BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009253
(539 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22928|PUSH_ARATH Putative tRNA pseudouridine synthase OS=Arabidopsis thaliana
GN=At2g30320 PE=3 SV=1
Length = 510
Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust.
Identities = 264/459 (57%), Positives = 321/459 (69%), Gaps = 37/459 (8%)
Query: 70 DKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
DKWE RKKKV +R+GYVGTDYRGLQ+QRD+ S+ TIEGELE A++KAGGIR+SNYG+L
Sbjct: 55 DKWESYRKKKVVIRIGYVGTDYRGLQIQRDDPSIKTIEGELEVAIYKAGGIRDSNYGDLH 114
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
KI WARSSRTDKGVHSLAT I LKMEIP AWKDDP G LAK ++ HLP NI+VFS+LP
Sbjct: 115 KIGWARSSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLP 174
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
S R FDPRREC LRKYSYLLP +V+GI + T+ EID HI+DFN IL EFEGE+PFHNYT
Sbjct: 175 SNRRFDPRRECTLRKYSYLLPVDVLGIKNSFTSDEIDYHITDFNEILKEFEGEYPFHNYT 234
Query: 250 ERSKYRRK-----PHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIG 304
+RS+YRRK + GR + K+ ++ SE E F + + E+
Sbjct: 235 QRSRYRRKSEQKIKQRNGRPPREPKS--------IKASESE---FREENHIEIGEEEEEK 283
Query: 305 GEISSDDEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHF 364
DE H NS RA+WLYE DE DK+S +HF
Sbjct: 284 EVDGESDE-------------------HVVTPDSDNSQVYSRAKWLYEPDETDKISGAHF 324
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
RK+F C GKLE SLGFG+VEISI GESFMLHQIRKM+GTAVAVKR+LLPRDI+ LSL K
Sbjct: 325 RKVFRCRSGKLENSLGFGFVEISIWGESFMLHQIRKMIGTAVAVKRELLPRDIIRLSLNK 384
Query: 425 HSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVS 484
+RIVLPLAPSEVL LR NSF VR P RP M+ ESEE+ K ++EFY +V +P+VS
Sbjct: 385 FTRIVLPLAPSEVLILRGNSFEVRRLP--ERPGMEATGESEEVEKEIEEFYRAVMVPQVS 442
Query: 485 KFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWK 523
FLD+ KSPW EW+++L++ + +E+L++VR W+ WK
Sbjct: 443 IFLDSEKSPWKEWVDHLDRNDGLIDEELEDVRKGWEEWK 481
>sp|Q6FV05|PUS1_CANGA tRNA pseudouridine synthase 1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=PUS1
PE=3 SV=1
Length = 549
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 183/392 (46%), Gaps = 59/392 (15%)
Query: 69 DDKWEPVR------KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRE 122
DD P+ K+KVA+ +GY GT Y G+Q TIE L A AG I +
Sbjct: 72 DDNGNPIPREPRLPKRKVAVMIGYCGTGYHGMQYNPPN---PTIEAALFKAFVDAGAISK 128
Query: 123 SNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNI 182
+N +L+K + R++RTDKGVH+ +I LKM I +DP +D ++NA+LP I
Sbjct: 129 ANSNDLKKNNFMRAARTDKGVHAGGNLISLKMII------EDPEIMD---KINANLPEGI 179
Query: 183 KVFSILPSQRSFDPRRECNLRKYSYLLPA-EVIGIN-SQLTAAEIDSHISDFNAILNE-F 239
+++ I ++FD R+ C+ R Y YLLP +IG + +I+S ++ +L+E
Sbjct: 180 RIWDIERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGTILNNDIESSKTELPGVLDEDL 239
Query: 240 EGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVE-----E 294
E + + N+ +K P + + KD EE + +E+ + KV+ E
Sbjct: 240 ESKEFWENFEAAAKKEFTPEEIAAI-------KDYSPPPREEFDDQEELYQKVKQWKLLE 292
Query: 295 SDGEEDLGIGGEISSDDEKANQNSMVSGVHQEDCCNQHANGL-KDQNSSSVIRARWLYET 353
+ I E+ + +A N + G H N H L K+ S I R++ E
Sbjct: 293 NTHRRQYRI-SEMKLNKFRAAMNQYL-GAH-----NFHNFTLGKEFKDPSAI--RFMKEI 343
Query: 354 DEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLL 413
+D F K E +V I I G+SFMLHQIRKM+ A + R
Sbjct: 344 KVSDP---------FVIGDAKAE------WVSIKIHGQSFMLHQIRKMISMATLIARCGT 388
Query: 414 PRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
P + ++ + +I +P AP+ L L A F
Sbjct: 389 PVERISQAFGPQ-KINIPKAPALGLLLEAPVF 419
>sp|O94396|PUS1_SCHPO tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pus1 PE=1 SV=1
Length = 534
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 114/408 (27%), Positives = 184/408 (45%), Gaps = 57/408 (13%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA VGY G+ Y G+Q+ TIEG+L A KAG + N + +K+A AR+
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPS---KTIEGDLFDAFVKAGAVSSYNADDPKKVALARA 99
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ + + L ++VN HLP +I+++ ++ + SF+P
Sbjct: 100 ARTDKGVHAAGNVISLKLIMEDEK---------LIEKVNEHLPPSIRLWDVIRTINSFNP 150
Query: 197 RRECNLRKYSYLLP-------------AEVIGINSQLTAAEIDS-HISDFNAILNEFEGE 242
R C R Y Y++P I NS + A I+ +I+ + L EG+
Sbjct: 151 RTYCESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPINKENINQLSRSLFYEEGK 210
Query: 243 HPFHNYTERSK-----YRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDG 297
+ +Y +K Y + P G V+ +K A + E ++G E G S D
Sbjct: 211 EFWDDYDIAAKEILSLYEQDPE--GFVNPYSKRGA-AALANSENNKGSEAGVSAKTNPDM 267
Query: 298 EED-LGIGGEISSDD--EKANQNSMVSGVHQEDCCNQHANGLKDQNSS-SVIRARWLYET 353
+ D I E D E + S + ++ + +H LK +N S R + ET
Sbjct: 268 DSDSSAIVNEFLKPDSVEDESAGSKIDPSYRLERALKHIEVLKLKNYRISADRLSVIRET 327
Query: 354 DEADKLSASHFRKIFSCSCGKLEKS-------------LGFG---YVEISISGESFMLHQ 397
++ H F+ +K+ G ++ + G+SFMLHQ
Sbjct: 328 --LNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGDTEWISCKVHGQSFMLHQ 385
Query: 398 IRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRANSF 445
IRKM+ A+ V R P + + + K ++I +P P L L + F
Sbjct: 386 IRKMIALAILVVRTGCPVERIQDAFKK-TKINIPKGPGFGLLLESPFF 432
>sp|Q755C8|PUS1_ASHGO tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PUS1 PE=3
SV=2
Length = 528
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 82/144 (56%), Gaps = 12/144 (8%)
Query: 67 SSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYG 126
+S++K + K+KVA+ VGY GT Y G+Q TIE EL A KAG I +N
Sbjct: 56 TSEEKEARLPKRKVAVMVGYCGTGYHGMQYNPPNR---TIEAELFEAFVKAGAISRANST 112
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+L+K + R++RTDKGVH+ +I LK+ I A KD ++N HLP I+V+
Sbjct: 113 DLKKNGFMRAARTDKGVHAGGNVISLKLIIEDPAIKD---------KINEHLPPGIRVWG 163
Query: 187 ILPSQRSFDPRRECNLRKYSYLLP 210
I ++FD R+ C R Y YLLP
Sbjct: 164 ISRVNKAFDCRKLCGSRWYEYLLP 187
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A V R + + S +I +P AP+ L L +
Sbjct: 338 WVSIKIHGQSFMLHQIRKMISMATLVARCNCSPERIAQSYGPQ-KINIPKAPALGLLLES 396
>sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PUS1 PE=3 SV=1
Length = 528
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 89/146 (60%), Gaps = 14/146 (9%)
Query: 65 PNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESN 124
P +D+ +P K+KVA +GY GT Y G+Q+ + TIEG++ A KAG I ++N
Sbjct: 74 PLVADEVRQP--KRKVACMIGYCGTGYHGMQLNPPQ---KTIEGDIFQAFVKAGAISQNN 128
Query: 125 YGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKV 184
+ +K A+ R++RTDKGVH+ +I LKM I + ++ +++N+HLP ++V
Sbjct: 129 ADDPKKSAFMRAARTDKGVHAAGNVISLKMIIEDE---------NIVEKINSHLPEQLRV 179
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLP 210
+ + + ++F+ R+ C+ R Y YL+P
Sbjct: 180 WGVSRTNKAFECRKLCSSRVYEYLMP 205
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 362 SHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVG-TAVAVKRKLLPRDILTL 420
S R + S +C G +V I I G+SFMLHQIRKM+ A++V+ P+ ++
Sbjct: 337 SAMRTMKSLTCSDPFLIDGTEWVSIKIHGQSFMLHQIRKMISMVALSVRCNADPQKLIPQ 396
Query: 421 SLAKHSRIVLPLAPSEVLFL 440
+ K +RI +P AP+ L L
Sbjct: 397 TFEK-ARINIPKAPALGLLL 415
>sp|Q12211|PUS1_YEAST tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUS1 PE=1 SV=1
Length = 544
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 78/134 (58%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ VGY GT Y G+Q TIE L A +AG I + N +L+K + R+
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPPN---PTIESALFKAFVEAGAISKDNSNDLKKNGFMRA 130
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LKM I +DP D+ +++N LP I+V+ I ++FD
Sbjct: 131 ARTDKGVHAGGNLISLKMII------EDP---DIKQKINEKLPEGIRVWDIERVNKAFDC 181
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 182 RKMCSSRWYEYLLP 195
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
++ I I G+SFMLHQIRKMV A + R P + ++ + + +I +P AP+ L L A
Sbjct: 346 WISIKIHGQSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQ-KINIPKAPALGLLLEA 404
Query: 443 NSF 445
F
Sbjct: 405 PVF 407
>sp|Q6CWQ8|PUS1_KLULA tRNA pseudouridine synthase 1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=PUS1 PE=3 SV=1
Length = 553
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 80/134 (59%), Gaps = 12/134 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K+KVA+ +GY GT Y G+Q TIE EL A +AG I ++N +L+K + R+
Sbjct: 98 KRKVAVMIGYCGTGYHGMQYNPPN---DTIEKELFEAFVRAGAISKANSTDLKKNGFQRA 154
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
+RTDKGVH+ +I LK+ I +DP ++ +++N LP I+V+ I ++FD
Sbjct: 155 ARTDKGVHAGGNVISLKLII------EDP---EVKEKINNELPDQIRVWDISRVNKAFDC 205
Query: 197 RRECNLRKYSYLLP 210
R+ C+ R Y YLLP
Sbjct: 206 RKMCSSRWYEYLLP 219
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V I I G+SFMLHQIRKM+ A + R P + + + + +I +P AP+ L L A
Sbjct: 369 WVSIKIHGQSFMLHQIRKMISMATLITRCFSPLERIRQAYGQE-KINIPKAPALGLLLEA 427
Query: 443 ---NSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSK 485
+ ++ R + P + +SE + Y + L EV++
Sbjct: 428 PVYDGYNTRLQEFGYDPIDFSKYQSEMDTFKMKHIYDKIYLEEVNE 473
>sp|Q4KM92|TRUA_RAT tRNA pseudouridine synthase A, mitochondrial OS=Rattus norvegicus
GN=Pus1 PE=2 SV=2
Length = 423
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCYKGTHNF 241
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 242 HNFTSQKGPR 251
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>sp|Q9Y606|TRUA_HUMAN tRNA pseudouridine synthase A, mitochondrial OS=Homo sapiens
GN=PUS1 PE=1 SV=3
Length = 427
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 58 HTLTRPTPNSSDDKWEPVRKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKA 117
H + +++ E K+K+ L + Y G Y G+Q TIE +L +AL ++
Sbjct: 64 HPAKKLKSGGDEERREKPPKRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRS 123
Query: 118 GGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAH 177
G I E++ +++K+++ R +RTDKGV + ++ LK+ W D D+ +++N+H
Sbjct: 124 GCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILEKINSH 173
Query: 178 LPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEI----DSHISDFN 233
LP +I++ + F+ + C+ R Y YLLP + E + N
Sbjct: 174 LPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVN 233
Query: 234 AILNEFEGEHPFHNYT 249
+L ++G H FHN+T
Sbjct: 234 RLLACYKGTHNFHNFT 249
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G + I + G+SFM+HQIRKMVG VA+ + P +L S ++ +P AP L
Sbjct: 276 GLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGT-EKVDVPKAPGLGLV 334
Query: 440 LRANSF 445
L F
Sbjct: 335 LERVHF 340
>sp|Q9WU56|TRUA_MOUSE tRNA pseudouridine synthase A, mitochondrial OS=Mus musculus
GN=Pus1 PE=1 SV=2
Length = 423
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 17/190 (8%)
Query: 73 EPVRK---KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQ 129
EP RK +K+ L + Y G Y G+Q TIE +L +AL +AG I E++ +++
Sbjct: 72 EPPRKLPKRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMR 131
Query: 130 KIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILP 189
K+++ R +RTDKGV + ++ LK+ W D D+ ++N+HLP +I++ +
Sbjct: 132 KMSFQRCARTDKGVSAAGQVVSLKV------WLID----DILDKINSHLPSHIRILGLKR 181
Query: 190 SQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAE----IDSHISDFNAILNEFEGEHPF 245
F+ + +C+ R Y Y+LP + E + N +L ++G H F
Sbjct: 182 VTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACYKGTHNF 241
Query: 246 HNYTERSKYR 255
HN+T + R
Sbjct: 242 HNFTSQKGPR 251
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 365 RKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAK 424
R I C + G + I + G+SFM+HQIRKMVG VA+ + P +L S +
Sbjct: 257 RYILEMYCEEPFVREGLEFAVIKVKGQSFMMHQIRKMVGLVVAIVKGYAPESVLERSWGE 316
Query: 425 HSRIVLPLAPSEVLFLRANSF 445
++ +P AP L L F
Sbjct: 317 -EKVDVPKAPGLGLVLERVHF 336
>sp|O94295|PUS2_SCHPO tRNA pseudouridine synthase 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pus2 PE=3 SV=1
Length = 451
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 11/136 (8%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
K ++ + +GY G Y G+Q+ + L TIEG++ L K G ++ +N + + + AR+
Sbjct: 38 KVRIIILLGYSGYGYHGIQIN---NPLKTIEGDVVAVLKKLGYLKTNNI-DAEHLCIARA 93
Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAK-RVNAHLPRNIKVFSILPSQRSFD 195
+RTDKGVH+L +I L + + D P I L K +N L I+V+S+ P+ + F+
Sbjct: 94 ARTDKGVHTLRNLISLNLFV------DKPLDISLLKTELNEALCSQIRVWSVFPAPKYFN 147
Query: 196 PRRECNLRKYSYLLPA 211
PR C R Y YL+P+
Sbjct: 148 PRISCESRTYEYLIPS 163
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 357 DKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRD 416
D S S++R I S +CG + ++ ++I G SFML+QIRKM+ + + R P
Sbjct: 298 DSTSPSNYRFIESVTCGTPFVYENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTG 357
Query: 417 ILTLSLAKHSRIVLPLAPSEVLFLRANSFS 446
++ + + + + +P VL L+ FS
Sbjct: 358 LIDKAFDPNITMNISKSPGHVLLLKDIKFS 387
>sp|P53167|PUS2_YEAST tRNA pseudouridine(27/28) synthase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUS2 PE=1 SV=4
Length = 370
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 82 LRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDK 141
+ +GY G+ Y G+Q TIEGE+ T LF G I E N +K ++ ++RTDK
Sbjct: 1 MLLGYCGSGYYGMQYNPPH---KTIEGEILTKLFDVGAISEENSLAPKKNSFMAAARTDK 57
Query: 142 GVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECN 201
GVH++ ++ LK+ + D ++NA LP I+V+ I P + F+ R C+
Sbjct: 58 GVHAMLNLLSLKITLREDT----------VAKLNAALPPEIRVWGIQPVNKKFNARSACD 107
Query: 202 LRKYSYLLPAEVI 214
R Y YL+P ++
Sbjct: 108 SRWYQYLIPEFIL 120
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 382 GYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLR 441
G++ + I G+SFMLHQIR+MV AV R LP +I+ R +P AP++ L L
Sbjct: 245 GWICVRIHGQSFMLHQIRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLE 304
Query: 442 ANSF 445
F
Sbjct: 305 GPVF 308
>sp|A5ULI2|TRUA_METS3 tRNA pseudouridine synthase A OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=truA PE=3 SV=1
Length = 290
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ AL++GY+GT++ G Q Q D L T+E EL L K G I +L+K + +
Sbjct: 2 KRTALKIGYIGTNFHGFQRQPD---LRTVEEELIYHLRKLGYI-----DDLKKSRFRIAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVHSL +I + E +N LP +I++ + P + F PR
Sbjct: 54 RTDAGVHSLGNVISFQSEKEVR-----------VNEINNSLPDDIQILAKAPVRFGFKPR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
+R+Y Y+L + + AEI F+G H F N+T+R
Sbjct: 103 Y-AEMRQYRYVLFRSDLDLYKLNEVAEI-------------FKGTHNFTNFTKR 142
>sp|Q12VJ7|TRUA_METBU tRNA pseudouridine synthase A OS=Methanococcoides burtonii (strain
DSM 6242) GN=truA PE=3 SV=1
Length = 275
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 34/202 (16%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+G+++ G Q+Q ++ T+EGEL L + G + + N + S R
Sbjct: 2 RVALKIAYIGSNFHGSQVQLND---PTVEGELFKVLKELGIMEDPRTAN-----FISSGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH++ ++ + P + + + +N+ LP I ++ +FDPRR
Sbjct: 54 TDSGVHAMGQVVAFDTDAP---------NLAMPRVINSKLPGTIWAWAHAIVPENFDPRR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
R Y Y+L E I+ +A+++ G H F N++ R
Sbjct: 105 HALSRSYRYILYGEQFDISKIRSASKL-------------LLGSHDFSNFST----SRGS 147
Query: 259 HKTGRVSKRAKASKDAVFSRVE 280
KT R+ KR +R++
Sbjct: 148 KKTVRIVKRIDIRVSGNLTRID 169
>sp|Q0W2P8|TRUA_UNCMA tRNA pseudouridine synthase A OS=Uncultured methanogenic archaeon
RC-I GN=truA PE=3 SV=1
Length = 266
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K AL++ YVGT++ G Q Q L T+E EL AL +AG I+ KIA A R
Sbjct: 2 KTALKIAYVGTNFYGSQAQ---PGLPTVESELRKALEEAGAIKLGT-----KIAMA--GR 51
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ + P + + +N+ LP+++ ++ FDPRR
Sbjct: 52 TDAGVHALGQVVAFEQADPK---------LTAPRIINSKLPKDLWAYARAEVPDDFDPRR 102
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT--ERSKY 254
R+Y Y+L A + I +L + F G H F N++ E KY
Sbjct: 103 HATSREYRYILYAPDV-IERRLKECS------------SRFLGTHDFTNFSSVEAGKY 147
>sp|Q8TWZ3|TRUA_METKA tRNA pseudouridine synthase A OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=truA PE=3 SV=1
Length = 256
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 24/131 (18%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VALRV Y G+ Y G Q Q D + TIEG L AL + G L+ + +A SR
Sbjct: 2 RVALRVAYDGSRYHGFQYQPD---VPTIEGALRKALSELG---------LELVGYA--SR 47
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD G H+ ++ ++ + P+ + DP +NA LP++I+V + FDPRR
Sbjct: 48 TDAGAHARYQVVVVEGD--PELAQPDP--------INARLPKDIRVIAKTEVHEEFDPRR 97
Query: 199 ECNLRKYSYLL 209
+ ++Y Y L
Sbjct: 98 DALRKEYRYFL 108
>sp|O74451|YCG6_SCHPO Putative tRNA pseudouridine synthase C16C4.06c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC16C4.06c PE=3 SV=2
Length = 413
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
RK+ V V Y GT + GLQ + + TI+ L A + G + + N + +KI
Sbjct: 35 RKRMVYCVVSYRGTGFAGLQYNAN---VKTIQDTLFQAFARVGAVVQVNADSPKKIRMCS 91
Query: 136 SSRTDKGVHSLATMICLK-MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
++RTDKGVH++ ++ LK ++ P P+ ++L VN LP I+V+ + + SF
Sbjct: 92 AARTDKGVHAIVNVLGLKVLDNQP-----LPHVVNL---VNDILPPCIRVWKMARTFNSF 143
Query: 195 DPRRECNLRKYSYLLPA 211
P C+ R Y Y LP
Sbjct: 144 SPHTVCDSRVYEYWLPV 160
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 383 YVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLFLRA 442
+V++ G+SFM HQIRKMVG + + R +L + RI +P AP+E L L
Sbjct: 268 WVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPRAPAEFLLLNQ 327
Query: 443 NSF 445
F
Sbjct: 328 PIF 330
>sp|O26928|TRUA_METTH tRNA pseudouridine synthase A OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=truA PE=3 SV=1
Length = 275
Score = 65.9 bits (159), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 79/175 (45%), Gaps = 32/175 (18%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
+K+AL+V Y+GT+Y G Q Q D + T+EG+L AL AG I + Q +
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPD---VPTVEGKLLEALEGAGIIEDPKRARFQI-----AG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD+GVH+L + E +D + ++N LPR+I+V + F R
Sbjct: 54 RTDRGVHALGNFVSFFTE-------EDIH----VNQINDLLPRDIRVLAWASVMYPFKVR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
R Y Y+L E + AE +H F G H F N++ RS
Sbjct: 103 YPLE-RHYRYILHRE--ESMDTYSMAEAAAH----------FRGTHDFSNFSRRS 144
>sp|Q09524|TG124_CAEEL Probable tRNA pseudouridine synthase tag-124 OS=Caenorhabditis
elegans GN=tag-124 PE=3 SV=1
Length = 402
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 47/196 (23%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++K+A++ Y+G ++ GL Q H+ +T+E + AL K I + K ++R
Sbjct: 29 RRKIAIQFFYLGWEHDGLVQQ--PHTQNTVENHIMQALIKTHLIED-----WTKCDFSRC 81
Query: 137 SRTDKGVHSL---ATMICLKMEIPPDA---WKDD----------------PYGIDLAKRV 174
RTDKGV + A M+ + P D+ W D PY K +
Sbjct: 82 GRTDKGVSAFKQTAAMVVRSL-CPGDSGVFWSDSTQEHQKVDYKASGEELPY----VKML 136
Query: 175 NAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNA 234
N LP+ I+VF+ P ++F+ R +CN R Y Y + + AE+
Sbjct: 137 NGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAEL--------- 187
Query: 235 ILNEFEGEHPFHNYTE 250
GEH F N+ +
Sbjct: 188 ----LVGEHDFSNFCQ 199
>sp|P70830|TRUA_BORBU tRNA pseudouridine synthase A OS=Borrelia burgdorferi (strain ATCC
35210 / B31 / CIP 102532 / DSM 4680) GN=truA PE=3 SV=2
Length = 246
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>sp|B7J0V1|TRUA_BORBZ tRNA pseudouridine synthase A OS=Borrelia burgdorferi (strain ZS7)
GN=truA PE=3 SV=1
Length = 246
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + T++GE+E AL K N +K+ S
Sbjct: 2 KKILAEIAYDGSIYHGFQIQPTK---PTVQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I ++I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKRQIITFDIKINIQLN-------NLKKALNAILLKNSIKILKLRYVKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + ++ IS+ N + G+H F ++
Sbjct: 103 RFSAQKRKYSYCILNSDNYYPWE--GYQAHYVNKKLS--ISNLNQMAKTLIGKHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYFAKFKKRGK 181
>sp|Q9UTB3|YL85_SCHPO Putative tRNA pseudouridine synthase C25B8.05
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25B8.05 PE=3 SV=1
Length = 450
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 67 SSDDKWEPVRKKK------VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGI 120
SS K +PVR + VA + Y G +Y GL Q + L T+EG++ AL +A I
Sbjct: 75 SSLPKLKPVRPFQLEKTVFVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHLI 134
Query: 121 RESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPR 180
+ + +++R RTDKGV ++ +I L + + I +N LP
Sbjct: 135 TDPS-----SCSFSRCGRTDKGVSAMGQVISLNVR------HSERRPIIYCDVLNRLLPA 183
Query: 181 NIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFE 240
+I++ FD R C R Y YL + G +D I N +
Sbjct: 184 DIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPG-------GSLD--IDRMNEAAALYL 234
Query: 241 GEHPFHNYTE 250
GEH F N+ +
Sbjct: 235 GEHDFRNFCK 244
>sp|Q663A0|TRUA_BORGA tRNA pseudouridine synthase A OS=Borrelia garinii (strain PBi)
GN=truA PE=3 SV=1
Length = 246
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N +K+ S
Sbjct: 2 KKILAEITYDGSIYHGFQIQPTK---PTIQGEIEKALMKI---------NKKKVKIHSSG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRN-IKVFSILPSQRSFDP 196
RTDKGVH+ +I + I +L K +NA L +N IK+ + + SF P
Sbjct: 50 RTDKGVHAKKQIITFDININIQLN-------NLKKALNAILLKNSIKILKLKYMKNSFHP 102
Query: 197 RRECNLRKYSYLL-------PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYT 249
R RKYSY + P E G + +++ IS+ N + G H F ++
Sbjct: 103 RFNAQKRKYSYRILNSNNYYPWE--GYQAHYVNKKLN--ISNLNQMAKILIGNHDFTTFS 158
Query: 250 ---ERSKYRRKPHKTGRVSKRAK 269
++SK + + + KR K
Sbjct: 159 CIKDKSKSKFRHIYLAKFKKRGK 181
>sp|A7HKV8|TRUA_FERNB tRNA pseudouridine synthase A OS=Fervidobacterium nodosum (strain
ATCC 35602 / DSM 5306 / Rt17-B1) GN=truA PE=3 SV=1
Length = 246
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VA+ Y GTD+ G Q+Q +++ T++GELE AL K I Y +
Sbjct: 2 RRVAIEFSYDGTDFFGYQIQ---NNVRTVQGELEKALEKVFKIHIDTYA---------AG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTD GVH+ ++ + P D ++ D+ +NA+LP +I + + + +F+PR
Sbjct: 50 RTDTGVHANGQVVSF--DCPNDRLMEN----DIKNAINANLPGDIYIKKVWFTHPTFNPR 103
Query: 198 RECNLRKYSYLL 209
E R Y Y +
Sbjct: 104 YEAKRRIYHYYI 115
>sp|P31115|PUS3_YEAST tRNA pseudouridine(38/39) synthase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DEG1 PE=1 SV=1
Length = 442
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 80 VALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRT 139
+ALR Y+G +Y GL +Q++ L T+EG + A+ K + LQ ++R RT
Sbjct: 94 IALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSM---VLQDYKFSRCGRT 150
Query: 140 DKGVHSLATMICLKMEIP-PDAWKDDPYG----IDLAKRVNAHLPRNIKVFSI-LPSQRS 193
DKGV ++ +I L++ D + DP I +N LP +I++ ++ L +
Sbjct: 151 DKGVSAMNQVISLEVRSNLTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPN 210
Query: 194 FDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTE 250
FD R C R Y Y+ + + I AA F GE F N+ +
Sbjct: 211 FDARFSCVHRHYKYIFNGKNLNIEKMSKAASY-------------FVGERDFRNFCK 254
>sp|Q59S63|PUS1_CANAL tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PUS1 PE=3 SV=1
Length = 450
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 9/85 (10%)
Query: 127 NLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFS 186
+L+K + R++RTDKGVH+ +I LKM I +DP ++ ++N LP+ I+++
Sbjct: 35 HLKKSGFQRAARTDKGVHAAGNVISLKMII------EDP---EIINKINDLLPKQIRIWG 85
Query: 187 ILPSQRSFDPRRECNLRKYSYLLPA 211
I + + FD R+ C+ R Y YLLP
Sbjct: 86 IQRATKGFDCRKCCSSRIYEYLLPT 110
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 380 GFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHSRIVLPLAPSEVLF 439
G ++ I I G+SFMLHQIRKM+ A V R LP I+ + + ++I +P AP+ L
Sbjct: 270 GTEWISIKIHGQSFMLHQIRKMIAMAALVVRLSLPCGIIN-NFFQSTKINIPKAPALGLL 328
Query: 440 LRANSF 445
L F
Sbjct: 329 LENPVF 334
>sp|Q9JI38|PUS3_MOUSE tRNA pseudouridine(38/39) synthase OS=Mus musculus GN=Pus3 PE=1
SV=2
Length = 481
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 63 RRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVESRQTSN-----YHRC 115
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDDPY----GIDLAKRV------NAHLPRNIKV 184
RTDKGV + +I L + + P +D DLAK + N LP +I+V
Sbjct: 116 GRTDKGVSAFGQVISLDLRSQFPTSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRV 175
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D I+ N ++ G H
Sbjct: 176 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLD--IATMNYAAQKYVGTHD 222
Query: 245 FHN 247
F N
Sbjct: 223 FRN 225
>sp|C6A238|TRUA_THESM tRNA pseudouridine synthase A OS=Thermococcus sibiricus (strain MM
739 / DSM 12597) GN=truA PE=3 SV=1
Length = 266
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 86/211 (40%), Gaps = 44/211 (20%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++AL++ Y GT + G Q Q D L T+EGEL L K G I + N + +SR
Sbjct: 2 RIALKIAYDGTKFYGFQRQPD---LRTVEGELIKVLKKLGIIEDVKEANFKG-----ASR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD+GV +L +I P A A+ +N HL R+I + F PR
Sbjct: 54 TDRGVSALGNVIAFNTAKPELA---------EARILNHHL-RDIWILGKAEVPEDFHPRF 103
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ Y Y L E I + AE F G H F N+ ++R+
Sbjct: 104 WAKNKIYRYYLFDEGIDVIKLKACAE-------------AFLGRHDFSNFARLEEFRKPV 150
Query: 259 HKTGRVSKRAKASKDAVFSR----VEESEGE 285
+ R+ VFSR V E EG+
Sbjct: 151 REINRID---------VFSRGRIIVVEIEGK 172
>sp|A8F526|TRUA_THELT tRNA pseudouridine synthase A OS=Thermotoga lettingae (strain ATCC
BAA-301 / DSM 14385 / TMO) GN=truA PE=3 SV=1
Length = 245
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K+ V Y GT++ G Q+Q+D + T++G E AL + Q++ +
Sbjct: 2 KRFMAIVSYDGTNFCGFQVQKD---VRTVQGMFEQALERILK---------QRVITIAAG 49
Query: 138 RTDKGVHSLATMICLK--MEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ ++C ++I ++ K+ +NA+LP +I V ++ ++F
Sbjct: 50 RTDTGVHANGQIVCFDCYLDIDEESMKNA---------MNANLPDDIYVRKVVEVDKNFH 100
Query: 196 PRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILN---------EFEGEHPFH 246
PR + R Y YL+ NSQ I ++ F LN FEGEH F
Sbjct: 101 PRFDAKRRIYHYLI------YNSQEPNLFIRNYAWWFPYKLNICKMREAAKFFEGEHDFR 154
Query: 247 NYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ + +R +T + + + RVE
Sbjct: 155 SFMKSGDHRENTVRTIYRVRVLQLRGGIILIRVE 188
>sp|Q46CU8|TRUA_METBF tRNA pseudouridine synthase A OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=truA PE=3 SV=1
Length = 269
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 30/189 (15%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q + + T+EGEL AL G I N + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQPN---VETVEGELFKALRNLGIIESPKSAN-----YTCAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ A+ D + + + +N+ L I V++ SFD RR
Sbjct: 54 TDAGVHALEQVV---------AFDTDKLNLAIPRVINSELTPGIWVWAHAEVPLSFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSKYRRKP 258
+ R Y Y++ + I+ A++ G H F N++ + +
Sbjct: 105 DAVSRHYRYVMSGKEYDISKIREASKF-------------LLGTHDFENFSRTNGEKSTV 151
Query: 259 HKTGRVSKR 267
R+ R
Sbjct: 152 RTIERIDAR 160
>sp|Q3SX07|PUS3_BOVIN tRNA pseudouridine(38/39) synthase OS=Bos taurus GN=PUS3 PE=2 SV=1
Length = 481
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VAL++ Y+G Y+G Q E++ +TIE +L AL K + N Q + R
Sbjct: 62 QRHVALKIAYLGWGYQGFASQ--ENTSNTIEEKLFEALTKTRLVE-----NRQTSNYHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPP----------DAWKDDPYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + IP + D I +N LP +I+V
Sbjct: 115 GRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVNDVATEIRYTHILNRVLPPDIRV 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
+ P + SF R C R Y Y P + I + AA+ DF
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDF 222
>sp|Q8PWT1|TRUA_METMA tRNA pseudouridine synthase A OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=truA PE=3 SV=1
Length = 269
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q S+ T+E EL AL I N + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQ---PSVETVEKELFKALRNLRIIESPKSAN-----YICAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L +I + P + + + +N+ LP I V++ FD RR
Sbjct: 54 TDAGVHALGQVIAFDTDRP---------NLAIPRIINSGLPPTIWVWAHAEVPYDFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R Y Y++ E I+ A+++ DF
Sbjct: 105 HAVSRHYRYVISGEGYDISKMREASKLLLGTHDF 138
>sp|Q9BZE2|PUS3_HUMAN tRNA pseudouridine(38/39) synthase OS=Homo sapiens GN=PUS3 PE=1
SV=3
Length = 481
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
++ VALR+ Y+G Y+G Q E++ +TIE +L AL K + N + R
Sbjct: 62 RRHVALRIAYMGWGYQGFASQ--ENTNNTIEEKLFEALTKTRLVESRQTSN-----YHRC 114
Query: 137 SRTDKGVHSLATMICLKM--EIPPDAWKDD----------PYGIDLAKRVNAHLPRNIKV 184
RTDKGV + +I L + + P +D I +N LP +I++
Sbjct: 115 GRTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRI 174
Query: 185 FSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHP 244
+ P + SF R C R Y Y P A++D D+ A ++ G H
Sbjct: 175 LAWAPVEPSFSARFSCLERTYRYFFP-----------RADLDIVTMDYAA--QKYVGTHD 221
Query: 245 FHN 247
F N
Sbjct: 222 FRN 224
>sp|A1BFF0|TRUA_CHLPD tRNA pseudouridine synthase A OS=Chlorobium phaeobacteroides
(strain DSM 266) GN=truA PE=3 SV=1
Length = 258
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 29/184 (15%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQK-IAWARS 136
K + + + Y GT Y G QR S T++GE+E L + LQ+ I A +
Sbjct: 10 KNIRITIEYDGTGYAG--WQRQAGSFCTVQGEIERILSQI----------LQEDIRLAGA 57
Query: 137 SRTDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
RTDKGVH+ A + K + PD + +NA LP I++ L F
Sbjct: 58 GRTDKGVHARAQIATFKSRSSLGPD---------RMVHSMNALLPNTIRISDPLVVPEGF 108
Query: 195 DPRRECNLRKYSYLL---PAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R R+Y Y + P+ V+G S + +D + N + + GEH F +++
Sbjct: 109 HARHSAKEREYRYFVREEPSAVLGRFSGCSYGSLD--LMSMNRVASYVLGEHDFSVFSKE 166
Query: 252 SKYR 255
++ R
Sbjct: 167 TRDR 170
>sp|Q0AUL4|TRUA_SYNWW tRNA pseudouridine synthase A OS=Syntrophomonas wolfei subsp.
wolfei (strain Goettingen) GN=truA PE=3 SV=1
Length = 249
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 23/133 (17%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
++ L + Y G++Y G Q+Q++ +T++ ELE A+++ G R + I A R
Sbjct: 3 RIKLLLEYDGSNYHGFQLQKNA---NTVQAELEKAIYRLSGERAT-------IVCA--GR 50
Query: 139 TDKGVHSLATMICLKM--EIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ ++ IP D W A +N+ LP +I+V ++ F+P
Sbjct: 51 TDAGVHAWGQVVAFDSCSTIPGDRW---------AYALNSQLPEDIQVLESQETRAEFNP 101
Query: 197 RRECNLRKYSYLL 209
R + + Y YL+
Sbjct: 102 RFDALKKCYGYLI 114
>sp|Q2NHB4|TRUA_METST tRNA pseudouridine synthase A OS=Methanosphaera stadtmanae (strain
DSM 3091) GN=truA PE=3 SV=1
Length = 274
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 28/175 (16%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
++VAL++ Y+G+++ G Q Q + T+EGEL +FK I E + ++ +
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPN---YRTVEGEL-LRVFKETNIIEDTW----TAHYSVAG 53
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVHS +I D+ I+ ++N LP +IK+ F R
Sbjct: 54 RTDKGVHSTGNVISF--------ITDEDIHIN---QLNGLLPDDIKIIGEARVPYGFKVR 102
Query: 198 RECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
R Y+Y+ P S +D I+ + + F G+H F N+++R+
Sbjct: 103 FPLT-RTYTYIQPI------SPFEKKNLD--ITKMHVAMESFIGKHNFRNFSKRN 148
>sp|O28544|TRUA_ARCFU tRNA pseudouridine synthase A OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=truA PE=3 SV=1
Length = 265
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 72/175 (41%), Gaps = 41/175 (23%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
K A ++ Y G ++ G Q Q D+ T+EGE+ AL + G ++ + R
Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQR---TVEGEVINALRRLG---------VENPRLRSAGR 50
Query: 139 TDKGVHSLATMICLKME--IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
TD GVH+ +I E I P + +NA LP +I ++ FDP
Sbjct: 51 TDAGVHAYGQVISFYSEDKIFP-------------RMLNAELPEDITAWAWAKVSEDFDP 97
Query: 197 RRECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
RR R Y+Y++ D IS + E G H F N+T++
Sbjct: 98 RR-AKSRVYTYVMYGS-------------DYDISAMRKAVKELIGVHDFSNFTKK 138
>sp|O86776|TRUA_STRCO tRNA pseudouridine synthase A OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=truA PE=3 SV=1
Length = 284
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 19/178 (10%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y G+++ G Q T++GE+E AL RE+ + + R
Sbjct: 11 RVRLDLSYDGSEFSGWAKQ--AGGRRTVQGEIEDALRTVTRSRETYELTV-------AGR 61
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + + L KR+ LPR+++V+++ + F+ R
Sbjct: 62 TDAGVHARGQVA--HVDLPREVWAE--HHVKLLKRLAGRLPRDVRVWALREAPSGFNARF 117
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSH-----ISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ L + H + NA GEH F Y ++
Sbjct: 118 SAVWRRYAYRVTDNPGGVDPLLR-GHVLWHDWPLDVDAMNAAARGLLGEHDFAAYCKK 174
>sp|Q8TU65|TRUA_METAC tRNA pseudouridine synthase A OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=truA PE=3
SV=1
Length = 269
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+VAL++ Y+GT++ G Q+Q + + T+E EL AL I + + + R
Sbjct: 2 RVALKLAYIGTEFHGSQIQPN---VETVEKELFKALRNLSIIESPKSAD-----YTCAGR 53
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+L ++ E P + + + +N+ LP I ++ FD RR
Sbjct: 54 TDAGVHALGQVVAFDTEKP---------NLAIPRVINSELPPAIWAWAHAEVPYYFDARR 104
Query: 199 ECNLRKYSYLLPAEVIGINSQLTAAEIDSHISDF 232
R Y Y++ E I+ A+++ DF
Sbjct: 105 SAVSRHYHYVMSGEDYDISKMREASKLLLGTHDF 138
>sp|A6LLJ7|TRUA_THEM4 tRNA pseudouridine synthase A OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=truA PE=3 SV=1
Length = 244
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 27/208 (12%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETAL---FKAGGIRESNYGNLQKIAWA 134
K+ A+ Y GT++ G Q Q + + T++GELE AL FK ++I
Sbjct: 2 KRFAIEFSYDGTNFFGYQGQPN---VRTVQGELEKALERIFK------------ERIFTQ 46
Query: 135 RSSRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSF 194
+ RTD GVH+ + I D ID+ +NA+LP +I V +++F
Sbjct: 47 GAGRTDAGVHANGQVAAFNCPI------DRLAAIDIKNALNANLPEDIYVKKAWEVEKNF 100
Query: 195 DPRRECNLRKYSYLLPAEVIGI--NSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERS 252
+PR R Y YL+ + + + + +I EGEH F ++ ++
Sbjct: 101 NPRFRAKKRIYHYLVSTNEKDVFKRNYVWHFKYKLNIEAMRIAARYLEGEHDFSSF-KKG 159
Query: 253 KYRRKPHKTGRVSKRAKASKDAVFSRVE 280
++ P +T + K+ + RVE
Sbjct: 160 NDKKNPIRTVYRIRILNVKKELILIRVE 187
>sp|A7NCA0|TRUA_FRATF tRNA pseudouridine synthase A OS=Francisella tularensis subsp.
holarctica (strain FTNF002-00 / FTA) GN=truA PE=3 SV=1
Length = 258
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HSLS ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSLS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSNAYRPLSAWQ---------RGVNALLPQDIKILAVQQVNNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>sp|Q0BLV1|TRUA_FRATO tRNA pseudouridine synthase A OS=Francisella tularensis subsp.
holarctica (strain OSU18) GN=truA PE=3 SV=1
Length = 258
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HSLS ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSLS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSNAYRPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>sp|Q2A3D7|TRUA_FRATH tRNA pseudouridine synthase A OS=Francisella tularensis subsp.
holarctica (strain LVS) GN=truA PE=3 SV=1
Length = 258
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 23/134 (17%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
K L++ Y G +Y G QR HSLS ++ ELE AL K Q I +
Sbjct: 2 KNYLLQIEYFGKNYCG--WQRQSHSLS-VQEELEKALSKIAN---------QNIEVTCAG 49
Query: 138 RTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFD 195
RTD GVH+ + ++ P AW+ + VNA LP++IK+ ++ +F+
Sbjct: 50 RTDTGVHATSQIVNFYSNAYRPLSAWQ---------RGVNALLPQDIKILAVQQVDNNFN 100
Query: 196 PRRECNLRKYSYLL 209
R R Y+Y++
Sbjct: 101 SRFTAINRTYNYII 114
>sp|Q82DM1|TRUA_STRAW tRNA pseudouridine synthase A OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=truA PE=3 SV=1
Length = 285
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 79 KVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSR 138
+V L + Y GT++ G Q T++GE+E AL E+ Y + R
Sbjct: 11 RVRLDLSYDGTEFSGWAKQ--AAGRRTVQGEIEDALRTVTRSGETTY------ELTVAGR 62
Query: 139 TDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRR 198
TD GVH+ + +++P + W + + L KR+ LP++++V+S+ + F+ R
Sbjct: 63 TDAGVHARGQVA--HVDLPGELWAE--HQEKLLKRLAGRLPKDVRVWSLTEAPSGFNARF 118
Query: 199 ECNLRKYSYLLPAEVIGIN----SQLTAAEIDSHISDFNAILNEFEGEHPFHNYTER 251
R+Y+Y + G++ S + + + N GEH F Y ++
Sbjct: 119 SAIWRRYAYRVTDNTGGVDPLLRSHVLWHDWPLDVDAMNEAARRLVGEHDFAAYCKK 175
>sp|Q9JXI2|TRUA_NEIMB tRNA pseudouridine synthase A OS=Neisseria meningitidis serogroup B
(strain MC58) GN=truA PE=3 SV=1
Length = 265
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>sp|B5RQJ5|TRUA_BORRA tRNA pseudouridine synthase A OS=Borrelia recurrentis (strain A1)
GN=truA PE=3 SV=1
Length = 245
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N K+ +
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTK---PTIQGEIEKALEKI---------NKTKVKIQSAG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ +I ++I + +L +N+ L +I++ + F PR
Sbjct: 50 RTDKGVHAKRQIISFYIKININLK-------NLKTAINSLLKNDIRIIKLKYVSNEFQPR 102
Query: 198 RECNLRKYSYLL 209
RKY+Y +
Sbjct: 103 FHAKKRKYTYYI 114
>sp|B5RLM0|TRUA_BORDL tRNA pseudouridine synthase A OS=Borrelia duttonii (strain Ly)
GN=truA PE=3 SV=1
Length = 245
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 19/132 (14%)
Query: 78 KKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSS 137
KK+ + Y G+ Y G Q+Q + TI+GE+E AL K N K+ +
Sbjct: 2 KKILAEIAYDGSLYHGFQIQPTK---PTIQGEIEKALEKI---------NKTKVKIQSAG 49
Query: 138 RTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPR 197
RTDKGVH+ +I ++I + +L +N+ L +I++ + F PR
Sbjct: 50 RTDKGVHAKRQIISFYIKININLK-------NLKTAINSLLKNDIRIIKLKYVSNEFQPR 102
Query: 198 RECNLRKYSYLL 209
RKY+Y +
Sbjct: 103 FHAKKRKYTYYI 114
>sp|A1KWB6|TRUA_NEIMF tRNA pseudouridine synthase A OS=Neisseria meningitidis serogroup C
/ serotype 2a (strain ATCC 700532 / FAM18) GN=truA PE=3
SV=1
Length = 265
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>sp|Q9JWF1|TRUA_NEIMA tRNA pseudouridine synthase A OS=Neisseria meningitidis serogroup A
/ serotype 4A (strain Z2491) GN=truA PE=3 SV=1
Length = 265
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q D + T++ LETAL + G + ++
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAD--GVPTVQAALETALAQIAG---------EAVSTTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTTAARPQQAW---------VRGVNAHLPEGIAVLHARQVAPE 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + R Y YLL
Sbjct: 105 FHARFDAYGRHYRYLL 120
>sp|Q5F5V8|TRUA_NEIG1 tRNA pseudouridine synthase A OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=truA PE=3 SV=1
Length = 265
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWAR 135
+K++ A+ + Y G+ + G Q Q + T++ LETAL + G + +A
Sbjct: 5 QKQRWAITLSYDGSRFYGWQKQAG--GVPTVQAALETALARIAG---------ESVATTV 53
Query: 136 SSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRS 193
+ RTD GVH+ A ++ P AW + VNAHLP I V
Sbjct: 54 AGRTDTGVHATAQVVHFDTAAVRPAQAW---------IRGVNAHLPEGIAVLHARQVAPG 104
Query: 194 FDPRRECNLRKYSYLL 209
F R + + R Y YLL
Sbjct: 105 FHARFDASGRHYRYLL 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,234,911
Number of Sequences: 539616
Number of extensions: 8172596
Number of successful extensions: 28773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 28085
Number of HSP's gapped (non-prelim): 931
length of query: 539
length of database: 191,569,459
effective HSP length: 122
effective length of query: 417
effective length of database: 125,736,307
effective search space: 52432040019
effective search space used: 52432040019
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)