Query 009253
Match_columns 539
No_of_seqs 215 out of 1348
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 22:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj0_A Pseudouridine synthase 100.0 4.9E-65 1.7E-69 512.6 26.0 241 76-447 2-248 (264)
2 1vs3_A TRNA pseudouridine synt 100.0 3.2E-65 1.1E-69 510.1 22.5 241 77-446 1-247 (249)
3 2jvf_A De novo protein M7; tet 21.2 62 0.0021 25.8 2.8 24 108-140 36-59 (96)
4 2v9k_A Uncharacterized protein 21.1 1.8E+02 0.0063 31.5 7.4 99 104-211 317-421 (530)
5 3fy6_A Integron cassette prote 12.2 2.2E+02 0.0076 24.2 4.2 53 470-530 62-116 (126)
6 3h7i_A Ribonuclease H, RNAse H 9.5 1.4E+02 0.0048 30.1 2.5 93 414-524 185-280 (305)
7 3da5_A Argonaute; PAZ domain, 9.4 83 0.0028 26.8 0.6 54 394-451 1-56 (128)
8 1qys_A TOP7; alpha-beta, novel 8.0 2.6E+02 0.0089 22.6 2.9 28 106-142 32-59 (106)
9 3cec_A Putative antidote prote 7.6 7.4E+02 0.025 19.3 5.9 49 481-529 46-94 (104)
10 3trb_A Virulence-associated pr 7.2 7E+02 0.024 20.2 5.5 47 481-527 42-88 (104)
No 1
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=4.9e-65 Score=512.58 Aligned_cols=241 Identities=22% Similarity=0.332 Sum_probs=207.9
Q ss_pred ccceEEEEEEEeCCCCccccccCCCCCCCCHHHHHHHHHHHhcCCCcccCCCcceeeeeecccCCccccccccEEEEEec
Q 009253 76 RKKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKME 155 (539)
Q Consensus 76 ~krkval~v~Y~GT~Y~G~Q~Q~~~~~~~TIE~eLE~AL~kag~I~e~n~~~~~ki~~~rSsRTDKGVHA~~qVvs~kl~ 155 (539)
+|++|+|.|+|+||+|+|||+|++ .+|||++||+||.++++ .++.|.+||||||||||+|||+||++.
T Consensus 2 Pm~r~~l~i~YdGt~y~GwQ~Q~~---~~TVq~~Le~AL~~~~~---------~~v~~~~agRTDaGVHA~gqv~~f~~~ 69 (264)
T 1dj0_A 2 PVYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVAN---------EPITVFCAGRTDAGVHGTGQVVHFETT 69 (264)
T ss_dssp CCEEEEEEEEECCTTSSCSCCTTC---SSCHHHHHHHHHHHHHT---------SCCCEEESSCCCTTCEEEEEEEEEEES
T ss_pred CccEEEEEEEEeCCCceeEEECcC---CCCHHHHHHHHHHHHhC---------CCeEEEEeccCCCCCchhhEEEEEEEC
Confidence 688999999999999999999986 48999999999999976 479999999999999999999999986
Q ss_pred CCCCCCCCCCchhHHHHHHHhcCCCCEEEEEEeecCCCCCccCCCCCeEEEEEccccccccC-----CcchhhhhhhhHH
Q 009253 156 IPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGIN-----SQLTAAEIDSHIS 230 (539)
Q Consensus 156 i~~~~~~~dp~~~~l~~~LN~~LP~dIRV~~i~rV~~sF~AR~~c~~R~Y~YllP~~~l~~~-----~~~~~~~i~~~i~ 230 (539)
.+. +...++..||++||+||+|+++.+|+.+||||++|.+|+|+|+|+....... ...... ..|++
T Consensus 70 ~~~-------~~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~--~lD~~ 140 (264)
T 1dj0_A 70 ALR-------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE--PLDAE 140 (264)
T ss_dssp CCC-------CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCS--CCCHH
T ss_pred CCC-------CHHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCC--CCCHH
Confidence 331 3457899999999999999999999999999999999999999997643211 011112 23699
Q ss_pred HHHHHHhhcccccccccccccccccCCCCCCccccccccchhhhhhhhcccccCCCCCcccccccCCccccCCCCCccCc
Q 009253 231 DFNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSD 310 (539)
Q Consensus 231 ~~~~~l~~feGtHdFhnFT~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 310 (539)
+|+++++.|+|+|||+|||.... .
T Consensus 141 ~M~~aa~~l~G~HDF~~F~~~~~-----~--------------------------------------------------- 164 (264)
T 1dj0_A 141 RMHRAAQCLLGENDFTSFRAVQC-----Q--------------------------------------------------- 164 (264)
T ss_dssp HHHHHHGGGCEEEECGGGCCTTC-----C---------------------------------------------------
T ss_pred HHHHHHHHhcCcccHHHhccCCC-----C---------------------------------------------------
Confidence 99999999999999999986321 0
Q ss_pred hhhhhccccccCcccccccccccCCcccCCCcchhhhhhcccccccccccccceEEEEEeeccccccccCccEEEEEEEe
Q 009253 311 DEKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISG 390 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~dr~~~s~~R~I~s~~~~~~~~~~g~~~v~i~I~G 390 (539)
..+++|+|+++++.+ ..+++.|+|+|
T Consensus 165 -------------------------------------------------~~s~vR~I~~~~v~~-----~~~~i~~~i~g 190 (264)
T 1dj0_A 165 -------------------------------------------------SRTPWRNVMHINVTR-----HGPYVVVDIKA 190 (264)
T ss_dssp -------------------------------------------------CSCCEEEEEEEEEEE-----ETTEEEEEEEE
T ss_pred -------------------------------------------------CCCcEEEEEEEEEEE-----CCCEEEEEEEE
Confidence 036689999998865 24799999999
Q ss_pred CchhhHHHHHHHHHHHHHHccCCCHHHHHHHHhcc-CCCCCCCCCCCCeeEeccccCC
Q 009253 391 ESFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKH-SRIVLPLAPSEVLFLRANSFSV 447 (539)
Q Consensus 391 qSFLlhQIRkMVG~avaV~rG~~p~~~i~~~L~~~-~ri~iP~APa~GL~L~~v~f~~ 447 (539)
+|||+||||+|||+|++||+|.++++.|+.+|... .+..+|+|||+||||.+|.|+.
T Consensus 191 ~~FL~~mVR~mvG~L~~vG~G~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~V~Y~~ 248 (264)
T 1dj0_A 191 NAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 248 (264)
T ss_dssp SCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEEEEEEECCG
T ss_pred chHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeeccCc
Confidence 99999999999999999999999999999999754 4578999999999999999974
No 2
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-65 Score=510.10 Aligned_cols=241 Identities=26% Similarity=0.345 Sum_probs=205.4
Q ss_pred cceEEEEEEEeCCCCccccccCCCCCCCCHHHHHHHHHHHhcCCCcccCCCcceeeeeecccCCccccccccEEEEEecC
Q 009253 77 KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI 156 (539)
Q Consensus 77 krkval~v~Y~GT~Y~G~Q~Q~~~~~~~TIE~eLE~AL~kag~I~e~n~~~~~ki~~~rSsRTDKGVHA~~qVvs~kl~i 156 (539)
|++|+|.|+|+||+|+|||+|++. .+|||++||+||.++ + .++.|.+||||||||||+|||+||++..
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~--~~TVq~~Le~AL~~~-~---------~~v~~~~agRTDaGVHA~gqv~~f~~~~ 68 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRG--LRTVQGELERALPGI-G---------ALPKAVAAGRTDAGVHALAMPFHVDVES 68 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTT--CCCHHHHHHHHGGGG-T---------BCSCCEESSCCBTTCEEEEEEEEEEECS
T ss_pred CcEEEEEEEEECCCceeEeECCCC--CCCHHHHHHHHHHHc-C---------CcceEEEeccCcCCcCccccEEEEEECC
Confidence 578999999999999999999763 289999999999999 3 5899999999999999999999999864
Q ss_pred CCCCCCCCCchhHHHHHHHhcCCCCEEEEEEeecCCCCCccCCCCCeEEEEEccccccccCCcchhh-----hhhhhHHH
Q 009253 157 PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGINSQLTAA-----EIDSHISD 231 (539)
Q Consensus 157 ~~~~~~~dp~~~~l~~~LN~~LP~dIRV~~i~rV~~sF~AR~~c~~R~Y~YllP~~~l~~~~~~~~~-----~i~~~i~~ 231 (539)
+. +...++..||++||+||+|+++.+|+.+||||++|.+|+|+|+||..... +.+... .-..|+++
T Consensus 69 ~~-------~~~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~--~~~~~~~~~~~~~~ldi~~ 139 (249)
T 1vs3_A 69 AI-------PVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHP--SPLLRHRALWVRRPLDLEA 139 (249)
T ss_dssp CC-------CGGGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSC--CTTTTTTSEEECSCCCHHH
T ss_pred CC-------CHHHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCC--ChhhCCeeEEeCCCCCHHH
Confidence 31 23468999999999999999999999999999999999999999976432 111110 01236999
Q ss_pred HHHHHhhcccccccccccccccccCCCCCCccccccccchhhhhhhhcccccCCCCCcccccccCCccccCCCCCccCch
Q 009253 232 FNAILNEFEGEHPFHNYTERSKYRRKPHKTGRVSKRAKASKDAVFSRVEESEGEEDGFSKVEESDGEEDLGIGGEISSDD 311 (539)
Q Consensus 232 ~~~~l~~feGtHdFhnFT~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 311 (539)
|+++++.|+|+|||+|||....
T Consensus 140 m~~aa~~l~G~HDF~~F~~~~~---------------------------------------------------------- 161 (249)
T 1vs3_A 140 MEEALSLLLGRHNFLGFAKEET---------------------------------------------------------- 161 (249)
T ss_dssp HHHHHHHHSEEEEGGGGCSSCC----------------------------------------------------------
T ss_pred HHHHHHHhcCceeHHheecCCC----------------------------------------------------------
Confidence 9999999999999999986320
Q ss_pred hhhhccccccCcccccccccccCCcccCCCcchhhhhhcccccccccccccceEEEEEeeccccccccCccEEEEEEEeC
Q 009253 312 EKANQNSMVSGVHQEDCCNQHANGLKDQNSSSVIRARWLYETDEADKLSASHFRKIFSCSCGKLEKSLGFGYVEISISGE 391 (539)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~dr~~~s~~R~I~s~~~~~~~~~~g~~~v~i~I~Gq 391 (539)
.+++|+|+++++.+++.. ..+++.|+|+|+
T Consensus 162 -------------------------------------------------~~~vR~I~~~~v~~~~~~-~~~~i~~~i~g~ 191 (249)
T 1vs3_A 162 -------------------------------------------------RPGERELLEARLQVAEGE-AGLEVRLYFRGK 191 (249)
T ss_dssp -------------------------------------------------SCCEEEEEEEEEEEEECS-SSEEEEEEEEES
T ss_pred -------------------------------------------------CCCCcEEEEEEEEecccc-CCCEEEEEEEEC
Confidence 145799999998744322 348999999999
Q ss_pred chhhHHHHHHHHHHHHHHccCCCHHHHHHHHhccC-CCCCCCCCCCCeeEeccccC
Q 009253 392 SFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS-RIVLPLAPSEVLFLRANSFS 446 (539)
Q Consensus 392 SFLlhQIRkMVG~avaV~rG~~p~~~i~~~L~~~~-ri~iP~APa~GL~L~~v~f~ 446 (539)
|||+||||+|||+|++||+|.++++.|+.+|.... +...|+|||+||||.+|.|+
T Consensus 192 ~FL~~mVR~mvG~l~~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~L~~v~Y~ 247 (249)
T 1vs3_A 192 SFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGLYFVEAAYP 247 (249)
T ss_dssp CCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGGGEEEEEEECC
T ss_pred hHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCCCcccCcCccCCCCcEEeeeeCC
Confidence 99999999999999999999999999999997544 47899999999999999996
No 3
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.15 E-value=62 Score=25.82 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCcccCCCcceeeeeecccCC
Q 009253 108 GELETALFKAGGIRESNYGNLQKIAWARSSRTD 140 (539)
Q Consensus 108 ~eLE~AL~kag~I~e~n~~~~~ki~~~rSsRTD 140 (539)
.+||+||.++|+ ..+.+..|+-.|
T Consensus 36 qelekalaraga---------rnvqitisaend 59 (96)
T 2jvf_A 36 QELEKALARAGA---------RNVQITISAEND 59 (96)
T ss_dssp HHHHHHHHHHTC---------SEEEEEEECSSH
T ss_pred HHHHHHHHhccc---------cceEEEEEecCh
Confidence 578999999998 466666555433
No 4
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=21.06 E-value=1.8e+02 Score=31.46 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHhcCCCcccCCCcceeeeeecccCCccccccccEEEEEecC--CCCCCCCCCchhHHHHHHHhcCCCC
Q 009253 104 STIEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEI--PPDAWKDDPYGIDLAKRVNAHLPRN 181 (539)
Q Consensus 104 ~TIE~eLE~AL~kag~I~e~n~~~~~ki~~~rSsRTDKGVHA~~qVvs~kl~i--~~~~~~~dp~~~~l~~~LN~~LP~d 181 (539)
.+||+.|...+.++..- ..+.+..|||-|.-|=-+|+===|-+++ |........+...|.+.||+ .-+.
T Consensus 317 ~SVee~I~~~i~~~f~~--------~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~~~~~dl~~le~~IN~-~~~~ 387 (530)
T 2v9k_A 317 SSVEELISDHLLAVFKA--------ESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVHFTSQEIKELQQKINN-SSNK 387 (530)
T ss_dssp CCHHHHHHTTHHHHHTC--------SEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCCCCHHHHHHHHHHHHT-TCSS
T ss_pred CCHHHHHHHHHHHhcCC--------CeEEEeecCCCCCceeecCCCCcEEEEecCccccccchhHHHHHHHHHhc-cCCc
Confidence 69999998887776542 5799999999999999999832222222 22110011234568889998 3355
Q ss_pred EEEEEEeecCCCCCccCC----CCCeEEEEEccc
Q 009253 182 IKVFSILPSQRSFDPRRE----CNLRKYSYLLPA 211 (539)
Q Consensus 182 IRV~~i~rV~~sF~AR~~----c~~R~Y~YllP~ 211 (539)
|.|.++..|++.==.+.. -..|+|.=++-.
T Consensus 388 V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~ 421 (530)
T 2v9k_A 388 IQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWT 421 (530)
T ss_dssp EEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEE
T ss_pred EEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEE
Confidence 999999988743211111 124677755543
No 5
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=12.25 E-value=2.2e+02 Score=24.17 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=36.0
Q ss_pred HHHHHHHhhchH-hHHhh-hhhccCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHhhh
Q 009253 470 MVDEFYTSVTLP-EVSKF-LDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFESK 530 (539)
Q Consensus 470 ~~e~Fk~~~i~p-~I~~~-l~~~~~~~~~W~e~l~~~~~~~~~~~~~~~~~~~~wk~~~~~~~ 530 (539)
.++-.+.++||| +|-.. ++ -.|.+|.+ .++.++++-.-.+.-.+|.++--++|
T Consensus 62 L~~IM~ND~iYPP~i~~~~~~---~AW~EWR~-----~~L~~Dei~~E~~~~~~WVN~iT~sK 116 (126)
T 3fy6_A 62 LQDIMNNDSVYPPEITQNLFQ---HAWLEWRK-----GALDNDEVTRELELVAQWVNKVTEAK 116 (126)
T ss_dssp HHHHHHTTTCCCBTTHHHHHH---HHHHHHHT-----TSSCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhCCCcCChHHHHHHHH---HHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHhhcC
Confidence 456678899995 55543 33 35777753 46677777666788899999866554
No 6
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A
Probab=9.55 E-value=1.4e+02 Score=30.07 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=53.2
Q ss_pred CHHHHH-HHHhccCCCCCCCCCCCCeeEeccccCCCCCCCCCCCccccchhhHHHHHHHHHHHHhhchHhHHhhhhhccC
Q 009253 414 PRDILT-LSLAKHSRIVLPLAPSEVLFLRANSFSVRTRPGVTRPEMQTMVESEEILKMVDEFYTSVTLPEVSKFLDATKS 492 (539)
Q Consensus 414 p~~~i~-~~L~~~~ri~iP~APa~GL~L~~v~f~~~nk~~~~~~~~~~~~~~~~~~~~~e~Fk~~~i~p~I~~~l~~~~~ 492 (539)
|..++. .+|.++..-++|-.|+-|=+...- -+.. -.|.+. ..+-+++.. +.=-|. .+|.. .
T Consensus 185 P~q~iD~~aL~GDsSDNIPGVpGIG~~~~~~-~~ge-----r~~~~~-~~~~~~~~~-------~~~~~~--~~~~~--~ 246 (305)
T 3h7i_A 185 AEIDCMTKILKGDKKDNVASVKVRSDFWFTR-VEGE-----RTPSMK-TSIVEAIAN-------DREQAK--VLLTE--S 246 (305)
T ss_dssp HHHHHHHHHHHCBGGGTBCCTTSCTTHHHHC-CTTC-----CCCCCC-HHHHHHHHH-------CGGGHH--HHSCH--H
T ss_pred HHHHhhHHheeCccccCCCCCCcCCcccccc-cccc-----cCCcch-HHHHHHHhh-------ccccHH--HhcCH--H
Confidence 655554 567788888999999999542211 1111 112211 111111111 111122 33332 3
Q ss_pred cHHHHHHH--hhhcCCCChhhHHHHHHHHHHHHH
Q 009253 493 PWTEWIEN--LEKFTSIPNEQLDEVRNAWQLWKE 524 (539)
Q Consensus 493 ~~~~W~e~--l~~~~~~~~~~~~~~~~~~~~wk~ 524 (539)
.+..|.|| |--|..||++-.+.+.++|+..|-
T Consensus 247 ~~~r~~~n~~lidf~~ip~~i~~~i~~~y~~~~~ 280 (305)
T 3h7i_A 247 EYNRYKENLVLIDFDYIPDNIASNIVNYYNSYKL 280 (305)
T ss_dssp HHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhcchhcchhhChHHHHHHHHHHHhcCCC
Confidence 48889887 334889999999999999998773
No 7
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=9.43 E-value=83 Score=26.75 Aligned_cols=54 Identities=28% Similarity=0.261 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHccCCCHHHHHHHHhccC-CCCC-CCCCCCCeeEeccccCCCCCC
Q 009253 394 MLHQIRKMVGTAVAVKRKLLPRDILTLSLAKHS-RIVL-PLAPSEVLFLRANSFSVRTRP 451 (539)
Q Consensus 394 LlhQIRkMVG~avaV~rG~~p~~~i~~~L~~~~-ri~i-P~APa~GL~L~~v~f~~~nk~ 451 (539)
|.||||.|-.+--.|+++ ++.++..|..+. .+-+ -+|.++- ....+.|..||++
T Consensus 1 m~hqi~s~ktlwelv~~~---~~~l~~fl~~h~~~~~l~dias~~k-~vykp~f~~y~~~ 56 (128)
T 3da5_A 1 MSHQIRSKKTLWELVGRN---KDALRDFLKEHRGTILLRDIASEHK-VVYKPIFKRYNGD 56 (128)
T ss_dssp -------CCCHHHHTTSC---HHHHHHHHHHTTTTEEEEETTSSSC-CEEEECBCTTCSS
T ss_pred CchHHHHHHHHHHHHCCC---HHHHHHHHHHhhcceeHHhhcchhh-hHHhHHHHHhcCC
Confidence 789999998887777765 466666664432 1111 2344433 2345667777764
No 8
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=8.00 E-value=2.6e+02 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCcccCCCcceeeeeecccCCcc
Q 009253 106 IEGELETALFKAGGIRESNYGNLQKIAWARSSRTDKG 142 (539)
Q Consensus 106 IE~eLE~AL~kag~I~e~n~~~~~ki~~~rSsRTDKG 142 (539)
|-++|-+-+.|-|+ +++.++..+||-|-
T Consensus 32 vlnelmdyikkqga---------krvrisitartkke 59 (106)
T 1qys_A 32 VLNELMDYIKKQGA---------KRVRISITARTKKE 59 (106)
T ss_dssp HHHHHHHHHHHHCC---------SEEEEEEECSSHHH
T ss_pred HHHHHHHHHHhcCC---------cEEEEEEEecchhH
Confidence 45566667777787 78999999999774
No 9
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=7.58 E-value=7.4e+02 Score=19.33 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=33.4
Q ss_pred HhHHhhhhhccCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHhh
Q 009253 481 PEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRFES 529 (539)
Q Consensus 481 p~I~~~l~~~~~~~~~W~e~l~~~~~~~~~~~~~~~~~~~~wk~~~~~~ 529 (539)
..|.+++.....+=.+-+..|..+.+++.+.+-.....|..|....+..
T Consensus 46 ~~is~~e~g~~~~~~~~l~~l~~~l~v~~~~ll~~~~~~~~~~~~~~~~ 94 (104)
T 3cec_A 46 QTIQEVINGQRSITVDIAIRLGKALGNGPRLWLNLQQKVDLWYALQSHK 94 (104)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHCcCHHHHHhHHHHHHHHHHHHhhh
Confidence 4566665544344345566677777888888888888899998765543
No 10
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=7.22 E-value=7e+02 Score=20.18 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=36.0
Q ss_pred HhHHhhhhhccCcHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHH
Q 009253 481 PEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAWQLWKEKRF 527 (539)
Q Consensus 481 p~I~~~l~~~~~~~~~W~e~l~~~~~~~~~~~~~~~~~~~~wk~~~~ 527 (539)
+.|.+++..+..+=.+.+..|..+.+++.+.|=.....|..|+..-.
T Consensus 42 ~~is~ie~G~~~~s~~~~~kla~~lgvs~~~ll~~q~~ydl~~~~~~ 88 (104)
T 3trb_A 42 NRVTAILNGARSITADTALRLAKFFGTTPEFWLNLQDAYDIKMALKK 88 (104)
T ss_dssp HHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHhCCchHHHHHHHHHH
Confidence 56677666555555677888888889999999888999999987643
Done!