length = 328
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 27/212 (12%)
Query: 55 SVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL 114
S+ TL TP ++++ + K++VA+ +GY GT Y G+Q TIE L AL
Sbjct: 9 SIKKTLLGTTP-TTNEVIRKIPKRRVAIMLGYRGTGYYGMQYNPPRE---TIESTLFNAL 64
Query: 115 FKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKR 173
I E N ++ K R++RTDKGVH+ +I LK+ + DP ++ L +
Sbjct: 65 VSVDAISEKNSLDISKNGLMRTARTDKGVHAAGNLISLKVLM------KDPNTLNELKTK 118
Query: 174 VNAHLPRN---IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----- 225
+N L + +K++ I +SF+ R+ C+ R Y YLLPA V +++ +T +
Sbjct: 119 LNGVLSESGSGLKIWDIRRINKSFNCRKVCSSRWYEYLLPACV--LDNTVTRGPLNLDIL 176
Query: 226 ------DSHISDFNAILNEFEGEHPFHNYTER 251
D+ ++ F + N++ G H FHN+T +
Sbjct: 177 KKYRVSDTILNKFQNVSNQYIGSHNFHNFTVK 208
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + + G+SFM++QIRKM+ A+ + R P + A ++ +P AP+ L L
Sbjct: 236 WISVRLHGQSFMMNQIRKMLSLAIYLTRYDYPSSTVNSLFATDIKVYIPNAPASGLLL 293
>gi|402074306|gb|EJT69835.1| tRNA pseudouridine synthase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 694
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 39/174 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ H TIEG+L A +AG I ++N + +K++ R
Sbjct: 128 KRKVAVLIGYAGTGYKGMQIN---HQEKTIEGDLFRAFVEAGAISKANASDPRKVSLMRC 184
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWK----------------------DDPYGID---- 169
+RTDKGVH+ + ++ LK+ + P+A K D +D
Sbjct: 185 ARTDKGVHAASNVVSLKVILDEPEAAKTAEASTEEGEGTKTNSAETAGDDQNLEVDKAGE 244
Query: 170 ---------LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
L R+N HLP I+++ I+ + +F + C+ R Y YL+P+ V+
Sbjct: 245 AGDMTAEEALTARINKHLPDQIRIWGIIRTNNAFSSHQACDSRWYEYLMPSHVL 298
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 383 YVEISISGESFMLHQIRKMVGTAV-AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
++ + + G+SFM+HQIRKMV AV V+ P D + S RI +P AP L L
Sbjct: 529 WLSLKVHGQSFMMHQIRKMVAMAVLLVRSGAPPADRIKASYGP-KRISIPKAPGLGLLLE 587
Query: 442 A---NSFSVRTRPGVTRP---------EMQT---------MVESEEILKMVDEFYTSVTL 480
++S R + RP E+Q+ M + EE + FY +
Sbjct: 588 RPVFENYSKRAVQSLDRPPLNFDKFEAEIQSFKDKHIYKRMWDVEERANVFHTFYNQLDS 647
Query: 481 PEVSKFLDATKSPWTEWIENLEKFTSIP 508
FL T + + E EK +P
Sbjct: 648 FATDYFLWVTANGFDVAYERKEKGDRVP 675
>gi|357136941|ref|XP_003570061.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Brachypodium distachyon]
Length = 553
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 19/155 (12%)
Query: 63 PTPNS----SDDKWEPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF 115
P P S + D +P R+ +KVA+ + Y G Y+G+Q TIEG+LE AL+
Sbjct: 26 PEPTSPSAAAADPGQPRRRYKRRKVAILLAYCGAGYQGMQKN---PGARTIEGDLEEALY 82
Query: 116 KAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
+AG + E++ ++ WAR++RTDKGV + A ++ + + P + D R+N
Sbjct: 83 QAGAVPEADRAAPRRYEWARAARTDKGVSAAAQVVSGRFYVDPPGFVD---------RLN 133
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
A L I+ F + SF ++ C+ R+Y YLLP
Sbjct: 134 AQLAPQIRAFGYVRVTNSFSAKKFCDRRRYVYLLP 168
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ + G +V + G+SFMLHQIRKMVG AVAV R P I ++ K
Sbjct: 382 RFIISFTANRVVRLDGIDFVRCEVVGQSFMLHQIRKMVGLAVAVMRNCAPESIYDVAFRK 441
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
R+ +P AP L L F+
Sbjct: 442 DIRLNVPTAPEVGLHLDECMFT 463
>gi|356500639|ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Glycine max]
Length = 548
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ Y G Y+G+Q TIEG+LE AL+ +G + E + G ++ WAR
Sbjct: 48 KRRKVAIFFAYCGVGYQGMQKN---PGAKTIEGDLEEALYVSGAVPEQDRGVPKRYDWAR 104
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
S+RTDKGV ++ ++ + I DP G L R+N++LP I++F SF+
Sbjct: 105 SARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNSNLPSQIRIFGYKRVTASFN 155
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YL+P
Sbjct: 156 AKKFCDRRRYVYLIP 170
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ + G+SFMLHQIRKM+G AVA+ R P ++ +L + I +P AP L+
Sbjct: 367 GVEFVKCEVVGQSFMLHQIRKMIGLAVAIMRNCAPESLIDEALQQDVNINVPTAPEVGLY 426
Query: 440 LRANSFS 446
L F+
Sbjct: 427 LDECFFT 433
>gi|121698285|ref|XP_001267772.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
gi|119395914|gb|EAW06346.1| tRNA pseudouridine synthase, putative [Aspergillus clavatus NRRL 1]
Length = 568
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 78 KKKVAVLIGYAGTGYHGMQLSDKE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 134
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + +DP D+ K++N L I+V+ + + + F
Sbjct: 135 ARTDKGVHAAGNVVSLKLIV------EDP---DIVKKINEQLCPQIRVWDVQVTNKGFSC 185
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 186 YQMCDSRVYEYLIPS 200
>gi|221052120|ref|XP_002257636.1| pseudouridylate synthase 1 [Plasmodium knowlesi strain H]
gi|193807466|emb|CAQ37972.1| pseudouridylate synthase 1, putative [Plasmodium knowlesi strain H]
Length = 524
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 121/516 (23%), Positives = 194/516 (37%), Gaps = 125/516 (24%)
Query: 40 SCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRD 99
+C +C +S+P H PN KK AL +GYVG+ Y G Q Q
Sbjct: 28 TCEKCVTHERDESAPRERH------PNL----------KKYALCIGYVGSRYHGCQGQGK 71
Query: 100 EHSLSTIEGELETALFKAGGIRESNYGNLQK---IAWARSSRTDKGVHSLATMICLKME- 155
+ TIE E+E L K G+ G +K +RS+RTD GVH+L + +++
Sbjct: 72 D--CMTIENEIERTLIKMNGV--GRRGGCKKDFNFCQSRSARTDLGVHALYNVFVYQVDL 127
Query: 156 ----------------IPPDAWKDDPYGID-----------------------------L 170
+ D+ D ID L
Sbjct: 128 NCGQAGGAVGVVTENVVATDSLATDSLAIDVVANGDAAHNADATSTEVRTHNATTQSTAL 187
Query: 171 AKR----------VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
A+R +N HLP +I+ F + +SFD R+ C+ R Y YL P V+ S++
Sbjct: 188 AERKEKEKKFVHLLNEHLPEDIRCFGMHRVTKSFDARKFCSFRLYEYLFPVYVL---SEV 244
Query: 221 TAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK---PHKTGRVSKRAKASKDAVFS 277
D + F+ L +G E K R++ K K +
Sbjct: 245 VVR--DEYRDVFDEALRVMDGR------VEELKRRKRDAVDQKGENEVADQKGENEVADQ 296
Query: 278 RVEESEGEEDGFSKVEESDGEEDLG-------IGGEISSD--------DEKANQNS---- 318
+ E ++ G ++V + GE ++ + + D DE A QN+
Sbjct: 297 KGENEVADQKGENEVADQKGENEVADQKGENKVADQKGEDESAGKNCADEAAKQNTWDDI 356
Query: 319 MVSGVHQEDCCNQHANGLKD--QNSSSVIRARWLYETDEADKLSASHFR--KIFSCSCGK 374
+ +ED + N + QN + + +K+ + FR K S
Sbjct: 357 LTVKEQKEDLTEEELNAFFEIVQNYAGYHNFHCFTK----NKVDQTTFRFIKYLDVSTVN 412
Query: 375 LEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAP 434
L + +V + I G+SF++HQIRKM+ +V RK + + L + + L P
Sbjct: 413 L---FNYNFVSVKILGQSFLMHQIRKMLTLSVETFRKATSVNSIYYCLKSGEYVPISLFP 469
Query: 435 SEVLFLRANSFSVRTRPGVTRPEMQTMV--ESEEIL 468
+E L L F+ P+ + E+EEIL
Sbjct: 470 AEGLMLICPYFNAYNEKVCNPPQSPPICFEETEEIL 505
>gi|403215359|emb|CCK69858.1| hypothetical protein KNAG_0D01060 [Kazachstania naganishii CBS
8797]
Length = 550
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 92/170 (54%), Gaps = 16/170 (9%)
Query: 73 EPVR--KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK 130
+PVR K+KVA+ VGY GT Y G+Q TIE L A +G I + N +L+K
Sbjct: 69 KPVRLPKRKVAVMVGYCGTGYCGMQYNPPN---PTIEATLFKAFCDSGAISQDNANDLKK 125
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+ R++RTDKGVH+ +I +K+ I +DP + +++N LP I+V+ I
Sbjct: 126 NGFMRAARTDKGVHAGGNLISVKLII------EDP---TIKQKINECLPEGIRVWDINRV 176
Query: 191 QRSFDPRRECNLRKYSYLLPA-EVIGIN-SQLTAAEIDSHISDFNAILNE 238
++FD R+ C+ R Y YLLP +IG + +I+ D +L+E
Sbjct: 177 NKAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYNDIEQSKKDLPGVLDE 226
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A + R P + ++ + +I +P AP+ L L +
Sbjct: 347 WVSIKIHGQSFMLHQIRKMISMATLITRCGTPVERISQAYGPQ-KINIPKAPALGLLLES 405
>gi|407917586|gb|EKG10890.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 706
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV + +GY G+ Y+G+Q+ + TIEG+L TA KAG I ++N + +K A R
Sbjct: 127 KRKVVVMIGYSGSGYKGMQIMPNHR---TIEGDLFTAFVKAGAISKANADDPKKSALVRC 183
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP D+ +++N+HL I+V+ I + SF
Sbjct: 184 ARTDKGVHAAGNVISLKLII------EDP---DIVEKINSHLSPQIRVWGIERTTGSFSA 234
Query: 197 RRECNLRKYSYLLP 210
+ + R Y YL+P
Sbjct: 235 YQAVDSRWYEYLIP 248
>gi|355714583|gb|AES05050.1| pseudouridylate synthase 1 [Mustela putorius furo]
Length = 353
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 30/185 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 24 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 83
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F+
Sbjct: 84 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPPHIRILGLKRVTGGFNS 133
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------------FNAILNEFEGEHP 244
+ +C+ R Y Y+LP A D + D N +L ++G H
Sbjct: 134 KNKCDARTYFYMLPT--------FAFAHKDHDVQDESYRLSTETLLRVNRLLACYKGTHN 185
Query: 245 FHNYT 249
FHN+T
Sbjct: 186 FHNFT 190
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
AS R + C + G + I + G+SFM HQIRKMVG VA+ + P +L
Sbjct: 198 ASARRYVLDMFCEEPFVRDGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLER 257
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSF 445
S + +++ +P AP L L F
Sbjct: 258 SWGE-AKVDVPKAPGLGLVLERVHF 281
>gi|378731692|gb|EHY58151.1| tRNA pseudouridine synthase A, variant [Exophiala dermatitidis
NIH/UT8656]
Length = 698
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ H TIEG+L A AG I ++N + +K ++ R
Sbjct: 141 KKKVAVLIGYAGTGYHGMQLT---HDKKTIEGDLFKAFVAAGAISKANADDPKKSSFVRC 197
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP D+ K++N +L I+V+ + SF
Sbjct: 198 ARTDKGVHAAGNVISLKLII------EDP---DIVKKINENLTPQIRVWGFERTNNSFSS 248
Query: 197 RRECNLRKYSYLLPA 211
+ + R Y YL+P+
Sbjct: 249 YQAVDSRIYEYLIPS 263
>gi|18394855|ref|NP_564112.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens
gi|4455035 and contains tRNA pseudoridine synthase
PF|01416 domain. ESTs gb|T76494, gb|W43440 come from
this gene [Arabidopsis thaliana]
gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana]
gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana]
gi|332191845|gb|AEE29966.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 549
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 12/162 (7%)
Query: 49 SSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEG 108
S+ + S +T N ++ + R++KVA+ + G Y+G+Q TIEG
Sbjct: 29 STTGQETDSSAVTTGGSNVAERRAPKYRRRKVAIVFAFCGVGYQGMQKN---PGAKTIEG 85
Query: 109 ELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI 168
ELE ALF AG + +++ + WARS+RTDKGV ++ ++ + + P +
Sbjct: 86 ELEEALFHAGAVPDADRNKPRNYEWARSARTDKGVSAVGQVVSGRFYVDPPGF------- 138
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+R+N+ LP I+VF SF ++ C+ R+Y YL+P
Sbjct: 139 --VERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVYLIP 178
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + + G +V+ + G+SFMLHQIRKM+G AVA+ R P ++ S K
Sbjct: 350 RYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLAVAIMRNYAPESLIEASFKK 409
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEI 467
RI +P+AP L+L F+ + E +M E +E+
Sbjct: 410 DVRINVPMAPEVGLYLDECFFTSYNKRFKGSHEEVSMEEYKEV 452
>gi|71664275|ref|XP_819120.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884407|gb|EAN97269.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 621
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN- 127
D++ + K+KVA+ GYVG Y GLQ T+E EL AL + G I + NY
Sbjct: 78 DEQARKLPKRKVAIIFGYVGERYCGLQWNHLP-GYPTVEEELLRALHRTGMISKENYEQE 136
Query: 128 --LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKV 184
QK+ W R+SRTDKGVH+L +I L + +P Y A+R+ LP +I V
Sbjct: 137 KVQQKLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVV 196
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ I+P RSF+ C R Y Y LP
Sbjct: 197 YEIVPVTRSFNAYMLCGARTYEYYLP 222
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 363 HFRKIFS-CSCGKLEKSL--GFGYVEISISGESFMLHQIRKMVGTAVAV-KRKLLPRDIL 418
H + ++ S G +E S+ G V I + G+SFML+QIRKM+G +++ L P+ +
Sbjct: 461 HMQHVYGDFSSGGVEGSVKTGLEVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLR 520
Query: 419 TLSLAKHSRIVLPLAPSEVLFLRANSF 445
L K R +P+AP+ LFL F
Sbjct: 521 DHLLNKAVRCGVPMAPANGLFLSYLDF 547
>gi|440634959|gb|ELR04878.1| hypothetical protein GMDG_07103 [Geomyces destructans 20631-21]
Length = 630
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY G+ Y+G+Q+ E TIEG+L +A AG I ++N + +K + R
Sbjct: 113 KRKVAVLIGYAGSGYKGMQINTTE---KTIEGDLFSAFVTAGAISKANADDPKKSSLVRC 169
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I D GI +++NA LP I+V+ I + SF
Sbjct: 170 ARTDKGVHAAGNVISLKLII-------DEEGI--VEKINAALPPQIRVWGIERTNASFSC 220
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 221 YQTCDSRWYEYLIP 234
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV V R P + + S H +I +P AP L L
Sbjct: 462 WLSLKVHGQSFMMHQIRKMVAMVALVVRCGTPIERINESYQNH-KISIPKAPGLGLLLER 520
Query: 443 NSF 445
F
Sbjct: 521 PVF 523
>gi|134080163|emb|CAK46143.1| unnamed protein product [Aspergillus niger]
Length = 567
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%), Gaps = 12/133 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL A AG I ++N + +K + R
Sbjct: 118 KKKVAVLLGYSGTGYKGMQLSETE---KTIEGELFAAFVAAGAISKANATDPKKSSLVRC 174
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ + D D+ +++N L I+V+ IL + +SF
Sbjct: 175 ARTDKGVHAAGNIVSLKLIVEDD---------DIIQKINEKLSSQIRVWDILVTNKSFSS 225
Query: 197 RRECNLRKYSYLL 209
+ C+ R Y YL+
Sbjct: 226 YQLCDSRIYEYLI 238
>gi|297850446|ref|XP_002893104.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338946|gb|EFH69363.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 557
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 12/154 (7%)
Query: 57 SHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFK 116
S +T N ++ + R++KVA+ + G Y+G+Q TIEGELE ALF
Sbjct: 37 SSAVTAGGSNVAERRAPKYRRRKVAIVFAFCGVGYQGMQKN---PGAKTIEGELEEALFH 93
Query: 117 AGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNA 176
AG + +++ + WARS+RTDKGV ++ ++ + + P + +R+N+
Sbjct: 94 AGAVPDADRNKPRNYEWARSARTDKGVSAVGQVVSGRFYVDPPGF---------VERLNS 144
Query: 177 HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
LP I+VF SF ++ C+ R+Y YL+P
Sbjct: 145 KLPDQIRVFGYKRVAPSFSSKKLCDRRRYVYLIP 178
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + + G +V+ + G+SFMLHQIRKM+G AVAV R P ++ + K
Sbjct: 348 RYILSFNANTVINLDGKDFVKCEVVGQSFMLHQIRKMIGLAVAVMRNYAPESLIETAFKK 407
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
RI +P+AP L+L F+
Sbjct: 408 DVRINVPMAPEVGLYLDECFFT 429
>gi|378731693|gb|EHY58152.1| tRNA pseudouridine synthase A [Exophiala dermatitidis NIH/UT8656]
Length = 700
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ H TIEG+L A AG I ++N + +K ++ R
Sbjct: 143 KKKVAVLIGYAGTGYHGMQLT---HDKKTIEGDLFKAFVAAGAISKANADDPKKSSFVRC 199
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP D+ K++N +L I+V+ + SF
Sbjct: 200 ARTDKGVHAAGNVISLKLII------EDP---DIVKKINENLTPQIRVWGFERTNNSFSS 250
Query: 197 RRECNLRKYSYLLPA 211
+ + R Y YL+P+
Sbjct: 251 YQAVDSRIYEYLIPS 265
>gi|407850015|gb|EKG04565.1| hypothetical protein TCSYLVIO_004376 [Trypanosoma cruzi]
Length = 573
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN- 127
D++ + K+KVA+ GYVG Y GLQ T+E EL AL + G I + NY
Sbjct: 30 DEQARKLPKRKVAIIFGYVGERYCGLQWNHLP-GYPTVEEELLRALHRTGMISKENYEQE 88
Query: 128 --LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKV 184
QK+ W R+SRTDKGVH+L +I L + +P Y A+R+ LP +I V
Sbjct: 89 KVQQKLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIVV 148
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ I+P RSF+ C R Y Y LP
Sbjct: 149 YEIVPVTRSFNAYMLCGARTYEYYLP 174
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAV-KRKLLPRDILTLSLAKHSRIVLPLAPSEVL 438
G V I + G+SFML+QIRKM+G +++ L P+ + L K R +P+AP+ L
Sbjct: 433 GLEVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLRDHLLNKAVRCGVPMAPANGL 492
Query: 439 FLRANSF 445
FL F
Sbjct: 493 FLSYLDF 499
>gi|407410310|gb|EKF32791.1| hypothetical protein MOQ_003354 [Trypanosoma cruzi marinkellei]
Length = 574
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 92/176 (52%), Gaps = 6/176 (3%)
Query: 39 LSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQR 98
+SC R A+++ +S+ + + D++ + K+KVA+ GYVG Y GLQ
Sbjct: 1 MSC-RMNAAAAVESNNVGNRQEEEEERETVDEQARKLPKRKVAIIFGYVGERYCGLQWNH 59
Query: 99 DEHSLSTIEGELETALFKAGGIRESNYGN---LQKIAWARSSRTDKGVHSLATMICLKME 155
T+E EL AL++ G I + NY QK+ W R+SRTDKGVH+L +I + +
Sbjct: 60 LPE-YPTVEEELLRALYRTGMISKENYEQEKVQQKLNWERASRTDKGVHALRNVISVNVM 118
Query: 156 IPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+P Y A+R + + LP +I V+ I+P RSF+ C R Y Y LP
Sbjct: 119 LPYAKGSTTEYDPQEARRLLMSVLPHDIVVYEIVPVTRSFNAYMLCGARTYEYYLP 174
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 363 HFRKIFS--CSCGKLEKSL--GFGYVEISISGESFMLHQIRKMVGTAVAV-KRKLLPRDI 417
H +++ SCG +E S+ G V I + G+SFML+QIRKM+G +A+ L P +
Sbjct: 413 HMLRVYGDPSSCGGVEGSVKTGLEVVRIELHGQSFMLNQIRKMIGAVIAICAAGLSPEYL 472
Query: 418 LTLSLAKHSRIVLPLAPSEVLFL 440
L K R +P+AP+ LFL
Sbjct: 473 RDHLLNKAVRCGVPMAPANGLFL 495
>gi|189209550|ref|XP_001941107.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977200|gb|EDU43826.1| tRNA pseudouridine synthase 1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 595
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L A AG I ++N + +K++ R
Sbjct: 97 KRKVAVMIGYSGTGYKGMQI---DNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRC 153
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I + D+ ++N+HL I+V+ I + SF
Sbjct: 154 ARTDKGVHAAGNVVSLKLIIEDE---------DIVDKINSHLTDQIRVWGIQRTVGSFSC 204
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 205 YQACDSRWYEYLIP 218
>gi|156538138|ref|XP_001608257.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nasonia vitripennis]
Length = 437
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 104/203 (51%), Gaps = 35/203 (17%)
Query: 62 RPTPNSSD-----DKWEP-----VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELE 111
RP N ++ K EP +++K A+ +GY G +Y G MQR+ +TIE EL
Sbjct: 46 RPLDNDAEIEAKKQKIEPQPFIRIKRKNYAMMLGYCGKNYYG--MQRNP-GFNTIEEELI 102
Query: 112 TALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
A+ KA I + +Q I + R++RTDKGV ++ ++ LK+ P D KD
Sbjct: 103 KAMLKADLITSEAFETIQNINFQRAARTDKGVSAVRQVVSLKL--PEDPSKDS------- 153
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD 231
+N LP +I+VF+I + F+ + +C+ R YSY +P + + E+ +S+
Sbjct: 154 --INETLPEDIRVFAIKRVTKGFNSKSQCDARTYSYTMPTFALAPEN----LELFQEMSE 207
Query: 232 FNAI------LNEFEGEHPFHNY 248
+N + L+ +G+ PFH Y
Sbjct: 208 YNDVEKRMEQLSTIDGK-PFHEY 229
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFMLHQIRKMV + V R ++PR+ ++ + ++ + +APS L L
Sbjct: 286 FITLKVKGQSFMLHQIRKMVAMVIGVIRNIVPREEFEKTVFEQAKYDITIAPSLGLMLNI 345
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLE 502
+ + M ++ E + + EF + L V + + P EW+ NL+
Sbjct: 346 VHYDYYNK-RYGSDGMHDTLDWAECDQEIAEFEKNFILKHVFD-TELKEKPMLEWLANLQ 403
>gi|46124417|ref|XP_386762.1| hypothetical protein FG06586.1 [Gibberella zeae PH-1]
Length = 602
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ +E TIE +L A AG I ++N + +K + R
Sbjct: 106 KRKVAVMIGYAGTGYKGMQVNGNE---KTIEADLFKAFVAAGAISKANADDPKKSSLVRC 162
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NA LP I+++ + + +F
Sbjct: 163 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINAELPEQIRIWGLQRTNNAFSC 213
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 214 YQTCDSRWYEYLMPS 228
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + + G+SFM+HQIRKMVG A + R P + + S ++ ++ +P AP L L
Sbjct: 436 WLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESY-QNQKMAIPKAPGLGLLL 492
>gi|408399081|gb|EKJ78206.1| hypothetical protein FPSE_01667 [Fusarium pseudograminearum CS3096]
Length = 602
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ +E TIE +L A AG I ++N + +K + R
Sbjct: 106 KRKVAVMIGYAGTGYKGMQVNGNE---KTIEADLFKAFVAAGAISKANADDPKKSSLVRC 162
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NA LP I+++ + + +F
Sbjct: 163 ARTDKGVHAAGNVISLKLIIEDE---------DIVDKINAELPEQIRIWGLQRTNNAFSC 213
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 214 YQTCDSRWYEYLMPS 228
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + + G+SFM+HQIRKMVG A + R P + + S ++ ++ +P AP L L
Sbjct: 436 WLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPMERIKESY-QNQKMAIPKAPGLGLLL 492
>gi|427789583|gb|JAA60243.1| Putative trna pseudouridine synthase a mitochondrial [Rhipicephalus
pulchellus]
Length = 442
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 97/182 (53%), Gaps = 13/182 (7%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ KK+AL + Y G DY G MQR+ + TIE +L TAL+K I+ + Q + +
Sbjct: 67 AKAKKMALCMCYSGKDYLG--MQRNPGT-KTIEEDLLTALYKGQLIQREHIEIPQNVKFQ 123
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV ++ ++ LK+ P + D+ + R+N+HL I+V I + R F
Sbjct: 124 RAARTDKGVSAVRQVVSLKL--PTNISIDE-----MVTRINSHLVDQIRVIDIKRTTRGF 176
Query: 195 DPRRECNLRKYSYLLPAEVI---GINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
+ + C+ R YSY+LP+ G+ + I + N +L ++G H +HN+T
Sbjct: 177 NCKNNCDSRTYSYMLPSFSFAPPGVTPDESYRITSERIEEVNKVLALYKGCHNYHNFTSG 236
Query: 252 SK 253
K
Sbjct: 237 KK 238
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S R + S CG+ +++I I G+SFMLHQIRKMVG +A+ R + + +
Sbjct: 243 SAMRFMISAECGQPFIQGDIEFLQIRIKGQSFMLHQIRKMVGLVIAIMRGHTDQSTIRRA 302
Query: 422 LAKHSRIVLPLAPSEVLFL 440
R+ +P+AP L L
Sbjct: 303 WGP-ERLDIPIAPPLGLML 320
>gi|361129503|gb|EHL01409.1| putative tRNA pseudouridine synthase 1 [Glarea lozoyensis 74030]
Length = 747
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY G+ Y+G+Q+ E TIEG+L A AG I ++N + +K R
Sbjct: 129 KRKVAVLIGYAGSGYKGMQINGTE---KTIEGDLFKAFVAAGAISKANADDPKKSTLVRC 185
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + D D+ +++NA LP I+V+ + SF
Sbjct: 186 ARTDKGVHAAGNVISLKLIVEED---------DIVQKINAALPPQIRVWGYERTNGSFSC 236
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 237 YQSCDSRWYEYLIP 250
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFM+HQIRKMV A V R +++ S + + I +P APS L L
Sbjct: 583 WLSLKVHGQSFMMHQIRKMVAMASMVVRCGSTAEVIRDSYGR-APISIPKAPSLGLLLER 641
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEF 474
F+ V++ + ++ ++ K +DEF
Sbjct: 642 PVFNSYNTQAVSKFNREK-IDFDKYQKEMDEF 672
>gi|330924858|ref|XP_003300809.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
gi|311324870|gb|EFQ91095.1| hypothetical protein PTT_12161 [Pyrenophora teres f. teres 0-1]
Length = 631
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 79/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L A AG I ++N + +K++ R
Sbjct: 106 KRKVAVMIGYSGTGYKGMQI---DNKQKTIEGDLFNAFVAAGAISKANAVDPKKVSLVRC 162
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I + D+ ++N+HL I+V+ I + SF
Sbjct: 163 ARTDKGVHAAGNVVSLKLIIEDE---------DIVDKINSHLTDQIRVWGIQRTVGSFSC 213
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 214 YQACDSRWYEYLIP 227
>gi|302893420|ref|XP_003045591.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256726517|gb|EEU39878.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 616
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ +E TIE +L A AG I ++N + +K + R
Sbjct: 113 KRKVAVMIGYAGTGYKGMQVNGNE---KTIEADLFKAFVAAGAISKANADDPKKSSLVRC 169
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I + D+ ++NA LP I+++ I + +F
Sbjct: 170 ARTDKGVHAAGNVISLKLIIEDE---------DIIDKINAELPEQIRIWGIQRTNNAFSC 220
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 221 YQTCDSRWYEYLMPS 235
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + + G+SFM+HQIRKMVG A + R P + S ++ ++ +P AP L L
Sbjct: 451 WLSLKVHGQSFMMHQIRKMVGLASLIVRCGTPLKRMDESY-QNQKMAIPKAPGLGLLL 507
>gi|71413504|ref|XP_808888.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873184|gb|EAN87037.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 634
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN- 127
D++ + K+KVA+ GYVG Y GLQ T+E EL AL + G I + NY
Sbjct: 91 DEQARKLPKRKVAIIFGYVGERYCGLQWNHLP-GYPTVEEELLRALHRTGMISKENYEQE 149
Query: 128 --LQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKV 184
QK+ W R+SRTDKGVH+L +I L + +P Y A+R+ LP +I V
Sbjct: 150 KVQQKLNWERASRTDKGVHALRNVISLNVMLPYAKGSTTEYDPQEARRILMTVLPHDIIV 209
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ I+P RSF+ C R Y Y LP
Sbjct: 210 YEIVPVTRSFNAYMLCGARTYEYYLP 235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 4/87 (4%)
Query: 363 HFRKIFS-CSCGKLEKSL--GFGYVEISISGESFMLHQIRKMVGTAVAV-KRKLLPRDIL 418
H + ++ SCG +E S+ G V I + G+SFML+QIRKM+G +++ L P+ +
Sbjct: 474 HMQHVYGDFSCGGVEGSVKTGLEVVRIELHGQSFMLNQIRKMIGAVISICAAGLSPQYLR 533
Query: 419 TLSLAKHSRIVLPLAPSEVLFLRANSF 445
L K R +P+AP+ LFL F
Sbjct: 534 DHLLNKAVRCGVPMAPANGLFLSYLDF 560
>gi|328850113|gb|EGF99282.1| hypothetical protein MELLADRAFT_45767 [Melampsora larici-populina
98AG31]
Length = 615
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 85/164 (51%), Gaps = 22/164 (13%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P+ S +K P K+KVA+ +GY G Y+G Q+ + TIEGE+ A KAG + E N
Sbjct: 117 PSGSKEKRLP--KRKVAVLLGYYGKGYQGSQVNP---GMKTIEGEVFKAFVKAGCVSEDN 171
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD---------------DP--YG 167
+ K+ R++RTD VH+ +ICLK+ + P + K+ DP +
Sbjct: 172 SAHPNKVGLQRAARTDANVHAGCNLICLKLILDPPSLKESSDITAESSETKTCGDPEHHS 231
Query: 168 IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
+ L K +N+ LP I+++ + Q SF R C+ R Y Y LP
Sbjct: 232 LPLMKHINSFLPEEIRLWGLERVQNSFHARTLCDSRTYEYSLPT 275
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + G+SFMLHQIRKM+G + + R P ++ L R+ +P AP L L
Sbjct: 414 WISVKFYGQSFMLHQIRKMIGLIILLCRTRTPCTLIP-ELYGPVRVRIPKAPGLGLILHH 472
Query: 443 NSF 445
F
Sbjct: 473 PHF 475
>gi|449303254|gb|EMC99262.1| hypothetical protein BAUCODRAFT_129467 [Baudoinia compniacensis
UAMH 10762]
Length = 708
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ E TIEG+L A +AG I ++N + +K++ R
Sbjct: 146 KRKVAVLIGYSGTGYKGMQITPSER---TIEGDLFAAFIRAGAISKANAEDPKKVSLVRC 202
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ MI LK+ + + D+ +R+N L I+V+ + + SF
Sbjct: 203 ARTDKGVHAAGNMISLKLIVEDE---------DIVERINKELSPQIRVWGVERTVGSFSC 253
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YL+P+
Sbjct: 254 YQACDSRWYEYLIPSHAF 271
>gi|323331140|gb|EGA72558.1| Pus1p [Saccharomyces cerevisiae AWRI796]
Length = 465
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 12/127 (9%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
VGY GT Y G+Q TIE L A +AG I + N +L+K + R++RTDKGV
Sbjct: 2 VGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRAARTDKGV 58
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ +I LKM I +DP D+ +++N LP I+V+ I ++FD R+ C+ R
Sbjct: 59 HAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSR 109
Query: 204 KYSYLLP 210
Y YLLP
Sbjct: 110 WYEYLLP 116
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 267 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 325
Query: 443 NSF 445
F
Sbjct: 326 PVF 328
>gi|392589992|gb|EIW79322.1| pseudouridine synthase [Coniophora puteana RWD-64-598 SS2]
Length = 569
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 15/148 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK + K+ AL +G+ G + G+Q+Q D + TIEG L AL + G + + N +
Sbjct: 127 DKAPRLPKRMTALLLGFCGRGFNGMQIQPD---VRTIEGVLFDALVRVGAVSQDNADDPV 183
Query: 130 KIAWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFS 186
K++ R++RTD GVH+ ++ +K+ IP G+ D +R+N LP I+V+S
Sbjct: 184 KVSLGRAARTDAGVHAAGNLVSMKLITAIP---------GVPDFIERLNTELPPEIRVWS 234
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVI 214
+ Q SF+ R C+ RKY+YL P+ ++
Sbjct: 235 EVRVQNSFNARTACDSRKYTYLFPSYLL 262
>gi|296812761|ref|XP_002846718.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
gi|238841974|gb|EEQ31636.1| tRNA pseudouridylate synthase Lsp1 [Arthroderma otae CBS 113480]
Length = 576
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCATE---KTIEGDLFAAFVAANAISKANAMDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLNPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 206 YQFCDSRMYEYLIPS 220
>gi|261332259|emb|CBH15253.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 573
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL---QKIAW 133
K+KVA+ GY+G Y GLQ + T+E EL AL +A I E NY QK+ W
Sbjct: 32 KRKVAIIFGYIGERYCGLQWNHLPN-YPTVEEELLRALRRADMISEENYAQQKVQQKLNW 90
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQR 192
R+SRTDKGVH+L + L + +P + + A+R + LP +I V+ I+P R
Sbjct: 91 ERASRTDKGVHALRNVFSLNVMLPYAKDSTSEFDVGEARRLLTEALPSDIVVYEIIPVTR 150
Query: 193 SFDPRRECNLRKYSYLLP 210
SF+ C RKY Y LP
Sbjct: 151 SFNAYMMCGSRKYEYYLP 168
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 379 LGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL-TLSLAKHSRIVLPLAPSEV 437
+G V I +SG+SF+ +QIRKM+GT ++ LP D L L K R P+ P+
Sbjct: 432 VGLEVVRIELSGQSFLFNQIRKMIGTVASMCAAGLPPDYLRDHFLNKAVRCGTPMVPANG 491
Query: 438 LFL 440
LFL
Sbjct: 492 LFL 494
>gi|332254114|ref|XP_003276176.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Nomascus
leucogenys]
Length = 421
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 95/179 (53%), Gaps = 17/179 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLS--TIEGELETALFKAGGIRESNYGNLQKIAWA 134
K+K+ L + Y G Y G+Q R+ SL TIE +L +AL ++G I E++ +++K+++
Sbjct: 76 KRKIVLLMAYSGKGYHGMQW-RNLGSLQAQTIEDDLVSALVRSGCIPENHGEDMRKMSFQ 134
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ + F
Sbjct: 135 RCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGF 184
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYT 249
+ + C+ R Y YLLP + E + N +L ++G H FHN+T
Sbjct: 185 NSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFT 243
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S
Sbjct: 255 RYILEMYCEEPFVREGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGS 314
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 315 -EKVDVPKAPGLGLVLERVHF 334
>gi|402223576|gb|EJU03640.1| tRNA pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 357
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVAL +G+ GT G+Q TIEG L AL KAG + N + K+A +R+
Sbjct: 90 KRKVALLIGFCGTGCHGMQYNPPHR---TIEGILFDALVKAGCVSADNADDPTKVALSRA 146
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFD 195
+RTD GVH+ ++ +K+ +P G+ D+ + VN HLP ++++ I+ + +F
Sbjct: 147 ARTDTGVHAAGNLVSMKI-------IREPEGVADVMRAVNVHLPPEVRLWGIVRTANNFM 199
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLT--AAEI--DSHISDFNAILNEFEGEHPFHNYTER 251
R C+ R Y YL P+ ++ T AA++ D +SD E HPF E
Sbjct: 200 ARTSCDSRVYEYLFPSYMLLPPKPGTKMAAQVRSDRALSDETFAQVEPGEAHPFWATEEG 259
Query: 252 SKYRRK 257
+ +RK
Sbjct: 260 DELQRK 265
>gi|356573442|ref|XP_003554869.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Glycine max]
Length = 462
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KVA+ Y G Y+G+Q TIEG+LE L+ +G + E + G ++ WAR
Sbjct: 52 KRRKVAIFFAYCGVGYQGMQKNP---GAKTIEGDLEEVLYVSGAVPEQDRGVPKRYDWAR 108
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
S+RTDKGV ++ ++ + I DP G L R+N++LP I++F SF+
Sbjct: 109 SARTDKGVSAVGQVVSGRFYI-------DPPG--LVDRLNSNLPSQIRIFGYKRVTASFN 159
Query: 196 PRRECNLRKYSYLLP 210
++ C+ R+Y YL+P
Sbjct: 160 AKKFCDRRRYVYLIP 174
>gi|326478893|gb|EGE02903.1| tRNA pseudouridine synthase [Trichophyton equinum CBS 127.97]
Length = 582
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLNPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 206 YQFCDSRMYEYLIPS 220
>gi|326469581|gb|EGD93590.1| tRNA pseudouridine synthase [Trichophyton tonsurans CBS 112818]
Length = 582
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLNPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 206 YQFCDSRMYEYLIPS 220
>gi|307136307|gb|ADN34131.1| tRNA pseudouridine synthase family protein [Cucumis melo subsp.
melo]
Length = 519
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 80/145 (55%), Gaps = 12/145 (8%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
NS+ K + +++KVA+ Y G Y+G+Q TIE +LE AL+ AG + E +
Sbjct: 43 NSAAPKKQRYKRRKVAIFFAYCGVGYQGMQKN---PGAKTIEADLEEALYLAGAVPEQDR 99
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
G ++ WARS+RTDKGV ++ ++ + I P + D R+N++L I++F
Sbjct: 100 GLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVD---------RLNSNLSPQIRIF 150
Query: 186 SILPSQRSFDPRRECNLRKYSYLLP 210
SF+ ++ C+ R+Y YL+P
Sbjct: 151 GYKRVTASFNAKKFCDRRRYVYLIP 175
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ + G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+
Sbjct: 371 GIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVNINVPTAPEVGLY 430
Query: 440 L 440
L
Sbjct: 431 L 431
>gi|453082482|gb|EMF10529.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 687
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ E TIEG+L A +AG I ++N + +K + R
Sbjct: 132 KRKVAVLIGYSGTGYKGMQISAKE---KTIEGDLFQAFIRAGAISKANAEDPKKSSLVRC 188
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ MI LK+ + D+ +++NA L I+V+ I + SF
Sbjct: 189 ARTDKGVHAAGNMISLKLIVE---------DTDIVEKINAELSPQIRVWGIERTIGSFSC 239
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 240 YQACDSRWYEYLMPS 254
>gi|302656568|ref|XP_003020036.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
gi|291183816|gb|EFE39412.1| hypothetical protein TRV_05897 [Trichophyton verrucosum HKI 0517]
Length = 570
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLNPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 206 YQFCDSRMYEYLIPS 220
>gi|198427214|ref|XP_002128771.1| PREDICTED: similar to Pseudouridine synthase 1 [Ciona intestinalis]
Length = 531
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ Y G +Y GLQM R E + TIEG+L AL A + + K+ + +
Sbjct: 68 KRKVAMLFAYCGANYHGLQMNRGERWIKTIEGDLFQALVDAKVVPSNCVQEPHKMTYKSA 127
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGV + + LK+ + ++ G+ +N HLP +I V ++ + + F+
Sbjct: 128 SRTDKGVSTCGQVASLKLRL-----NENVVGL-----INQHLPEDIVVMAVRRTTQGFNA 177
Query: 197 RRECNLRKYSYLLPAEVIG-INSQLTAAEI-DSHISDFNAILNEFEGEHPFHNYT 249
+ + R YSY LP + T+ +I + + +IL ++G H FHN+T
Sbjct: 178 QLKAEGRTYSYTLPTFAFADYGTGNTSYKITEDKLLKVKSILYRYKGTHSFHNFT 232
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ ++I G+SFMLHQIRKM+G +A+ L + ++ + P AP L L
Sbjct: 262 FITLTIKGQSFMLHQIRKMIGLLIAMVNGLAKEQHFIRAFSEPLEDI-PKAPGTGLVLEK 320
Query: 443 NSFSVRTRPGVTR-PEMQ-TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIEN 500
+ G + P Q V+ ++ +DEF + P + K + +S +W+E
Sbjct: 321 VHYD-----GFNKGPAKQHGGVDFTDVQDKIDEFRKTRIFPYIYK-KEIEESSMLDWLET 374
Query: 501 LEKFTSIPNEQLDEVRNAWQLWKEKRFESKTIVESA 536
L + ++ + W +K+ E++T E A
Sbjct: 375 LSRHDYSGKSSKEQWEYQVKEWSKKKLENETKTEDA 410
>gi|302509324|ref|XP_003016622.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
gi|291180192|gb|EFE35977.1| hypothetical protein ARB_04913 [Arthroderma benhamiae CBS 112371]
Length = 573
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKV + +GY GT Y G+Q+ E TIEG+L A A I ++N + +K ++ R
Sbjct: 98 KKKVIVMLGYSGTGYHGMQLCPTE---KTIEGDLFAAFVAANAISKANAVDPKKSSFVRC 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I +DP D+ +++N L I+V+ I+P+ + F
Sbjct: 155 ARTDKGVHAAGNVVSLKLII------EDP---DIVQKINEKLNPQIRVWGIIPATKGFSA 205
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 206 YQFCDSRMYEYLIPS 220
>gi|402594751|gb|EJW88677.1| RNA recognition domain-containing protein [Wuchereria bancrofti]
Length = 537
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 109/231 (47%), Gaps = 48/231 (20%)
Query: 59 TLTRPTPNSS--DDKWEPVRKKK-----VALRVGYVGTDYRGLQM--------------- 96
+L PTP S D EPVRK + AL + Y G Y G+Q+
Sbjct: 300 SLLPPTPADSAGDISDEPVRKSRRKEYSYALLLAYQGKKYNGMQLCIGLNQCMRPLFYEL 359
Query: 97 --------------QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKG 142
Q+D TIEGEL A+ K G I E++ + + A+ R++RTD+
Sbjct: 360 GVCDVNVQYWQYLVQKD---FPTIEGELFKAMAKCGYICENDVFSPVRFAFQRAARTDRS 416
Query: 143 VHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAHLPRNIKVFSILPSQRSFDPRRECN 201
V S A +C M + P+ + Y + A ++NAHLP I+V + + RSF + C+
Sbjct: 417 V-SAARQMC-SMRLAPE---NHEYFLKTATDKLNAHLPEEIRVLGVRRAIRSFKAHKNCD 471
Query: 202 LRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYT 249
R YSY LP ++LT + ++ +++ N +L ++G H F NYT
Sbjct: 472 KRTYSYTLPTYAFARANELTNSGFRMSETSMAELNDLLALYKGTHNFFNYT 522
>gi|406868239|gb|EKD21276.1| tRNA pseudouridine synthase A [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 688
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY G+ Y+G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 146 KRKVAVMIGYAGSGYKGMQINGAE---KTIEGDLFKAFVAAGAISKANADDPKKSSLVRC 202
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + ++P D+ +++N +LP I+V+ I + +F
Sbjct: 203 ARTDKGVHAAGNVISLKLIV------EEP---DIIQKINENLPPQIRVWGIERTNGAFSC 253
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 254 YQTCDSRWYEYLIP 267
>gi|157115880|ref|XP_001658327.1| pseudouridylate synthase [Aedes aegypti]
gi|108876737|gb|EAT40962.1| AAEL007354-PA [Aedes aegypti]
Length = 455
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 18/184 (9%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
++K+K + +GY G +Y G MQR+ + TIE EL A+ K I E + Q+I +
Sbjct: 113 IKKRKCVIVMGYSGVNYLG--MQRNPGT-KTIEEELLVAMLKHNWISEEAFNQPQQIQFQ 169
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV + ++ +K+ P +D+ +N LP I+VF++ + F
Sbjct: 170 RAARTDKGVSAATQVVSIKL----------PDNVDIDA-LNKDLPEQIRVFAVKRVTKGF 218
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTE 250
+ + C+ R Y+Y LP ++ E + + L FEG FHN+T
Sbjct: 219 NSKSNCDARTYTYTLPTMAFALHEDKVDMESYRVPEERLKVVEETLKLFEGTKNFHNFTS 278
Query: 251 RSKY 254
R ++
Sbjct: 279 RKEF 282
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
S+ F F C + + + + I G+SFMLHQIRKMVG +AV R L P++ +
Sbjct: 286 SSKRFIMSFECEAPFVPEGSTVEFATLKIKGQSFMLHQIRKMVGLTLAVVRGLTPQETIV 345
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+ + R +P AP L L
Sbjct: 346 KAF-EEQRYGVPTAPGLGLVL 365
>gi|295660198|ref|XP_002790656.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226281531|gb|EEH37097.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 600
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 14/141 (9%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK P K+KVA+ +GY G+ Y G+Q+ + E TIEG+L TA AG I ++N + +
Sbjct: 100 DKRRP--KRKVAVLLGYSGSGYHGMQLSQTE---KTIEGDLFTAFVAAGAISKANATDPK 154
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K + R +RTDKGVH+ ++ LK+ I D+ ++ +++N HL I+V+ I
Sbjct: 155 KSSLVRCARTDKGVHAAGNVVSLKL-IVEDS--------NVVQKINNHLSPQIRVWGIEV 205
Query: 190 SQRSFDPRRECNLRKYSYLLP 210
+ +SF + C+ R Y YL+P
Sbjct: 206 TNKSFSSYQLCDSRVYEYLIP 226
>gi|397605213|gb|EJK58925.1| hypothetical protein THAOC_20915 [Thalassiosira oceanica]
Length = 551
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 94/165 (56%), Gaps = 9/165 (5%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E V K+K+A +G++G+ Y G Q+ + T++ E+E ALF++G + +N+G+ K
Sbjct: 136 EKVPKRKLAALIGFLGSKYSGFQVNPAKR---TLQAEIELALFRSGILSATNFGHPSKCG 192
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR----VNAHLPRNIKVFSIL 188
W+ S+RTDKGVH+ + + K E+ W D + ++ VN++LP +I+V I
Sbjct: 193 WSNSARTDKGVHAASQVCSFKGEMI--CWNDQISQDEQLEKMRLIVNSNLPSDIQVLDIK 250
Query: 189 PSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
+ RSF R + +Y Y++P+ ++ ++ A +D + +F+
Sbjct: 251 RTTRSFCSRTARDKVRYQYMVPSFLLMPPDEVKRAFVDVKVEEFD 295
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 43/65 (66%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I+G+SF+L+QIRKMV AV + R + + + S ++ + + + +AP++ LFL
Sbjct: 390 WVPVQITGQSFLLNQIRKMVSAAVDLARGAVTHEQIEQSFSRQNLMKVDVAPAQGLFLDR 449
Query: 443 NSFSV 447
+SF +
Sbjct: 450 SSFEM 454
>gi|224000315|ref|XP_002289830.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975038|gb|EED93367.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 323
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 58/220 (26%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
V ++GT+Y G Q+ +H T++ +E LFKAG I SN+G K +W+ S+RTDKGV
Sbjct: 3 VSFLGTNYSGFQINSTQH---TLQAAIELGLFKAGLISPSNFGWPSKYSWSNSARTDKGV 59
Query: 144 HSLATMICLKMEIPPDAWKDDPYGID-----LAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
H+ A ++ +K E+ + D I+ + ++VN HLP +I+V I R+F R
Sbjct: 60 HAAAQVVSMKGEM---IFHSDTVSIEDQLNAMREKVNEHLPNDIRVLDIERVTRAFCART 116
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAA---------------------------------EI 225
+ +Y Y++P+ + ++ A E+
Sbjct: 117 NRDKVRYQYMVPSFMFSSREEICCAFGNIGETAIEDAKSRAKITPMEASNIVQDAVTDEV 176
Query: 226 --------------DSHISDFNAILNEFEGEHPFHNYTER 251
D + + L FEG H FHNYT R
Sbjct: 177 MQQARGKLIGYRVNDDQMERLRSGLKVFEGTHTFHNYTRR 216
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + I G+SF+L+QIRKM+ AV + R + + + SL K SR+ + +AP++ LF
Sbjct: 241 GTEWIPVQIVGQSFLLNQIRKMISAAVDLARGTVTHEQIQQSLKKGSRMKVNVAPAQGLF 300
Query: 440 LRANSFSVRTR 450
L + F + +
Sbjct: 301 LDRSYFELYNK 311
>gi|345569276|gb|EGX52144.1| hypothetical protein AOL_s00043g534 [Arthrobotrys oligospora ATCC
24927]
Length = 745
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ TIEG+L A AG I ++N + +K + R
Sbjct: 233 KKKVAVLIGYCGTGYKGMQLN---PPTKTIEGDLFAAFVAAGAISKANSDDPKKSSLVRC 289
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +D +NA L I+V+ I+P+ F
Sbjct: 290 ARTDKGVHAAGNVISLKLIIESPTVIED---------INAQLVPQIRVWDIIPTTNGFSC 340
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 341 YQFCDSRVYEYLVP 354
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPL--APSEVLFL 440
++ + + G+SFM+HQIRKMVG + R P + +T + + R+V+P+ AP+ L L
Sbjct: 576 WLSLKVHGQSFMMHQIRKMVGMVMLTIRYGCPIERITEA---YGRLVIPIPKAPALGLLL 632
>gi|449679562|ref|XP_002163885.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Hydra
magnipapillata]
Length = 434
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 22/200 (11%)
Query: 59 TLTRPTPNSSDD-KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
+T PN + K + RK+KVAL + Y G +Y G+Q D + TIE +L AL +
Sbjct: 70 NITEAKPNIVKEFKADFSRKRKVALLLAYCGANYSGMQKNPD---VETIEEKLLDALCEM 126
Query: 118 GGIR-----ESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK 172
IR E N+ +I++ R++RTDKGV + + LK+ + + + +D
Sbjct: 127 KAIRAEHKHEFLVNNVNQISFQRAARTDKGVSAARQTVSLKL-VASNTFLED-------- 177
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHI 229
VN LP +I+VF + +SF+ + C+ R Y YL+P+ ++ + + D
Sbjct: 178 -VNKLLPDDIRVFGLERVTKSFNAKCCCSGRAYEYLIPSFAFAPSNDVFSPSYRISDEQF 236
Query: 230 SDFNAILNEFEGEHPFHNYT 249
+ N + + +EG H FHN+T
Sbjct: 237 AKLNRLFSCYEGTHNFHNFT 256
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S K + G ++ I ISG+SFM+HQIRKM+G +AV R P D + S +
Sbjct: 268 RYIISFKANKPFECQGHEFIAIEISGQSFMIHQIRKMIGLVIAVCRGHCPEDTIEKSWLQ 327
Query: 425 HSRIVLPLAPSEVLFLRA---NSFSVR-TRPGVTRPEMQTMVESEEILKMVDEFYTSVTL 480
++ +P AP L L N ++ + G+ +P + E E ++ + S+
Sbjct: 328 -AKADIPKAPGLGLLLCKVFYNHYNEKHCNDGLHKPITWSEQELEVERFKIEHIWYSIIN 386
Query: 481 PEVSKFLDATKSPWTEWIENLEKFT 505
E+ KSP W++ L T
Sbjct: 387 EEIK------KSPMVTWLKTLVNHT 405
>gi|452843249|gb|EME45184.1| hypothetical protein DOTSEDRAFT_87604 [Dothistroma septosporum
NZE10]
Length = 679
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 77/135 (57%), Gaps = 12/135 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ E TIEG+L A KAG I ++N + +K + R
Sbjct: 137 KRKVAVLIGYSGTGYKGMQISGTE---KTIEGDLFQAFIKAGAISKANAEDPKKSSLVRC 193
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ MI LK+ + D D+ ++N L I+V+ I + SF
Sbjct: 194 ARTDKGVHAAGNMISLKLIVEDD---------DIVDKINEALSPQIRVWGIERAIGSFSC 244
Query: 197 RRECNLRKYSYLLPA 211
+ C+ R Y YL+P+
Sbjct: 245 YQACDSRWYEYLIPS 259
>gi|392565002|gb|EIW58179.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 420
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 52/227 (22%)
Query: 94 LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLK 153
+Q+Q D L TIEG L AL K G + E N N K+ AR++RTD GVH+ ++ +K
Sbjct: 1 MQIQPDP-KLRTIEGVLFEALIKVGAVSEDNSDNPTKVKLARAARTDAGVHAAGNVVSMK 59
Query: 154 M--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ IP G+ DL R+N LP I+++SI+ Q SF+ R C+ RKY+Y P
Sbjct: 60 LINAIP---------GVPDLVARINEELPPEIRIWSIVRVQNSFNARTTCDSRKYTYFFP 110
Query: 211 AEVI-------GINSQL--TAAEIDSH----------------------------ISDFN 233
+ ++ G+++ L E SH ++
Sbjct: 111 SYLMIPPKPNSGLHNTLKTQGLECASHSFWENADPTATPQDDLKRKREYRITPEPLAALR 170
Query: 234 AILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
+FEG H FHN+T +R + R K + S AV+ E
Sbjct: 171 EAAKKFEGSHNFHNFTVGRDFRDR--SCQRFLKSVEISDPAVYGDTE 215
>gi|393243262|gb|EJD50777.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 470
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 73/138 (52%), Gaps = 10/138 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ A+ Y GT + GLQ E T+E + AL K G I N + K+ W R+
Sbjct: 9 KRQHAVLFAYSGTGWNGLQYHPPESGAVTVENTIFDALVKVGAISTDNADDPYKLKWQRA 68
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD GVH+LA ++ ++ I P +L + +NA LP NI+V+ I+ Q SF+
Sbjct: 69 ARTDAGVHALANVLSAQLCIVP----------NLVENLNAALPPNIRVWDIIRVQNSFNS 118
Query: 197 RRECNLRKYSYLLPAEVI 214
C R YSY LP ++
Sbjct: 119 HTFCESRYYSYTLPTYLL 136
>gi|402465320|gb|EJW01196.1| tRNA pseudouridine synthase A [Edhazardia aedis USNM 41457]
Length = 326
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 19/181 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+++A+ +GY G DY G Q+ +D T+E +L + I+E N + +KI R
Sbjct: 2 KRRIAVIIGYNGKDYHGSQLNKD---FPTVEYQLVKGFLEISAIKEINSLDPKKIGLQRG 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVH++ +I LK+E D DL K +NI ++ I+ +SF P
Sbjct: 59 SRTDKGVHAVMAVITLKIE-------KDITSCDLKKLKFFLETKNIYLYKIVRVSKSFMP 111
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD-----FNAILNEFEGEHPFHNYTER 251
+ +C+ R Y YLLP+ + S L+ D IS+ + ++ G H F N+T +
Sbjct: 112 KHQCDSRIYEYLLPSFIFS--SDLSDK--DYKISEETHSLLRDLFVKYIGTHNFINFTSK 167
Query: 252 S 252
+
Sbjct: 168 N 168
>gi|387594163|gb|EIJ89187.1| hypothetical protein NEQG_01006 [Nematocida parisii ERTm3]
gi|387595640|gb|EIJ93263.1| hypothetical protein NEPG_01605 [Nematocida parisii ERTm1]
Length = 325
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 10/174 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK+VAL +GY G Y+G Q+ ++E TIE + + I E N + K+A RS
Sbjct: 3 KKRVALIIGYNGIGYKGSQINKEE---KTIEKTVCDEIHALHYISERNAEDYSKVALQRS 59
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLP-RNIKVFSILPSQRSFD 195
SRTDKGVH+ ++ L++EI + DL ++ LP I + ++ + ++FD
Sbjct: 60 SRTDKGVHAAMLVLSLRIEIS-----EGRSCKDLENKLKESLPAHGIVLHRLVETTKNFD 114
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ C R Y Y +P S T+ +I F L + EG H FHN+T
Sbjct: 115 AKHRCESRVYEYFVPQSAYVTESD-TSEDISRKTKIFTETLQKMEGTHNFHNFT 167
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLL-PRDI---LTLSLAKHSRIVLPLAPS 435
G + ++ + G+SFM+HQIRKM+G +V ++L P D+ L L + R + P P
Sbjct: 191 GLKWNKVVLHGQSFMIHQIRKMIGFSVLAAQRLAGPLDVPKALELVFSTEKRNI-PKVPG 249
Query: 436 EVLFLRANSFS-VRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPW 494
E+L L + FS + G TR + DE+ ++ PEV +A +
Sbjct: 250 ELLLLSHSYFSNYNEKFGDTRGVIDNA--------GCDEYKQNILYPEVCTKNNA--ELF 299
Query: 495 TEWIENLEKFT 505
W E ++K T
Sbjct: 300 NNWQEVIDKHT 310
>gi|398404858|ref|XP_003853895.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
gi|339473778|gb|EGP88871.1| hypothetical protein MYCGRDRAFT_39250 [Zymoseptoria tritici IPO323]
Length = 538
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 79/138 (57%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K KVA+ +GY GT Y+G+Q+ E TIEG+L A +AG I ++N + +K ++ R
Sbjct: 73 KHKVAVMIGYSGTGYKGMQISGSE---KTIEGDLFEAFVRAGAISKANAEDPKKSSFVRC 129
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ MI LK+ + + ++ +++NA L I+V+ I + SF
Sbjct: 130 ARTDKGVHAAGNMISLKLIVEDE---------NIVEKINAELSSQIRVWGIERTIGSFSC 180
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YL+P+
Sbjct: 181 YQACDSRWYEYLIPSHAF 198
>gi|342183994|emb|CCC93475.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 553
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN---LQKIAW 133
K+KVA+ GY+G Y GLQ + T+E EL AL + I E NY QK+ W
Sbjct: 20 KRKVAIIFGYIGERYCGLQWNHLP-NYPTVEEELLRALHRTNMISEENYSQEKVQQKLNW 78
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQR 192
R+SRTDKGVH+L +I L + +P Y AKR + + LP +I V+ I+P R
Sbjct: 79 ERASRTDKGVHALRNVISLNLMLPHAKGSASEYDTVEAKRLLMSVLPPDIIVYEIIPVTR 138
Query: 193 SFDPRRECNLRKYSYLLP 210
SF+ C R Y Y +P
Sbjct: 139 SFNAYMMCGARTYEYYIP 156
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 378 SLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS-RIVLPLAPSE 436
S G V I ++G+SF+ +QIRKM+G +++ LP L S R P+AP+
Sbjct: 411 SNGLEVVRIELNGQSFLFNQIRKMIGAVSSMRVAGLPPAYLRDHFLNRSVRCGTPMAPAN 470
Query: 437 VLFLRANSF 445
LFL F
Sbjct: 471 GLFLSYLDF 479
>gi|345323862|ref|XP_001510884.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 403
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 30/185 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 56 KRKIVLLMAYSGKGYYGMQRHVGSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMSFQRC 115
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D ++ +++N+HLP I++ + F+
Sbjct: 116 ARTDKGVSAAGQIVSLKV------WLID----NILEKINSHLPSQIRILGLKRVTGGFNS 165
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD------------FNAILNEFEGEHP 244
+ C R Y Y+LP L A D D N +L ++G H
Sbjct: 166 KNNCTARTYFYMLPT--------LAFAHKDHDPQDETYRLSPEVLERVNRLLACYKGTHH 217
Query: 245 FHNYT 249
FHN+T
Sbjct: 218 FHNFT 222
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 361 ASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL 420
AS R I C + G + I + G+SFM+HQIRKM+G +A+ + + ++
Sbjct: 230 ASGMRYIMEMYCEEPFVREGMEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYADQSVMER 289
Query: 421 SLAKHSRIVLPLAPSEVLFLRANSFSVRTR----PGVTRPEMQTMVESEEILKMVDEFYT 476
S + ++ +P AP L L F R G+ P VE EE + + E Y
Sbjct: 290 SWGE-EKVDIPKAPGLGLVLERVHFESYNRRFGNDGLHEP--LDWVEEEEKMTIFKEQYI 346
Query: 477 SVTL 480
T+
Sbjct: 347 YSTI 350
>gi|396479511|ref|XP_003840772.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
gi|312217345|emb|CBX97293.1| similar to tRNA pseudouridine synthase [Leptosphaeria maculans JN3]
Length = 615
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y+G+Q+ ++ TIEG+L A AG I ++N + +K + R
Sbjct: 107 KRKVAVMIGYSGTGYKGMQI---DYKQKTIEGDLFNAFVAAGAISKANATDHKKSSLVRC 163
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I + D+ +++N +L I+V+ I + SF
Sbjct: 164 ARTDKGVHAAGNVVSLKLIIEDE---------DIVQKINDNLSDQIRVWGIQRTVGSFSC 214
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 215 YQACDSRWYEYLIP 228
>gi|430811918|emb|CCJ30624.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 443
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 78/138 (56%), Gaps = 12/138 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA +GY GT Y GLQ+ TIE ++ AL + G I N + +K + R+
Sbjct: 55 KRKVACLIGYCGTGYHGLQLNDPSR---TIERDIFEALVRVGAISVMNSDDPKKSSLNRA 111
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ +I LKM I +L + +NA LP +I+++SI + SF+P
Sbjct: 112 ARTDRGVHAACNLISLKMIIEQQ---------NLLETINAALPESIRMWSITRTLGSFNP 162
Query: 197 RRECNLRKYSYLLPAEVI 214
+ C+ R Y YL+P+ V
Sbjct: 163 KTFCDSRIYEYLVPSYVF 180
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + + G+SFMLHQIRKMV + V R P ++ + K +R +P APS L L
Sbjct: 338 WISLKVHGQSFMLHQIRKMVALIILVVRCGTPLSFISETF-KSTRYNIPKAPSLGLLLEK 396
Query: 443 NSFS 446
FS
Sbjct: 397 PIFS 400
>gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi]
Length = 443
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 19/185 (10%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V+++K + +GY G DY G MQR+ + TIE +L A+ K I + + Q+I +
Sbjct: 101 VKRRKSVILLGYSGVDYFG--MQRNPGT-RTIEEDLLRAMLKQEWINDEGFRQPQQIQFQ 157
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV + ++ +K+ P +D+A +N LP I+V+++ + F
Sbjct: 158 RAARTDKGVSAAVQVVSIKL----------PDNLDVAA-LNGELPPQIRVYAVKRVTKGF 206
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQ-----LTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ + C+ R Y+Y LP N + LT + N +L + G FHN+T
Sbjct: 207 NSKTNCDARTYTYTLPTIAFAANDEKDLDILTYRAPADRLQRVNEVLALYLGTKNFHNFT 266
Query: 250 ERSKY 254
R ++
Sbjct: 267 SRKEF 271
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 368 FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSR 427
F C + + I I G+SFMLHQIRKMVG +AV R L DI+ + + R
Sbjct: 283 FECGTPFVPDGTTAEFATIRIKGQSFMLHQIRKMVGLTLAVVRGLSQADIIEKAFGQE-R 341
Query: 428 IVLPLAPSEVLFL 440
+P AP L L
Sbjct: 342 YGIPTAPGLGLVL 354
>gi|119618936|gb|EAW98530.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
gi|119618939|gb|EAW98533.1| pseudouridylate synthase 1, isoform CRA_a [Homo sapiens]
Length = 338
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+ Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R +RTDKGV
Sbjct: 1 MAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGV 60
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
+ ++ LK+ W D D+ +++N+HLP +I++ + F+ + C+ R
Sbjct: 61 SAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDAR 110
Query: 204 KYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTER 251
Y YLLP + E + N +L ++G H FHN+T +
Sbjct: 111 TYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQ 162
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 187 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 245
Query: 440 LRANSF 445
L F
Sbjct: 246 LERVHF 251
>gi|378755904|gb|EHY65929.1| hypothetical protein NERG_00625 [Nematocida sp. 1 ERTm2]
Length = 316
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 87/174 (50%), Gaps = 11/174 (6%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK+VAL +GY G Y+G Q+ +DE TIE + ++ I + N + K+ RS
Sbjct: 3 KKRVALIIGYNGIGYKGSQINKDE---KTIEKTVCDEIYGLKYISDRNAEDYSKVGLQRS 59
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQRSFD 195
SRTDKGVH+ ++ L++E D+ DL + + LPR NI + I+ + ++FD
Sbjct: 60 SRTDKGVHAAMLVLSLRIET------DNRSISDLERELKEILPRHNITLHRIVETTKNFD 113
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ C R Y Y +P S +I F L + +G H FHN+T
Sbjct: 114 AKNRCESRVYEYFVPLSAYTQESD-APEDITRKKDIFMESLKKMQGTHNFHNFT 166
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK---HSRIVLPLAPSE 436
G + + + G+SFM+HQIRKM+G A +++ + +L K ++ +P P E
Sbjct: 190 GIKWCRVLLHGQSFMIHQIRKMIGFATLAAQRIQTVGDVQEALDKVMSPEKVNIPKVPGE 249
Query: 437 VLFLRANSFSVRTRP-GVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWT 495
+L L + F+ + G +R + E L + Y +V E +K S W
Sbjct: 250 LLLLSHSYFTNYNKNFGASRGVIDNAGCDEYKL---EHLYPAVCTQENAKLF----SDWQ 302
Query: 496 EWIE 499
E I+
Sbjct: 303 EVID 306
>gi|302417130|ref|XP_003006396.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261353998|gb|EEY16426.1| tRNA pseudouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 439
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 12/122 (9%)
Query: 89 TDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLAT 148
T Y GLQ+ DE TIEG+L A AG I ++N + +K + +R +RTDKGVH+
Sbjct: 54 TGYYGLQINWDE---KTIEGDLFKAFIAAGAISKANADDPKKSSLSRCARTDKGVHAAGN 110
Query: 149 MICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYL 208
+I LK+ I D D+ ++NAHLP I+V+ + + SF + C+ R Y YL
Sbjct: 111 LISLKLIIEDD---------DIVDKINAHLPDQIRVWGLQRTSNSFSAYQACDSRWYEYL 161
Query: 209 LP 210
LP
Sbjct: 162 LP 163
>gi|156087442|ref|XP_001611128.1| tRNA pseudouridine synthase [Babesia bovis T2Bo]
gi|154798381|gb|EDO07560.1| tRNA pseudouridine synthase, putative [Babesia bovis]
Length = 414
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 51/221 (23%)
Query: 84 VGYVGTDYRGLQMQRD--EHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ Y+GT+Y G Q+QRD + + T+E + AL I S+ NL K+ +++SRTDK
Sbjct: 33 LSYIGTNYHGFQIQRDAGDDGIDTVEARVINALVTTDAIHGSHKNNLGKLQLSKASRTDK 92
Query: 142 GVHSLATMICLKMEIP------PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
GVH+ T I + E+ P K+ L R+N LP +I+ F +L R F
Sbjct: 93 GVHAACTYIGGRFELSHLSAGEPGISKEQC----LVSRLNTVLPDDIRCFQVLRVTRGFC 148
Query: 196 PRRECNLRKYSYLLPAEV------------------------IGINSQL----------- 220
R C+ R Y Y++P + + +NS+
Sbjct: 149 ARSMCSKRMYEYVIPLSLLRYRYVCGEDDNKRTFEKTSNLMNLHMNSRQNIHCKRLSSVA 208
Query: 221 ----TAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
T E D + +IL+++ G H F N+T+R K K
Sbjct: 209 LHEGTTEERDVDMVLLQSILSDYCGSHDFKNFTQRQKVEEK 249
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 377 KSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSE 436
+S+G V + I+G+SF+ +QIRKM+G AV + PR + +L+K + PLAP+E
Sbjct: 264 ESIGINAVRVIITGQSFLYNQIRKMIGLGYAVYLGVAPRCAIKFALSKWHAVNTPLAPAE 323
Query: 437 VLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTE 496
LFL F R P +E ++I V+ F + PE++ + W
Sbjct: 324 GLFLHHPYFDAYNRR--CSPPQTPFIEYDDIESSVENFKRTRIYPEIASTFET--DVWKT 379
Query: 497 WIENL 501
W+E L
Sbjct: 380 WMEKL 384
>gi|169849317|ref|XP_001831362.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
gi|116507630|gb|EAU90525.1| pseudouridylate synthase [Coprinopsis cinerea okayama7#130]
Length = 568
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 21/174 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ AL +G+ G+ Y G+Q+Q S+ TIEG L AL K G + + N + K+A AR+
Sbjct: 133 KRQSALLIGFCGSGYSGMQIQ-PMDSVKTIEGVLFQALVKVGAVSQDNADDPVKVALARA 191
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ +KM IP G+ DL VN LP I+ + + +Q S
Sbjct: 192 ARTDAGVHAAGNVVSMKMISTIP---------GVPDLVAAVNEQLPPEIRFWGFVRTQNS 242
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE--HPF 245
F+ R RKY+Y P+ ++ I + + +D + FN L + HPF
Sbjct: 243 FNAR----FRKYTYFFPSYLL-IPPK-PGSGLDERLKAFNESLGDTVPRPIHPF 290
>gi|195449703|ref|XP_002072187.1| GK22713 [Drosophila willistoni]
gi|194168272|gb|EDW83173.1| GK22713 [Drosophila willistoni]
Length = 412
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
++D +E +++KK A+ + Y G +Y G MQR+ + TIE EL + K I E ++
Sbjct: 53 ATDPAFERIKRKKSAILLSYCGANYFG--MQRNP-GMQTIEEELFKVMLKHKWITEDSFE 109
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+Q + R++RTDKGV S A +C +++P D +DL K N LP I++F
Sbjct: 110 QVQIACFQRAARTDKGV-SAARQVC-SVKLPDD--------LDL-KAFNEDLPEQIRLFG 158
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPA------------EVIGINSQLTAAEIDSHISDFNA 234
+ + F+ + +CN R Y+Y LP E Q T H+
Sbjct: 159 VERVTKGFNAKDQCNARTYTYTLPTVAFAPCQSESDKEAQPPEEQSTYCISPEHLQKVRE 218
Query: 235 ILNEFEGEHPFHNYTERSKY 254
L +EG FHN+T + +
Sbjct: 219 TLQLYEGTKNFHNFTSKKNF 238
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA F +FSCS + G +V + + G+SFMLHQIRKMVG A+A+ R L
Sbjct: 242 SAKRFIMLFSCS-DPFKSPQGIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTSTLE 300
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+L + R+ LP+AP L L
Sbjct: 301 RALTEE-RLDLPMAPGLGLVL 320
>gi|242776451|ref|XP_002478840.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
gi|218722459|gb|EED21877.1| tRNA pseudouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
Length = 580
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 73 KKKVAVMIGYSGTGYHGMQLSPTE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 129
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ ++ LK+ + +DP D+ K++N +L I+V+ + F
Sbjct: 130 ARTDRGVHAAGNVVSLKLIV------EDP---DIVKKINDNLSPQIRVWGYEIVTKGFSC 180
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 181 YQLCDSRMYEYLIP 194
>gi|297850452|ref|XP_002893107.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338949|gb|EFH69366.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 571
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+ + G Y+G+Q TIEGELE ALF AG + E++ + WARS+RT
Sbjct: 60 VAIVFAFCGVGYQGMQKNP---GAKTIEGELEEALFHAGAVPEADRNKPRNYEWARSART 116
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
DKGV ++ ++ + + P + +R+N+ LP I+VF SF ++
Sbjct: 117 DKGVSAVGQVVSGRFYVDPPGF---------VERLNSKLPDQIRVFGYKRVAPSFSSKKL 167
Query: 200 CNLRKYSYLLP 210
C+ R+Y YL+P
Sbjct: 168 CDRRRYVYLIP 178
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + + G +++ + G+SFMLHQIRKM+G AVAV R P ++ + K
Sbjct: 362 RYILSFNANTVINLDGKDFIKCEVVGQSFMLHQIRKMIGLAVAVMRNYAPESLIETAFKK 421
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
RI +P+AP L+L F+
Sbjct: 422 DVRINVPMAPEVGLYLDECFFT 443
>gi|389745603|gb|EIM86784.1| pseudouridine synthase [Stereum hirsutum FP-91666 SS1]
Length = 613
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 15/141 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ AL +G+ GT G+Q+Q + + TIEG L AL +AG + + N + K+ R+
Sbjct: 165 KRQCALLIGFCGTGCNGMQIQPN---VRTIEGVLFDALVRAGAVSKDNADDPVKVNLGRA 221
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ +K+ +IP G+ D+ +VN LP I+++ + Q S
Sbjct: 222 ARTDAGVHAAGNVVSIKIITQIP---------GVPDVVAKVNELLPPEIRLWGYVRVQNS 272
Query: 194 FDPRRECNLRKYSYLLPAEVI 214
F+ R C+ RKY+Y P+ ++
Sbjct: 273 FNARLSCDSRKYTYFFPSYLL 293
>gi|302818082|ref|XP_002990715.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
gi|300141453|gb|EFJ08164.1| hypothetical protein SELMODRAFT_132245 [Selaginella moellendorffii]
Length = 318
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 20/180 (11%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K AL V Y G Y+G MQR+ +L TIEG LE AL +AG I SN + + W R++
Sbjct: 2 EKAALFVVYCGAGYKG--MQRNPGAL-TIEGVLEEALGRAGAI-GSNGCSRNWLDWKRAA 57
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDK V +L ++ ++ + PD L R N LP +I++ F +
Sbjct: 58 RTDKEVSALGQVVSARLYLTPD----------LVHRTNEFLPGSIQLLGFKRVPDDFSAK 107
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD---FNAILNEFEG-EHPFHNYTERSK 253
+ C+ R+Y Y+LP V + + + + D FN IL F G +H FHN++ R +
Sbjct: 108 KMCDSRRYEYVLP--VFAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVR 165
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I + SFM +QIRKMVG AVAV R + P + +L +++P AP EV L
Sbjct: 191 FVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALRSEVDVIVPTAP-EVGLLLD 249
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
SF + PE + E + + EF + V ++
Sbjct: 250 ESFYHDYNAAASTPEESRIALGLEFGEAMQEFKSKVIYAHIA 291
>gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Acyrthosiphon pisum]
Length = 441
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 97/205 (47%), Gaps = 34/205 (16%)
Query: 65 PNSSDDK--------WEP-VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF 115
P S DD+ EP V++KK A+ + Y G Y GLQ + + T+E EL AL
Sbjct: 44 PLSEDDENIVTKKLCIEPRVKRKKCAILLAYSGLGYLGLQRNK---GVKTVEEELLLALK 100
Query: 116 KAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
I + + +Q + + R++RTDKGV +L +I L + P D K + +N
Sbjct: 101 SKNLITDEGFEQIQTMQFQRAARTDKGVSALRQIISLLL--PEDVDK---------QVIN 149
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSY------LLPAE-VIGINSQLTAAEIDSH 228
LP I+V I + F+ + C+ R YSY PAE I + ++ A ID
Sbjct: 150 TALPEQIRVLDIRRVTKGFNSKNSCDGRTYSYTCPTFAFAPAETTIDFSYRIDATVIDR- 208
Query: 229 ISDFNAILNEFEGEHPFHNYTERSK 253
N ++ F G H +HNYT + K
Sbjct: 209 ---INEVVKSFLGCHNYHNYTSKKK 230
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R + S C K + G + + + G+SFMLHQIRKMVG +A+ R + D++ + +
Sbjct: 238 RYMVSFYCDKPFEKDGVELISLYVRGQSFMLHQIRKMVGVIIAICRGVAKHDVIERAW-Q 296
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
R+ LP+AP L L + + M ++ E+ V EF LP +
Sbjct: 297 PDRLDLPIAPGLGLVLEEVHYD-KYNGKFGNDGMHERLDFVELNDQVSEFRAKYILPTII 355
Query: 485 KFLDATKSPWTEWIENL 501
K ++ +S W+E L
Sbjct: 356 K-VEKEESSMQLWLEQL 371
>gi|212532769|ref|XP_002146541.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
gi|210071905|gb|EEA25994.1| tRNA pseudouridine synthase, putative [Talaromyces marneffei ATCC
18224]
Length = 571
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y G+Q+ E TIEG+L A AG I ++N + +K + R
Sbjct: 74 KKKVAVMIGYSGTGYHGMQLSPTE---KTIEGDLFAAFVAAGAISKANAADPKKSSLVRC 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD+GVH+ ++ LK+ + +DP D+ +++N +L I+V+ + F
Sbjct: 131 ARTDRGVHAAGNVVSLKLIV------EDP---DIVQKINDNLSPQIRVWGYETVTKGFSC 181
Query: 197 RRECNLRKYSYLLP 210
+ C+ R Y YL+P
Sbjct: 182 YQLCDSRMYEYLIP 195
>gi|19113277|ref|NP_596485.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74676179|sp|O94295.1|PUS2_SCHPO RecName: Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|3850107|emb|CAA21896.1| tRNA pseudouridine synthase Pus2 (predicted) [Schizosaccharomyces
pombe]
Length = 451
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K ++ + +GY G Y G+Q+ + L TIEG++ L K G ++ +N + + + AR+
Sbjct: 38 KVRIIILLGYSGYGYHGIQIN---NPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARA 93
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAHLPRNIKVFSILPSQRSFD 195
+RTDKGVH+L +I L + + D P I L K +N L I+V+S+ P+ + F+
Sbjct: 94 ARTDKGVHTLRNLISLNLFV------DKPLDISLLKTELNEALCSQIRVWSVFPAPKYFN 147
Query: 196 PRRECNLRKYSYLLPA 211
PR C R Y YL+P+
Sbjct: 148 PRISCESRTYEYLIPS 163
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 357 DKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRD 416
D S S++R I S +CG + ++ ++I G SFML+QIRKM+ + + R P
Sbjct: 298 DSTSPSNYRFIESVTCGTPFVYENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTG 357
Query: 417 ILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
++ + + + + +P VL L+ FS
Sbjct: 358 LIDKAFDPNITMNISKSPGHVLLLKDIKFS 387
>gi|403176397|ref|XP_003335055.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172233|gb|EFP90636.2| hypothetical protein PGTG_16662 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 551
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P + D + K++VA+ +GY G Y+G Q+ TIEG L A +AG I + N
Sbjct: 29 PTTIDGALSRLPKRRVAIMIGYYGRGYQGSQIN---PGTKTIEGTLFNAFVRAGCITQDN 85
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEI-PPDAWKDDPYGIDLAKRVNAHLPRNIK 183
+ K+ R++RTD V + +I LK+ + PP+ +D + + +N LP ++K
Sbjct: 86 STHPNKVGLQRAARTDANVSACCNLISLKLILNPPEIGQDK----RMDQHINRFLPSDMK 141
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPA 211
++ I+ Q SF+PR C+ R Y Y LP
Sbjct: 142 IWEIIRVQNSFNPRSFCDSRVYEYSLPT 169
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I+ G+SFMLHQIRKM+G V V R P I+ L ++ +P AP L LR
Sbjct: 312 WISITFHGQSFMLHQIRKMIGLLVLVCRTRTPVSIIK-QLYGPRKVSIPKAPGIGLILRK 370
Query: 443 NSF 445
+F
Sbjct: 371 LNF 373
>gi|387196937|gb|AFJ68784.1| trna pseudouridine synthase, partial [Nannochloropsis gaditana
CCMP526]
Length = 283
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GTD++G+QM TIE ELE A+++AG I+E+N+G+LQKI W+RS RTDKGV
Sbjct: 3 IGYCGTDFQGMQMN---PGAITIEAELEKAMYEAGCIKEANFGSLQKIGWSRSGRTDKGV 59
Query: 144 HSLATMICLKMEI 156
H+ A ++ K+ +
Sbjct: 60 HAAAQVVGCKLHV 72
>gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis]
gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis]
Length = 409
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFDQVQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV S A IC +++P + +DL + NA LP I++F +
Sbjct: 119 IACFQRAARTDKGV-SAARQIC-SVKLPEE--------LDL-EAFNADLPEQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + S +E D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLP--TVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTK 225
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 226 NFHNFTSKKNF 236
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA F F+ S + G +V + + G+SFMLHQIRKMVG A+A+ R L
Sbjct: 240 SAKRFIMAFTSS-EPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLE 298
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+L + R+ LP+AP L L
Sbjct: 299 RALTEE-RLDLPMAPGLGLVL 318
>gi|313223412|emb|CBY40401.1| unnamed protein product [Oikopleura dioica]
Length = 307
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 22/181 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ + Y G +Y GLQ + + TIE + AL A + + + +K A+
Sbjct: 80 KKKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSC 139
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGV ++ + LK +IP +L + VNAHLP +I++ S + F
Sbjct: 140 SRTDKGVSAIGNVASLKCKIPK----------NLCELVNAHLPDDIRLTSFEQVTKGFCA 189
Query: 197 RRECNLRKYSYLLPAEVIGINS--------QLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
++ C R YSY P G +++A +++ +L ++ G +HN+
Sbjct: 190 KKRCTHRTYSYYCPTICFGSKEDWDRPSSFRISAEKLEG----VRELLKKYIGTRSYHNF 245
Query: 249 T 249
T
Sbjct: 246 T 246
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVA 407
YVE+ + G+SFM+HQIRKMVG +A
Sbjct: 277 YVELRVVGQSFMIHQIRKMVGLIIA 301
>gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
Length = 409
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 97/191 (50%), Gaps = 22/191 (11%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFDQVQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV S A IC +++P + +DL + NA LP I++F +
Sbjct: 119 IACFQRAARTDKGV-SAARQIC-SVKLPEE--------LDL-EAFNADLPEQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + S +E D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLP--TVAFASCEAESEQDTFRITPELLDRVKETLKLYEGTK 225
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 226 NFHNFTSKKNF 236
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA F F+ S + G +V + + G+SFMLHQIRKMVG A+A+ R L
Sbjct: 240 SAKRFIMAFTSS-EPFQSPQGVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAITLD 298
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+L + R+ LP+AP L L
Sbjct: 299 RALTEE-RLDLPMAPGLGLVL 318
>gi|365760751|gb|EHN02448.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 336
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 13/136 (9%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+RK K + +GY G+ Y G+Q TIEGE+ L + G I E N +K ++
Sbjct: 13 LRKHKAVMLLGYRGSGYYGMQYNPPHR---TIEGEILAKLLEVGAISEKNSSAPKKNSFM 69
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGVH++ ++ LK+ + D ++NA LP I+V+ I P+ ++F
Sbjct: 70 AAARTDKGVHAMLNLLSLKISLQEDT----------VAKLNAALPPEIRVWGIQPANKNF 119
Query: 195 DPRRECNLRKYSYLLP 210
+ R C R Y YL+P
Sbjct: 120 NARSACGSRWYEYLVP 135
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++ + I G+SFMLHQIR+MV AV V R LP ++ A R +P AP++ L L
Sbjct: 265 WISVRIHGQSFMLHQIRRMVALAVIVVRCQLPPSLVRNHFAAGVRKYIPRAPAQGLLL 322
>gi|313231689|emb|CBY08802.1| unnamed protein product [Oikopleura dioica]
Length = 443
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 14/177 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ + Y G +Y GLQ + + TIE + AL A + + + +K A+
Sbjct: 80 KKKVAILISYCGKNYHGLQHNPGDDKVDTIEKRVFQALVAAKVVYSNVINDRKKCAYQSC 139
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGV ++ + LK +IP +L + VNAHLP +I++ S + F
Sbjct: 140 SRTDKGVSAIGNVASLKCKIPK----------NLCELVNAHLPDDIRLTSFEQVTKGFCA 189
Query: 197 RRECNLRKYSYLLPAEVIGINSQL---TAAEIDSH-ISDFNAILNEFEGEHPFHNYT 249
++ C R YSY P G ++ I + + +L ++ G +HN+T
Sbjct: 190 KKRCTHRTYSYYCPTICFGSKEDWDRPSSFRISTEKLEGVRELLKKYIGTRSYHNFT 246
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 15/159 (9%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
YVE+ + G+SFM+HQIRKMVG +A D + + V P AP L LR
Sbjct: 277 YVELRVVGQSFMIHQIRKMVGLIIARAGNHCQDDHWERAFQRPFEDV-PKAPGNGLVLRQ 335
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLE 502
+ V + T + + +E + +D+F T LP + K +D + EW++ L+
Sbjct: 336 VHYDVYNKDYGT--DKRRALEWTDKQNDMDDFATKNILPVIFK-MDTEEESMVEWLKTLQ 392
Query: 503 --KFTSIPNEQLDEVRNAWQLWKEKRFESKTIVESAISV 539
FT E + W+++ FE K ++ + V
Sbjct: 393 VHDFTGARAE---------KQWEKQEFERKEALKRPLKV 422
>gi|123483294|ref|XP_001323995.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121906870|gb|EAY11772.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 346
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 106/233 (45%), Gaps = 33/233 (14%)
Query: 60 LTRPTPNSSDDKWEPVRKKK-VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
LT P P S +++ +K V + Y+GT Y GLQ + TI+ +L L K+G
Sbjct: 14 LTTPLPES--NRYLITKKPACVVIYFRYIGTGYHGLQYNE---KVRTIDSDLFEGLEKSG 68
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLK-MEIPPDAWKDDPYGIDLAKRVNAH 177
+ E +Y KIAW +SRTD GVH+ +IC K EI D + + +N +
Sbjct: 69 ILPEGSYKRRGKIAWNEASRTDAGVHACGQLICFKSYEIC------DMECSQIPELINKN 122
Query: 178 LPRN--IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF--N 233
LP + IK+ S L + F + RKY+YLLP V + D D+
Sbjct: 123 LPSDSTIKIMSCLCTNSPFPVKDFATHRKYNYLLPLHVF--------SSTDPDHLDYLRQ 174
Query: 234 AILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEE 286
I F G+H FHNYT + KT + ++R D F V GEE
Sbjct: 175 KICPLFIGQHNFHNYTNGTP------KTYKGAQRFIT--DFTFGDVFTINGEE 219
>gi|302686228|ref|XP_003032794.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
gi|300106488|gb|EFI97891.1| hypothetical protein SCHCODRAFT_82025 [Schizophyllum commune H4-8]
Length = 561
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 14/141 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ A+ +G+ G+ Y G+Q+Q+ TIE EL A + G + N + K+ R+
Sbjct: 129 KRMCAVLIGFCGSGYNGMQIQKP--PAKTIENELFDAFVRVGAVSRDNSDDPVKVGLKRA 186
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ LK+ IP G+ DL RVN LP I+++ S
Sbjct: 187 ARTDAGVHAAGNLVSLKLITAIP---------GVPDLVARVNEELPPQIRMWGFTRVTNS 237
Query: 194 FDPRRECNLRKYSYLLPAEVI 214
F+ R+ C+ RKY+Y P+ ++
Sbjct: 238 FEARQMCDSRKYTYFFPSYML 258
>gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta]
gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta]
Length = 410
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D E +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPAERIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV S A +C +++P D +DL + NA LP+ I++F +
Sbjct: 119 ISCFQRAARTDKGV-SAARQVC-SVKLPED--------LDL-EAFNADLPQQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTMAFAPFEEKVEDLHDTFQISPELLQKVKETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKSF 238
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L
Sbjct: 261 GIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLV 319
Query: 440 L 440
L
Sbjct: 320 L 320
>gi|261190138|ref|XP_002621479.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239591307|gb|EEQ73888.1| tRNA pseudouridine synthase [Ajellomyces dermatitidis SLH14081]
Length = 605
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 108/424 (25%), Positives = 172/424 (40%), Gaps = 91/424 (21%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G YR + TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGI-YRS-------PTEKTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 171
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ ++ LK+ I D+ D+ +++N L I+V+ I + +SF
Sbjct: 172 ARTDKGVHAAGNVVSLKL-IVEDS--------DIVQKINEQLSPQIRVWGIEITNKSFSS 222
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS---- 252
C+ R Y YL+P T+ + + + N+ EG Y +R
Sbjct: 223 YHLCDSRIYEYLIPTHCFLPPHPSTS--LGQKLVEIAEQENDLEG------YKQRQAEVA 274
Query: 253 --------KY-----RRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEE 299
KY R P T KRA K + G +S GE+
Sbjct: 275 TYWKEVDEKYIQPILERLPEVTRNRVKRALIVKS------------DTGPVDSSDSQGEQ 322
Query: 300 DLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWL-------YE 352
L E DD + + + +D + A + ++ +IRA +L
Sbjct: 323 KLNPSNE--GDDAPTSNETSIQTNENKDTSAEDAQTVTTNDAIRMIRAAYLDAKRAYRIP 380
Query: 353 TDEADKLSAS-------------HFRKIF-SCSCGKLEKSL----------GFGYVEISI 388
+ D+++ + +K F S +L KS G ++ + +
Sbjct: 381 KERMDRINDALGMYVGTRNFHNYTIQKSFRDASAKRLIKSFKISRDPLIINGTEWLSLKV 440
Query: 389 SGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA---NSF 445
G+SFM+HQIRKMV V R + + H +I +P AP L L +S+
Sbjct: 441 HGQSFMMHQIRKMVAMVALVVRCGCDIQRIPETYEDH-KIAIPKAPGLGLLLERPIFDSY 499
Query: 446 SVRT 449
+ RT
Sbjct: 500 NKRT 503
>gi|312091557|ref|XP_003147023.1| hypothetical protein LOAG_11456 [Loa loa]
Length = 236
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 14/154 (9%)
Query: 64 TPNSSDDKWEPVRKKK-----VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
+ ++SD EPVRK + AL + Y G Y G+Q+Q+D T+EGEL A+ K G
Sbjct: 83 SDSASDVNGEPVRKSRRKEYSYALLLAYQGKKYNGMQVQKD---FPTVEGELFKAMAKCG 139
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAH 177
I E + + + A+ R++RTD+ V S A +C M + P+ + Y + A ++NA
Sbjct: 140 YISEDDILSPVRFAFQRAARTDRSV-SAARQMC-SMRLAPE---NHEYFLKTASDKLNAQ 194
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
LP I+V + + RSF + C+ R YSY LP+
Sbjct: 195 LPEEIRVMGVRRATRSFKAHKNCDKRTYSYTLPS 228
>gi|302810046|ref|XP_002986715.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
gi|300145603|gb|EFJ12278.1| hypothetical protein SELMODRAFT_124462 [Selaginella moellendorffii]
Length = 318
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K AL V Y G Y+G MQR+ + +TIEG LE AL +AG I SN + + W R++
Sbjct: 2 EKAALFVVYCGAGYKG--MQRNPGA-ATIEGVLEEALVRAGAI-GSNGCSRNWLDWKRAA 57
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDK V +L ++ ++ + PD L R N LP +I++ F +
Sbjct: 58 RTDKEVSALGQVVSARLYLTPD----------LVHRTNEFLPGSIRLLGFKRVPDDFSAK 107
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD---FNAILNEFEG-EHPFHNYTERSK 253
+ C R+Y Y+LP + + + + + D FN IL F G +H FHN++ R +
Sbjct: 108 KMCASRRYEYVLP--IFAFDPRTGDDLEEEFLFDFERFNQILGRFLGTDHSFHNFSWRVR 165
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I + SFM +QIRKMVG AVAV R + P + +L +++P AP EV L
Sbjct: 191 FVRIIVLARSFMAYQIRKMVGLAVAVMRDIAPVTTINRALRSEVDVIVPTAP-EVGLLLD 249
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
SF + PE + E + + EF + V ++
Sbjct: 250 ESFYHDYNAAASTPEESRIALGLEFGEAMQEFKSKVIYAHIA 291
>gi|84997902|ref|XP_953672.1| tRNA pseudouridine synthase [Theileria annulata]
gi|65304669|emb|CAI72994.1| tRNA pseudouridine synthase, putative [Theileria annulata]
Length = 478
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 89/198 (44%), Gaps = 36/198 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHS-----LSTIEGELETALFKAGGIRESNYGNLQKI 131
K K + GY+GT Y G Q Q + + + T+EG LE LF+ G I E+ K+
Sbjct: 68 KTKYVIAFGYLGTGYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTHKL 127
Query: 132 AWARSSRTDKGVHSLATMIC----LKME-IPPD--------------AWKDDPYGIDL-- 170
++ SRTDKGVH+ T + ++ME +P D + D ++L
Sbjct: 128 QMSKCSRTDKGVHAACTYLGGRFNIEMEDVPEDHVPQVNNHSEINNSSKPDTSDNVELQS 187
Query: 171 ----------AKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
+R+NA LP +I+ F I + FD R C+ RKY Y++P ++ L
Sbjct: 188 DGKLSKEEKFVQRLNAALPEDIRCFKIQRVTKGFDARSLCSKRKYEYIIPEWLLSKKFVL 247
Query: 221 TAAEIDSHISDFNAILNE 238
E + H + I E
Sbjct: 248 PNEEHEKHFRNLEVIFEE 265
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRAN 443
V+I I G+SF+ +QIRKM+ A+ V + P++ + SL K + + L PSE L L
Sbjct: 346 VKILIVGQSFLYNQIRKMISLALQVYLGIAPKNSVEFSLNKSHFLNINLVPSEGLILHHP 405
Query: 444 SFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEK 503
F PE+ +E +++ V+ F PEV K +++ W W+EN+ K
Sbjct: 406 YFDSYNMNRCNPPEV-PYIEYKDVKTKVEGFKNKYIYPEVKKSMES--DLWEGWLENILK 462
Query: 504 F 504
+
Sbjct: 463 Y 463
>gi|401837317|gb|EJT41261.1| PUS2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 389
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 73/136 (53%), Gaps = 13/136 (9%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+RK K + +GY G+ Y G+Q TIEGE+ L + G I E N +K ++
Sbjct: 13 LRKHKAVMLLGYRGSGYYGMQYNPPHR---TIEGEILAKLLEVGAISEKNSSAPKKNSFM 69
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGVH++ ++ LK+ + D ++NA LP I+V+ I P+ ++F
Sbjct: 70 AAARTDKGVHAMLNLLSLKISLQEDT----------VAKLNAALPPEIRVWGIQPANKNF 119
Query: 195 DPRRECNLRKYSYLLP 210
+ R C R Y YL+P
Sbjct: 120 NARSACGSRWYEYLVP 135
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ + I G+SFMLHQIR+MV AV V R LP ++ A R +P AP++ L L
Sbjct: 265 WISVRIHGQSFMLHQIRRMVALAVIVVRCQLPPSLVRNHFAAGVRKYIPRAPAQGLLLEG 324
Query: 443 NSF 445
F
Sbjct: 325 PVF 327
>gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis]
gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis]
Length = 401
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQVQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + N LP I++F +
Sbjct: 119 IACFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNKDLPEQIRIFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLP----AEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
+ F+ + +CN R Y+Y LP A + Q T + +A L +EG F
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTIAFAAFDDQHDQETYRIPIERLEKVSATLKLYEGTKNF 227
Query: 246 HNYTERSKY 254
HN+T + +
Sbjct: 228 HNFTSKKNF 236
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA F F+CS L +V + + G+SFMLHQIRKMVG A+A+ R L
Sbjct: 240 SAKRFIMSFTCSTPFLSPQ-SVEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLE 298
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+L + R+ LP+AP L L
Sbjct: 299 RALTEE-RLDLPMAPGLGLVL 318
>gi|156405521|ref|XP_001640780.1| predicted protein [Nematostella vectensis]
gi|156227916|gb|EDO48717.1| predicted protein [Nematostella vectensis]
Length = 300
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKK AL + Y G Y G+Q+ + TIE +L AL +A I + L K+++ R
Sbjct: 1 KKKCALLISYCGVGYAGMQINP---GVRTIEEQLINALHQAEVITDDAKECLGKMSFQRC 57
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ L ++N+ LP I++F ++ + ++FD
Sbjct: 58 ARTDKGVSAARQVVSLKISALSS----------LLPKINSFLPPEIRIFGMIKTTKAFDC 107
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKY 254
++ C+ R Y YL P ++ E I + N L+ ++G +HN+T K+
Sbjct: 108 KQNCSARTYEYLTPTFAFA-KDYVSRTE---KIEEINKALSNYKGTKNYHNFTSGKKF 161
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S CGK + G +V +++ G+SF+LHQIRKM+G +AV R + P L
Sbjct: 168 RYIISFKCGKPFERNGREFVVLTVKGQSFVLHQIRKMIGLVIAVVRGVAPSSTFDL---- 223
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRP----GVTRPEMQTMVESEEILKMVDEF 474
I +P AP+ L L F + G+ P + + +EE+ K ++F
Sbjct: 224 ---IDIPKAPALGLVLDTVHFDAYNKKFGNDGLHEP-LDWQLINEEVYKFKEDF 273
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 22/185 (11%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
+E K+ VAL+ Y+G DY GL +Q+D+ L TIEG L A+ K I N + +
Sbjct: 81 FEKYHKRHVALKFCYLGWDYNGLALQKDKTPLPTIEGILLEAMKKCKFIPSMNPKDFK-- 138
Query: 132 AWARSSRTDKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFS 186
++R RTDKGV +L +I L M E+PP D D I+ +N LP I++ +
Sbjct: 139 -FSRCGRTDKGVSALNQIISLDMRSELPPAEQVDANFDHKEINYTAILNQILPPAIRITA 197
Query: 187 I-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
+ L + FD R C R Y Y + + I AA+ FEGE+ F
Sbjct: 198 VCLNPPKDFDARFNCISRHYKYFFKLDNLDITLMREAAK-------------HFEGENDF 244
Query: 246 HNYTE 250
N+ +
Sbjct: 245 RNFCK 249
>gi|195055095|ref|XP_001994456.1| GH16145 [Drosophila grimshawi]
gi|193892219|gb|EDV91085.1| GH16145 [Drosophila grimshawi]
Length = 395
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 97/194 (50%), Gaps = 25/194 (12%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 50 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHNWITEDSFKQVQ 106
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
++ R++RTDKGV S A +C +++P + +DL N LP I++F +
Sbjct: 107 IASFQRAARTDKGV-SAARQVC-SIKLPDE--------LDLVA-FNKDLPETIRLFGVER 155
Query: 190 SQRSFDPRRECNLRKYSYLLPA-EVIGINSQLTAAEIDSHISDFNAILNE--------FE 240
+ F+ + +CN R Y+Y LP+ G N Q + D L+E +E
Sbjct: 156 VTKGFNAKEQCNARTYTYTLPSIAFAGCNEQQN--QQDQATFRLTPALHEQICETLKLYE 213
Query: 241 GEHPFHNYTERSKY 254
G FHN+T + +
Sbjct: 214 GTKNFHNFTSKKNF 227
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V + + G+SFMLHQIRKMVG A+A+ R R L +L + R+ LP+AP L
Sbjct: 250 GIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTRITLERALTE-ERLDLPMAPGLGLV 308
Query: 440 L 440
L
Sbjct: 309 L 309
>gi|11464733|gb|AAG35307.1| pseudouridine synthase 1 [Mus musculus]
Length = 411
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 35/208 (16%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 42 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 101
Query: 130 KIAWARSSRTDK------------------GVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
K+++ R +RTDK GV + ++ LK+ W D D+
Sbjct: 102 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKV------WLID----DIL 151
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDS 227
++N+HLP +I++ + F+ + +C+ R Y Y+LP + E
Sbjct: 152 DKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAE 211
Query: 228 HISDFNAILNEFEGEHPFHNYTERSKYR 255
+ N +L ++G H FHN+T + R
Sbjct: 212 TLQQVNRLLACYKGTHNFHNFTSQKGPR 239
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 245 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 304
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 305 -EKVDVPKAPGLGLVLERVHF 324
>gi|393221799|gb|EJD07283.1| pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 502
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 20/156 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ AL +G+ G+ Y+G+Q+Q E TIEG L AL AG + + N + K+ R+
Sbjct: 57 KRLCALLIGFCGSGYKGMQIQPSE---KTIEGVLFKALVNAGAVSKDNADDPVKVGLQRA 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRS 193
+RTD GVH+ ++ +K+ +P GI DL +R+N LP I+++S Q S
Sbjct: 114 ARTDAGVHAAGNVVSMKIITHVP---------GIPDLVQRINEELPPEIRLWSFQRVQNS 164
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI 229
F+ R +R+Y+Y P+ ++ I + T+A S I
Sbjct: 165 FNAR----IRRYTYFFPSYLL-IPPKPTSAFYQSFI 195
>gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L + Y G Y G+Q TIE EL AL +G I +++ +++K+++ R
Sbjct: 54 KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDELVQALVLSGCIPDNHAEDMKKMSFQRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGV + ++ LK+ W D ++ +++N +LP +I++ + F+
Sbjct: 114 ARTDKGVSAAGQVVSLKI------WLID----NVVEKINENLPSHIRILGLKRVTGRFNS 163
Query: 197 RRECNLRKYSYLLPA--------EVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+ C+ R YSY LP E N +L+ ++ N +L ++G FHN+
Sbjct: 164 KNSCDARTYSYTLPTFAFSHKDKEAQDENFRLSQETLNR----VNELLALYKGTRNFHNF 219
Query: 249 T 249
T
Sbjct: 220 T 220
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G I + G+SFM+HQIRKM+G +AV + P I+ S +
Sbjct: 232 RYIMEMHCEPPFQQGGLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIERSWGE 291
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTR 450
++ +P AP L L F R
Sbjct: 292 -EKVDIPKAPGLGLVLERVHFEKYNR 316
>gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644398|emb|CCD60867.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 413
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 45 PASSS--SKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
P+S S +S PS S+ TRP +++ A+ + Y G Y G MQR
Sbjct: 15 PSSKSIVDESVPSFSNASTRP------------KRRNNAILLMYSGWGYYG--MQRCP-V 59
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
TIEGEL ALF G + +++ + R+S+TDK V +L + +++ K
Sbjct: 60 FPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQVCSMQL-------K 112
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
+D DL ++N LP NI+V I+ R F C R Y YLLP + S T+
Sbjct: 113 ED---TDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPTFAL---SPATS 166
Query: 223 AEIDS----------HISDFNAILNEFEGEHPFHNYT 249
+ DS I+ N +L +++G H F+N+T
Sbjct: 167 SLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFT 203
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
Y I I+G+SFMLHQIRKM+G A+AV R + + +K +RI +P AP L L
Sbjct: 233 YTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQ 291
Query: 443 NSFS 446
FS
Sbjct: 292 VDFS 295
>gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644397|emb|CCD60866.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 428
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 102/217 (47%), Gaps = 40/217 (18%)
Query: 45 PASSS--SKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS 102
P+S S +S PS S+ TRP +++ A+ + Y G Y G MQR
Sbjct: 30 PSSKSIVDESVPSFSNASTRP------------KRRNNAILLMYSGWGYYG--MQRCP-V 74
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
TIEGEL ALF G + +++ + R+S+TDK V +L + +++ K
Sbjct: 75 FPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSALGQVCSMQL-------K 127
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
+D DL ++N LP NI+V I+ R F C R Y YLLP + S T+
Sbjct: 128 ED---TDLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIYDYLLPTFAL---SPATS 181
Query: 223 AEIDS----------HISDFNAILNEFEGEHPFHNYT 249
+ DS I+ N +L +++G H F+N+T
Sbjct: 182 SLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFT 218
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
Y I I+G+SFMLHQIRKM+G A+AV R + + +K +RI +P AP L L
Sbjct: 248 YTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQ 306
Query: 443 NSFS 446
FS
Sbjct: 307 VDFS 310
>gi|148688057|gb|EDL20004.1| pseudouridine synthase 1, isoform CRA_b [Mus musculus]
Length = 452
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 35/208 (16%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 83 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 142
Query: 130 KIAWARSSRTDK------------------GVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
K+++ R +RTDK GV + ++ LK+ W D D+
Sbjct: 143 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKV------WLID----DIL 192
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDS 227
++N+HLP +I++ + F+ + +C+ R Y Y+LP + E
Sbjct: 193 DKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAE 252
Query: 228 HISDFNAILNEFEGEHPFHNYTERSKYR 255
+ N +L ++G H FHN+T + R
Sbjct: 253 TLQQVNRLLACYKGTHNFHNFTSQKGPR 280
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 286 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 345
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 346 -EKVDVPKAPGLGLVLERVHF 365
>gi|70906468|ref|NP_001020732.1| tRNA pseudouridine synthase A, mitochondrial isoform 1 [Mus
musculus]
Length = 441
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 35/208 (16%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDK------------------GVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
K+++ R +RTDK GV + ++ LK+ W D D+
Sbjct: 132 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKV------WLID----DIL 181
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDS 227
++N+HLP +I++ + F+ + +C+ R Y Y+LP + E
Sbjct: 182 DKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAE 241
Query: 228 HISDFNAILNEFEGEHPFHNYTERSKYR 255
+ N +L ++G H FHN+T + R
Sbjct: 242 TLQQVNRLLACYKGTHNFHNFTSQKGPR 269
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 275 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 334
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 335 -EKVDVPKAPGLGLVLERVHF 354
>gi|149756822|ref|XP_001493954.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Equus
caballus]
Length = 351
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 93/174 (53%), Gaps = 23/174 (13%)
Query: 93 GLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL 152
G+Q TIE +L +AL ++G I E++ +++K+++ R +RTDKGV + ++ L
Sbjct: 27 GMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSL 86
Query: 153 KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA- 211
K+ W D D+ +++N+HLP +I++ + F+ + +C+ R Y Y+LP
Sbjct: 87 KV------WLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYFYMLPTF 136
Query: 212 -------EVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+V +LTA + S N +L ++G H FHN+T + K R+P
Sbjct: 137 AFAHKDRDVQDETYRLTAETLQS----VNRLLACYKGTHNFHNFTSQ-KGPREP 185
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM HQIRKMVG VA+ + P +L S +
Sbjct: 189 RYILDMYCEEPFVREGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPESVLARSWGE 248
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
+++ +P AP L L F
Sbjct: 249 -AKVDVPKAPGLGLVLERVHF 268
>gi|242001376|ref|XP_002435331.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215498661|gb|EEC08155.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 442
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 17/193 (8%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
++S+ + + KK+AL + Y G DY G MQR+ + TIE +L A++K I + +
Sbjct: 59 SNSESQLGKAKAKKMALCMSYNGKDYLG--MQRNPGT-KTIEDDLLQAMYKGDLILKEHV 115
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
Q + + R++RTDKGV ++ ++ LK+ P + ++ + ++N+HL I+V
Sbjct: 116 DVPQAMKFQRAARTDKGVSAVRQIVSLKL--PTNLTVEE-----MVDKINSHLVDQIRVI 168
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE-----IDSHISDFNAILNEFE 240
I + R F+ + C+ R Y+Y+LP + AE + I + N +L ++
Sbjct: 169 DIKRTTRGFNCKNSCDSRTYTYVLP--TFAFAPPESPAEESYRITEERIGEVNNVLALYK 226
Query: 241 GEHPFHNYTERSK 253
G H +HN+T K
Sbjct: 227 GCHNYHNFTSGKK 239
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLS 421
S R I S C + +V++ I G+SFMLHQIRKMVG +A+ R + +
Sbjct: 244 SAMRYIISAECAQPFVQGDQEFVQVQIKGQSFMLHQIRKMVGLVIAIMRGCTKETTIRRA 303
Query: 422 LAKHSRIVLPLAPSEVLFLRANSFSVRTR--PGVTRPEMQTMVESEEILKMVDEFYTSVT 479
++ LP+AP+ L L + + G E T E ++I++ E + T
Sbjct: 304 WGP-EKLDLPIAPALGLMLEEVHYDRYNKRYGGDGLHEPLTWEEKQDIIQSFKEKHIYPT 362
Query: 480 LPEVSKFLDATKSPWTEWIENL 501
+ E K KS T W+ENL
Sbjct: 363 ILETEK---NEKSMLT-WMENL 380
>gi|71033963|ref|XP_766623.1| tRNA pseudouridine synthase [Theileria parva strain Muguga]
gi|68353580|gb|EAN34340.1| tRNA pseudouridine synthase, putative [Theileria parva]
Length = 475
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 97/256 (37%), Gaps = 81/256 (31%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHS-----LSTIEGELETALFKAGGIRESNYGNLQ 129
V K K + GYVGT Y G Q Q + + + T+EG LE LF+ G I E+
Sbjct: 66 VPKTKYVISFGYVGTAYHGYQKQVEYKTGEMDKVKTVEGTLENCLFRIGAINEAFRNMTH 125
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK----------------- 172
K+ ++ SRTDKGVH+ T + + I + DD + AK
Sbjct: 126 KLQMSKCSRTDKGVHAACTYLGGRFNIDVEDLSDDV--VSQAKNHPSESNGELSNNLEST 183
Query: 173 -------------RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG---- 215
R+N+ LP +I+ F I + FD R C+ RKY Y++P ++
Sbjct: 184 KDQKLSNEDKFVLRLNSVLPEDIRCFKIQRVTKGFDARTLCSKRKYEYIIPEWILSKKFV 243
Query: 216 --------------------------------------INSQLTAAEIDSHISDFNAILN 237
+ + EID ILN
Sbjct: 244 VPNEDHENLFRNLELFFEENLKTRDTIKLSKLNESLYEVKGEYEKTEIDH--KRLEEILN 301
Query: 238 EFEGEHPFHNYTERSK 253
++G H FHN+T + K
Sbjct: 302 FYQGTHSFHNFTVKQK 317
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRAN 443
V+I I G+SF+ +QIRKM+ A+ V K+ P++ L SL K + + L PSE L L
Sbjct: 343 VKILIVGQSFLYNQIRKMISLALQVYLKIAPKNSLEFSLNKSHILNINLVPSEGLILHHP 402
Query: 444 SFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEK 503
F PE+ +E +++ V+EF PEV + +D+ W W+E + K
Sbjct: 403 YFDHYNTNRCNPPEV-PYIEYKDVKPKVEEFKREHIYPEVKRSIDS--DLWEGWLETILK 459
Query: 504 F 504
+
Sbjct: 460 Y 460
>gi|317033787|ref|XP_001395447.2| tRNA pseudouridine synthase [Aspergillus niger CBS 513.88]
Length = 517
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 12/118 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ E TIEGEL A AG I ++N + +K + R
Sbjct: 47 KKKVAVLLGYSGTGYKGMQLSETE---KTIEGELFAAFVAAGAISKANATDPKKSSLVRC 103
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+RTDKGVH+ ++ LK+ + D D+ +++N L I+V+ IL + +SF
Sbjct: 104 ARTDKGVHAAGNIVSLKLIVEDD---------DIIQKINEKLSSQIRVWDILVTNKSF 152
>gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae]
gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae]
Length = 410
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQVQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP I++F +
Sbjct: 119 IACFQRAARTDKGVSAARQVCSVKL----------PDELDL-EAFNADLPDQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + + D++ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTVAFASSEEKIEDLHDTYRITPELLEKVRETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKNF 238
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V + + G+SFMLHQIRKMVG A+A+ R + L +L + R+ LP+AP L
Sbjct: 261 GIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTTESLERALTEE-RLDLPMAPGLGLV 319
Query: 440 L 440
L
Sbjct: 320 L 320
>gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia]
gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia]
Length = 411
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 119 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIG-INSQLTAAEIDSHIS-----DFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP Q+ IS L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTVAFASFEEQVEDVHDTFRISPELLQKVKETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKSF 238
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 264 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVL 320
>gi|403411896|emb|CCL98596.1| predicted protein [Fibroporia radiculosa]
Length = 357
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 45/204 (22%)
Query: 85 GYVGTDYRGLQM---QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
G G + +G ++ Q+ + +L TIEG L AL K G + + N + K+ R++RTD
Sbjct: 95 GRDGDEPKGPRLPKRQQPDPNLRTIEGVLFNALVKVGAVSQDNADDPVKVNLGRAARTDA 154
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH+ + +K+ P P DL R+N LP I+++SIL Q F+ R C+
Sbjct: 155 GVHAAGNAVSMKLITPV------PGVPDLVARMNEELPPEIRLWSILRVQNGFNARTTCD 208
Query: 202 LRKYSYLLPAEVI-------GINSQLTAAEIDSHISDF------NAILNE---------- 238
RKY+Y P+ ++ G++ L D+ F +IL++
Sbjct: 209 SRKYTYFFPSYLMIPPKPGSGLHHTLQDHGTDTQPDPFWSDDHPESILDDLRRKRTYRIN 268
Query: 239 -------------FEGEHPFHNYT 249
F G H FHN+T
Sbjct: 269 SKQVEALRLIAQAFNGSHNFHNFT 292
>gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis]
gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis]
Length = 408
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 18/189 (9%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL + K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKVMLKHKWITEDSFEQVQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
++ R++RTDKGV + + +K+ P +DL + NA LP I++F +
Sbjct: 119 IASFQRAARTDKGVSAARQVCSVKL----------PEELDL-QAFNADLPDQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE---IDSHISD-FNAILNEFEGEHPF 245
+ F+ + +CN R Y+Y LP + E I + + N L +EG F
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTIAFAAFDEQHEQETYRIPLKLQEVVNTTLKLYEGTKNF 227
Query: 246 HNYTERSKY 254
HN+T + +
Sbjct: 228 HNFTSKKNF 236
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
SA + F+CS L +V + + G+SFMLHQIRKMVG A+A+ R L
Sbjct: 240 SAKRYIMSFTCSAPFLSPQ-SIEFVTLQVKGQSFMLHQIRKMVGLAIAIVRGNTTTATLE 298
Query: 420 LSLAKHSRIVLPLAPSEVLFL 440
+L + R+ LP+AP L L
Sbjct: 299 RALTE-ERLDLPMAPGLGLVL 318
>gi|448515468|ref|XP_003867346.1| Deg1 protein [Candida orthopsilosis Co 90-125]
gi|380351685|emb|CCG21908.1| Deg1 protein [Candida orthopsilosis]
Length = 468
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 30/213 (14%)
Query: 51 KSSPSVSHTLTRPTP----NSSDDK---WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSL 103
K++P+ S T T P P S K W + +ALR Y+G +Y GL Q + L
Sbjct: 75 KTAPTTSPTCTAPKPEIRQKSKKQKQFDWSRHNFRFIALRFAYLGWNYNGLAYQFEPTPL 134
Query: 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAW 161
T+E + L K I E + ++ ++R RTDKGV ++ ++ +K+ + P+
Sbjct: 135 PTVEETILKTLSKIKLIPEP----IDQVDFSRCGRTDKGVSAMNQVVSIKLRSNLSPEEQ 190
Query: 162 KD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGIN 217
+D D ID +NA+LP +IKV SI L FD R C R Y YL A + I
Sbjct: 191 QDSTNDDKEIDYLTIINANLPSDIKVHSICLHPPPDFDARFSCKNRHYRYLFKASNLDIE 250
Query: 218 SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ AA ++G+H F N+ +
Sbjct: 251 AMNKAA-------------GYYQGQHDFRNFCK 270
>gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST]
gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 98/187 (52%), Gaps = 24/187 (12%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V+++K + +GY G +Y G MQR+ + TIE +L A+ K I + + Q+I +
Sbjct: 108 VKRRKSIILLGYSGVNYFG--MQRNPGT-KTIEEDLLRAMQKREWINDEGFRQPQQIQFQ 164
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV + ++ +K+ P +D+ + +N+ LP +I+V+++ + F
Sbjct: 165 RAARTDKGVSAAMQVVSIKL----------PDNLDI-EALNSELPEDIRVYAVKRVTKGF 213
Query: 195 DPRRECNLRKYSYLLPA-------EVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ + C+ R Y+Y LP E + I + AE ++ N +L + G FHN
Sbjct: 214 NSKTNCDARTYTYTLPTIAFAPNEEKVDIQTYRLPAE---RLARVNEVLALYVGTKNFHN 270
Query: 248 YTERSKY 254
+T R ++
Sbjct: 271 FTSRKEF 277
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
S F F C L + + I I G+SFMLHQIRKMVG +AV R L DI+
Sbjct: 281 SVKRFIMSFECDPPFLPEGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVRGLAESDIIE 340
Query: 420 LSLAKHSRIVLPLAPSEVLFL-RANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSV 478
+ + R +P AP L L R + R G E EE M+ EF+
Sbjct: 341 KAFGQ-DRYGIPTAPGLGLVLSRIHYDKYNKRYGEDGCHETLEFEKEE--PMIQEFFKRH 397
Query: 479 TLPEVSKFLDATKSPWTEWIENL 501
+ + T S EW+E L
Sbjct: 398 IASTIVETELKTNS-MVEWLEKL 419
>gi|342181822|emb|CCC91301.1| putative pseudouridylate synthase I [Trypanosoma congolense IL3000]
Length = 618
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 97/231 (41%), Gaps = 55/231 (23%)
Query: 71 KWEPVRKKKVALR------------VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
+W+P ++ LR V Y GT YRGLQ+Q + T+EG L AL AG
Sbjct: 3 RWKPFNTRRACLRKAPENHTLIGLCVMYCGTSYRGLQLQTHAPTHHTVEGVLIQALKDAG 62
Query: 119 GIRESNYGNLQKIA--WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKRVN 175
+ + G + A +ARS RTD+GVH++ +ICL ++ + + G L +++N
Sbjct: 63 IVDGLHRGRVSGDAHRFARSCRTDRGVHAVRNLICLFVD---NGRLESAGGCRCLPQKLN 119
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI---------------GINSQL 220
A LP I+V F PR C+ R Y Y++PA + G N L
Sbjct: 120 ALLPSTIRVAHATQLMGDFVPRFCCDRRVYRYMIPAYALMSPCTSWEEFYTKFPGSNELL 179
Query: 221 TAAEIDSHISDF----------------------NAILNEFEGEHPFHNYT 249
+ S DF + +L G H FHN++
Sbjct: 180 QHRALGSDFVDFCPGREEAGTFLSVLGDVVSRGNDLLLRHIVGTHFFHNFS 230
>gi|372099929|gb|AEX66197.1| FI18513p1 [Drosophila melanogaster]
Length = 467
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 119 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 175
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 176 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 224
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 225 VTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTK 284
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 285 NFHNFTSKKSF 295
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 321 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTE-ERLDLPMAPGLGLVL 377
>gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster]
gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster]
Length = 442
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 94 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 150
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 151 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 199
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 200 VTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTK 259
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 260 NFHNFTSKKSF 270
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 296 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVL 352
>gi|207345339|gb|EDZ72195.1| YGL063Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 330
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|1322568|emb|CAA96766.1| PUS2 [Saccharomyces cerevisiae]
Length = 370
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|323337610|gb|EGA78855.1| Pus2p [Saccharomyces cerevisiae Vin13]
Length = 406
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|349578160|dbj|GAA23326.1| K7_Pus2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 370
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans]
gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans]
Length = 411
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 119 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTVAFASFEEKVDDVHDTFRISPELLQKVKETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKSF 238
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 264 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVL 320
>gi|323305032|gb|EGA58786.1| Pus2p [Saccharomyces cerevisiae FostersB]
Length = 370
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
Length = 271
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K+A +V Y+GTDY G Q Q + L TIEGEL A FK GI +S +K ++ + R
Sbjct: 3 KIAFKVAYIGTDYHGFQRQPN---LPTIEGELLRA-FKKSGISDSP----EKSDYSIAGR 54
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GV +L ++CLK + KD R+N +LP NI++ F PR
Sbjct: 55 TDRGVSALGNVVCLKTD------KDVT-----INRINYYLPSNIRIIGSTMVSNGFKPRY 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
LR Y Y+L + L ++ + A + EG+H + N+++RS+ R P
Sbjct: 104 -AKLRHYRYIL-------DKSLCPNTLNLKLMKQAA--KQMEGKHNYINFSKRSE--RAP 151
Query: 259 HKTGRVSKRAKASKDAVFSRVEES 282
+ + + VF V ES
Sbjct: 152 ERMVYSVDLVETPDNIVFDVVGES 175
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 77/176 (43%), Gaps = 17/176 (9%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W ++K+AL+ Y G DY GL +Q+D L T+EG+L AL +A + G L+
Sbjct: 40 WANAPRRKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLVDPK--GGLEGC 97
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
W R RTD+GV + +I L + + P+ +N HLP IK+ + P
Sbjct: 98 GWERCGRTDRGVSAAGQVISLWVRSALSQEELLPH--PFTYMINRHLPDPIKILAWSPVD 155
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
SF R C R Y Y P +G++ I A G H F N
Sbjct: 156 LSFSSRYSCTWRHYKYFFPP--VGLD-----------IPAMRAACAYLPGTHEFRN 198
>gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster]
gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster]
Length = 410
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D + +++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q
Sbjct: 62 DPADRIKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 119 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKSF 238
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+V + + G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L L
Sbjct: 264 FVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLVL 320
>gi|428165192|gb|EKX34193.1| hypothetical protein GUITHDRAFT_80757 [Guillardia theta CCMP2712]
Length = 380
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 101/230 (43%), Gaps = 51/230 (22%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG------G 119
++SD + + + A+ GYVG+ Y GLQ + + TIE ELE+AL K G G
Sbjct: 7 STSDVREASLPGEVCAVLCGYVGSRYHGLQ--KHDKGPPTIEQELESALIKCGALVYESG 64
Query: 120 IRESNYG----NLQKIAWARSSRTDKGVHSLATMICLKMEI--PPDAWKDD--------- 164
I ++ +G +L K+ W +SRTDKGVH++ I L M++ W++
Sbjct: 65 ITQNEFGLKNGDLSKVKWTHASRTDKGVHAVGQCIALSMQLNFAGKTWEEQQANIKSDIV 124
Query: 165 -------PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGIN 217
P G +R++ L I FD RR+ R Y Y + I+
Sbjct: 125 VYGIKKVPKGFYDDRRLDPSLGLGIT---------RFDARRDATGRIYEY----QTFRIS 171
Query: 218 SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKR 267
D I+ A+L +EG H FHN+T P +T RV R
Sbjct: 172 --------DEEIAKIAAVLRIYEGTHDFHNFTADKCSDEGPTETQRVVSR 213
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 22/140 (15%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK-----HSRIVLPLAP 434
G Y+ + + G+SF+ HQIRKMVG A+ R RD + SR +PLAP
Sbjct: 225 GVEYLGLEVEGDSFIYHQIRKMVGLAIFALR--YKRDDERVQFVHDIVHDQSRHYVPLAP 282
Query: 435 S------EVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLD 488
S VLF + N +T G T +++ E+ + + EF PE+ +
Sbjct: 283 SLGLMLDRVLFRKEN----KTHGGFT-----VLLDLEDFSREMTEFKRQRIYPEIDEKEK 333
Query: 489 ATKSPWTEWIENLEKFTSIP 508
++ +E + + F S+P
Sbjct: 334 REQNVSSEKLVQVLPFPSLP 353
>gi|398364673|ref|NP_011452.4| pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|347595823|sp|P53167.4|PUS2_YEAST RecName: Full=tRNA pseudouridine(27/28) synthase; AltName:
Full=tRNA pseudouridine synthase 2; AltName: Full=tRNA
pseudouridylate synthase 2; AltName: Full=tRNA-uridine
isomerase 2
gi|1403093|emb|CAA56699.1| pseudouridine synthase 2 [Saccharomyces cerevisiae]
gi|329138894|tpg|DAA08039.2| TPA: pseudouridine synthase PUS2 [Saccharomyces cerevisiae S288c]
gi|392299198|gb|EIW10292.1| Pus2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 370
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|344301779|gb|EGW32084.1| hypothetical protein SPAPADRAFT_61166 [Spathaspora passalidarum
NRRL Y-27907]
Length = 411
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA+R Y+G +Y GL Q++E L T+EG + AL KA I+E +
Sbjct: 39 WSKYHTRFVAIRFAYLGWNYNGLAYQKEETPLPTVEGTILDALHKAKLIKEP---TVDCC 95
Query: 132 AWARSSRTDKGVHSLATMICLKME--IPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFS 186
++R RTDKGV ++ +I L + + P+ D D + A +N+ LP +I++ +
Sbjct: 96 KFSRCGRTDKGVSAMNQVISLNVRSSLTPEEQADSSNDVKEVKYATILNSLLPPDIRITA 155
Query: 187 I-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
I L FD R C R Y YL + + I++ AA++ +EG H F
Sbjct: 156 ISLRPPPKFDARFSCESRHYKYLFLKQQLDIDAMNQAAQL-------------YEGTHDF 202
Query: 246 HNYTE 250
N+ +
Sbjct: 203 RNFCK 207
>gi|151943741|gb|EDN62051.1| pseudouridine synthase [Saccharomyces cerevisiae YJM789]
gi|190407023|gb|EDV10290.1| pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]
gi|256269708|gb|EEU04978.1| Pus2p [Saccharomyces cerevisiae JAY291]
gi|259146442|emb|CAY79699.1| Pus2p [Saccharomyces cerevisiae EC1118]
gi|323333685|gb|EGA75078.1| Pus2p [Saccharomyces cerevisiae AWRI796]
gi|323348667|gb|EGA82910.1| Pus2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354937|gb|EGA86768.1| Pus2p [Saccharomyces cerevisiae VL3]
gi|365765568|gb|EHN07075.1| Pus2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 370
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>gi|72390962|ref|XP_845775.1| pseudouridylate synthase I [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175816|gb|AAX69943.1| pseudouridylate synthase I, putative [Trypanosoma brucei]
gi|70802311|gb|AAZ12216.1| pseudouridylate synthase I, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 618
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + L V Y GT +RGLQ+Q + T+EG L AL AG + G + ++
Sbjct: 18 PRDHTHIGLCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEH 77
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKRVNAHLPRNIKVFSILPS 190
+ARS RTD+GVH++ ++CL + P++ + G D L + +NAHLP ++V +
Sbjct: 78 HFARSCRTDRGVHAVRNLVCLFV---PNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTV 134
Query: 191 QRSFDPRRECNLRKYSYLLP 210
F PR C R Y Y++P
Sbjct: 135 MGDFIPRFCCVSRIYRYMIP 154
>gi|398022072|ref|XP_003864198.1| hypothetical protein, conserved [Leishmania donovani]
gi|322502433|emb|CBZ37516.1| hypothetical protein, conserved [Leishmania donovani]
Length = 701
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 45/188 (23%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL---QKIA 132
RK+KV + GYVG Y GLQ T+E L ALF+ I E N+ N+ Q +
Sbjct: 54 RKQKVGIIFGYVGECYCGLQWNHLP-EYPTVEEALMKALFETDMISEVNFSNVKVQQLLN 112
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDA----------------------------WKDD 164
+ R+SRTDKGVH+L ++ + + +P D +DD
Sbjct: 113 FERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDVEDD 172
Query: 165 P-------YGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGI 216
+ D AKR +N LPR+I V++++P RSF+ C R+Y Y LP +
Sbjct: 173 ANSAQAAVFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFAL-- 230
Query: 217 NSQLTAAE 224
+TAAE
Sbjct: 231 ---MTAAE 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP----RDILTLSLAKHSRIVLPLAPS 435
G V I + G+SFML+QIRKM+G V + LP RD+L L K R +P+AP+
Sbjct: 560 GIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGLPDSYIRDVL---LRKGVRRGIPMAPA 616
Query: 436 EVLFLRANSFSVRTR 450
LFL FS R
Sbjct: 617 NGLFLSYLDFSGYNR 631
>gi|146098588|ref|XP_001468420.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072788|emb|CAM71504.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 701
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 45/188 (23%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL---QKIA 132
RK+KV + GYVG Y GLQ T+E L ALF+ I E N+ N+ Q +
Sbjct: 54 RKQKVGIIFGYVGECYCGLQWNHLP-EYPTVEEALMKALFETDMISEVNFSNVKVQQLLN 112
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDA----------------------------WKDD 164
+ R+SRTDKGVH+L ++ + + +P D +DD
Sbjct: 113 FERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAALQEHAEGAAAGEVYNADGDVEDD 172
Query: 165 P-------YGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGI 216
+ D AKR +N LPR+I V++++P RSF+ C R+Y Y LP +
Sbjct: 173 ANSAQAAVFSCDEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFAL-- 230
Query: 217 NSQLTAAE 224
+TAAE
Sbjct: 231 ---MTAAE 235
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP----RDILTLSLAKHSRIVLPLAPS 435
G V I + G+SFML+QIRKM+G V + LP RD+L L K R +P+AP+
Sbjct: 560 GIEVVRIELDGQSFMLNQIRKMIGAVVCIAAGGLPDSYIRDVL---LRKGVRRGIPMAPA 616
Query: 436 EVLFLRANSFSVRTR 450
LFL FS R
Sbjct: 617 NGLFLSYLDFSGYNR 631
>gi|261329198|emb|CBH12177.1| pseudouridylate synthase I, putative [Trypanosoma brucei gambiense
DAL972]
Length = 618
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + L V Y GT +RGLQ+Q + T+EG L AL AG + G + ++
Sbjct: 18 PRDHTHIGLCVMYCGTAFRGLQLQAHAPTHHTVEGVLIQALKDAGIVDGVQRGRVSGEEH 77
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKRVNAHLPRNIKVFSILPS 190
+ARS RTD+GVH++ ++CL + P++ + G D L + +NAHLP ++V +
Sbjct: 78 HFARSCRTDRGVHAVRNLVCLFV---PNSKLEAAGGCDRLPQLLNAHLPSTVRVERVTTV 134
Query: 191 QRSFDPRRECNLRKYSYLLP 210
F PR C R Y Y++P
Sbjct: 135 MGDFIPRFCCVSRIYRYMIP 154
>gi|391340105|ref|XP_003744386.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A,
mitochondrial-like [Metaseiulus occidentalis]
Length = 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 21/194 (10%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+++ KW + KK A+ + Y G Y GLQ TIEG+L A KAG I +
Sbjct: 70 ATEQKW---KLKKFAMCLTYCGKGYLGLQ---KNPGFKTIEGDLLEACVKAGVITPESAE 123
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEI---PPDAWKDDPYGIDLAKRVNAHLPRNIK 183
Q I++ R++RTDKGV + ++ LK+ PP+ ++ +++N HL I+
Sbjct: 124 YPQGISFQRAARTDKGVSAARQILSLKLPTTKEPPE---------EMVRKINEHLVDQIR 174
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFE 240
V + ++F+ + + R Y Y+ P + Q+ + + N +L +
Sbjct: 175 VIGLKRVTKNFNSKNNADARTYLYICPTFAFTPHDQVVNESYRLPSERVEEINRLLKMYI 234
Query: 241 GEHPFHNYTERSKY 254
G H FHN+T Y
Sbjct: 235 GCHNFHNFTSGKLY 248
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 13/86 (15%)
Query: 361 ASHFRKIFSCSC------GKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP 414
AS R +F C GKLE YV+ + G+SFMLHQIRKMVGT + + R
Sbjct: 251 ASAKRVLFEVDCSSPFMVGKLE------YVQFRLKGQSFMLHQIRKMVGTIIGIMRGYTT 304
Query: 415 RDILTLSLAKHSRIVLPLAPSEVLFL 440
+T + ++ +P AP L L
Sbjct: 305 EAFITRAFGP-EKLDVPKAPPLGLML 329
>gi|435850369|ref|YP_007311955.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
gi|433660999|gb|AGB48425.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
Length = 269
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ YVGT Y G Q+Q D ++TIEGEL AL + I + + Q S R
Sbjct: 2 RVALKIAYVGTGYHGSQIQSD---VATIEGELFNALKELDIIDDPKTASFQS-----SGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ ++ + P + + + +N+ LP +I ++ FDPRR
Sbjct: 54 TDAGVHARGQVVAFNTDKP---------NLSIPRVINSKLPNSIWAWAHAEVPYDFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ N R Y Y++ E I+ +A++I GEH F N+ + + +
Sbjct: 105 DANSRVYRYIMSGEQYDISRIRSASKI-------------LAGEHDFSNFCSKDEDKSTV 151
Query: 259 HKTGRVSKRAKAS 271
R+ R +
Sbjct: 152 RDVKRIDVRVSGA 164
>gi|398016885|ref|XP_003861630.1| pseudouridylate synthase-like protein [Leishmania donovani]
gi|322499857|emb|CBZ34930.1| pseudouridylate synthase-like protein [Leishmania donovani]
Length = 696
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + L V Y G+ +RGLQ+Q + T+EG L AL AG I E G +
Sbjct: 21 PKNHVHIGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIAEVVRGRPAGEHH 80
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ARS RTD+GVH++ M+ L +P + +++ + +++N LP ++V +++
Sbjct: 81 HFARSCRTDRGVHAIRNMVSLF--VPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLS 138
Query: 192 RSFDPRRECNLRKYSYLLP 210
SF PR CN R Y Y+LP
Sbjct: 139 GSFIPRHCCNRRVYRYMLP 157
>gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum]
Length = 334
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 112/242 (46%), Gaps = 34/242 (14%)
Query: 27 FSNKISAVNLLPLSCYRCPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGY 86
F ++I+ L +S + + K SPS+ SS+ +++ A+ + Y
Sbjct: 4 FLSRINNFFLSAMSVLKSSELFAVKQSPSLE--------VSSNGSGAKHKRRNNAILMMY 55
Query: 87 VGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSL 146
G Y G MQR TIEGEL ALF G + +K+ + R+S+TDK V +L
Sbjct: 56 SGWGYYG--MQRGP-IYPTIEGELSKALFTCGQLVNVTSEEHKKVNFQRASKTDKYVSAL 112
Query: 147 ATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYS 206
+ LK+ DD DL ++N LP++I++ I+ RSF C R Y
Sbjct: 113 GQVCSLKLY-------DDA---DLLNKLNTALPQDIRILDIIRVTRSFSSYNSCTHRVYD 162
Query: 207 YLLPAEVIGI-NSQLTAAEIDSH------ISDFNAILNEFEGEHPFHNY------TERSK 253
YLLP + N L+ + ++ I+ N +L ++G H F+N+ T++S
Sbjct: 163 YLLPTFALSSGNLSLSDSTCWTYRVTAEKITKLNNLLERYKGTHNFYNFTSGRLPTDKSC 222
Query: 254 YR 255
YR
Sbjct: 223 YR 224
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
Y I I G+SFMLHQ+RKM+G + + R D+ + K R+ +P AP L L
Sbjct: 242 YTVIRIIGQSFMLHQVRKMIGLVLGILRGYATEDVFDIVFCKE-RVDIPKAPGLGLMLNQ 300
Query: 443 NSFSVRTRP----GVTRP 456
FS + G+ +P
Sbjct: 301 VDFSYYNKKYQNDGIHQP 318
>gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 491
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 88/184 (47%), Gaps = 24/184 (13%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA++ Y+G +Y GL Q D L T+E + AL K IRE ++++
Sbjct: 123 WSKQNMRFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREP----IEEV 178
Query: 132 AWARSSRTDKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFS 186
+++ RTDKGV ++ +I +K+ + P +D D +D +NA+LP +IKV +
Sbjct: 179 EYSKCGRTDKGVSAMNQVISIKLRSNLTPQEQQDPAFDAKEVDYFTVINANLPADIKVHA 238
Query: 187 I-LPSQRSFDPRRECNLRKYSYLL-PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
I L +FD R C R Y YL + I+ AAE +EG H
Sbjct: 239 ICLRPPENFDARFSCKERHYRYLFRKTSTLDIDLMAQAAEY-------------YEGLHD 285
Query: 245 FHNY 248
F N+
Sbjct: 286 FRNF 289
>gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba]
gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba]
Length = 410
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 20/191 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D E +++KK A+ + Y G ++ G MQR+ + TIE EL + K I E ++ +Q
Sbjct: 62 DPAERIKRKKSAILLSYCGANFYG--MQRNP-GMQTIEEELFKVMLKHKWITEESFEQIQ 118
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
+ R++RTDKGV + + +K+ P +DL + NA LP+ I++F +
Sbjct: 119 ISCFQRAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVER 167
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH------ISDFNAILNEFEGEH 243
+ F+ + +CN R Y+Y LP + D+ + L +EG
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTVAFASFEEKVEDLHDTFQISPELLQKVKETLKLYEGTK 227
Query: 244 PFHNYTERSKY 254
FHN+T + +
Sbjct: 228 NFHNFTSKKSF 238
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V +++ G+SFMLHQIRKMVG A+A+ R L +L + R+ LP+AP L
Sbjct: 261 GIEFVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEE-RLDLPMAPGLGLV 319
Query: 440 L 440
L
Sbjct: 320 L 320
>gi|219120809|ref|XP_002185636.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582485|gb|ACI65106.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 293
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 42/204 (20%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+ YVGT+Y G Q+ + T + E E A+ + + N+G+ K +W+ S RTDKGV
Sbjct: 3 LAYVGTNYGGFQINDGQR---TPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGV 59
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H+ A ++ K+E+ PD ++ +N LP +++V ++ + R+F + + +
Sbjct: 60 HACAQVVSAKVELLPDQTM-----AEVRDEMNTVLPDDVRVLDVVRTTRNFCAKTQRDRV 114
Query: 204 KYSYLLPA--------------EVIGINSQ-------LTAAEIDS-------------HI 229
+Y Y++P+ +V+G +++ L E+ S HI
Sbjct: 115 RYQYMIPSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANPMHI 174
Query: 230 SDFNAILNEFEGEHPFHNYTERSK 253
+ L +EG H FHN++ K
Sbjct: 175 AKLQEALQVYEGTHAFHNFSRGVK 198
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ + G+SF+L+QIRKMV A+ V R ++P ++ +L + S + + +AP++ LF
Sbjct: 222 GVEWIPTQVLGQSFLLNQIRKMVCMAMDVARGVVPLTNVSRALERQSDVRINVAPAQGLF 281
Query: 440 LRANSFSVRTR 450
L + + R
Sbjct: 282 LEMSYYGGYNR 292
>gi|157875459|ref|XP_001686121.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129195|emb|CAJ07732.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 701
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 105/241 (43%), Gaps = 51/241 (21%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL---QKIA 132
RK+KV + GYVG Y GLQ T+E L ALF+ I E N+ N+ Q +
Sbjct: 54 RKQKVGIIFGYVGECYCGLQWNHLP-EYPTVEEALMKALFETDMISEVNFSNVKVQQLLN 112
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDA----------------------------WKDD 164
+ R+SRTDKGVH+L ++ + + +P D +DD
Sbjct: 113 FERASRTDKGVHALRNVVSVAVMLPYDPSYTKKRVAVLQEHAEGAAAGEVYNADGDVEDD 172
Query: 165 P-------YGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGI 216
+ + AKR +N LPR+I V++++P RSF+ C R+Y Y LP +
Sbjct: 173 ANSAQTAVFSCEEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFALMT 232
Query: 217 NSQLTAAEIDSHISDFNAILNE---FEGEH----PFHNYT----ERSKYRRKPHKTGRVS 265
++ + + ++ L E G+H P T E RRKP + R S
Sbjct: 233 AAEYSKTYFPTFLAPSQPTLKEVGFVPGKHGKRDPPRAATVTDEEEEARRRKPKSSARKS 292
Query: 266 K 266
K
Sbjct: 293 K 293
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP----RDILTLSLAKHSRIVLPLAPS 435
G V I + G+SFML+QIRKM+G V + LP RD+L L K R +P+AP+
Sbjct: 560 GIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGLPGSYIRDVL---LRKGVRRGIPMAPA 616
Query: 436 EVLFLRANSFSVRTR 450
LFL FS R
Sbjct: 617 NGLFLSYLDFSGYNR 631
>gi|154418432|ref|XP_001582234.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121916468|gb|EAY21248.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 345
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 24/176 (13%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ L Y+GT Y GLQ D H T+E EL AL AG + + NL +I W+ +SRT
Sbjct: 29 IILLYRYIGTQYHGLQQNIDTH---TVEKELFQALISAGFLSDQANCNLNRIKWSEASRT 85
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGI---DLAKRVNAHLPR--NIKVFSILPSQRSF 194
D GVH+ A ++ K GI D+ +N LPR +I++ + + +R F
Sbjct: 86 DAGVHACAQVLSFK--------ASGLKGICIADIPDLINKQLPRTSDIEIITCITLRRQF 137
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF-NAILNEFEGEHPFHNYT 249
++ R Y++LLP NS H++ +IL F G +HN+T
Sbjct: 138 YAQKFAESRNYNFLLPTNAFSSNSI-------EHLNYLRTSILPLFIGWLNYHNFT 186
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V +I GESFML+QIRKM+ T ++ + + + L++ + + P + L
Sbjct: 213 GVEFVLFTIHGESFMLNQIRKMIATVISASHNYIGAEEVKRCLSEEGWSI-KMCPGDGLM 271
Query: 440 LRANSFSVRTRPGVTRP-EMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEW- 497
L + +P P + ++ E + + V P +++ + K + +W
Sbjct: 272 LDHVDYIKCNKPSKKNPITFENDLQFTEFQPEIQRWKKEVLFPHIAEIIKK-KDLYHKWV 330
Query: 498 IENLEKF 504
IE L K+
Sbjct: 331 IEYLPKY 337
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q++ L T+EG + AL K I N GN ++R RT
Sbjct: 61 IALKFSYLGWNYNGLAIQKEPTPLPTVEGTIIEALNKCKLIPSLNPGNFN---FSRCGRT 117
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV +L +I LK+ + P+ D D D +N LP +IK+ I L +
Sbjct: 118 DKGVSALNQVISLKVRSNLTPEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRPPQG 177
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + I AA++ +EG H F N+ +
Sbjct: 178 FDARFSCTSRHYKYLFHQQGLDIELMQKAAKL-------------YEGSHDFRNFCK 221
>gi|440794132|gb|ELR15303.1| tRNA pseudouridylate synthase [Acanthamoeba castellanii str. Neff]
Length = 180
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L +GY GT+Y GLQ TIE ELE A+ KAGGI E N G+ K+ W R
Sbjct: 82 KRKVGLLLGYKGTNYVGLQRN---PGFKTIESELERAIVKAGGIDEWNAGSFTKVNWQRC 138
Query: 137 SRTDKGVHSLATMICLKMEIP 157
+RTDKGVH+ ++ LK+ P
Sbjct: 139 ARTDKGVHACLNVVSLKIGAP 159
>gi|226293711|gb|EEH49131.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 597
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 14/129 (10%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DK P K+KVA+ +GY G+ Y G+Q+ + E TIEG+L TA AG I ++N + +
Sbjct: 128 DKRRP--KRKVAVLLGYSGSGYHGMQLSQTE---KTIEGDLFTAFVAAGAISKANATDPK 182
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K + R +RTDKGVH+ ++ LK+ I D+ D+ +++N HL I+V+ I
Sbjct: 183 KSSLVRCARTDKGVHAAGNVVSLKL-IVEDS--------DVVQKINNHLSPQIRVWGIEV 233
Query: 190 SQRSFDPRR 198
+ +S++ R+
Sbjct: 234 TNKSYNQRQ 242
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 11/168 (6%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W ++K+AL+ Y G D+ GL +Q+D L T+EG+L AL +A + G L+
Sbjct: 73 WANAPRRKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLVDPK--GGLEGC 130
Query: 132 AWARSSRTDKGVHSLATMICL-------KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
W R RTD+GV + +I L + E+ P A + + +N HLP IK+
Sbjct: 131 GWERCGRTDRGVSAAGQVISLWVRSALSQEELTPTATPTEEH--PFIYMINRHLPDTIKI 188
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P SF R C R Y Y + + + A DF
Sbjct: 189 LAWSPVDPSFSSRYSCTWRHYKYFFSPVGLDVAAMRAACAYLPGTHDF 236
>gi|444726440|gb|ELW66974.1| tRNA pseudouridine synthase A, mitochondrial [Tupaia chinensis]
Length = 452
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 94 LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLK 153
LQ TIE +L +AL ++G I E++ +++K+++ R +RTDKGV + ++ LK
Sbjct: 126 LQRNVGSSQFRTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLK 185
Query: 154 MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEV 213
+ W D D+ +++N+HLP +I++ + F+ + C+ R Y Y+LP
Sbjct: 186 V------WLID----DILEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYLYMLPTFA 235
Query: 214 IGINSQLTAAE----IDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
+ E + N +L ++G H FHN+T + R
Sbjct: 236 FAHKDRDVQDESYRLSPEALQQVNRLLACYQGTHNFHNFTSQKGPR 281
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P +L S + +++ +P AP L
Sbjct: 302 GLEFAVIKVKGQSFMTHQIRKMVGLLVAIVKGYAPESVLERSWGE-AKVHVPKAPGLGLV 360
Query: 440 LRANSF 445
L F
Sbjct: 361 LERVHF 366
>gi|354547215|emb|CCE43949.1| hypothetical protein CPAR2_501740 [Candida parapsilosis]
Length = 440
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 89/185 (48%), Gaps = 23/185 (12%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VALR Y+G +Y GL Q + L T+E + L K I E + ++
Sbjct: 76 WSKHDLRFVALRFAYLGWNYNGLAYQFEPTPLPTVEETILKTLSKIKLIPEP----IDQV 131
Query: 132 AWARSSRTDKGVHSLATMICLKM--EIPPDAWK---DDPYGIDLAKRVNAHLPRNIKVFS 186
++R RTDKGV ++ +I +K+ + P+ + +D ID +NA+LP +IKV S
Sbjct: 132 EFSRCGRTDKGVSAMNQVISIKLRSNLTPEEQQSSTNDDREIDYLTIINANLPSDIKVHS 191
Query: 187 I-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPF 245
I L FD R C R Y YL + + I++ AAE ++G+H F
Sbjct: 192 ICLHPPADFDARFSCKNRHYRYLFKSSNLDIDAMNKAAEY-------------YQGQHDF 238
Query: 246 HNYTE 250
N+ +
Sbjct: 239 RNFCK 243
>gi|401428267|ref|XP_003878616.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494865|emb|CBZ30168.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 700
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 45/188 (23%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKIA- 132
RK+KV + GYVG Y GLQ T+E L ALF+ I E N+ NL QK+
Sbjct: 54 RKQKVGIIFGYVGECYCGLQWNHLP-EYPTVEEVLMKALFETDMISEVNFSNLKVQKLLN 112
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDA----------------------------WKDD 164
+ R+SRTDKGVH+L ++ + + +P D +DD
Sbjct: 113 FERASRTDKGVHALRNVVSVAVMLPYDPSYTKKHLAALQEHAEGAAAGEVHTADGDVEDD 172
Query: 165 P-------YGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGI 216
+ + AKR +N LPR+I V++++P RSF+ C R+Y Y LP +
Sbjct: 173 ANSAQAAVFSCEEAKRLLNEALPRDIHVYAVVPVTRSFNAYLNCGGRRYEYYLPTFAL-- 230
Query: 217 NSQLTAAE 224
+TAAE
Sbjct: 231 ---MTAAE 235
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP----RDILTLSLAKHSRIVLPLAPS 435
G V I + G+SFML+QIRKM+G V V LP RD+L L K R +P+AP+
Sbjct: 559 GIEVVRIELDGQSFMLNQIRKMIGAVVCVAAAGLPETYIRDVL---LRKAVRRGIPMAPA 615
Query: 436 EVLFLRANSFSVRTR 450
LFL FS R
Sbjct: 616 NGLFLSYLDFSGYNR 630
>gi|146089460|ref|XP_001470389.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
gi|134070422|emb|CAM68761.1| pseudouridylate synthase-like protein [Leishmania infantum JPCM5]
Length = 696
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + L V Y G+ +RGLQ+Q + T+EG L AL AG + + G +
Sbjct: 21 PKNHVHIGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIVADVVRGRPAGEHH 80
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ARS RTD+GVH++ M+ L +P + +++ + +++N LP ++V +++
Sbjct: 81 HFARSCRTDRGVHAIRNMVSLF--VPKEVFEEMGQAEGICEKLNRQLPSTVRVANVMQLS 138
Query: 192 RSFDPRRECNLRKYSYLLP 210
SF PR CN R Y Y+LP
Sbjct: 139 GSFIPRHCCNRRVYRYMLP 157
>gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
Length = 431
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q+D L T+EG + AL K + S N+Q ++R RT
Sbjct: 82 IALKFSYLGWNYNGLAVQKDVTPLPTVEGVIIDALMKCRLVASS---NVQDFRFSRCGRT 138
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + + KD D + A+ +N LP +IK+ ++ L
Sbjct: 139 DKGVSAMNQVISLEVRSNLSDEEQKDPSNDTRELQYAQILNHLLPEDIKISAMCLRPPEG 198
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + ++ AA + + GEH F N+ +
Sbjct: 199 FDARYSCEYRHYKYLFSGKGLMLDRMQKAAAL-------------YHGEHDFRNFCK 242
>gi|154334040|ref|XP_001563275.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060287|emb|CAM45698.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 764
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 78/171 (45%), Gaps = 37/171 (21%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL---QKIA 132
RK+KV + GYVG Y GLQ T+E L ALF+ I E N+ N Q +
Sbjct: 120 RKQKVGIIFGYVGECYCGLQWNHLP-EYPTVEEALMKALFETDMISEVNFANFKVQQLLN 178
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDA-------------------------------- 160
+ R+SRTDKGVH+L ++ + + +P D
Sbjct: 179 FERASRTDKGVHALRNVVSVAVMLPYDPAYAKRRLAAMQEHTKGTAAGETHNVDGDSEED 238
Query: 161 WKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
D + + AKR +N LPR++ V+ ++P RSF+ C R+Y Y LP
Sbjct: 239 ANDAIFSCEEAKRLLNKALPRDLHVYGVVPVTRSFNAYLNCGGRRYEYYLP 289
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP----RDILTLSLAKHSRIVLPLAPS 435
G V I + G+SFML+QIRKM+G V + LP RD+L L K R +P+ P+
Sbjct: 623 GIEVVRIELDGQSFMLNQIRKMIGAVVCIAAAGLPLNHIRDVL---LRKGVRRGIPMVPA 679
Query: 436 EVLFLRANSFSVRTR 450
LFL FS R
Sbjct: 680 NGLFLSYLDFSGYNR 694
>gi|407420847|gb|EKF38702.1| pseudouridylate synthase I, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 14/133 (10%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA--WARSSRTDKGV 143
Y GT YRGLQ+Q + T+EG L A+ G I G ++ +ARS RTD+GV
Sbjct: 2 YCGTGYRGLQLQTHAPTHYTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARSCRTDRGV 61
Query: 144 HSLATMICL-----KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
H++ +ICL ++E K L + +N LP I+V + P +F PR
Sbjct: 62 HAVRNLICLFVFTERLEALGGCEK-------LKEMLNTALPLTIRVARVTPLMGNFIPRF 114
Query: 199 ECNLRKYSYLLPA 211
CN R Y YL+PA
Sbjct: 115 SCNRRVYHYLIPA 127
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I G SF+ + IRK+VGT +AV R + +L+ R+V PLAP L+L
Sbjct: 298 FLIFQIEGNSFLFNMIRKIVGTLIAVLRGAR-ETLFAEALSPDRRVVCPLAPGPYLYLFL 356
Query: 443 NSF 445
+++
Sbjct: 357 STY 359
>gi|401625765|gb|EJS43758.1| pus2p [Saccharomyces arboricola H-6]
Length = 371
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
+GY GT Y G+Q TIEGE+ LF+ G I E N +K ++ ++RTDKGV
Sbjct: 3 IGYRGTGYYGMQYNPPH---KTIEGEILGKLFEVGAISEKNSLAPKKNSFMAAARTDKGV 59
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
H++ ++ LK+ + D ++NA LP I+V+ I + + F+ R C+ R
Sbjct: 60 HAMLNLLSLKISLQEDT----------VAKLNAALPPEIRVWGIQSANKKFNARSACDSR 109
Query: 204 KYSYLLP 210
Y YL+P
Sbjct: 110 WYEYLVP 116
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+ + I G+SFMLHQIR+MV AV V R LP + +R +P AP+ L L
Sbjct: 247 WTSVRIHGQSFMLHQIRRMVALAVLVARCQLPPTRVLNYFVVGTRKHIPRAPAHGLLLEG 306
Query: 443 NSF 445
F
Sbjct: 307 PVF 309
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 87/178 (48%), Gaps = 36/178 (20%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VAL++GY+GT+Y G Q+Q + L T+EGEL AL + G + + N ++ +
Sbjct: 6 ERVALKIGYLGTNYHGFQIQ-PQAELQTVEGELFKALKRLGILEDRKTAN-----YSYAG 59
Query: 138 RTDKGVHSLATMI---CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGVH+LA ++ L + P + +N LP +I +I F
Sbjct: 60 RTDKGVHALAQVVSFDTLNQNMTP-------------RMINTMLPNDIWALAIAKPHAGF 106
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHISDFNAILNEFEGEHPFHNYTER 251
+ R+E R+Y Y L E+D S + D + +L G H F N+++R
Sbjct: 107 NARKEAIRREYRYFL----------FLQTELDISRMRDASELLI---GAHDFSNFSQR 151
>gi|401423720|ref|XP_003876346.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492588|emb|CBZ27865.1| pseudouridylate synthase-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 696
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + L V Y G+ +RGLQ+Q + T+EG L AL AG I + G +
Sbjct: 21 PKNHVHIGLCVLYSGSGFRGLQIQAHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHH 80
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ARS RTD+GVH++ M+ L +P + +++ + +++N LP ++V +++
Sbjct: 81 HFARSCRTDRGVHAIRNMVSLF--VPKEIFEEVGQTEGICEKLNRQLPATVRVANVMQLS 138
Query: 192 RSFDPRRECNLRKYSYLLP 210
SF PR CN R Y Y+LP
Sbjct: 139 GSFIPRHCCNRRVYRYMLP 157
>gi|157870999|ref|XP_001684049.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
gi|68127117|emb|CAJ04679.1| pseudouridylate synthase-like protein [Leishmania major strain
Friedlin]
Length = 696
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKIAWARSS 137
+ L V Y G+ +RGLQ+Q + T+EG L AL AG I + G + +ARS
Sbjct: 27 IGLCVLYSGSGFRGLQIQVHAPTCHTVEGVLIQALKDAGIIADVVRGRPAGEHHHFARSC 86
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD+GVH++ M+ L +P + ++ + +++N LP ++V +++ SF PR
Sbjct: 87 RTDRGVHAIRNMVSLF--VPKEVFEKMGQAEGICEKLNRQLPATVRVANVMQLSGSFIPR 144
Query: 198 RECNLRKYSYLLP 210
CN R Y Y+LP
Sbjct: 145 HCCNRRVYRYMLP 157
>gi|389601586|ref|XP_001562276.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505105|emb|CAM39306.2| pseudouridylate synthase-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 689
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNL--QKI 131
P + + L + Y G+ +RGLQ+Q + T+EG L AL G I + G +
Sbjct: 21 PKDQVHIGLCLLYSGSGFRGLQIQVHAPTCHTVEGMLIQALKDTGIIADVVRGRPAGEHH 80
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ARS RTD+GVH++ M+ L +P + + + +R+N LP ++V S++
Sbjct: 81 HFARSCRTDRGVHAIRNMVSLF--VPKEVFDKVGQSGGICERLNRRLPATVRVASVMQLS 138
Query: 192 RSFDPRRECNLRKYSYLLP 210
SF PR CN R Y Y+LP
Sbjct: 139 GSFIPRHCCNRRVYRYMLP 157
Score = 45.1 bits (105), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I GESF+L+ IRK++G+ +AV R IL +L+ R+ PLAP L+L
Sbjct: 365 FLIFQIEGESFLLNMIRKVIGSLLAVCRGAR-ESILEEALSPERRVTTPLAPGPYLYLAQ 423
Query: 443 NSF 445
+++
Sbjct: 424 STY 426
>gi|326929552|ref|XP_003210926.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Meleagris gallopavo]
Length = 596
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWK 162
TIE +L +AL ++G I E++ +++K+++ R +RTDKGV + ++ LK+ +
Sbjct: 147 FKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRCARTDKGVSAAGQIVSLKVRLID---- 202
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
D+ +++N HLP +I++ + F+ + +C+ R Y+Y+LP
Sbjct: 203 ------DILEKINNHLPSHIRILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDHDVQ 256
Query: 223 AEI----DSHISDFNAILNEFEGEHPFHNYT 249
E + N++L ++G H FHN+T
Sbjct: 257 EEAYRLSRETLEKVNSLLACYKGTHNFHNFT 287
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I CG+ + I + G+SFM+HQIRKM+G +A+ + P ++ S +
Sbjct: 299 RYIMEMYCGEPFVRENIEFAVIKVKGQSFMMHQIRKMIGLVIAIVKGYAPESVIERSWGE 358
Query: 425 HSRIVLPLAPSEVLFL 440
++ +P AP L L
Sbjct: 359 E-KVDVPKAPGLGLVL 373
>gi|71418252|ref|XP_810793.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener]
gi|70875381|gb|EAN88942.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 655
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA--WARSS 137
+ L V Y GT YRGLQ+Q + T+EG L A+ G I G ++ ++RS
Sbjct: 24 LGLCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDVHHFSRSC 83
Query: 138 RTDKGVHSLATMICL-----KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
RTD+GVH++ ++CL ++E K + + +N LP I+V + P
Sbjct: 84 RTDRGVHAVRNLVCLFVFTERIEALGGCEK-------IKEMLNTTLPLTIRVARVTPLMG 136
Query: 193 SFDPRRECNLRKYSYLLPA 211
+F PR CN R Y YL+PA
Sbjct: 137 NFIPRFSCNRRVYHYLIPA 155
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I G SF+ + IRK+VGT +AV R + +++ R+V PLAP L+L
Sbjct: 326 FLVFQIEGNSFLFNMIRKIVGTLIAVLRGAR-ETLFAEAVSPDRRVVCPLAPGPYLYLFL 384
Query: 443 NSF-----------SVRTRP 451
+++ SVR RP
Sbjct: 385 STYRRYDTVVRGSRSVRFRP 404
>gi|302837035|ref|XP_002950077.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f.
nagariensis]
gi|300264550|gb|EFJ48745.1| hypothetical protein VOLCADRAFT_90550 [Volvox carteri f.
nagariensis]
Length = 738
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 348 RWLYETDEADKLSASHFRKI--FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTA 405
+W E D D+++ +++R+I F+ + + G + + + G+SFMLH IR M+G A
Sbjct: 521 QWQMEMDPRDRVTQTYYRRIHHFTAADPRPLVEGGTPCLLLEVRGQSFMLHHIRHMIGGA 580
Query: 406 VAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS---VRTRPG------VTRP 456
VAV L+P+D+L SL +R+ +P AP L L +F + PG VT
Sbjct: 581 VAVALGLMPKDVLLGSLEPPARVAIPRAPPHTLLLADCTFGRFPQQCGPGDNDLRNVTGV 640
Query: 457 EMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNE 510
+ ++ ++F SV LP + + ++ + W EW +L P +
Sbjct: 641 RLSVRAGGQQ---RREDFRRSVLLPALQQLVELAE--WGEWKASLYDTYPFPQD 689
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 37/168 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIR----ESNYGNLQKIA 132
K+ VA+ GYVGT Y+ ++ S++ G+ + + + G+R ES Y +A
Sbjct: 81 KRSVAIHTGYVGTGYKAAFLEETGSSINRTLGD-DVTIEQVMGLRMLVDESCY-----VA 134
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
+ T+ G+ LA +N HLP I+VF++ + +
Sbjct: 135 GGPGADTE--------------------------GLVLADSINRHLPSQIRVFTVQKTNK 168
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
F R C R Y Y LPA +I + E + ++ F L+ F+
Sbjct: 169 KFSARHMCEERVYQYYLPASMIDLKCD-GGEEDAAKLAVFRDALSCFQ 215
>gi|239735631|gb|ACS12725.1| MIP10620p [Drosophila melanogaster]
Length = 341
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 14/136 (10%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+++KK A+ + Y G +Y G MQR+ + TIE EL A+ K I E ++ +Q +
Sbjct: 124 IKRKKSAILLSYCGANYYG--MQRNP-GMQTIEEELFKAMLKHKWITEDSFEQIQISCFQ 180
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV + + +K+ P +DL + NA LP+ I++F + + F
Sbjct: 181 RAARTDKGVSAARQVCSVKL----------PEELDL-EAFNADLPQQIRLFGVERVTKGF 229
Query: 195 DPRRECNLRKYSYLLP 210
+ + +CN R Y+Y LP
Sbjct: 230 NAKDQCNARTYTYTLP 245
>gi|426196564|gb|EKV46492.1| hypothetical protein AGABI2DRAFT_205761 [Agaricus bisporus var.
bisporus H97]
Length = 435
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 86/195 (44%), Gaps = 57/195 (29%)
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQK----IAWARSSRTDKGVHSLATMICLKM--EI 156
L TIEG L AL +AG + + N + K +A AR++RTD GVH+ ++ LKM +
Sbjct: 8 LKTIEGTLFKALVEAGAVSQDNANDPVKAKSFVALARAARTDAGVHAAGNIVSLKMIMHV 67
Query: 157 PPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP----- 210
P GI DL RVN LP I+++ + +Q SF+ R C+ RKY+Y P
Sbjct: 68 P---------GIPDLVGRVNELLPPEIRLWGYVRAQNSFNARLACDSRKYTYYFPSYLLI 118
Query: 211 ---------------AEVIGINSQL----------TAAEID-----------SHISDFNA 234
AE +G N + ++ E D I+D
Sbjct: 119 PPKPGSNLHRVLAQHAESLGHNGSILSHSFWDNPNSSKEDDMRRKRTWRVTQDRIADLRT 178
Query: 235 ILNEFEGEHPFHNYT 249
+F G H FHN+T
Sbjct: 179 AAQKFIGTHNFHNFT 193
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 354 DEADKLSASHFRKI---FSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
D +DK + H + I + G E +V + G+SFMLHQ+RKM+ + V R
Sbjct: 197 DASDKSNMRHMKSIEIADPVTHGDTE------WVSVLFHGQSFMLHQVRKMMSSLVLSCR 250
Query: 411 KLLPRDILTLSLAKHSRIVLPLAPSEVLFL----------RANSFSVRTRPGVTRPEMQT 460
+I+T L K+ +P PS L L R N+ + + +P P+ +
Sbjct: 251 TNTSPNIVT-ELYKNPDAFIPKMPSLGLLLEEPIFASYNSRMNTVNEKHKP--DSPDYRP 307
Query: 461 MVESEEILKMVDEF 474
M++ E ++EF
Sbjct: 308 MIDFEPYRSQINEF 321
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q+D L TIEG + AL K + Q+ ++R RT
Sbjct: 88 IALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSI---TPQEFEFSRCGRT 144
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + + KD D I +N LP +I++ ++ L S
Sbjct: 145 DKGVSAMNQVISLRVRSNLTDEEQKDPRNDHKEIQYVAILNQLLPDDIRISAVCLRPPNS 204
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + ++ AA++ +EGEH F N+ +
Sbjct: 205 FDARFSCEYRHYKYLFHKDGLDLDRMQKAAKL-------------YEGEHDFRNFCK 248
>gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica]
gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica CLIB122]
Length = 443
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 105/212 (49%), Gaps = 33/212 (15%)
Query: 45 PASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLS 104
P +SK+ + S+ ++R PVRK +A+R Y+G +Y GL +Q ++ L
Sbjct: 63 PPVKASKAKRNESYDISR----------HPVRK--IAIRFSYLGWNYGGLAVQHEDTPLP 110
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAWK 162
TIEG + +A+ + I ES +L + ++R RTD+GV + + +I LK+ ++ P+ +
Sbjct: 111 TIEGTILSAMQRCRLIPES--ASLFDLDFSRCGRTDRGVSAFSQVIALKVRSKLSPEEQQ 168
Query: 163 D---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINS 218
D D ++ +N LP +I+++S+ L FD R C R Y Y + I+
Sbjct: 169 DAANDNKELNYIHILNQLLPPDIRIYSVALRLPEGFDSRFSCEYRHYRYFFHKGDLDIDL 228
Query: 219 QLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
AA++ + GEH + N+ +
Sbjct: 229 MRQAAKL-------------YLGEHDYRNFCK 247
>gi|336476042|ref|YP_004615183.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
gi|335929423|gb|AEH59964.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
Length = 271
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL++ Y+G+DY G Q+Q D + T+EG+L AL G I + + N +A + R
Sbjct: 2 RIALKLAYIGSDYHGSQVQPD---VDTVEGQLFRALENLGIISDPHSAN-----YASAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD VH+ ++ E P + + + +N+ LP +I ++ FDPRR
Sbjct: 54 TDASVHAAGQVVAFDTEAP---------NLAIPRVINSKLPESIWAWAHAEVPDDFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
R Y Y++ E I I S++ AA F G H F N+ R
Sbjct: 105 NAKTRSYRYIMSGENIDI-SKIRAAS------------RYFTGTHDFLNFCTNDGDRNTV 151
Query: 259 HKTGRVSKR 267
R+ R
Sbjct: 152 RTVNRIDIR 160
>gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644399|emb|CCD60868.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 369
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHS 145
Y G Y G MQR TIEGEL ALF G + +++ + R+S+TDK V +
Sbjct: 2 YSGWGYYG--MQRCP-VFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSA 58
Query: 146 LATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKY 205
L + +++ K+D DL ++N LP NI+V I+ R F C R Y
Sbjct: 59 LGQVCSMQL-------KEDT---DLLSKLNNSLPENIRVLDIIRVTRGFSSYSSCTHRIY 108
Query: 206 SYLLPAEVIGINSQLTAAEIDS----------HISDFNAILNEFEGEHPFHNYT 249
YLLP + S T++ DS I+ N +L +++G H F+N+T
Sbjct: 109 DYLLPTFAL---SPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFYNFT 159
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
Y I I+G+SFMLHQIRKM+G A+AV R + + +K +RI +P AP L L
Sbjct: 189 YTIIRIAGQSFMLHQIRKMIGLALAVLRGYATEAVFDIVFSK-ARIDIPKAPGLGLMLNQ 247
Query: 443 NSFS 446
FS
Sbjct: 248 VDFS 251
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 22/175 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL MQ++ L T+EG++ A++ + + Q+ +++R RT
Sbjct: 84 IALKFAYLGWNYNGLAMQKEATPLPTVEGKIIEAMYTSKLVPSM---VPQEYSFSRCGRT 140
Query: 140 DKGVHSLATMICLKM--EIPPDAWK---DDPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV +++ +I LK+ + + K +DP I +N LP +I+V ++ L
Sbjct: 141 DKGVSAMSQVISLKVRSNLTDEEQKRPENDPREIRYVHILNQLLPDDIRVSAVCLRPPEG 200
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
FD R C+ R Y YL A+ + I+ A+ +++EG+H F N+
Sbjct: 201 FDARFSCDSRHYKYLFEADGLDISKMKEAS-------------SKYEGDHDFRNF 242
>gi|440470753|gb|ELQ39808.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae Y34]
gi|440481600|gb|ELQ62164.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae P131]
Length = 729
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ H TIEG+L A AG I ++N + +K++ R
Sbjct: 120 KKKVAVLIGYAGTGYKGMQIN---HFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRC 176
Query: 137 SRTDKGVHSLATMICLKMEIP 157
+RTDKGVH+ + +I LK+ +P
Sbjct: 177 ARTDKGVHAASNVISLKLIVP 197
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMV AV R +P D +T S + RI +P AP L L
Sbjct: 563 WVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSY-EAKRISIPKAPGLGLLLER 621
Query: 443 NSF 445
F
Sbjct: 622 PVF 624
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
DL R+N+HLP I+V+ IL + SF + C+ R Y YL+P +
Sbjct: 298 DLVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 343
>gi|389627892|ref|XP_003711599.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|351643931|gb|EHA51792.1| tRNA pseudouridine synthase 1 [Magnaporthe oryzae 70-15]
Length = 720
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY GT Y+G+Q+ H TIEG+L A AG I ++N + +K++ R
Sbjct: 111 KKKVAVLIGYAGTGYKGMQIN---HFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRC 167
Query: 137 SRTDKGVHSLATMICLKMEIP 157
+RTDKGVH+ + +I LK+ +P
Sbjct: 168 ARTDKGVHAASNVISLKLIVP 188
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + + G+SFM+HQIRKMV AV R +P D +T S + RI +P AP L L
Sbjct: 554 WVSLKVHGQSFMMHQIRKMVAMAVLTVRCGVPLDRITQSY-EAKRISIPKAPGLGLLLER 612
Query: 443 NSF 445
F
Sbjct: 613 PVF 615
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
DL R+N+HLP I+V+ IL + SF + C+ R Y YL+P +
Sbjct: 289 DLVARINSHLPDQIRVWDILRTNNSFSCYQACDSRWYEYLMPTHAL 334
>gi|51235381|gb|AAT98576.1| tRNA pseudouridine synthase [Pneumocystis carinii]
Length = 227
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIEG+L A GGI E N + +K + R++RTD+GVH+ ++ LK+ I +
Sbjct: 6 TIEGDLFRAFVDTGGIAEMNADDPKKSSLNRAARTDRGVHAACNVLSLKLII------EQ 59
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLT--A 222
P +L +R+N LP I+V+ I + +SF+PR C R Y YL+P+ V +T A
Sbjct: 60 P---NLLERINEALPETIRVWGISRTLKSFNPRTFCEARIYEYLVPSYVFIPPYPMTQLA 116
Query: 223 AEIDSHISDFNAILN 237
I H N I N
Sbjct: 117 QRITKHREMINCIEN 131
>gi|213401667|ref|XP_002171606.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999653|gb|EEB05313.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 453
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 77/137 (56%), Gaps = 12/137 (8%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
V + ++A+ +GY GT Y G+Q+ ++ + ++ AL G IR+++ + I+ +
Sbjct: 38 VGQVRIAVLLGYSGTKYHGIQLNNPHATIERVVLDVFQAL---GLIRDTDADH---ISLS 91
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGVH+L ++ + G +LA R+N LP +I+V+ +L SF
Sbjct: 92 RAARTDKGVHALGNVVSFLVS------NFTFTGKELATRLNEKLPEDIRVWDVLKVPMSF 145
Query: 195 DPRRECNLRKYSYLLPA 211
+PR C+ R Y Y LP+
Sbjct: 146 NPRLCCDSRLYEYYLPS 162
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 353 TDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKL 412
T D S S +R I S GK + +V + + G+SFMLHQIRKM+ A+ V R
Sbjct: 294 TVNQDAASRSSWRYIHSIQLGKPFVYKEWEWVPVFLHGQSFMLHQIRKMLAHAIMVVRTA 353
Query: 413 LPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
P +T + + + + + +P VL LR FS
Sbjct: 354 APISCVTKAFTE-TPLNISRSPGHVLLLRNPVFS 386
>gi|384496829|gb|EIE87320.1| hypothetical protein RO3G_12031 [Rhizopus delemar RA 99-880]
Length = 442
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 36/190 (18%)
Query: 63 PTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
P P + V KKKVAL VG+ GT Y+G+Q+ + TIEG + AL KAGG+ +
Sbjct: 66 PRPEDQGPREPRVPKKKVALLVGFNGTGYQGMQLNPNS---KTIEGAIFEALCKAGGVSK 122
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
N + +K M+IP D D+ +R N+ LP I
Sbjct: 123 DNASDPKK-----------------------MQIPGD--------YDVIERANSFLPEQI 151
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+++ +P SF + C+ R Y YLLP + + A D + + IL + E
Sbjct: 152 RIWGYVPVIGSFHAKTLCDSRIYEYLLP--TCALMEPIVAELTDEQLFPNDLILTNNDRE 209
Query: 243 HPFHNYTERS 252
+P Y RS
Sbjct: 210 NPIVKYARRS 219
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I + G+SFMLHQIRKM+ + + R P ++ + + RI +P AP+ L L
Sbjct: 287 WISIKLHGQSFMLHQIRKMISMGMLIARTHTPISLIQETFGE-KRINIPKAPALGLLLER 345
Query: 443 NSFSV 447
F V
Sbjct: 346 PVFDV 350
>gi|407853622|gb|EKG06525.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 626
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA--WARSSRTDKGV 143
Y GT YRGLQ+Q + T+EG L A+ G I G ++ +ARS RTD+GV
Sbjct: 2 YCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDVHHFARSCRTDRGV 61
Query: 144 HSLATMICL-----KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
H++ +ICL ++E K + + +N LP I+V + P +F PR
Sbjct: 62 HAVRNLICLFVFTERIEALGGCEK-------IKEMLNTTLPLTIRVARVTPLMGNFIPRF 114
Query: 199 ECNLRKYSYLLP 210
CN R Y YL+P
Sbjct: 115 SCNRRVYHYLIP 126
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I G SF+ + IRK+VGT +AV R + +L+ R+V PLAP L+L
Sbjct: 298 FLVFQIEGNSFLFNMIRKIVGTLIAVLRGAR-ETLFAEALSPDRRVVCPLAPGPYLYLFL 356
Query: 443 NSF-----------SVRTRP 451
+++ SVR RP
Sbjct: 357 STYRRYDTVVHGSRSVRFRP 376
>gi|71423309|ref|XP_812417.1| pseudouridylate synthase I [Trypanosoma cruzi strain CL Brener]
gi|70877194|gb|EAN90566.1| pseudouridylate synthase I, putative [Trypanosoma cruzi]
Length = 655
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA--WARSS 137
+ L V Y GT YRGLQ+Q + T+EG L A+ G I G ++ +ARS
Sbjct: 24 LGLCVMYCGTGYRGLQLQTHAPTHHTVEGVLIQAMKDVGLIEAIERGRVKGDMHHFARSC 83
Query: 138 RTDKGVHSLATMICL-----KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
RTD+ VH++ +ICL ++E K + + +N LP I++ + P
Sbjct: 84 RTDRAVHAVRNLICLFVFTERIEALGGCEK-------IKEMLNTTLPLTIRIARVTPLMG 136
Query: 193 SFDPRRECNLRKYSYLLPA 211
+F PR CN R Y YL+PA
Sbjct: 137 NFIPRFSCNRRVYHYLIPA 155
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I G SF+ + IRK+VGT +AV R + +L+ R+V PLAP L+L
Sbjct: 326 FLVFQIEGNSFLFNMIRKIVGTLIAVLRGAR-ETLFAEALSPDRRVVCPLAPGPYLYLFL 384
Query: 443 NSF-----------SVRTRP 451
+++ SVR RP
Sbjct: 385 STYRRYDTVVRGSRSVRFRP 404
>gi|303288467|ref|XP_003063522.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455354|gb|EEH52658.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 419
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 9/107 (8%)
Query: 349 WLYETDEADKLSASHFRKIFSCSCGKLEKSL---------GFGYVEISISGESFMLHQIR 399
WL D+ D + H R + S + G +E + G +V + ++G+SF+L+QIR
Sbjct: 175 WLLGRDDRDLVGKRHARVVSSFTAGDVEVAAGDGDDDDRPGEPFVRVVVAGDSFVLYQIR 234
Query: 400 KMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
KM+ TAV V +PR+ + ++LA+ +R P+AP+ L+LR FS
Sbjct: 235 KMIATAVGVALGWIPREFIPVTLARPARAATPIAPASTLYLREAEFS 281
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 56/120 (46%), Gaps = 21/120 (17%)
Query: 154 MEIPPDAWKDD-----PYGIDLAKRVNAHLP--RNIKVFSILPSQRSFDPRRECNLRKYS 206
ME +W D P G+ +R+NA LP ++VF+ + +SF RR C R Y
Sbjct: 1 METDERSWDADVEAREPGGV--VERINAKLPATSGVRVFAAYSAPKSFQARRACARRTYH 58
Query: 207 YLLPAEVIGIN---------SQLTAAEIDSH---ISDFNAILNEFEGEHPFHNYTERSKY 254
YLLPA V+G+ E S + F L FEG H FHNYT RS+Y
Sbjct: 59 YLLPARVLGLGVSGEREVSWPGAPGGETRSSEDVLDAFRDALRAFEGSHYFHNYTRRSRY 118
>gi|336381199|gb|EGO22351.1| hypothetical protein SERLADRAFT_473077 [Serpula lacrymans var.
lacrymans S7.9]
Length = 421
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 61/234 (26%)
Query: 94 LQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLK 153
+Q+Q D + TIEG L AL +AG + + N + K++ R++RTD GVH+ ++ +K
Sbjct: 1 MQIQPD---VRTIEGVLFGALVRAGAVSQDNADDPVKVSLGRAARTDAGVHAAGNLVSMK 57
Query: 154 M--EIPPDAWKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ IP G+ D+ R+N LP I+++ + Q SF+ R C+ RKY+Y P
Sbjct: 58 LITTIP---------GVNDIVARINEELPPEIRLWGHVRVQNSFNARMSCDSRKYTYFFP 108
Query: 211 A-------------EVIGINSQLTAAEID----SH------------------------- 228
+ +G ++ T A D SH
Sbjct: 109 SYLLIPPKPGSGLHRTLGQHADSTKAPSDAIKPSHPFWGTGDTSTREDDLERKRKWRISA 168
Query: 229 --ISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
I ++++EG H FHN+T ++ + ++ R K+ + S+ AV+ E
Sbjct: 169 DSIERLRLTVHKYEGTHNFHNFTVGREFGDRSNQ--RHMKKIEISEPAVYGGTE 220
>gi|308161589|gb|EFO64028.1| Pseudouridylate synthase 1 [Giardia lamblia P15]
Length = 467
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 66 NSSDDKWEPVRKK------KVALRVGYVGTDYRGLQMQRDEHS---LSTIEGELETALFK 116
+D + EPV K+ +A+ +GYVGT Y G Q Q + + T+EGE+ TA+
Sbjct: 21 GGTDMREEPVPKQFRPKLVHIAVALGYVGTRYSGSQWQAPSATHPDIRTVEGEIYTAIEA 80
Query: 117 AGGIRESNYG-NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
AG + YG +++ I W R SRTDK V + + P +DL + +
Sbjct: 81 AGLL----YGRDIKSIGWTRCSRTDKSVSAAMAVFSFF----------GPGHLDLVQLLQ 126
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
HLP++I +F + F + C R Y Y++P
Sbjct: 127 PHLPKDISIFGTVRVPPKFSAKMACTSRTYEYMMP 161
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL---AKHSRIVLPLAPSEVLF 439
Y +I+I G++F+++QIR+M+G VA+ R +P L + KH RI APS L
Sbjct: 311 YTKITICGQAFLMYQIRRMMGALVAILRGWIPVSFLYFAFQTRTKHLRI--STAPSPYLL 368
Query: 440 LRANSF 445
L+ ++
Sbjct: 369 LKQPNY 374
>gi|300175206|emb|CBK20517.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 121/274 (44%), Gaps = 33/274 (12%)
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R+N+ LP +I+VF IL + ++F+ + C+ R+Y Y+LP E + S I IS
Sbjct: 25 RINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFSSTPPLSIREDISHN 84
Query: 233 NAILNEFEG------EHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEE 286
E E EHP + + + +P RV K + ++ + + S E
Sbjct: 85 WKEFVENEAYLQKCREHPEESID--NPFEDRPDNRQRV-KSLQIAQQLLLNEASFSTYTE 141
Query: 287 DGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIR 346
D +D GG + D+ A + +S + C G + ++ +V +
Sbjct: 142 DA----------QDRSFGGCVVKDEWPAYLSLALSRLRA---CMSLFVGTHNFHNYTVGK 188
Query: 347 ARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAV 406
+ AD + H I ++ L Y+ + + G+SFMLHQIRKM+G A+
Sbjct: 189 S-------SADSSAQRHILGISVSDPIRIHDGL---YIRVCLEGQSFMLHQIRKMIGIAI 238
Query: 407 AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
V R + SL++ + + P+APS LFL
Sbjct: 239 EVARGRCSLHTVNSSLSRGT-MFTPMAPSTGLFL 271
>gi|300123845|emb|CBK25116.2| unnamed protein product [Blastocystis hominis]
Length = 282
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 121/274 (44%), Gaps = 33/274 (12%)
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R+N+ LP +I+VF IL + ++F+ + C+ R+Y Y+LP E + S I IS
Sbjct: 25 RINSCLPSDIRVFKILRTTKNFNAKNFCDRRQYEYILPIETLSPFSSTPPLSIREDISHN 84
Query: 233 NAILNEFEG------EHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEE 286
E E EHP + + + +P RV K + ++ + + S E
Sbjct: 85 WKEFVENEAYLQKCREHPEESID--NPFEDRPDNRQRV-KSLQIAQQLLLNEASFSTYTE 141
Query: 287 DGFSKVEESDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIR 346
D +D GG ++ D+ A + +S + C G + ++ +V +
Sbjct: 142 DA----------QDRSFGGCVAKDEWPAYLSLALSRLRA---CMSLFVGTHNFHNYTVGK 188
Query: 347 ARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAV 406
+ AD + H I ++ L Y+ + + G+SFMLHQIRKM+G A+
Sbjct: 189 S-------SADSSAQRHILGISVSDPIRIHDGL---YIRVCLEGQSFMLHQIRKMIGIAI 238
Query: 407 AVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
V R SL++ + + P+APS LFL
Sbjct: 239 EVARGRCSLHTANSSLSRGT-MFTPMAPSTGLFL 271
>gi|428182335|gb|EKX51196.1| hypothetical protein GUITHDRAFT_134700 [Guillardia theta CCMP2712]
Length = 706
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 51/203 (25%)
Query: 84 VGYVGTDYRGLQMQ---------RDEHSLS---------------------TIEGELETA 113
VGY+GT + G Q+Q RD+ S T+E EL
Sbjct: 196 VGYLGTKFCGSQIQLKPRSTVKRRDQPSGEMPDDVSEDTGETDGTRGFAHPTVEQELMEV 255
Query: 114 LFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR 173
+AG I N N +++ +R+SRTDKGVH+ +I +K+++ D+ G+
Sbjct: 256 CHQAGLIAVLNPENPKQLCLSRASRTDKGVHAALNVISMKLQLNRSTGHDEADGV----- 310
Query: 174 VNAHLPRNIKVFSILPSQRSFDP-----RRECNLRKYSYLLPAEVIGINSQLTAAEIDSH 228
+++V ++ SQ P R C+LR Y YLLP+ ++G + A+ID
Sbjct: 311 -------HVEVKAMTGSQYYLTPPASGARNICSLRTYEYLLPSCLLGAET----ADIDQK 359
Query: 229 ISDFNAILNEFEGEHPFHNYTER 251
+ N++L +F G F N+ R
Sbjct: 360 VDKLNSLLKKFSGNKFFINFCGR 382
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTL--SLAKHSRIVLPLAPSEVLFL 440
+V+I I SFMLHQIRKM+GT +AV +P L + +L R+ PLAP L L
Sbjct: 445 FVKIEICANSFMLHQIRKMIGTCLAVLHGSIPELYLDMPKALQGDYRLPCPLAPGSGLIL 504
>gi|154274161|ref|XP_001537932.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415540|gb|EDN10893.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 634
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 65/107 (60%), Gaps = 12/107 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KKKVA+ +GY G+ Y+G+Q+ E TIEG+L TA AG I ++N + +K + R
Sbjct: 120 KKKVAVMLGYSGSGYKGMQLSETE---KTIEGDLFTAFVAAGAISKANATDPKKSSLVRC 176
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
+RTDKGVH+ ++ LK+ + +DP ++ +++N HL I+
Sbjct: 177 ARTDKGVHAAGNVVSLKLIV------EDP---NVVQKINGHLSPQIR 214
>gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta]
Length = 444
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 9/161 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G DY G +Q D + +TIE L AL K+ I N + R
Sbjct: 91 KRHILLKFYYLGWDYHGFTVQED--NCNTIEHHLFAALLKSCCIESRESAN-----YHRC 143
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV S + +I L + ++ P+ + + K +N LP NI+ + P +F
Sbjct: 144 GRTDKGVSSFSQVISLDIRSKLAPEDQGNLSNELPYCKMLNRLLPTNIRCVAWCPVASNF 203
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
R +C R+Y Y P + I++ AA+ DF I
Sbjct: 204 SARFDCKYRRYKYFFPRGNLDIDAMNKAAKYVVGDHDFRNI 244
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q++ +L T+EG + A+ K I N + + ++R RT
Sbjct: 66 IALKFAYLGWNYNGLAIQKEPTALPTVEGVIVDAMNKCKLIPSINPSDFK---FSRCGRT 122
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L + + P+ + D I +N LP +I++ ++ L
Sbjct: 123 DKGVSAMNQVISLNVRSNLTPEQQMNSEFDSKEIQYINILNQLLPDDIRISAVCLRPPTG 182
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + I++ TAA F+GEH F N+ +
Sbjct: 183 FDARFSCQYRHYKYLFKKDGLNISAMETAASY-------------FKGEHDFRNFCK 226
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W V + R+ Y+GT+Y G+ Q + ++ TIE E A + I+ N +
Sbjct: 19 WSVVTISRFLFRISYIGTNYYGMAYQNE--TIPTIEREFYNACLRLKLIK-----NREDC 71
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
R RTDKGVHS I + + + PY + + +N LP +I++
Sbjct: 72 DLIRCGRTDKGVHSTGNYISINLRTRDTS----PY--NYQEMINGVLPWDIRILGFCQVN 125
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHISDFNAILNEFEGEHPFHNYTE 250
+F R +C+ R Y Y+ P + I +++ +HI N +F G H F +
Sbjct: 126 NNFSARFDCDSRVYKYIFPIDQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFC- 184
Query: 251 RSKYRRKPHKT 261
+ + +P++T
Sbjct: 185 KMDIKNRPNQT 195
>gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1]
gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1]
Length = 276
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 76/167 (45%), Gaps = 20/167 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A R+GY+GT + G Q Q D+ T+EGE+E A +AG I L A S R
Sbjct: 12 RLAFRIGYIGTSFFGSQYQPDQR---TVEGEIEAACLRAGIITSRQVSRL-----ALSGR 63
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPR 197
TD+GVH+ ++ L P DLA R +N LP +I V + + SF PR
Sbjct: 64 TDRGVHAKCQILALSTHNP-----------DLAVRALNGQLPPDIWVSAWAYAPESFYPR 112
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ +R Y Y IN+ AA + DF G+ P
Sbjct: 113 YDVIIRTYRYYFSRPPSDINAMRDAAGLFLGTHDFRCFARIEPGKSP 159
>gi|156537085|ref|XP_001602396.1| PREDICTED: tRNA pseudouridine synthase 3-like [Nasonia vitripennis]
Length = 421
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G DY+G Q D + STIE L AL K+ I N + R
Sbjct: 70 KRHIFLKFYYLGWDYQGFAAQED--TTSTIEYYLFAALTKSCLIESRETSN-----YHRC 122
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDL--AKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV + + +I L + + K D +L K +N LP+NI+ FS P+
Sbjct: 123 GRTDKGVSAFSQVISLDIRSRLEPEKQDNLSDELHYCKMLNRLLPKNIRCFSWSPAHPEM 182
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF---------NAILNEF 239
R +C R Y Y P + I + AA++ DF N ++N F
Sbjct: 183 SARFDCKFRSYKYFFPRGNLNIEAMDKAAKLTVGSHDFRNLCKMDVANGVVNFF 236
>gi|300706061|ref|XP_002995341.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
gi|239604377|gb|EEQ81670.1| hypothetical protein NCER_101809 [Nosema ceranae BRL01]
Length = 344
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 87/212 (41%), Gaps = 42/212 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K K +GY+GT Y GLQ+ D +TIE + LF I N + KI S
Sbjct: 2 KIKAGFCIGYIGTGYSGLQLNGD---YNTIEKAISECLFSCSAISSQNAKDPSKIHLKSS 58
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
SRTDKGVH+ +I K+E D + K +NI ++ IL +SF
Sbjct: 59 SRTDKGVHAAFNLISCKIECQITDVF--------FQKLKECLFSKNIYLYKILRLTKSFI 110
Query: 196 PRRECNLRKYSYLLPAEVIGIN------SQLTAAEID------------------SHISD 231
P R Y Y+LP + + S L A +++ +++D
Sbjct: 111 PTNLTISRTYEYILPTYFLAKSNFSAECSDLIAKDLNRDKMTKREYNEKDIEQIFGYLAD 170
Query: 232 ------FNAILNEFEGEHPFHNYTERSKYRRK 257
F I +F G FHN+T S ++ K
Sbjct: 171 KDDIKYFCDIFTKFLGTKNFHNFTTLSNHKGK 202
>gi|7670391|dbj|BAA95047.1| unnamed protein product [Mus musculus]
Length = 257
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDK------------------GVHSLATMICLKMEIPPDAWKDDPYGIDLA 171
K+++ R +RTDK GV + ++ LK+ W D D+
Sbjct: 132 KMSFQRCARTDKPLRTSACFCLYTGFLFHWGVSAAGQVVSLKV------WLID----DIL 181
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
++N+HLP +I++ + F+ + +C+ R Y Y+LP
Sbjct: 182 DKINSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYMLP 220
>gi|399215855|emb|CCF72543.1| unnamed protein product [Babesia microti strain RI]
Length = 270
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K+ +R Y+GT+Y G Q+ + T+E L AL K+G I + + +
Sbjct: 9 ISGNKILVRYSYIGTNYHGSAYQK---GVDTVESHLINALTKSGLIVD-----IYNCDYC 60
Query: 135 RSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
+ SRTDKGVH+ A I L IP + R+N +LP +I + I P
Sbjct: 61 KCSRTDKGVHARANYISLFALNNIPKLHLMN-------INRLNKYLPNDICITKIFPVHS 113
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
+F R +C R Y Y + + I AA++ F GEH F +++R+
Sbjct: 114 TFSCRYDCKGRIYKYFFNSTNLKICEMAEAAQL-------------FIGEHDFKLFSKRN 160
Query: 253 K 253
+
Sbjct: 161 R 161
>gi|145529301|ref|XP_001450439.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418050|emb|CAK83042.1| unnamed protein product [Paramecium tetraurelia]
Length = 297
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 114 LFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD-------DPY 166
L K + E N +++KI +R +RTD+GVH+L ++ LK++I D +
Sbjct: 20 LLKQNLVSELNADSIKKIGVSRGARTDRGVHALCNVVSLKLQIDQKYCSSMTNNKLVDKW 79
Query: 167 GID---LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAA 223
ID L + +N+ LP +IKV +I +SF+ + + + R Y+Y+ P+
Sbjct: 80 NIDWDLLIQELNSQLPSDIKVNAIKHVTQSFNVKHQADQRMYNYISPSF----------- 128
Query: 224 EIDSHISDFNAILNEFEGEHPFHNYTERSKY 254
S + I N++ G H FHNYT + +Y
Sbjct: 129 ---STVDYVQNICNQYLGTHNFHNYTSKKEY 156
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 377 KSLGF---GYVEISISGESFMLHQIRKMVGTAVAV--KRKLLPRDILTLSLAKHSRIVLP 431
++L F Y++ +I G SFM HQIRK++GT + ++K L T S +HS L
Sbjct: 171 QNLNFHNENYLKFTILGNSFMYHQIRKIIGTIYQIVQEKKDLSFIQDTFSQQQHS---LY 227
Query: 432 LAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEF 474
+AP + L+LR F+ +++T + + K++D F
Sbjct: 228 IAPQQGLYLREIKFTGYNMKKDIPQKLETDFKQQ---KLIDAF 267
>gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7]
Length = 284
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 31/215 (14%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA 132
E +K+++AL++GY+GT+Y G Q+Q +L TIEGEL AL K G I + N
Sbjct: 3 EERQKERIALKIGYIGTNYHGFQIQ-PRSALPTIEGELFKALKKQGIIEDRKTAN----- 56
Query: 133 WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQ 191
++ + RTD GVH+LA ++ P + +N+ LP +I V +I
Sbjct: 57 YSAAGRTDTGVHALAQVVSF----VTSNQNTTP------RMINSVLPDGSIWVSAIAKPY 106
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT-- 249
F+ RR+ R+Y Y L E+D I+ F G H F N++
Sbjct: 107 SGFNARRDAISREYRYYL----------FLQTELDLDITRMREASELFVGTHDFSNFSLL 156
Query: 250 ERSKYRRKPHKTGRVSKR--AKASKDAVFSRVEES 282
+ ++Y + T R KR K K V +E S
Sbjct: 157 QGNEYEVAGYSTIRDIKRIEVKTKKPFVIIDIEAS 191
>gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC
35061]
gi|226708656|sp|A5ULI2.1|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii
ATCC 35061]
Length = 290
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ AL++GY+GT++ G Q Q D L T+E EL L K G I +L+K + +
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPD---LRTVEEELIYHLRKLGYI-----DDLKKSRFRIAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVHSL +I + E +N LP +I++ + P + F PR
Sbjct: 54 RTDAGVHSLGNVISFQSEKEVR-----------VNEINNSLPDDIQILAKAPVRFGFKPR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
+R+Y Y+L + + AEI F+G H F N+T+R
Sbjct: 103 Y-AEMRQYRYVLFRSDLDLYKLNEVAEI-------------FKGTHNFTNFTKR 142
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 101/233 (43%), Gaps = 37/233 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+++ALR+ Y+G D G Q E +T+E L AL KA ++ + +++R
Sbjct: 80 RRIALRLSYLGWDMHGFASQ--EKIDNTVEAHLFDALIKACLVKSR-----ESCSYSRCG 132
Query: 138 RTDKGVHSLATMICLKMEIPPDAW------KDDPYGIDLAKR----------VNAHLPRN 181
RTDKGV + +I L + D ++ G D + +N LP+
Sbjct: 133 RTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSVGRDTKGKTMKEILYVDILNKVLPKE 192
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEG 241
I+V + P + FD R C+ RKY YL P +A +D I N + EG
Sbjct: 193 IRVLAWAPVELDFDARFSCSYRKYKYLFP-----------SANLD--IDLMNLASKKLEG 239
Query: 242 EHPFHNYTERSKYRRKPHKTGRV-SKRAKASKDAVFSRVEESEGEEDGFSKVE 293
EH F N+ + T + S + + +A +S E++ ++ G+ E
Sbjct: 240 EHDFRNFCKMDVANGVIQFTRNITSFKVQKVSNATYSAPGENKAKQRGYEMCE 292
>gi|156082175|ref|XP_001608576.1| pseudouridylate synthase 1 [Plasmodium vivax Sal-1]
gi|148801515|gb|EDL42914.1| pseudouridylate synthase 1, putative [Plasmodium vivax]
Length = 587
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 132/340 (38%), Gaps = 96/340 (28%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFK----AGGIRESNYGNLQ 129
P KK AL VGYVG+ Y G Q Q + TIE E+E L K GG R N+ Q
Sbjct: 41 PPNLKKYALCVGYVGSRYHGCQGQGKD--CMTIENEIERTLIKMNAVGGGGRRKNFNFCQ 98
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEI------------------------------PPD 159
+RS+RTD GVH+L + ++++ +
Sbjct: 99 ----SRSARTDLGVHALYNVFVYQVDLSCGGAVGGGANGDAEGVVAANADAASREVATNE 154
Query: 160 AWKDD------------PYGIDLAKR----------VNAHLPRNIKVFSILPSQRSFDPR 197
A D+ P+ LA+R +N HLP +I+ F + +SFD R
Sbjct: 155 ATTDEAAAQSATTNEATPHSAALAERTKKEKKFRQLLNEHLPEDIRCFDMHRVTKSFDAR 214
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
+ C+ R Y YL P V+ A D + F L EG + R
Sbjct: 215 KFCSFRLYEYLFPVCVLS-----EVAVRDEYRDVFGEALQVIEGR--VEELRRGKRRRGG 267
Query: 258 PHKTGRVSKR------AKASKDAVFSRVEESEGEED--------------GFSKVEESDG 297
P K G + + A A K A V E GE+D G +V E G
Sbjct: 268 PQKGGGEAAQQSGGDVAAAQKGA--DEVAEETGEDDAAQQSGGDVAAAQKGADEVAEETG 325
Query: 298 EEDLGI--GGEISSDDEKANQNSMVSGVHQEDCCNQHANG 335
E+D GG++++ + A++ + +G ED Q + G
Sbjct: 326 EDDAAQQSGGDVAAAQKGADEVAEETG---EDDAAQQSGG 362
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + I G+SF++HQIRKM+ +V RK + + L + + L P+E L L
Sbjct: 481 FVSVQILGQSFLMHQIRKMLTLSVETFRKATCVNSIYYCLNAGEYVPISLFPAEGLMLIC 540
Query: 443 NSFSVRTRPGVTRPEMQTMV--ESEEILKM 470
F+ P+ + ESEE+L+
Sbjct: 541 PFFNAYNEKVCNPPQSPPICFEESEEVLRF 570
>gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii
DSM 2375]
gi|222434713|gb|EEE41878.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2375]
Length = 288
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ AL++GY+GT++ G Q Q D L T+E EL L K G I +L+K + +
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPD---LRTVEEELIYHLRKLGYI-----DDLKKSRFRIAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVHSL +I + E +N LP +I++ + P + F PR
Sbjct: 54 RTDAGVHSLGNVISFQSEKEVR-----------VNEINNSLPDDIQILAKAPVRFGFKPR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
+R+Y Y+L + + AEI F+G H F N+T+R
Sbjct: 103 Y-AEMRQYRYVLFRSDLDLYKLNEVAEI-------------FKGTHNFTNFTKR 142
>gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
Length = 288
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ AL++GY+GT++ G Q Q D L T+E EL L K G I +L+K + +
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPD---LRTVEEELIYHLRKLGYI-----DDLKKSRFRIAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVHSL +I + E +N LP +I++ + P + F P
Sbjct: 54 RTDAGVHSLGNVISFQSEKEVR-----------VNEINNSLPDDIQILAKAPVRFGFKP- 101
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R +R+Y Y+L + + AEI F+G H F N+T+R
Sbjct: 102 RYAEMRQYRYVLFRSDLDLYKLNEVAEI-------------FKGTHNFTNFTKR 142
>gi|66356668|ref|XP_625512.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
gi|46226500|gb|EAK87494.1| Pus1p-like type II pseudousynthas TruA [Cryptosporidium parvum Iowa
II]
Length = 501
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 101/242 (41%), Gaps = 73/242 (30%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQ----RDEHSLSTIEGELETALFKAGGIRESNYGN- 127
E + K + GY G+DY G+Q+Q + L TIEGE+E L K G SN N
Sbjct: 3 EVIPMKTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFLSNEQND 62
Query: 128 -----LQKIAWARSSRTDKGVHSLATM----------------------------ICLKM 154
L+KI W+R RTDKGVHS+ + IC ++
Sbjct: 63 DQGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKINDELELILKNKDVDEKIIEICKRL 122
Query: 155 E----------------IPP-------------DAWKDDPYGID-LAKRVNAHL-PRNIK 183
+ I P D + D+ +D + ++N L IK
Sbjct: 123 KEERDILNKNGVDKIQSINPLLGGASLVLKNNLDEFLDELLILDYIVTKLNELLESTKIK 182
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEV---IGINSQLTAAEID-SHISDFNAILNEF 239
VF I ++FD R +C+ R+Y YL+P + + IN+ E++ + +S F LNE
Sbjct: 183 VFKIFRVTKNFDARTDCSRRQYEYLMPEFLLKHVNINNDDFKEELNKASLSRFEKGLNEL 242
Query: 240 EG 241
+
Sbjct: 243 KN 244
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++I I G+SF+LHQIRKMV A+ + R P + + L + + LAPS+ L L
Sbjct: 384 IKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLP-DKFSIHLAPSQGLLL 439
>gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus]
Length = 345
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G DY G +Q D + TIE L TAL K+ I N + R
Sbjct: 16 KRHILLKFYYLGWDYHGFTVQEDNND--TIEHHLFTALLKSCCIESRESAN-----YHRC 68
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV S + +I L + + P+ + + K +N LP NI+ + P +F
Sbjct: 69 GRTDKGVSSFSQVISLDIRSRLEPENQHNLSEELPYCKILNRLLPTNIRCIAWCPVSPNF 128
Query: 195 DPRRECNLRKYSYLLPAEVIGINS 218
R +C R Y Y P + I++
Sbjct: 129 SARFDCKYRTYKYFFPKSNLDIDA 152
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 99/209 (47%), Gaps = 25/209 (11%)
Query: 51 KSSPSVSHTLTRPTPN---SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIE 107
K PS++ + T+ + N S + + ++ +AL+ Y+G +Y GL +Q++ L T+E
Sbjct: 54 KLKPSLASSETKASKNRKPSREFDFSKYSRRFIALKFAYLGWNYNGLAVQKEPTPLPTVE 113
Query: 108 GELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM-----EIPPDAWK 162
G + AL K + + + + ++R RTDKGV +++ +I L + E K
Sbjct: 114 GVIIEALNKCKLVPSLDPHDFR---FSRCGRTDKGVSAMSQVISLFVRSNLSEEEQSDPK 170
Query: 163 DDPYGIDLAKRVNAHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLT 221
+D I +N LP +I+V ++ L + FD R C R Y YL + + +
Sbjct: 171 NDSKEIQYVNILNQLLPEDIRVSAVSLRPPKGFDARFSCQYRHYRYLFHKDGLDVGRMDQ 230
Query: 222 AAEIDSHISDFNAILNEFEGEHPFHNYTE 250
AA + F+GEH F N+ +
Sbjct: 231 AAAL-------------FKGEHDFRNFCK 246
>gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 234
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 34/186 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+++AL Y G +Y GL QR+ T+E E+ AL K + N + +W RS
Sbjct: 29 KRRIALMFMYFGWEYNGLVEQRE--IARTVEEEMRKALIKTKLVE-----NWENCSWNRS 81
Query: 137 SRTDKGVHSL---ATMICLKMEIPPDA--WKDDPYG---------IDLAKRVNAHLPRNI 182
RTDKGV + A++I E + W + + + K +N+ LP NI
Sbjct: 82 GRTDKGVSAFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGELQYVKMLNSTLPTNI 141
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P R+F R C R Y+Y P I + A + GE
Sbjct: 142 RVLAWAPVPRNFSARYNCTQRTYTYAFPRTNFNIEAMRQACQF-------------LVGE 188
Query: 243 HPFHNY 248
H F N+
Sbjct: 189 HDFRNF 194
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q+D L T+EG + A+ K R Q ++R RT
Sbjct: 84 IALKFAYLGWNYNGLAIQKDPTPLPTVEGTILEAMNKC---RMVPSMVPQDYKFSRCGRT 140
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + P +D D I +N LP +I++ +I L +
Sbjct: 141 DKGVSAMNQVISLRVRSNLTPQEQEDPANDAREIPYIHILNQLLPDDIRISAICLRPPKG 200
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + ++ AA + +EGEH F N+ +
Sbjct: 201 FDARFSCKYRHYKYLFNKSGLDLSKMEEAARL-------------YEGEHDFRNFCK 244
>gi|353237530|emb|CCA69501.1| related to DEG1-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 423
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 101/231 (43%), Gaps = 47/231 (20%)
Query: 50 SKSSPSVSHTLTRPTPNSSDDK---WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTI 106
SK P+ + T PT + ++ + ++ ++K+AL+ Y G DY GL Q L T+
Sbjct: 21 SKKKPT-AQTENGPTSHPNNPRLFNFQAYAQRKIALKFCYHGWDYNGLAYQVTPTPLPTV 79
Query: 107 EGELETALFKAGGI-RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI--------- 156
EG L AL KA I RE+ + + W+R RTD+GV S ++ L+M
Sbjct: 80 EGVLFDALCKARLIDREAGF---EGCDWSRCGRTDRGVSSAGQVVALRMRCSLRPVETVQ 136
Query: 157 --------PPD--AWKDDPYGIDL--AKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRK 204
PP + K +P +++ + +N LP +I+V + P +F R C R
Sbjct: 137 PFEEAEVTPPTQPSTKSEPPELEVKYIQVLNRILPPSIRVLAWAPVDDTFSARFNCRYRH 196
Query: 205 YSYLL-----PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
Y Y PA + I+ AA + GEH F N+ +
Sbjct: 197 YKYFFQPLNPPASPLNIDKMRNAASL-------------LVGEHDFRNFCK 234
>gi|296004937|ref|XP_002808812.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
gi|225632204|emb|CAX64089.1| pseudouridylate synthase, putative [Plasmodium falciparum 3D7]
Length = 556
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 141/347 (40%), Gaps = 46/347 (13%)
Query: 174 VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD-- 231
+N HLP +IK F I +SFD R+ C+ R Y YL P V L+ +++ +
Sbjct: 223 LNDHLPCDIKCFKIYKVTKSFDARKFCSFRFYEYLFPVYV------LSEVQVNEKYKETF 276
Query: 232 FNAILNEFEGEHPFHNYTERSKYR---RKPHKTGRVSKRAKASKDAVFSRVEE------- 281
AIL+ E Y +R K R+ ++ + K +++ F +
Sbjct: 277 HQAILDIDE-------YVQRCKEEKRTRRNNEKNHIDSTNKENENIYFKNGDNIDSMNST 329
Query: 282 SEGEEDGFSKVEESDGEEDLGIGGEISSD--DEKANQNSMVSGVH-QEDCCNQHANGLKD 338
+ FS + D E I I D DE + S H +ED + N D
Sbjct: 330 TNNNSKDFSCTK--DNTEQPNIVENIKRDIIDE-----DIFSIKHFKEDLNEEELNTFFD 382
Query: 339 QNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQI 398
++ V + T + + F K F S KL + ++ + I G+SF++HQI
Sbjct: 383 IFNNYVGYHNFHCFTKKKIDQTTYRFIKYFDVSTVKL---FDYHFLSVKILGQSFLMHQI 439
Query: 399 RKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEM 458
RKM+ AV RK + + L + I + L PS+ L L F+ +P
Sbjct: 440 RKMITLAVETYRKATSINSIYYCLNTKNYIPITLFPSDGLMLICPYFNAYNEKVCKQPHT 499
Query: 459 QTMV--ESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEK 503
+ E+E+I++ + ++ ++ W EW++ + K
Sbjct: 500 LPIYFEETEDIMEFKKNKIGKCIIEKMK------QNVWKEWLQRINK 540
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK AL +GY+G+ Y G Q Q + + TIE LE L K I++ + +RS+
Sbjct: 51 KKYALCIGYIGSQYHGCQGQGE--NCETIENTLERTLLKINAIKKKKFFKNFNFCLSRSA 108
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDD 164
RTD+GVH+L + ++I K++
Sbjct: 109 RTDQGVHALFNIFVYNVDINCTNMKNE 135
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 83/182 (45%), Gaps = 34/182 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+G+ YRG Q+Q +STIEG++ AL I + + + S R
Sbjct: 2 RVALKIAYIGSSYRGSQVQ---PGVSTIEGKIFEALQSLEIIEDPSSAR-----FVSSGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH++ ++ + P A + + +N+ LP +I +S F PRR
Sbjct: 54 TDTGVHAMGQVVAFDTDKPKLA---------IPRVINSKLPGDIWAWSRAEVDSDFHPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY----TERSKY 254
R Y Y+ P+ +D+ IS A + EG H F N+ T RS
Sbjct: 105 YAINRTYRYITPS-------------MDADISKLRAACSILEGSHDFANFCFRDTGRSTI 151
Query: 255 RR 256
RR
Sbjct: 152 RR 153
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
++P N D +R+ +AL+ Y+G +Y+GL +QR+ L TIE ++ AL + I
Sbjct: 33 SKPRKNEVDFSTATIRQ--IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMI 90
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAW---KDDPYGIDLAKRVN 175
N + A++R RTDKGV ++ +I L + + P+ ++D +D +N
Sbjct: 91 PSLNPID---CAFSRCGRTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILN 147
Query: 176 AHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA 234
LP +I++ + L + FD R C R Y Y+ E + + S AA + + DF
Sbjct: 148 QLLPSDIRIHGVCLRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRN 207
Query: 235 ILNEFEGEHPFHNYT 249
+ +G NYT
Sbjct: 208 FC-KVDGAKQMTNYT 221
>gi|294949997|ref|XP_002786409.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
gi|239900701|gb|EER18205.1| tRNA pseudouridine synthase A, putative [Perkinsus marinus ATCC
50983]
Length = 427
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 101/202 (50%), Gaps = 29/202 (14%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHS---LSTIEGELETALFKAGGIRES 123
++ + P++ VAL GY G +G+Q+Q +E STIEG + AL E
Sbjct: 64 AAQQRGPPLKTHLVAL--GYSGEGLKGMQIQTNEKGEEIHSTIEGIFQKALLATNLSTEE 121
Query: 124 NYGNLQKIAWARSSRTDKGVHSLATM------ICLKMEIPP---DAWKDDPYGIDLAKRV 174
+ +K+ ++R++RTDKGVH+ + + L +P DA + + + D K V
Sbjct: 122 ILADKKKLKFSRAARTDKGVHAALNILALALPVTLDKTLPQGEGDATR-NVWTFDEKKNV 180
Query: 175 NA----HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHIS 230
A P N++VF I FD R++C R+Y YLLP ++ + AA+++
Sbjct: 181 KALNDFLEPLNMQVFGIQRVSNKFDARKQCERRRYEYLLPE--FALDGKADAAKLEE--- 235
Query: 231 DFNAILNEFEGEHP-FHNYTER 251
+++++ G++ F N+T +
Sbjct: 236 ----VMSQYVGKNKNFFNFTAK 253
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S +C E ++ I + G+SF+LHQIRKM+G AV V R P + LA
Sbjct: 263 RHIISITCQPTEIDAN-TFIRIQLVGQSFLLHQIRKMIGLAVEVCRGSAPEGAIEECLAA 321
Query: 425 HSRIVLPLAPSEVLFLRA---NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLP 481
R + LAP+E LFL + ++ GV ++ V E+I ++F V P
Sbjct: 322 KERKHIHLAPAEGLFLDRVYFDCYNTGKTNGVDTVPIEPQVWEEDI----EDFKRRVLYP 377
Query: 482 EVSKFLDATKSPWTEWIENL 501
VSK + W +ENL
Sbjct: 378 IVSKSVVPKTREWI--VENL 395
>gi|225678874|gb|EEH17158.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb03]
Length = 547
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD 164
TIEG+L TA AG I ++N + +K + R +RTDKGVH+ ++ LK+ I D+
Sbjct: 77 TIEGDLFTAFVAAGAISKANATDPKKSSLVRCARTDKGVHAAGNVVSLKL-IVEDS---- 131
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
D+ +++N HL I+V+ I + +SF + C+ R Y YL+P
Sbjct: 132 ----DVVQKINNHLSPQIRVWGIEVTNKSFSSYQLCDSRVYEYLIP 173
>gi|340054494|emb|CCC48791.1| putative pseudouridylate synthase I, fragment, partial [Trypanosoma
vivax Y486]
Length = 525
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA- 132
P + L V Y GT YRGLQ+Q + T+EG L AL G + G + A
Sbjct: 18 PAGHSLIGLCVFYCGTAYRGLQIQTHAPTHHTVEGVLIQALRDIGVVESLENGRIGGSAH 77
Query: 133 -WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGI--DLAKRVNAHLPRNIKVFSILP 189
ARS RTD+GVH++ ++ L + K + G ++ +NA LP ++V +
Sbjct: 78 HLARSCRTDRGVHAVRNVVSLFVR----NEKIEAVGGCENITDLMNASLPNTVRVARVTH 133
Query: 190 SQRSFDPRRECNLRKYSYLLPA 211
+F PR CN R Y Y++PA
Sbjct: 134 LMGNFIPRFCCNRRVYRYMIPA 155
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 373 GKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAV---KRKLLPRDILTLSLAKHSRIV 429
G+L + Y I G SF+ + IRK+VG +AV R+ L D+L+ + R
Sbjct: 307 GQLLNATLLPYFVFQIEGRSFLFNMIRKIVGVLLAVLRGARETLFADVLS----PYQRAA 362
Query: 430 LPLAPSEVLFLRANSF 445
PLAP LFL ++F
Sbjct: 363 CPLAPGSHLFLFFSAF 378
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA-GGIRESNYGNLQKIAWARS 136
+ +AL+ Y+G DY+GL +Q L T +E + KA +R N ++R
Sbjct: 85 RHIALKFSYLGWDYQGLALQ----GLPTDRPTVEEVIIKALQQVRLVQSANPADFLFSRC 140
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
RTD+GV ++ +I L++ + + KD D +D K +N LP +I+ +I +
Sbjct: 141 GRTDRGVSAMNQVISLRVRSRLTKEQLKDPANDNLELDYIKMLNHVLPADIRFHAICVRP 200
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ FD R C R+Y Y+ ++ + I+ AA++ F G+H F N+ +
Sbjct: 201 PKGFDARFSCQWRQYKYIFNSKGLDIDRMRKAAQM-------------FVGQHDFRNFCK 247
Query: 251 RSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFS 290
SK+ K V+S ES +E GFS
Sbjct: 248 VDG-----------SKQLKNFTREVYSTAIESLEQEPGFS 276
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 35/183 (19%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A ++ YVGT++ G Q Q + + T+ GEL A F+A GI + +K + + R
Sbjct: 2 RIAYKLAYVGTNFHGFQYQPN---VRTVAGELFKA-FRALGI------DPKKAKFRCAGR 51
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ +I + +E P + NAHLP ++ ++ F+P R
Sbjct: 52 TDAGVHAFGQVIAINVEKPI-----------FPRMFNAHLPEDVTFWAWTEVDEKFNP-R 99
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
R Y Y++PAE I++ A+++ G H F N+T++ RR+
Sbjct: 100 HAKSRTYVYVMPAEGYDISAMRKASKL-------------LLGTHDFSNFTKKFGERRRC 146
Query: 259 HKT 261
+T
Sbjct: 147 IRT 149
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 61 TRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
++P N D +R+ +AL+ Y+G +Y+GL +QR+ L TIE ++ AL + I
Sbjct: 49 SKPRKNEVDFSTATIRQ--IALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMI 106
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDAW---KDDPYGIDLAKRVN 175
N + A++R RTDKGV ++ +I L + + P+ ++D +D +N
Sbjct: 107 PSLNPID---CAFSRCGRTDKGVSAMNQVIGLNVRSRLTPEELESPENDIKELDYINILN 163
Query: 176 AHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA 234
LP +I++ + L + FD R C R Y Y+ E + + S AA + + DF
Sbjct: 164 QLLPSDIRIHGVCLRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRN 223
Query: 235 ILNEFEGEHPFHNYT 249
+ +G NYT
Sbjct: 224 FC-KVDGAKQMTNYT 237
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q++ L T+EG + A+ K R N Q ++R RT
Sbjct: 97 IALKFAYLGWNYNGLAIQKEPTPLPTVEGVILEAMNKC---RLVPSMNPQDYKFSRCGRT 153
Query: 140 DKGVHSLATMICLKM--EIPPDAW---KDDPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV +++ +I LK+ + P+ +D I +N LP +I+V ++ L +
Sbjct: 154 DKGVSAMSQVISLKVRSNLTPEEQANSDNDSKEIQYVDILNQLLPDDIRVSAVCLRPPKD 213
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL E + + AA+ +EGE+ F N+ +
Sbjct: 214 FDARFSCKHRHYKYLFNKEGLDLEKMEQAAKY-------------YEGENDFRNFCK 257
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ALRV Y+G +Y G Q+D + TIE L AL + + E + I + R
Sbjct: 58 KRKIALRVAYIGWNYIGFASQQDPERIPTIEDMLFKALKECKLVAEID----DSIDYTRC 113
Query: 137 SRTDKGVHSLATMICLKM-------EIPPD---AWKDDPYGIDLAKRVNAHLPRNIKVFS 186
RTD+GV L +I L + + PD A ++ PY +N LP +I+V +
Sbjct: 114 GRTDRGVSGLGQVIALWVRSKKLTSDPSPDLLPAEQEFPY----VDTLNRMLPPDIRVLA 169
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
P F R C R Y Y + I + FEGEH F
Sbjct: 170 WAPVPEDFSARYHCTSRTYKYFFSRGKMDIEKMRQGCKY-------------FEGEHDFR 216
Query: 247 NY 248
N+
Sbjct: 217 NF 218
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+ K +ALR Y+G +Y GL Q + L T+EG+L AL +A I++ + +++R
Sbjct: 70 KTKFIALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHLIKDPS-----TCSFSR 124
Query: 136 SSRTDKGVHSLATMICLKM---EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS-Q 191
RTDKGV ++ ++ L + E P A+ D +N LP +I+V + P+
Sbjct: 125 CGRTDKGVSAMGQVVSLNVRYSEERPIAYCD---------VLNRLLPEDIRVIAYSPNPP 175
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL Q E+D A L + GEH F N+ +
Sbjct: 176 EGFDARFSCVRRHYKYLFL-------KQYPGGELDIERMSQAAAL--YLGEHDFRNFCK 225
>gi|19074166|ref|NP_584772.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
gi|19068808|emb|CAD25276.1| PSEUDOURIDYLATE SYNTHASE 2 [Encephalitozoon cuniculi GB-M1]
Length = 345
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 96/208 (46%), Gaps = 47/208 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K +V L VGY G+ Y GLQ +D L T+E ++ L + I E N G+ +KI S
Sbjct: 2 KIRVGLLVGYDGSRYHGLQFNKD---LDTVEKKIVECLLRMDAISERNAGDPRKIHIKSS 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQRSFD 195
SRTDKGVH+ ++ +K+E+ +L + L + I ++ I+ +S
Sbjct: 59 SRTDKGVHAALNLVSVKIELGVSP--------ELVSGLRELLSKEGIHLYDIVRLTKSIV 110
Query: 196 PRRECNLRKYSYLLP------------AEVIG-------------------INSQL--TA 222
P ++ R Y Y++P EV+ I+S + T+
Sbjct: 111 PSKQAISRTYEYIVPTYFLAEGDFSREVEVLSQGDEECRGDRIGRVYPESMIDSVVGYTS 170
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTE 250
+E D+ + F+ IL ++ G FHN+T+
Sbjct: 171 SEDDTRV--FSTILQKYVGTKDFHNFTK 196
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL----TLSLAKHSRIVLPLAPS 435
G YV+ISI+G+SF+LHQIRKMV AV + R R+ + + ++H+ I +P PS
Sbjct: 220 GVEYVKISITGQSFLLHQIRKMVLFAVLLCR--YSRNAVDSKFDMVFSRHN-IHVPKGPS 276
Query: 436 EVLFL 440
E L L
Sbjct: 277 EYLLL 281
>gi|449328970|gb|AGE95245.1| pseudouridylate synthase 2 [Encephalitozoon cuniculi]
Length = 345
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 47/208 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K +V L VGY G+ Y GLQ +D L T+E ++ L + I E N G+ +KI S
Sbjct: 2 KIRVGLLVGYDGSRYHGLQFNKD---LDTVEKKIVECLLRMDAISERNAGDPRKIHIKSS 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQRSFD 195
SRTDKGVH+ ++ +K+E+ +L + L + I ++ I+ +S
Sbjct: 59 SRTDKGVHAALNLVSVKIELGVSP--------ELVSGLRELLSKEGIHLYDIVRLTKSIV 110
Query: 196 PRRECNLRKYSYLLPAEVIG-------------------------------INSQL--TA 222
P ++ R Y Y++P + I+S + T+
Sbjct: 111 PSKQAISRTYEYIVPTYFLAEGDFSREVEVLSQGDEECRGDRIGRVYPESMIDSVVGYTS 170
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTE 250
+E D+ + F+ IL ++ G FHN+T+
Sbjct: 171 SEDDTRV--FSTILQKYVGTKDFHNFTK 196
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL----TLSLAKHSRIVLPLAPS 435
G YV+ISI+G+SF+LHQIRKMV AV + R R+ + + ++H+ I +P PS
Sbjct: 220 GVEYVKISITGQSFLLHQIRKMVLFAVLLCR--YSRNAVDSKFDMVFSRHN-IHVPKGPS 276
Query: 436 EVLFL 440
E L L
Sbjct: 277 EYLLL 281
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 45/219 (20%)
Query: 53 SPSVSHTLTRPTPNSSDDKWEPVR----------KKKVALRVGYVGTDYRGLQMQRDEHS 102
SPS + T PT N+ + V+ ++ VALR+ Y+G Y+G +Q E++
Sbjct: 38 SPSSAETNCPPTGNAIKRGKKAVKNRPLDFFAHPRRHVALRLAYLGWAYQGFAVQ--ENT 95
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLK-MEIPPDAW 161
+T+E L AL K I++ N + R RTDKGV + + + ++ + PP ++
Sbjct: 96 DNTVEARLFEALHKTCLIQDRQSSN-----YHRCGRTDKGVSAFSQVTAVQSLHTPPFSF 150
Query: 162 KDDPYGIDLAKR-------------VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYL 208
K P +D K+ +N LP +I++++ P+ F R +C R Y Y
Sbjct: 151 KL-PENVDADKKSQTAVSELPYVKMLNRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYY 209
Query: 209 LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
P + + AAE +EG H F N
Sbjct: 210 FPRGSLNVELMADAAE-------------RYEGTHDFRN 235
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q++ L T+EG + A+ K I Q+ ++R RT
Sbjct: 88 IALKFAYLGWNYNGLAIQKEVTKLPTVEGTILEAMNKCKLIPSM---VPQEYNFSRCGRT 144
Query: 140 DKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
DKGV ++ +I L++ ++ P ++D I +N LP +I+VF++ L
Sbjct: 145 DKGVSAMNQVISLRVRSNLTEEEQMDP---QNDVREIQYVTILNQLLPADIRVFAVSLRP 201
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + AA+ FEGEH F N+ +
Sbjct: 202 PPGFDARFSCKARHYKYIFHNSGLNLTKMEEAAKF-------------FEGEHDFRNFCK 248
>gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
gi|121691685|sp|Q12VJ7.1|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
Length = 275
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+G+++ G Q+Q ++ T+EGEL L + G + + N + S R
Sbjct: 2 RVALKIAYIGSNFHGSQVQLND---PTVEGELFKVLKELGIMEDPRTAN-----FISSGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH++ ++ + P + + + +N+ LP I ++ +FDPRR
Sbjct: 54 TDSGVHAMGQVVAFDTDAP---------NLAMPRVINSKLPGTIWAWAHAIVPENFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
R Y Y+L E I+ +A+++ G H F N++ R
Sbjct: 105 HALSRSYRYILYGEQFDISKIRSASKL-------------LLGSHDFSNFST----SRGS 147
Query: 259 HKTGRVSKRAKASKDAVFSRVE 280
KT R+ KR +R++
Sbjct: 148 KKTVRIVKRIDIRVSGNLTRID 169
>gi|262039471|ref|ZP_06012775.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
gi|261746538|gb|EEY34073.1| tRNA pseudouridine synthase A [Leptotrichia goodfellowii F0264]
Length = 249
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 26/183 (14%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
++K + + Y G+ + G Q Q+++ T++GE+E + K N+ QKI
Sbjct: 3 KEKNIKMVYQYDGSKFYGFQRQKNK---KTVQGEIEKVILK-------NFS--QKINMIS 50
Query: 136 SSRTDKGVHSLATM--ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
S RTDKGVH+L + + +IP +A K +++N +L IK+ S+ +R
Sbjct: 51 SGRTDKGVHALGQVSNFFIDEKIPLEAIK---------RQINKNLYGEIKILSVEEIKRE 101
Query: 194 FDPRRECNLRKYSYLLPA--EVIGINSQ-LTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F+ R + R Y Y++ E+ S +T + D +I F I+ F+G++ F ++ +
Sbjct: 102 FNSRFDAKSRTYLYIMKKEEEITPFESNYITGIKNDINIEQFQKIMEIFKGKYDFSSFMK 161
Query: 251 RSK 253
+ K
Sbjct: 162 KDK 164
>gi|443913214|gb|ELU36078.1| tRNA pseudouridine synthase domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 226
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 10/119 (8%)
Query: 97 QRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156
QRD + +TIE L A+ KAG + E N + K+ R++RTD GVH+ ++ LKM
Sbjct: 55 QRDAGT-NTIENTLFNAMVKAGAVSEDNSDDPVKVNLQRAARTDAGVHAAGNVVSLKMIT 113
Query: 157 -PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
PPD DL ++N LP I+V++ + S +F+ R C+ R Y Y+ P+ +
Sbjct: 114 EPPDT-------PDLVAKLNELLPPEIRVWTFVRSTNAFN-SRACDSRVYEYMFPSSAL 164
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 20/170 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VALR+ Y+G Y+G Q E++ +T+E + AL K + N + R
Sbjct: 58 KRHVALRLAYLGWGYQGFASQ--ENTKNTVEETVFNALLKTRLVESRQTSN-----YHRC 110
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD+GV +LA +I L + + + Y + + RV LP +I+V S P SF
Sbjct: 111 GRTDRGVSALAQVISLDLRCSAEGKPEIRY-VHILNRV---LPPDIRVLSWAPVPPSFSA 166
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF---------NAILN 237
R C R Y YL P + + + AA + DF N +LN
Sbjct: 167 RFSCGSRTYRYLFPCAQLDVEAMDKAARLLEGTHDFRNLCKMDVANGVLN 216
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 31/190 (16%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + +AL++ Y+G +Y+GL Q H+ +TIE L AL I +
Sbjct: 62 WSTQTYRHIALKIAYLGFNYQGLSKQL--HTPNTIEHHLFEALKTLKLIEHED-----NC 114
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ + RTDKGV +L ++ + +P D + +N+ LP +I+V + P
Sbjct: 115 EFTKCGRTDKGVSALGQVVSFNC-------RYNPKKNDYVRLINSLLPDDIRVLAWCPVS 167
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT-- 249
+ FD R C R Y Y + + I AA F GEH F N+
Sbjct: 168 KDFDARFGCLQRTYKYYFIRQNLNIEKMKQAAA-------------HFVGEHDFRNFCKI 214
Query: 250 --ERSKYRRK 257
E + +RR+
Sbjct: 215 NEEVTNFRRR 224
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 22/181 (12%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
+E R ++AL+ Y+G DY+GL Q E + +TIE + A+ KA I +
Sbjct: 73 FESYRSHRIALKFLYLGWDYQGLANQ--ETTNNTIEDAIFNAMIKAKLIEDRVL-----C 125
Query: 132 AWARSSRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
++R RTDKGV + +I L + +D I + +N LP I++ +
Sbjct: 126 KYSRCGRTDKGVSAFGQVIALNVRSNTLVSEEEDTREEISYVRLLNKILPPEIRMLAFAR 185
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ FD R +C+ R Y Y PA+ + I AA+ +F GE F N+
Sbjct: 186 VPQDFDARFDCDTRMYKYFFPAKRMDIKLMDAAAQ-------------KFVGEKDFRNFC 232
Query: 250 E 250
+
Sbjct: 233 K 233
>gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator]
Length = 368
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L++ Y+G +Y G +Q D S +TIE L AL K+ I N + R
Sbjct: 16 KRHILLKLYYLGWNYDGFTVQED--SNATIEHHLFAALTKSCCIESRETSN-----YHRC 68
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV S +I L + ++ P+ + + K +N LP NI+ + P F
Sbjct: 69 GRTDKGVSSFCQVISLDIRSKLEPEQQSNLSKELPYCKILNKLLPTNIRCIAWCPISSDF 128
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
R +C RKY Y P + I++ A + DF I
Sbjct: 129 SARFDCKYRKYKYFFPRGNLDIDAMDKAVKYVIGEFDFRNI 169
>gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
Length = 290
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG-GIRESNYGNLQKIAWARSS 137
+VAL++ Y+GTD+ G Q Q DE T+EGEL A G ++ SNY +
Sbjct: 26 RVALKLAYIGTDFAGFQYQPDER---TVEGELFKAFESLGINVKASNYKC--------AG 74
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+ + ++ L + DA K P + +NA+LP +I V++ F+PR
Sbjct: 75 RTDAGVHAFSQVVALDVS---DAKKVLP------RVINANLPDDIVVWAWAKVPDDFNPR 125
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEF-EGE 242
+ R Y Y+L + I++ AA++ DF +F EG+
Sbjct: 126 YATS-RTYIYVLYSREYDISAMRKAAKLLLGTHDFTNFTKKFGEGQ 170
>gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 491
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA + Y+G +Y GL +Q + L T+E AL K I+E ++++
Sbjct: 126 WSKQNMRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEP----IEEV 181
Query: 132 AWARSSRTDKGVHSLATM--------ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
++R RTDKGV ++ + I L+ + P+ D ID +NA+LP +IK
Sbjct: 182 KFSRCGRTDKGVSAMNQVISINVRSNITLENQSNPEF---DDLEIDYISVLNANLPSDIK 238
Query: 184 VFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
V SI L FD R C R Y Y+ + + I A++ I DF
Sbjct: 239 VHSICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDF 288
>gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
Length = 489
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA + Y+G +Y GL +Q + L T+E AL K I+E ++++
Sbjct: 124 WSKQNMRFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEP----IEEV 179
Query: 132 AWARSSRTDKGVHSLATMICLK------MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
++R RTDKGV ++ +I + +E + DD ID +NA+LP +IKV
Sbjct: 180 KFSRCGRTDKGVSAMNQVISINVRSNITLENQSNPEFDD-LEIDYISVLNANLPSDIKVH 238
Query: 186 SI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
SI L FD R C R Y Y+ + + I A++ I DF
Sbjct: 239 SICLRPPPDFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDF 286
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VALR Y+G +Y GL +Q + L TIEG++ AL + + N Q ++R RT
Sbjct: 88 VALRFAYLGWNYNGLAIQNEPTPLPTIEGKILEALHISRLVPSMNPREYQ---FSRCGRT 144
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + P+ D D I +N LP +I+V ++ L
Sbjct: 145 DKGVSAMNQVISLRVRSNLTPEEQLDPANDRREIKYVHILNQLLPDDIRVSAVCLRPPEG 204
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + I+ A + F GEH F N+ +
Sbjct: 205 FDARFSCESRHYKYLFSNDGLDISRMQEGATL-------------FLGEHDFRNFCK 248
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 18/164 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ YVGT + G Q+Q + ++TIEGE+ AL + I++ N + R
Sbjct: 2 RVALKIAYVGTGFHGSQIQPN---VATIEGEIFRALTELEIIQDPRSANFTS-----AGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ +I A+ D + + + +N+ LP I ++ FDPRR
Sbjct: 54 TDAGVHARELVI---------AFDTDKIHLAIPRVINSKLPTAIWAWAHAEIPEDFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
RKY Y++ E I+ +A+ I + DF+ + EGE
Sbjct: 105 AAIARKYRYIMSGEQYDISRIRSASRILAGTHDFSNFCTK-EGE 147
>gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
Length = 437
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA + Y+G +Y GL Q + L T+E + L K I+E ++++
Sbjct: 68 WSKQNMRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLAKVKLIKEP----IEEV 123
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYG-------IDLAKRVNAHLPRNIKV 184
++R RTDKGV ++ +I + E+ + K+D +D +NA+LP +IKV
Sbjct: 124 KFSRCGRTDKGVSAMNQVISI--ELRSNLSKEDQANPELDDKEVDYLSILNANLPSDIKV 181
Query: 185 FSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
SI L FD R C R Y Y+ + + I+ A + I DF
Sbjct: 182 HSICLRPPEDFDARFSCISRHYRYIFKKQNLDIDLMNQGASLYQGIHDF 230
>gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior]
Length = 443
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G DY G +Q D + TIE L AL K+ I N + R
Sbjct: 73 KRHILLKFYYLGWDYHGFAVQED--NTDTIEHHLFAALLKSCCIESRESSN-----YHRC 125
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV S + +I L + + P+ + + K +N LP NI+ + P F
Sbjct: 126 GRTDKGVSSFSQVISLDVRSRLEPENQDNLSDELPYCKILNRLLPANIRCIAWCPVSSIF 185
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
R +C R Y Y P + I + AA+ DF I
Sbjct: 186 SARFDCKFRSYRYFFPRGNLDIEAMDKAAKYVIGDHDFRNI 226
>gi|410722308|ref|ZP_11361613.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
gi|410597279|gb|EKQ51909.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 31/182 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL+V Y+GTD+ G Q Q + L T+EGEL +AL K+G I NL + ++ + R
Sbjct: 3 RVALKVAYLGTDFYGFQRQPN---LRTVEGELISALKKSGAI-----SNLGQSNYSIAGR 54
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GVH+L ++ + P + +VN LP +I++ F R
Sbjct: 55 TDRGVHALGNVVSFLTDKEP-----------IINQVNDLLPMDIRILGSCRVPLGFKTRY 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ R Y Y+L +V E + + + EG H F N++ R++ R P
Sbjct: 104 -AHKRHYRYVLCRKV---------GEDEWDVDKMQGAAHLMEGTHNFLNFSRRNE--RNP 151
Query: 259 HK 260
+
Sbjct: 152 MR 153
>gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [Methanocella arvoryzae MRE50]
gi|121687867|sp|Q0W2P8.1|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [Methanocella arvoryzae MRE50]
Length = 266
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K AL++ YVGT++ G Q Q L T+E EL AL +AG I+ KIA A R
Sbjct: 2 KTALKIAYVGTNFYGSQAQ---PGLPTVESELRKALEEAGAIKLGT-----KIAMA--GR 51
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ + P + + +N+ LP+++ ++ FDPRR
Sbjct: 52 TDAGVHALGQVVAFEQADPK---------LTAPRIINSKLPKDLWAYARAEVPDDFDPRR 102
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT--ERSKY 254
R+Y Y+L A + I +L + F G H F N++ E KY
Sbjct: 103 HATSREYRYILYAPDV-IERRLKECS------------SRFLGTHDFTNFSSVEAGKY 147
>gi|290979041|ref|XP_002672243.1| predicted protein [Naegleria gruberi]
gi|284085818|gb|EFC39499.1| predicted protein [Naegleria gruberi]
Length = 483
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 38/211 (18%)
Query: 81 ALRVGYVGTDYRGLQMQRDEH-----SLSTIEGELETALFKAGG----------IRESNY 125
+ Y G + GLQ+Q E+ L TIE L L+ + G IR +
Sbjct: 102 VISFSYNGIPFNGLQIQNGENLVKHPHLLTIEAVLLDILYGSNGESDFEQDETIIRYTKS 161
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-------LAKRVNAH- 177
N + I R+ RTD+GV ++ M +P D + + L R+N H
Sbjct: 162 KNCKDIRLQRACRTDRGVSAVRNAFACVMTLPNTQNHKDTFKFNNEELCKTLNDRINNHV 221
Query: 178 ------LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHIS- 230
L IK+F+I F C R+Y Y+LP + ++S+ + ++ +
Sbjct: 222 RIKNLNLMDQIKIFNIQRVPSRFVLHHWCQFRRYLYVLPLSALDLSSRNIITKCNNIFNL 281
Query: 231 --------DFNAILNEFEGEHPFHNYTERSK 253
N +L FEG H FHN+T +K
Sbjct: 282 ETNEQKCQKLNELLGHFEGIHLFHNFTVDAK 312
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLP------------RDILTLSLAKHSRIVL 430
+V I ISG SFMLHQIR M+GT +A+ R + P D + ++L
Sbjct: 338 HVVIEISGRSFMLHQIRMMIGTVIALMRGMAPNMNTTVQDNTIVNDFFENLFKAQTEVLL 397
Query: 431 PLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDAT 490
P+APSE LFL F + +P + + + + + F V LP + K L
Sbjct: 398 PMAPSEGLFLDNLDFP-NFNANIVKPPFEPIKWTGTADEHAEIFKKDVILPNILKVL-KE 455
Query: 491 KSPWTEWI 498
K+ + W+
Sbjct: 456 KNVVSNWL 463
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG---GIRESNYGNLQKIAWARS 136
+ALR Y+G Y GL +Q++ +L T+E + + K + +Y ++R
Sbjct: 98 IALRFAYLGWKYNGLALQKEPTALPTVEETILEVMNKCKLVPSMEPLDYN------FSRC 151
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
RTDKGV ++ +I L + + P+ +D D + +N LP +I+V ++ L
Sbjct: 152 GRTDKGVSAMNQVISLTVRSNLSPEEQRDPANDHQELQYVHMINHLLPDDIRVSAVCLRP 211
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT- 249
FD R C R Y YL AE + + AA++ +EGEH F N+
Sbjct: 212 PADFDARHSCKHRHYRYLFKAEQLDLEKMREAAKL-------------YEGEHDFRNFCK 258
Query: 250 -----ERSKYRRK 257
+ + YRR+
Sbjct: 259 IDGSKQITNYRRR 271
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA + Y+G +Y GL +Q+D L T+EG + + K + Q+ ++R RT
Sbjct: 98 VAFKFAYLGWNYNGLAIQKDATPLPTVEGTILETMNKCKLVPSM---VPQEYKFSRCGRT 154
Query: 140 DKGVHSLATMICLKM--EIPPDAWKDDPYG---IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
D+GV ++ +I L++ + + D Y I +N LP +I+V ++ L +
Sbjct: 155 DRGVSAMNQVISLRVRSNLTAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRPPKG 214
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL +E + + AA+ +EGEH F N+ +
Sbjct: 215 FDARFSCKSRHYKYLFSSEGLDLERMQLAAK-------------HYEGEHDFRNFCK 258
>gi|403221454|dbj|BAM39587.1| pseudouridylate synthase [Theileria orientalis strain Shintoku]
Length = 500
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 111/298 (37%), Gaps = 99/298 (33%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHS-----LSTIEGELETALFKAGGIRESNYGNLQ 129
V K K AL GY+GT+Y G Q Q + + + T+EG +E L K G I ES
Sbjct: 66 VPKIKYALAFGYIGTNYHGYQKQVEYKTGIMDKVKTVEGTVENCLIKIGAIDESLRNMNH 125
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDD------------------------- 164
K+ ++SSRTDKGVH+ I + + + K +
Sbjct: 126 KLQMSKSSRTDKGVHAACIYIGGRFNVNIEEKKLEVTETSSEKETECSEDIEDEELSENS 185
Query: 165 -----PYGIDLAK-------RVNAHLPRNIKVF-----SILPSQ----------RSFDPR 197
DLAK +V P ++F ++LP + FD R
Sbjct: 186 TVVRKKLSSDLAKEEAEDEVKVEIKEPSKEELFIKTLNAVLPEDIRCFKIQRVTKGFDAR 245
Query: 198 RECNLRKYSYLLPAEVI------------GINSQLTA----------------------- 222
C+ RKY YLLP V+ GI +L +
Sbjct: 246 IMCSKRKYEYLLPVWVLCRKFEFPNEEHEGIYKRLESYMEENMNNKENVKAYKSEEALYE 305
Query: 223 -----AEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAV 275
E++ ++ IL ++EG FHN+T K R + T R ++ K ++ +
Sbjct: 306 EQGKYVEVEEYLEKLRQILKQYEGTKDFHNFT--VKQRLETKNTQRYIEKIKVKEEEI 361
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G V I+I G+SF+ +QIRKM+ A+ + P++ + +L K + + + PSE L
Sbjct: 363 GMKLVRITIQGQSFLYNQIRKMICLALQEYLAVAPKNAVKYALKKSATLNINTVPSEGLI 422
Query: 440 LRANSFSVRTRPGVTRPEMQTM--VESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEW 497
L + TR M + +E ++I V+ F EV K + W W
Sbjct: 423 LHHPCYDTY---NATRCSMANIPYIEYKDIKPEVETFKRQYIYAEVKKSICC--KIWEGW 477
Query: 498 IENLEKF 504
+E ++ +
Sbjct: 478 LETVKTY 484
>gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis]
Length = 420
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 34/190 (17%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K+KV ++ Y G +Y G Q D S TIE L AL I+ N + R
Sbjct: 56 KKRKVLFQITYFGWNYHGFTTQED--SCMTIEAHLFKALLTTCLIQSRETSN-----YHR 108
Query: 136 SSRTDKGVHSLATMICLKM--------------EIPPDAWKDDPYGIDLAKRVNAHLPRN 181
RTDKGV + +I + + + D+ D P+ ID K +N++LP +
Sbjct: 109 CGRTDKGVSAFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDMPHEIDYIKIINSNLPPD 168
Query: 182 IKVFSILPSQ-RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
I++ + P+Q R R +C R Y Y P I +S N +
Sbjct: 169 IQLIAWTPAQNRELSARFDCKKRTYKYFFPLGSI------------KSLSKMNEAGAKLV 216
Query: 241 GEHPFHNYTE 250
G H F N+ +
Sbjct: 217 GSHDFRNFCK 226
>gi|441661308|ref|XP_003280267.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Nomascus leucogenys]
Length = 163
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 10/112 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+ L + Y G Y G+Q TIE +L +AL ++G I E++ +++K+++ R
Sbjct: 55 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 114
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSIL 188
+RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ ++
Sbjct: 115 ARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLI 156
>gi|401826036|ref|XP_003887112.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998270|gb|AFM98131.1| pseudouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 345
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 47/208 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K + L VGY G+ Y GLQ ++ L TIE ++ L G I E N + +KI S
Sbjct: 2 KIRAGLLVGYDGSGYHGLQFNKE---LDTIEKKVVDCLLSVGAISERNAEDPKKIHIKSS 58
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQRS 193
SRTDKGVH+ +I +K+E I P +L R+ L + I ++ I+ +S
Sbjct: 59 SRTDKGVHAAFNLISVKIEVCITP----------ELVSRLRTLLSQEGIHLYDIVKLTKS 108
Query: 194 FDPRRECNLRKYSYLLP------------AEVI----------GINSQLTAAEIDS---- 227
P ++ R Y Y++P AE + GI ++S
Sbjct: 109 TVPSKQAISRTYEYVVPTFFLTEGNFSEEAEALKQKDGEHRAGGIKRDYPEDVVESVTGY 168
Query: 228 -----HISDFNAILNEFEGEHPFHNYTE 250
I F +IL ++ G FHN+T+
Sbjct: 169 RSSPDDIKAFESILQKYIGTKDFHNFTK 196
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIV-LPLAPSEVLFL 440
YV ISI+G+SF+LHQIRKMV AV + + S+A + + V +P PSE L L
Sbjct: 223 YVRISITGQSFLLHQIRKMVLFAVLLCKYSRNSVDQKFSIAFNKQNVHVPKGPSEYLLL 281
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 30/195 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK++AL++ Y+GT+Y G Q+Q + L TIEGEL +L I + N + S
Sbjct: 2 KKRMALKLAYIGTEYHGSQVQPE---LPTIEGELFKSLKNLEIIDDPKSAN-----FVSS 53
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD GVHSL ++ + P A + + +N+ LP +I ++ F+P
Sbjct: 54 GRTDTGVHSLGQVVTFDTDNPRLA---------VPRVINSQLPESIWAWAYAVVPDEFNP 104
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR 256
R R+Y Y++ E I+ TA++ G H F N+ K +
Sbjct: 105 RHGAFSRRYLYIMSGEEYDISRIRTASKY-------------LIGTHDFANFCTPVKGKS 151
Query: 257 KPHKTGRVSKRAKAS 271
R++ R K +
Sbjct: 152 TVRTVQRINIRVKGT 166
>gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
Length = 444
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W + VA + Y+G +Y GL +Q + L T+E AL K I+E ++++
Sbjct: 81 WSKQNMRFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEP----IEEV 136
Query: 132 AWARSSRTDKGVHSLATMIC------LKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
++R RTDKGV ++ +I L +E + DD ID +NA+LP +IKV
Sbjct: 137 KFSRCGRTDKGVSAMNQVISIDVRSNLSLENQANPEFDDQ-EIDYISVLNANLPSDIKVH 195
Query: 186 SI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
SI L FD R C Y Y+ + + I+ A + I DF
Sbjct: 196 SICLRPPPEFDARFSCLSCHYRYIFRKQDLNIDLMNQGANLYQGIHDF 243
>gi|396081233|gb|AFN82851.1| pseudouridine synthase 2 [Encephalitozoon romaleae SJ-2008]
Length = 345
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 43/206 (20%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K + L VGY G+ Y GLQ ++ L TIE + L + I E N + +KI S
Sbjct: 2 KIRAGLLVGYDGSRYHGLQFNKE---LDTIEKRVVECLLQVEAISERNADDPKKIHIKSS 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR-NIKVFSILPSQRSFD 195
SRTDKGVH+ +I +K+EI + +L R+ L + I +++I+ +S
Sbjct: 59 SRTDKGVHAALNLISVKIEICITS--------ELVSRLRTLLAKEGIHLYNIVRLTKSTV 110
Query: 196 PRRECNLRKYSYLLP------------AEVIG-------------------INSQLTAAE 224
P R+ R Y Y++P AE + + S +
Sbjct: 111 PSRQAISRTYEYIVPTFFLTKGDLTEEAEALKQKDGEHRIRDTKRDYPENIVESVVGHKS 170
Query: 225 IDSHISDFNAILNEFEGEHPFHNYTE 250
+ I F +IL ++ G FHN+T+
Sbjct: 171 SEDDIKAFGSILQKYIGTKDFHNFTK 196
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 24/31 (77%)
Query: 378 SLGFGYVEISISGESFMLHQIRKMVGTAVAV 408
S G YV ISI+G+SF+LHQIRKMV AV +
Sbjct: 218 SEGVEYVRISITGQSFLLHQIRKMVLFAVLL 248
>gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
Length = 279
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 32/171 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVA ++ YVGTD+ G Q Q T+EGEL L + G I G K+ + S R
Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRR---TVEGELRKGLVEKGII-----GEKTKVEF--SGR 63
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L +I +P + +P + +N+ LP ++ V++ FDPRR
Sbjct: 64 TDAGVHALGQVIAF---VPKNDKLTEP------RIINSVLPADMWVYAKAVVPDDFDPRR 114
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R Y YLL A + I+ I ++ + F G H F N++
Sbjct: 115 HAVSRTYRYLLYAPDV----------IERRIVTYSQL---FPGTHDFTNFS 152
>gi|242223970|ref|XP_002477524.1| predicted protein [Postia placenta Mad-698-R]
gi|220722803|gb|EED77277.1| predicted protein [Postia placenta Mad-698-R]
Length = 407
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--EIPPDA 160
L TIEG L AL K G + + N + K+ R++RTD GVH+ ++ +K+ IP
Sbjct: 6 LRTIEGVLFNALVKVGAVSQDNADDPIKVNLGRAARTDAGVHAAGNVVSMKLITAIP--- 62
Query: 161 WKDDPYGI-DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
G+ DL RVN LP I+++++L Q SF+ R RKY+Y P+ ++
Sbjct: 63 ------GVGDLISRVNEELPPEIRLWNVLRVQNSFNAR----TRKYTYFFPSYLM 107
>gi|317495541|ref|ZP_07953909.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
gi|316914355|gb|EFV35833.1| tRNA pseudouridine synthase A [Gemella morbillorum M424]
Length = 265
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L Y G+ Y G Q+Q + +T++ E+E AL K N + I S R
Sbjct: 2 RVVLLCRYDGSGYHGFQIQPNN---NTVQEEIEKALKKI---------NKKDIRVYMSGR 49
Query: 139 TDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ ++ E IP +AWK K +NA+LP +I++F + S F
Sbjct: 50 TDSGVHAYGQVLHFDTELNIPNEAWK---------KALNANLPADIRIFGVTTSNEDFHV 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQ-LTAAEIDSHISDFN-----AILNEFEGEHPFHNYTE 250
R + Y Y L IG N + H +FN LN F GEH F ++
Sbjct: 101 RYNSTRKTYHYKL---YIGQNVDPFLLNYVGQHKYNFNFEKAQKALNYFIGEHDFSSFCS 157
Query: 251 RS 252
++
Sbjct: 158 KN 159
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 34/175 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+AL+V Y+GT+Y G Q Q D + T+EG+L AL +AG IR Q +
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPD---VPTVEGKLLDALKEAGVIRSPGDSRFQI-----AG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD+GVH+L + E ++N LP +IKV + F R
Sbjct: 54 RTDRGVHALGNFVSFFTEEEIH-----------VNQINDLLPHDIKVLAWASVMYPFKVR 102
Query: 198 RECNLRKYSYLLP-AEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R Y Y+L E + I++ AAE F G H F N++ R
Sbjct: 103 YPLE-RHYRYILHRGESMDIDAMAKAAE-------------HFRGTHDFSNFSRR 143
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 51 KSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGEL 110
KS H L +P S K+ + L+ Y+G +Y G +Q E + +TIE L
Sbjct: 50 KSKNKDIHKLQKPFDFSK------CNKRHILLKFYYLGWNYNGFVVQ--ESTDNTIEEHL 101
Query: 111 ETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI---PPDAWKDD--- 164
AL K+ I N + R RTDKGV S + +I + + P D K +
Sbjct: 102 FEALIKSCCIESRETSN-----YHRCGRTDKGVSSFSQVISIDLRSKLNPEDQCKLEDEL 156
Query: 165 PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE 224
PY K +N LP NI+ + P+ +F R C R Y Y P + I+S A +
Sbjct: 157 PY----CKILNRLLPSNIRCIAWCPASSNFSARFNCKFRTYKYFFPRGNLNIDSMDKAVK 212
Query: 225 IDSHISDFNAI 235
DF I
Sbjct: 213 YTIGEHDFRNI 223
>gi|20094324|ref|NP_614171.1| TruD family pseudouridine synthase [Methanopyrus kandleri AV19]
gi|30913397|sp|Q8TWZ3.1|TRUA_METKA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19887376|gb|AAM02101.1| Pseudouridylate synthase of the TruA family [Methanopyrus kandleri
AV19]
Length = 256
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 24/131 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VALRV Y G+ Y G Q Q D + TIEG L AL + G L+ + +A SR
Sbjct: 2 RVALRVAYDGSRYHGFQYQPD---VPTIEGALRKALSELG---------LELVGYA--SR 47
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD G H+ ++ ++ + P+ + DP +NA LP++I+V + FDPRR
Sbjct: 48 TDAGAHARYQVVVVEGD--PELAQPDP--------INARLPKDIRVIAKTEVHEEFDPRR 97
Query: 199 ECNLRKYSYLL 209
+ ++Y Y L
Sbjct: 98 DALRKEYRYFL 108
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 95/225 (42%), Gaps = 54/225 (24%)
Query: 53 SPSVSHTLTRPTPNSSDDKWEPVR----------KKKVALRVGYVGTDYRGLQMQRDEHS 102
SPS + T PT N+ + V+ ++ VALR+ Y+G Y+G +Q E++
Sbjct: 38 SPSSAETNCPPTGNAIKRGKKAVKNRPLDFFAHPRRHVALRLAYLGWAYQGFAVQ--ENT 95
Query: 103 LSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMIC----------- 151
+T+E L AL K I++ N + R RTDKGV + + +I
Sbjct: 96 DNTVEARLFEALHKTCLIQDRQSSN-----YHRCGRTDKGVSAFSQVITIESRSTQFCGG 150
Query: 152 LKMEIPPDAWKDD---------PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNL 202
L +++P + D PY K +N LP +I++++ P+ F R +C
Sbjct: 151 LGVKLPENVDADKKSQTAVSELPY----VKMLNRVLPHDIRIWNWAPAAEGFSARFDCQS 206
Query: 203 RKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R Y Y P + + AAE +EG H F N
Sbjct: 207 RTYRYYFPRGSLNVELMADAAE-------------RYEGTHDFRN 238
>gi|343127336|ref|YP_004777267.1| tRNA pseudouridine synthase A [Borrelia bissettii DN127]
gi|342222024|gb|AEL18202.1| tRNA pseudouridine synthase A [Borrelia bissettii DN127]
Length = 246
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 93/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + STI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---STIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I M+I +L K +NA L + IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDMDINIKLN-------NLKKALNAILLKTGIKILKLKYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + + +++ IS+ N + G H F ++
Sbjct: 103 RFSAQKRKYSYYILNSDNYYPWE--GYQAHHVSKKLN--ISNLNQMAKTLIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIHFAKFKKRGK 181
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 40/194 (20%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++KV L++ Y G Y G +Q D S TIEG L AL + IR N + R
Sbjct: 58 KQRKVLLQICYFGWSYHGFAVQED--SPMTIEGHLFNALSRTCLIRSRETSN-----YHR 110
Query: 136 SSRTDKGVHSLATMICLKM-----EIP-------------PDAWKDDPYGIDLAKRVNAH 177
RTDKGV + ++ +++ E P P+ ++ ID K +N++
Sbjct: 111 CGRTDKGVSAFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTTNEE--IDYCKILNSN 168
Query: 178 LPRNIKVFSILP-SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAIL 236
LP +I+V + P + R F R +C +R+Y Y+ P L AA S I + A
Sbjct: 169 LPPDIQVIAWAPLTNRDFSARFDCKIREYKYIFP---------LGAARDLSRIQEAGA-- 217
Query: 237 NEFEGEHPFHNYTE 250
+ G H F N+ +
Sbjct: 218 -KLLGSHDFRNFCK 230
>gi|388583265|gb|EIM23567.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 434
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 32/208 (15%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
NS D + ++K+A++ Y G Y GL Q L T+E L AL K + +
Sbjct: 8 NSRDFVFNAYSQRKIAIKFSYAGWAYNGLAAQGTPTPLPTVEQTLWDALAKGRLVDSTK- 66
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKM--------------------EIPPDAWKDDP 165
+ + W+R RTDKGV S ++ L + + P D
Sbjct: 67 -SFESAGWSRCGRTDKGVSSAGQVVALWVRSAYTPENKPSSIEAFKGPSQAKPIKLTKDQ 125
Query: 166 YGI---DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
+ + + +N+ LP I++ + P + SFD R +C R Y Y I
Sbjct: 126 QALVEYNFLQILNSLLPPTIRILAWSPVKNSFDARFDCKERHYKYYF-----DIKESPLG 180
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTE 250
+D H+ N L +GEH F N+ +
Sbjct: 181 PGLDIHL--MNGALELIKGEHDFRNFCK 206
>gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Ogataea parapolymorpha
DL-1]
Length = 404
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 29/235 (12%)
Query: 58 HTLTRPTPNSSDDKWEPVR--------KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGE 109
H ++ N S++ P R K+++AL+ Y+G +Y GL Q D ++ T+E
Sbjct: 30 HQISSDCDNVSENAKRPRREFDFSKYNKRRIALKFSYLGWNYHGLAYQNDTSNIPTVELF 89
Query: 110 LETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL--KMEIPPDAWK---DD 164
+ AL K IR + + ++R RTDKGV ++ +I L + + D +D
Sbjct: 90 ILKALEKTKLIRNLDPTDCD---FSRCGRTDKGVSAMNQVISLVVRSNLTQDEMANPLND 146
Query: 165 PYGIDLAKRVNAHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAA 223
+D K +N LP +I++ SI L FD R C R Y Y + I AA
Sbjct: 147 VKELDYVKILNKVLPEDIRIHSICLRPPEGFDARFSCLSRHYKYFFEQANLNIEKMQQAA 206
Query: 224 EIDSHISDFNAILNEFEGEHPFHNY--------TERSKYRRKPHKTGRVSKRAKA 270
DF + +G NY ER+K+ HKT S R A
Sbjct: 207 SYFVGEQDFRNFC-KVDGSKQIVNYKRKIISSSIERTKF---GHKTYVFSLRGSA 257
>gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera]
Length = 400
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 74/177 (41%), Gaps = 30/177 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G DY G +Q E +TIE L AL K+ I N + R
Sbjct: 54 KRHILLKFYYLGWDYNGFVVQ--ESIDNTIEEHLFEALIKSCCIESRETSN-----YHRC 106
Query: 137 SRTDKGVHSLATMICLKMEI---PPDAWKDD---PYGIDLAKRVNAHLPRNIKVFSILPS 190
RTDKGV S + +I L + P D +K + PY K +N LP NI+ + P
Sbjct: 107 GRTDKGVSSFSQVISLDIRSKLNPEDQYKLEDELPY----CKILNRLLPSNIRCIAWCPV 162
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
F R C R Y Y P + I++ N + GEH F N
Sbjct: 163 PNDFSARFNCKFRTYKYFFPRGNLNIDA-------------MNKAVKYIIGEHDFRN 206
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 29/190 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
+++VA ++ Y+G DY GL Q E TIE EL AL K I N ++RS
Sbjct: 8 QRRVAFKLAYIGWDYYGLASQ--EGIEKTIEAELFNALTKTCLIENRTNSN-----YSRS 60
Query: 137 SRTDKGVHSLATMICLKMEI----PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
RTDKGV +L +I L + P + + K +N LP +I++ + P
Sbjct: 61 GRTDKGVSALGQVISLNVRTNLASGPGVIVETVSELSYVKLLNKVLPGDIRILAWAPVDN 120
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER- 251
F R R Y Y P + I + AA+ +GEH F N+ +
Sbjct: 121 DFSARFNTVSRTYKYYFPRANMNIEAMNEAAQ-------------RLKGEHDFRNFCKMD 167
Query: 252 ----SKYRRK 257
S +RR+
Sbjct: 168 LANVSNFRRE 177
>gi|169806638|ref|XP_001828063.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|161779191|gb|EDQ31215.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 347
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 87/211 (41%), Gaps = 52/211 (24%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+A GY G Y G+Q + ++T+E +L L K I E N + QKI +
Sbjct: 2 KRKIAFLWGYCGITYSGIQFNNE---INTLEKKLIDILCKLQYISEKNAESAQKIKMKSA 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK-----VFSILPSQ 191
SRTDKGV ++ + K+ +L + +N L +++I
Sbjct: 59 SRTDKGVSAIFNVTICKI------------NQELTENINQILKNEFSKAGFILYNIARVP 106
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEID---------------SH-------- 228
++F P R R+Y Y +P V +N + ++ID H
Sbjct: 107 KTFIPYRSARSREYKYFIPIGV--LNKNIAKSQIDIMQSSENYNISIEKFKHDTFDWLNK 164
Query: 229 -------ISDFNAILNEFEGEHPFHNYTERS 252
I N ILN F G H FHN+T ++
Sbjct: 165 STSNTQIIDKLNFILNLFHGNHDFHNFTTQN 195
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 24/159 (15%)
Query: 351 YETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKR 410
+ T + + + I++ S K+ G YVE+ + G+SF++HQIRKM+ A+ + R
Sbjct: 191 FTTQNVQGTTIRYIKHIYANSIKKIN---GIEYVEVFLHGDSFIMHQIRKMIAFAIFMCR 247
Query: 411 KLLPRDIL----TLSLAKHSRIVLPLAPSEVLFL---RANSFSVRTRPGVTRPEMQTMVE 463
I+ + +K++ + P APSE L+L + F+ RT P + V+
Sbjct: 248 NYDDNTIIEQYYNIIFSKNNYYI-PKAPSEYLYLYNIHFDDFNKRT------PYEKLSVD 300
Query: 464 SEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLE 502
+ I+ + F S L S W E+I N+E
Sbjct: 301 YDTIVNF-ETFIQSCILTT------QNLSQWIEFIINME 332
>gi|408383137|ref|ZP_11180676.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
gi|407814245|gb|EKF84877.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
Length = 274
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 29/175 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL+V Y+GT + G Q Q + L T+EGEL AL K+G I NL + +++ + R
Sbjct: 3 RVALKVAYLGTAFYGFQRQPN---LRTVEGELLKALEKSGAIT-----NLGQSSYSIAGR 54
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GVH+L ++ + P + +VN LP +I++ P + F R
Sbjct: 55 TDRGVHALGNVVSFCTDKEP-----------IINQVNDVLPMDIRILGSCPVPQGFKTRY 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
R Y Y+L + L + +H+ EG H F N++ R++
Sbjct: 104 AYK-RHYRYVLCRKTGEEEWDLDKMQEAAHL---------MEGTHNFINFSRRNE 148
>gi|340505792|gb|EGR32098.1| tRNA pseudouridine synthase a, putative [Ichthyophthirius
multifiliis]
Length = 318
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 35/162 (21%)
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD---------------------- 163
+L+K W+R +RTDKGVH+L I +K+ + + +D
Sbjct: 2 NDLKKAGWSRGARTDKGVHALINGINVKLAVTKEFLRDPDIEKEHVLENAINTKQQQKNA 61
Query: 164 ----DPYGID-LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA------E 212
+ D + + +N++LP++I++ S+ + FD R C+ R Y Y+LP E
Sbjct: 62 IERKNQINYDKIIQTLNSNLPQDIRIISLKQVTKKFDIRTACSHRIYEYILPLFMLQKFE 121
Query: 213 VIGINSQLTAAEIDSHISD-FNAILNEFEGEHPFHNYTERSK 253
I N ++ +I+ I + N IL +F G +HNYT++ K
Sbjct: 122 DIKENKKV-FLQIEQQIQEKINQILKKFIGTKSYHNYTKQLK 162
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 10/133 (7%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V + G+SF+ HQIRKM+G V +K L D + S K V LAP+ LFL
Sbjct: 187 FVRFTFFGQSFIYHQIRKMIGMICMVFQKQLELDFIDKSFEKEFTKVW-LAPAHGLFLNQ 245
Query: 443 NSFSVRTRPGVTRPEM-QTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
F + R E+ + +V E +K ++E + ++ ++ ++ + +W +N+
Sbjct: 246 MVFDQYNK----RQEIPELIVWDENEIKRIEEMRNIIEYVVMN--VNIVQNLYFQWAKNV 299
Query: 502 EKFTSIPNEQLDE 514
+ I +++DE
Sbjct: 300 NE--GIEIQEIDE 310
>gi|429964914|gb|ELA46912.1| tRNA pseudouridine synthase A [Vavraia culicis 'floridensis']
Length = 405
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 52/218 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K KVA+ V Y GT + GLQ QR + TIE L L + I+ N + +K+ R+
Sbjct: 47 KSKVAILVAYTGTPFHGLQYQRT--GVPTIEQTLINGLVEMNLIKRINSTDPKKMHLQRA 104
Query: 137 SRTDKGVHSLATMICLKME--------------------IPPDAWKDDPYG--------- 167
RTDKGVH+ +I + +E + D D+ G
Sbjct: 105 CRTDKGVHAAFNVIVVNLERGCYDEFIRRFDRLSAGTIGVVNDERNDERNGERNGERNGE 164
Query: 168 -----IDLAK-----RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGIN 217
+D+ K + L +I V+ ++ +SF+P+ + R Y+YL+P ++ ++
Sbjct: 165 RNGDNMDIPKENSISNTSLALAHHIHVYDVVRVPKSFNPKNRTDYRIYNYLVPKHMLKVD 224
Query: 218 SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
+ ++ D ++ G +HN+T S R
Sbjct: 225 KETLSSIFDLYV-----------GTKDYHNFTLVSNKR 251
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 385 EISISGESFMLHQIRKMVGTAVAV------KRKLLPR-DIL--TLSLAKHSRIV-LPLAP 434
EI ISG+SFM+HQIRKM+G + + R P +I+ +LA R++ +P AP
Sbjct: 273 EIKISGQSFMMHQIRKMIGFVLLIVNYHGKDRGTAPALEIVQKIFALAFSPRLLNIPKAP 332
Query: 435 SEVLFLRANSF 445
+ LFL F
Sbjct: 333 AHPLFLDTPVF 343
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA+R Y+G +Y GL Q ++ L T+E ++ AL A ++++ G ++R RT
Sbjct: 54 VAIRFAYLGWNYNGLAFQFEDTPLPTVEEQILKALATAKLVKDAEPGCCD---FSRCGRT 110
Query: 140 DKGVHSLATMICLKM--EIPPDAWK---DDPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ + P+ + +D I +N+ LP +I+V +I L
Sbjct: 111 DKGVSAMNQVISLRVRSDFSPEDQQLQSNDDKEIPYIFILNSILPPDIRVTAISLRPPPK 170
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT---- 249
FD R C R Y YL+ E + ++ AA +++G H F N+
Sbjct: 171 FDARFSCEYRHYRYLIAKEGLDLDLLQAAAA-------------KYKGSHDFRNFCKIDG 217
Query: 250 --ERSKYRRKPHKT 261
+ + YRR+ + +
Sbjct: 218 SKQITNYRREIYHS 231
>gi|260891283|ref|ZP_05902546.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254]
gi|260858959|gb|EEX73459.1| tRNA pseudouridine synthase A [Leptotrichia hofstadii F0254]
Length = 250
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 34/191 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + + Y G+ + G Q Q+ + T++GE+E A+FK Q+I S
Sbjct: 3 KRNLKMIYQYDGSKFCGFQRQK---KMKTVQGEIERAVFKTFN---------QEINMISS 50
Query: 137 SRTDKGVHSLATM--ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGVH++ + + IP +A K +++N L +KV + + + F
Sbjct: 51 GRTDKGVHAMEQVSNFVIDENIPIEAIK---------RQINKCLKGEVKVLEVEEAGKDF 101
Query: 195 DPRRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ R + R Y Y++ P E + +T + F I+N+F G++ F +
Sbjct: 102 NARFDAKSRTYLYIMRNEEDITPFEA----NYVTGLRASVSVEKFQEIMNDFVGKYDFSS 157
Query: 248 YTERSKYRRKP 258
+ ++ K R P
Sbjct: 158 FMKKDKAYRNP 168
>gi|195941752|ref|ZP_03087134.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 80a]
gi|216264809|ref|ZP_03436801.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a]
gi|224533912|ref|ZP_03674497.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a]
gi|215981282|gb|EEC22089.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a]
gi|224512915|gb|EEF83281.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a]
Length = 246
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 93/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK++ + + KR K
Sbjct: 159 CIKDKSKFKFRHIYFAKFKKRGK 181
>gi|19075416|ref|NP_587916.1| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74676082|sp|O74451.2|YCG6_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C16C4.06c
gi|6855456|emb|CAA20745.2| tRNA pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 413
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+ V V Y GT + GLQ + + TI+ L A + G + + N + +KI
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNAN---VKTIQDTLFQAFARVGAVVQVNADSPKKIRMCS 91
Query: 136 SSRTDKGVHSLATMICLK-MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGVH++ ++ LK ++ P P+ ++L VN LP I+V+ + + SF
Sbjct: 92 AARTDKGVHAIVNVLGLKVLDNQP-----LPHVVNL---VNDILPPCIRVWKMARTFNSF 143
Query: 195 DPRRECNLRKYSYLLPA 211
P C+ R Y Y LP
Sbjct: 144 SPHTVCDSRVYEYWLPV 160
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V++ G+SFM HQIRKMVG + + R +L + RI +P AP+E L L
Sbjct: 268 WVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQ 327
Query: 443 NSF 445
F
Sbjct: 328 PIF 330
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 85/206 (41%), Gaps = 32/206 (15%)
Query: 48 SSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIE 107
++ K+ S + + R + D + K+ + L+ Y+G +Y G +Q E +TIE
Sbjct: 44 TNEKNEKSKNKNIIRKSQKPFD--FSKCNKRHILLKFYYLGWNYNGFVVQ--ESINNTIE 99
Query: 108 GELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI---PPDAWKDD 164
L AL K+ I N + R RTDKGV S + +I L + P D +K +
Sbjct: 100 EHLFEALIKSCCIESRETSN-----YHRCGRTDKGVSSFSQVISLDIRSKLNPEDQYKLE 154
Query: 165 ---PYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLT 221
PY K +N LP NI+ + P F R C R Y Y P + I++
Sbjct: 155 DELPY----CKMLNRLLPSNIRCIAWCPVPNDFSARFNCKFRTYKYFFPRGNLNIDAMDK 210
Query: 222 AAEIDSHISDFNAILNEFEGEHPFHN 247
A + GEH F N
Sbjct: 211 AVKY-------------IIGEHDFRN 223
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +ALR Y G +Y GL Q + L T+E E+ AL KA I E + ++R
Sbjct: 69 KRFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEP---DPLVCNFSRC 125
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
RTDKGV ++ +I L++ P K+ PY L N+ LP +I++ I
Sbjct: 126 GRTDKGVSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITIL----NSLLPPSIRITGI 181
Query: 188 -LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
L FD R C+ R Y Y+ + + + AA+ ++EGEH F
Sbjct: 182 CLNPPPGFDARFSCSYRHYRYIFRRYDLDLEAMTEAAK-------------KYEGEHDFR 228
Query: 247 NYTE 250
N+ +
Sbjct: 229 NFCK 232
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G +Y G +Q E + +TIE L AL K+ I N + R
Sbjct: 70 KRHILLKFYYLGWNYNGYVVQ--ESTDNTIEEHLFEALIKSCCIESRETSN-----YHRC 122
Query: 137 SRTDKGVHSLATMICLKMEI---PPDAWKDD---PYGIDLAKRVNAHLPRNIKVFSILPS 190
RTDKGV S + +I + + P D K + PY K +N LP NI+ + P+
Sbjct: 123 GRTDKGVSSFSQVISIDLRSKLNPEDQCKLEDELPY----CKILNRLLPSNIRCIAWCPA 178
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+F R C R Y Y P + I+S A + DF I
Sbjct: 179 SSNFSARFNCKFRTYKYFFPRGNLNIDSMDKAVKYTIGEHDFRNI 223
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +ALR Y G +Y GL Q + L T+E E+ AL KA I E + ++R
Sbjct: 69 KRFIALRFAYAGWNYNGLAFQNEPTPLPTVEQEILEALTKARLITEP---DPLVCNFSRC 125
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
RTDKGV ++ +I L++ P K+ PY L N+ LP +I++ I
Sbjct: 126 GRTDKGVSAMNQVISLEVRSGLTEEQRSQPGADQKEIPYITIL----NSLLPPSIRITGI 181
Query: 188 -LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
L FD R C+ R Y Y+ + + + AA+ ++EGEH F
Sbjct: 182 CLNPPPGFDARFSCSYRHYRYIFRRYDLDLEAMTEAAK-------------KYEGEHDFR 228
Query: 247 NYTE 250
N+ +
Sbjct: 229 NFCK 232
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+AL+V Y+GT+Y G Q Q D + T+EG+L AL AG I + Q +
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPD---VPTVEGKLLEALEGAGIIEDPKRARFQI-----AG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD+GVH+L + E +D + ++N LPR+I+V + F R
Sbjct: 54 RTDRGVHALGNFVSFFTE-------EDIH----VNQINDLLPRDIRVLAWASVMYPFKVR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
R Y Y+L E + AE +H F G H F N++ RS
Sbjct: 103 YPLE-RHYRYILHRE--ESMDTYSMAEAAAH----------FRGTHDFSNFSRRS 144
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 12/157 (7%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
++ K+A + Y+G DY+GL +Q + + TIEG + AL +A ++ + K + R
Sbjct: 101 KQVKIAFKFSYLGKDYKGLAIQTN--TDETIEGRIFAALKRACLVQPD--IPIFKSQYTR 156
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTDKGV +L ++ L + KDD Y + +N LP +I++ S FD
Sbjct: 157 CGRTDKGVSALGNVLSLYVR----KLKDDNY----CQVLNHCLPADIRMISFSEVPAHFD 208
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R C R+Y Y + + I AA I DF
Sbjct: 209 SRFSCIYREYKYFFVQQNMNIEKMKQAARKYLGIHDF 245
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALIKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIP----------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P D D I A +N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADDIAKEIRYAHILNRVLPADIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P++ SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 174 LAWAPAEPSFSARFSCLERTYRYFFP-----------CADLD--IATMNYAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|391333028|ref|XP_003740926.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Metaseiulus
occidentalis]
Length = 457
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 40/204 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ VAL+ Y+G DY+G +Q D TIE + AL++ +R+ N + R
Sbjct: 106 RHVALKFLYLGWDYKGFVVQDDTDR--TIEAVIFEALYRTKLVRDRETSN-----YHRCG 158
Query: 138 RTDKGVHSLATMICLKME----------IPPD--AWKDDPYG--IDLAKRVNAHLPRNIK 183
RTDKGV + + +I L + PPD A + G ID K +N LP I+
Sbjct: 159 RTDKGVSAFSQVITLDLRSNLEDGVGVVTPPDYRAGRTQISGEEIDYVKILNRVLPAEIR 218
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
+ + P R +C +R Y Y P + + S A+ + EGE+
Sbjct: 219 MIAWSPVDPRLSARFDCRMRSYRYFFPRGRLKVESMREASRL-------------LEGEN 265
Query: 244 PFHNYTER------SKYRRKPHKT 261
F N + +++RR+ K
Sbjct: 266 DFRNLCKMDVGNGVTQFRRRVEKC 289
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 41/224 (18%)
Query: 56 VSHTLTRPTPNSSDDKWEPVR-----KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGEL 110
+ H L + +P D P ++++AL+V Y+G +Y G + E ++ T+EGE+
Sbjct: 46 LEHELNQQSPAVKDKSRRPFDISQYGQRRIALKVAYLGWNYCGFAHLK-EKNIPTVEGEI 104
Query: 111 ETALFKAGGI---RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAW------ 161
AL K I E NY +R RTDKGV L +I L +
Sbjct: 105 FKALQKCSLITSPEECNY--------SRGGRTDKGVSGLGQVIALDVRSTQRKLIKEHGD 156
Query: 162 -KDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQL 220
+D PY +N+ LP +I++ + P +F+ R +C R Y Y E I
Sbjct: 157 DRDLPY----INMINSFLPEDIRILAWAPVATTFNARFDCLSRTYKYFFKKEGQDIERMR 212
Query: 221 TAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRV 264
AA + G H F N+ R H T +
Sbjct: 213 EAA-------------SYMIGSHDFRNFCLLDAARNLQHYTREI 243
>gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia]
gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia]
Length = 248
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 42 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIESNLFRALTRTCLIESRATSN---- 95
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 96 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTSLSSEIDYCGLLNRVLPKNIQCV 153
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + S + R +C R Y Y P + I + A ++ +DF
Sbjct: 154 AWMPLRSSVYSARFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADF 201
>gi|392406879|ref|YP_006443487.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
gi|390620015|gb|AFM21162.1| pseudouridylate synthase I [Anaerobaculum mobile DSM 13181]
Length = 261
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL--FKAGGIRESNYGNLQKIAWARS 136
+ A + Y G+ + G Q QR L T++ LE AL G +R + G
Sbjct: 3 RYAALISYDGSAFHGFQRQR---GLPTVQEALEDALSLLNKGMVRVTGAG---------- 49
Query: 137 SRTDKGVHSLATMICLKMEIP--PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD+GVH+L ++ M P PDA L K + A+LP +I VF ++P F
Sbjct: 50 -RTDRGVHALGQVVSFDMFWPHGPDA---------LRKALEANLPSSIGVFEVVPVDEGF 99
Query: 195 DPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
D R+ RKY+Y + + ++ L + A L+ +G H F + +
Sbjct: 100 DARKSALWRKYAYFIWKGDCRLPHLDEHLWRNGKPWDMQKARAFLSMIKGHHDFSAFCRK 159
Query: 252 S 252
+
Sbjct: 160 A 160
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VAL+V Y G + G S IE +E+ +FKA + N ++ ++R
Sbjct: 119 KRLVALKVMYFGQRFYGFS------SEGNIEPTVESEIFKALERAKLMVANRKESCYSRC 172
Query: 137 SRTDKGVHSLATMICLKM-----EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
RTDKGV + +I L + ++ D D+ ID K +N LPR+I+V P
Sbjct: 173 GRTDKGVSATGQVISLYLRSNIKDVGGDML-DERSEIDYVKVLNRILPRDIRVLGWCPVP 231
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
F R C R+Y YL + I AA ++F GEH F N+ +
Sbjct: 232 ADFHARFTCLSREYKYLFWKGDLDILEMQKAA-------------SKFIGEHDFRNFCKM 278
Query: 252 -----SKYRR 256
S YRR
Sbjct: 279 DAANVSNYRR 288
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+AL+ Y G +Y GL Q + +L T+E L+ AL+K I + N G W R
Sbjct: 48 RRKIALKFCYDGWEYNGLASQGEPTALPTVEAVLQEALYKKRLI-DPNAGP-AGCDWDRC 105
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTDKGV + + ++ L + A K+ PY + + RV LP ++++ + P +F
Sbjct: 106 GRTDKGVSAASQVVSLWIRT---AKKEFPY-VSMLNRV---LPPSLRILAWAPVADTFSA 158
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R C R Y Y + I + A + GEH F N
Sbjct: 159 RFNCRYRHYKYFFSPDGIDLARMRAGAAL-------------LLGEHDFRN 196
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 30/181 (16%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q++ L T+EG + A+ K + Q ++R RT
Sbjct: 84 IALKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMSKCKLVPSM---VPQDYNFSRCGRT 140
Query: 140 DKGVHSLATMICLKMEI---------PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LP 189
DKGV ++ +I L + P + K+ PY +N LP +I+V ++ L
Sbjct: 141 DKGVSAMNQVISLSVRSNLTAEEQLDPANDSKEIPY----VHILNQLLPDDIRVSAVCLR 196
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
FD R C R Y YL + + I+ AA++ + GEH F N+
Sbjct: 197 PPEGFDARFSCKYRHYKYLFKKDSLNIDLMQEAAKM-------------YIGEHDFRNFC 243
Query: 250 E 250
+
Sbjct: 244 K 244
>gi|221486308|gb|EEE24569.1| pseudouridylate synthase, putative [Toxoplasma gondii GT1]
Length = 901
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 93 GLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL 152
GL ++ E T+EG LE AL +GGI G LQK+ W+R++RTD+GVH+ ++ L
Sbjct: 270 GLSLESLEAPPRTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSL 329
Query: 153 KMEIPPDAWKDDPYG 167
K+ + P +++ D G
Sbjct: 330 KLSLGPVSFRADESG 344
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL-AKHSRIVLPLAPSEVLFLRA 442
V I + G+SF+ +QIRKMVG AV V R LT +L + + AP+E L L +
Sbjct: 758 VVIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLS 817
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
+ R PE+ VE E I + + F S P ++ T W +WIEN+
Sbjct: 818 PVYDTYNRTRAAPPEL-PAVEVESIQEEILSFQRSAIFPRIAHSFSTTV--WNDWIENI 873
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
R+NA LP +I+ F++ ++FD R C+ R+Y++LLPA
Sbjct: 448 RLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPA 486
>gi|237833615|ref|XP_002366105.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
gi|211963769|gb|EEA98964.1| hypothetical protein TGME49_024200 [Toxoplasma gondii ME49]
Length = 904
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 93 GLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL 152
GL ++ E T+EG LE AL +GGI G LQK+ W+R++RTD+GVH+ ++ L
Sbjct: 270 GLSLESLEAPPRTVEGVLEEALLASGGIAPCCLGCLQKLQWSRAARTDRGVHAACNVVSL 329
Query: 153 KMEIPPDAWKDDPYG 167
K+ + P +++ D G
Sbjct: 330 KLSLGPVSFRADESG 344
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL-AKHSRIVLPLAPSEVLFLRA 442
V I + G+SF+ +QIRKMVG AV V R LT +L + + AP+E L L +
Sbjct: 761 VVIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLS 820
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
+ R PE+ VE E I + + F S P ++ T W +WIEN+
Sbjct: 821 PVYDTYNRTRAAPPEL-PAVEVESIQEEILSFQRSAIFPRIAHSFSTTV--WNDWIENI 876
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
R+NA LP +I+ F++ ++FD R C+ R+Y++LLPA
Sbjct: 451 RLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPA 489
>gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium
castaneum]
Length = 275
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 32/195 (16%)
Query: 59 TLTRPTPNSSDDK---WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF 115
T T+P K ++ + + V L+ Y+G DY+G Q D +++TIE + AL
Sbjct: 34 TATKPANQPKCQKPFDFQNCKFRHVLLKFLYLGWDYQGYVTQED--TVNTIEHHVFNALI 91
Query: 116 KAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVN 175
K I + N + R RTDKGV I L + D ++ + I+ K +N
Sbjct: 92 KTCLIENRSSAN-----YHRCGRTDKGV------ISLDLRSNGDDFESE---INYCKILN 137
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
LP NI+ + P + +F R +C R Y Y P + I++ AA
Sbjct: 138 RVLPENIQFVAWCPVESAFSARFDCKNRTYKYFFPKSNLDIDAMKIAA------------ 185
Query: 236 LNEFEGEHPFHNYTE 250
N G H F N+ +
Sbjct: 186 -NYLVGTHDFRNFCK 199
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 83/190 (43%), Gaps = 30/190 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VAL+V Y G + G S IE +E+ +FKA + N ++ ++R
Sbjct: 148 KRLVALKVMYFGQRFYGFS------SEGNIEPTVESEIFKALERAKLMVANRKESCYSRC 201
Query: 137 SRTDKGVHSLATMICLKM-----EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
RTDKGV + +I L + ++ D D+ ID K +N LPR+I+V P
Sbjct: 202 GRTDKGVSATGQVISLYLRSNIKDVGGDML-DERSEIDYVKVLNRILPRDIRVLGWCPVP 260
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
F R C R+Y YL + D I + ++F GEH F N+ +
Sbjct: 261 ADFHARFTCLSREYKYLF-------------WKGDLDILEMQKAASKFIGEHDFRNFCKM 307
Query: 252 -----SKYRR 256
S YRR
Sbjct: 308 DAANVSNYRR 317
>gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia]
gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia]
Length = 498
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 93 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIESNLFRALTRTCLIESRATSN---- 146
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 147 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTSLSSEIDYCGLLNRVLPKNIQCV 204
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + S + R +C R Y Y P + I + A ++ +DF
Sbjct: 205 AWMPLRSSVYSARFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADF 252
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 12/195 (6%)
Query: 60 LTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGG 119
L++ P D + K+ +ALR YVG DY GL Q + L T+E E+ AL K+
Sbjct: 68 LSKNKPKEFD--FSKYNKRFIALRFAYVGWDYNGLNFQYEPTPLPTVEEEILKALAKSKL 125
Query: 120 IRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME---IPPDAW--KDDPYGIDLAKRV 174
I + + ++R RTDKGV ++ +I L + IP D +D + +
Sbjct: 126 ITQVDPACCN---FSRCGRTDKGVSAMNQVISLDVRSNLIPEDQLSSSNDDKELPYLAIL 182
Query: 175 NAHLPRNIKVFSI-LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
N+ LP +I++ ++ L FD R C+ R Y Y+ + ++ A+ + DF
Sbjct: 183 NSLLPTDIRITAVCLRPPPKFDARFSCSYRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFR 242
Query: 234 AILNEFEGEHPFHNY 248
+ +G NY
Sbjct: 243 NFC-KIDGSKQITNY 256
>gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1
[Acyrthosiphon pisum]
gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2
[Acyrthosiphon pisum]
Length = 402
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ V ++ Y+G DY G Q + S TIE EL AL I N + R
Sbjct: 56 KRHVVFKILYLGWDYHGFATQ--DVSEKTIEYELFRALTICCLIESRQTSN-----YHRC 108
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTDKGV S + +I L + D ++ PY K +N LP++I+V + P + F
Sbjct: 109 GRTDKGVSSFSQVISLTVRSNGDDSEELPY----CKMLNRLLPKDIRVVAWGPVKDDFSA 164
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R +C R Y Y P D + N + + G H F N
Sbjct: 165 RFDCGSRTYKYWFPRG-------------DLDVDLMNQAIQQVVGTHDFRN 202
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 30/184 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +T+E +L AL K + N + R
Sbjct: 62 RRHVALRIAYLGWGYQGFASQ--ENTSNTVEEQLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY--GIDLAKRV------NAHLPRNIKVFS 186
RTD+GV + +I L + ++P +D + G D A+ + N LP +I+V +
Sbjct: 115 GRTDRGVSAFGQVISLDLRSQLPRGRGSEDVHVEGTDTAQEIRYTHILNRVLPPDIRVLA 174
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
P + F R C R Y Y P A++D + N+ ++ G H F
Sbjct: 175 WAPVEPGFSARFSCLERTYRYFFP-----------RADLD--VESMNSAAQKYVGTHDFR 221
Query: 247 NYTE 250
N+ +
Sbjct: 222 NFCK 225
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGE----LETALFKAGGIRESNYGNLQK 130
+K+ VAL++ Y G + G + H+ T+E E LE A G +ES Y
Sbjct: 111 CQKRLVALKIMYFGQRFYGFA--SEAHTEPTVESEIFKVLERARLLVGSRKESCY----- 163
Query: 131 IAWARSSRTDKGVHSLATMICL----KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+R RTDKGV + +I L ++ P D+ ID K +N LPR+I+V
Sbjct: 164 ---SRCGRTDKGVSATGQVISLYLRSNLKDPGGNVLDERSEIDYVKVLNRMLPRDIRVIG 220
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
P F R C R+Y YL + + AA ++F GEH F
Sbjct: 221 WCPVAADFLARFSCLGREYKYLFWKGGLDVPKMQKAA-------------SKFIGEHDFR 267
Query: 247 NYTER-----SKYRR 256
N+ + S YRR
Sbjct: 268 NFCKMDAANVSNYRR 282
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA + Y+G +Y GL +Q++ L T+EG + A+ A + S Q ++R RT
Sbjct: 89 VAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAM-NACKLVPSMVP--QDYNFSRCGRT 145
Query: 140 DKGVHSLATMICLKM--EIPPDAWKD---DPYGIDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L + + + +D D ID +N LP +I++ ++ L +
Sbjct: 146 DKGVSAMNQVISLHVRSNLTREEQQDEENDGREIDYIHILNQLLPDDIRISAVCLRPPTN 205
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y YL + + I AA + +EGEH F N+ +
Sbjct: 206 FDARFSCQYRHYRYLFHKDGLDIKKMEEAARM-------------YEGEHDFRNFCK 249
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 37/191 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+A + Y+G ++ GL Q D + +T+E L AL K I + + ++R
Sbjct: 41 KRKIAFQFYYLGWEHDGLVQQLD--TANTVEKHLMDALLKTKMIE-----SWENCEFSRC 93
Query: 137 SRTDKGVHSL--ATMICLKMEIPPDA---------------WKDDPYGIDLAKRVNAHLP 179
RTDKGV + + ++ P D +K P + K +N LP
Sbjct: 94 GRTDKGVSAFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLP 153
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEF 239
+ I+VF+ P +R F+ R +CN R Y Y + + AA +
Sbjct: 154 KTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASL-------------L 200
Query: 240 EGEHPFHNYTE 250
GEH + N+ +
Sbjct: 201 IGEHDYINFCQ 211
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 37/191 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+A + Y+G ++ GL Q D + +T+E L AL K I + + ++R
Sbjct: 41 KRKIAFQFYYLGWEHDGLVQQLD--TANTVEKHLMDALLKTKMIE-----SWENCEFSRC 93
Query: 137 SRTDKGVHSL--ATMICLKMEIPPDA---------------WKDDPYGIDLAKRVNAHLP 179
RTDKGV + + ++ P D +K P + K +N LP
Sbjct: 94 GRTDKGVSAFKQTAAVVVRSTCPQDPDVFWDESTPEDVKNNYKSKPEELPYVKMLNGLLP 153
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEF 239
+ I+VF+ P +R F+ R +CN R Y Y + + AA +
Sbjct: 154 KTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASL-------------L 200
Query: 240 EGEHPFHNYTE 250
GEH + N+ +
Sbjct: 201 IGEHDYINFCQ 211
>gi|255540533|ref|XP_002511331.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223550446|gb|EEF51933.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 178
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
++ DK + +++K+A+ Y G Y+G+Q TIEGELE ALF + E + G
Sbjct: 20 TATDKKQRYKRRKIAIFFAYCGVGYQGMQ---KNPGTKTIEGELEEALFHFDAVPEQDRG 76
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
++ WA RTDKGV ++ +I + I DP G L R+N+ LP +I++F
Sbjct: 77 CPKRYDWA---RTDKGVSAVGQVISGRFHI-------DPPG--LVGRLNSILPSHIRIFG 124
>gi|357626173|gb|EHJ76355.1| hypothetical protein KGM_22659 [Danaus plexippus]
Length = 290
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+ D +E +++KK+A+ +GY G DY G MQR+ + TIE +L AL++A I E ++
Sbjct: 65 TCDKPFERIKRKKMAMLLGYCGVDYYG--MQRNP-GVPTIEEDLLKALYEAKYITEDDFN 121
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIP 157
N Q + RSSRTDKGV + ++ +P
Sbjct: 122 NQQNAQFQRSSRTDKGVSAARQVVTYSYTLP 152
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
+ E+ + G+SFMLHQIRKM+G +AV R L S K ++++P AP L L
Sbjct: 226 FAELLVKGQSFMLHQIRKMIGLMIAVVRGHTDISTLEKSFGKE-KVMIPTAPGLGLVL 282
>gi|118349886|ref|XP_001008224.1| tRNA pseudouridine synthase family protein [Tetrahymena
thermophila]
gi|89289991|gb|EAR87979.1| tRNA pseudouridine synthase family protein [Tetrahymena thermophila
SB210]
Length = 484
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K KVA+ GY G Y G Q Q+D+ ++ TIE L L + I E++ G L+K W R
Sbjct: 10 KIKVAIFFGYNGKGYHGSQSQKDQ-NIKTIEKSLFEGLIDSKLISETHMGELKKAGWGRG 68
Query: 137 SRTDKGVHSLATMICLKMEI 156
+RTDKGVH+L + +K+ I
Sbjct: 69 ARTDKGVHALCNGVNVKLAI 88
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 168 IDLAKRVNA---HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA------EVIGINS 218
ID+ K +NA +LP +I+ SI R FD R C R Y YL+P + I +
Sbjct: 232 IDIDKIINALNSNLPADIRCVSIKQVSRKFDIRTHCKYRVYEYLMPLFMYQKYDDIIAGT 291
Query: 219 QLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
+T + + + ++F+G H +HNYT + K
Sbjct: 292 PMTEEFEQKTMQRVSTLADKFKGTHNYHNYTRQMK 326
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ ++ G+SF+ HQIRKM+G + ++ P + + S H+ + + LAP+ LF
Sbjct: 350 GMKFIRFTLVGQSFVYHQIRKMMGMICMMIQEDYPDNFMDSSFF-HNVMRIWLAPAHGLF 408
Query: 440 LRANSF-SVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWI 498
L F S +P + P +E + + +M D +V E + + +WI
Sbjct: 409 LNRMRFDSYNKKPEIPEPIEFDKIEEDRLREMRDIIEKAVMNEE------DVNAIYKQWI 462
Query: 499 ENLEKFTSIPNE 510
++++ + E
Sbjct: 463 KDVKAGNELAEE 474
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ +AL+V Y+G YRG Q E + T+E L AL K + + + ++AR
Sbjct: 454 RAIALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKTRLV-AAAADVFKTASYARCG 512
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD+GV L ++ L ++ + D +D +N LP +++ P + R
Sbjct: 513 RTDRGVSGLGQIVTL--QVRSNGASDPREELDYVGLLNRALPSDVRALGWAPVDEELNAR 570
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+C R+Y Y + TA ++++ FEG H F N+
Sbjct: 571 FDCKWRQYKYFF--------EKTTALDLEA----MGEAARAFEGVHDFRNF 609
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 49/214 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ +AL V Y+G D G Q + S +T+E ++ AL + I+ +L+ ++R
Sbjct: 36 RRHIALMVAYLGWDLDGFCAQNN--SQNTVESKIFKALIETKLIQ-----SLETANYSRC 88
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAW----------KDDPYG--IDLAKRVN 175
RTDK V + + ++ L + PD + K P +D AK +N
Sbjct: 89 GRTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILN 148
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+ LP+ I+V + P +R+F+ R C R+Y Y P +N +++ H S A+
Sbjct: 149 SVLPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKG--ALNLKVSTVVDFLHFSAIVAL 206
Query: 236 LNEFE-------------------GEHPFHNYTE 250
+ F GEH F N+ +
Sbjct: 207 FSNFRRGTICVYFQLMEQASKRLIGEHDFRNFCK 240
>gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio]
Length = 386
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 34/185 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ Q + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQ--ENTDNTVEARLFEALLKTKLIQDR-----QTSCYHRC 109
Query: 137 SRTDKGVHSLATMICLKME-----------IPPDA---WKDDPYGIDLAKRVNAHLPRNI 182
RTDKGV + + +I + + +P D K + K +N LP++I
Sbjct: 110 GRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPQDI 169
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
++ P + F R +C R Y Y P + + AA+ +EG
Sbjct: 170 RILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAK-------------RYEGT 216
Query: 243 HPFHN 247
H F N
Sbjct: 217 HDFRN 221
>gi|386853422|ref|YP_006202707.1| TRNA pseudouridine synthase A [Borrelia garinii BgVir]
gi|365193456|gb|AEW68354.1| TruA [Borrelia garinii BgVir]
Length = 246
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 36/191 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSMYHGFQIQSTK---PTIQGEIEKALMKI---------NKKKVKIYSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNAILLKNSIKILKLKYMKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 -----ERSKYR 255
+SK+R
Sbjct: 159 CIKDKSKSKFR 169
>gi|221508095|gb|EEE33682.1| pseudouridylate synthase, putative [Toxoplasma gondii VEG]
Length = 904
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 93 GLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL 152
GL ++ E T+EG LE AL +GGI G LQK+ W+R++RTD+GVH+ ++ L
Sbjct: 270 GLSLESLEAPPRTVEGVLEEALLASGGIAPYCLGCLQKLQWSRAARTDRGVHAACNVVSL 329
Query: 153 KMEIPPDAWKDDPYG 167
K+ + P +++ D G
Sbjct: 330 KLSLGPVSFRADESG 344
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSR-IVLPLAPSEVLFLRA 442
V I + G+SF+ +QIRKMVG AV V R LT +L + + + + AP+E L L +
Sbjct: 761 VVIELEGQSFLFNQIRKMVGIAVEVCRGTATVTSLTDALRPNRQNVFIHTAPAEGLLLLS 820
Query: 443 NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENL 501
+ R PE+ VE E I + + F S P ++ T W +WIEN+
Sbjct: 821 PVYDTYNRTRAAPPEL-PAVEVESIQEEILSFQRSAIFPRIAHSFSTTV--WNDWIENI 876
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 173 RVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
R+NA LP +I+ F++ ++FD R C+ R+Y++LLPA
Sbjct: 451 RLNAALPPDIRCFAVRRVTKNFDARVSCSRRRYAFLLPA 489
>gi|71985046|ref|NP_496062.3| Protein TAG-124 [Caenorhabditis elegans]
gi|1353139|sp|Q09524.1|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3875428|emb|CAA87378.1| Protein TAG-124 [Caenorhabditis elegans]
Length = 402
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 47/196 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y+G ++ GL Q H+ +T+E + AL K I + K ++R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQ--PHTQNTVENHIMQALIKTHLIED-----WTKCDFSRC 81
Query: 137 SRTDKGVHSL---ATMICLKMEIPPDA---WKDD----------------PYGIDLAKRV 174
RTDKGV + A M+ + P D+ W D PY K +
Sbjct: 82 GRTDKGVSAFKQTAAMVVRSL-CPGDSGVFWSDSTQEHQKVDYKASGEELPY----VKML 136
Query: 175 NAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA 234
N LP+ I+VF+ P ++F+ R +CN R Y Y + + AE+
Sbjct: 137 NGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAEL--------- 187
Query: 235 ILNEFEGEHPFHNYTE 250
GEH F N+ +
Sbjct: 188 ----LVGEHDFSNFCQ 199
>gi|365760937|gb|EHN02619.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ+ ++R RT
Sbjct: 93 IALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSL---VLQEYKFSRCGRT 149
Query: 140 DKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
DKGV ++ +I LK+ ++ P +D I + +N LP +I++ ++ L
Sbjct: 150 DKGVSAMNQVISLKVRSNLTNEEQLDP---ANDCREISYVRVLNQLLPDDIRISAVCLRP 206
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I+ AA F GE+ F N+ +
Sbjct: 207 PPDFDARFSCVHRHYKYVFNGKNLNIDKMSKAASY-------------FLGENDFRNFCK 253
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 30/191 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VAL+V Y G + G S E +E+ +FKA + G+ ++ ++R
Sbjct: 121 KRLVALKVMYFGQRFYGFS------SEGNTEPTVESEIFKALERAKLMVGSRKESCYSRC 174
Query: 137 SRTDKGVHSLATMICLKM-----EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
RTDKGV + +I L + ++ D D+ ID K +N LPR+I+V P
Sbjct: 175 GRTDKGVSATGQVISLYLRSNIKDVGGDML-DERSEIDYVKVLNRILPRDIRVLGWCPVP 233
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
F R C R+Y YL + I AA ++F GEH F N+ +
Sbjct: 234 ADFHARFTCLSREYKYLFWKGDLDILEMQKAA-------------SKFIGEHDFRNFCKM 280
Query: 252 -----SKYRRK 257
S YRR+
Sbjct: 281 DAANVSNYRRR 291
>gi|15594358|ref|NP_212146.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31]
gi|3915171|sp|P70830.2|TRUA_BORBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2687883|gb|AAC66394.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31]
Length = 246
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 44/223 (19%)
Query: 45 PASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLS 104
P+ S+ +P+ + + R + ++ VALR+ Y+G Y+G +Q E++
Sbjct: 38 PSPCESQCTPNDNVSTRRKKAGKRPLDFSAHPRRHVALRLAYLGWSYQGFAVQ--ENTGH 95
Query: 105 TIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI---------C--LK 153
T+E L AL K I++ N + R RTDKGV + + +I C L
Sbjct: 96 TVEARLFEALQKTCLIQDRQTSN-----YHRCGRTDKGVSAFSQVITIDLRSTQFCGGLG 150
Query: 154 MEIPPD---------AWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRK 204
+ +P A + PY K +N LP++I++ P++ F R +C R
Sbjct: 151 VRLPETVDAGAKTKAAVSELPY----VKMLNRVLPQDIRILDWAPAEEGFSARFDCQSRT 206
Query: 205 YSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
Y Y P + + AA+ +EG+H F N
Sbjct: 207 YRYYFPRGALNLELMADAAK-------------RYEGKHDFRN 236
>gi|448304472|ref|ZP_21494410.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
gi|445590905|gb|ELY45117.1| tRNA pseudouridine synthase A [Natronorubrum sulfidifaciens JCM
14089]
Length = 318
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 37/232 (15%)
Query: 65 PNSSD--DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
PN++ D EP+R A R+ Y GT Y G Q Q D ++T+E +F A E
Sbjct: 25 PNTAALVDGTEPMR----AFRIAYDGTGYYGFQRQPD---VATVE----DTIFDALRSLE 73
Query: 123 SNYGNLQKIA-WARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN 181
+ K A +A + RTD GV +LA I L E P W + +NA LP
Sbjct: 74 VLAPDADKPAGYAAAGRTDAGVSALAQTITL--EGP--EWL-------TPRALNAELPAA 122
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD--FNAILNEF 239
++ ++ SF + R Y+Y L A +S T +D I D F+A
Sbjct: 123 VRAWAFADVDDSFHATHDATRRTYTYHLYAPPGAADSSTTPGGVDRAIDDDRFHAACEAL 182
Query: 240 EGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSK 291
G H FHN T H T R S A++D + V + G GF++
Sbjct: 183 SGSHDFHNLTPDD------HNTER-SPTLSATRDGEYLVVTVTAG---GFAR 224
>gi|303389002|ref|XP_003072734.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
gi|303301876|gb|ADM11374.1| pseudouridine synthase 2 [Encephalitozoon intestinalis ATCC 50506]
Length = 345
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 88/208 (42%), Gaps = 47/208 (22%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K + L VGY G+ Y GLQ ++ L T+E E+ L + I + N + +K+ S
Sbjct: 2 KVRAGLLVGYDGSKYHGLQFNKE---LDTVEKEIIGCLLEMEVISQRNADDPKKVHIKSS 58
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRS 193
SRTDKGVH+ ++ +K+E I P+ L + L R I ++ I+ +S
Sbjct: 59 SRTDKGVHAALNLVSVKIEADITPE----------LISGLRTLLSRKEIHLYDIIRLTKS 108
Query: 194 FDPRRECNLRKYSYLLPAEVIG-------------------------------INSQLTA 222
P ++ R Y Y++P + I+S +
Sbjct: 109 TIPSKQAVFRAYEYIVPTFFLAKGDFDKEVEVLRQKDGECRDGRVTRDYPSDMIDSLVGY 168
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ + F AIL ++ G FHN+T+
Sbjct: 169 TSSEDDLRVFEAILQKYTGTKDFHNFTK 196
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDIL----TLSLAKHSRIVLPLAPS 435
G YV +SI+G+SF+LHQIRKM+ + + R RD + + +K + I +P PS
Sbjct: 220 GIEYVRVSITGQSFLLHQIRKMMLFGILLCR--YSRDSVESKFDMVFSKEN-IHVPKGPS 276
Query: 436 EVLFLRANSFSVRTRPG 452
E L L +F R R G
Sbjct: 277 EYLLLDKPTFH-RLRRG 292
>gi|67608685|ref|XP_666896.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657966|gb|EAL36665.1| hypothetical protein Chro.80065 [Cryptosporidium hominis]
Length = 501
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 73 EPVRKKKVALRVGYVGTDYRGLQMQ----RDEHSLSTIEGELETALFKAGGIRESNYGN- 127
E + + + GY G+DY G+Q+Q + L TIEGE+E L K G SN N
Sbjct: 3 EVIPMRTYCMSFGYDGSDYHGMQIQMRNNKKVEELRTIEGEMEDCLEKLGMFFVSNEQND 62
Query: 128 -----LQKIAWARSSRTDKGVHSLATMICLKMEIPPDA 160
L+KI W+R RTDKGVHS+ ++ + +I +
Sbjct: 63 DQGGLLKKIKWSRVGRTDKGVHSVCQVVSFRAKIKING 100
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 384 VEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFL 440
++I I G+SF+LHQIRKMV A+ + R P + + L + + LAPS+ L L
Sbjct: 384 IKIIIKGQSFLLHQIRKMVALAIEIFRGTAPSNGIQLCFLP-DKFSIHLAPSQGLLL 439
>gi|300175270|emb|CBK20581.2| unnamed protein product [Blastocystis hominis]
Length = 310
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 7/168 (4%)
Query: 91 YRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI 150
Y G+Q+ S +E +L LF I N K W R SRTDKGV + + ++
Sbjct: 12 YSGMQVNDTRQS---VEDKLVDCLFMLDKIEPWNVIKSSKFDWERCSRTDKGVSARSIVV 68
Query: 151 CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
K+ D + +++N LP +I+VFS +SF+P + R YSY LP
Sbjct: 69 SGKLMDYDDEFDSSMQNQLAVEQLNQLLPEDIRVFSYTRVSKSFNPHLNTHTRTYSYYLP 128
Query: 211 AEVIGINSQLTA--AEIDSHI--SDFNAILNEFEGEHPFHNYTERSKY 254
+ + + E+ HI + F L+ F G H NY+ +Y
Sbjct: 129 LDQYQSSHYAPSRIIELGVHIDTAKFQKALSVFLGTHSMKNYSGSIQY 176
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ Q + R
Sbjct: 57 RRHVALRLAYLGWQYQGFAVQ--ENTDNTVEARLFEALLKTKLIQDR-----QTSCYHRC 109
Query: 137 SRTDKGVHSLATMICLKME-----------IPPDA---WKDDPYGIDLAKRVNAHLPRNI 182
RTDKGV + + +I + + +P D K + K +N LP +I
Sbjct: 110 GRTDKGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDI 169
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
++ P + F R +C R Y Y P + + AA+ +EG
Sbjct: 170 RILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAK-------------RYEGT 216
Query: 243 HPFHN 247
H F N
Sbjct: 217 HDFRN 221
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
VA R Y+G +Y GL Q + L T+E E+ A+ KA + E++ + ++R RT
Sbjct: 86 VAFRFAYMGWNYNGLNFQNEPTPLPTVEEEILQAMTKAKLVPEADPASCN---FSRCGRT 142
Query: 140 DKGVHSLATMICLKM------EIPPDAWKDD---PYGIDLAKRVNAHLPRNIKVFSI-LP 189
DKGV +L +I L + E D KD PY L NA LP +I++ ++ L
Sbjct: 143 DKGVSALNQVISLDVRSALSKEEHADKEKDVKELPYLTIL----NALLPPDIRITAVCLR 198
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+F+ R C R Y YL + ++ AA ++EG H F N+
Sbjct: 199 PPPNFNARFSCKYRHYKYLFKKTDLDVDLMQEAAL-------------KYEGPHDFRNFC 245
Query: 250 E 250
+
Sbjct: 246 K 246
>gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 276
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL++ Y+GT+Y G Q+Q D + TIE EL L + I + + S R
Sbjct: 2 RIALKIAYIGTEYHGYQIQPD---VPTIEKELFRTLEELKIITDPKSAR-----YIGSGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GV++L ++ + P A + + +N+ LP +I V+S FDPRR
Sbjct: 54 TDAGVNALGQVVAFNTDNPKLA---------IPRVINSKLPPSIWVWSRAEVPDDFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R+Y Y + E + I+ A+++ DF
Sbjct: 105 HAVSREYKYFVCGECLNISLLRKASKLLRGTHDF 138
>gi|218249502|ref|YP_002374546.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7]
gi|224532546|ref|ZP_03673169.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23]
gi|226322073|ref|ZP_03797598.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26]
gi|226708642|sp|B7J0V1.1|TRUA_BORBZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|1665842|emb|CAA70351.1| pseudouridylate synthase I [Borrelia burgdorferi]
gi|2911585|emb|CAA11967.1| pseudouridylate synthase I [Borrelia burgdorferi]
gi|218164690|gb|ACK74751.1| tRNA pseudouridine synthase A [Borrelia burgdorferi ZS7]
gi|224512489|gb|EEF82867.1| tRNA pseudouridine synthase A [Borrelia burgdorferi WI91-23]
gi|226232663|gb|EEH31417.1| tRNA pseudouridine synthase A [Borrelia burgdorferi Bol26]
Length = 246
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 36/187 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ N + R
Sbjct: 70 RRHVALRLAYLGWSYQGFAVQ--ENTDNTVEARLFEALLKTRLIQDRQSSN-----YHRC 122
Query: 137 SRTDKGVHSLATMICLKME-----------IPPDA---WKDDPYGIDL--AKRVNAHLPR 180
RTDKGV + + +I + + +P + K+ G +L K +N LP+
Sbjct: 123 GRTDKGVSAFSQVITIDLRSTQFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVLPQ 182
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
+I++ P+ F R +C R Y Y P + + AA+ +E
Sbjct: 183 DIRILDWAPAAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAK-------------RYE 229
Query: 241 GEHPFHN 247
G H F N
Sbjct: 230 GTHDFRN 236
>gi|221217465|ref|ZP_03588936.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a]
gi|223889178|ref|ZP_03623767.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b]
gi|225549711|ref|ZP_03770676.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a]
gi|226321158|ref|ZP_03796699.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805]
gi|221192743|gb|EEE18959.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a]
gi|223885427|gb|EEF56528.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b]
gi|225369671|gb|EEG99119.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a]
gi|226233450|gb|EEH32190.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805]
Length = 246
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|401840675|gb|EJT43400.1| DEG1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 441
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 24/178 (13%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ+ ++R RT
Sbjct: 93 IALRFAYLGWNYNGLAIQKEYTPLPTVEGIILEAMNKCKLVPSL---VLQEYKFSRCGRT 149
Query: 140 DKGVHSLATMICLKM------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPSQR 192
DKGV ++ +I LK+ E D+ +D I + +N LP +I++ ++ L
Sbjct: 150 DKGVSAMNQVISLKVRSNLTNEEQLDS-ANDCREISYVRVLNQLLPDDIRISAVCLRPPP 208
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I+ AA F GE+ F N+ +
Sbjct: 209 DFDARFSCVHRHYKYVFNGKNLNIDKMSKAASY-------------FLGENDFRNFCK 253
>gi|452825099|gb|EME32098.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 433
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 32/213 (15%)
Query: 52 SSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELE 111
SS SVS +L T D + K+K+ALR+ Y+G + G Q HS +T+E L
Sbjct: 42 SSNSVSASLCCATTGKPFD-FNKHGKRKIALRICYLGWRFDGFASQ--PHSDNTVEEHLF 98
Query: 112 TALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME---IPPDAWKDDPYGI 168
AL K I N + ++R++RTDKGV ++ ++ L + IPP + +
Sbjct: 99 RALLKTKLIE-----NREGSCYSRAARTDKGVSAIENVVSLTVRSHIIPPS---NGEVEL 150
Query: 169 DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSH 228
D + +N LP I + F R + R Y Y E + +++ AA+
Sbjct: 151 DYPRILNGVLPSGIWITGWTSVDPDFHARFSASYRVYHYYFRPEHLNLSAMQRAAQF--- 207
Query: 229 ISDFNAILNEFEGEHPFHNY-----TERSKYRR 256
F GEH F N+ T+ +RR
Sbjct: 208 ----------FVGEHDFRNFCKADVTQVQSFRR 230
>gi|219684777|ref|ZP_03539719.1| tRNA pseudouridine synthase A [Borrelia garinii PBr]
gi|219671722|gb|EED28777.1| tRNA pseudouridine synthase A [Borrelia garinii PBr]
Length = 246
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNAILLKNGIKILKLKYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|387826938|ref|YP_005806220.1| tRNA pseudouridine synthase A [Borrelia burgdorferi N40]
gi|312149333|gb|ADQ29404.1| tRNA pseudouridine synthase A [Borrelia burgdorferi N40]
Length = 246
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex]
Length = 429
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 73/183 (39%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ V L+V YVG DY G +Q EH+ TIE E+ AL K + N + R
Sbjct: 66 KRHVLLQVAYVGWDYAGFVVQ--EHTEKTIEAEVFKALEKTRLLESRETSN-----YHRC 118
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAWK---DDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV S I + + PD + + ID +N LP I++
Sbjct: 119 GRTDKGVSSFGQAISIDLRSNLSEGKGVFIPDGHQAKVGNTVEIDYVGILNKVLPPEIRM 178
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P +S R +C R Y Y P + I A++ GEH
Sbjct: 179 IAWAPINQSLSARFDCRQRTYHYYFPKANLNIERMRVASQ-------------SLIGEHD 225
Query: 245 FHN 247
F N
Sbjct: 226 FRN 228
>gi|225549204|ref|ZP_03770177.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a]
gi|387825673|ref|YP_005805126.1| tRNA pseudouridine synthase A [Borrelia burgdorferi JD1]
gi|225370062|gb|EEG99502.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 94a]
gi|312148421|gb|ADQ31080.1| tRNA pseudouridine synthase A [Borrelia burgdorferi JD1]
Length = 246
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYIKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis]
gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis]
Length = 500
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 56 VSHTLTRPTPNSSDDK----WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELE 111
VS T+ + P + D + W ++ V +++ Y G DY+G Q D S TIEG L
Sbjct: 76 VSETV-KDVPKNKDKQRKFNWASAHQRHVLMKITYFGWDYQGFACQED--SADTIEGYLF 132
Query: 112 TALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--------EIPPDAWKD 163
AL + I N + R RTDK V + +I + + ++ P++
Sbjct: 133 RALERTCLIESRATSN-----YHRCGRTDKEVSAFCQVISINLRSKHSPDTQMKPESLNT 187
Query: 164 DPYGIDLAKRVNAHLPRNIKVFSILPSQR-SFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
+ ID +N LP+NI+ S +P + + R +C R Y Y P + I+S A
Sbjct: 188 E---IDYCSLLNRVLPKNIQCVSWMPLRNPDYSARFDCISRTYRYYFPKGDLDIDSMQQA 244
Query: 223 AEIDSHISDF 232
++ DF
Sbjct: 245 CQLLVCHGDF 254
>gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
Length = 290
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 100/229 (43%), Gaps = 41/229 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ AL++ Y+GT + G Q Q D + T+E EL L K I +L+ + +
Sbjct: 2 KRTALKIAYIGTHFHGFQRQPD---VRTVEEELIYHLRKLEYI-----DDLKASRFRIAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVHSL +I + E ++N LP +I++ + P + F PR
Sbjct: 54 RTDAGVHSLGNVISFQSEKEVR-----------VNQINNSLPDDIQIIAWAPVRFGFKPR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRK 257
R Y Y+L E + I+ AE+ F+G H F N+T +RK
Sbjct: 103 F-AKRRWYRYILFEEDLDIDLLRKTAEV-------------FKGTHDFTNFT-----KRK 143
Query: 258 PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGE 306
T R + + +K + EE + ++ F+ + +S + I GE
Sbjct: 144 QKTTVRTIEDIRITKPII---DEEDKNKKSDFAHLNKSYSPIFVDIYGE 189
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 11/159 (6%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VALR+ Y+G Y+G Q E++ +T+E + AL K + N + R
Sbjct: 61 KQHVALRLAYLGWGYQGFASQ--ENTKNTVEETVFNALIKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD+GV +L +I L + + + Y + + RV LP +I+V S SF
Sbjct: 114 GRTDRGVSALGQVISLDLRCSGEGKPEIRY-VHILNRV---LPPDIRVLSWAAVPPSFSA 169
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
R C R Y YL P + + + AA + DF +
Sbjct: 170 RFSCRSRTYRYLFPCAQLDVEAMDKAARLLEGTHDFRNL 208
>gi|448454793|ref|ZP_21594273.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
gi|445814476|gb|EMA64438.1| tRNA pseudouridine synthase A [Halorubrum lipolyticum DSM 21995]
Length = 292
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 20/171 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H+ +T+EG L AL + G + R + +A + RT
Sbjct: 11 AFRVAYDGREYAGFQRQ--PHA-TTVEGTLLRALAEHGILDRGDGPTHATPPGYAAAGRT 67
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + PD W L R N HLP +++V++ F
Sbjct: 68 DAGVSAVAQTVAFAA---PD-W--------LTPRAFNGHLPGSVRVWAAADVPDGFHATH 115
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y L A G + A D + D L F GEH FHN T
Sbjct: 116 DATRRTYRYHLYAPARGDGADRDHAVDDERVRD---ALARFSGEHDFHNLT 163
>gi|257126804|ref|YP_003164918.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
gi|257050743|gb|ACV39927.1| tRNA pseudouridine synthase A [Leptotrichia buccalis C-1013-b]
Length = 251
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 40/196 (20%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
++K+ V + Y G+ + G Q Q + T++GE+E + K Q I
Sbjct: 1 MKKRNVKIVYQYDGSKFCGFQRQ---MGIKTVQGEIEKVISKTF---------FQNINMI 48
Query: 135 RSSRTDKGVHSLATM--ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
S RTDKGVH++ + + IP +A K +++N L IK+ I
Sbjct: 49 SSGRTDKGVHAIEQVSNFMIDQNIPLNAIK---------RQLNKRLKGEIKILDIEEMDE 99
Query: 193 SFDPRRECNLRKYSYLLPAE----------VIGINSQLTAAEIDSHISDFNAILNEFEGE 242
F+ R + R Y Y++ E + GI + I F I+ EF G+
Sbjct: 100 KFNSRFDAQNRTYLYIMKVEDEITPFETNYITGIKEMI-------DIDKFQKIMLEFIGK 152
Query: 243 HPFHNYTERSKYRRKP 258
H F ++ ++ K R P
Sbjct: 153 HDFSSFMKKDKAYRNP 168
>gi|448336302|ref|ZP_21525405.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
gi|445629415|gb|ELY82700.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
Length = 285
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GTDY G Q Q + + T+E + AL +A + + + + +A + RTD
Sbjct: 5 AFRIAYDGTDYHGFQRQ-PQPDIPTVENAVFDAL-RALAVLDPDAD--KPAGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA I L++ PD W + +NA LP +++ ++ + F
Sbjct: 61 AGVSALAQTIALEV---PD-WL-------TPRALNAELPADVRAWAAADTPDEFHATHHA 109
Query: 201 NLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y+Y L PA+ +S TA +D F A + G H HN T
Sbjct: 110 SRRAYTYHLYAPPADAAPSDSDATATAVDDER--FRAACDALSGTHDIHNLT 159
>gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis]
gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis]
Length = 509
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V ++V Y G DY+G Q D S+ TIE L AL + I N
Sbjct: 92 WASAHKRHVLIKVMYFGWDYQGFACQED--SMDTIEAYLFRALIRTCLIESRATSN---- 145
Query: 132 AWARSSRTDKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
+ R RTDK V + +I + + ++ P+A + ID +N LP+NI+
Sbjct: 146 -YHRCGRTDKEVSAFCQVISIDLRSKHAPDVQMEPEALSSE---IDYCSLLNRVLPKNIQ 201
Query: 184 VFSILPSQR-SFDPRRECNLRKYSYLLPAEVIGINSQLTAAE 224
S +P + ++ R +C R Y Y P + I + A +
Sbjct: 202 CVSWMPLRNPAYSARFDCISRTYRYYFPKGDLDIEAMRIACQ 243
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 67 SSDDKWEPVRKKK------VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
SS K +PVR + VA + Y G +Y GL Q + L T+EG++ AL +A I
Sbjct: 75 SSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLI 134
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
+ + +++R RTDKGV ++ +I L + + I +N LP
Sbjct: 135 TDPS-----SCSFSRCGRTDKGVSAMGQVISLNVR------HSERRPIIYCDVLNRLLPA 183
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
+I++ FD R C R Y YL + G +D I N +
Sbjct: 184 DIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPG-------GSLD--IDRMNEAAALYL 234
Query: 241 GEHPFHNYTE 250
GEH F N+ +
Sbjct: 235 GEHDFRNFCK 244
>gi|51598275|ref|YP_072463.1| tRNA pseudouridine synthase A [Borrelia garinii PBi]
gi|62901275|sp|Q663A0.1|TRUA_BORGA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|51572846|gb|AAU06871.1| pseudouridylate synthase I [Borrelia garinii PBi]
Length = 246
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEITYDGSIYHGFQIQPTK---PTIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNAILLKNSIKILKLKYMKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYLAKFKKRGK 181
>gi|154249373|ref|YP_001410198.1| tRNA pseudouridine synthase ACD [Fervidobacterium nodosum Rt17-B1]
gi|171769414|sp|A7HKV8.1|TRUA_FERNB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|154153309|gb|ABS60541.1| tRNA pseudouridine synthase A [Fervidobacterium nodosum Rt17-B1]
Length = 246
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VA+ Y GTD+ G Q+Q +++ T++GELE AL K I Y +
Sbjct: 2 RRVAIEFSYDGTDFFGYQIQ---NNVRTVQGELEKALEKVFKIHIDTYA---------AG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+ ++ + P D ++ D+ +NA+LP +I + + + +F+PR
Sbjct: 50 RTDTGVHANGQVVSF--DCPNDRLMEN----DIKNAINANLPGDIYIKKVWFTHPTFNPR 103
Query: 198 RECNLRKYSYLL 209
E R Y Y +
Sbjct: 104 YEAKRRIYHYYI 115
>gi|408670645|ref|YP_006870716.1| tRNA pseudouridine synthase A [Borrelia garinii NMJW1]
gi|407240467|gb|AFT83350.1| tRNA pseudouridine synthase A [Borrelia garinii NMJW1]
Length = 246
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNAILLNNSIKILKLKYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYLAKFKKRGK 181
>gi|448308199|ref|ZP_21498078.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
gi|445594309|gb|ELY48471.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
Length = 282
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GT Y G Q Q D +ST+E + AL + + +A + RTD
Sbjct: 3 AFRIAYDGTGYYGFQRQPD---VSTVEDTIFDALRSLDVLAPDAD---KPAGYAAAGRTD 56
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA I L E P AW + +NA LP ++ ++ SF +
Sbjct: 57 AGVSALAQTITL--EGP--AWL-------TPRALNAELPAAVRAWAFADVDDSFHATHDA 105
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDSHISD--FNAILNEFEGEHPFHNYT 249
R Y+Y L A +S T AEI+ I D F+A H FHN T
Sbjct: 106 TRRTYTYHLYAPAAVDDSSATPAEIEHPIDDDRFHAACEALSDTHDFHNLT 156
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 85/205 (41%), Gaps = 51/205 (24%)
Query: 77 KKKVALRVGYVGTDYRGL----QMQRDEHSLSTIEGELETALFKA----GGIRESNYGNL 128
K+ +AL+V Y G + G QM+ T+E E+ AL KA GG +ES Y
Sbjct: 111 KRYIALKVMYFGQRFYGFASEAQME------PTVESEIFRALEKARLLVGGRKESCY--- 161
Query: 129 QKIAWARSSRTDKGVHSLATMICL----KMEIPPDAWKDDPYG-------IDLAKRVNAH 177
+R RTDKGV S+ +I L ++ PP+ G ID + +N
Sbjct: 162 -----SRCGRTDKGVSSVGQVIALYLRSNLKDPPNGENSCHNGEEQHDGEIDYVRVINKV 216
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN 237
LP +I+V F R C RKY Y + I++ A +
Sbjct: 217 LPNDIRVLGWCSVPVGFSARFSCLRRKYKYFFWGANLNISAMERAGK------------- 263
Query: 238 EFEGEHPFHNYTERS-----KYRRK 257
+F GEH F N+ + YRR+
Sbjct: 264 KFVGEHDFRNFCKMDAANVHNYRRR 288
>gi|349577915|dbj|GAA23082.1| K7_Deg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 442
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQGDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni]
gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni]
Length = 495
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 21/197 (10%)
Query: 47 SSSSKSSPSVSHTLTRPTPNSSDDK-----WEPVRKKKVALRVGYVGTDYRGLQMQRDEH 101
+S++K + S++++ P+ + S+ + W K+ V L+V Y G DY+G Q D
Sbjct: 74 ASTAKDTSSINNS---PSGSKSNKRQRSFDWASAHKRHVLLKVTYFGWDYQGFACQED-- 128
Query: 102 SLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIP-PDA 160
S TIE L AL + I N + R RTDK V + +I + + P
Sbjct: 129 SNDTIESNLFRALTRTCLIESRANSN-----YHRCGRTDKEVSAFCQVISIDLRSKYPAE 183
Query: 161 WKDDPYG----IDLAKRVNAHLPRNIKVFSILPSQRS-FDPRRECNLRKYSYLLPAEVIG 215
+ DP ID +N LP+NI+ + +P + + R +C R Y Y P +
Sbjct: 184 SQLDPTSLATEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCIARSYRYYFPKGDLD 243
Query: 216 INSQLTAAEIDSHISDF 232
I + A ++ + +DF
Sbjct: 244 IEAMQEACQLLVNHADF 260
>gi|448439765|ref|ZP_21588177.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
gi|445690917|gb|ELZ43120.1| tRNA pseudouridine synthase A [Halorubrum saccharovorum DSM 1137]
Length = 291
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 75/171 (43%), Gaps = 20/171 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H+ +T+EG L AL + G + R + +A + RT
Sbjct: 10 AFRVAYDGREYAGFQRQ--PHA-TTVEGTLLRALAEHGILDRGDGPTHATPPGYAAAGRT 66
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + PD W L R N HLP +++V++ + F
Sbjct: 67 DAGVSAVAQTVAFAA---PD-W--------LTPRAFNGHLPGSVRVWAAADAPTDFHATH 114
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y L A G + A D + D L F GEH FHN T
Sbjct: 115 DAVRRTYRYHLYAPARGDGADRDYAVDDGRVRD---ALVRFSGEHDFHNLT 162
>gi|383320001|ref|YP_005380842.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
gi|379321371|gb|AFD00324.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
Length = 269
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 32/171 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K AL++ Y+GTD+ G Q Q + T+EGEL+ L + G I E + S R
Sbjct: 4 KPALKLAYIGTDFSGSQAQPGKR---TVEGELKKGLIEKGIIDERTRVSF-------SGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ K D +P + +N+ +P+++ V++ FDPRR
Sbjct: 54 TDAGVHALGQVVSFKAL---DERLVEP------RIINSVMPKDLWVYASASVPDDFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y+L A + ++ I + + + F G H F N++
Sbjct: 105 DATSRTYRYVLYAPDV----------VERRIVECSKL---FIGTHDFTNFS 142
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa]
gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa]
Length = 465
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 42/222 (18%)
Query: 44 CPASSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSL 103
C S K++P TP ++ VAL+V Y G + G ++
Sbjct: 67 CKKSGRKKATPK--------TPGYDTRIMNHHPRRYVALKVMYFGQRFYGFSLE------ 112
Query: 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--------- 154
+ ++ +E+ +FKA G+ ++I ++R RTDKGV ++ +I L +
Sbjct: 113 AQMDPTVESEIFKALETTRLLIGDRKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDIDA 172
Query: 155 ------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYL 208
E P+ P ID + +N LP++I++ P F R C R+Y Y
Sbjct: 173 HNKHSGETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVGWCPVPSDFSARFSCLSREYKYF 232
Query: 209 LPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ + + TA + + GEH F N+ +
Sbjct: 233 FWNDNLNLLVMETAGK-------------KLIGEHDFRNFCK 261
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 82/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTAN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDD---PYGI-DLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P D +D G+ D AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSYFPKDRDSEDLNIKDGVGDAAKEIRYTHILNRVLPADIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N +++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IEAMNCAAHKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba]
gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba]
Length = 497
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 92 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIEANLFRALTRTCLIESRATSN---- 145
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 146 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTAISTEIDYCGLLNRVLPKNIQCV 203
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + + R +C R Y Y P + I + A ++ +DF
Sbjct: 204 AWMPLRSPVYSARFDCVSRSYRYYFPKGDLDIAAMSKACDLLVRHADF 251
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 45/192 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ N + R
Sbjct: 73 RRHVALRLAYLGWAYQGFAVQ--ENTDNTVEARLFEALLKTRLIQDRQSSN-----YHRC 125
Query: 137 SRTDKGVHSLATMIC-----------LKMEIPPD----------AWKDDPYGIDLAKRVN 175
RTDKGV + + +I L + +P + A + PY K +N
Sbjct: 126 GRTDKGVSAFSQVITIDLRSTQFCAGLGITLPENVDVSTKATSSATSELPY----VKMLN 181
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
LP++I+V P F R +C R Y Y P + + AA+
Sbjct: 182 RVLPQDIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAK----------- 230
Query: 236 LNEFEGEHPFHN 247
+EG H F N
Sbjct: 231 --RYEGTHDFRN 240
>gi|14318522|ref|NP_116655.1| pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
gi|399356|sp|P31115.1|PUS3_YEAST RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=Depressed growth-rate protein DEG1; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae]
gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae]
gi|285811895|tpg|DAA12440.1| TPA: pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
Length = 442
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|68487205|ref|XP_712546.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
gi|68487266|ref|XP_712516.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|74679680|sp|Q59S63.1|PUS1_CANAL RecName: Full=tRNA pseudouridine synthase 1; AltName: Full=tRNA
pseudouridylate synthase 1; AltName: Full=tRNA-uridine
isomerase 1
gi|46433909|gb|EAK93335.1| hypothetical protein CaO19.3477 [Candida albicans SC5314]
gi|46433941|gb|EAK93366.1| hypothetical protein CaO19.10981 [Candida albicans SC5314]
Length = 450
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+L+K + R++RTDKGVH+ +I LKM I +DP ++ ++N LP+ I+++
Sbjct: 35 HLKKSGFQRAARTDKGVHAAGNVISLKMII------EDP---EIINKINDLLPKQIRIWG 85
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPA 211
I + + FD R+ C+ R Y YLLP
Sbjct: 86 IQRATKGFDCRKCCSSRIYEYLLPT 110
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ I I G+SFMLHQIRKM+ A V R LP I+ + + ++I +P AP+ L
Sbjct: 270 GTEWISIKIHGQSFMLHQIRKMIAMAALVVRLSLPCGIIN-NFFQSTKINIPKAPALGLL 328
Query: 440 LRANSF 445
L F
Sbjct: 329 LENPVF 334
>gi|448328805|ref|ZP_21518111.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
gi|445615109|gb|ELY68768.1| tRNA pseudouridine synthase A [Natrinema versiforme JCM 10478]
Length = 285
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y G DY G Q Q D +ST+E + +L +A + E + + +A + RTD
Sbjct: 5 AFRIAYDGRDYHGFQRQPD---VSTVEDAIFDSL-RALDVLEEDAD--KPAGYAAAGRTD 58
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQRSFDPRRE 199
GV +LA I L+ PD W LA R +NA LP +I+ ++ + F
Sbjct: 59 AGVSALAQTIALEA---PD-W--------LAPRALNAELPADIRAWAAAEAPDGFHATHH 106
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAE-IDSHISD--FNAILNEFEGEHPFHNYT 249
+ RKY+Y L A G ++ +AA+ I + D F A G H HN T
Sbjct: 107 ASRRKYTYHLYAPPAGEATRDSAADPIAPAVDDDRFRAACEALSGTHDLHNLT 159
>gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 442
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|219685340|ref|ZP_03540159.1| tRNA pseudouridine synthase A [Borrelia garinii Far04]
gi|219673113|gb|EED30133.1| tRNA pseudouridine synthase A [Borrelia garinii Far04]
Length = 246
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYEGSIYHGFQIQPTK---PTIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +N+ L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNSILLKNSIKILKLKYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
Length = 353
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 17/160 (10%)
Query: 60 LTRPTPNSSDD-KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAG 118
++ P P + + W+ ++++ALR+ Y+G + +G +Q D + T+E + AL +A
Sbjct: 1 MSEPKPKTKKEFSWDQYHERQIALRIAYIGWNLKGFVLQNDTN--ETVEYHIFEALKRAK 58
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME---------IPPDAWKDDPYGID 169
IR N N ++ RTD GV + +I +++ IP + K ++
Sbjct: 59 LIRNENECN-----YSLCGRTDAGVSGVGNVISVRVRSVCPTGLGSIPREGAKVQKEEMN 113
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLL 209
A+ +N LP +I+V + + F+ R +C R Y Y
Sbjct: 114 YAQILNGILPPSIRVTGVAYVKPDFNARFDCATRGYRYFF 153
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 222
Query: 245 FHN 247
F N
Sbjct: 223 FRN 225
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 222
Query: 245 FHN 247
F N
Sbjct: 223 FRN 225
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 222
Query: 245 FHN 247
F N
Sbjct: 223 FRN 225
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 222
Query: 245 FHN 247
F N
Sbjct: 223 FRN 225
>gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster]
gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster]
gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster]
gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct]
gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct]
Length = 499
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 93 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIESNLFRALARTCLIESRATSN---- 146
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 147 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTALSSEIDYCGLLNRVLPKNIQCV 204
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + + R +C R Y Y P + I + A ++ +DF
Sbjct: 205 AWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHADF 252
>gi|341581737|ref|YP_004762229.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
gi|340809395|gb|AEK72552.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
Length = 267
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+ ALR+ Y GT + G Q Q D + T+EGEL AL K G IR++ N + +SR
Sbjct: 2 RFALRIAYDGTAFYGFQRQPD---VRTVEGELIRALSKLGIIRDAESSNFKG-----ASR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GV ++ ++ + PD + A+ +N HL R++ V + F PR
Sbjct: 54 TDRGVSAIFNVVAFDVASRPDLVR--------AEVLNHHL-RDLWVLGVAEVPDDFHPRF 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ + Y Y L E G N + D F GEH F ++
Sbjct: 105 QARSKTYRYYLVDE--GFNER-----------DMRECAALFVGEHDFSAFS 142
>gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans]
gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans]
Length = 498
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 93 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIESNLFRALTRTCLIESRATSN---- 146
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----IDLAKRVNAHLPRNIKVF 185
+ R RTDK V + +I L+ + PP++ + DP ID +N LP+NI+
Sbjct: 147 -YHRCGRTDKEVSAFCQVISIDLRSKHPPES-QLDPTSLSSEIDYCGLLNRVLPKNIQCV 204
Query: 186 SILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + + R +C R Y Y P + I + A ++ +DF
Sbjct: 205 AWMPLRSPVYSARFDCVSRSYRYYFPKGDLDIAAMRKACDLLVRHADF 252
>gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118]
Length = 442
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSM---VLQNYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 69 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 121
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 122 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 181
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 182 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 228
Query: 245 FHN 247
F N
Sbjct: 229 FRN 231
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 44/191 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G +Q E++ +T+E L AL K I++ N + R
Sbjct: 74 RRHVALRLAYLGWAYQGFAVQ--ENTDNTVEARLFEALLKTRLIQDRQSSN-----YHRC 126
Query: 137 SRTDKGVHSLATMICLKM---------------EIPPD-----AWKDDPYGIDLAKRVNA 176
RTDKGV + + +I + + ++ P A + PY K +N
Sbjct: 127 GRTDKGVSAFSQVITIDLRSTQFCGGLGVTVPEKVDPSIKSKAASSELPY----VKMLNR 182
Query: 177 HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAIL 236
LP++I++ P F R +C R Y Y P + + AA+
Sbjct: 183 VLPQDIRILDCAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMEDAAK------------ 230
Query: 237 NEFEGEHPFHN 247
+EG H F N
Sbjct: 231 -RYEGTHDFRN 240
>gi|392299670|gb|EIW10763.1| Deg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 442
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|392587350|gb|EIW76684.1| pseudouridine synthase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 493
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 60/215 (27%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+AL+ Y G +Y GL+ Q+D L T+E L AL K I E G + W +
Sbjct: 57 RKIALKFCYSGWEYNGLEFQKDATRLPTVEDVLFKALAKTKLIDED--GGFEACGWEKCG 114
Query: 138 RTDKGVHSLATMICLKM-------------EIPPDAWKDDP------------------- 165
RTD GV + ++ L + + PP+ D+P
Sbjct: 115 RTDIGVSAAGQVVSLWIRSAFEENRGARIPQSPPEDSSDNPNDISAVSAEDATEDVPPDF 174
Query: 166 -------------YGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAE 212
G+ +N LP ++V + P + +F R C R Y Y P+
Sbjct: 175 TSLTVRRRPTNELRGLRYVTMLNRVLPPTVRVLAWSPVEPTFSARFNCRHRHYKYFFPSR 234
Query: 213 VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ I+ AA+ GEH F N
Sbjct: 235 ELDISLMQQAADY-------------LVGEHDFRN 256
>gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13]
gi|365765842|gb|EHN07347.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 442
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSM---VLQBYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB]
Length = 431
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 83 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 139
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 140 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 199
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 200 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 243
>gi|401409978|ref|XP_003884437.1| Pseudouridylate synthase, related [Neospora caninum Liverpool]
gi|325118855|emb|CBZ54407.1| Pseudouridylate synthase, related [Neospora caninum Liverpool]
Length = 822
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 99 DEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156
D L T+EG LE +L AGGI S+ G LQK+ W+R++RTD+GVH+ +I LK+ +
Sbjct: 298 DAVPLRTVEGVLEESLLAAGGIAPSHLGCLQKLQWSRAARTDRGVHAACNVISLKLSL 355
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 160 AWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPA 211
AW+ + LA R+NA LP +I+ F++ ++FD R C+ R+Y++LLPA
Sbjct: 442 AWQREREAAFLA-RLNAVLPPDIRCFAVRRVTKNFDARISCSRRRYAFLLPA 492
>gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
Length = 312
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 75/186 (40%), Gaps = 35/186 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ VAL+V Y+G Y G Q Q E + +TIE L AL K I + N + R
Sbjct: 68 RHVALKVAYLGWSYDGFQSQ--ETTDNTIEARLFEALTKTRLIEKRQSSN-----YHRCG 120
Query: 138 RTDKGVHSLATMICLKME---------IP-PDAWKDDPYG-----IDLAKRVNAHLPRNI 182
RTDKGV + +I L + IP P+ + G I +N LP +I
Sbjct: 121 RTDKGVSAFGQVISLDLRTNLTDGAGVIPRPEGTANHREGDKTTEIKYVYILNKVLPPDI 180
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P F R C R Y Y P + I S A + + GE
Sbjct: 181 RVLAWAPVDPDFSARFSCQQRTYKYFFPKGNLDIQSMHLAGQ-------------KLVGE 227
Query: 243 HPFHNY 248
H F N+
Sbjct: 228 HDFRNF 233
>gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a]
gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291]
gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEFTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
gi|259550478|sp|C6A238.1|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
Length = 266
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL++ Y GT + G Q Q D L T+EGEL L K G I + N + +SR
Sbjct: 2 RIALKIAYDGTKFYGFQRQPD---LRTVEGELIKVLKKLGIIEDVKEANFKG-----ASR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GV +L +I P A A+ +N HL R+I + F PR
Sbjct: 54 TDRGVSALGNVIAFNTAKPELA---------EARILNHHL-RDIWILGKAEVPEDFHPRF 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ Y Y L E I + AE F G H F N+ ++R+
Sbjct: 104 WAKNKIYRYYLFDEGIDVIKLKACAE-------------AFLGRHDFSNFARLEEFRKPV 150
Query: 259 HKTGRVSKRAKASKDAVFSR----VEESEGE 285
+ R+ VFSR V E EG+
Sbjct: 151 REINRID---------VFSRGRIIVVEIEGK 172
>gi|123438137|ref|XP_001309856.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
gi|121891601|gb|EAX96926.1| tRNA pseudouridine synthase family protein [Trichomonas vaginalis
G3]
Length = 365
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL GY+GT+Y G + + T+ EL+ AL G I + K W+ SSRT
Sbjct: 40 IALCYGYLGTNYHGSSLHDQD---KTVTLELQEALVNLGVISPNRTKGALK--WSESSRT 94
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGI---DLAKRVNAHLPRN--IKVFSILPSQRSF 194
D GVH+ + ++ +P G+ DL + + L +N I+V++ + F
Sbjct: 95 DTGVHAAKQVATFRLVLPE--------GVKVKDLPRLIQKQLSKNSPIRVWAAVKPGIIF 146
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA-ILNEFEGEHPFHNYT 249
+ ++ + R+Y YLLP + ++ ID H++ A I F G H + NYT
Sbjct: 147 NAQQSASSRRYHYLLPV------NTFSSENID-HLNYLRAKICPIFVGRHQYANYT 195
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G YV +ISG SFML+QIRKM+ +AV L+ D L +L + +R +LP LF
Sbjct: 223 GTKYVLFTISGNSFMLNQIRKMIAAVLAVSHHLMTEDDLKDTLTE-TRWLLPRLIGTGLF 281
Query: 440 L 440
L
Sbjct: 282 L 282
>gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae]
Length = 401
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 46/229 (20%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y+G ++ GL Q + + +T+E L AL K I +S K ++R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQPN--TQNTVEHHLMEALIKTHIIEDS-----IKCDFSRC 81
Query: 137 SRTDKGVHSL-ATMICLKMEIPPD----------------AWKDDPYGIDLAKRVNAHLP 179
RTDKGV + T L PD ++K + K +N LP
Sbjct: 82 GRTDKGVSAFKQTAAFLARSTCPDHPNVFWSDSTAEDVKNSYKSKDEELPYIKMLNGVLP 141
Query: 180 RNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEF 239
+ I+VF+ P +F+ R +CN R Y Y P + + AA++
Sbjct: 142 KTIRVFAWAPVAPTFNARFDCNRRTYKYSFPKAGLDLEKMREAAKL-------------L 188
Query: 240 EGEHPFHNYTE--------RSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
GEH + N+ + Y RK + V + + S++ ++S VE
Sbjct: 189 IGEHDYSNFCQIDMNKMRLEQSYTRKIYDVT-VEQVSTHSENDIYSMVE 236
>gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa]
gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa]
Length = 414
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 46/192 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+++AL Y G +Y GL Q++ TIE E+ AL K + + + W R
Sbjct: 31 KRRIALMFMYFGWEYNGLVEQQE--IAGTIEEEMRKALMKTKLVE-----SWENCGWNRC 83
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYG--------------------IDLAKRVNA 176
RTDKGV + + L + ++P G + K +N+
Sbjct: 84 GRTDKGVSAFKQVASLIVR------SNEPEGEGVFWPAIAHTSSETAVKGELQYVKMLNS 137
Query: 177 HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAIL 236
LP NI+V + P +F R C R Y+Y P I + A +
Sbjct: 138 TLPTNIRVLAWAPVPENFSARYRCTQRTYTYAFPRANFDIEAMRQACQF----------- 186
Query: 237 NEFEGEHPFHNY 248
GEH F N+
Sbjct: 187 --LVGEHDFRNF 196
>gi|374628788|ref|ZP_09701173.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
gi|373906901|gb|EHQ35005.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
Length = 260
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 18/157 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K+A ++GY G ++ G Q Q + T+EGE TA G IR+ + ++ S R
Sbjct: 2 KIAFKLGYFGDNFHGSQQQSNRR---TVEGEFITACIDLGLIRDR-----KSSGFSISGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GVH+ + + P A +N LP +I F+ S++PR
Sbjct: 54 TDRGVHARCQICSFFTDHPERA----------VFAINEKLPGDIWCFAYAEVDDSYNPRY 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+ RKY Y E + S A++ + DF +
Sbjct: 104 DVFSRKYRYYFYEEGLDHESMQKASQYIKGVHDFTSF 140
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
+++VALR+ Y+G Y+G Q E++ +TIE +L A+ K I Q ++ R
Sbjct: 62 RRRVALRIAYLGWGYQGFASQ--ENTDNTIEEKLFEAMTKTRLIESR-----QTSSYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIP----------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P + DD I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGKDSEDLNLKNEVSDDAKEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------LADLD--IVRMNYAAQKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
Length = 443
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K+ VAL++ Y G + G + + +E +E+ +FKA G+ + ++
Sbjct: 87 ISKRYVALKIMYFGKRFYGFSAE------AQMEPSIESEVFKALERTRLLVGDKKDSCYS 140
Query: 135 RSSRTDKGVHSLATMICL----KMEIPPDAWKDDPYG-------IDLAKRVNAHLPRNIK 183
R RTDKGV S +I L +++ PP K G D + +N LP +I+
Sbjct: 141 RCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERPEYDYVRVLNRALPDDIR 200
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
V P+ F R C R+Y Y + N L+A +I +F GEH
Sbjct: 201 VIGWSPAPVDFHARFSCYAREYKYFFWRQ----NLNLSAMDIAG---------KKFIGEH 247
Query: 244 PFHNYTE 250
F N+ +
Sbjct: 248 DFRNFCK 254
>gi|339248313|ref|XP_003375790.1| tRNA pseudouridine synthase A [Trichinella spiralis]
gi|316970789|gb|EFV54664.1| tRNA pseudouridine synthase A [Trichinella spiralis]
Length = 390
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+++ K A+ + Y G +Y G+Q+ + + T+E + AL K I +
Sbjct: 49 IKRYKYAMFLAYRGKNYHGMQVNPN---VPTVEKYIMEALQKLNLITVDQVVQPSLFKFQ 105
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R++RTDKGV S IC + +P K++ D +N L R + +SF
Sbjct: 106 RAARTDKGV-SATKQIC-SLLLPTIEGKEN----DTVNLLNG-LQR---------ATKSF 149
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEI---DSHISDFNAILNEFEGEHPFHNYTER 251
D ++ C+ R YSY LP+ S L + + I + N IL ++ G H F+N+T
Sbjct: 150 DSKKWCDYRSYSYTLPSYCFRHQSDLERDKFRLDNKDIEEINRILMQYVGTHNFYNFT-- 207
Query: 252 SKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
S K R R + K +++ +E
Sbjct: 208 SGKLHKDESCKRFIIRCECGKRFLYNNIE 236
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C CGK Y+ + I G+SF++HQIRKM+G +++ R L L + +
Sbjct: 219 RFIIRCECGKRFLYNNIEYLTVDIKGQSFLIHQIRKMIGFCISLIRGDLD-PCLQQKVWQ 277
Query: 425 HSRIVLPLAPSEVLFL 440
+ RI +P APS L L
Sbjct: 278 NERIKVPKAPSLGLVL 293
>gi|288932131|ref|YP_003436191.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642]
gi|288894379|gb|ADC65916.1| tRNA pseudouridine synthase A [Ferroglobus placidus DSM 10642]
Length = 256
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 22/145 (15%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+A ++ Y+GT++ G Q Q + L T+EGE+ A KAG YG KI +A RT
Sbjct: 1 MAFKIAYIGTNFHGSQYQPE---LRTVEGEIRKAFEKAG----IEYG---KIMFA--GRT 48
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
D GVH++ + +E + + K++N++LP ++ V+ +F PR+
Sbjct: 49 DAGVHAIGNVFATDLE---------EFSKKVVKKLNSNLPEDVSVWGYKVVDENFKPRK- 98
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAE 224
RKY Y++ E + AA+
Sbjct: 99 AKWRKYCYVILDEGYNLEEMKEAAK 123
>gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans]
Length = 444
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ V L+ Y G DY+G Q D S +TIE L AL + I + N + R
Sbjct: 54 KRHVLLKFLYFGWDYQGFACQED--SNNTIEFHLFKALTRTCLIESRSSAN-----YHRC 106
Query: 137 SRTDKGVHSLATMIC--LKMEIPPDAWKDDPY---GIDLAKRVNAHLPRNIKVFSILPSQ 191
RTDK V + +I L+ + P ++ ID +N LP+NI+ S +P +
Sbjct: 107 GRTDKKVSAFCQVISIDLRSKFPEKQQFEESCLEKEIDYCGIMNRVLPKNIRCISWMPIR 166
Query: 192 RS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI--LNEFEGEHPFHNY 248
F R +C R Y Y P + I + A ++ +DF + ++ G + +
Sbjct: 167 NHLFSARFDCITRTYRYFFPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHNGVTNYVRH 226
Query: 249 TERSKYRRKPHKT 261
E + R PH+
Sbjct: 227 IEAANVRLCPHQN 239
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 92 QRHVALRIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 144
Query: 137 SRTDKGVHSLATMICLKM------------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + D+ D I +N LP +I+V
Sbjct: 145 GRTDKGVSAFGQVISLNLRSQLIGSKKPEDQSLKDSINDTVEEIRYTHILNRVLPPDIRV 204
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 205 LAWAPVEPSFSARFSCLERTYRYFFPCADLDIEAMNDAAQKYVGTHDF 252
>gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 398
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 44/191 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA-WAR 135
K+ VALR Y+G +Y G +Q D + +E ALF+A ++ + +L++ + + R
Sbjct: 1 KRHVALRFLYLGWNYDGYVVQEDTAN------TVEAALFQA--LQRTRLLDLRETSNYHR 52
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYG-------------------IDLAKRVNA 176
RTDKGV + + +I + + + P G +D K +N
Sbjct: 53 CGRTDKGVSAFSQVISIDLR---SNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNG 109
Query: 177 HLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAIL 236
LP +I+V + P++ SF R +C R Y Y LP + + AA++
Sbjct: 110 VLPPDIRVLAWAPAEPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKL----------- 158
Query: 237 NEFEGEHPFHN 247
GEH F N
Sbjct: 159 --LVGEHDFRN 167
>gi|357480137|ref|XP_003610354.1| tRNA pseudouridine synthase [Medicago truncatula]
gi|355511409|gb|AES92551.1| tRNA pseudouridine synthase [Medicago truncatula]
Length = 361
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V+ I G+SFMLHQIRKM+G AVA+ R P ++ +L K I +P AP L+
Sbjct: 206 GMEFVKCEIVGQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLY 265
Query: 440 LRANSFS 446
L F+
Sbjct: 266 LDECFFT 272
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 60 RRHVALRIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 112
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGI-----DLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P+ + + + D AK + N LP +I+V
Sbjct: 113 GRTDKGVSAFGQVISLDLRSHFPNGRDSEDFNLKDEVNDAAKEIRYTHILNRVLPPDIRV 172
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N+ ++ G H
Sbjct: 173 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IITMNSAAQKYVGTHD 219
Query: 245 FHN 247
F N
Sbjct: 220 FRN 222
>gi|448453731|ref|ZP_21594074.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|448485752|ref|ZP_21606897.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
gi|445807531|gb|EMA57616.1| tRNA pseudouridine synthase A [Halorubrum litoreum JCM 13561]
gi|445817451|gb|EMA67325.1| tRNA pseudouridine synthase A [Halorubrum arcis JCM 13916]
Length = 305
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G Y G Q Q H+ ST+ L AL + G + R + + +A + RT
Sbjct: 14 AFRVAYDGRGYAGFQRQ--PHA-STVADALLEALAEHGVVERGDGSTHATPVGYAAAGRT 70
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + E P W L R N HLP +++V++ + F
Sbjct: 71 DAGVSAVAQTVAF--EAP--TW--------LTPRAFNGHLPGSVRVWAAADVEGGFHATH 118
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEID-SHISD---FNAILNEFEGEHPFHNYT 249
+ R Y Y L A G S D H D F A L F+GEH FHN T
Sbjct: 119 DAVQRTYRYHLYAPESGSESGSDRTRRDPEHAVDDDRFRAALARFDGEHDFHNLT 173
>gi|448428370|ref|ZP_21584240.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
gi|445676539|gb|ELZ29059.1| tRNA pseudouridine synthase A [Halorubrum terrestre JCM 10247]
Length = 305
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 75/175 (42%), Gaps = 21/175 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G Y G Q Q H+ ST+ L AL + G + R + + +A + RT
Sbjct: 14 AFRVAYDGRGYAGFQRQ--PHA-STVADALLEALAEHGVVERGDGSTHATPVGYAAAGRT 70
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + E P W L R N HLP +++V++ + F
Sbjct: 71 DAGVSAVAQTVAF--EAP--TW--------LTPRAFNGHLPGSVRVWAAADVEGGFHATH 118
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEID-SHISD---FNAILNEFEGEHPFHNYT 249
+ R Y Y L A G S D H D F A L F+GEH FHN T
Sbjct: 119 DAVQRTYRYHLYAPESGSESGSDRTRRDPEHAVDDDRFRAALARFDGEHDFHNLT 173
>gi|348689580|gb|EGZ29394.1| hypothetical protein PHYSODRAFT_358674 [Phytophthora sojae]
Length = 935
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%)
Query: 358 KLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDI 417
KL H R I+SCS + G ++ + I G++F+L+QIR MVG A+AV K + R
Sbjct: 235 KLLTRHRRSIYSCSGSLVPDFCGEPHLRVHIVGQAFLLNQIRCMVGGALAVATKGMSRVA 294
Query: 418 LTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
+L + + +P+AP+E L L ++SF
Sbjct: 295 FDAALLTNRIVRVPIAPAEGLVLLSSSFG 323
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 7/133 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+AL+ Y G +Y GL Q L T+EG L AL KA I + + W +
Sbjct: 49 RRKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQE--AGFEGCGWEKC 106
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD+GV + ++ L ++ D I +N LP I+V + P F
Sbjct: 107 GRTDRGVSAAGQVVSLWATTSKPTFEHDYLSI-----LNRLLPDTIRVLAWSPVAPKFSA 161
Query: 197 RRECNLRKYSYLL 209
R C R Y Y
Sbjct: 162 RFSCLYRHYKYFF 174
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 24/171 (14%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VALR+ Y+G Y+G Q E++ +T+E + AL K + N + R
Sbjct: 61 KQHVALRLAYLGWGYQGFASQ--ENTKNTVEETVFNALIKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD+GV +L +I L + + + Y + + RV LP +I+V S SF
Sbjct: 114 GRTDRGVSALGQVISLDLRCSGEGKPEIRY-VHILNRV---LPPDIRVLSWAAVPPSFSA 169
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R C R Y YL + A++D D A L EG H F N
Sbjct: 170 RFSCRSRTYRYL-----------FSCAQLDVEAMDKAARL--LEGTHDFRN 207
>gi|225552068|ref|ZP_03773008.1| tRNA pseudouridine synthase A [Borrelia sp. SV1]
gi|225371066|gb|EEH00496.1| tRNA pseudouridine synthase A [Borrelia sp. SV1]
Length = 246
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 20/133 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALTKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL 209
R RKYSY +
Sbjct: 103 RFSAQKRKYSYFI 115
>gi|242310521|ref|ZP_04809676.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489]
gi|239522919|gb|EEQ62785.1| tRNA pseudouridine synthase A [Helicobacter pullorum MIT 98-5489]
Length = 241
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 19/172 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVA+++ Y G ++ G Q Q+D S+S G LE +F + GI E G S R
Sbjct: 4 KVAMKIAYNGANFCGFQKQKDRQSVS---GFLEE-VFGSVGIFEKIIG---------SGR 50
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TDKGVH+ A +I LK+ PD KD L + +N L +K+ I F R
Sbjct: 51 TDKGVHASAQVISLKI---PDFHKDLQ---KLQEILNLKLYPLVKIKKIWRVDDDFHARF 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ R Y Y++ E + ++ L EFEG H F + +
Sbjct: 105 DAKRRGYCYVISQEYSPFIAPFAHYYCFQNVGIIKEALREFEGLHNFKAFMK 156
>gi|125583196|gb|EAZ24127.1| hypothetical protein OsJ_07867 [Oryza sativa Japonica Group]
Length = 518
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I S + ++ G ++ + G+SFMLHQIRKM+G AVAV R P I ++ K
Sbjct: 347 RFIISFAADRVVNLDGIDFIRCEVVGQSFMLHQIRKMIGLAVAVMRNCAPESIYDVAFRK 406
Query: 425 HSRIVLPLAPSEVLFLRANSFS 446
+ +P AP L+L F+
Sbjct: 407 DVNLNVPTAPEVGLYLDECMFT 428
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
DKGV + A ++ + + P + D R+NA L I+ F + SF+ ++
Sbjct: 45 DKGVSAAAQVVSGRFYVDPPVFTD---------RLNAQLAPQIRAFGYVRVTNSFNAKKF 95
Query: 200 CNLRKYSYLLP 210
C+ R+Y YLLP
Sbjct: 96 CDRRRYVYLLP 106
>gi|435847780|ref|YP_007310030.1| pseudouridylate synthase [Natronococcus occultus SP4]
gi|433674048|gb|AGB38240.1| pseudouridylate synthase [Natronococcus occultus SP4]
Length = 289
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 36/219 (16%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y G+DYRG Q Q + + T+E L AL +A G+ E + + +A + RTD
Sbjct: 5 AYRIAYDGSDYRGFQRQ-PQPDVPTVEDVLFDAL-RAHGVLEPDAD--KPTGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRRE 199
GV +L+ I + PD W LA R N LP +++ +++ + F
Sbjct: 61 AGVSALSQTIAFEA---PD-W--------LAPRAFNGELPADVRAWAVADAPADFHATHH 108
Query: 200 CNLRKYSYLL------PAE-VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
+ R+Y+Y L PAE V + T++ +D F+A + H FHN T +
Sbjct: 109 ASRREYTYHLHAPPAHPAEDVDDPEATATSSRVDD--ERFHAACDALSDAHDFHNLTPDN 166
Query: 253 KYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSK 291
H T R S +A++D + V + DGF++
Sbjct: 167 ------HNTER-SPTLEATRDGNYLVVTVT---ADGFAR 195
>gi|357625661|gb|EHJ76033.1| putative pseudouridylate synthase [Danaus plexippus]
Length = 504
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++V L + Y G DY GL +Q D S TIE L AL K+ I ++ + R
Sbjct: 76 RRVLLHIIYFGWDYHGLAVQED--STHTIEHYLFNALVKSCLIESR-----EQSQYHRCG 128
Query: 138 RTDKGVHSLATM--ICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP---SQR 192
RTDKGV + + I L+ ++ P + D I K +N PR+IK + +P +
Sbjct: 129 RTDKGVSAFGQIISISLRSKLEPSS-TDYSSEIQYCKILNRLFPRDIKAVAWMPIPDDRP 187
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAE--IDSH 228
F R +C R+Y Y P + I + A I SH
Sbjct: 188 DFSARFDCKGRQYKYYFPKSNLNITAMREACRQLIGSH 225
>gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi]
gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi]
Length = 503
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 13/167 (7%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W+ ++ V L+V Y G DY+G Q D S TIE L AL + I N
Sbjct: 91 WDSANRRHVLLKVMYFGWDYQGFACQED--SNETIEAFLFRALIRTCLIESRATSN---- 144
Query: 132 AWARSSRTDKGVHSLATMICLKM---EIPPDAWKDDPYG--IDLAKRVNAHLPRNIKVFS 186
+ R RTDK V + +I + + P + D ID +N LP+NI+ S
Sbjct: 145 -YHRCGRTDKEVSAFCQVISIDLRSKHAPDVQLESDSLATEIDYCSLLNRVLPKNIQCVS 203
Query: 187 ILP-SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+P + R +C R Y Y P + I + A ++ DF
Sbjct: 204 WMPLRNHVYSARFDCISRTYRYYFPKGDLDIEAMRMACDLIVCHGDF 250
>gi|403168693|ref|XP_003328281.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167621|gb|EFP83862.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 593
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 90/237 (37%), Gaps = 63/237 (26%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI---------------R 121
K+K+AL + Y G + GL Q D LST+EGEL AL A + R
Sbjct: 104 KRKIALMISYQGELHGGLAWQPDVTRLSTVEGELFRALLVARLVEGAGEFEEQEEEDSER 163
Query: 122 ESNYGNLQKIAWARSSRTDKGVHSLATMICLKME------------IPP------DAWKD 163
+L K ++R+ RTD GV ++ L + +PP D ++
Sbjct: 164 WRGLVDLNKWGYSRAGRTDAGVSGAGQVVSLWVRSQLRSVPAPFGFLPPKKTDSDDGSEE 223
Query: 164 DPYGIDLAKR-----------------VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYS 206
+P G + +N+ LP +++V + P FD R C R Y
Sbjct: 224 EPRGESAGPKQEQEQEEAEEELQYHTIINSILPNSVRVLAWSPVHHDFDARFSCQARHYK 283
Query: 207 YLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT------ERSKYRRK 257
Y + A +D I N + GEH F N+ + + +RRK
Sbjct: 284 YFF-----SLYESPQAPGLD--IEAMNRAADRLIGEHDFRNFCKIDPSKQLAHFRRK 333
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 30/181 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G +Y+G Q E++ +TIE +L AL K ++ N Q + R
Sbjct: 63 RRHVALKIAYLGWEYQGFASQ--ENTNNTIEEKLFEALGKTRLVK-----NRQTSNYHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYG--------IDLAKRVNAHLPRNIKVFS 186
RTDKGV + +I L + +P + D I +N LP +I+V +
Sbjct: 116 GRTDKGVSAFGQVISLDLRSNLPENKPGDTATNKATKASEEIHYTHILNQVLPPDIRVLA 175
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
P + +F R C R Y Y P + + AA+ +F G H F
Sbjct: 176 WAPVEPNFSARFNCLKRTYRYFFPCATLDVALMNRAAQ-------------KFVGTHDFR 222
Query: 247 N 247
N
Sbjct: 223 N 223
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALRIAYLGWSYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----PYGIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P D +D D AK + N LP +I++
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFPKDKDSEDFQLKDEANDSAKEIRYTHILNRVLPPDIRI 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + +F R C R Y Y P A++D I + A ++ G H
Sbjct: 174 LAWAPVEPAFSARFSCLERTYRYFFP-----------RADLDIAIMSYAA--QKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|406694963|gb|EKC98278.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 220
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK+ A+ +GY GT Y G+Q+Q H TIEG+L AL KAG I N + +K+ R+
Sbjct: 150 KKRAAVLLGYCGTGYSGMQIQ--THGSKTIEGDLFEALAKAGAISPENATDHKKVDIQRA 207
Query: 137 SRTDKGVHSLAT 148
+RTD GVH+
Sbjct: 208 ARTDAGVHAAGN 219
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDP----YGIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P DD D+AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKDEADDVAKEIRYTHILNRVLPADIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + F R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPGFSARFNCLERTYRYFFP-----------RADLD--IVTMNYAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana]
gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana]
gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 446
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K+ VAL++ Y G + G + + +E +E+ +FKA G+ + ++
Sbjct: 87 ISKRYVALKIMYFGKRFYGFSAE------AQMEPSIESEVFKALERTRLLVGDKKDSCYS 140
Query: 135 RSSRTDKGVHSLATMICL----KMEIPPDAWKDDPYG-------IDLAKRVNAHLPRNIK 183
R RTDKGV S +I L +++ PP K G D + +N LP +I+
Sbjct: 141 RCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERPEYDYVRVLNRALPDDIR 200
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
V P+ F R C R+Y Y + + +++ DF +F GEH
Sbjct: 201 VIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAM-----------DFAG--KKFIGEH 247
Query: 244 PFHNYTE 250
F N+ +
Sbjct: 248 DFRNFCK 254
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 82/185 (44%), Gaps = 36/185 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD-DPYGIDLAKRVN--------AH-----LPRNI 182
RTDKGV + +I L ++ KD D I+L VN H LP +I
Sbjct: 114 GRTDKGVSAFGQVISL--DLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDI 171
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P + SF R C R Y Y P A++D I N +++G
Sbjct: 172 RVLAWAPVEPSFSARFSCLERTYRYFFP-----------HADLD--IVTMNYAAQKYDGT 218
Query: 243 HPFHN 247
H F N
Sbjct: 219 HDFRN 223
>gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088]
gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088]
Length = 277
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 35/179 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+AL+V Y+GT + G Q Q D L T+EGEL AL + G + ES +A RS+
Sbjct: 2 KKIALKVAYIGTHFFGFQRQPD---LRTVEGELIKALVETGILDESG------VARFRSA 52
Query: 138 -RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTDKGVH+L ++ + D+ I+ ++N+ LP ++ + F
Sbjct: 53 GRTDKGVHALGNVVTF--------FTDEDVIIN---QINSCLPDDVYILGKASVPYGFKT 101
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
R Y+LP + G+N +L +FEG H F N++ R + R
Sbjct: 102 RYAYRRHY-RYVLPND--GLNIELM-----------KEASKKFEGRHDFTNFSRRVEER 146
>gi|356534023|ref|XP_003535557.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 36/198 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL+V Y G + G S + +E +E+ LFKA GN ++ ++R
Sbjct: 81 RRYVALKVMYFGKRFYGFA------SEAQMEPTVESELFKAFEKTRLLVGNKKESQYSRC 134
Query: 137 SRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----------IDLAKRVNAHLPRNIKV 184
RTDKGV S+ +I L+ + + G ID + +N LP +I++
Sbjct: 135 GRTDKGVSSVGQVIALFLRSNLKISETNNGNSGVVLDEQHEGEIDYVRVLNRVLPNDIRI 194
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
P+ F R C R+Y Y E + I + +A N+ GEH
Sbjct: 195 MGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMESAG-------------NKLVGEHD 241
Query: 245 FHNYTERS-----KYRRK 257
F N+ + YRR+
Sbjct: 242 FRNFCKMDAANVHNYRRR 259
>gi|401887158|gb|EJT51162.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 202
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
KK+ A+ +GY GT Y G+Q+Q H TIEG+L AL KAG I N + +K+ R+
Sbjct: 132 KKRAAVLLGYCGTGYSGMQIQ--THGSKTIEGDLFEALAKAGAISPENATDHKKVDIQRA 189
Query: 137 SRTDKGVHSLAT 148
+RTD GVH+
Sbjct: 190 ARTDAGVHAAGN 201
>gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 1052
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 81/208 (38%), Gaps = 41/208 (19%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+S+ ++ K+ +AL+V Y+G DY G Q+ TIEG L AL K I +
Sbjct: 756 TSEIDFDKCYKRYIALKVAYLGWDYHGFAAQQITE--ETIEGHLIRALQKTCLINDIKNC 813
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKME---------IPPDAWKDDPYG---------- 167
N K +A S RTDKGV + +I L + IPP D+
Sbjct: 814 NYSK--YALSGRTDKGVSAFGQVISLYVRSNLTEGNDLIPPTVIDDEAIAKKKANLLKNK 871
Query: 168 -----IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTA 222
K +N LP I+V P F+ R R Y Y + +N A
Sbjct: 872 KTHEEFQFVKMLNGVLPPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEA 931
Query: 223 AEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ S+I GEH F N+ +
Sbjct: 932 GK--SYI-----------GEHDFSNFCK 946
>gi|429962506|gb|ELA42050.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 365
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV L +GY G Y GLQ D L TIE E+ L + I E N + QKI
Sbjct: 2 KRKVGLIIGYNGEGYHGLQYNND---LKTIEKEIIDILLRNECITEINSKDPQKIDLKSC 58
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTDKGVH+ ++ +K+ P ++ KR L + + ++ ++ + F
Sbjct: 59 SRTDKGVHASFNVVSVKIIQEPTLE-----LFEILKR--EFLDKGMILYKLIKLPKRFLG 111
Query: 197 RRECNLRKYSYLLPAEVI 214
+ R Y Y+LP V+
Sbjct: 112 HKCARSRIYKYVLPTYVL 129
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 16/120 (13%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK---HSRIVLPLAPSEVLF 439
Y+EI I G+SF+LHQIRKM+ AV R R+ + K + +P PS+ LF
Sbjct: 234 YIEIKIHGQSFLLHQIRKMISFAVLNCR--YARNNYQANFEKALSKEDVHIPKCPSQYLF 291
Query: 440 LRANSF----SVRTRPGVTRPEMQTMVESEEILKMVDEFYTSV----TLPEVSKFLDATK 491
L F + R+ G + E+ ES++ + ++ Y SV + E K+LDA +
Sbjct: 292 LNHIFFEDFNTKRSEQGAEKIEIN---ESDKEVFEKEKIYPSVLRLENIYEWFKYLDAVR 348
>gi|432095058|gb|ELK26447.1| tRNA pseudouridine synthase A, mitochondrial [Myotis davidii]
Length = 214
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 14/129 (10%)
Query: 131 IAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
+++ R +RTDKGV + ++ LK+ W D D+ +++N+HLP +I++ +
Sbjct: 1 MSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSHLPSHIRILGLKRV 50
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD----FNAILNEFEGEHPFH 246
F+ + C+ R Y Y+LP + E +D N +L ++G H FH
Sbjct: 51 TGGFNSKNRCDARTYVYMLPTFAFAHKDRDAQDETYRLSADTLRQVNRLLACYKGTHNFH 110
Query: 247 NYTERSKYR 255
N+T + R
Sbjct: 111 NFTSQKGPR 119
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM HQIRKMVG VA+ + P D+L S + +++ +P AP L
Sbjct: 140 GMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYAPEDVLERSWGE-AKVDVPKAPGLGLV 198
Query: 440 LRANSFSVRTRP 451
L RP
Sbjct: 199 LACLMLVRVCRP 210
>gi|220903970|ref|YP_002479282.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868269|gb|ACL48604.1| tRNA pseudouridine synthase A [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 259
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + YVGT Y G Q+Q T++G LE AL G +G S R
Sbjct: 2 RLKLLISYVGTGYSGWQIQEKPKPPPTVQGALEAALRTIAGKAVRVHG---------SGR 52
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +IP D G+D +NA LPR+I+V P+ F R+
Sbjct: 53 TDSGVHAHGQVA--HCDIP-----DTRAGLDWRHSLNAVLPRDIRVLDASPAAPDFHARK 105
Query: 199 ECNLRKYSY 207
+ + Y+Y
Sbjct: 106 DALRKTYAY 114
>gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi]
Length = 376
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + LR Y+G DY+G Q D S+ TIE L TAL K I N + R
Sbjct: 72 KRHILLRFFYLGWDYQGFAAQED--SIETIEHHLFTALQKVCLIESRETSN-----YNRC 124
Query: 137 SRTDKGVHSLATMICLKM--EIPP--DAWKDDPYG--IDLAKRVNAHLPRNIKVFSILPS 190
RTDKGV + +I + + +I P D +D +D +N LP I+ + +P
Sbjct: 125 GRTDKGVSAFHQVISIDVRSKIAPEDDQLSEDSLATELDYCGMLNRVLPEEIRCLAWMPM 184
Query: 191 QR-SFDPRRECNLRKYSYLLPAEVIGINSQLTAA 223
+ R +C R Y Y P + I++ A
Sbjct: 185 VNPGYSARFDCRSRTYRYFFPRGNLRIDAMQEAC 218
>gi|383863340|ref|XP_003707139.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Megachile
rotundata]
Length = 420
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+ Y+G D G +Q E++ +TIE + AL K+ I N + R
Sbjct: 71 KRHILLKFYYLGWDCNGFVVQ--ENTDNTIEQHIFAALIKSCCIESRETSN-----YHRC 123
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV S + +I L + ++ P+ + K +N LP NI+ + P
Sbjct: 124 GRTDKGVSSFSQVISLDIRSKLKPEDQNKLEDELPYCKILNRLLPSNIRCTAWCPVSDDV 183
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R +C R Y Y P + I++ A + GEH F N
Sbjct: 184 SARFDCKFRTYKYFFPRGNLNIDAMDKAVKY-------------IIGEHDFRN 223
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 80/185 (43%), Gaps = 36/185 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICL-------KMEIPPDA-WKDDPYGIDLAKRV------NAHLPRNI 182
RTDKGV + +I L K D KDD Y D AK + N LP +I
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFLKGRASEDCNVKDDVY--DAAKEIRYTHILNRVLPPDI 171
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P + SF R C R Y Y P A++D I N ++ G
Sbjct: 172 RVLAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--ILTMNHAAQKYVGT 218
Query: 243 HPFHN 247
H F N
Sbjct: 219 HDFRN 223
>gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae]
gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae]
Length = 492
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W ++ V L+V Y G DY+GL Q D S TIE L AL + I N
Sbjct: 92 WSNAHRRHVLLKVSYFGWDYQGLACQED--SNDTIESHLFRALTRTCLIESRATSN---- 145
Query: 132 AWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDDP---YGIDLAKRVNAHLPRNIKVFS 186
+ R RTDK V + +I L+ + PP++ D ID +N LP+NI+ +
Sbjct: 146 -YHRCGRTDKEVSAFCQVISIDLRSKHPPESQLDATSISSEIDYCGLLNRVLPKNIQCVA 204
Query: 187 ILPSQRS-FDPRRECNLRKYSYLLP 210
+P + + R +C R Y Y P
Sbjct: 205 WMPLRSPVYSARFDCVARTYRYYFP 229
>gi|157363557|ref|YP_001470324.1| tRNA pseudouridine synthase ACD [Thermotoga lettingae TMO]
gi|166991166|sp|A8F526.1|TRUA_THELT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157314161|gb|ABV33260.1| tRNA pseudouridine synthase A [Thermotoga lettingae TMO]
Length = 245
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ V Y GT++ G Q+Q+D + T++G E AL + Q++ +
Sbjct: 2 KRFMAIVSYDGTNFCGFQVQKD---VRTVQGMFEQALERILK---------QRVITIAAG 49
Query: 138 RTDKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ ++C ++I ++ K+ +NA+LP +I V ++ ++F
Sbjct: 50 RTDTGVHANGQIVCFDCYLDIDEESMKNA---------MNANLPDDIYVRKVVEVDKNFH 100
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN---------EFEGEHPFH 246
PR + R Y YL+ NSQ I ++ F LN FEGEH F
Sbjct: 101 PRFDAKRRIYHYLI------YNSQEPNLFIRNYAWWFPYKLNICKMREAAKFFEGEHDFR 154
Query: 247 NYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ + +R +T + + + RVE
Sbjct: 155 SFMKSGDHRENTVRTIYRVRVLQLRGGIILIRVE 188
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPP----------DAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + P D D I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHFPKGRDSEDFNLKDEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPCANLDIVTMNYAAQKYVGTHDF 222
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q + + T+EGEL AL G I N + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQPN---VETVEGELFKALRNLGIIESPKSAN-----YTCAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ A+ D + + + +N+ L I V++ SFD RR
Sbjct: 54 TDAGVHALEQVV---------AFDTDKLNLAIPRVINSELTPGIWVWAHAEVPLSFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ R Y Y++ + I+ A++ G H F N++ + +
Sbjct: 105 DAVSRHYRYVMSGKEYDISKIREASKF-------------LLGTHDFENFSRTNGEKSTV 151
Query: 259 HKTGRVSKR 267
R+ R
Sbjct: 152 RTIERIDAR 160
>gi|401828224|ref|XP_003888404.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
gi|392999676|gb|AFM99423.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
Length = 314
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 28/167 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y G Y GL Q + TI G LE AL KA G+ E K+ +A
Sbjct: 35 QRTVALKISYDGQGYSGLSPQNGK---ETIGGNLEYAL-KATGLGE-------KLVYA-- 81
Query: 137 SRTDKGVHSL---ATMICLKMEIPP--------DAWKDDPYGIDLAKRVNAHLPRNIKVF 185
RTD GV ++ A+ + + + P D +++ Y I L N HLP +I+V
Sbjct: 82 GRTDAGVSAINMIASCVVISRVLEPNRSYSITEDDYREYKYDIML----NNHLPSDIRVI 137
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
P +F+ R C R+Y Y E + IN AA + +F
Sbjct: 138 GWAPVPDTFNARFTCVQRQYRYYFHKEGLNINEMNEAASRIKRMENF 184
>gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta]
gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta]
Length = 497
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 19/170 (11%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W K+ V L++ Y G DY+G Q D S TIE L AL + I N
Sbjct: 92 WSSAHKRHVLLKITYFGWDYQGFACQED--SNDTIESNLFRALSRTCLIDSRANSN---- 145
Query: 132 AWARSSRTDKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
+ R RTDK V + +I + + ++ P A + ID +N LP+NI+
Sbjct: 146 -YHRCGRTDKEVSAFCQVISIDLRSKHSPEFQLDPTALSTE---IDYCGLLNRVLPKNIQ 201
Query: 184 VFSILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ +P + + R +C R Y Y P + I + A ++ +DF
Sbjct: 202 CVAWMPLRSPVYSARFDCVSRSYRYYFPKGDLDIGAMSQACDLLERHADF 251
>gi|448577055|ref|ZP_21642773.1| tRNA pseudouridine synthase A [Haloferax larsenii JCM 13917]
gi|445728179|gb|ELZ79786.1| tRNA pseudouridine synthase A [Haloferax larsenii JCM 13917]
Length = 278
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A RV Y G Y G Q Q D + T+E L A + GI +++ + +A S RTD
Sbjct: 3 AFRVAYDGRPYHGFQRQPD---VPTVEDTLLDAC-RTLGICDAD---AVPVGYAASGRTD 55
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA + E P W + +NA LP I+ ++ F R
Sbjct: 56 AGVSALAQTVAF--ECP--EWC-------TPRALNAELPGTIRAWAAADVPDDFHARHHP 104
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R+Y Y L A ++ L A D + + +E GEH FHN T
Sbjct: 105 SRREYVYDLHAPSDAVDDDLAATVFDDLAA---TVFDELCGEHDFHNLT 150
>gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 511
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 78/223 (34%), Gaps = 67/223 (30%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+AL+ Y G DY GL Q D+ L T+EG L AL A + +SN G L+ W R
Sbjct: 57 RRKIALKFSYAGWDYGGLAYQPDDTPLPTVEGVLFDALSTA-HLVDSNAG-LEGCGWERC 114
Query: 137 SRTDKGVHSLATMICL-------------------KMEIPP------------------- 158
RTD+GV ++ + + PP
Sbjct: 115 GRTDRGVSGARQIVSVWVRSALRKEELAEADIRPGPVAFPPNSRRAAMDDDDDLPERVDD 174
Query: 159 --------DAWKDDPYGI------DLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRK 204
D WK D D +N LP I+V + P +F R CN R
Sbjct: 175 EPVIVNGQDLWKPDTVEPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRH 234
Query: 205 YSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
Y Y + + I AA GEH F N
Sbjct: 235 YKYFFTPKGLDIVRMQEAA-------------GRLIGEHDFRN 264
>gi|448511902|ref|ZP_21616281.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|448519915|ref|ZP_21618122.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
gi|445694736|gb|ELZ46855.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 9100]
gi|445703479|gb|ELZ55409.1| tRNA pseudouridine synthase A [Halorubrum distributum JCM 10118]
Length = 305
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 74/175 (42%), Gaps = 21/175 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G Y G Q Q H+ ST+ L AL + G + R + +A + RT
Sbjct: 14 AFRVAYDGRGYAGFQRQ--PHA-STVADALLEALAEHGVVERGDGSTHATPAGYAAAGRT 70
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + E P W L R N HLP +++V++ + F
Sbjct: 71 DAGVSAVAQTVAF--EAP--TW--------LTPRAFNGHLPGSVRVWAAADVEGGFHATH 118
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEID-SHISD---FNAILNEFEGEHPFHNYT 249
+ R Y Y L A G S D H D F A L F+GEH FHN T
Sbjct: 119 DAVQRTYRYHLYAPESGSESGSDRTRRDPEHAVDDDRFRAALARFDGEHDFHNLT 173
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----PYGIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P D +D D AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFPKDRASEDCNLKDEVSDAAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IVAMNDAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 25/171 (14%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 66 QRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 118
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVN--------AH-----LPRN 181
RTDKGV + +I L + ++P D DP +L VN H LP +
Sbjct: 119 GRTDKGVSAFGQVISLNLRSQLPRDK---DPEDKNLKDTVNDSVEEICYTHILNRVLPPD 175
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
I+V + + SF R C R Y Y P + I + AA+ DF
Sbjct: 176 IRVLAWATVESSFSARFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHDF 226
>gi|110598437|ref|ZP_01386709.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031]
gi|110339971|gb|EAT58474.1| tRNA pseudouridine synthase A [Chlorobium ferrooxidans DSM 13031]
Length = 244
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K + + V Y GT Y G Q Q + T++GE+E+AL G I + +KI+ A +
Sbjct: 2 KNIRITVEYDGTPYSGWQRQ-NRKGCVTVQGEIESAL---GMILQ------EKISLAAAG 51
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ A + P D + + +NA LP I++ L + F R
Sbjct: 52 RTDKGVHAKAQIANFSTASPMDLSR-------MVHSLNALLPDTIRITDPLEMPKEFHSR 104
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDS-HISDFNAILNEFEGEHPFHNYTERSK 253
R Y Y L AE I + + + ++ + G H F ++ +
Sbjct: 105 HSARERHYRYFLIAEPSAIYGRFSGCSFGTPDLAVMQQVAGSVRGVHDFSAFSREDR 161
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 26/172 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VA ++ YVG +Y GL+ Q ++ +TIE L AL + I + N + R+ R
Sbjct: 50 RVAFKLAYVGINYHGLEQQINQQ--NTIENHLFKALQRVRMIDNRDDCN-----YTRAGR 102
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TDKGV ++ ++ L + K D + RV LP +I++ F+ R
Sbjct: 103 TDKGVSAIGNVVALNVR---KIGKSDKLYAQILNRV---LPEDIQILDECIVDEKFNARY 156
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+C R Y Y ++D +I + F GEH F N+ +
Sbjct: 157 DCIKRVYKYYF-------------YKMDYNIELMTEAMLLFIGEHDFRNFCK 195
>gi|427798085|gb|JAA64494.1| Putative pseudouridylate synthase, partial [Rhipicephalus
pulchellus]
Length = 439
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 37/237 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++ VALR+ Y+G DY G +Q D + T+E L AL + + + + + R
Sbjct: 69 KRRHVALRLLYLGWDYSGYVLQED--TGRTVEAALFEALERTRLLEDRTDAH-----YHR 121
Query: 136 SSRTDKGVHSLATMICLKMEI---------------PPDAWKDDPYGIDLAKRVNAHLPR 180
RTDKGV + + +I + + P + +D K +N LP
Sbjct: 122 CGRTDKGVSAFSQVISIDLRTNLSEGVGVFAQEGYQPNSSEASRTEELDYVKILNGVLPP 181
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
I+V + P ++F R +C R Y Y P + + A + DF L + +
Sbjct: 182 EIRVLAWAPVDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRN-LCKMD 240
Query: 241 GEHPFHNYTER----SKYRRKPHKTGRVSKRA--KASKDAVFSRVEESEGEEDGFSK 291
+ NY R S +R P K+ V+ A +S A F + DGF++
Sbjct: 241 VANGVTNYMRRILRTSIFRWPPSKSPLVASPAGEDSSHTATFHK--------DGFTE 289
>gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818]
Length = 460
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 97/241 (40%), Gaps = 49/241 (20%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+K+AL+V Y+G Y GL +Q + TIE L AL K+ + + ++ ++R
Sbjct: 60 KRKIALKVAYLGEKYHGLAIQIS--APDTIEAHLFEALEKSKLVED-----IKTADYSRC 112
Query: 137 SRTDKGVHSLATMICL--------------KMEIPPDAWKDDPY--GIDLAKRVNAHLPR 180
RTDKGV + ++ L K + P K +D K +N LP
Sbjct: 113 GRTDKGVSAYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDELDYTKILNGLLPP 172
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
I+V F R CN R Y Y A +D+ + A +
Sbjct: 173 EIRVVDWGAVDTDFSARFSCNARHYKYF-----------FHRANMDT--AAMQAACDHLV 219
Query: 241 GEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEED 300
GEH F N+ K G V+ + K+A RV + E G + V SDG+ D
Sbjct: 220 GEHDFRNFC-------KADVAGGVTNFVRTIKEA---RVCPA---EIGDASVHSSDGDFD 266
Query: 301 L 301
L
Sbjct: 267 L 267
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 81/210 (38%), Gaps = 49/210 (23%)
Query: 62 RPTPNSSDDKWEPVRKKKVALRVGYVGTD--------------------YRGLQMQRDE- 100
R P D W + + ++ YVGT Y G+ Q E
Sbjct: 19 RKAPRGID--WSTAKTGRFVMKFAYVGTRQASFPSTTMALKVCVEAVLRYAGVAWQNQEA 76
Query: 101 HSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDA 160
++T+E EL L K I ++R RTDKGVH+ L++ + PD
Sbjct: 77 FGVNTVENELFKGLVKTCLIESR-----MSCDFSRCGRTDKGVHARGNYATLRLRLKPDG 131
Query: 161 WKDDPYGIDLAKRVNAHLPRNIKVFSI--LPSQRSFDPRRECNLRKYSYLLPAEVIGINS 218
+ PY I + RV LP +I+V I +PS FD R C R Y Y P+ + +
Sbjct: 132 -TEFPY-IQMINRV---LPDDIRVLRICSVPSD-DFDARFSCKSRTYKYFFPSTGLDLEV 185
Query: 219 QLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
AA+ G+H + N+
Sbjct: 186 MAEAAQ-------------RLVGQHDYRNF 202
>gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum]
Length = 365
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 34/173 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ V L+ Y+G DY+G Q D +++TIE + AL K I + N + R
Sbjct: 38 RHVLLKFLYLGWDYQGYVTQED--TVNTIEHHVFNALIKTCLIENRSSAN-----YHRCG 90
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDK + S D I+ K +N LP NI+ + P + +F R
Sbjct: 91 RTDKDLRSNGD--------------DFESEINYCKILNRVLPENIQFVAWCPVESAFSAR 136
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+C R Y Y P + I++ AA N G H F N+ +
Sbjct: 137 FDCKNRTYKYFFPKSNLDIDAMKIAA-------------NYLVGTHDFRNFCK 176
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ +AL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHIALKMAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKR----------VNAHLPRNIKV 184
RTDKGV + +I L + + P D +D D A +N LP +I++
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRDRDSEDFNLKDEASSAAKEIRYTHILNRVLPPDIRI 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------HADLD--IETMNYAAQKYVGTHD 220
Query: 245 FHNY 248
F N+
Sbjct: 221 FRNF 224
>gi|333375438|ref|ZP_08467246.1| tRNA pseudouridine synthase A [Kingella kingae ATCC 23330]
gi|332970287|gb|EGK09279.1| tRNA pseudouridine synthase A [Kingella kingae ATCC 23330]
Length = 265
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 25/201 (12%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+ ++ AL V Y G+ + G Q Q D + T++ LE AL G + IA
Sbjct: 5 QTQRFALTVSYDGSQFFGWQKQAD--GVVTVQAALEHALSCIAG---------EPIATIA 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ ++ + P AW + VNAHLP + V + + +
Sbjct: 54 AGRTDTGVHATGQIVHFDTQAHRPLSAW---------VRGVNAHLPDGVAVLAAQAVEPA 104
Query: 194 FDPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F R + R+Y YLL P + + + A +N GEH F ++
Sbjct: 105 FHARFDATGRRYRYLLESAPVRSPLLYRRAGWTHYALNTDPMQAAMNLLLGEHDFSSFRA 164
Query: 251 RSKYRRKPHKTGRVSKRAKAS 271
+ P KT ++ +A
Sbjct: 165 AQCQAKSPIKTMYAAQLQRAG 185
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 36/185 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKD-DPYGIDLAKRVN--------AH-----LPRNI 182
RTDKGV + +I L ++ KD D I+L VN H LP +I
Sbjct: 114 GRTDKGVSAFGQVISL--DLRSHFLKDKDSEDINLKDEVNDATKEIRYTHILNRVLPPDI 171
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P + SF R C R Y Y P A++D I N ++ G
Sbjct: 172 RVLAWAPVEPSFSARFSCLERTYRYFFP-----------HADLD--IVTMNYAAQKYVGT 218
Query: 243 HPFHN 247
H F N
Sbjct: 219 HDFRN 223
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALRIAYLGWGYQGFASQ--ENTTNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIP----------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P D D I +N LP +I++
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPMAKDSESCNSKDEANDVAEEIRYTHILNRVLPPDIRI 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P F R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVDPGFSARFSCLERTYHYFFP-----------RADLD--IVTMNCAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPP----------DAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + IP + D I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDF 222
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPP----------DAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + IP + D I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDF 222
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPP----------DAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + IP + D I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDF 222
>gi|387592744|gb|EIJ87768.1| hypothetical protein NEQG_01840 [Nematocida parisii ERTm3]
gi|387595370|gb|EIJ92994.1| hypothetical protein NEPG_01949 [Nematocida parisii ERTm1]
Length = 326
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 43/216 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN------------- 124
+ V L++ Y G Y G Q L T+E L +L K + +N
Sbjct: 6 RNVLLKLSYNGQQYHGFAYQP---GLPTVEHHLFLSLIKNKFVEINNGLPIQPSTFVWPK 62
Query: 125 --YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
++ + + + RTD GV + A I + +P + KD PY I +N HLP +I
Sbjct: 63 EILASIALMKYYKCGRTDAGVSAAAQFI--SIHLPSNTEKDYPYDI----MINQHLPNDI 116
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEF 239
+V + + F R C R+Y Y PA ++ I + A++ +
Sbjct: 117 RVLGWMFVDKEFSARFTCISREYEYYFSKRPASILNIETMKDASK-------------KL 163
Query: 240 EGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAV 275
G H F ++ K + K R+ K+ K S D V
Sbjct: 164 LGTHWFGRLCKQEK---ESSKQKRLEKKQKLSPDEV 196
>gi|403382898|ref|ZP_10924955.1| tRNA pseudouridine synthase A [Paenibacillus sp. JC66]
Length = 259
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ + L V Y GT Y G Q+Q +T++GELE A+F G Q + S
Sbjct: 7 RNIKLTVSYDGTQYSGFQIQPQA---NTVQGELERAVFHLTG---------QSVKLTSSG 54
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ ++ ++ IP D W +N+ LP++I V + F
Sbjct: 55 RTDAGVHARCQVVNFEVNSSIPIDRW---------CLALNSRLPKDIVVHTAEEVPMEFH 105
Query: 196 PRRECNLRKYSYLLP----AEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
RR + Y Y + A V+ +S+L S +S L + EG H F + R
Sbjct: 106 ARRSAVSKTYRYSIQRSKWANVMYRDSRLHHPGSLS-LSAMEKALKQLEGTHDFTTFCSR 164
>gi|448315519|ref|ZP_21505167.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
gi|445611692|gb|ELY65439.1| tRNA pseudouridine synthase A [Natronococcus jeotgali DSM 18795]
Length = 289
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y G+ YRG Q Q + + T+E +L AL ++ G+ E G + +A + RTD
Sbjct: 5 AYRIAYDGSGYRGFQRQ-PQPDVPTVEDDLFDAL-RSHGVLEP--GADKPTGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRRE 199
GV +LA + + PD W LA R N LP +++ +++ + F
Sbjct: 61 AGVSALAQTVAFEA---PD-W--------LAPRAFNGELPADVRAWAVADAPADFHATHH 108
Query: 200 CNLRKYSYLLPAEVIGINSQL---TAAEIDSHISD--FNAILNEFEGEHPFHNYT 249
+ R+Y+Y L A ++ T + + ++D F A + G H FHN T
Sbjct: 109 ASRREYAYHLYAPPARRSAASAAETGSRTATRVADDRFRAACDALSGSHDFHNLT 163
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 23/128 (17%)
Query: 84 VGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGV 143
V Y GT Y G Q R L TIEGELE A+ K G +++ + RTD GV
Sbjct: 8 VEYEGTRYSGFQ--RQPRGL-TIEGELEAAICKLTG---------ERVKVLAAGRTDAGV 55
Query: 144 HSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
H+L +I E IPP+ + A +N+ LP +I+V ++ F PR +
Sbjct: 56 HALGQVIAFDTESPIPPERF---------APALNSVLPSDIRVLKSEKAKEGFHPRYQAR 106
Query: 202 LRKYSYLL 209
+ Y YL+
Sbjct: 107 AKAYRYLI 114
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFDALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + +D D+AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVNDVAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IITMNYAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 24/178 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + + N + R
Sbjct: 65 RRHVALRIAYLGWGYQGFASQ--ENTPNTIEEKLFEALKKTRLVDDRQTSN-----YHRC 117
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYG-------IDLAKRVNAHLPRNIKVFSIL 188
RTDKGV + +I L + P+ + + +G + +N LP +I+V +
Sbjct: 118 GRTDKGVSAFGQVISLDLRSSLPEGQQLNGHGGEGQQEELRYTHILNRVLPPDIRVLAWA 177
Query: 189 PSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF---------NAILN 237
P F R C R Y Y P + + TAA+ DF N +LN
Sbjct: 178 PVGPEFSARFSCLSRTYRYFFPCAQLDVALMDTAAQRYVGTHDFRNLCKMDVANGVLN 235
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 87/227 (38%), Gaps = 43/227 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VA + Y+G D+ G Q E S TIE + A K I + Q R
Sbjct: 3 KRHVAFKFTYLGWDFNGFADQ--ETSSKTIEAAVFDAFVKTKLIESRDTSKYQ-----RC 55
Query: 137 SRTDKGVHSLATMICLKME----------IPPDA---WKDDPYGIDLAKRVNAHLPRNIK 183
RTDKGV + +I L++ +P D K+ P+ +K +N LP I+
Sbjct: 56 GRTDKGVSAFTQVISLEVRTNLLEGPGVRVPEDNASRGKEMPF----SKMLNGCLPPEIR 111
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
V + P F R C R Y Y P + ++ AA + G H
Sbjct: 112 VIAWCPVDEDFSARFSCQSRTYKYFFPRAQLNLDVMRAAAA-------------KLIGLH 158
Query: 244 PFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFS 290
F N+ + + G + + S+ + E E+DG+S
Sbjct: 159 DFRNFCKMDV------RNGVIEYMRRISEIHIEPFNSEYAAEDDGYS 199
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTAN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD-------PYGIDLAKRVNAHLPRNIKVFSI 187
RTDKGV + +I L + + P +D I +N LP +I++ +
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAW 173
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
P + SF R C R Y Y P A++D D+ A ++ G H F N
Sbjct: 174 APVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHDFRN 220
>gi|374988975|ref|YP_004964470.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
Length = 292
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GTD+ G QR ++ T++GELE+AL +++ + + R
Sbjct: 11 RVRLNLSYDGTDFSGWAKQRGRDTVRTVQGELESALKVVMRMQDP-------VELTVAGR 63
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P W + + L +R+ LP +I+V+S+ + F+ R
Sbjct: 64 TDAGVHARGQVA--HVDLPEPIWAE--HHEKLLRRLAGRLPHDIRVWSVGEAPPGFNARF 119
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTER 251
R+Y Y + G++ L + + N + GEH F Y ++
Sbjct: 120 SAIWRRYVYRVVDHPGGVDPLLRGHVLWHDWPLDVDAMNEAAQKLLGEHDFAAYCKK 176
>gi|298370079|ref|ZP_06981395.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281539|gb|EFI23028.1| tRNA pseudouridine synthase A [Neisseria sp. oral taxon 014 str.
F0314]
Length = 275
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 22/135 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ L + Y G+ + G Q Q + + T++ ELE+A+ K G + I+ +
Sbjct: 12 KQRWILVLSYDGSRFFGWQKQAE--GIPTVQAELESAISKIAG---------ENISVTVA 60
Query: 137 SRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD GVH++A ++ + PP AW + VNA+LP + V +Q F
Sbjct: 61 GRTDTGVHAVAQVVHFDTAVFRPPQAW---------VRGVNAYLPDGVAVLCAQTTQPHF 111
Query: 195 DPRRECNLRKYSYLL 209
R + R+Y YLL
Sbjct: 112 HARFDAFGRRYRYLL 126
>gi|197302933|ref|ZP_03167984.1| hypothetical protein RUMLAC_01661 [Ruminococcus lactaris ATCC
29176]
gi|197298014|gb|EDY32563.1| tRNA pseudouridine synthase A [Ruminococcus lactaris ATCC 29176]
Length = 297
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 32/191 (16%)
Query: 66 NSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY 125
N +K + R K++ L V Y GTDY G Q+Q ++++TIEGEL T L + G
Sbjct: 15 NQIIEKEDRKRMKRIRLTVAYDGTDYCGWQVQ---NNVATIEGELNTVLTQLTG------ 65
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
Q + +SRTD GVH+ + E IPP+ + VNA LP +I
Sbjct: 66 ---QTVKVIGASRTDAGVHARGNVAVFDTESSIPPERF---------LYAVNALLPEDIV 113
Query: 184 VFSILPSQRSFDPRRECNLRK-YSYL-----LPAEVIGINSQLTAAEIDSHISDFNAILN 237
V + P R CN K Y Y LP + ++ + +D +
Sbjct: 114 VVDSCEVAADWHP-RHCNTEKTYEYRVLNQKLPDPMRRRDTYFVSFPLD--LERMRQAAG 170
Query: 238 EFEGEHPFHNY 248
EGEH F ++
Sbjct: 171 YLEGEHDFKSF 181
>gi|381400976|ref|ZP_09925894.1| tRNA pseudouridine synthase A [Kingella kingae PYKK081]
gi|380833901|gb|EIC13751.1| tRNA pseudouridine synthase A [Kingella kingae PYKK081]
Length = 265
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 25/201 (12%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+ ++ AL V Y G+ + G Q Q D + T++ LE AL G + IA
Sbjct: 5 QTQRFALTVSYDGSQFFGWQKQAD--GVVTVQAALEHALSCIAG---------EPIATIA 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ ++ + P AW + VNAHLP + V + + +
Sbjct: 54 AGRTDTGVHATGQIVHFDTQAHRPLRAW---------VRGVNAHLPDGVAVLAAQAVEPA 104
Query: 194 FDPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F R + R+Y YLL P + + + A +N GEH F ++
Sbjct: 105 FHARFDATGRRYRYLLESAPVRSPLLYRRAGWTHYALNTDPMQAAMNLLLGEHDFSSFRA 164
Query: 251 RSKYRRKPHKTGRVSKRAKAS 271
+ P KT ++ +A
Sbjct: 165 AQCQAKSPIKTMYAAQLQRAG 185
>gi|356574565|ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VAL+V Y G + G S + +E +E+ LFKA G+ ++ ++R
Sbjct: 81 KRYVALKVTYFGKRFYGFA------SEAQMEPTVESELFKAFEKTRLLVGDKKESQYSRC 134
Query: 137 SRTDKGVHSLATMIC--LKMEIPPDAWKDDPYG----------IDLAKRVNAHLPRNIKV 184
RTDKGV S+ +I L+ + A + G ID +N LP +I++
Sbjct: 135 GRTDKGVSSVGQVIALFLRSNLKISATNNGNSGVVLDEQHEGEIDYVGVLNRVLPNDIRI 194
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
P+ F R C R+Y Y E N + A E+ N+ GEH
Sbjct: 195 MGWCPAPVDFHARFSCLSREYKYFFWKE----NLNIPAIEVAG---------NKLVGEHD 241
Query: 245 FHNYTERS-----KYRR 256
F N+ + YRR
Sbjct: 242 FRNFCKMDAANVHNYRR 258
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRESEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+K+ALR Y GT Y GLQ +TIE + A+ + + + G IA
Sbjct: 63 RKRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKVV--DDIGTADYIA--- 117
Query: 136 SSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKR-----VNAHLPRNIKVFSIL 188
RTDKGVH++ +I L + + D ++ + + +R +N LP +I + S
Sbjct: 118 GGRTDKGVHAVNNVISLFVNSRLSEDEINEN---VTVGERNFVAIINRQLPDDIWITSWA 174
Query: 189 PSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
P F R C R Y+Y+ + G++ +L E S++ GEH F N+
Sbjct: 175 PISFDFSARFSCKSRHYNYIFDSS--GLDVELM-KEAASYLI----------GEHDFRNF 221
Query: 249 TE 250
++
Sbjct: 222 SQ 223
>gi|448347582|ref|ZP_21536453.1| tRNA pseudouridine synthase A [Natrinema altunense JCM 12890]
gi|445630284|gb|ELY83550.1| tRNA pseudouridine synthase A [Natrinema altunense JCM 12890]
Length = 287
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GTDY G Q Q + + T+E + AL +A + + + + +A + RTD
Sbjct: 5 AFRIAYDGTDYHGFQRQP-QPDIPTVEDAVFDAL-RALAVLDPDAD--KPAGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA I L+ PD W + +NA LP +++ ++ + F
Sbjct: 61 AGVSALAQTIALEA---PD-WL-------TPRALNAELPADVRAWAAADAPDGFHATHHA 109
Query: 201 NLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y+Y L PA+ +S A F A + G H HN T
Sbjct: 110 SRRAYTYHLYAPPADAATPDSDADATAPAVDDERFRAACDALSGTHDIHNLT 161
>gi|303328364|ref|ZP_07358802.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3]
gi|302861694|gb|EFL84630.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 3_1_syn3]
Length = 226
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y+GT Y G Q+Q TI+GELE AL G +G S R
Sbjct: 2 RLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHG---------SGR 52
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + ++P D G+ + +NA LP I++ + P+ F R+
Sbjct: 53 TDAGVHAHGQVA--HCDVP-----DAKAGLRWQRSLNALLPPEIRILAAEPAAADFHARK 105
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI---LNEFEGEHPF 245
+ + Y Y E + QL + D A+ L GEH F
Sbjct: 106 DALRKTYVYQFWQERAFVPPQLAPFFWNCGPLDVEAMRAALPHLLGEHDF 155
>gi|340378747|ref|XP_003387889.1| PREDICTED: tRNA pseudouridine synthase 3-like [Amphimedon
queenslandica]
Length = 434
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 77/189 (40%), Gaps = 35/189 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VA +V Y+G DY GL +Q + + TIE +L AL K I + + N ++R
Sbjct: 54 KRHVAFKVLYLGWDYSGLALQ--DTTTETIEAKLFDALLKTKLIEDPSQSN-----YSRC 106
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAWK------DDPYGIDLAKRVNAHLPRN 181
RTDKGV + +I L + I P+ K D + +N LP++
Sbjct: 107 GRTDKGVSAFGQVITLDVRTALLEGEGVIVPEGSKAIERKGDKIIELPYLNMLNRVLPKD 166
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEG 241
IK+ + P F R R Y Y P + I A +F G
Sbjct: 167 IKLSAWAPVPPQFSARFNTMHRIYKYYFPMGSMDIELMREGAR-------------KFIG 213
Query: 242 EHPFHNYTE 250
H F N+ +
Sbjct: 214 HHDFRNFCK 222
>gi|298530329|ref|ZP_07017731.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509703|gb|EFI33607.1| tRNA pseudouridine synthase A [Desulfonatronospira thiodismutans
ASO3-1]
Length = 247
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GT Y G Q+Q+D TI+GELE AL + +G S R
Sbjct: 4 RVRLTLAYDGTGYNGWQIQKDG---LTIQGELEKALSRICSASIRVHG---------SGR 51
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L + PP + + P+ + +NA LP I+V + R F R
Sbjct: 52 TDAGVHALGQVAHFD---PPPKFLNVPWN----RALNAVLPPGIRVLDFARTDRKFHARF 104
Query: 199 ECNLRKYSYLL 209
++YSY L
Sbjct: 105 SARAKQYSYTL 115
>gi|345893728|ref|ZP_08844521.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
gi|345045982|gb|EGW49880.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
Length = 257
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 23/172 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y+GT Y G Q+Q TI+GELE AL G +G S R
Sbjct: 2 RLKLLLAYLGTGYSGWQIQEKPSPPPTIQGELEAALRVLAGAPVRVHG---------SGR 52
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + ++P D G+ + +NA LP I++ + P+ F R+
Sbjct: 53 TDAGVHAHGQVA--HCDVP-----DAKAGLRWQRSLNALLPPEIRILAAEPAAADFHARK 105
Query: 199 ECNLRKYSYLLPAEVIGINSQLT-----AAEIDSHISDFNAILNEFEGEHPF 245
+ + Y Y E + QL +D + A L GEH F
Sbjct: 106 DALRKTYVYQFWQERAFVPPQLAPFFWNCGPLD--VEAMRAALPHLLGEHDF 155
>gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
Length = 497
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 47 SSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTI 106
++++ ++P + T + W ++ V L++ Y G DY+G Q D S TI
Sbjct: 71 TAATATAPKETTTHSGKVKKQRKFDWSIAHQRHVLLKLTYFGWDYQGFACQED--SNDTI 128
Query: 107 EGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDD 164
E L AL + I N + R RTDK V + +I L+ + PD + +
Sbjct: 129 ESHLFRALTRTCLIESRATSN-----YHRCGRTDKEVSAFCQVISIDLRSKHTPDT-QLE 182
Query: 165 PYG----IDLAKRVNAHLPRNIKVFSILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQ 219
P ID +N LP+NI+ + +P + + R +C R Y Y P + I +
Sbjct: 183 PASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCTSRSYRYYFPKGDLDIEAM 242
Query: 220 LTAAEIDSHISDF 232
A ++ SDF
Sbjct: 243 REACKLLVGHSDF 255
>gi|153005130|ref|YP_001379455.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
gi|152028703|gb|ABS26471.1| tRNA-pseudouridine synthase I [Anaeromyxobacter sp. Fw109-5]
Length = 265
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ ALRV Y G +RG Q Q L T++ LE AL AG +R + A +
Sbjct: 3 RRFYALRVAYEGGRFRGFQRQ---PGLPTVQDALEGALLAAG-VRAT---------LAVA 49
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTD GVH+L ++ DP + A +NA LP + V +L SF
Sbjct: 50 ARTDAGVHALDQVVSFSARA-----ALDPAALRGA--LNAALPEGVAVLEVLRVAPSFHA 102
Query: 197 RRECNLRKYSYLLPA 211
R R+Y YL+ A
Sbjct: 103 RNTARARRYVYLVGA 117
>gi|444317471|ref|XP_004179393.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
gi|387512434|emb|CCH59874.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
Length = 435
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+AL+ Y+G +Y GL +Q+D L T+EG + A+ K + + Q ++R RT
Sbjct: 86 IALKFAYLGWNYNGLAIQKDYTPLPTVEGTILEAMNKCKLVPSM---SPQDYNFSRCGRT 142
Query: 140 DKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
DKGV +++ +I L + ++ P D+ + +D+ +V LP +I++ ++ L
Sbjct: 143 DKGVSAMSQVISLNVRSNLSNEEQLNPLKDSDEIHYVDILNQV---LPADIRISAVCLRP 199
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F+ R C + + + I AA++ ++GEH F N+ +
Sbjct: 200 PSGFNARFSCYKSSLQVFIRKKNLDIEKMKIAAKL-------------YQGEHDFRNFCK 246
>gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
Length = 261
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 19/166 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A V Y+GTD+ G Q Q + T+EGE A G + + + + S R
Sbjct: 2 RIAFLVSYIGTDFYGSQQQ---PGIRTVEGEFIGACIDLG-----LFSDWRDARFQFSGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + + + P A +N LP +I+ F+PR
Sbjct: 54 TDAGVHARSQICAFDTDYPERA----------VSAINRKLPGDIRCRGWAGVPEGFNPRF 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
E + R Y Y P + AAE + DF+ EG++P
Sbjct: 104 EVSERIYRYFFPDGNLDWGKMSLAAEYLPGVHDFSR-FARVEGKNP 148
>gi|254467822|ref|ZP_05081228.1| tRNA pseudouridine synthase A [beta proteobacterium KB13]
gi|207086632|gb|EDZ63915.1| tRNA pseudouridine synthase A [beta proteobacterium KB13]
Length = 258
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 30/187 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A V Y+GT+Y G Q+Q + L+TI+ ++ AL K + S R
Sbjct: 2 RIAAIVEYLGTNYAGFQIQPN---LNTIQLCIQKALSKIAN---------HDVKIEASGR 49
Query: 139 TDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+L + E P ++WK + N+ LP++I + + ++F
Sbjct: 50 TDAGVHALGQVFHFDTESQRPLNSWK---------RGANSFLPQDISIKWVSEVDKNFHA 100
Query: 197 RRECNLRKYSYLL-----PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R R+Y YLL P+ + + EI+ + D +L EF G+H F ++
Sbjct: 101 RFNVMEREYQYLLHCNDTPSAIWHQKAGHYGYEINFKLLD--KVLKEFIGKHDFTSFRSS 158
Query: 252 SKYRRKP 258
+KP
Sbjct: 159 ECQSKKP 165
>gi|338730830|ref|YP_004660222.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
gi|335365181|gb|AEH51126.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
Length = 260
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 29/137 (21%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL---FKAGGIRESNYGNLQKIAWA 134
KK A + Y G ++ G Q+Q+D + T++G +E AL FK KI+
Sbjct: 2 KKFAAVISYDGNNFFGFQLQKD---VRTVQGVIEQALERIFKT------------KISVV 46
Query: 135 RSSRTDKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQR 192
+ RTD GVH++ +I +IPP+ K+ +NA+LP ++ V ++ +
Sbjct: 47 CAGRTDTGVHAVGQVIAFDCPYDIPPENMKNA---------LNANLPDDVYVRKVIEVPK 97
Query: 193 SFDPRRECNLRKYSYLL 209
F+PR R Y Y +
Sbjct: 98 DFNPRFCATRRIYHYFI 114
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q S+ T+E EL AL I N + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQ---PSVETVEKELFKALRNLRIIESPKSAN-----YICAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L +I + P + + + +N+ LP I V++ FD RR
Sbjct: 54 TDAGVHALGQVIAFDTDRP---------NLAIPRIINSGLPPTIWVWAHAEVPYDFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R Y Y++ E I+ A+++ DF
Sbjct: 105 HAVSRHYRYVISGEGYDISKMREASKLLLGTHDF 138
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDLNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIP------------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + D D I +N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IVTMNYAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
Length = 248
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 32/184 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K+ + Y+GT Y GL Q DE +T+EG L AL A + + + R R
Sbjct: 12 KLLMDFSYIGTGYHGLAYQSDE--PNTVEGHLFRALSLANVASD-----VLNNGYERCGR 64
Query: 139 TDKGVHSLATMICLKME----------IPPDAWKDDP-YGID-LAKRVNAHLPRNIKVFS 186
TD+ VH+L + + PD P Y I+ K +N HLPR I+V
Sbjct: 65 TDRDVHALHNYASFFPDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPRGIRVNW 124
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
+ F RR C R Y Y QL + ++ S I D F G+H F+
Sbjct: 125 VKHVPDDFSSRRNCTFRVYKYFF---------QLGSMDL-SLIQD---ACRHFLGQHNFN 171
Query: 247 NYTE 250
+ +
Sbjct: 172 QFCK 175
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIP------------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + D D I +N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFLKGRASEDFHVKDEVSDAAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IVTMNYAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis]
gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis]
Length = 421
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 47 SSSSKSSPSVSHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTI 106
++++ ++P + T + W ++ V L++ Y G DY+G Q D S TI
Sbjct: 71 TAATATAPKETTTHSGKVKKQRKFDWSIAHQRHVLLKLTYFGWDYQGFACQED--SNDTI 128
Query: 107 EGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMIC--LKMEIPPDAWKDD 164
E L AL + I N + R RTDK V + +I L+ + PD + +
Sbjct: 129 ESHLFRALTRTCLIESRATSN-----YHRCGRTDKEVSAFCQVISIDLRSKHTPDT-QLE 182
Query: 165 PYG----IDLAKRVNAHLPRNIKVFSILPSQRS-FDPRRECNLRKYSYLLPAEVIGINSQ 219
P ID +N LP+NI+ + +P + + R +C R Y Y P + I +
Sbjct: 183 PASLSSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCTSRSYRYYFPKGDLDIEAM 242
Query: 220 LTAAEIDSHISDF 232
A ++ SDF
Sbjct: 243 REACKLLVGHSDF 255
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 34/217 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ +A + Y+G Y GL Q ++ L T+E + AL KA I N +R
Sbjct: 6 QRYIAFKFAYLGWYYNGLVTQGNKTQLPTVEETIFFALKKAKLIDHERNCNF-----SRC 60
Query: 137 SRTDKGVHSLATMICLKM-------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF---S 186
RTDKGV ++ ++ L + E + W + Y ID+ +N LP+ I++ S
Sbjct: 61 GRTDKGVTAIGQVMALNVRSNKPFNEDSEEKWSEIKY-IDI---LNKLLPKTIRILAWCS 116
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
LPS F R C R Y YL + N QL ++ S F G+H F
Sbjct: 117 DLPS--DFSARFSCQKRHYKYLFFKD--SPNVQLNIEKMSKAAS-------YFIGKHDFR 165
Query: 247 NYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESE 283
N+ + ++ + T R+ R++ +K ++ EE++
Sbjct: 166 NFCKLDTSKQITNFT-RIITRSEINK---YNTAEEND 198
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 34/188 (18%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHS-LSTIEGELETALFKAGGIRESN--YGNLQKIAWARS 136
+AL+ Y+G Y GL+ + L TIE E+ AL K RE+ Y N ++++
Sbjct: 109 IALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKT---RETKPYYINWDGCEYSKA 165
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP-SQRSFD 195
RTD+GV + +I +++ + PY +N LP +I+V + P FD
Sbjct: 166 GRTDRGVSAFGQVIGIRVR------NELPY----VSMLNKVLPEDIRVLAWCPRPPEGFD 215
Query: 196 PRRECNLRKYSY---------------LLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
R C R Y Y +P + G +L +D I FE
Sbjct: 216 ARFSCGERHYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLD--IEAMRKAAKYFE 273
Query: 241 GEHPFHNY 248
G H F N+
Sbjct: 274 GTHDFRNF 281
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|383786162|ref|YP_005470731.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
gi|383109009|gb|AFG34612.1| pseudouridylate synthase I [Fervidobacterium pennivorans DSM 9078]
Length = 246
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VA+ Y GTD+ G Q Q D + T++ +LE AL + + Y +
Sbjct: 2 RRVAIEFAYDGTDFFGYQRQTD---VRTVQEDLEKALERIFKVPIQTYA---------AG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+ + + P D ++ D+ +NA+LP++I V + + +F+PR
Sbjct: 50 RTDTGVHANGQVAAF--DCPNDKLTEN----DIRNALNANLPKDIYVKKVWFASENFNPR 103
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSH---------ISDFNAILNEFEGEHPFHNY 248
E R Y Y + +NS++ + + I+ A G H F +
Sbjct: 104 YEAKRRIYHYYI------LNSKMNDIFLRRYAWWFPYELDIARMRAGAEYLIGTHDFTAF 157
Query: 249 TERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
+++ + + +T + K K+ + RVE
Sbjct: 158 SKKGEEDIRTERTITAIRIVKLKKNLILVRVE 189
>gi|448493615|ref|ZP_21609127.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
gi|445690170|gb|ELZ42390.1| tRNA pseudouridine synthase A [Halorubrum californiensis DSM 19288]
Length = 316
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H T+ L AL + G + R + +A + RT
Sbjct: 14 AFRVAYDGREYAGFQRQPHAH---TVADALLEALAEHGVVERGDGSTHATPPGYAAAGRT 70
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + E PP W L R N HLP +++V++ + F
Sbjct: 71 DAGVSAVAQTVAF--ETPP--W--------LTPRAFNGHLPGSVRVWAAADVEGGFHATH 118
Query: 199 ECNLRKYSYLLPAEVIGIN------------SQLTAAEIDSHISD---FNAILNEFEGEH 243
+ R Y Y L A + + TA H D A L +F+GEH
Sbjct: 119 DAVRRTYRYHLYAPAADGDGADEAPDAGRDRTAETARRDPEHAVDDERLRAALAQFDGEH 178
Query: 244 PFHNYT 249
FHN T
Sbjct: 179 DFHNLT 184
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 71/171 (41%), Gaps = 30/171 (17%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H+ T+EG L AL K G + R + +A + RT
Sbjct: 3 AFRVAYDGREYAGFQRQ--PHA-RTVEGTLLRALAKHGILDRGEGPTHATPPGYAAAGRT 59
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV +LA + E PP W L R N LP +I+V++ + F
Sbjct: 60 DAGVSALAQTVAF--EAPP--W--------LTPRAFNGQLPGSIRVWAAADVREGFHATH 107
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y L A I D + D L GEH FHN T
Sbjct: 108 DAVERTYRYHLYAPAID----------DDRVRD---ALTRLSGEHDFHNLT 145
>gi|448319614|ref|ZP_21509110.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
gi|445607607|gb|ELY61487.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
Length = 285
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 22/173 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y G+DY G Q Q D + T+E L AL +A G+ ES+ + +A + RTD
Sbjct: 5 AFRIAYDGSDYYGFQRQPD---VPTVEDALFDAL-RAHGVLESD--ARKPAGYAAAGRTD 58
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRRE 199
GV +LA + L E P +W L R N LP +++ ++ F
Sbjct: 59 AGVSALAQTVGL--EAP--SW--------LTPRAFNGELPADVRAWAAADPADGFHATHH 106
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAEIDSHISD---FNAILNEFEGEHPFHNYT 249
R+Y+Y L A + A D F A + G H FHN T
Sbjct: 107 ATRREYTYHLYAPPANRGEENEPARDGRAAVDDDRFRAACDALSGTHDFHNLT 159
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGIDLAKRVNAH-----------LPRNIKV 184
RTDKGV + +I L + P + + + V A LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANVAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|448353672|ref|ZP_21542447.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
gi|445639896|gb|ELY92991.1| tRNA pseudouridine synthase A [Natrialba hulunbeirensis JCM 10989]
Length = 286
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA-WARSSRT 139
A R+ Y GTDY G Q Q D + T+EG A+F A + + K A +A + RT
Sbjct: 3 AFRLAYDGTDYYGFQRQPD---VPTVEG----AMFDALRALDVLAPDADKPAGYAAAGRT 55
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV +LA + + PD W L R N+ LP +I+ ++ + F
Sbjct: 56 DAGVSALAQTVAFET---PD-W--------LTPRAFNSKLPADIRAWTAADAPDEFHATH 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAE-IDSHISD---FNAILNEFEGEHPFHNYT 249
R+Y+Y L A + A+ + +H D F A + G H FHN T
Sbjct: 104 HAREREYTYYLYAPPASDTDEGHASPTVTAHTVDDDRFQAACDALSGPHNFHNLT 158
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGKDSEDFNVKGEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|396082522|gb|AFN84131.1| tRNA pseudouridine synthase A [Encephalitozoon romaleae SJ-2008]
Length = 312
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 27/166 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y G Y G+ Q + TI G LE AL KA G+ E K+ +A
Sbjct: 35 QRTVALKISYNGEGYSGVSPQ---NGRKTIGGNLEYAL-KATGLGE-------KLVYA-- 81
Query: 137 SRTDKGVHSL---ATMICLKMEIPPD----AWKDD--PYGIDLAKRVNAHLPRNIKVFSI 187
RTD GV ++ A+ + + + P+ KDD Y D+ +N +LP +I+V
Sbjct: 82 GRTDSGVSAINMVASGVVISRVLEPNRSYVITKDDHKEYKYDIM--LNNYLPSDIRVIGW 139
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
P +F+ R C R+Y Y E + IN AA S I D N
Sbjct: 140 APVPDTFNARFTCIQRQYRYYFHKEGLDINEMNQAA---SRIKDIN 182
>gi|428671151|gb|EKX72069.1| tRNA pseudouridine synthase A, putative [Babesia equi]
Length = 264
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 49/211 (23%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KV + YVG D GL Q+DE T+EG L AL K +++ L + R++R
Sbjct: 12 KVMIDFSYVGRDLHGLAYQKDE---DTVEGRLFDALDKVNMLKD-----LVSSRYERAAR 63
Query: 139 TDKGVHSLATMICLKME-----------------IPPDAWK---DDPYGI-------DLA 171
TDKGVH+L ++ + P K D+ + +
Sbjct: 64 TDKGVHALHNYCSFFVDPGFVLSLPDHLHRFYEFLKPSLVKFETDEERNLFRQTRISGMT 123
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD 231
+ +N HLP+ I+V SI +F R +C R Y Y E + I A +
Sbjct: 124 RPINKHLPKYIRVNSIAIVPPNFSARGDCTYRIYKYYFQPENMDIYLMREACQY------ 177
Query: 232 FNAILNEFEGEHPFHNYTERSKYRRK-PHKT 261
F G H F + + K K P+KT
Sbjct: 178 -------FVGHHNFTQFCKTDKRNPKDPNKT 201
>gi|452994614|emb|CCQ93719.1| tRNA pseudouridine synthase A [Clostridium ultunense Esp]
Length = 256
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+A+ V Y GT Y G Q Q +L TI+ LE ALF+ + +K +
Sbjct: 5 KKMAMIVAYDGTRYYGFQRQ---STLPTIQERLEEALFRL---------HQRKTGVTGAG 52
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD VH+ +I + IPP+ W PY + A LP +I++ + P + SF
Sbjct: 53 RTDARVHATGQVIHFMTDLRIPPERW---PYAL------QAFLPEDIQIRAAYPVEDSFH 103
Query: 196 PRRECNLRKYSY 207
R ++Y Y
Sbjct: 104 ARYSAVGKRYRY 115
>gi|148238175|ref|NP_001088988.1| pseudouridylate synthase 1 [Xenopus laevis]
gi|57032536|gb|AAH88978.1| LOC496371 protein [Xenopus laevis]
Length = 167
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KV + Y G Y G+Q TIE EL AL + I +++ +++K+++ R
Sbjct: 54 KRKVVFLIAYSGKGYHGMQRNVGTSQFKTIEDELVQALVLSECIPDNHAEDMKKMSFQRC 113
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
+RTDKGV + ++ LK+ W D ++ +++N +LP +I++
Sbjct: 114 ARTDKGVSAAGQVVSLKI------WLID----NVVEKINENLPSHIRIL 152
>gi|70952835|ref|XP_745558.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525920|emb|CAH80907.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 507
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 69 DDKWEPVRK-KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN 127
D ++E K KK L VGY+G+ Y G Q Q EH TIE E+E L K ++ ++ G
Sbjct: 48 DGQYEKNNKFKKYGLCVGYIGSRYHGCQGQGKEH--MTIENEIERTLTKINAVKNNSKG- 104
Query: 128 LQKIAWARSSRTDKGVHSLATMICLKMEI 156
+RS+RTD GVH+L + + I
Sbjct: 105 -FNYCLSRSARTDLGVHALYNLFVYNINI 132
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 357 DKLSASHFR--KIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLP 414
+ + + FR K F S KL ++ I I G+SF++HQIRKM+ AV R P
Sbjct: 376 NNIDTTTFRYIKYFDVSTVKL---YDHNFISIRILGQSFLMHQIRKMITLAVETFRNATP 432
Query: 415 RDILTLSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMV--ESEEILKM 470
++ + SL S I + L P + L L F+ P+ + E+EEIL
Sbjct: 433 KNSIYYSLNTKSYIPILLFPPDGLMLVCPYFNSYNEKVCNPPDTPQICFDENEEILNF 490
>gi|441148629|ref|ZP_20964970.1| tRNA pseudouridine synthase A [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440619839|gb|ELQ82879.1| tRNA pseudouridine synthase A [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 279
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G D+ G QR + T++ ELETAL + + Q + R
Sbjct: 7 RVRLDLSYDGKDFSGWAKQR---ARRTVQEELETAL-------RTVTRSAQTYELTVAGR 56
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L +R+ LP++++V+ + F+ R
Sbjct: 57 TDAGVHARGQVA--HVDLPAELWAE--HADKLLRRLAGRLPKDVRVWRAADAPYGFNARF 112
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + D + NA GEH F Y +R
Sbjct: 113 SAIWRRYAYRVTDHPGGVDPLLRGHVLWHDWDLDVEAMNAASQALLGEHDFAAYCKR 169
>gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti]
gi|108879706|gb|EAT43931.1| AAEL004663-PA [Aedes aegypti]
Length = 467
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 65 PNSSDDK-----WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGG 119
P S+D K + K+ + LR Y+G DY+G Q D S TIE L AL +
Sbjct: 56 PKSNDKKQRKFDFASCHKRHILLRFYYLGWDYQGYASQED--SARTIEHLLFNALTRVCL 113
Query: 120 IRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLA 171
I N + R RTDKGV + ++ L + ++ P++ ++ I+
Sbjct: 114 IENRETSN-----YHRCGRTDKGVSAFHQVVSLDVRSKFAPENQLEPESIANE---INYC 165
Query: 172 KRVNAHLPRNIKVFSILPSQR-SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHIS 230
+ +N LP++I+ + +P ++ R +C R Y Y P + I++ A
Sbjct: 166 QLLNRVLPQDIRCVAWMPMVNPNYSARFDCRSRTYRYFFPRGSLNIDAMKEACTFLVGAH 225
Query: 231 DF 232
DF
Sbjct: 226 DF 227
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 21/173 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + + N + R
Sbjct: 65 RRHVALRIAYLGWGYQGFASQ--ENTSNTIEEKLFEALKKTRLVDDRQTSN-----YHRC 117
Query: 137 SRTDKGVHSLATMICLKM------EIPPDAWKDDPYG--------IDLAKRVNAHLPRNI 182
RTDKGV + +I L + E + D G + +N LP +I
Sbjct: 118 GRTDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDI 177
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+V + P + F R C R Y Y P + + TAA+ DF +
Sbjct: 178 RVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNL 230
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVAMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST]
gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 15/163 (9%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + LR Y+G DY+G Q D S+ TIE + AL K I N + R
Sbjct: 73 KRHILLRFYYLGWDYQGFAAQED--SIETIEHHMFAALKKVCLIESRETSN-----YNRC 125
Query: 137 SRTDKGVHSLATMICLKM------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS 190
RTDKGV + +I L + E+ DA + +D +N LP I+ + +P
Sbjct: 126 GRTDKGVSAFHQVISLDVRSKFAPELQLDA-NNLTNELDYCAMLNRVLPEEIRCLAWMPM 184
Query: 191 QR-SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
++ R +C R Y Y P + I + +A DF
Sbjct: 185 VNPAYSARFDCRSRTYRYFFPRGDLNITAMEESARYLVGAHDF 227
>gi|448312986|ref|ZP_21502716.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
gi|445599645|gb|ELY53674.1| tRNA pseudouridine synthase A [Natronolimnobius innermongolicus JCM
12255]
Length = 293
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 79/184 (42%), Gaps = 36/184 (19%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNY--GNLQKIA-WARSS 137
A R+ Y G Y G Q Q D ++T+E ALF G+RE + K A +A +
Sbjct: 5 AFRIAYDGAGYHGFQRQPD---VATVE----DALFD--GLRELGVLAADADKPAGYAAAG 55
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDP 196
RTD GV +LA ICL E P W L R NA LP +I+ ++ + + F
Sbjct: 56 RTDAGVSALAQTICL--EAP--EW--------LTPRAFNAGLPADIRAWAAVDAPPDFHA 103
Query: 197 RRECNLRKYSYLLPAEVIGIN---------SQLTAAEIDSHISD--FNAILNEFEGEHPF 245
+ + R YSY L A + TA E + + D F A G H F
Sbjct: 104 THDASERTYSYHLYAPSASNDHGGDDATDAGGHTALERECAVDDGRFRAACEALSGPHDF 163
Query: 246 HNYT 249
HN T
Sbjct: 164 HNLT 167
>gi|337283917|ref|YP_004623391.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
gi|334899851|gb|AEH24119.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
Length = 266
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 21/180 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVALR+ Y GT + G Q Q SL T+EGEL L + G L+ + + +SR
Sbjct: 2 KVALRIAYDGTQFHGFQRQ---PSLRTVEGELLRVLEEVG---------LEPVDFKGASR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TDKGV + ++ + DD + + +NA L ++ V + + F PR
Sbjct: 50 TDKGVSAFGNVVAFTV-------PDDAAHLVKPRVLNARL-EDVWVLGVAKVPKDFHPRF 101
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ Y Y L + + + A + DF+A +G P S R P
Sbjct: 102 WAKSKVYRYYLVGWGLNVGAMRECAALFVGEHDFSA-FARLDGRDPVRRILRASVEERGP 160
>gi|87308089|ref|ZP_01090231.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
gi|87289171|gb|EAQ81063.1| Pseudouridylate synthase (tRNA [Blastopirellula marina DSM 3645]
Length = 260
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 25/136 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ + L V Y GT+Y G Q+Q D+ TI+G LE L K G +KI S
Sbjct: 6 ERALQLIVSYDGTNYAGWQIQNDQR---TIQGALERTLLKITG---------EKIRVTGS 53
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD GVH++ ++ +M ++ PD + + +NA LP +I V S + F
Sbjct: 54 GRTDSGVHAIGQVVSFRMQSQLSPDVMR---------RALNAELPPDIVVQSARNAIPEF 104
Query: 195 DPRRECNLRK-YSYLL 209
+ +C ++K Y YLL
Sbjct: 105 NA-IDCAIKKRYRYLL 119
>gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium
dendrobatidis JAM81]
Length = 289
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
R + +AL++ Y+G Y G ++ S+ T+E + +FKA + + AW+R
Sbjct: 22 RARHIALKISYIGDKYYGFASASND-SVPTVE----SYIFKALEVARLIPSDGGACAWSR 76
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDA----WKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
RTDKGV + ++ + + P D W PY +N LP +I+V + P
Sbjct: 77 CGRTDKGVSAFDQVVSVWVRTARPGDRDTLDWDQLPY----LNILNRLLPDDIRVLAWSP 132
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAA 223
FD R C+ RKY+Y + + + AA
Sbjct: 133 VDPIFDARFTCSHRKYNYFFDGAGLDLIAMRDAA 166
>gi|119356907|ref|YP_911551.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266]
gi|166228693|sp|A1BFF0.1|TRUA_CHLPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119354256|gb|ABL65127.1| tRNA pseudouridine synthase A [Chlorobium phaeobacteroides DSM 266]
Length = 258
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK-IAWARS 136
K + + + Y GT Y G QR S T++GE+E L + LQ+ I A +
Sbjct: 10 KNIRITIEYDGTGYAG--WQRQAGSFCTVQGEIERILSQI----------LQEDIRLAGA 57
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGVH+ A + K + PD + +NA LP I++ L F
Sbjct: 58 GRTDKGVHARAQIATFKSRSSLGPD---------RMVHSMNALLPNTIRISDPLVVPEGF 108
Query: 195 DPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R R+Y Y + P+ V+G S + +D + N + + GEH F +++
Sbjct: 109 HARHSAKEREYRYFVREEPSAVLGRFSGCSYGSLD--LMSMNRVASYVLGEHDFSVFSKE 166
Query: 252 SKYR 255
++ R
Sbjct: 167 TRDR 170
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALSKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRI 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVAMDYAA--QKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|397774563|ref|YP_006542109.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
gi|397683656|gb|AFO58033.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
Length = 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GTDY G Q Q + + T+E + AL +A + + + +A + RTD
Sbjct: 5 AFRIAYDGTDYYGFQRQ-PQPDIPTVEDAVFDAL-RALSVLDPEAD--KPAGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA I L++ PD W + +NA LP +++ ++ + F
Sbjct: 61 AGVSALAQTIALEV---PD-WL-------TPRALNAELPADVRAWAAADAPDGFHATHHA 109
Query: 201 NLRKYSYLL---PAEVIGINS--QLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y+Y L PA+ +S +TA +D F A + G H HN T
Sbjct: 110 SRRAYTYHLYAPPADAAMPDSAVDVTAPTVDDE--RFRAACDALSGTHDIHNLT 161
>gi|114567807|ref|YP_754961.1| pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122317314|sp|Q0AUL4.1|TRUA_SYNWW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|114338742|gb|ABI69590.1| Pseudouridylate synthase [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 249
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y G++Y G Q+Q++ +T++ ELE A+++ G R + I A R
Sbjct: 3 RIKLLLEYDGSNYHGFQLQKNA---NTVQAELEKAIYRLSGERAT-------IVCA--GR 50
Query: 139 TDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ ++ IP D W A +N+ LP +I+V ++ F+P
Sbjct: 51 TDAGVHAWGQVVAFDSCSTIPGDRW---------AYALNSQLPEDIQVLESQETRAEFNP 101
Query: 197 RRECNLRKYSYLL 209
R + + Y YL+
Sbjct: 102 RFDALKKCYGYLI 114
>gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 510
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 78/203 (38%), Gaps = 49/203 (24%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL+V Y+G Y G Q + + TIEG L +AL K IR+ +++ + +S
Sbjct: 90 RRFVALKVAYLGWHYHGFAAQ--QCTEETIEGHLFSALQKTCLIRD-----IKECNYTKS 142
Query: 137 SRTDKGVHSLATMICLKME---------IPPDAWKDD--------------------PYG 167
RTDKGV + +I L + IPP DD P
Sbjct: 143 GRTDKGVSAFGQVISLYVRSNLKQGDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTPIE 202
Query: 168 IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDS 227
+ +N LP I+V + P F+ R R Y Y + I + A
Sbjct: 203 YPYVRMLNGVLPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAG---- 258
Query: 228 HISDFNAILNEFEGEHPFHNYTE 250
N F G H F N+ +
Sbjct: 259 ---------NHFLGSHDFSNFCK 272
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALSKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANATAEEIRYTHILNRVLPPDIRI 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVAMDYAA--QKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 32/177 (18%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
+E +++ AL++ YVG +Y+GL Q++ + +T+E +L AL K I+ + N
Sbjct: 106 FEIYQQQHYALKMSYVGINYQGLAYQQE--TDNTVEEQLFKALEKTTLIKNRDNCN---- 159
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
+ RS RTDKGV +L +I + + I + + ++ +I++
Sbjct: 160 -FTRSGRTDKGVSALGQVIGITLRT----------SIKIGENIDE--IDDIRILGCSKVD 206
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+F+ R +C R Y Y + I AA N F GEH F N+
Sbjct: 207 PAFNARFDCQKRIYKYYFFENQMDIQRMKEAA-------------NLFLGEHDFRNF 250
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>gi|302543331|ref|ZP_07295673.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus ATCC
53653]
gi|302460949|gb|EFL24042.1| tRNA pseudouridine synthase A [Streptomyces himastatinicus ATCC
53653]
Length = 283
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G D+ G QR+ T++GELE+AL R S +L + R
Sbjct: 11 RVRLDLSYDGKDFSGWAKQRERR---TVQGELESALGTV--TRSSETPDLTV-----AGR 60
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L +R+ LP +++V+ + + F+ R
Sbjct: 61 TDAGVHARGQVA--HVDLPEELWAE--HRDKLLRRLAGRLPHDVRVWRVAAAPPGFNARF 116
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + + NA GEH F Y +R
Sbjct: 117 SAIWRRYAYRVVDHPGGVDPLLRGHVLWHDWPLDVDAMNAASAPLLGEHDFAAYCKR 173
>gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706882|gb|EMD46641.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 48/198 (24%)
Query: 76 RKKKVALRVGYVGTDYRGLQ--MQRDEHSLS--------TIEGELETALFKAGGIRESNY 125
+ + +A+R+ Y+G DY G+Q + D + TIE +L ALFK I+
Sbjct: 34 KTRHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFKALFKTRLIQ---- 89
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAW-----KDDPY-------GIDLAKR 173
N + + R RTDKGV + ++ D W KD+ +D +
Sbjct: 90 -NTKDCKYNRCGRTDKGVSAFGQVV--------DLWVRSNLKDETILYTKREGELDYCRM 140
Query: 174 VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
+N LP +I+ F+ R C R Y Y + AA++
Sbjct: 141 LNGLLPTDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQL-------- 192
Query: 234 AILNEFEGEHPFHNYTER 251
F GEH F N+ ++
Sbjct: 193 -----FLGEHDFTNFCKK 205
>gi|448341948|ref|ZP_21530902.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
gi|445626658|gb|ELY80000.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
Length = 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GTDY G Q Q + + T+E + AL +A + + + +A + RTD
Sbjct: 5 AFRIAYDGTDYYGFQRQ-PQPDIPTVEDAVFDAL-RALSVLDPEAD--KPAGYAAAGRTD 60
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA I L++ PD W + +NA LP +++ ++ + F
Sbjct: 61 AGVSALAQTIALEV---PD-WL-------TPRALNAELPADVRAWAAADAPDGFHATHHA 109
Query: 201 NLRKYSYLL---PAEVIGINS--QLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y+Y L PA+ +S +TA +D F A + G H HN T
Sbjct: 110 SRRAYTYHLYAPPADAAVPDSAVDVTAPAVDDE--RFRAACDALSGTHDIHNLT 161
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 61 RRHVALKIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD-------PYGIDLAKRVNAHLPRNIKVFSI 187
RTDKGV + +I L + + P +D I +N LP +I++ +
Sbjct: 114 GRTDKGVSAFGQVISLDLRSQFPRRRDSEDFNVKEEAAEEIRYTHILNRVLPPDIRILAW 173
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
P + SF R C R Y Y P A++D D+ A ++ G H F N
Sbjct: 174 APVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHDFRN 220
>gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
Length = 266
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 65/157 (41%), Gaps = 18/157 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL++ Y G+ + G Q Q L T+EGE+ L K I N + +SR
Sbjct: 2 RIALKIAYDGSKFYGFQRQ---PGLRTVEGEIIRVLQKLDVIESPENANFKG-----ASR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GV +L +I E P A RV H R+I V + F PR
Sbjct: 54 TDRGVSALGNVIAFNTENPKLA----------QPRVLNHHLRDIWVLGVAQVSDDFHPRF 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+ Y Y L E +N+ A + DF+A
Sbjct: 104 WAKSKIYRYYLVDEGFDVNAMKECARLFVGTHDFSAF 140
>gi|337751700|ref|YP_004645862.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
gi|336302889|gb|AEI45992.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus KNP414]
Length = 258
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ +A++V Y GT Y G Q Q + L T++ ELE A+ G +K+ S
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPE---LVTVQDELEQAILFLTG---------EKVKLTSSG 49
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I L+ E IP D W +N+ LP +I V+ F
Sbjct: 50 RTDAGVHAKGQVINLQTEARIPVDRW---------CHAMNSRLPDDIVVWHAEEVPAEFH 100
Query: 196 PRRECNLRKYSYLL 209
RR + Y Y +
Sbjct: 101 ARRSAKRKTYRYTI 114
>gi|379724643|ref|YP_005316774.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
gi|378573315|gb|AFC33625.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus 3016]
Length = 258
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ +A++V Y GT Y G Q Q + L T++ ELE A+ G +K+ S
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPE---LVTVQDELEQAILFLTG---------EKVKLTSSG 49
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I L+ E IP D W +N+ LP +I V+ F
Sbjct: 50 RTDAGVHAKGQVINLQTEARIPVDRW---------CHAMNSRLPDDIVVWHAEEVPAEFH 100
Query: 196 PRRECNLRKYSYLL 209
RR + Y Y +
Sbjct: 101 ARRSAKRKTYRYTI 114
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K I N + R
Sbjct: 61 RRHVALKIAYLGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLIESRQTSN-----YHRC 113
Query: 137 SRTDKGVHSLATMICLKMEIP-PDAWKDDPYGI-----DLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + P + + + D AK + N LP +I+V
Sbjct: 114 GRTDKGVSAFGQVISLDLRSHFPKGRDSEDFNLTDEVNDAAKEIRYTHILNRVLPPDIRV 173
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ + SF R C R Y Y P A++D I N ++ G H
Sbjct: 174 LAWASVEPSFSARFSCLERTYRYFFP-----------RADLD--IVTMNCAAQKYVGTHD 220
Query: 245 FHN 247
F N
Sbjct: 221 FRN 223
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 438
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 37/198 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ VAL+V Y G + G S ++ +E+ +FKA G+ ++I ++R
Sbjct: 101 KRYVALKVMYFGQRFYGFS------SEGQMDPTVESEIFKALERTRLLIGDKKEIQYSRC 154
Query: 137 SRTDKGVHSLATMICL-------------KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIK 183
RTDKGV ++ +I L K+ + K ID + +N LP +I+
Sbjct: 155 GRTDKGVSAVGQVIALLLRSKVKDIDEIGKVFGETASQKHSEGEIDYVRVLNRVLPNDIR 214
Query: 184 VFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEH 243
+ P F R C R+Y Y + + + + +A + +F GEH
Sbjct: 215 IIGWCPVPNDFSARFSCLSREYKYFFRGDNLNLLAMESAGK-------------KFIGEH 261
Query: 244 PFHNYTERS-----KYRR 256
F N+ + YRR
Sbjct: 262 DFRNFCKMDAMNVHNYRR 279
>gi|75906940|ref|YP_321236.1| tRNA pseudouridine synthase A [Anabaena variabilis ATCC 29413]
gi|75700665|gb|ABA20341.1| tRNA pseudouridine synthase [Anabaena variabilis ATCC 29413]
Length = 282
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D +P + ++VAL V Y+GT++ G Q Q+ T++ E+ETA+ K G + +G
Sbjct: 3 DSHQPKQTQRVALVVQYLGTNFHGWQRQKQH---RTVQEEIETAIAKILGHHVTLHG--- 56
Query: 130 KIAWARSSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
+ RTD GVH+ A + IPP W A +N++LP++I + +
Sbjct: 57 ------AGRTDSGVHAAAQVAHFDATGLIPPHKW---------ASVLNSYLPKDILIKAS 101
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAE 212
+ R R+Y Y + E
Sbjct: 102 AAVGDRWHARFSAAYRRYRYTIYTE 126
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 21/175 (12%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLS--TIEGELETALFKAGGIRESNYGNLQKIA-WA 134
+K+AL V Y+G DY G Q ++ + T+E L AL K + + ++ K+A +A
Sbjct: 11 RKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESAR--DVFKVADYA 68
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
R RTD+GV L ++ L+ D+ +D +N LP +++ P
Sbjct: 69 RCGRTDRGVSGLGQIVTLRARSNGAEGVDEE--LDYVALLNRALPNDVRALGWAPVDDEL 126
Query: 195 DPRRECNLRKYSYLL-PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+ R +C R+Y Y + + + AA FEG H F N+
Sbjct: 127 NARFDCEWRQYKYFFEKTNGLDLGAMREAAR-------------AFEGVHDFRNF 168
>gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 465
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +AL+ Y+G +Y GL Q + L T+E + AL + I E K ++R
Sbjct: 88 KRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITEP---TPDKCKFSRC 144
Query: 137 SRTDKGVHSLATMICLKM-----EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
RTDKGV ++ +I L + E ++D I +NA LP +I++ ++ L
Sbjct: 145 GRTDKGVSAMNQVISLVVRSNLNEEEQLLKENDHKEIKYLSIINALLPPDIRMTAVCLRP 204
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C+ R Y YL D I N ++ G H F N+ +
Sbjct: 205 PPKFDARFSCDYRHYRYLFKKH-------------DLDIELMNEACIKYIGSHDFRNFCK 251
>gi|386727392|ref|YP_006193718.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
gi|384094517|gb|AFH65953.1| tRNA pseudouridine synthase A [Paenibacillus mucilaginosus K02]
Length = 258
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ +A++V Y GT Y G Q Q + L T++ ELE A+ G +K+ S
Sbjct: 2 RNIAMKVSYDGTAYHGFQTQPE---LVTVQDELEQAILFLTG---------EKVKLTSSG 49
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I L+ E IP D W +N+ LP +I V+ F
Sbjct: 50 RTDAGVHAKGQVINLQTEARIPVDRW---------CHAMNSRLPDDIVVWHAEEVPAEFH 100
Query: 196 PRRECNLRKYSYLL 209
RR + Y Y +
Sbjct: 101 ARRSAKRKTYRYTI 114
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVA ++GY+G Y G Q+Q ++ + G +L GI + ++ + R
Sbjct: 2 KVAFKLGYLGRGYHGFQLQPAAPTVQAVVGRALRSL----GINDGSF--------CYAGR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLA--KRVNAHLPRNIKVFSILPSQRSFDP 196
TD+GV +L +I ++ P DLA + VN+ LP ++ ++ P +F
Sbjct: 50 TDRGVSALGQVIDFYVQ---------PAKADLAVPRVVNSRLPTDVWAWAWAPVPENFSA 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEG 241
R R+Y Y LP + + + AA + DF + +E G
Sbjct: 101 RHAALWREYRYHLPGGGLDLEAMREAAGELLGVHDFRNLSSEKRG 145
>gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
Length = 271
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 41/200 (20%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVAL++ Y+G +Y G Q Q D T++ ++ AL + G I +G+ + R
Sbjct: 2 KVALKLAYLGDNYYGFQKQPDR---VTVDSQVRRALAQIGVI----HGDF-----CYAGR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR--VNAHLPRNIKVFSILPSQRSFDP 196
TD+GV +L +I D W D+ IDL + VN LPR+I ++ + F
Sbjct: 50 TDRGVSALGQVI--------DFWIDEDK-IDLTRPRCVNGRLPRDIWTWAWSIAPVGFSA 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRR 256
R R+Y YLL G++ L D + GEH F N++
Sbjct: 101 RWNALWREYQYLLWHP--GLDRDLMEEAADMLL-----------GEHDFRNFSS-----A 142
Query: 257 KPHKTGRVSKRAKASKDAVF 276
K RV K +D +F
Sbjct: 143 KVGTVKRVEKLEIRERDGLF 162
>gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 302
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 81/196 (41%), Gaps = 32/196 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y GT++ G Q + +++ + E T LF+A + + R
Sbjct: 28 RLRLDIAYDGTEFAGWATQAGQRTVAGVLDEALTTLFRA------------PMRLRAAGR 75
Query: 139 TDKGVHSLATMICLKMEIPPDAWKD---------DPYGIDLAKRVNAHLPRNIKVFSILP 189
TD GVH AT +++PPDA + +P + L +R+ LP +++V I
Sbjct: 76 TDTGVH--ATGQVAHVDVPPDALPNAYPRAPRVGEPEFLPLVRRLGRFLPTDVRVLGIAR 133
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQ----LTAAEIDSHISDFNAILNEFEGEHPF 245
+ FD R R Y+Y L G+ Q +TA + A + G H F
Sbjct: 134 APAGFDARFSALRRHYTYRLSTAPYGVEPQRARYVTAWPRPLDVDAMAAASRDLVGLHDF 193
Query: 246 HNYTERSKYRRKPHKT 261
+ R +P+ T
Sbjct: 194 AGFC-----RHRPNAT 204
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 67/171 (39%), Gaps = 15/171 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y G +Y GL Q L T+E L A K + L W R
Sbjct: 57 RRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDK--GLDGCGWERC 114
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD+GV + ++ L + + ++ + +N LP I+V + P +F
Sbjct: 115 GRTDRGVSAAGQVVSLWPSMRQPSREETRSELRYVSILNRVLPPTIRVLAWSPISSTFSA 174
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
R C R Y Y + + + AA + GEH F N
Sbjct: 175 RFNCQSRHYKYFFSPQELDLGLMQQAA-------------DRLVGEHDFRN 212
>gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 279
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L V Y GTD+ G Q T++GELE AL + L +++ + R
Sbjct: 7 RVRLDVAYDGTDFSGWAAQPGRR---TVQGELEAAL--------ARVLRLPEVSLTCAGR 55
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + + +IP W+ + G + +R+ LP++++V + + FD R
Sbjct: 56 TDAGVHARGQVA--QADIPARTWESE--GERVLRRLAGVLPKDVRVRAARLAPPGFDARF 111
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y Y + G++ L ++ H + NA GEH F + +R
Sbjct: 112 SPLFRRYLYRVSDAPYGVDP-LLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAFCKR 168
>gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 287
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 43/199 (21%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
R + VAL + YVG ++G R +++ +TIEG L +AL K I E+ + ++A++R
Sbjct: 9 RTRYVALELMYVGWAFQGFA--RQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAYSR 66
Query: 136 SSRTDKGVHSLATMICLKME------------------------IPPDAWKDDPYGIDLA 171
RTD+GV +L ++ L++ + +W + D
Sbjct: 67 CGRTDRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEF--DYP 124
Query: 172 KRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISD 231
+ +N LP +++ P F+ R C R ++ + I + TAA
Sbjct: 125 RLINKALPPEVRILGWTPVPADFNAR--CGGRAGEWVYQQHSLDIQAMRTAAA------- 175
Query: 232 FNAILNEFEGEHPFHNYTE 250
F GEH F N+ +
Sbjct: 176 ------HFIGEHDFRNFCK 188
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VAL++ Y+G+++ G Q Q + T+EGEL +FK I E + ++ +
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPN---YRTVEGEL-LRVFKETNIIEDTW----TAHYSVAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVHS +I D+ I+ ++N LP +IK+ F R
Sbjct: 54 RTDKGVHSTGNVISF--------ITDEDIHIN---QLNGLLPDDIKIIGEARVPYGFKVR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
R Y+Y+ P S +D I+ + + F G+H F N+++R+
Sbjct: 103 FPLT-RTYTYIQPI------SPFEKKNLD--ITKMHVAMESFIGKHNFRNFSKRN 148
>gi|319639209|ref|ZP_07993960.1| tRNA pseudouridine synthase A [Neisseria mucosa C102]
gi|317399393|gb|EFV80063.1| tRNA pseudouridine synthase A [Neisseria mucosa C102]
Length = 281
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 88/216 (40%), Gaps = 37/216 (17%)
Query: 64 TPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRES 123
T SS +W AL + Y G+ + G Q Q + L T++ LE AL G
Sbjct: 7 TTGSSVQRW--------ALTLSYDGSRFYGWQKQAGD--LPTVQTALEQALTSIAG---- 52
Query: 124 NYGNLQKIAWARSSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRN 181
++I + RTD GVH+ A ++ + P AW + VNAHLP
Sbjct: 53 -----ERINTIVAGRTDTGVHATAQVVHFDTSVSRPEQAW---------VRGVNAHLPDG 98
Query: 182 IKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHIS-DFNAILNE- 238
+ V F+ R + R Y YLL E + S L + +H+ D N +
Sbjct: 99 VAVLLAQKVAPHFNARFDAYGRHYRYLL--ESSPVRSPLLVGRVGWTHLKLDLNLMRQAA 156
Query: 239 --FEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASK 272
EGEH F ++ + P KT +K + S+
Sbjct: 157 ALLEGEHDFSSFRAAECQAKSPIKTLYSTKISGTSR 192
>gi|390365271|ref|XP_794710.3| PREDICTED: tRNA pseudouridine(38/39) synthase-like
[Strongylocentrotus purpuratus]
Length = 282
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ VAL++ Y+G DY G +Q D S +T+E L AL K I N ++R
Sbjct: 71 RHVALKITYLGWDYHGFVVQED--SNNTVEHHLFEALTKTKLIESRQTSN-----YSRCG 123
Query: 138 RTDKGVHSLATMICLKMEIPP----------DAWKDDPYG-----IDLAKRVNAHLPRNI 182
RTDKGV + +I + + D + G I+ +N LP I
Sbjct: 124 RTDKGVSAFGQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPLMLNRVLPSEI 183
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPA 211
+V + P++ SF R + R Y Y PA
Sbjct: 184 RVIAWTPAEPSFHARFDTLHRTYKYFFPA 212
>gi|209876690|ref|XP_002139787.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
gi|209555393|gb|EEA05438.1| tRNA pseudouridine synthase family protein [Cryptosporidium muris
RN66]
Length = 497
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 16/93 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHS---LSTIEGELETALFKAGG--IRESN--YGNLQ 129
++ + +GY GT+Y G+Q+Q + ++ + TIE +LE AL K+ IR+S Y NL+
Sbjct: 7 RRTYCMAIGYNGTNYYGMQIQSNTNNCKYIETIESKLEEALIKSSMLVIRKSKNEYVNLK 66
Query: 130 K---------IAWARSSRTDKGVHSLATMICLK 153
+ I W R RTDKGVHS+ ++ +
Sbjct: 67 EFNSSSFLTSINWTRVGRTDKGVHSVCQIVSFR 99
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 360 SASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILT 419
+AS +R I + +L ++I+I G+SF+LHQIRK++ A+ + R P +
Sbjct: 359 NASAWRHIDKINVNRLPVKNKLKLLKITIKGQSFLLHQIRKIIALAIEIYRGSAPLSSIN 418
Query: 420 LSLAKHSRIVLPLAPSEVLFL---RANSFSVRTRPGVTRPEMQT--MVESE---EILKMV 471
L + + LAPS+ L L + ++ R V ++ ++ + + +K++
Sbjct: 419 LCFGSR-KYSIHLAPSQGLLLDRVYYDHYNQRISSSVNLNDVNIPYLIFDDLKLQYVKLI 477
Query: 472 DEFYTSVTLPEVSKFL 487
+EF + P + K++
Sbjct: 478 EEFKINQIYPVIEKYI 493
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
L K++N LP+ I++F+++ ++FD R++C R+Y Y++P V+
Sbjct: 178 LVKKLNLILPQTIRIFTLIRVSKNFDARKDCFRRQYEYIMPEYVL 222
>gi|224534868|ref|ZP_03675437.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S]
gi|224513808|gb|EEF84133.1| tRNA pseudouridine synthase A [Borrelia spielmanii A14S]
Length = 246
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 88/206 (42%), Gaps = 40/206 (19%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K + + S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTIQGEIEKALMKINKKKIKIHS---------SG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I M I +L K +NA L ++ IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDMNINIQLN-------NLKKALNAILLKSGIKILKLKHVKNSFHP 102
Query: 197 RRECNLRKYSYLL----------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
R RKYSY + + +N +L +IS+ N + G H F
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWESYQAYYVNKKL-------NISNLNQMAKILIGSHDFT 155
Query: 247 NYT---ERSKYRRKPHKTGRVSKRAK 269
++ +RSK + + + K+ K
Sbjct: 156 TFSCIKDRSKSKFRHIHFAKFKKKGK 181
>gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus]
gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus]
Length = 470
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + LR Y+G D++G Q D S +TIE L AL + I N + R
Sbjct: 73 KRHILLRFFYLGWDFQGYATQED--SANTIEHHLFNALTRVCLIESRESSN-----YHRC 125
Query: 137 SRTDKGVHSLATMICLKM--------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSIL 188
RTDKGV + ++ L + ++ P++ +++ ++ + +N LP I+ + +
Sbjct: 126 GRTDKGVSAFHQVVSLDVRSKFPPESQLAPESLQNE---LNYCQLLNRVLPAEIRCVAWM 182
Query: 189 PSQR-SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
P+ ++ R +C R Y Y P + +++ E DF +
Sbjct: 183 PTANPNYSARFDCRSRTYRYFFPRGSLDVDAMRKGCEFLVGSHDFRNL 230
>gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
Length = 388
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 22/140 (15%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHS 145
Y G +Y GL Q+D +++T+E ++ AL + I N K W RS RTDKGV +
Sbjct: 4 YYGWEYEGLVQQQD--TVNTVEEVIKDALLRTRLIESWN-----KCEWIRSGRTDKGVSA 56
Query: 146 LATMICLKMEIP-PDA----WKD--DPYG--------IDLAKRVNAHLPRNIKVFSILPS 190
+ L + P+ W + DP+ + K +N LP+NI+V + P
Sbjct: 57 FRQIASLIVRSSDPEGEHVFWPENADPHSRITPPHSELMYLKMLNGVLPKNIRVLAWAPV 116
Query: 191 QRSFDPRRECNLRKYSYLLP 210
F+ R C R Y Y P
Sbjct: 117 ALDFNARFSCTKRVYKYAFP 136
>gi|374339101|ref|YP_005095837.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
gi|372100635|gb|AEX84539.1| pseudouridylate synthase I [Marinitoga piezophila KA3]
Length = 244
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL---FKAGGIRESNYGNLQKIAWAR 135
+VA V Y GT + G Q Q + T++GE E L FK + I+W
Sbjct: 2 RVAAIVAYDGTKFNGFQGQ---PKVRTVQGEFEKVLKRIFKQ-----------KVISWG- 46
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
+ RTD GVH +I ++P + + ++ +NA+LP +I V +L + F
Sbjct: 47 AGRTDTGVHGYGQVIAF--DVPNERMTLE----NIKDALNANLPEDIYVRKVLKVRDKFS 100
Query: 196 PRRECNLRKYSYLLPAE---VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
PR E R Y Y + I + ++ D +I EGEH F + +
Sbjct: 101 PRHEATKRIYHYFIYQNDEPNIFLRDRVWWFPYDLNIEKMRKAAKYLEGEHDFTTFKTGN 160
Query: 253 KYRRKPHKTGRVSKRAKASKDAVFSRVE 280
R P +T + K + + RVE
Sbjct: 161 D-DRNPVRTIYRIRILKMRNNIILIRVE 187
>gi|294946005|ref|XP_002784902.1| hypothetical protein Pmar_PMAR026821 [Perkinsus marinus ATCC 50983]
gi|239898210|gb|EER16698.1| hypothetical protein Pmar_PMAR026821 [Perkinsus marinus ATCC 50983]
Length = 116
Score = 55.8 bits (133), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 59 TLTRPTPNSSD-DKWEPVRKKKVALRVGYVGTDYRGLQMQRDE-HSLSTIEGELETALFK 116
+ T P P + K + K+K AL VG+ GT YRGLQM D + +E +L A+ +
Sbjct: 4 STTSPVPEEAPVAKLQLNAKRKCALVVGFNGTKYRGLQMNADNCDRIDYVESDLLGAMKR 63
Query: 117 AGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKM 154
AG ++ + L +I W RSSRTD GV + ++ K+
Sbjct: 64 AGVVK-PDVVRLDEIQWTRSSRTDAGVSAARIVVSAKI 100
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 28/182 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+K+ALR Y GT Y GLQ +TIE + A+ + + + G IA
Sbjct: 63 RKRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAMLRTKVV--DDIGTADYIA--- 117
Query: 136 SSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKR-----VNAHLPRNIKVFSIL 188
RTDKGVH++ +I L + + D ++ + + +R +N LP +I + S
Sbjct: 118 GGRTDKGVHAVNNVISLFVNSRLSEDEINEN---VTVGERNFVAIINRQLPDDIWITSWA 174
Query: 189 PSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
F R C R Y+Y+ + G++ +L E S++ GEH F N+
Sbjct: 175 QISSDFSARFNCKSRHYNYIFDSS--GLDVELM-KEAASYLI----------GEHDFRNF 221
Query: 249 TE 250
++
Sbjct: 222 SQ 223
>gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 493
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 50/216 (23%)
Query: 63 PTPNSSDDK---WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGG 119
P NSSD + E R++ VA++ Y G Y G R +H TIE L + +
Sbjct: 60 PKENSSDKRIFCMENYRQRMVAMKFLYSGERYCGFA--RQDHIEETIEKYLFDTMQRTKL 117
Query: 120 IRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME--IPPDAWKDDPYG---------- 167
I ++ ++R RTDKGV + +I +K+ +P DA D
Sbjct: 118 I-----TSIDDCCYSRCGRTDKGVSAFGQVIGIKVRSNVPIDAELLDVDSLDQVASGGRV 172
Query: 168 --------------IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNL-RKYSYLLPAE 212
+D A +N LP +I+V+S++ + +F R C+ R Y Y +
Sbjct: 173 RVKTQDGRIRKITEVDYAASLNRTLPSDIRVYSVVNAPNNFSARFNCDRGRSYRYFFMKK 232
Query: 213 VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+ I AA FEG H F N+
Sbjct: 233 DLDIEKMRLAA-------------IGFEGLHDFRNF 255
>gi|379009701|ref|YP_005267514.1| tRNA pseudouridine synthase A [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
gi|375158225|gb|AFA41291.1| tRNA pseudouridine synthase A [Wigglesworthia glossinidia
endosymbiont of Glossina morsitans morsitans (Yale
colony)]
Length = 270
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 26/180 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K A V Y G Y G Q+Q+ ++I+ E+E AL K G + + Y S
Sbjct: 2 QKFAACVQYNGNKYCGWQIQKKS---ASIQIEIENALTKFSGSKITTYC---------SG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD VH++ +I I W VN +LP +I V I+P +++F
Sbjct: 50 RTDAKVHAICQIIHFSTHIIRSNRQWMLG---------VNTYLPYDIAVIWIIPVKKNFH 100
Query: 196 PRRECNLRKYSYLLPAEVI--GINSQLTAAEIDS-HISDFNAILNEFEGEHPFHNYTERS 252
R R+Y Y++ ++ GI + A S ++ N+ G+H F ++ ++
Sbjct: 101 ARYSATSRRYVYVIYNHIVRPGIFQEYCATVFFSLNVKKMQKSANKLIGKHDFTSFRSKN 160
>gi|357419520|ref|YP_004932512.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
gi|355396986|gb|AER66415.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
Length = 250
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 19/131 (14%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+ A++V Y G D+ G Q Q + T++G LE+AL G + YG + R
Sbjct: 3 RYAMQVSYKGKDFSGWQKQPNSR---TVQGVLESALELLAGHPVTVYG---------AGR 50
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TDKGVH+L + + W P + LA VNAHLP++++V + SF R
Sbjct: 51 TDKGVHALGQVASFDLN---RHWA--PEKLLLA--VNAHLPKDVRVMRMRYVDNSFHARY 103
Query: 199 ECNLRKYSYLL 209
R+Y Y +
Sbjct: 104 SALWREYVYFI 114
>gi|350566940|ref|ZP_08935558.1| tRNA pseudouridine synthase A [Peptoniphilus indolicus ATCC 29427]
gi|348659960|gb|EGY76671.1| tRNA pseudouridine synthase A [Peptoniphilus indolicus ATCC 29427]
Length = 243
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ L+V Y+GT+Y G QMQ S +IE EL+ A+ K+ + K+ S RT
Sbjct: 3 ILLKVAYMGTNYHGFQMQP---SCVSIEEELKKAVEKS---------VMHKVKLYYSGRT 50
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
D GVH+ M+ + + ++A+ +N HLP +I V + F R
Sbjct: 51 DAGVHAQGQMVNFYTDTKVEVK-------NMARIINYHLPEDISVLDARRVEEDFHARFS 103
Query: 200 CNLRKYSYLL 209
+ Y Y++
Sbjct: 104 AKGKHYKYIV 113
>gi|348590140|ref|YP_004874602.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
gi|347974044|gb|AEP36579.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis MCE3]
Length = 268
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL + Y G DY+G Q Q + TI+ LE ALFK + N K+ + R
Sbjct: 4 RVALGISYDGRDYQGWQTQPNG---LTIQDFLEAALFK--------FTN-HKVNTICAGR 51
Query: 139 TDKGVHSLATMICLKMEIPPD--AWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH++ ++ E+ + +W + VNAHLP +I+V F
Sbjct: 52 TDTGVHAIGQVVHFDTEVSRELESW---------VRGVNAHLPDSIRVRWAQEVPDEFSA 102
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSH---ISDFNAILNEFEGEHPFHNY 248
R R Y YLL E + A D H I N F G H F ++
Sbjct: 103 RFSATHRTYVYLLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSSF 157
>gi|111023127|ref|YP_706099.1| pseudouridylate synthase [Rhodococcus jostii RHA1]
gi|110822657|gb|ABG97941.1| pseudouridylate synthase [Rhodococcus jostii RHA1]
Length = 297
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+++ L + Y GTD+ G Q + L T+ GE+E K G + + + +
Sbjct: 26 RRLRLDIAYDGTDFSGWARQ---NGLRTVCGEIEE---KLGAVLRT------PLQLTVAG 73
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH AT +++P DA DDP L +R+ LP+++++ I + FD R
Sbjct: 74 RTDAGVH--ATGQVAHVDVPVDALPDDPS--RLVRRLARFLPKDVRIKRIAFAPEHFDAR 129
Query: 198 RECNLRKYSYLLPAEVIGIN 217
R Y Y L + V G +
Sbjct: 130 FSAMRRHYEYRLTSAVYGAD 149
>gi|399055838|ref|ZP_10743488.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|433543260|ref|ZP_20499670.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
gi|398046701|gb|EJL39295.1| pseudouridylate synthase I [Brevibacillus sp. CF112]
gi|432185389|gb|ELK42880.1| tRNA pseudouridine synthase A [Brevibacillus agri BAB-2500]
Length = 244
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K++ +GY GTD+ G Q+Q D+ T++GE+E AL + G + I S
Sbjct: 2 KRLRCVLGYDGTDFSGFQVQPDQ---VTVQGEIEAALKRITG---------EDIQIHGSG 49
Query: 138 RTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I IP D W+ +N LP I + S+ SF
Sbjct: 50 RTDAGVHARGQVIHFDTNSHIPLDKWR---------FVLNNQLPDAIVIRSVEEVAESFH 100
Query: 196 PRRECNLRKYSYLL 209
R + +++Y Y +
Sbjct: 101 ARFDVRVKEYRYCI 114
>gi|300710278|ref|YP_003736092.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|448294604|ref|ZP_21484683.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|299123961|gb|ADJ14300.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
gi|445586281|gb|ELY40563.1| tRNA pseudouridine synthase A [Halalkalicoccus jeotgali B3]
Length = 266
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 42/198 (21%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y G Y G Q Q D + T+EG L AL R + + +A + RTD
Sbjct: 3 AFRIAYDGAPYYGFQRQPD---VETVEGVLFDAL-----DRLVTFEGEKPAGYAAAGRTD 54
Query: 141 KGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
+GV +LA + + + P A+ N+ LP ++ ++ + F R
Sbjct: 55 RGVSALAQTVAFEAPEWLTPAAF-------------NSELPGTVRAWASADAPDDFHARY 101
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ R Y+Y L A A++++ +L+ G H FHN T
Sbjct: 102 DARSRTYAYYLHA---------PGADVEA----IRGVLSRLSGTHDFHNLTPEDG----- 143
Query: 259 HKTGRVSKRAKASKDAVF 276
T R RA+A+++ F
Sbjct: 144 -PTTRTITRARANREGPF 160
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 41/175 (23%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K A ++ Y G ++ G Q Q D+ T+EGE+ AL + G ++ + R
Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQR---TVEGEVINALRRLG---------VENPRLRSAGR 50
Query: 139 TDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ +I E I P + +NA LP +I ++ FDP
Sbjct: 51 TDAGVHAYGQVISFYSEDKIFP-------------RMLNAELPEDITAWAWAKVSEDFDP 97
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
RR R Y+Y++ D IS + E G H F N+T++
Sbjct: 98 RR-AKSRVYTYVMYGS-------------DYDISAMRKAVKELIGVHDFSNFTKK 138
>gi|330837397|ref|YP_004412038.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
gi|329749300|gb|AEC02656.1| tRNA pseudouridine synthase A [Sphaerochaeta coccoides DSM 17374]
Length = 299
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 33/197 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++V + V Y GT Y G Q QR+ S ++ E+E AL++ G + S
Sbjct: 20 RRVRMTVAYDGTGYSGWQHQRNAPS---VQAEIEDALYRLTG---------HSVTVVGSG 67
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+L +C ++P + + + + +NA LP I++ + SF R
Sbjct: 68 RTDSGVHALG-QVC-HFDLPDERFP----AVVFKRALNAFLPPAIRIMDSEETNDSFHAR 121
Query: 198 RECNLRKYSYLLPAEV---------IGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
R+Y YL+ E + + +L + E+ A E G H F +
Sbjct: 122 FSAMAREYRYLIKREADMTPFDSGRVWVVKELPSLEL------LKAHAAEIAGTHDFTTF 175
Query: 249 TERSKYRRKPHKTGRVS 265
T + H+ VS
Sbjct: 176 TAAGDMCERRHRDIYVS 192
>gi|399116028|emb|CCG18832.1| tRNA pseudouridine synthase A [Taylorella asinigenitalis 14/45]
Length = 268
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 74/175 (42%), Gaps = 26/175 (14%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL + Y G DY+G Q Q + TI+ LE ALFK + N K+ + R
Sbjct: 4 RVALGISYDGRDYQGWQTQPNG---LTIQDFLEAALFK--------FTN-NKVNTICAGR 51
Query: 139 TDKGVHSLATMICLKMEIPPD--AWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH++ ++ E+ + +W + VNAHLP +I+V F
Sbjct: 52 TDTGVHAIGQVVHFDTEVTRELESW---------VRGVNAHLPDSIRVRWAQEVPDEFSA 102
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSH---ISDFNAILNEFEGEHPFHNY 248
R R Y YLL E + A D H I N F G H F ++
Sbjct: 103 RFSATHRTYVYLLRNERVLSPIWSGRAGWDFHNLDIEGMNIATQSFIGTHDFSSF 157
>gi|383620985|ref|ZP_09947391.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|448692514|ref|ZP_21696353.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
gi|445787526|gb|EMA38267.1| tRNA pseudouridine synthase A [Halobiforma lacisalsi AJ5]
Length = 366
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGN-----LQKIAWAR 135
A R+ Y GTDY G Q Q S+ T+EG + AL ++ G+ + + + ++ +A
Sbjct: 52 AYRIAYDGTDYHGFQRQ---PSVPTVEGAIFAAL-RSLGVFDPDAADDSGPAVRPAGYAA 107
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
+ RTDKGV ++A I + PD W + +N LP +++ +++ + F
Sbjct: 108 AGRTDKGVSAIAQTIAFEA---PD-WL-------TPRALNGELPADVRAWAVADAPDGFH 156
Query: 196 PRRECNLRKYSYLLPAEVI---------GINSQLTAAEID-------SHISD--FNAILN 237
R+Y+Y L A + G S+ I + +SD A
Sbjct: 157 ATHHARRREYTYQLYAPPLEDDTDGSTPGGGSERRTPPIPPVAPADAARVSDERIQAACR 216
Query: 238 EFEGEHPFHN 247
GEH +HN
Sbjct: 217 ALSGEHDYHN 226
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 10/120 (8%)
Query: 91 YRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMI 150
++G+ Q+D+ + TIEGE+ AL + I++ + +L R RTD+GVHS I
Sbjct: 4 FQGIAFQKDD-KIPTIEGEIYKALLQLRLIKDIDSCDL-----VRCGRTDRGVHSAGNYI 57
Query: 151 CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLP 210
+ + A +PY + + +N LP +I+V + F R +C R Y Y P
Sbjct: 58 SVNLR--TRAKNLEPY--NYMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFP 113
>gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)]
gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
gi|8134769|sp|O86776.1|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)]
gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
Length = 284
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G+++ G Q T++GE+E AL RE+ + + R
Sbjct: 11 RVRLDLSYDGSEFSGWAKQ--AGGRRTVQGEIEDALRTVTRSRETYELTV-------AGR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + + L KR+ LPR+++V+++ + F+ R
Sbjct: 62 TDAGVHARGQVA--HVDLPREVWAE--HHVKLLKRLAGRLPRDVRVWALREAPSGFNARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + H + NA GEH F Y ++
Sbjct: 118 SAVWRRYAYRVTDNPGGVDPLLR-GHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKK 174
>gi|416189335|ref|ZP_11615257.1| tRNA pseudouridine synthase A [Neisseria meningitidis M0579]
gi|433470184|ref|ZP_20427589.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 98080]
gi|325135431|gb|EGC58051.1| tRNA pseudouridine synthase A [Neisseria meningitidis M0579]
gi|432200718|gb|ELK56807.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 98080]
Length = 265
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|424845163|ref|ZP_18269774.1| pseudouridylate synthase I [Jonquetella anthropi DSM 22815]
gi|363986601|gb|EHM13431.1| pseudouridylate synthase I [Jonquetella anthropi DSM 22815]
Length = 250
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL--FKAGGIRESNYGNLQKIAWARS 136
+ AL V Y G+ G Q+Q +S+++GEL AL G + + G
Sbjct: 3 RYALTVAYDGSKLFGWQIQ---PGVSSVQGELTRALSLLNGGPVTVTGAG---------- 49
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
RTD GVH+ + + + P W+ D L VNA++P I V + P SFD
Sbjct: 50 -RTDAGVHARGQVASVWLNRP---WRGD----KLRLAVNANVPDGICVSRVRPCSPSFDA 101
Query: 197 RRECNLRKYSYLL------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
RR+ R Y Y + P ++ + D + F A EG H F +
Sbjct: 102 RRDAQWRLYRYCVWLASWCPPQIEPWVWWNKVSHWDMDL--FAAGCRLLEGRHDFSAFCR 159
Query: 251 RSKYRRKPHK 260
+S+ P +
Sbjct: 160 QSEVPENPWR 169
>gi|421558010|ref|ZP_16003904.1| tRNA pseudouridine synthase A [Neisseria meningitidis 80179]
gi|402333181|gb|EJU68492.1| tRNA pseudouridine synthase A [Neisseria meningitidis 80179]
Length = 265
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GIPTVQAALETALAQIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------IRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q + + T+E EL AL I + + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQPN---VETVEKELFKALRNLSIIESPKSAD-----YTCAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ E P + + + +N+ LP I ++ FD RR
Sbjct: 54 TDAGVHALGQVVAFDTEKP---------NLAIPRVINSELPPAIWAWAHAEVPYYFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R Y Y++ E I+ A+++ DF
Sbjct: 105 SAVSRHYHYVMSGEDYDISKMREASKLLLGTHDF 138
>gi|291460751|ref|ZP_06600141.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291416710|gb|EFE90429.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 266
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 22/132 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+++ L + Y GT+Y G Q Q + STIEGEL AL S ++I +S
Sbjct: 2 RRIRLDIAYDGTNYHGWQYQEGQ---STIEGELRRAL--------SELLPGEEIGLTGAS 50
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ C K IP G + + +N LP +I++ + + F
Sbjct: 51 RTDAGVHARQNTACFDTKSRIP---------GANFSMALNCRLPEDIRILRSMEAGEDFH 101
Query: 196 PRRECNLRKYSY 207
PR + + Y Y
Sbjct: 102 PRFSPHKKVYEY 113
>gi|407416983|gb|EKF37879.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 459
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+R+ Y G Y GL Q E + +T+E + AL I + +L AR
Sbjct: 70 RKVAIRLAYHGHLYDGLAKQ--EETSNTVEAYVVAALKHVRLIPQDGPSDL-----ARCG 122
Query: 138 RTDKGVHSLATMICLKMEI---PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV +L L + P D+ + P +D +N+ LP I++ SF
Sbjct: 123 RTDKGVSALGNAFSLTVRASSWPTDSPQKPP--LDYCAMLNSALPVTIRIVGWAYVDDSF 180
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
D R C R Y Y + + + AA +G H F N+ +
Sbjct: 181 DARFSCVGRTYRYYFCHRGLNVKAMGDAAA-------------RLKGVHNFRNFCK 223
>gi|226322792|ref|ZP_03798310.1| hypothetical protein COPCOM_00564 [Coprococcus comes ATCC 27758]
gi|225208773|gb|EEG91127.1| tRNA pseudouridine synthase A [Coprococcus comes ATCC 27758]
Length = 259
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 77/175 (44%), Gaps = 40/175 (22%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ V Y GT YRG QR E++ T++G LE + + G +K + S RTD
Sbjct: 6 ITVAYDGTAYRG--WQRQENTELTVQGILERRISEIAG---------KKTVVSGSGRTDS 54
Query: 142 GVHSLAT--MICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR- 198
GVH+L + L+ EI D++K K++NA LP +I+V I +R F R+
Sbjct: 55 GVHALGQECSLYLEQEIDMDSFK---------KQLNALLPEDIRVLDISREKRDFHARKS 105
Query: 199 ----------------ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN 237
E RKY + P V I + AAE DF+A +
Sbjct: 106 AVGKCYEYQIDLRDKMEVFHRKYRFHFPHPV-DIAAMEQAAEYLMGTHDFSAFTD 159
>gi|351703596|gb|EHB06515.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 448
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 30 QRHVALRIAYLGWAYQGFASQ--ENTDNTIEEKLFVALTKTRLVESRQTSN-----YHRC 82
Query: 137 SRTDKGVHSLATMICLKM--EIP----------PDAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P D DD ++ LP +I+V
Sbjct: 83 GRTDKGVSAFGQVISLDLRSQFPRGKDSKDLNLKDEVSDDAKEARYTHILSRVLPPDIRV 142
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C Y Y P A+++S ++ A ++ G H
Sbjct: 143 LAWAPVECSFSARFSCLEHTYHYFFP-----------CADLNSVRMNYAA--QKYVGTHV 189
Query: 245 FHN 247
F N
Sbjct: 190 FRN 192
>gi|254804153|ref|YP_003082374.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14]
gi|254667695|emb|CBA03553.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha14]
Length = 265
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAARPQQAW---------IRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|448349227|ref|ZP_21538070.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
gi|445641013|gb|ELY94097.1| tRNA pseudouridine synthase A [Natrialba taiwanensis DSM 12281]
Length = 287
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 95/219 (43%), Gaps = 36/219 (16%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GT Y G Q Q D ++T+E EL AL + + + + + +A + RTD
Sbjct: 3 AFRLAYDGTAYHGFQRQPD---VATVEDELFAALESLSVL--ATHAD-KPTGYAAAGRTD 56
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA + PD W + +N+ LP +I+ ++ + F
Sbjct: 57 AGVSALAQTVAFDA---PD-WL-------TPRALNSDLPADIRAWAAADAPDEFHATHHA 105
Query: 201 NLRKYSYLL---PAEVIGINSQL--TAAEIDSHISD--FNAILNEFEGEHPFHNYTERSK 253
R+Y+Y L PA+ + S + + D + D F + G+H FHN T +
Sbjct: 106 RRREYTYQLYAPPADDVPRRSGTADSTGDPDRAVDDDRFQRACHALSGDHDFHNLTPDDR 165
Query: 254 -YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSK 291
R P T A++DA F V + G GF++
Sbjct: 166 NTERSPTLT--------ATRDAEFIVVTVTAG---GFAR 193
>gi|448612573|ref|ZP_21662595.1| tRNA pseudouridine synthase A [Haloferax mucosum ATCC BAA-1512]
gi|445741421|gb|ELZ92923.1| tRNA pseudouridine synthase A [Haloferax mucosum ATCC BAA-1512]
Length = 270
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 75/177 (42%), Gaps = 31/177 (17%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A RV Y G + G Q Q D + T+E + A +A G+ +S+ A+A + RTD
Sbjct: 3 AFRVAYDGRPFHGFQRQPD---VPTVEDTIFDAC-RALGVCDSD---TDPTAYAAAGRTD 55
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA + + PD W + +N+ LP ++ ++ F R
Sbjct: 56 AGVSALAQTVAFEC---PD-WC-------TPRALNSELPATVRAWASADVPDDFHARHRP 104
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT--ERSKYR 255
R+Y Y L A + AA +L+E GEH FHN T ER R
Sbjct: 105 TRREYVYDLYAPTDEFDDDRAAA-----------VLDELRGEHDFHNLTPDERGTVR 150
>gi|448593516|ref|ZP_21652471.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
gi|445729297|gb|ELZ80893.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
Length = 270
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 71/169 (42%), Gaps = 29/169 (17%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A RV Y G Y G Q Q D + T+E L A + GI +++ + +A S RTD
Sbjct: 3 AFRVAYDGRPYHGFQRQPD---VPTVEDTLLDAC-RTLGICDADE---VPVGYAASGRTD 55
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA + E P W + +NA LP I+ ++ F R
Sbjct: 56 AGVSALAQTVAF--ECP--EWC-------TPRALNAELPGTIRAWASADVPDDFHARHHP 104
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R+Y Y L A ++ L A + +E GEH FHN T
Sbjct: 105 SRREYVYDLHAPSEAVDDDLAA-----------TVFDELCGEHDFHNLT 142
>gi|342215554|ref|ZP_08708201.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341586444|gb|EGS29844.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 245
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ + L + Y GT+Y G Q D+ L T+EG+++ AL E+ + LQ+I +
Sbjct: 3 RNLKLTLAYDGTNYHGYQ---DQPGLKTVEGKVKEAL-------EATF--LQEIDLKSAG 50
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVHS ++ K++ D +L + VN +LP +I V + F R
Sbjct: 51 RTDKGVHSQGQVVNFKVDTSIDLG-------NLPRVVNFNLPPDISVLGVQVVDDDFHAR 103
Query: 198 RECNLRKYSYLL 209
+ Y Y++
Sbjct: 104 FSAKAKLYRYVI 115
>gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis]
Length = 593
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 17/149 (11%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGN 127
D + +++ VAL + Y+G Y G R EH+ TIEG L AL + E+++
Sbjct: 70 DLDFSAYQQRYVALELLYLGHAYGGFA--RQEHTEQTIEGHLFAALRTTRLVPAEASW-- 125
Query: 128 LQKIAWARSSRTDKGVHSLATMICLKM-------EIPPDAWKDDPYGIDLAKRVNAHLPR 180
Q++ ++R RTDKGV +L ++ L + E+ P+A + +D +N LP+
Sbjct: 126 -QELRYSRGGRTDKGVSALGQVVALLLRSAARTGEVQPEADVE----LDYPSLLNRVLPQ 180
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLL 209
+I+V F R R+Y YL+
Sbjct: 181 DIRVLGWADVPDDFSARFSAQYREYKYLI 209
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 89/221 (40%), Gaps = 49/221 (22%)
Query: 60 LTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGG 119
L P ++ + K+ VAL+V Y G + G + H T+E E+ AL K
Sbjct: 83 LKGKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFA--SEAHMDPTVESEIFKALEKTW- 139
Query: 120 IRESNYGNLQKIAWARSSRTDKGVHSLATMICL----------------KMEIPPDAW-- 161
G+ +++ ++R RTDKGV S+ +I L K +P + +
Sbjct: 140 ---LAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYEE 196
Query: 162 ----KDDPYG--------IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLL 209
KD+ G ID + +N LP++I+V P F R C R+Y Y
Sbjct: 197 RREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFF 256
Query: 210 PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
+ I + +A + +F GEH F N+ +
Sbjct: 257 WRGNLNILAMESAGK-------------KFVGEHDFRNFCK 284
>gi|427718730|ref|YP_007066724.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 7507]
gi|427351166|gb|AFY33890.1| tRNA pseudouridine synthase A [Calothrix sp. PCC 7507]
Length = 284
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D +P +VAL + Y GT + G Q Q + T++ E+ETA+ + G + +G
Sbjct: 3 DSHQPTETHRVALVIQYQGTHFHGWQRQNQQ---RTVQEEVETAIAQVLGYHVTLHG--- 56
Query: 130 KIAWARSSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
+ RTD GVH+ A + + IPP W A +N++LP++I + +
Sbjct: 57 ------AGRTDAGVHAAAQVAHFEATGLIPPHKW---------ATILNSYLPQDILIRAS 101
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAE 212
+ + R R+Y Y L E
Sbjct: 102 ASVESRWHARFSAAYRRYRYTLFTE 126
>gi|150020829|ref|YP_001306183.1| tRNA pseudouridine synthase ACD [Thermosipho melanesiensis BI429]
gi|166229846|sp|A6LLJ7.1|TRUA_THEM4 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|149793350|gb|ABR30798.1| tRNA pseudouridine synthase A [Thermosipho melanesiensis BI429]
Length = 244
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 27/208 (12%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL---FKAGGIRESNYGNLQKIAWA 134
K+ A+ Y GT++ G Q Q + + T++GELE AL FK ++I
Sbjct: 2 KRFAIEFSYDGTNFFGYQGQPN---VRTVQGELEKALERIFK------------ERIFTQ 46
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+ RTD GVH+ + I D ID+ +NA+LP +I V +++F
Sbjct: 47 GAGRTDAGVHANGQVAAFNCPI------DRLAAIDIKNALNANLPEDIYVKKAWEVEKNF 100
Query: 195 DPRRECNLRKYSYLLPAEVIGI--NSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
+PR R Y YL+ + + + + +I EGEH F ++ ++
Sbjct: 101 NPRFRAKKRIYHYLVSTNEKDVFKRNYVWHFKYKLNIEAMRIAARYLEGEHDFSSF-KKG 159
Query: 253 KYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ P +T + K+ + RVE
Sbjct: 160 NDKKNPIRTVYRIRILNVKKELILIRVE 187
>gi|225175641|ref|ZP_03729635.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
gi|225168970|gb|EEG77770.1| tRNA pseudouridine synthase A [Dethiobacter alkaliphilus AHT 1]
Length = 246
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ L +GY GT Y G Q+Q++ T++ +LE A+ K G QK+ S RT
Sbjct: 4 IKLTLGYDGTGYHGFQLQKNA---VTVQQKLEEAIEKVMG---------QKVRITASGRT 51
Query: 140 DKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
D GVH+ +I + IPP + +NA LPR+I +++ SF R
Sbjct: 52 DTGVHATGQVINFFAQTGIPPQ---------RIPHALNAVLPRDIVIYAAEIVSDSFHAR 102
Query: 198 RECNLRKYSYLL 209
+ + Y+Y +
Sbjct: 103 FDAVGKTYTYTI 114
>gi|424863441|ref|ZP_18287354.1| tRNA pseudouridine synthase A [SAR86 cluster bacterium SAR86A]
gi|400758062|gb|EJP72273.1| tRNA pseudouridine synthase A [SAR86 cluster bacterium SAR86A]
Length = 261
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 22/186 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A + Y GT++ G Q Q + TI+ LE +L K + I S R
Sbjct: 2 RLAATLEYDGTEFSGFQRQNNAE---TIQEHLEVSLKKITN---------ENITINYSGR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+++ + K I D I+ K +N++LP++I V I Q F+ R
Sbjct: 50 TDAGVHAISQVFDFKTNIERDE-------INWIKGINSNLPKSISVKEICSVQDDFNSRF 102
Query: 199 ECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYR 255
R YSY++ + + N + I N L F GE+ F ++ +
Sbjct: 103 SAIERTYSYVIYNSKEKPLFFNDFCCWVTNNLDIKKMNDQLAMFIGENDFSSFRSINCNS 162
Query: 256 RKPHKT 261
+ P KT
Sbjct: 163 KNPVKT 168
>gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
Length = 265
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 32/182 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L Y G++Y G Q+Q + +TI+ E+E +L K N + + S R
Sbjct: 2 RVVLLCRYDGSNYHGFQIQPNN---NTIQEEIEKSLKKI---------NKKDVRLYMSGR 49
Query: 139 TDKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ ++ + IP +AW K +NA +P++I++ + F
Sbjct: 50 TDSGVHAYGQVLHFDTDLNIPDEAW---------VKALNATIPKDIRIVGATSASEDFHV 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQ-LTAAEIDSHISDFN-----AILNEFEGEHPFHNYTE 250
R + Y Y L IG + H DFN L F GEH F ++
Sbjct: 101 RYNSTQKTYYYKLH---IGREVDPFLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCS 157
Query: 251 RS 252
++
Sbjct: 158 KN 159
>gi|156502494|ref|YP_001428559.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290953826|ref|ZP_06558447.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica URFT1]
gi|423050756|ref|YP_007009190.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
gi|166228698|sp|A7NCA0.1|TRUA_FRATF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|156253097|gb|ABU61603.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|421951478|gb|AFX70727.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica F92]
Length = 258
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HSLS ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSLS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSNAYRPLSAWQ---------RGVNALLPQDIKILAVQQVNNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>gi|384248918|gb|EIE22401.1| tRNA pseudouridine synthase, partial [Coccomyxa subellipsoidea
C-169]
Length = 277
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 29/180 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+++ VAL V YVG Y G Q D S T+EG L A+ K I E + + ++R
Sbjct: 9 QRRYVALGVFYVGWRYHGFASQAD--SEETVEGHLFRAMRKTKLIPEGL--GWEGLGYSR 64
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDP-YGI----DLAKRVNAHLPRNIKVFSILPS 190
RTDKGV +L ++ L + A D+P G+ D A +N LP +I+V P
Sbjct: 65 CGRTDKGVSALGQVVALWLRSGAKA--DEPALGVDEEMDYAVTLNRALPDDIRVLGWTPV 122
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F R +S D ++ F G+H F N+ +
Sbjct: 123 PEGFSAR------------------CSSYFIVQRGDLDLAAMQEAAGHFVGDHDFRNFCK 164
>gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 409
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+R+ Y G Y GL Q E + +T+E + AL I + I AR
Sbjct: 20 RKVAIRLAYHGHLYDGLAKQ--EETSNTVEAYVVAALKHVRLIPQDG-----PIDLARCG 72
Query: 138 RTDKGVHSLATMICLKMEI---PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV +L + L + P D+ + P +D +N+ LP I++ +F
Sbjct: 73 RTDKGVSALGNVFSLTVRASSWPTDSPQKPP--LDYCAMLNSALPVTIRIVGWAYVDDTF 130
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
D R C R Y Y + + + AA +G H F N+ +
Sbjct: 131 DARFSCVGRTYRYYFCHRGLNVEAMGNAAA-------------RLKGVHNFRNFCK 173
>gi|430375560|ref|ZP_19429963.1| tRNA pseudouridine synthase A [Moraxella macacae 0408225]
gi|429540791|gb|ELA08819.1| tRNA pseudouridine synthase A [Moraxella macacae 0408225]
Length = 268
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 22/133 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K A+ + ++GT YRG Q Q+ +H +TI+ LETA K + I S
Sbjct: 3 KTYAINLEFIGTHYRGWQRQQHDH--TTIQQTLETAFSKVAN---------EPIEIIASG 51
Query: 138 RTDKGVHS--LATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + C P W + VNA LP +I + ++ P F
Sbjct: 52 RTDAGVHASNMIAHFCTNANRDPYNW---------LRGVNALLPNDIALRAVTPMSDEFH 102
Query: 196 PRRECNLRKYSYL 208
R R+Y Y+
Sbjct: 103 ARFLAIARRYRYV 115
>gi|227871757|ref|ZP_03990163.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
gi|227842397|gb|EEJ52621.1| tRNA-pseudouridine synthase I [Oribacterium sinus F0268]
Length = 265
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 18/131 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++++ L++ Y GT Y G Q Q LSTI G +E L + N+ +
Sbjct: 9 EQRIVLKLAYEGTSYHGFQKQ---EGLSTIAGTVEEQLRNLFPWKMENF--------IGA 57
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
SRTD+GVH+L ++ E G + + +N++LP +I+V Q+ F P
Sbjct: 58 SRTDQGVHALGNLLSFDTE-------GKVSGEQILRALNSYLPEDIRVMEAYSVQQDFHP 110
Query: 197 RRECNLRKYSY 207
R + + Y Y
Sbjct: 111 RFTPHRKAYRY 121
>gi|448689644|ref|ZP_21695228.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
gi|445777915|gb|EMA28875.1| tRNA pseudouridine synthase A [Haloarcula japonica DSM 6131]
Length = 275
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A RV Y G Y G Q Q D + T+EG L +AL + G+ E G ++ +A + RTD
Sbjct: 3 AYRVAYDGRPYHGFQRQPD---VDTVEGRLRSALVRL-GVCERGEGLPER--YAAAGRTD 56
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRRE 199
GV + A I AW L+ V N LP +++V++ F +
Sbjct: 57 AGVSARAQTIAFDAP----AW--------LSPAVFNGQLPDDVRVWASADVTEGFHATYD 104
Query: 200 CNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R Y+Y L A ++ ++ D +D ++ G H FHN T
Sbjct: 105 ATQRTYTYYLYAPT-DVDRFVSGPVDDQRWAD---AVDALAGTHDFHNLT 150
>gi|224531952|ref|ZP_03672584.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116]
gi|224511417|gb|EEF81823.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116]
Length = 246
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+ + Y G+ Y G Q+Q + T++GE+E AL K + + S
Sbjct: 2 RKILAEIAYDGSIYHGFQIQPKK---PTVQGEIEKALMKINKKKIKIHS---------SG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKGQIITFDININIQLN-------NLKKALNAILLKNSIKILKLKYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKY Y + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAKKRKYRYCILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIHFAKFKKRGK 181
>gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760]
gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 84/219 (38%), Gaps = 50/219 (22%)
Query: 69 DDKWEPVRKKKVALRVGYVGTDYRGLQ--MQRDEHSLS--------TIEGELETALFKAG 118
D + + + +A+ + Y+G DY G+Q + D + TIE +L ALFK
Sbjct: 27 DFNFNNYKTRHIAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEYQLFKALFKTR 86
Query: 119 GIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAW-----KDDPY------- 166
I+ N + + R RTDKGV + ++ D W KD+
Sbjct: 87 LIQ-----NTKDCKYNRCGRTDKGVSAFGQVV--------DLWVRSNLKDETILYTKREG 133
Query: 167 GIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEID 226
+D + +N LP +I+ F+ R C R Y Y + AA++
Sbjct: 134 ELDYCRMLNGLLPIDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQL- 192
Query: 227 SHISDFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVS 265
F GEH F N+ ++ PH RV+
Sbjct: 193 ------------FLGEHDFTNFCKKDP--AVPHCIRRVN 217
>gi|226940175|ref|YP_002795248.1| tRNA pseudouridine synthase A [Laribacter hongkongensis HLHK9]
gi|226715101|gb|ACO74239.1| TruA [Laribacter hongkongensis HLHK9]
Length = 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 87/220 (39%), Gaps = 40/220 (18%)
Query: 54 PSVSHTLTRPTPNSSDD-KWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELET 112
P+ S T R P S D EPV ++AL + Y G + G Q Q D+ T++G LE
Sbjct: 2 PAFSLT-GRAGPCSGDGCAGEPVDGMRIALGLEYDGRGFAGWQRQPDQ---DTVQGALEG 57
Query: 113 ALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDL 170
AL + G ++ + RTD GVH+ ++ +E P AW
Sbjct: 58 ALSQIAG---------HPVSVLAAGRTDAGVHASQQVVHFDTGVERPLTAW--------- 99
Query: 171 AKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHIS 230
+ VN LP + V + P F R R YSY L +N + A +
Sbjct: 100 VRGVNRFLPPGVAVLWVQPVADDFHARFSACSRSYSYYL------MNHPVRPALGAGRVG 153
Query: 231 DFNAILNE---------FEGEHPFHNYTERSKYRRKPHKT 261
F+A L+ G+H F ++ + P KT
Sbjct: 154 WFHAPLDVPAMQAAAGLLLGQHDFSSFRAAECQAKTPVKT 193
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y G +Y GL Q L T+E L A K + L W R
Sbjct: 57 RRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDK--GLDGCGWERC 114
Query: 137 SRTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDL--AKRVNAHLPRNIKVFSILPSQR 192
RTD+GV + ++ L + + + KD +L +N LP I+V + P
Sbjct: 115 GRTDRGVSAAGQVVSLWVRSALDENRLKDAETRSELRYVSILNRVLPPTIRVLAWSPISS 174
Query: 193 SFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+F R C R Y Y + + + AA+ GEH F N
Sbjct: 175 TFSARFNCQSRHYKYFFSPQELDLGLMQQAAD-------------RLVGEHDFRN 216
>gi|54114177|gb|AAV29722.1| NT02FT0202 [synthetic construct]
Length = 258
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 23/130 (17%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
L++GY G +Y G QR HS S ++ ELE AL K Q I + RTD
Sbjct: 6 LQIGYFGKNYCG--WQRQSHSPS-VQEELEKALSKIAN---------QNIEVTCAGRTDT 53
Query: 142 GVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRE 199
GVH+ + ++ + P AW+ + VNA LP++IK+ ++ +F+ R
Sbjct: 54 GVHATSQIVNFYSNADRPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFNSRFT 104
Query: 200 CNLRKYSYLL 209
R Y+Y++
Sbjct: 105 AINRTYNYII 114
>gi|118594739|ref|ZP_01552086.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
gi|118440517|gb|EAV47144.1| tRNA pseudouridine synthase A [Methylophilales bacterium HTCC2181]
Length = 264
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 78/190 (41%), Gaps = 30/190 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A V Y G + G Q Q D + TI+G +E+AL + + S R
Sbjct: 2 RIACSVSYNGYGFSGWQKQPD---VKTIQGLIESALTEIAK---------DTVITHASGR 49
Query: 139 TDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+L +I P AW K VNA LP +IKV SF
Sbjct: 50 TDSGVHALGQIIHFDTTKNRPLTAW---------VKGVNAFLPSSIKVRWAKNISESFHA 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQL---TAAEIDSHISDFN--AILNEFEGEHPFHNYTER 251
R R+Y YLL + NS + TA + D+N A FEG H F ++
Sbjct: 101 RHSVLEREYQYLLIKDT--NNSAIFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSS 158
Query: 252 SKYRRKPHKT 261
+ P +T
Sbjct: 159 ECQAKSPVRT 168
>gi|89256403|ref|YP_513765.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115314847|ref|YP_763570.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica OSU18]
gi|254367741|ref|ZP_04983762.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|422938792|ref|YP_007011939.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
gi|122325138|sp|Q0BLV1.1|TRUA_FRATO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|122999741|sp|Q2A3D7.1|TRUA_FRATH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|89144234|emb|CAJ79507.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica LVS]
gi|115129746|gb|ABI82933.1| tRNA-pseudouridine synthase I [Francisella tularensis subsp.
holarctica OSU18]
gi|134253552|gb|EBA52646.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica 257]
gi|407293943|gb|AFT92849.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
holarctica FSC200]
Length = 258
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HSLS ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSLS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSNAYRPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 34/185 (18%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALRIAYLGWGYQGFASQ--ENTSNTIEEKLFEALKKTRLVDSRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM------EIPPDAWKDDPYG--------IDLAKRVNAHLPRNI 182
RTDKGV + +I L + E + D G + +N LP +I
Sbjct: 116 GRTDKGVSAFGQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDI 175
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGE 242
+V + P + F R C R Y Y P A++D ++ A + G
Sbjct: 176 RVLAWAPVEPDFSARFSCLKRTYRYFFP-----------CADLD--VALMQAAAQRYVGT 222
Query: 243 HPFHN 247
H F N
Sbjct: 223 HDFRN 227
>gi|407035846|gb|EKE37872.1| pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 366
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 48/198 (24%)
Query: 76 RKKKVALRVGYVGTDYRGLQ--MQRDEHSLS--------TIEGELETALFKAGGIRESNY 125
+ + +A+ + Y+G DY G+Q + D + TIE +L ALFK I+
Sbjct: 34 KTRHIAIHLTYIGIDYNGIQCTLLNDVTDATFDSVVNDGTIEYQLFKALFKTRLIQ---- 89
Query: 126 GNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAW-----KDDPY-------GIDLAKR 173
N + + R RTDKGV + ++ D W KD+ +D +
Sbjct: 90 -NTKDCKYNRCGRTDKGVSAFGQVV--------DLWVRSNLKDETILYTKREGELDYCRM 140
Query: 174 VNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
+N LP +I+ F+ R C R Y Y + AA++
Sbjct: 141 LNGLLPTDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAAQL-------- 192
Query: 234 AILNEFEGEHPFHNYTER 251
F GEH F N+ ++
Sbjct: 193 -----FLGEHDFTNFCKK 205
>gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
Length = 287
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G D+ G QR +L T++GELE+AL ++E + + R
Sbjct: 11 RVRLDLSYDGKDFSGWAKQR---TLRTVQGELESALQTVMRLKEP-------VELTVAGR 60
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + + ++ + W + + L +R+ LP +I+V+ + F+ R
Sbjct: 61 TDAGVHARGQVA--QFDLAEEVWAE--HHDKLLRRLAGRLPHDIRVWKAAEAPEGFNARF 116
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + H + N GEH F Y ++
Sbjct: 117 SAIWRRYAYRVGDHRAGVDP-LRRGHVLWHQWPLDVDAMNEAAAALVGEHDFAAYCKK 173
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE L AL K I N + R
Sbjct: 60 RRHVALRIAYLGWGYQGFASQ--ENTNNTIEERLFEALTKTRLIERRQTAN-----YHRC 112
Query: 137 SRTDKGVHSLATMICLKM-----------EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVF 185
RTDKGV + +I L + E D I +N LP +I+V
Sbjct: 113 GRTDKGVSAFGQVISLDLRSQTVRGGQEEEGSKDRMDARTAEIRYTHILNRVLPPDIRVL 172
Query: 186 SILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI 235
+ P F R C R Y Y P + + + AA+ DF +
Sbjct: 173 AWAPVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNL 222
>gi|225075428|ref|ZP_03718627.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens
NRL30031/H210]
gi|224953246|gb|EEG34455.1| hypothetical protein NEIFLAOT_00433 [Neisseria flavescens
NRL30031/H210]
Length = 281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 84/202 (41%), Gaps = 29/202 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q + L T++ LE AL G ++I +
Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGD--LPTVQTALEQALSSIAG---------EQINTIVAG 61
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A ++ + P AW + VNAHLP + V F
Sbjct: 62 RTDTGVHATAQVVHFDTSVSRPEQAW---------VRGVNAHLPDGVAVLVAQKVAPHFH 112
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHIS-DFNAILNE---FEGEHPFHNYTE 250
R + R Y YLL E + S L + +H+ D N + EGEH F ++
Sbjct: 113 ARFDAYGRHYRYLL--ESSPVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRA 170
Query: 251 RSKYRRKPHKTGRVSKRAKASK 272
+ P KT +K + S+
Sbjct: 171 AECQAKSPVKTLYSTKISGTSR 192
>gi|397736547|ref|ZP_10503229.1| tRNA pseudouridine synthase A [Rhodococcus sp. JVH1]
gi|396927737|gb|EJI94964.1| tRNA pseudouridine synthase A [Rhodococcus sp. JVH1]
Length = 270
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
L + Y GTD+ G Q + L T+ GE+E K G + + + + RTD
Sbjct: 3 LDIAYDGTDFSGWARQ---NGLRTVCGEIEE---KLGAVLRT------PLQLTVAGRTDA 50
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH AT +++P DA DDP L +R+ LP+++++ I + FD R
Sbjct: 51 GVH--ATGQVAHVDVPVDALPDDPS--RLVRRLARFLPKDVRIKRIAFAPEHFDARFSAM 106
Query: 202 LRKYSYLLPAEVIGIN 217
R Y Y L + V G +
Sbjct: 107 RRHYEYRLTSAVYGAD 122
>gi|336254963|ref|YP_004598070.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
gi|335338952|gb|AEH38191.1| tRNA pseudouridine synthase A [Halopiger xanaduensis SH-6]
Length = 281
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GTDY G Q Q D + T+E + AL + + + +A + RTD
Sbjct: 6 AFRLAYDGTDYYGFQRQPD---VPTVEDAVFDALRS---LEVLDQDADKPDGYAAAGRTD 59
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
+GV +LA I + PD W + + +NA LP +++ ++ + F
Sbjct: 60 RGVSALAQTIAFEA---PD-WLE-------PRALNAELPADVRAWASADAPDGFHATHHA 108
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R+Y+Y L A ++ + F A + G H FHN T
Sbjct: 109 SRREYTYHLHAPPSSVDDER-----------FVAACDALSGPHDFHNLT 146
>gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680]
gi|38258718|sp|Q82DM1.1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680]
Length = 285
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GT++ G Q T++GE+E AL E+ Y + R
Sbjct: 11 RVRLDLSYDGTEFSGWAKQ--AAGRRTVQGEIEDALRTVTRSGETTY------ELTVAGR 62
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L KR+ LP++++V+S+ + F+ R
Sbjct: 63 TDAGVHARGQVA--HVDLPGELWAE--HQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARF 118
Query: 199 ECNLRKYSYLLPAEVIGIN----SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ S + + + N GEH F Y ++
Sbjct: 119 SAIWRRYAYRVTDNTGGVDPLLRSHVLWHDWPLDVDAMNEAARRLVGEHDFAAYCKK 175
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 24/184 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLS---TIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ +AL V Y G DY G Q ++ + + TIEG L AL + I + + +
Sbjct: 16 RHIALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADD--ATWTDVDYT 73
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAW--------KDDPYGIDLAKRVNAHLPRNIKVFS 186
R RTD GV ++ ++ L+ + D +D +N LP +I+V
Sbjct: 74 RCGRTDAGVSAMGQLVSLRARSRGTRYTPPSPPPPAKDADELDYPSILNRALPDDIRVTG 133
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFH 246
+F R +C R Y Y G++ + EGEH F
Sbjct: 134 WCYVDEAFSARFDCEWRHYKYFFTLHDGGLD-----------LEKMRDAARRLEGEHDFR 182
Query: 247 NYTE 250
N+ +
Sbjct: 183 NFCK 186
>gi|410658499|ref|YP_006910870.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|410661486|ref|YP_006913857.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
gi|409020854|gb|AFV02885.1| tRNA pseudouridine synthase A [Dehalobacter sp. DCA]
gi|409023842|gb|AFV05872.1| tRNA pseudouridine synthase A [Dehalobacter sp. CF]
Length = 286
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+ + + LR+ Y GT+Y G Q Q +EH TI+GELE K ++I
Sbjct: 28 KMRNILLRLAYDGTNYHGFQRQPEEHG-QTIQGELEKVWKKLFA---------EEIKITT 77
Query: 136 SSRTDKGVHSLATMI--CLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ +I C + IP + + K +N+ LP +I++
Sbjct: 78 AGRTDTGVHAAGQVINFCSEARIPQE---------KIPKAMNSILPYDIRIREARDMPED 128
Query: 194 FDPRRECNLRKYSY 207
F R+ ++Y Y
Sbjct: 129 FSARKSAKWKRYDY 142
>gi|440751375|ref|ZP_20930608.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
gi|436480017|gb|ELP36282.1| tRNA pseudouridine synthase A [Mariniradius saccharolyticus AK6]
Length = 250
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K++ L + Y G +Y G Q+Q + H T++ ELE A+ G Q +
Sbjct: 1 MEKRRYFLELAYRGGNYHGWQIQGNAH---TVQAELEKAIHTVLG---------QPVGIM 48
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
S RTD GVH+ ++ W+ + G L + +N LP++I +F + +
Sbjct: 49 GSGRTDTGVHA-------SFQVAHMDWEGELDGAHLVRSLNGILPKDISIFRMREVKADA 101
Query: 195 DPRRECNLRKYSY 207
R + R Y+Y
Sbjct: 102 HARFDAKWRSYTY 114
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 47/175 (26%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI--RESNYGNLQKIAWAR 135
+ +A+ + Y+G D++G Q D + TIEG L AL K I R S+ +++R
Sbjct: 79 RHIAIELSYLGWDFKGFASQEDTNE--TIEGHLFAALSKTCLIPSRASS-------SYSR 129
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
+RTDKGV +L ++ L+ E+P + +NA LP I+ +
Sbjct: 130 CARTDKGVSALGQVVSLR-ELP------------YLQMINALLPPTIRAIAWFA------ 170
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
C++R Y Y + I AA++ EG H F N+ +
Sbjct: 171 ----CSMRSYKYFFVRADMNIEGMRAAAKL-------------LEGSHDFRNFCK 208
>gi|222480083|ref|YP_002566320.1| tRNA pseudouridine synthase A [Halorubrum lacusprofundi ATCC 49239]
gi|222452985|gb|ACM57250.1| tRNA pseudouridine synthase [Halorubrum lacusprofundi ATCC 49239]
Length = 293
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 72/171 (42%), Gaps = 20/171 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H+ +T+EG L AL K G + R + +A + RT
Sbjct: 10 AFRVAYDGREYAGFQRQ--PHA-TTVEGTLLRALAKHGILDRGDGPTHATPPGYAAAGRT 66
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + + PD W L R N HLP +++V++ F
Sbjct: 67 DAGVSAVAQTVAFEA---PD-W--------LTPRAFNGHLPGSVRVWAAADVPAGFHATH 114
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y L A + A D + D L GE FHN T
Sbjct: 115 DAVRRTYRYHLYAPARVEETDHDHAVDDGRVRD---ALARLSGEQDFHNLT 162
>gi|452944252|ref|YP_007500417.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. HO]
gi|452882670|gb|AGG15374.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. HO]
Length = 247
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF----KAGGIRESNYGNLQKIAW 133
K + +VGT+Y G Q Q + + TI+ E+E L+ K I+ QKI
Sbjct: 2 KNYKFSISFVGTNYSGWQYQPN---VPTIQNEVEEKLYYIVNKKKPIK-------QKIRA 51
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
SRTDKGVH++ + +KME D L K +N+ LP++IKV +I
Sbjct: 52 IGCSRTDKGVHAIEFVFNVKMEFDKDLNF-------LKKALNSALPKDIKVHNIEEVPLE 104
Query: 194 FDPRRECNLRKYSYLL 209
F+ R + + Y Y L
Sbjct: 105 FNSRFDALKKTYIYKL 120
>gi|355571506|ref|ZP_09042758.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
gi|354825894|gb|EHF10116.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
Length = 289
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 61/155 (39%), Gaps = 18/155 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++A R GY+G + G Q+Q T+EGE A + + G Q + R
Sbjct: 14 RLAFRCGYIGDRFSGSQVQ---SGARTVEGEFIAACLRLSLFPDPRAGRFQA-----AGR 65
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GVH+ + C+ P A I+L + HLP ++ V + F PR
Sbjct: 66 TDRGVHARGQVFCISTPFPDRA-------INL---LRYHLPADLWVTGVARVAPGFHPRH 115
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN 233
R Y Y + + AA DF+
Sbjct: 116 GAIHRTYRYFFGERDLDVQPMDRAARAFEGTFDFS 150
>gi|146093784|ref|XP_001467003.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
Length = 499
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 23/175 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+ALR+ Y G + GL Q++ + T+EG + AL + I E N + R
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDN--TVEGLVCDALRRLRLIPEDGPHN-----FGRCG 112
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTDKGV +L + L + DA P +D +N LP I++ +FD
Sbjct: 113 RTDKGVSALGNALSLTARASCTADAEPQLP-PLDYCSMLNNVLPSTIRIVGCALVDDTFD 171
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R C R Y Y + + + AA F G H F N+ +
Sbjct: 172 ARFSCVHRTYRYYFFHRGLNLEAMQEAAAF-------------FLGTHNFRNFCK 213
>gi|307721208|ref|YP_003892348.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294]
gi|306979301|gb|ADN09336.1| tRNA pseudouridine synthase A [Sulfurimonas autotrophica DSM 16294]
Length = 236
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 18/131 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL + Y GT + G Q Q++ + T+ GELE L K GI QK+ S R
Sbjct: 2 RVALHLAYNGTHFFGSQTQKE--TSKTVLGELENVL-KKLGIE-------QKVI--ASGR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TDKGVH ATM +++PP W+D L + +N L + V I P F R
Sbjct: 50 TDKGVH--ATMQVCHIDLPP-YWEDTQ---KLKRVLNEMLNDALHVKRIRPVSDDFHARY 103
Query: 199 ECNLRKYSYLL 209
R Y Y++
Sbjct: 104 SAKKRTYRYII 114
>gi|385324974|ref|YP_005879413.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA
pseudouridylate synthase I) [Neisseria meningitidis
8013]
gi|261393361|emb|CAX50997.1| tRNA pseudouridine synthase A (tRNA-uridine isomerase I; tRNA
pseudouridylate synthase I) [Neisseria meningitidis
8013]
Length = 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|82595787|ref|XP_725993.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481212|gb|EAA17558.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1510
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK L VGY+G+ Y G Q Q E+ TIE E+E L K +++++ G +RS+
Sbjct: 1068 KKYGLCVGYIGSRYHGCQGQGKEY--MTIENEIERTLTKINAVKKTSKG--FNYCLSRSA 1123
Query: 138 RTDKGVHSLATMICLKMEI 156
RTD GVH+L + + I
Sbjct: 1124 RTDLGVHALYNLFVYNINI 1142
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVI 214
K +N++LP +IK F I +SFD R+ C+ R Y YL P V+
Sbjct: 1218 FIKLLNSNLPSDIKCFDIYKVTKSFDARKFCSFRLYEYLFPTYVL 1262
>gi|333373218|ref|ZP_08465134.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
gi|332970797|gb|EGK09777.1| tRNA pseudouridine synthase A [Desmospora sp. 8437]
Length = 258
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K+ L V Y GTD+ G Q Q + T++G LE L + G + I+ + R
Sbjct: 3 KIKLTVAYDGTDFSGFQRQPGK---RTVQGTLEETLTRVTG---------ETISVTGAGR 50
Query: 139 TDKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+L +I + + IP + W + +NA LPR++ V R F
Sbjct: 51 TDAGVHALGQVIHFETSVPIPTERW---------VRLLNASLPRDLLVTQAKEVPREFHA 101
Query: 197 RRECNLRKYSYLL 209
R + + Y Y L
Sbjct: 102 RYDACWKHYRYTL 114
>gi|332295380|ref|YP_004437303.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM
14796]
gi|332178483|gb|AEE14172.1| tRNA pseudouridine synthase A [Thermodesulfobium narugense DSM
14796]
Length = 283
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLS-TIEGELETALFKAGGIRESNYGNLQKIAWAR 135
K +A + Y GT++ G QMQ ++ IE +LE +FK +++
Sbjct: 8 KMDIAAIISYDGTNFHGFQMQNQSRTVQLVIEQKLEK-IFK------------ERVCVVP 54
Query: 136 SSRTDKGVHSLATMICLKM-EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+ RTD GVH++ +I ++ + P D K L +N HLP +I++ + F
Sbjct: 55 AGRTDAGVHAIGQVISFRLAKCPFDVEK-------LQNILNYHLPDDIRISEMRLMPADF 107
Query: 195 DPRRECNLRKYSYLLPAEV-IGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
+ R R Y Y + A+ I + +D + D A LN F +++ SK
Sbjct: 108 NSRFSAKSRVYVYAISAKKDICAHLNRYFWNLDISLEDLKATLNLIPNRFCFRSFSRVSK 167
Query: 254 YRRKPHKTGRVSK 266
R+ T SK
Sbjct: 168 DRKLNFGTVTFSK 180
>gi|15677859|ref|NP_275027.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58]
gi|385854079|ref|YP_005900593.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|427828133|ref|ZP_18995151.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|433466017|ref|ZP_20423486.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM422]
gi|433489212|ref|ZP_20446358.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M13255]
gi|433491394|ref|ZP_20448503.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM418]
gi|433505884|ref|ZP_20462812.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9506]
gi|433508028|ref|ZP_20464922.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9757]
gi|433510225|ref|ZP_20467079.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 12888]
gi|433512240|ref|ZP_20469050.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 4119]
gi|25009507|sp|Q9JXI2.1|TRUA_NEIMB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|7227297|gb|AAF42357.1| tRNA pseudouridine synthase A [Neisseria meningitidis MC58]
gi|316983916|gb|EFV62895.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|325201083|gb|ADY96538.1| tRNA pseudouridine synthase A [Neisseria meningitidis H44/76]
gi|432200405|gb|ELK56498.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM422]
gi|432220142|gb|ELK75967.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M13255]
gi|432225146|gb|ELK80899.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM418]
gi|432238408|gb|ELK93974.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9506]
gi|432238610|gb|ELK94175.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 9757]
gi|432244469|gb|ELK99957.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 12888]
gi|432244863|gb|ELL00344.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 4119]
Length = 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|448466547|ref|ZP_21599133.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
gi|445813808|gb|EMA63782.1| tRNA pseudouridine synthase A [Halorubrum kocurii JCM 14978]
Length = 292
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 69/171 (40%), Gaps = 20/171 (11%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI-RESNYGNLQKIAWARSSRT 139
A RV Y G +Y G Q Q H+ +T+EG L L + G + R + +A + RT
Sbjct: 11 AFRVAYDGREYAGFQRQ--PHA-TTVEGTLLRGLAEHGILDRGDGPTHATPPGYAAAGRT 67
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV ++A + PD W L R N HLP +++V++
Sbjct: 68 DAGVSAVAQTVAFAA---PD-W--------LTPRAFNGHLPGSVRVWAAADVPEGLHATH 115
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
+ R Y Y L A A D + D L GEH FHN T
Sbjct: 116 DATRRTYRYHLYAPARSDGGDRPHAVDDDRVRD---ALARLSGEHDFHNLT 163
>gi|416180120|ref|ZP_11611305.1| tRNA pseudouridine synthase A [Neisseria meningitidis M6190]
gi|416193671|ref|ZP_11617227.1| tRNA pseudouridine synthase A [Neisseria meningitidis ES14902]
gi|416198636|ref|ZP_11619003.1| tRNA pseudouridine synthase A [Neisseria meningitidis CU385]
gi|418291452|ref|ZP_12903455.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM220]
gi|421555726|ref|ZP_16001651.1| tRNA pseudouridine synthase A [Neisseria meningitidis 98008]
gi|433493479|ref|ZP_20450560.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM586]
gi|433503802|ref|ZP_20460754.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM126]
gi|325131279|gb|EGC53990.1| tRNA pseudouridine synthase A [Neisseria meningitidis M6190]
gi|325137309|gb|EGC59897.1| tRNA pseudouridine synthase A [Neisseria meningitidis ES14902]
gi|325139358|gb|EGC61898.1| tRNA pseudouridine synthase A [Neisseria meningitidis CU385]
gi|372199812|gb|EHP13992.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM220]
gi|389606781|emb|CCA45692.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha522]
gi|402328702|gb|EJU64068.1| tRNA pseudouridine synthase A [Neisseria meningitidis 98008]
gi|432225539|gb|ELK81280.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM586]
gi|432238255|gb|ELK93828.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM126]
Length = 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 23/175 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+ALR+ Y G + GL Q++ + T+EG + AL + I E N + R
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDN--TVEGLVCDALRRLRLIPEDGPHN-----FGRCG 112
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTDKGV +L + L + DA P +D +N LP I++ +FD
Sbjct: 113 RTDKGVSALGNALSLTARASCTADAEPQLP-PLDYCSMLNNVLPSTIRIVGCALVDDAFD 171
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R C R Y Y + + + AA F G H F N+ +
Sbjct: 172 ARFSCVHRTYRYYFFHRGLNLEAMQEAAAF-------------FLGTHNFRNFCK 213
>gi|416165260|ref|ZP_11607384.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568]
gi|433474364|ref|ZP_20431717.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97021]
gi|433482794|ref|ZP_20440045.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2006087]
gi|433484809|ref|ZP_20442023.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2002038]
gi|433487040|ref|ZP_20444227.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97014]
gi|325127315|gb|EGC50250.1| tRNA pseudouridine synthase A [Neisseria meningitidis N1568]
gi|432207245|gb|ELK63237.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97021]
gi|432214114|gb|ELK70021.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2006087]
gi|432219046|gb|ELK74894.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 2002038]
gi|432220025|gb|ELK75852.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 97014]
Length = 265
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAVRPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|448357622|ref|ZP_21546319.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
gi|445648515|gb|ELZ01469.1| tRNA pseudouridine synthase A [Natrialba chahannaoensis JCM 10990]
Length = 293
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 32/182 (17%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIA-WARSSRT 139
A R+ Y GT Y G Q Q D +ST+ E A+F A + + K A +A + RT
Sbjct: 3 AFRLAYDGTGYYGFQRQPD---VSTV----EDAMFDALRALDVLAPDADKPAGYAAAGRT 55
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D GV +LA + + PD W L R N LP +I+ ++ + F
Sbjct: 56 DAGVSALAQTVAFEA---PD-W--------LTPRAFNGQLPADIRAWAAADAPDEFHATH 103
Query: 199 ECNLRKYSYLL---PAEVIGINSQLT-----AAEIDSHISD---FNAILNEFEGEHPFHN 247
R+Y+Y L PA + + T A + +H D F A + G H FHN
Sbjct: 104 HARKREYTYYLYAPPANDDALPASDTDEGHAATPVTAHAVDDDRFQAACDALSGSHDFHN 163
Query: 248 YT 249
T
Sbjct: 164 LT 165
>gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1]
gi|238690561|sp|B5RLM0.1|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690579|sp|B5RQJ5.1|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1]
Length = 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N K+ +
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTK---PTIQGEIEKALEKI---------NKTKVKIQSAG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ +I ++I + +L +N+ L +I++ + F PR
Sbjct: 50 RTDKGVHAKRQIISFYIKININLK-------NLKTAINSLLKNDIRIIKLKYVSNEFQPR 102
Query: 198 RECNLRKYSYLL 209
RKY+Y +
Sbjct: 103 FHAKKRKYTYYI 114
>gi|421564135|ref|ZP_16009944.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM2795]
gi|421907867|ref|ZP_16337733.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha704]
gi|393291003|emb|CCI73741.1| tRNA pseudouridine synthase A [Neisseria meningitidis alpha704]
gi|402339066|gb|EJU74287.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM2795]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|363900599|ref|ZP_09327104.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|395209079|ref|ZP_10398244.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
gi|361956473|gb|EHL09791.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB1]
gi|394705680|gb|EJF13206.1| tRNA pseudouridine(38-40) synthase [Oribacterium sp. ACB8]
Length = 253
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+ L++ Y GT+Y G Q Q + L T+ GE+E L + G Q A SR
Sbjct: 3 RFVLKLAYEGTNYHGFQRQEE---LRTVSGEVEEVLSRLFP------GECQNFIGA--SR 51
Query: 139 TDKGVHSLATMICLKMEIP--PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD+GVH+L ++ E P+ ++ + +N++LP +I+V S F P
Sbjct: 52 TDQGVHALGNILSFDTEAERNPENYE---------RALNSYLPEDIRVLSAWKKTEDFHP 102
Query: 197 RRECNLRKYSY 207
R + ++Y Y
Sbjct: 103 RFTAHTKEYRY 113
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 96/241 (39%), Gaps = 46/241 (19%)
Query: 45 PASSSSKSSPSVSHTLTRPTPNSSDDKWEPVR--KKKVALRVGYVGTDYRGLQMQRDEHS 102
P S S P+ S + P D ++P + + +AL+ Y+G Y GL+ +
Sbjct: 80 PLDSDSTPVPAPSRVIKAAKPPKLDRSFDPSKYSTRFIALKFAYLGQAYNGLEHTNGNTT 139
Query: 103 -LSTIEGELETALFKAGGIRESNYGNLQK-------------IAW-----ARSSRTDKGV 143
L T+E L AL + I +L+ + W +++ RTDKGV
Sbjct: 140 PLPTVEEVLWKALRRTRLISPETTSDLEPSDRAERVPMRPYHLYWDGCEYSKAGRTDKGV 199
Query: 144 HSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPS-QRSFDPRRECNL 202
+ +I L++ D+ I++ RV LP +I+V + P+ FD R C
Sbjct: 200 SAFGQVIGLRVRT------DEMNYINVLNRV---LPEDIRVLAWCPNPPPGFDARFSCRE 250
Query: 203 RKYSYLL--PA-----EVIGI-----NSQLTAAEIDSHISDFNAI---LNEFEGEHPFHN 247
R+Y Y PA IG N AE D A+ FEG H F N
Sbjct: 251 RRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEFREGWLDIEAMREAAKHFEGSHDFRN 310
Query: 248 Y 248
+
Sbjct: 311 F 311
>gi|194334164|ref|YP_002016024.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271]
gi|194311982|gb|ACF46377.1| tRNA pseudouridine synthase A [Prosthecochloris aestuarii DSM 271]
Length = 237
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 86 YVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK-IAWARSSRTDKGVH 144
Y GTD+ G QR + ++ST++GE+E L + LQ+ ++ + RTDKGVH
Sbjct: 5 YDGTDFAG--WQRQDGAVSTVQGEIEAVLRRI----------LQEAVSITGAGRTDKGVH 52
Query: 145 SLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRK 204
++ +A + L +N+ LP +I++ S++ F R R+
Sbjct: 53 AMGQAASFMTGSSMEAGR-------LCHSLNSLLPSSIRIMSLIDVDGDFHARYSALSRQ 105
Query: 205 YSYLLPAEVIGINSQLTAAEIDSH-ISDFNAILNEFEGEHPFHNYTE 250
Y Y+L I + + + SH + N+ + G H F +++
Sbjct: 106 YRYMLRQRESAIFRRFSGYDRASHDLDQLNSRASVLLGRHDFKAFSK 152
>gi|433497600|ref|ZP_20454625.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M7089]
gi|433499643|ref|ZP_20456646.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M7124]
gi|432231539|gb|ELK87198.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M7089]
gi|432232552|gb|ELK88191.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis M7124]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|218767391|ref|YP_002341903.1| tRNA pseudouridine synthase A [Neisseria meningitidis Z2491]
gi|433480795|ref|ZP_20438072.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63041]
gi|433514358|ref|ZP_20471140.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63049]
gi|433520722|ref|ZP_20477430.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 65014]
gi|433541913|ref|ZP_20498351.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63006]
gi|25009506|sp|Q9JWF1.1|TRUA_NEIMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|121051399|emb|CAM07691.1| tRNA pseudouridine synthase [Neisseria meningitidis Z2491]
gi|432213213|gb|ELK69138.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63041]
gi|432245320|gb|ELL00790.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63049]
gi|432251338|gb|ELL06707.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 65014]
gi|432274984|gb|ELL30062.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 63006]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|304388653|ref|ZP_07370715.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091]
gi|304337399|gb|EFM03571.1| tRNA pseudouridine synthase A [Neisseria meningitidis ATCC 13091]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|121635695|ref|YP_975940.1| tRNA pseudouridine synthase A [Neisseria meningitidis FAM18]
gi|416214900|ref|ZP_11623156.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240013]
gi|421560032|ref|ZP_16005897.1| tRNA pseudouridine synthase A [Neisseria meningitidis 92045]
gi|433495529|ref|ZP_20452587.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM762]
gi|433501713|ref|ZP_20458692.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM174]
gi|166228740|sp|A1KWB6.1|TRUA_NEIMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|120867401|emb|CAM11173.1| tRNA pseudouridine synthase [Neisseria meningitidis FAM18]
gi|325143594|gb|EGC65914.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240013]
gi|402334117|gb|EJU69411.1| tRNA pseudouridine synthase A [Neisseria meningitidis 92045]
gi|432227098|gb|ELK82810.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM762]
gi|432232714|gb|ELK88350.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis NM174]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|448368394|ref|ZP_21555346.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
gi|445652224|gb|ELZ05124.1| tRNA pseudouridine synthase A [Natrialba aegyptia DSM 13077]
Length = 287
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A R+ Y GT Y G Q Q D ++T+E +L AL ++ + S + +A + RTD
Sbjct: 3 AFRLAYDGTAYHGFQRQPD---VATVEDDLFDAL-RSLSVLASKAD--KPAGYAAAGRTD 56
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV +LA + PD W + +N+ LP +I+ ++ + F
Sbjct: 57 AGVSALAQTVAFDA---PD-WL-------TPRALNSDLPADIRAWAAADAPDEFHATHHA 105
Query: 201 NLRKYSYLL---PAEVIGINSQL--TAAEIDSHISD--FNAILNEFEGEHPFHNYTERSK 253
R+Y+Y L PA+ S + + D + D F + G+H FHN T
Sbjct: 106 RRREYTYQLHAPPADDAPRRSGTADSTGDPDRAVDDDRFQRACHALSGDHDFHNLTPDD- 164
Query: 254 YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSK 291
H T R S A++DA F + + G GFS+
Sbjct: 165 -----HNTER-SPTLTATRDAEFIVITVTAG---GFSR 193
>gi|398813206|ref|ZP_10571908.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
gi|398039367|gb|EJL32505.1| pseudouridylate synthase I [Brevibacillus sp. BC25]
Length = 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K++ + Y GTD+ G Q+Q D+ T++GE+E AL + G +G S
Sbjct: 2 KRLRCVLAYDGTDFSGFQVQPDQ---VTVQGEIEAALNRVTGEDIQVFG---------SG 49
Query: 138 RTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I IP D W+ +N LP +I + ++ SF
Sbjct: 50 RTDAGVHARGQVIHFDTSSNIPMDKWR---------FVLNNQLPDSIVIRTVEEVDASFH 100
Query: 196 PRRECNLRKYSYLL 209
R + +++Y Y +
Sbjct: 101 ARFDVQVKEYRYCI 114
>gi|291042704|ref|ZP_06568449.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2]
gi|291013373|gb|EFE05335.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI2]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + + R Y YLL
Sbjct: 105 FHARFDASGRHYRYLL 120
>gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514]
gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514]
Length = 270
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 78/186 (41%), Gaps = 25/186 (13%)
Query: 75 VRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWA 134
+ K K L + Y G +Y G Q+Q+ + E T LF + G S
Sbjct: 1 MEKLKFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHS----------- 49
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
SSRTD GVH++ + MEIP ++ + LA +NAHLP +I+V S F
Sbjct: 50 -SSRTDTGVHAIG--MVAHMEIPKAEFRMTSEKLALA--INAHLPEDIRVMSAQKVAADF 104
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQL------TAAEIDSHISDFNAILNEFEGEHPFHNY 248
R + ++Y Y + + +N L E+D + + F G+H F ++
Sbjct: 105 HARFDAAGKQYRYFVWNQT-AMNPLLREQAWQVPKELD--LKAMRSAAKLFPGKHDFRSF 161
Query: 249 TERSKY 254
Y
Sbjct: 162 AASRNY 167
>gi|440803221|gb|ELR24130.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 488
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 36/188 (19%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ +AL++ Y+G Y GL +Q D + +TIE L AL + I + N + RS
Sbjct: 101 QRYIALKLAYLGWQYDGLAVQND--TDNTIETHLIAALKRVKLITDRPSSN-----YNRS 153
Query: 137 SRTDKGVHSLATMIC-LKMEIPPD-------AWKDDPYG--------IDLAKRVNAHLPR 180
RTDKGV +L + LK P D + D P + K +N+ LP
Sbjct: 154 GRTDKGVSALGNVRSNLKPANPIDENGAKAVIYADTPLDTSDPRKEEMPYLKMINSALPP 213
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
+I+V + + F R R Y Y AE + + AA+ + E
Sbjct: 214 DIQVLAWTTVPKDFSARFSTKHRTYKYFFLAENLQLERMREAAK-------------KIE 260
Query: 241 GEHPFHNY 248
GEH F ++
Sbjct: 261 GEHDFRHF 268
>gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Methanoregula boonei 6A8]
gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8]
Length = 276
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 42/179 (23%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAW 133
PVR +A RV Y+GT + G Q Q S T+EGE F R + + + + +
Sbjct: 14 PVR---LACRVSYLGTRFYGSQQQ---ESSRTVEGE-----FIEACRRLALFSDWRTAGF 62
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKR-VNAHLPRNIKVFSILPSQR 192
A + RTD+GVH+ +I + P D A++ +N+ LP +I +
Sbjct: 63 ASAGRTDRGVHACGQVIAFSTQTP-----------DRARQALNSQLPPDIWCTATAVVPD 111
Query: 193 SFDPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
F PR + R Y Y P + + + TAA EF G+H F N+
Sbjct: 112 HFHPRYDARSRTYRYYFGEPPRDPVAME---TAA-------------REFSGDHNFTNF 154
>gi|59802129|ref|YP_208841.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA 1090]
gi|62901142|sp|Q5F5V8.1|TRUA_NEIG1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|59719024|gb|AAW90429.1| putative tRNA pseudouridine synthase [Neisseria gonorrhoeae FA
1090]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAVRPAQAW---------IRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + + R Y YLL
Sbjct: 105 FHARFDASGRHYRYLL 120
>gi|218296263|ref|ZP_03497019.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23]
gi|218243335|gb|EED09865.1| tRNA pseudouridine synthase A [Thermus aquaticus Y51MC23]
Length = 259
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 23/132 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+++ L Y GT + GLQ QR L T++GELE AL + G L K A
Sbjct: 2 RRILLLTEYDGTHFAGLQRQRQ--GLRTVQGELEKAL--------PHIGALPKAVAA--G 49
Query: 138 RTDKGVHSLAT--MICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+LA I L+ IPP+ + + +N LP ++KV + F
Sbjct: 50 RTDAGVHALAMPFHIDLQSPIPPE---------KVPEALNRLLPEDLKVVAAREVAPDFH 100
Query: 196 PRRECNLRKYSY 207
R++ R Y Y
Sbjct: 101 ARKDALWRAYRY 112
>gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R]
gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R]
Length = 495
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 56/212 (26%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+AL+ Y G DY GL+ Q+ +L T+E L AL I + + W +
Sbjct: 47 RRKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRLIDPAT--GFEGCGWEKC 104
Query: 137 SRTDKGVHSLATMICL-------------------KMEIPPDA----------WKDDPYG 167
RTD+GV + +I L M++ P W + P
Sbjct: 105 GRTDRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTN 164
Query: 168 ------------IDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIG 215
+ +N LP I+V + P F R C R Y Y E +
Sbjct: 165 AARPATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKYFFSPEGLD 224
Query: 216 INSQLTAAEIDSHISDFNAILNEFEGEHPFHN 247
+ + AA+ GEH F N
Sbjct: 225 LAAMQDAAD-------------RLVGEHDFRN 243
>gi|432332241|ref|YP_007250384.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
gi|432138950|gb|AGB03877.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
Length = 280
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 36/188 (19%)
Query: 74 PVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAW 133
PVR +A RV Y+G+ + G QMQ E T+EGE F A R S + + + +
Sbjct: 14 PVR---LAFRVSYLGSRFFGSQMQVSER---TVEGE-----FVAACQRLSLFSDWRDAGF 62
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD+GVH++ + ++P A +N LP + + +
Sbjct: 63 LFAGRTDRGVHAIGQVAAFSTDVPERA----------VATINLQLPPDCWCTAYAEVSPT 112
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
F PR + R Y Y I++ AA F G H F ++
Sbjct: 113 FHPRYDAKKRTYRYFFSRAPPCIDAMAHAAA-------------RFVGSHNFSSFARMDG 159
Query: 254 YRRKPHKT 261
R P +T
Sbjct: 160 --RNPCRT 165
>gi|261380083|ref|ZP_05984656.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703]
gi|284797300|gb|EFC52647.1| tRNA pseudouridine synthase A [Neisseria subflava NJ9703]
Length = 281
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 29/191 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q + L T++ LE AL G ++I +
Sbjct: 13 QRWALTLSYDGSRFYGWQKQAGD--LPTVQTALEQALTSIAG---------EQINTIVAG 61
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A ++ + P AW + VNAHLP + V F+
Sbjct: 62 RTDTGVHATAQVVHFDTSVSRPEQAW---------VRGVNAHLPDGVAVLLAQKVAPHFN 112
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHIS-DFNAILNE---FEGEHPFHNYTE 250
R + R Y YLL E + S L + +H+ D N + EGEH F ++
Sbjct: 113 ARFDAYGRHYRYLL--ESSPVCSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRA 170
Query: 251 RSKYRRKPHKT 261
+ P KT
Sbjct: 171 AECQAKSPIKT 181
>gi|363898118|ref|ZP_09324654.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
gi|361957227|gb|EHL10538.1| tRNA pseudouridine synthase A [Oribacterium sp. ACB7]
Length = 253
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+ L++ Y GT+Y G Q Q + L T+ GE+E L + G Q A SR
Sbjct: 3 RFVLKLAYEGTNYHGFQRQEE---LRTVSGEVEEVLSRLFP------GECQNFIGA--SR 51
Query: 139 TDKGVHSLATMICLKMEIP--PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD+GVH+L ++ E P+ ++ + +N++LP +I+V S F P
Sbjct: 52 TDQGVHALGNILSFDTEAERNPENYE---------RALNSYLPEDIRVLSAWKKTEDFHP 102
Query: 197 RRECNLRKYSY 207
R + ++Y Y
Sbjct: 103 RFTTHTKEYRY 113
>gi|194099947|ref|YP_002003085.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae NCCP11945]
gi|240017604|ref|ZP_04724144.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA6140]
gi|254494689|ref|ZP_05107860.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268600271|ref|ZP_06134438.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268602508|ref|ZP_06136675.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18]
gi|385336855|ref|YP_005890802.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
gi|238693230|sp|B4RR02.1|TRUA_NEIG2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|193935237|gb|ACF31061.1| TruA [Neisseria gonorrhoeae NCCP11945]
gi|226513729|gb|EEH63074.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 1291]
gi|268584402|gb|EEZ49078.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae MS11]
gi|268586639|gb|EEZ51315.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID18]
gi|317165398|gb|ADV08939.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae TCDC-NG08107]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ + P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDITAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|418289198|ref|ZP_12901567.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM233]
gi|421541297|ref|ZP_15987423.1| tRNA pseudouridine synthase A [Neisseria meningitidis 93004]
gi|372200114|gb|EHP14244.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM233]
gi|402314820|gb|EJU50388.1| tRNA pseudouridine synthase A [Neisseria meningitidis 93004]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|335045936|ref|ZP_08538959.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759722|gb|EGL37279.1| tRNA pseudouridine synthase A [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 253
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 22/131 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+ L++ Y GT+Y G Q Q + L T+ GE+E L + G Q A SR
Sbjct: 3 RFVLKLAYEGTNYHGFQRQEE---LRTVSGEVEEVLSRLFP------GECQNFIGA--SR 51
Query: 139 TDKGVHSLATMICLKMEIP--PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD+GVH+L ++ E P+ ++ + +N++LP +I+V S F P
Sbjct: 52 TDQGVHALGNILSFDTEAERNPENYE---------RALNSYLPEDIRVLSAWKKTEDFHP 102
Query: 197 RRECNLRKYSY 207
R + ++Y Y
Sbjct: 103 RFTTHTKEYRY 113
>gi|268595826|ref|ZP_06129993.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02]
gi|268549215|gb|EEZ44633.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae 35/02]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ + P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDITAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|386859243|ref|YP_006271949.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
gi|384934124|gb|AFI30797.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
Length = 245
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N K+ +
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTK---PTIQGEIEKALEKI---------NKTKVKIQSAG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ +I ++I + +L +N+ L +I++ + F PR
Sbjct: 50 RTDKGVHAKRQIISFYIKININLK-------NLKTAINSLLKNDIRIIKLKYVSNEFQPR 102
Query: 198 RECNLRKYSYLL 209
RKY+Y +
Sbjct: 103 FHAKKRKYTYYI 114
>gi|193214164|ref|YP_001995363.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC
35110]
gi|193087641|gb|ACF12916.1| tRNA pseudouridine synthase A [Chloroherpeton thalassium ATCC
35110]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK-IAWAR 135
++ + + + Y GTD+ G Q Q TI+GE+E+ L + LQ+ +
Sbjct: 18 RRNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRV----------LQEPVELIA 67
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKRVNAHLPRNIKVFSILPSQRSF 194
+ RTD GVH+ A + + ++ I L +N LP IK+ I + +F
Sbjct: 68 AGRTDAGVHAKAQV--------ANFLTENSLSISRLKHALNGLLPSQIKIIEIEDAPENF 119
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAA-EIDSHISDFNAILNEFEGEHPFHNYTE 250
+ R + R Y Y L + S+ T D NA E G+H F ++++
Sbjct: 120 NARFDAKSRTYRYFLLTRYSALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSK 176
>gi|241759308|ref|ZP_04757414.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114]
gi|241320444|gb|EER56741.1| tRNA pseudouridine synthase A [Neisseria flavescens SK114]
Length = 270
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 29/191 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q + L T++ LE AL G ++I +
Sbjct: 2 QRWALTLSYDGSRFYGWQKQAGD--LPTVQTALEQALSSIAG---------EQINTIVAG 50
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A ++ + P AW + VNAHLP + V F
Sbjct: 51 RTDTGVHATAQVVHFDTSVSRPEQAW---------VRGVNAHLPDGVAVLVAQKVAPHFH 101
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEID-SHIS-DFNAILNE---FEGEHPFHNYTE 250
R + R Y YLL E + S L + +H+ D N + EGEH F ++
Sbjct: 102 ARFDAYGRHYRYLL--ESSPVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRA 159
Query: 251 RSKYRRKPHKT 261
+ P KT
Sbjct: 160 AECQAKSPIKT 170
>gi|161869166|ref|YP_001598332.1| tRNA pseudouridine synthase A [Neisseria meningitidis 053442]
gi|421566352|ref|ZP_16012103.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3081]
gi|433537644|ref|ZP_20494135.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 77221]
gi|189030137|sp|A9M0B8.1|TRUA_NEIM0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|161594719|gb|ABX72379.1| tRNA pseudouridine synthase [Neisseria meningitidis 053442]
gi|402340365|gb|EJU75566.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3081]
gi|432270393|gb|ELL25531.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 77221]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAVRPVQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|419796834|ref|ZP_14322352.1| tRNA pseudouridine(38-40) synthase [Neisseria sicca VK64]
gi|385699079|gb|EIG29398.1| tRNA pseudouridine(38-40) synthase [Neisseria sicca VK64]
Length = 284
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 82/191 (42%), Gaps = 29/191 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q D L T++ LE+AL + G + I +
Sbjct: 26 QRWALTLSYDGSRFYGWQKQAD--GLPTVQTVLESALSQIAG---------ETIRTIVAG 74
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A +I ++ P AW + VNA+LP + V F
Sbjct: 75 RTDTGVHATAQVIHFDTKVARPEQAW---------VRGVNAYLPEGVAVLFAQQVAPHFH 125
Query: 196 PRRECNLRKYSYLL---PAEVIGINSQL--TAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R + R+Y YLL P + ++ T ++D A+L EGEH F ++
Sbjct: 126 ARFDAYGRRYRYLLESSPVRSPILQGKIGWTHLKLDPEKMQQAALL--LEGEHDFSSFRA 183
Query: 251 RSKYRRKPHKT 261
+ P KT
Sbjct: 184 AECQAKSPVKT 194
>gi|226309840|ref|YP_002769734.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
gi|254789606|sp|C0ZIL2.1|TRUA_BREBN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|226092788|dbj|BAH41230.1| tRNA pseudouridine synthase A [Brevibacillus brevis NBRC 100599]
Length = 244
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K++ + Y GTD+ G Q+Q D+ T++GE+E AL + G +G S
Sbjct: 2 KRLRCVLAYDGTDFSGFQVQPDQ---VTVQGEIEAALNRVTGEDIQVFG---------SG 49
Query: 138 RTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ +I IP D W+ +N LP +I + ++ SF
Sbjct: 50 RTDAGVHARGQVIHFDTASNIPMDKWR---------FVLNNQLPDSIVIRTVEEVDASFH 100
Query: 196 PRRECNLRKYSYLL 209
R + +++Y Y +
Sbjct: 101 ARFDVQVKEYRYCI 114
>gi|429962244|gb|ELA41788.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 327
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 24/177 (13%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P ++ + K+KVALR+ Y G +Y+G+Q + L ++ L+ AL K GI +
Sbjct: 24 PYKKRGEYPAISKRKVALRLSYHGENYKGVQHYK---HLKSVHDCLQNAL-KVSGIGDG- 78
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICL----KMEIPPDAWK-----DDPYGIDLAKRVN 175
I + RTD GV ++ ++ + ++E P +++ + Y D+A +N
Sbjct: 79 ------IVFC--GRTDAGVSAINMVVSVEVNSRLENPNRSYQIIESDHEEYPYDVA--LN 128
Query: 176 AHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
LP +I++ P +F+ R +C R Y Y + + A E + DF
Sbjct: 129 MLLPDDIRITGWAPVPDNFNARYDCIQRHYKYFFALGSLDLKKMEEAVEKICQMDDF 185
>gi|407852041|gb|EKG05708.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 526
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 78/199 (39%), Gaps = 30/199 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+R+ Y G Y GL Q E + +T+E + AL I + I AR
Sbjct: 137 RKVAIRLAYHGHLYDGLAKQ--EETSNTVEAYVVAALKHVRLIPQDG-----PIDLARCG 189
Query: 138 RTDKGVHSLATMICLKMEIPPDAW-KDDPY--GIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV +L + L + +W D P +D +N+ LP I++ +F
Sbjct: 190 RTDKGVSALGNVFSLTVR--ASSWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTF 247
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER--- 251
D R C R Y Y + + + AA +G H F N+ +
Sbjct: 248 DARFSCVGRTYRYYFCHRGLNVEAMGNAAA-------------RLKGVHNFRNFCKTDVV 294
Query: 252 --SKYRRKPHKTGRVSKRA 268
S Y R G + A
Sbjct: 295 NVSNYERDVRSVGIFASEA 313
>gi|429192213|ref|YP_007177891.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|448325611|ref|ZP_21514997.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
gi|429136431|gb|AFZ73442.1| pseudouridylate synthase [Natronobacterium gregoryi SP2]
gi|445614976|gb|ELY68639.1| tRNA pseudouridine synthase A [Natronobacterium gregoryi SP2]
Length = 303
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK-IAWARSSRT 139
A R+ Y GTDY G Q Q S+ T+ E A+F+A E + +K +A + RT
Sbjct: 18 AFRIAYDGTDYYGYQRQ---PSVPTV----EDAIFEALRSLEVLAPDAEKPTGYAAAGRT 70
Query: 140 DKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRV-NAHLPRNIKVFSILPSQRSFDPRR 198
D+GV +LA I L+ PD W L R NA LP +++ ++ + F
Sbjct: 71 DRGVSALAQTIGLET---PD-W--------LTPRAFNAALPADVRAWASADAPEGFHATH 118
Query: 199 ECNLRKYSYLL--PAEVIGINSQLTAAE-IDSHISDFNAILNEFEGEHPFHNYT 249
R+Y+Y L P G + L +++ +D + A G H +HN T
Sbjct: 119 HATRREYTYQLYAPPADGGTSRSLESSDCVDDEL--VQAACRALSGSHDYHNLT 170
>gi|385340884|ref|YP_005894756.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136]
gi|433468035|ref|ZP_20425482.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 87255]
gi|325199128|gb|ADY94584.1| tRNA pseudouridine synthase A [Neisseria meningitidis G2136]
gi|432200946|gb|ELK57033.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 87255]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAVRPQQAW---------IRGVNAHLPEGIAVLHARQVALE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|401425633|ref|XP_003877301.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 499
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 23/175 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+ALR+ Y G + GL Q++ + T+EG + AL + I E N + R
Sbjct: 60 RKIALRLAYHGHVHDGLAKQKETDN--TVEGLVCDALRRLRLIPEDGPHN-----FGRCG 112
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTDKGV +L + L + DA P +D +N LP I++ +FD
Sbjct: 113 RTDKGVSALGNALSLTARASCTADAEPQLP-PLDYCSMLNNVLPSTIRIVGCALVDDAFD 171
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R C R Y Y + + + AA F G H F N+ +
Sbjct: 172 ARFSCVHRTYRYYFFHRGLNLAAMQEAAAF-------------FLGTHNFRNFCK 213
>gi|433522733|ref|ZP_20479413.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 61103]
gi|432257381|gb|ELL12682.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 61103]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------IRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|385852118|ref|YP_005898633.1| tRNA pseudouridine synthase A [Neisseria meningitidis M04-240196]
gi|421567873|ref|ZP_16013604.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3001]
gi|325206941|gb|ADZ02394.1| tRNA pseudouridine synthase A [Neisseria meningitidis M04-240196]
gi|402342818|gb|EJU77974.1| tRNA pseudouridine synthase A [Neisseria meningitidis NM3001]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTIV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|421551557|ref|ZP_15997545.1| tRNA pseudouridine synthase A [Neisseria meningitidis 69166]
gi|433472286|ref|ZP_20429662.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 68094]
gi|433478593|ref|ZP_20435899.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 70012]
gi|433527037|ref|ZP_20483655.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 69096]
gi|433539800|ref|ZP_20496264.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 70030]
gi|402327062|gb|EJU62458.1| tRNA pseudouridine synthase A [Neisseria meningitidis 69166]
gi|432206239|gb|ELK62248.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 68094]
gi|432212873|gb|ELK68804.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 70012]
gi|432258125|gb|ELL13414.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 69096]
gi|432270845|gb|ELL25978.1| tRNA pseudouridine(38-40) synthase [Neisseria meningitidis 70030]
Length = 265
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------IRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|387207441|gb|AFJ69057.1| trna pseudouridine synthase family protein, partial
[Nannochloropsis gaditana CCMP526]
Length = 138
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G +V ++++G++F+LHQIRKMV A+ V R P ++ + + LP+APSE L+
Sbjct: 7 GLEWVCVTLTGQAFLLHQIRKMVAVAIMVSRGSAPATLIE-DAYQDVMLTLPMAPSEGLY 65
Query: 440 LRANSFSV 447
L SF++
Sbjct: 66 LDKASFAL 73
>gi|385792860|ref|YP_005825836.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678185|gb|AEE87314.1| tRNA pseudouridine synthase A [Francisella cf. novicida Fx1]
Length = 258
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HS S ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSPS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + +I E P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIINFYSDAERPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>gi|416208849|ref|ZP_11621180.1| tRNA pseudouridine synthase A [Neisseria meningitidis 961-5945]
gi|325141434|gb|EGC63912.1| tRNA pseudouridine synthase A [Neisseria meningitidis 961-5945]
Length = 265
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTIV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
Length = 249
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 44/203 (21%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+++ L + Y GT + G Q R T++ ELE+AL + G + K+ A
Sbjct: 2 RRIKLTLEYDGTRFAGFQ--RQAKGERTVQAELESALAQIPGA-------VPKVVAA--G 50
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+L ++ E IPP+ PY + N LP +++ + + F
Sbjct: 51 RTDAGVHALGMVVHYDTEDRIPPE---KIPYAL------NRLLPPDVRALAAEAAPPGFH 101
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI------SDFNAI---LNEFEGEHPFH 246
R C+ R+Y Y + +N Q+ +A D NA+ L F GEH F
Sbjct: 102 ARYSCHWRRYRYRI------LNRQMPSALARERTWWVPKPLDANAMQQGLAHFLGEHDFK 155
Query: 247 NY-------TERSKYRRKPHKTG 262
+ T R+ YR + + G
Sbjct: 156 AFATQERRGTVRTLYRARLERCG 178
>gi|256830021|ref|YP_003158749.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
gi|256579197|gb|ACU90333.1| tRNA pseudouridine synthase A [Desulfomicrobium baculatum DSM 4028]
Length = 246
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 37/176 (21%)
Query: 79 KVALRVGYVGTDYRGLQMQ-RDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ L V YVGT Y+G Q+Q R E TI+G +E L + G +G S
Sbjct: 3 RIRLTVAYVGTRYQGWQIQGRGE----TIQGAIEDKLARICGELVRVHG---------SG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+LA + + P++ + P+ + +NA LP +I + +Q F R
Sbjct: 50 RTDSGVHALAQVAHFDV---PESKRHIPW----RQALNAMLPDDISILEAREAQDDFHAR 102
Query: 198 RECNLRKYSYLL----------------PAEVIGINSQLTAAEIDSHISDFNAILN 237
++Y+Y L P + + AAE+ + DF A N
Sbjct: 103 FSVRSKRYAYTLWTEPRFTMPQRAPFVWPVRGLDFEAMDQAAEVLAGTHDFAAFQN 158
>gi|432333341|ref|ZP_19585128.1| tRNA pseudouridine synthase TruA [Rhodococcus wratislaviensis IFP
2016]
gi|430779746|gb|ELB94882.1| tRNA pseudouridine synthase TruA [Rhodococcus wratislaviensis IFP
2016]
Length = 270
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
L + Y GTD+ G Q + L T+ GE+E K G + + LQ + RTD
Sbjct: 3 LDIAYDGTDFSGWARQ---NGLRTVCGEIEE---KLGAVLRAP---LQLTV---AGRTDA 50
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH AT +++P DA DDP L +R+ LP+++++ I + FD R
Sbjct: 51 GVH--ATGQVAHVDVPLDAVPDDPS--RLVRRLARFLPKDVRIKQIAFAPEHFDARFSAM 106
Query: 202 LRKYSYLLPAEVIGIN 217
R Y Y L A G +
Sbjct: 107 RRHYEYRLTAAAYGAD 122
>gi|453051846|gb|EME99342.1| tRNA pseudouridine synthase A [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 286
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 23/201 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G D+ G QR+ T++GELE A+ + S +A R
Sbjct: 11 RVRLDLSYDGRDFSGWAKQRE--GQRTVQGELEDAIRT---VTRSKVTYELTVA----GR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L +R+ LP +++V+ + + F+ R
Sbjct: 62 TDAGVHARGQVA--HVDLPVEVWAE--HEDKLLRRLAGRLPHDVRVWRVAEAPAGFNARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTERSK 253
R+Y+Y + G++ L + H + NA GEH F Y +
Sbjct: 118 SAIWRRYAYRVVDHPAGVDP-LLRGHVLWHDWPLDVDAMNAAAERLVGEHDFAAYCK--- 173
Query: 254 YRRKPHKTGRVSKRAKASKDA 274
+R+ T R +R +DA
Sbjct: 174 -KREGATTIRTLQRLDWERDA 193
>gi|17231681|ref|NP_488229.1| tRNA pseudouridine synthase A [Nostoc sp. PCC 7120]
gi|42559852|sp|Q8YPK5.1|TRUA_NOSS1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|17133324|dbj|BAB75888.1| tRNA-pseudouridine synthase I [Nostoc sp. PCC 7120]
Length = 282
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 23/145 (15%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
D +P + ++VAL V Y+GT + G Q Q+ T++ E+ETA+ K G + +G
Sbjct: 3 DSHQPKQTQRVALVVQYLGTHFHGWQRQKQH---RTVQEEIETAIAKILGHHVTLHG--- 56
Query: 130 KIAWARSSRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSI 187
+ RTD GVH+ A + IP W A +N++LP++I + +
Sbjct: 57 ------AGRTDSGVHAAAQVAHFDATGLIPAHKW---------ASVINSYLPKDILIKAS 101
Query: 188 LPSQRSFDPRRECNLRKYSYLLPAE 212
+ R R+Y Y + E
Sbjct: 102 AAVGDRWHARFSAAYRRYRYTIYTE 126
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K++ L+V Y GTD+ G Q+Q +E T++GELE+ L N I S
Sbjct: 2 KRIGLKVAYDGTDFAGYQIQPNER---TVQGELESVL--------KNIHKGMSIRVTASG 50
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ ++ + P D W P + N+ LP +I V F
Sbjct: 51 RTDTGVHARGQIVHFDTSLSFPVDRW---PIAL------NSQLPADICVLEAADVPADFH 101
Query: 196 PRRECNLRKYSY 207
R ++Y Y
Sbjct: 102 ARYSAKTKEYRY 113
>gi|283781972|ref|YP_003372727.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068]
gi|283440425|gb|ADB18867.1| tRNA pseudouridine synthase A [Pirellula staleyi DSM 6068]
Length = 285
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
L + Y GT++ G Q Q + T++ ELE A+ G+R + S RTD
Sbjct: 6 LTLAYDGTNFGGWQWQPNRR---TVQDELEKAVETITGVRSR---------FVASGRTDA 53
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH+L + E DP G L K +NA +P +I +F ++ +F P R+
Sbjct: 54 GVHALGQVAAFSSET-----GIDPAG--LLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAV 106
Query: 202 LRKYSYLL 209
++Y Y++
Sbjct: 107 RKRYRYVV 114
>gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
Length = 339
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 44 CPASSSSKSSPSV---------SHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGL 94
CP K+SP V S + R + + K+ +AL++ Y G Y G+
Sbjct: 16 CPPYEDDKNSPEVRAASMGLESSGGMERSRRQKHRGALKCISKRTIALKISYDGRRYSGV 75
Query: 95 QMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATM----I 150
Q TI G LE AL + + G +K+ +A RTD GV ++ + +
Sbjct: 76 SPQSGR---ETIGGYLEYAL------KSTRLG--EKLVYA--GRTDAGVSAIGMIASGVL 122
Query: 151 CLKMEIP-------PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
++E+P D +K+ Y + L N HLP +I+V P +F R C R
Sbjct: 123 TSRIEMPNRSYAVAEDDYKEYKYDVML----NNHLPPDIRVVGWAPVPDTFSARFTCIQR 178
Query: 204 KYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+Y Y + + I+ AA +S F
Sbjct: 179 QYRYYFHKKGLDIDRMSKAASEIKGMSSF 207
>gi|374578976|ref|ZP_09652070.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
gi|374415058|gb|EHQ87493.1| pseudouridylate synthase I [Desulfosporosinus youngiae DSM 17734]
Length = 259
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 33/192 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+ + L++ Y GT+Y G Q Q E TI+G LE+ K +++ A +
Sbjct: 2 RNIRLKLAYDGTNYHGFQRQV-ESVGPTIQGTLESVWAKLVD---------EEVTLAMAG 51
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+L ++ IP D + K N+ LPR+I++ F+
Sbjct: 52 RTDAGVHALGQIVNFMTSARIPED---------KIPKAFNSLLPRDIRIHQAECVSDDFN 102
Query: 196 PRRECNLRKYSYLLPAEVI-GINSQLTAAE--IDSHISDFNAILNEFEGEHPFHNYT--- 249
R ++Y YLL + I + +L AA I +I+ EG H F +
Sbjct: 103 ARWSAKWKRYDYLLDNKPIPDLFKRLYAAHEPIPLNITLMQQAARFLEGRHNFKTFAASG 162
Query: 250 ------ERSKYR 255
ER+ YR
Sbjct: 163 GDSKRFERTIYR 174
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 339 QNSSSVIRARWLYETDEADKLSASHF-RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQ 397
Q ++ + R ++T A + F R I+ C +LE L + +S G+ F+ H
Sbjct: 143 QQAARFLEGRHNFKTFAASGGDSKRFERTIYRCQVSELENQL----IRVSCVGDGFLYHM 198
Query: 398 IRKMVGTAVAV-KRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
+R +VGT + V K ++LP +I + ++ + +AP++ L L ++S
Sbjct: 199 VRIIVGTLMDVGKGRILPGEIPEIIASQERKRARVIAPAQGLTLVHVNYS 248
>gi|448122103|ref|XP_004204367.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358349906|emb|CCE73185.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 430
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 10/178 (5%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +A++ Y+G +Y GL Q + L T+E E+ AL KA I + +R
Sbjct: 72 KRFIAIKFAYLGWNYSGLSFQYEPAPLPTVEEEILKALEKAKIIPAVDPLCCD---LSRC 128
Query: 137 SRTDKGVHSLATMICLKM--EIPP---DAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
RTD+GV ++ ++ L + + P D+ +D + +N+ LP +I+V ++ L
Sbjct: 129 GRTDRGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHP 188
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNY 248
+F+ R C R+Y Y + + AA+ + DF + + +G NY
Sbjct: 189 PPNFNARFSCLYRQYRYFFRPHDLDVELMSKAAKKYEGVHDFRSFC-KIDGSKQITNY 245
>gi|255067233|ref|ZP_05319088.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256]
gi|255048601|gb|EET44065.1| tRNA pseudouridine synthase A [Neisseria sicca ATCC 29256]
Length = 272
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 29/191 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q D L T++ LE+AL + G + I +
Sbjct: 14 QRWALTLSYDGSRFYGWQKQAD--GLPTVQTVLESALSQIAG---------ETIRTIVAG 62
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A ++ ++ P AW + VNA+LP + V F
Sbjct: 63 RTDTGVHATAQVVHFDTQVARPEQAW---------VRGVNAYLPEGVAVLFAQQVAPHFH 113
Query: 196 PRRECNLRKYSYLLPAE-----VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R + R+Y YLL + ++ T ++D A+L EGEH F ++
Sbjct: 114 ARFDAYGRRYRYLLESSPVRSPILQGKVGWTHLKLDPEKMQQAALL--LEGEHDFSSFRA 171
Query: 251 RSKYRRKPHKT 261
+ P KT
Sbjct: 172 VECQAKSPVKT 182
>gi|449328632|gb|AGE94909.1| tRNA pseudouridine synthase a [Encephalitozoon cuniculi]
Length = 339
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 44 CPASSSSKSSPSV---------SHTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGL 94
CP K+SP V S + R + + K+ +AL++ Y G Y G+
Sbjct: 16 CPPYEDDKNSPEVRAASMGLESSGGMERSRRQKHRGALKCISKRTIALKISYDGRRYSGV 75
Query: 95 QMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATM----I 150
Q TI G LE AL + + G +K+ +A RTD GV ++ + +
Sbjct: 76 SPQSGR---ETIGGYLEYAL------KSTRLG--EKLVYA--GRTDAGVSAIGMIASGVL 122
Query: 151 CLKMEIP-------PDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLR 203
++E+P D +K+ Y + L N HLP +I+V P +F R C R
Sbjct: 123 TSRIEMPNRSYAVAEDDYKEYKYDVML----NNHLPPDIRVVGWAPVPDTFSARFTCIQR 178
Query: 204 KYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+Y Y + + I+ AA +S F
Sbjct: 179 QYRYYFHKKGLDIDRMSKAASEIKGMSSF 207
>gi|268597753|ref|ZP_06131920.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19]
gi|268551541|gb|EEZ46560.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae FA19]
Length = 265
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAVRPAQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 429
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+R+ Y G Y GL Q E + +T+E + AL I + I AR
Sbjct: 40 RKVAIRLAYHGHLYDGLAKQ--EETSNTVEAYVVAALKHVRLIPQDG-----PIDLARCG 92
Query: 138 RTDKGVHSLATMICLKMEIPPDAW-KDDPY--GIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV +L + L + +W D P +D +N+ LP I++ +F
Sbjct: 93 RTDKGVSALGNVFSLT--VRASSWPTDSPQKPALDYCAMLNSALPVTIRIVGWAYVDDTF 150
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
D R C R Y Y + + + AA +G H F N+ +
Sbjct: 151 DARFSCVGRTYRYYFCHRGLNVEAMGNAAA-------------RLKGVHNFRNFCK 193
>gi|90410767|ref|ZP_01218782.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
gi|90328398|gb|EAS44696.1| tRNA pseudouridine synthase A [Photobacterium profundum 3TCK]
Length = 261
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL + Y G Y G Q Q D + +++ LE AL S+ N + IA + R
Sbjct: 2 RIALGIEYDGAKYCGWQRQVD---VDSVQERLEKAL--------SHIAN-KPIAVFCAGR 49
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH ++ +++ D + VNAHLPR+I V P F R
Sbjct: 50 TDTGVHGTGQVVHFDVDV-------DRQMVAWTIGVNAHLPRDISVRWATPVSDDFHARF 102
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNE---------FEGEHPF 245
R+Y Y++ N+ L A +S ++ L+E GEH F
Sbjct: 103 SATARRYRYII------YNNALRPAIFGIGVSHYHGHLDEKKMHEAAQYLVGEHDF 152
>gi|399577836|ref|ZP_10771588.1| pseudouridylate synthase i [Halogranum salarium B-1]
gi|399237278|gb|EJN58210.1| pseudouridylate synthase i [Halogranum salarium B-1]
Length = 280
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 27/173 (15%)
Query: 81 ALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTD 140
A RV Y G Y G Q Q S+ST+E L AL + + E + + +A + RTD
Sbjct: 3 AFRVAYDGRPYFGFQRQ---PSVSTVEDTLFDALRRLDVLDEDAH---RPTGYAAAGRTD 56
Query: 141 KGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRREC 200
GV ++A + E P W + +N+ LP N++ ++ F +
Sbjct: 57 AGVSAVAQTVAF--ECP--EWC-------TPRALNSELPGNVRAWAAADVDDDFHATHDA 105
Query: 201 NLRKYSYLLPAEVIGINSQLTAAEIDS--HISDFNA--ILNEFEGEHPFHNYT 249
R+Y+Y L A G S +D H+ D A L+ GEH FHN T
Sbjct: 106 IRRQYTYHLYAPRAGTES------LDGRPHVDDQRAREALDALSGEHDFHNLT 152
>gi|424851615|ref|ZP_18276012.1| tRNA pseudouridine synthase A [Rhodococcus opacus PD630]
gi|356666280|gb|EHI46351.1| tRNA pseudouridine synthase A [Rhodococcus opacus PD630]
Length = 270
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
L + Y GTD+ G Q + L T+ GE+E K G + ++ LQ + RTD
Sbjct: 3 LDIAYDGTDFSGWARQ---NGLRTVCGEIEE---KLGAVLRTS---LQLTV---AGRTDA 50
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH AT +++P DA DDP L +R+ LP+++++ I + FD R
Sbjct: 51 GVH--ATGQVAHVDVPLDAVPDDPS--RLVRRLARFLPKDVRIKQIAFAPEHFDARFSAM 106
Query: 202 LRKYSYLLPAEVIGIN 217
R Y Y L + G +
Sbjct: 107 RRHYEYRLTSAAYGAD 122
>gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
Length = 288
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 19/178 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GT + G Q T++GE+E AL RE+ + + R
Sbjct: 11 RVRLDLSYDGTGFSGWAKQ--AGGRRTVQGEIEDALRTVTRSRETFELTV-------AGR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L KR+ LPR+++V+++ + FD R
Sbjct: 62 TDAGVHARGQVA--HVDLPREVWAE--HHGKLLKRLAGRLPRDVRVWALREAPAGFDARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + H + N GEH F Y ++
Sbjct: 118 SAVWRRYAYRVTDNPGGVDPLLR-GHVLWHDWPLDVDAMNEAARGLLGEHDFAAYCKK 174
>gi|325288607|ref|YP_004264788.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM
8271]
gi|324964008|gb|ADY54787.1| tRNA pseudouridine synthase A [Syntrophobotulus glycolicus DSM
8271]
Length = 267
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 21/130 (16%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ LR+ Y GT Y G Q Q +EH TI+GELE A + ++I + RT
Sbjct: 4 ICLRLAYDGTQYHGFQSQPEEHG-KTIQGELEKAWKRLA---------QEEIKIVTAGRT 53
Query: 140 DKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
DKGVH+ +I K IP D I +A +N+ LP I++ F+ R
Sbjct: 54 DKGVHAAGQVINFKSAARIPQDK-------IPIA--MNSVLPEEIRILEAKLVGAEFNAR 104
Query: 198 RECNLRKYSY 207
++Y Y
Sbjct: 105 TSAYWKRYDY 114
>gi|340054160|emb|CCC48454.1| putative pseudouridine synthase A-like protein [Trypanosoma vivax
Y486]
Length = 439
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+KVA+R+ Y G Y GL Q + + +T+E + AL K + +L +R
Sbjct: 34 RKVAMRLAYHGHIYNGLVRQLE--TPNTVEEHIVLALRKLHLVEPDGPSDL-----SRCG 86
Query: 138 RTDKGVHSLATMICLKMEI---PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGV +L + L + P D + P +D +N LP I++ SF
Sbjct: 87 RTDKGVSALGNALSLTVRASSWPWDEQQKTP--LDYCNMLNNVLPPTIRIVGWTYVDSSF 144
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
D R C R Y Y + + + AA + +G H F N+ +
Sbjct: 145 DARFSCVGRTYRYYFCHRGLNLEAMRDAAAL-------------LKGTHNFRNFCK 187
>gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
Length = 289
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G+D+ G Q T++GE+E AL ++ Y + R
Sbjct: 11 RVRLDLSYDGSDFSGWAKQ--AGGRRTVQGEIEDALRTVTRSKDVTY------ELTVAGR 62
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P W + + L KR+ LP++++V+S+ + F+ R
Sbjct: 63 TDAGVHARGQVA--HVDLPEGLWAE--HRDKLLKRLAGRLPKDVRVWSLREAPAGFNARF 118
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAA------EIDSHISDFNAILNEFEGEHPFHNYTER 251
R+Y Y + + G++ L E+D + D A GEH F Y +R
Sbjct: 119 AALWRRYVYRVGDQPGGVDPLLRNHVLWHDWELDVAVMD--AAAKSLVGEHDFAAYAKR 175
>gi|149189278|ref|ZP_01867564.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1]
gi|148836837|gb|EDL53788.1| tRNA pseudouridine synthase A [Vibrio shilonii AK1]
Length = 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
KVAL + Y G +Y G Q QRD +S+++ ELE AL S N Q + + R
Sbjct: 2 KVALGIEYNGANYYGWQRQRD---VSSVQEELEKAL--------SIVAN-QPVEVQCAGR 49
Query: 139 TDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH ++ + + P AW VNA+LP++I V F
Sbjct: 50 TDAGVHGTGQVVHFESSVIRKPAAW---------TMGVNANLPKDIAVRWAKEVHEEFHA 100
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN 237
R R+Y Y++ N L + S IS ++ L+
Sbjct: 101 RFSATARRYRYVI------FNHALRPGILSSGISHYHGELD 135
>gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX]
gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX]
Length = 296
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 21/178 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y GTD+ G Q T++GEL+ AL + I + R
Sbjct: 26 RLRLDISYDGTDFSGWAEQPGRR---TVQGELQAALARVLRIPTPQL--------TVAGR 74
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P W+ + G L +R+ LP +++V ++ P+ FD R
Sbjct: 75 TDAGVHARGQVA--HVDVPASVWEAE--GERLLRRLAGVLPPDVRVTAVAPAPPGFDARF 130
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y Y + G++ L E+ H + N GEH F Y +
Sbjct: 131 SALFRRYVYRVSDAPGGVDP-LRRHEVLWHRRPLDVDRMNEAAAALLGEHDFAAYCRK 187
>gi|392392120|ref|YP_006428722.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
gi|390523198|gb|AFL98928.1| pseudouridylate synthase I [Desulfitobacterium dehalogenans ATCC
51507]
Length = 262
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+V Y GT Y G Q Q + H TI+G LET K + E ++ +
Sbjct: 4 KRNICLKVAYDGTHYHGFQRQPEFHG-PTIQGTLETVWAKL--VEE-------EVTLNTA 53
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD GVH+ ++ + IP D + K N+ LPR+I++ + + F
Sbjct: 54 GRTDTGVHAAGQVVNFRTGARIPVD---------KIPKAFNSLLPRDIRILAAQEAAEDF 104
Query: 195 DPRRECNLRKYSY 207
R ++Y Y
Sbjct: 105 HARFSAKWKRYDY 117
>gi|195953438|ref|YP_002121728.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1]
gi|229470758|sp|B4U9D9.1|TRUA_HYDS0 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|195933050|gb|ACG57750.1| tRNA pseudouridine synthase A [Hydrogenobaculum sp. Y04AAS1]
Length = 247
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALF----KAGGIRESNYGNLQKIAW 133
K + +VGT+Y G Q Q + + TI+ E+E L+ K I+ QKI
Sbjct: 2 KNYKFTISFVGTNYSGWQYQPN---VPTIQNEVEEKLYYIVNKKKPIK-------QKIRA 51
Query: 134 ARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
SRTDKGVH++ + +KME D L K +N+ LP++IK+ +I
Sbjct: 52 IGCSRTDKGVHAIEFVFNVKMEFDKDLNF-------LRKALNSALPKDIKIHNIEEVPLE 104
Query: 194 FDPRRECNLRKYSYLL 209
F+ R + + Y Y L
Sbjct: 105 FNSRFDALKKTYIYKL 120
>gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
Length = 284
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G+ + G Q T++GE+E AL +E+ + + R
Sbjct: 11 RVRLDLSYDGSAFHGWAKQ--AGGKRTVQGEIEDALRTVTRSQETYELTV-------AGR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P W++ + L KR+ LPR+++V+++ P+ F+ R
Sbjct: 62 TDAGVHARGQVA--HVDLPEQVWRE--HHEKLLKRLAGRLPRDVRVWALRPAPSGFNARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + H + N GEH F Y ++
Sbjct: 118 SAVWRRYAYRVTDNPGGVDP-LLRGHVLWHDWPLDVDAMNEAARRLLGEHDFAAYCKK 174
>gi|374850596|dbj|BAL53581.1| tRNA pseudouridine synthase A [uncultured Bacteroidetes bacterium]
Length = 261
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 20/134 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K + LR+ Y GTD+ GLQ Q + T+EGEL AL E YG I A
Sbjct: 2 KTLVLRLAYDGTDFVGLQRQPNGR---TVEGELAKAL-------ERIYGECPTIVPA--G 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGID-LAKRVNAHLPRNIKVFSI-LPSQRSFD 195
RTD GVH+ ++ +++ K D ++ + + +NA LP ++++ + L S F
Sbjct: 50 RTDSGVHARGMVVHVRLG------KADRIPVERIPRALNALLPEDVRINGVQLRSDTQFH 103
Query: 196 PRRECNLRKYSYLL 209
R + R YSY L
Sbjct: 104 ARYDALRRTYSYYL 117
>gi|385329283|ref|YP_005883586.1| tRNA pseudouridine synthase [Neisseria meningitidis alpha710]
gi|385856045|ref|YP_005902558.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240355]
gi|308390134|gb|ADO32454.1| tRNA pseudouridine synthase [Neisseria meningitidis alpha710]
gi|325204986|gb|ADZ00440.1| tRNA pseudouridine synthase A [Neisseria meningitidis M01-240355]
Length = 265
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LE AL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALENALAQIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTVAVRPQQAW---------VRGVNAHLPEGIAVLHAQQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|421615050|ref|ZP_16056088.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH28]
gi|408494223|gb|EKJ98843.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH28]
Length = 276
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
R + L V Y GT+Y G Q+Q ++ S I+ ELE + G + +
Sbjct: 6 RPRTFHLTVAYDGTEYCGWQVQPEQRS---IQSELERVIRPLAG---------RPVRVLG 53
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
S RTD GVH++ + + + WK D + L + +N+ LP +I+V ++ ++ F
Sbjct: 54 SGRTDAGVHAIGQVARCVLPV----WKAD--AVALQRAINSKLPNDIRVKAVRETRERFH 107
Query: 196 PRRECNLRKYSYLL 209
P + ++Y YL+
Sbjct: 108 PIADATGKQYQYLV 121
>gi|448124451|ref|XP_004204922.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358249555|emb|CCE72621.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 432
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ +A++ Y+G +Y GL Q + L T+E E+ AL KA I + + +R
Sbjct: 74 KRFIAIKFAYLGWNYSGLSFQYEPTPLPTVEEEILKALEKAKLIPAVDPLSCD---LSRC 130
Query: 137 SRTDKGVHSLATMICLKM--EIPP---DAWKDDPYGIDLAKRVNAHLPRNIKVFSI-LPS 190
RTD+GV ++ ++ L + + P D+ +D + +N+ LP +I+V ++ L
Sbjct: 131 GRTDRGVSAMNQVMSLTVRSNLAPEEQDSTSNDGRELPYLAILNSLLPPDIRVTAVCLHP 190
Query: 191 QRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
F+ R C R Y Y + + AA+ ++EG H F N+ +
Sbjct: 191 PPDFNARFSCLYRHYRYFFRPHDLDVELMSKAAK-------------KYEGVHDFRNFCK 237
>gi|401403432|ref|XP_003881470.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
Length = 475
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 44/191 (23%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
W+ V L++ Y G+ Y G+ Q + ++ T+EG L AL K IR+ N
Sbjct: 81 WDAVHTAHFLLKLAYDGSAYSGIAYQGENSAVRTVEGALFDALEKTCLIRDRN------- 133
Query: 132 AWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQ 191
AW + R P + + D A +NA LP +I++ + P
Sbjct: 134 AWQPAKRL----------------FPEENY-------DYAAVLNAVLPGDIRIVASAPVP 170
Query: 192 RSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE- 250
FD R +C R Y Y +E + + AA+ F GEH F + +
Sbjct: 171 PGFDARFDCTGRVYKYFFHSEGLDLPRMHRAAQ-------------RFVGEHNFRYFCKL 217
Query: 251 RSKYRRKPHKT 261
+ R P +T
Sbjct: 218 DPRQYRNPRRT 228
>gi|390960509|ref|YP_006424343.1| putative pseudouridine synthase [Thermococcus sp. CL1]
gi|390518817|gb|AFL94549.1| putative pseudouridine synthase [Thermococcus sp. CL1]
Length = 267
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 26/183 (14%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K+ALRV Y GT + G Q Q + T+EGEL AL K I N ++ + +SR
Sbjct: 2 KLALRVAYDGTAFYGFQRQ---PGVRTVEGELIRALTKLRIIE-----NPEENDFKGASR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK--RVNAHLPRNIKVFSILPSQRSFDP 196
TD+GV + ++ +P + DLAK +N HL R++ V + F P
Sbjct: 54 TDRGVSAFFNVVSF---VPGER-------ADLAKPEVLNHHL-RDVWVLGVAEVPDEFHP 102
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHN-----YTER 251
R + Y Y L E + + L A++ DF+A G P T+R
Sbjct: 103 RFWARGKTYRYYLVDEGFDLETMLECAKLFEGTHDFSAFAKLEPGRDPVRTISSIVMTQR 162
Query: 252 SKY 254
Y
Sbjct: 163 GGY 165
>gi|340361286|ref|ZP_08683716.1| tRNA pseudouridine synthase A [Neisseria macacae ATCC 33926]
gi|339888805|gb|EGQ78236.1| tRNA pseudouridine synthase A [Neisseria macacae ATCC 33926]
Length = 284
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 29/191 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++ AL + Y G+ + G Q Q D L T++ LE+AL + G + I +
Sbjct: 26 QRWALTLSYDGSRFYGWQKQAD--GLPTVQTVLESALSQIAG---------ETIRTIVAG 74
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ A ++ + P AW + VNA+LP + V +F
Sbjct: 75 RTDTGVHATAQVVHFDTSVIRPEQAW---------VRGVNAYLPEGVAVLFAQQVAPNFH 125
Query: 196 PRRECNLRKYSYLLPAE-----VIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R + R+Y YLL + ++ T ++D A+L EGEH F ++
Sbjct: 126 ARFDAYGRRYRYLLESSPVRSPILQGRVGWTHLKLDPEKMQQAALL--LEGEHDFSSFRA 183
Query: 251 RSKYRRKPHKT 261
+ P KT
Sbjct: 184 AECQAKSPVKT 194
>gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum]
Length = 388
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 49/200 (24%)
Query: 72 WEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKI 131
++ +K+ +AL++ Y+G Y GL Q ++L+ ++ L+ AL KA I N +
Sbjct: 63 FDKYKKRHIALKLSYLGWQYCGLVPQ-GCYTLTVMDRLLD-ALEKAKLIE-----NRSEC 115
Query: 132 AWARSSRTDKGVHSLATM----------------------ICLKMEIPPDAWKDDPYGID 169
+++ RTDKGV + + I + E+P +D
Sbjct: 116 SFSVCGRTDKGVSGICQVVSFVSRSVVAEGVGVIEDSGCRISERQEVPDKE-------MD 168
Query: 170 LAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHI 229
+N +LPR+I+V + P F+ R +C R Y Y P + I S + A
Sbjct: 169 FVSILNRNLPRDIRVLAWSPVSPEFNARFDCRRRSYEYYFPESGLDIESMIDAG------ 222
Query: 230 SDFNAILNEFEGEHPFHNYT 249
N G H F N+
Sbjct: 223 -------NRLVGVHDFRNFC 235
>gi|240015157|ref|ZP_04722070.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae DGI18]
gi|240122134|ref|ZP_04735096.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID24-1]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|268687486|ref|ZP_06154348.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
gi|268627770|gb|EEZ60170.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-93-1035]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|268604599|ref|ZP_06138766.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268685331|ref|ZP_06152193.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679]
gi|268588730|gb|EEZ53406.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID1]
gi|268625615|gb|EEZ58015.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae SK-92-679]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|160881752|ref|YP_001560720.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
gi|160430418|gb|ABX43981.1| tRNA pseudouridine synthase A [Clostridium phytofermentans ISDg]
Length = 245
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+V L+V Y GT+Y G Q+Q + ++ + E T L K ++I +S
Sbjct: 2 KRVLLKVAYDGTNYCGWQVQPNAKTIEGVLNECLTKLLK------------EEIVIIGAS 49
Query: 138 RTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + IP + L+ +NAHLP +I + + + + F
Sbjct: 50 RTDAGVHAYGNVAVFDTNSRIPAE---------KLSYALNAHLPEDIVIQASMEVESDFH 100
Query: 196 PRRECNLRK-YSY 207
PR C+ RK Y Y
Sbjct: 101 PRY-CDTRKTYEY 112
>gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 34/183 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL Y G++Y G Q+Q + +TI+ E+E +L K N + + S R
Sbjct: 2 RIALLCRYDGSNYHGFQIQPNN---NTIQEEIEKSLKKI---------NKKDVRLYMSGR 49
Query: 139 TDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ ++ + IP AW K +NA +P++I++ F
Sbjct: 50 TDSGVHAYGQVLHFDTDLNIPDVAW---------VKALNATIPKDIRIVGATTVSEDFHV 100
Query: 197 RRECNLRKYSYLLPAEVIG--INSQLTAAEIDSHISDFN-----AILNEFEGEHPFHNYT 249
R + Y Y L IG I+ L + H DFN L F GEH F ++
Sbjct: 101 RYNSTQKTYYYKL---YIGREIDPFLLNY-VGKHSFDFNFEKAQESLKYFIGEHDFSSFC 156
Query: 250 ERS 252
++
Sbjct: 157 SKN 159
>gi|268683056|ref|ZP_06149918.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332]
gi|268623340|gb|EEZ55740.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae PID332]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|297623065|ref|YP_003704499.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093]
gi|297164245|gb|ADI13956.1| tRNA pseudouridine synthase A [Truepera radiovictrix DSM 17093]
Length = 260
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDE-HSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
+++ L + + GTD+ G Q+Q H + T++G LE AL G R + +
Sbjct: 2 RRIKLTLEFDGTDFFGWQVQAGAAHPVRTVQGVLEAALATLPGARPKAHA---------A 52
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK---RVNAHLPRNIKVFSILPSQRS 193
RTD GVH+LA + A D I +AK +NA LP +++V RS
Sbjct: 53 GRTDAGVHALAMV----------AHYDTDDRIPVAKVPAALNARLPPDVRVLHAEEVPRS 102
Query: 194 FDPRRECNLRKYSY 207
F+ + C R+Y Y
Sbjct: 103 FEAQFSCCYRRYLY 116
>gi|293398170|ref|ZP_06642375.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62]
gi|291611433|gb|EFF40503.1| tRNA pseudouridine synthase A [Neisseria gonorrhoeae F62]
Length = 265
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHAAAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>gi|350569920|ref|ZP_08938298.1| tRNA pseudouridine synthase A [Neisseria wadsworthii 9715]
gi|349797600|gb|EGZ51357.1| tRNA pseudouridine synthase A [Neisseria wadsworthii 9715]
Length = 273
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K++ AL + Y G+ + G Q Q D + T + LE A+ G + I +
Sbjct: 11 KQRWALILSYDGSRFFGWQKQAD--GVLTAQEALEQAIGNIAG---------EPINVIAA 59
Query: 137 SRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD GVH+ A ++ + PP AW + VN +LP+ + V + F
Sbjct: 60 GRTDTGVHASAQVVHFDALVKRPPQAW---------VRGVNTYLPQGLAVLQAIAVDSCF 110
Query: 195 DPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAI---LNEFEGEHPFHNYTER 251
R + R+Y Y+L + + + ++ D +A+ + GEH F ++
Sbjct: 111 HARFDATGRRYRYVLQSSAVRSPLLIGKVGWTHNVLDMSAMKDAVTCLVGEHDFSSFRAS 170
Query: 252 SKYRRKPHKT 261
+ P KT
Sbjct: 171 QCQAKSPVKT 180
>gi|428184307|gb|EKX53162.1| hypothetical protein GUITHDRAFT_160965 [Guillardia theta CCMP2712]
Length = 1178
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIR-ESNYGNL 128
D +P +++++ L + Y+G D++G + S+ T+EGEL L +G + + + +L
Sbjct: 820 DSSQPSKRRQICLLLAYIGNDFQG-GLTHQNPSVRTVEGELLKVLRASGALNPDPSMSSL 878
Query: 129 QKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+KI W + T+ GVH+ + + + P ++ +R+NA L ++++ +
Sbjct: 879 EKIGWTHACLTEPGVHASGQCVTVDIVKPRESLA------TFIERLNARLSGDLRILN 930
>gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
gi|254789604|sp|A1QYG5.1|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
Length = 245
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KKV ++ Y G+ Y G Q+Q + TI+GE+E L K KI +
Sbjct: 2 KKVLAKITYDGSLYYGFQIQPKK---PTIQGEIEKVLEKISK---------TKIKIHSAG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ +I ++I +L +N+ L +I++ + + F PR
Sbjct: 50 RTDKGVHARGQIISFYIKINIKLK-------NLKTAINSLLKDDIRIIKLKYVEDKFQPR 102
Query: 198 RECNLRKYSYLL 209
+ RKYSY +
Sbjct: 103 FDAKRRKYSYYI 114
>gi|219666536|ref|YP_002456971.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
gi|219536796|gb|ACL18535.1| tRNA pseudouridine synthase A [Desulfitobacterium hafniense DCB-2]
Length = 271
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+ + L+V Y GT Y G Q Q + H TI+G LET K + E ++ +
Sbjct: 4 KRNICLKVAYDGTYYHGFQRQPEFHG-PTIQGTLETVWAKL--VEE-------QVTLNTA 53
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTD GVH+ ++ + IP D + K N+ LPR+I++ + + F
Sbjct: 54 GRTDTGVHAAGQVVNFRTGARIPVD---------KIPKAFNSLLPRDIRILAAQEAAEDF 104
Query: 195 DPRRECNLRKYSY 207
R ++Y Y
Sbjct: 105 HARFSAKWKRYDY 117
>gi|118497491|ref|YP_898541.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|195536184|ref|ZP_03079191.1| tRNA pseudouridine synthase A [Francisella novicida FTE]
gi|254372827|ref|ZP_04988316.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida GA99-3549]
gi|166228699|sp|A0Q6C2.1|TRUA_FRATN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|118423397|gb|ABK89787.1| tRNA pseudouridine synthase A [Francisella novicida U112]
gi|151570554|gb|EDN36208.1| tRNA pseudouridine synthase A [Francisella novicida GA99-3549]
gi|194372661|gb|EDX27372.1| tRNA pseudouridine synthase A [Francisella tularensis subsp.
novicida FTE]
Length = 258
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HS S ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGRNYCG--WQRQSHSPS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICL--KMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ E P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSDAERPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>gi|456389439|gb|EMF54879.1| truA protein [Streptomyces bottropensis ATCC 25435]
Length = 288
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G+++ G Q T++GE+E AL RE+ + + R
Sbjct: 11 RVRLDLSYDGSEFSGWAKQ--AGGRRTVQGEIEDALRTVTRSREAFELTV-------AGR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P W++ + L KR+ LPR+++V+++ + F+ R
Sbjct: 62 TDAGVHARGQVA--HVDLPETVWRE--HHEKLLKRLAGRLPRDVRVWALREAPSGFNARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLT--------AAEIDSHISDFNAILNEFEGEHPFHNYTE 250
R+Y+Y + G++ L A ++D+ N GEH F Y +
Sbjct: 118 SAVWRRYAYRVTDNPGGVDPLLRSHVLWHDWALDVDA----MNEAARLLLGEHDFAAYCK 173
Query: 251 R 251
R
Sbjct: 174 R 174
>gi|32472096|ref|NP_865090.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
gi|42559754|sp|Q7TU07.1|TRUA_RHOBA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|32397468|emb|CAD72774.1| tRNA pseudouridine synthase A [Rhodopirellula baltica SH 1]
Length = 276
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
R + L V Y GT+Y G Q+Q ++ S I+ ELE + G + +
Sbjct: 6 RPRTFHLTVAYDGTEYCGWQVQPEQRS---IQSELERVIRPLAG---------RPVRVLG 53
Query: 136 SSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
S RTD GVH++ + + + WK D + L + +N+ LP +I+V ++ ++ F
Sbjct: 54 SGRTDAGVHAIGQVARCVLPV----WKADT--VALQRAINSKLPNDIRVKAVRETRERFH 107
Query: 196 PRRECNLRKYSYLL 209
P + ++Y YL+
Sbjct: 108 PIADATGKQYQYLV 121
>gi|256390175|ref|YP_003111739.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928]
gi|256356401|gb|ACU69898.1| tRNA pseudouridine synthase A [Catenulispora acidiphila DSM 44928]
Length = 284
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 22/178 (12%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GT + G +Q T+ GEL +AL +R Q + + R
Sbjct: 11 RVRLDLAYDGTHFSGWAIQPKRR---TVCGELTSALSTV--LR-------QDVTLVVAGR 58
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH A+ +++P + W + + L +R+ A LP +++V+S +P+ FD R
Sbjct: 59 TDAGVH--ASGQVAHLDVPLELWAE--HEERLLRRLAAVLPGDVRVWSAVPAPVGFDARF 114
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFN-AILNE----FEGEHPFHNYTER 251
R+Y+Y + G + L ++ H + A++NE GEH F ++ ++
Sbjct: 115 AAMGRRYAYRVTDAAYGPHP-LRRNDVTWHPRTLDPALMNEAAAALLGEHDFASFCKK 171
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,271,917,271
Number of Sequences: 23463169
Number of extensions: 338986019
Number of successful extensions: 1201567
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 2431
Number of HSP's that attempted gapping in prelim test: 1196290
Number of HSP's gapped (non-prelim): 4918
length of query: 539
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 391
effective length of database: 8,886,646,355
effective search space: 3474678724805
effective search space used: 3474678724805
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)