RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 009253
         (539 letters)



>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia
           coli [TaxId: 562]}
          Length = 264

 Score = 70.8 bits (172), Expect = 2e-14
 Identities = 37/186 (19%), Positives = 61/186 (32%), Gaps = 22/186 (11%)

Query: 77  KKKVALRVGYVGTDYRGLQMQRDEHSLSTIEGELETALFKAGGIRESNYGNLQKIAWARS 136
             K+AL + Y G+ Y G Q Q +     +++ +LE AL +            + I    +
Sbjct: 3   VYKIALGIEYDGSKYYGWQRQNEVR---SVQEKLEKALSQVAN---------EPITVFCA 50

Query: 137 SRTDKGVHSLATMICLKMEIPPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDP 196
            RTD GVH    ++  +                    VNA+LP +I V  +      F  
Sbjct: 51  GRTDAGVHGTGQVVHFETTALRKDAAWTL-------GVNANLPGDIAVRWVKTVPDDFHA 103

Query: 197 RRECNL---RKYSYLLPAEVIGINSQLTAAEIDSHISDFNAILNEFEGEHPFHNYTERSK 253
           R        R   Y        ++  +T           +       GE+ F ++     
Sbjct: 104 RFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC 163

Query: 254 YRRKPH 259
             R P 
Sbjct: 164 QSRTPW 169



 Score = 39.2 bits (90), Expect = 8e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 363 HFRKIFSCSCGKLEKSLGFGYVEISISGESFMLHQIRKMVGTAVAVKRKLLPRDILTLSL 422
              +    +   +  +    YV + I   +F+ H +R +VG+ + V     P   +   L
Sbjct: 163 CQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 222

Query: 423 AKHSRIVL-PLAPSEVLFL 440
           A   R +    A +E L+L
Sbjct: 223 AAKDRTLAAATAKAEGLYL 241


>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
           (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
          Length = 300

 Score = 29.7 bits (66), Expect = 0.97
 Identities = 16/83 (19%), Positives = 28/83 (33%)

Query: 157 PPDAWKDDPYGIDLAKRVNAHLPRNIKVFSILPSQRSFDPRRECNLRKYSYLLPAEVIGI 216
            PDA  +     +L          NI       +  +FD     NL +   LL ++ I  
Sbjct: 187 NPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILF 246

Query: 217 NSQLTAAEIDSHISDFNAILNEF 239
           +S L        +  ++   + F
Sbjct: 247 SSDLAVNTTKKLVEAYSRSQSLF 269


>d1gnya_ b.18.1.11 (A:) Xylan-binding module from xylanase 10c
           {Cellvibrio japonicus [TaxId: 155077]}
          Length = 153

 Score = 27.4 bits (60), Expect = 3.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 264 VSKRAKASKDA--VFSRVEE--SEGEEDGFSKVEESDGEEDLGIGGEISSDDEKANQNS 318
           VS   KAS+    +F++++E  S+GE D  +   E   + DL +   I  DD+K NQ +
Sbjct: 65  VSAEFKASEANLQIFAQLKEDWSKGEWDCLAGSSELTADTDLTLTCTIDEDDDKFNQTA 123


>d1o70a2 b.118.1.1 (A:468-624) Fasciclin I {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 157

 Score = 27.1 bits (59), Expect = 3.4
 Identities = 7/60 (11%), Positives = 22/60 (36%)

Query: 460 TMVESEEILKMVDEFYTSVTLPEVSKFLDATKSPWTEWIENLEKFTSIPNEQLDEVRNAW 519
           T++   E   M+ + Y        +  L+ T+  +T ++   + +     +     +  +
Sbjct: 2   TVLGKLESDPMMSDTYKMGKFSHFNDQLNNTQRRFTYFVPRDKGWQKTELDYPSAHKKLF 61


>d1h2ca_ b.31.1.1 (A:) EV matrix protein {Ebola virus [TaxId:
           205488]}
          Length = 125

 Score = 25.8 bits (56), Expect = 7.5
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 120 IRESNYGNLQKIAWARSSRTDKGVHSLATMICLKMEIPPDAWKD 163
           +R  N   LQ+               L  +  +   +P   W D
Sbjct: 82  LRIGNQAFLQEFVLPPVQLPQYFTFDLTALKLITQPLPAATWTD 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,925,803
Number of extensions: 87085
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 10
Length of query: 539
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 449
Effective length of database: 1,171,896
Effective search space: 526181304
Effective search space used: 526181304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.4 bits)