Query 009255
Match_columns 539
No_of_seqs 676 out of 3055
Neff 12.1
Searched_HMMs 46136
Date Thu Mar 28 22:19:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.7E-72 525.4 65.1 503 5-528 365-893 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 8.7E-68 1.9E-72 526.5 62.2 495 1-518 396-916 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.4E-67 3.1E-72 536.1 52.5 491 7-535 149-674 (857)
4 PLN03077 Protein ECB2; Provisi 100.0 2.8E-66 6E-71 526.7 51.0 519 2-538 78-609 (857)
5 PLN03081 pentatricopeptide (PP 100.0 3.2E-63 6.9E-68 492.4 54.8 476 6-514 83-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-61 4.6E-66 479.4 47.8 441 5-462 118-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9E-34 1.9E-38 296.8 63.0 495 9-538 362-891 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 8.5E-34 1.8E-38 297.0 62.8 467 11-509 432-898 (899)
9 PRK11447 cellulose synthase su 100.0 1.1E-26 2.3E-31 242.9 60.8 504 8-538 60-731 (1157)
10 PRK11447 cellulose synthase su 100.0 2.8E-26 6.1E-31 239.8 60.2 472 14-509 116-738 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 4.6E-27 9.9E-32 208.6 38.0 439 48-520 51-492 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 1.4E-25 3.1E-30 199.3 37.5 450 13-497 51-505 (966)
13 PRK09782 bacteriophage N4 rece 100.0 3.1E-22 6.7E-27 200.0 57.2 222 289-538 476-697 (987)
14 PRK09782 bacteriophage N4 rece 100.0 8.7E-22 1.9E-26 196.8 56.5 473 22-538 56-663 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-21 2.3E-26 193.1 52.9 427 48-511 130-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 5.1E-22 1.1E-26 185.9 45.0 492 20-538 174-736 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 7.2E-21 1.6E-25 187.2 53.8 432 12-460 129-572 (615)
18 PRK10049 pgaA outer membrane p 99.9 1.4E-20 3.1E-25 188.4 50.4 431 42-527 12-470 (765)
19 KOG2002 TPR-containing nuclear 99.9 2.6E-20 5.7E-25 174.6 46.2 482 8-514 268-801 (1018)
20 PRK14574 hmsH outer membrane p 99.9 2E-19 4.3E-24 176.4 52.9 445 51-523 40-523 (822)
21 PRK11788 tetratricopeptide rep 99.9 7.2E-22 1.6E-26 185.0 34.8 300 195-518 45-354 (389)
22 PRK10049 pgaA outer membrane p 99.9 1.1E-19 2.4E-24 182.0 51.3 409 9-460 14-457 (765)
23 PRK11788 tetratricopeptide rep 99.9 1.8E-21 4E-26 182.2 35.1 301 54-361 44-354 (389)
24 PRK15174 Vi polysaccharide exp 99.9 5.6E-20 1.2E-24 180.1 45.7 333 13-354 45-381 (656)
25 PRK15174 Vi polysaccharide exp 99.9 1.5E-19 3.3E-24 177.1 46.9 363 20-391 15-383 (656)
26 PRK14574 hmsH outer membrane p 99.9 3.4E-18 7.3E-23 167.9 54.2 434 16-460 40-514 (822)
27 KOG0495 HAT repeat protein [RN 99.9 9.3E-17 2E-21 144.6 48.8 462 21-517 387-884 (913)
28 KOG1915 Cell cycle control pro 99.9 3.4E-16 7.4E-21 135.7 44.6 450 46-525 74-548 (677)
29 KOG0495 HAT repeat protein [RN 99.9 2.5E-15 5.5E-20 135.5 49.9 487 24-531 360-865 (913)
30 KOG1915 Cell cycle control pro 99.9 2.3E-15 5E-20 130.7 46.7 468 12-510 75-584 (677)
31 KOG2076 RNA polymerase III tra 99.8 2.6E-15 5.6E-20 140.7 49.5 486 7-511 136-695 (895)
32 KOG2003 TPR repeat-containing 99.8 1.2E-17 2.6E-22 144.0 30.1 459 12-510 203-688 (840)
33 KOG2003 TPR repeat-containing 99.8 4.3E-17 9.4E-22 140.6 31.9 428 86-539 207-681 (840)
34 KOG4422 Uncharacterized conser 99.8 1.7E-15 3.7E-20 129.8 40.8 409 10-425 116-591 (625)
35 KOG1173 Anaphase-promoting com 99.8 1.9E-15 4.2E-20 134.2 38.6 487 9-530 15-535 (611)
36 KOG1155 Anaphase-promoting com 99.8 2E-14 4.3E-19 124.7 42.6 389 112-532 161-555 (559)
37 KOG2076 RNA polymerase III tra 99.8 4.1E-14 8.8E-19 132.8 46.9 341 7-351 170-552 (895)
38 KOG4422 Uncharacterized conser 99.8 1.4E-14 3E-19 124.4 37.6 358 9-390 206-591 (625)
39 KOG1155 Anaphase-promoting com 99.8 4.3E-14 9.4E-19 122.6 38.2 359 145-537 159-526 (559)
40 KOG0547 Translocase of outer m 99.8 2E-14 4.3E-19 125.5 34.9 221 264-510 335-565 (606)
41 PRK10747 putative protoheme IX 99.8 1E-14 2.3E-19 134.9 33.9 283 198-510 97-389 (398)
42 TIGR00540 hemY_coli hemY prote 99.7 1.4E-14 3E-19 135.0 33.6 290 197-510 96-398 (409)
43 PF13429 TPR_15: Tetratricopep 99.7 1.3E-17 2.9E-22 147.5 12.6 262 225-510 13-276 (280)
44 PF13429 TPR_15: Tetratricopep 99.7 1.9E-17 4.1E-22 146.5 13.0 254 260-539 13-269 (280)
45 KOG0547 Translocase of outer m 99.7 8.3E-14 1.8E-18 121.7 32.8 414 12-460 117-567 (606)
46 PRK10747 putative protoheme IX 99.7 5.5E-14 1.2E-18 130.1 33.5 222 229-459 162-390 (398)
47 TIGR00540 hemY_coli hemY prote 99.7 6.4E-14 1.4E-18 130.5 33.3 134 324-459 262-399 (409)
48 KOG1126 DNA-binding cell divis 99.7 3.4E-15 7.4E-20 135.5 23.1 273 235-537 334-610 (638)
49 KOG1126 DNA-binding cell divis 99.7 6.5E-15 1.4E-19 133.7 24.3 287 200-517 334-624 (638)
50 COG3071 HemY Uncharacterized e 99.7 4.3E-13 9.3E-18 114.7 32.2 292 198-516 97-395 (400)
51 COG2956 Predicted N-acetylgluc 99.7 2.9E-13 6.2E-18 112.2 29.7 299 13-319 39-347 (389)
52 KOG3785 Uncharacterized conser 99.7 3.2E-12 6.9E-17 107.4 35.8 417 17-460 29-491 (557)
53 KOG2047 mRNA splicing factor [ 99.7 7.1E-11 1.5E-15 107.3 46.4 437 11-459 103-615 (835)
54 KOG4318 Bicoid mRNA stability 99.7 1.2E-13 2.6E-18 129.3 29.7 484 1-528 16-641 (1088)
55 KOG3785 Uncharacterized conser 99.7 1.9E-12 4.1E-17 108.7 33.9 428 52-521 29-498 (557)
56 COG2956 Predicted N-acetylgluc 99.7 5.4E-13 1.2E-17 110.5 29.7 289 198-510 48-346 (389)
57 KOG1173 Anaphase-promoting com 99.7 2.1E-12 4.5E-17 115.3 35.4 439 5-460 44-519 (611)
58 COG3071 HemY Uncharacterized e 99.7 2.4E-12 5.2E-17 110.2 33.2 293 93-423 97-389 (400)
59 KOG1129 TPR repeat-containing 99.6 3.9E-14 8.5E-19 117.3 19.1 238 256-518 224-463 (478)
60 KOG2047 mRNA splicing factor [ 99.6 1.7E-09 3.8E-14 98.5 45.9 441 45-516 102-619 (835)
61 KOG1156 N-terminal acetyltrans 99.6 6.1E-10 1.3E-14 101.5 42.7 468 11-510 9-510 (700)
62 KOG4162 Predicted calmodulin-b 99.6 4.7E-10 1E-14 104.4 42.1 409 78-510 321-782 (799)
63 KOG1156 N-terminal acetyltrans 99.6 7.8E-10 1.7E-14 100.9 42.1 433 47-513 10-470 (700)
64 PF12569 NARP1: NMDA receptor- 99.6 2.3E-10 4.9E-15 107.0 39.9 294 16-318 10-333 (517)
65 KOG4162 Predicted calmodulin-b 99.6 1.8E-09 3.9E-14 100.6 44.4 121 397-539 652-775 (799)
66 KOG1174 Anaphase-promoting com 99.6 1.3E-09 2.9E-14 93.9 38.3 302 198-527 209-514 (564)
67 KOG1174 Anaphase-promoting com 99.5 3.1E-09 6.6E-14 91.7 38.9 289 163-460 209-501 (564)
68 PRK12370 invasion protein regu 99.5 1.2E-11 2.6E-16 119.9 27.1 148 271-421 320-467 (553)
69 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.7E-16 105.7 26.0 200 290-510 31-231 (234)
70 KOG2376 Signal recognition par 99.5 6E-09 1.3E-13 94.2 40.8 453 12-507 14-516 (652)
71 PRK12370 invasion protein regu 99.5 2.5E-11 5.5E-16 117.6 27.8 233 269-527 275-519 (553)
72 KOG1129 TPR repeat-containing 99.5 5.2E-12 1.1E-16 104.9 19.4 237 218-460 221-459 (478)
73 TIGR02521 type_IV_pilW type IV 99.5 3.1E-11 6.7E-16 104.7 25.7 201 44-248 30-231 (234)
74 KOG0548 Molecular co-chaperone 99.5 7.7E-10 1.7E-14 98.8 33.3 439 17-530 9-472 (539)
75 KOG2376 Signal recognition par 99.5 3.8E-09 8.3E-14 95.4 36.4 449 48-531 15-506 (652)
76 KOG1840 Kinesin light chain [C 99.5 1.1E-10 2.5E-15 107.6 26.6 261 257-529 201-503 (508)
77 COG3063 PilF Tfp pilus assembl 99.5 1.8E-10 3.9E-15 91.4 23.6 209 293-524 38-247 (250)
78 PRK11189 lipoprotein NlpI; Pro 99.4 2E-10 4.3E-15 101.8 26.8 242 269-532 40-285 (296)
79 PF12569 NARP1: NMDA receptor- 99.4 3.3E-09 7.1E-14 99.4 35.5 305 88-422 12-332 (517)
80 KOG4340 Uncharacterized conser 99.4 5.1E-10 1.1E-14 92.2 26.2 430 1-460 1-444 (459)
81 KOG4318 Bicoid mRNA stability 99.4 1.8E-10 3.8E-15 108.6 26.2 271 31-337 11-283 (1088)
82 COG3063 PilF Tfp pilus assembl 99.4 1.1E-09 2.4E-14 87.0 24.5 200 257-460 37-237 (250)
83 KOG1840 Kinesin light chain [C 99.4 1.1E-09 2.4E-14 101.2 26.3 240 220-459 199-479 (508)
84 PRK11189 lipoprotein NlpI; Pro 99.3 2.9E-09 6.4E-14 94.4 27.3 218 234-460 40-266 (296)
85 KOG1127 TPR repeat-containing 99.3 1.6E-08 3.6E-13 96.9 31.1 438 11-456 493-993 (1238)
86 PF13041 PPR_2: PPR repeat fam 99.3 1.8E-11 4E-16 75.3 6.3 50 8-57 1-50 (50)
87 KOG4340 Uncharacterized conser 99.3 2.7E-08 5.8E-13 82.3 26.0 428 45-521 10-451 (459)
88 KOG1125 TPR repeat-containing 99.3 5.9E-09 1.3E-13 94.2 23.9 244 262-529 292-554 (579)
89 KOG0624 dsRNA-activated protei 99.2 2.4E-07 5.2E-12 78.4 31.4 308 120-460 43-371 (504)
90 cd05804 StaR_like StaR_like; a 99.2 1.4E-07 3E-12 87.4 33.6 210 292-511 116-336 (355)
91 KOG0624 dsRNA-activated protei 99.2 1.1E-06 2.3E-11 74.6 35.5 203 195-424 165-370 (504)
92 cd05804 StaR_like StaR_like; a 99.2 2.1E-07 4.5E-12 86.3 33.7 200 11-214 7-215 (355)
93 KOG1127 TPR repeat-containing 99.2 2.5E-07 5.3E-12 89.2 33.2 474 15-509 464-994 (1238)
94 KOG0548 Molecular co-chaperone 99.2 3.2E-08 7E-13 88.7 25.7 414 53-538 10-446 (539)
95 PF13041 PPR_2: PPR repeat fam 99.2 6.1E-11 1.3E-15 72.9 6.3 47 149-195 2-48 (50)
96 KOG0985 Vesicle coat protein c 99.2 1.2E-06 2.6E-11 84.7 37.4 124 13-140 609-749 (1666)
97 KOG3617 WD40 and TPR repeat-co 99.2 1.8E-06 4E-11 81.7 37.9 208 10-245 757-992 (1416)
98 KOG3617 WD40 and TPR repeat-co 99.2 1.9E-07 4.1E-12 88.1 30.8 250 254-536 911-1189(1416)
99 PRK04841 transcriptional regul 99.1 4.9E-07 1.1E-11 95.0 36.3 341 159-512 383-761 (903)
100 KOG1125 TPR repeat-containing 99.1 2.1E-08 4.5E-13 90.7 21.3 264 228-505 293-565 (579)
101 PRK04841 transcriptional regul 99.1 7.8E-07 1.7E-11 93.5 36.8 337 124-460 383-761 (903)
102 PRK15359 type III secretion sy 99.1 5.5E-09 1.2E-13 81.3 15.6 121 380-525 13-133 (144)
103 PF04733 Coatomer_E: Coatomer 99.1 1.1E-08 2.4E-13 89.3 18.9 152 298-460 110-266 (290)
104 KOG3616 Selective LIM binding 99.1 1.6E-06 3.5E-11 81.1 32.9 169 297-509 739-909 (1636)
105 KOG0985 Vesicle coat protein c 99.1 1.5E-05 3.2E-10 77.6 39.4 334 32-422 969-1306(1666)
106 KOG1914 mRNA cleavage and poly 99.1 9.1E-06 2E-10 73.5 39.6 410 7-424 17-501 (656)
107 PF04733 Coatomer_E: Coatomer 99.1 8.6E-09 1.9E-13 89.9 16.4 227 258-518 38-270 (290)
108 KOG1070 rRNA processing protei 99.0 1.2E-07 2.6E-12 94.5 24.4 206 289-518 1457-1670(1710)
109 KOG3616 Selective LIM binding 99.0 2.6E-06 5.5E-11 79.8 31.3 267 157-460 739-1025(1636)
110 PRK10370 formate-dependent nit 99.0 6.7E-08 1.5E-12 79.6 19.4 152 333-517 24-178 (198)
111 PLN02789 farnesyltranstransfer 99.0 1.2E-06 2.6E-11 77.7 27.9 233 264-521 46-310 (320)
112 PLN02789 farnesyltranstransfer 99.0 6.1E-07 1.3E-11 79.5 24.4 209 298-530 45-267 (320)
113 TIGR03302 OM_YfiO outer membra 99.0 1.7E-07 3.7E-12 80.9 20.4 186 289-510 32-231 (235)
114 COG5010 TadD Flp pilus assembl 98.9 3E-07 6.6E-12 75.2 18.5 184 324-532 66-249 (257)
115 PRK15179 Vi polysaccharide bio 98.9 8.8E-07 1.9E-11 86.7 25.0 148 357-526 83-231 (694)
116 COG5010 TadD Flp pilus assembl 98.9 9.8E-07 2.1E-11 72.3 20.7 164 289-457 66-229 (257)
117 KOG1128 Uncharacterized conser 98.9 1.9E-06 4.1E-11 80.6 24.7 217 116-353 399-615 (777)
118 PRK15359 type III secretion sy 98.9 1.7E-07 3.7E-12 73.0 15.4 109 346-460 14-122 (144)
119 KOG1070 rRNA processing protei 98.9 2.5E-06 5.4E-11 85.5 26.6 205 114-323 1457-1667(1710)
120 KOG1128 Uncharacterized conser 98.9 4.4E-07 9.5E-12 84.7 19.9 217 255-510 398-615 (777)
121 TIGR02552 LcrH_SycD type III s 98.9 1.4E-07 3E-12 73.4 14.1 122 382-525 5-126 (135)
122 KOG3081 Vesicle coat complex C 98.8 6.8E-06 1.5E-10 67.4 23.5 265 1-284 1-271 (299)
123 TIGR03302 OM_YfiO outer membra 98.8 9.4E-07 2E-11 76.3 20.5 185 9-214 32-232 (235)
124 PRK10370 formate-dependent nit 98.8 1.5E-06 3.2E-11 71.7 20.1 120 338-460 52-174 (198)
125 KOG1914 mRNA cleavage and poly 98.8 0.0001 2.2E-09 67.0 43.1 410 42-460 17-502 (656)
126 PRK14720 transcript cleavage f 98.7 1.1E-05 2.4E-10 80.1 25.7 238 149-441 30-268 (906)
127 KOG3060 Uncharacterized conser 98.7 2.3E-05 5E-10 63.9 22.8 190 267-460 24-221 (289)
128 COG4783 Putative Zn-dependent 98.7 9.2E-06 2E-10 72.8 22.4 152 332-523 313-465 (484)
129 PRK14720 transcript cleavage f 98.7 1.1E-05 2.5E-10 80.0 25.4 151 116-301 117-268 (906)
130 KOG3081 Vesicle coat complex C 98.7 2.2E-05 4.8E-10 64.5 22.5 153 297-460 115-272 (299)
131 PF12854 PPR_1: PPR repeat 98.7 2E-08 4.3E-13 55.1 3.6 34 4-37 1-34 (34)
132 KOG3060 Uncharacterized conser 98.7 2.3E-05 4.9E-10 64.0 21.6 189 232-424 24-220 (289)
133 KOG0553 TPR repeat-containing 98.7 4.7E-07 1E-11 75.7 11.8 103 404-529 90-194 (304)
134 PRK15179 Vi polysaccharide bio 98.6 2E-05 4.4E-10 77.4 24.9 134 324-460 85-218 (694)
135 PF09976 TPR_21: Tetratricopep 98.6 2.3E-06 4.9E-11 67.1 14.4 126 362-508 14-144 (145)
136 TIGR02552 LcrH_SycD type III s 98.6 2.7E-06 5.8E-11 66.1 14.7 111 347-460 5-115 (135)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2E-06 4.4E-11 77.7 15.6 126 361-510 170-296 (395)
138 KOG2053 Mitochondrial inherita 98.6 0.00073 1.6E-08 65.6 44.7 95 364-460 440-537 (932)
139 KOG2053 Mitochondrial inherita 98.6 0.00073 1.6E-08 65.6 48.6 455 21-510 20-535 (932)
140 PF12854 PPR_1: PPR repeat 98.6 1.1E-07 2.4E-12 52.2 3.9 32 145-176 2-33 (34)
141 COG4783 Putative Zn-dependent 98.5 6.6E-05 1.4E-09 67.5 21.5 127 363-510 309-436 (484)
142 PLN03088 SGT1, suppressor of 98.5 4.2E-06 9.1E-11 76.2 14.4 105 402-527 9-113 (356)
143 PF09976 TPR_21: Tetratricopep 98.5 1.1E-05 2.5E-10 63.1 14.6 127 327-456 14-144 (145)
144 PRK15363 pathogenicity island 98.5 4E-05 8.7E-10 58.6 16.6 107 397-522 37-144 (157)
145 TIGR02795 tol_pal_ybgF tol-pal 98.4 1.6E-05 3.5E-10 60.1 13.0 103 397-519 4-111 (119)
146 PRK15363 pathogenicity island 98.3 4E-05 8.7E-10 58.6 13.8 100 359-460 34-133 (157)
147 PF13432 TPR_16: Tetratricopep 98.3 3E-06 6.4E-11 55.7 6.9 63 435-518 2-65 (65)
148 cd00189 TPR Tetratricopeptide 98.3 1.3E-05 2.7E-10 58.0 11.0 94 398-510 3-96 (100)
149 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.8E-11 61.0 5.0 81 408-507 2-83 (84)
150 PF12688 TPR_5: Tetratrico pep 98.3 5.9E-05 1.3E-09 55.7 13.5 105 398-525 4-114 (120)
151 COG4700 Uncharacterized protei 98.3 0.00046 9.9E-09 53.7 18.5 133 357-510 86-221 (251)
152 PRK10153 DNA-binding transcrip 98.2 9.3E-05 2E-09 70.6 17.5 143 357-521 334-490 (517)
153 COG4700 Uncharacterized protei 98.2 0.00034 7.3E-09 54.4 16.9 127 392-537 86-212 (251)
154 PF14559 TPR_19: Tetratricopep 98.2 5.3E-06 1.2E-10 55.2 6.7 66 441-526 2-67 (68)
155 COG3898 Uncharacterized membra 98.2 0.003 6.6E-08 55.4 29.3 222 267-516 166-397 (531)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.5E-05 1.2E-09 68.7 15.0 128 45-178 169-296 (395)
157 COG4235 Cytochrome c biogenesi 98.2 7.9E-05 1.7E-09 63.1 14.9 121 383-525 145-268 (287)
158 PRK02603 photosystem I assembl 98.2 7E-05 1.5E-09 60.7 14.5 101 397-517 37-153 (172)
159 KOG0550 Molecular chaperone (D 98.2 0.00036 7.9E-09 61.4 18.6 158 333-512 177-351 (486)
160 KOG0553 TPR repeat-containing 98.2 2.6E-05 5.7E-10 65.5 11.3 96 335-434 91-186 (304)
161 PF13414 TPR_11: TPR repeat; P 98.2 1.1E-05 2.3E-10 53.9 7.3 63 429-510 2-66 (69)
162 KOG0550 Molecular chaperone (D 98.2 8.2E-05 1.8E-09 65.3 13.9 162 358-538 166-341 (486)
163 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.0001 2.2E-09 55.7 13.3 100 361-460 3-106 (119)
164 PF12895 Apc3: Anaphase-promot 98.1 5.7E-06 1.2E-10 57.7 5.2 81 373-456 2-84 (84)
165 cd00189 TPR Tetratricopeptide 98.1 6.7E-05 1.5E-09 54.0 10.9 96 363-460 3-98 (100)
166 PLN03088 SGT1, suppressor of 98.1 0.00013 2.7E-09 66.7 14.5 91 368-460 10-100 (356)
167 PF13812 PPR_3: Pentatricopept 98.1 8.5E-06 1.9E-10 45.2 4.2 33 11-43 2-34 (34)
168 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.2E-10 45.3 4.5 33 12-44 2-34 (35)
169 PRK02603 photosystem I assembl 98.0 0.00034 7.3E-09 56.8 15.0 97 363-460 38-150 (172)
170 KOG2041 WD40 repeat protein [G 98.0 0.013 2.8E-07 55.7 26.8 236 42-318 689-951 (1189)
171 PRK10803 tol-pal system protei 98.0 0.00016 3.6E-09 62.2 13.3 104 397-520 145-253 (263)
172 PRK10866 outer membrane biogen 98.0 0.0024 5.3E-08 54.6 20.3 183 44-246 31-238 (243)
173 PF05843 Suf: Suppressor of fo 98.0 0.00016 3.4E-09 63.6 13.4 131 327-460 3-137 (280)
174 PF13371 TPR_9: Tetratricopept 98.0 4.5E-05 9.7E-10 51.5 7.9 69 437-525 2-70 (73)
175 PF12688 TPR_5: Tetratrico pep 98.0 7.4E-05 1.6E-09 55.2 9.1 88 433-538 4-95 (120)
176 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.012 2.6E-07 52.9 37.2 144 361-527 398-545 (660)
177 PF05843 Suf: Suppressor of fo 98.0 0.00023 5.1E-09 62.6 13.3 131 291-424 2-136 (280)
178 PRK10866 outer membrane biogen 98.0 0.0036 7.8E-08 53.6 20.1 178 260-457 37-239 (243)
179 KOG1130 Predicted G-alpha GTPa 97.9 4.6E-05 1E-09 66.7 8.5 138 361-510 196-343 (639)
180 PRK10153 DNA-binding transcrip 97.9 0.00087 1.9E-08 64.1 17.7 138 320-460 332-483 (517)
181 TIGR00756 PPR pentatricopeptid 97.9 2.2E-05 4.8E-10 43.8 4.4 31 83-113 3-33 (35)
182 PF10037 MRP-S27: Mitochondria 97.9 0.00025 5.5E-09 64.8 13.2 122 112-233 63-186 (429)
183 PF10037 MRP-S27: Mitochondria 97.9 0.00036 7.9E-09 63.8 13.9 121 78-198 64-186 (429)
184 CHL00033 ycf3 photosystem I as 97.9 0.00033 7.1E-09 56.6 12.5 95 395-507 35-138 (168)
185 PF14938 SNAP: Soluble NSF att 97.9 0.00056 1.2E-08 60.5 14.8 155 340-509 89-264 (282)
186 PF13812 PPR_3: Pentatricopept 97.9 3.3E-05 7.2E-10 42.7 4.3 29 83-111 4-32 (34)
187 PF13432 TPR_16: Tetratricopep 97.8 9.9E-05 2.2E-09 48.4 7.0 59 401-460 3-61 (65)
188 PRK15331 chaperone protein Sic 97.8 0.0019 4.1E-08 49.9 14.6 105 402-528 44-148 (165)
189 PF14938 SNAP: Soluble NSF att 97.8 0.0038 8.3E-08 55.2 19.0 92 298-389 122-225 (282)
190 COG4235 Cytochrome c biogenesi 97.8 0.0017 3.8E-08 55.2 15.6 102 357-460 153-257 (287)
191 PF13414 TPR_11: TPR repeat; P 97.8 8.1E-05 1.8E-09 49.5 6.4 66 394-460 2-68 (69)
192 CHL00033 ycf3 photosystem I as 97.8 0.00052 1.1E-08 55.4 12.3 100 26-126 15-117 (168)
193 KOG1130 Predicted G-alpha GTPa 97.7 0.00088 1.9E-08 59.0 12.6 131 328-458 198-343 (639)
194 PF08579 RPM2: Mitochondrial r 97.7 0.0007 1.5E-08 48.0 9.5 72 89-160 34-114 (120)
195 PF01535 PPR: PPR repeat; Int 97.7 7E-05 1.5E-09 40.3 3.6 29 12-40 2-30 (31)
196 PF13525 YfiO: Outer membrane 97.7 0.011 2.4E-07 49.3 18.3 169 14-203 9-196 (203)
197 KOG2041 WD40 repeat protein [G 97.7 0.06 1.3E-06 51.4 24.6 372 7-422 689-1084(1189)
198 KOG1538 Uncharacterized conser 97.7 0.0057 1.2E-07 57.4 17.3 89 359-458 746-845 (1081)
199 PF14559 TPR_19: Tetratricopep 97.6 0.00017 3.6E-09 47.8 5.8 53 407-460 3-55 (68)
200 PRK10803 tol-pal system protei 97.6 0.0014 3.1E-08 56.5 12.8 99 362-460 145-247 (263)
201 KOG0543 FKBP-type peptidyl-pro 97.6 0.00081 1.8E-08 59.5 11.1 82 431-532 258-339 (397)
202 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3E-08 46.5 9.9 77 51-127 31-116 (120)
203 PF13281 DUF4071: Domain of un 97.6 0.032 6.9E-07 50.3 20.8 40 484-525 307-346 (374)
204 KOG2796 Uncharacterized conser 97.6 0.03 6.5E-07 46.7 18.7 133 327-460 179-316 (366)
205 PF13525 YfiO: Outer membrane 97.6 0.014 2.9E-07 48.8 17.7 171 261-451 11-199 (203)
206 COG3898 Uncharacterized membra 97.6 0.049 1.1E-06 48.2 30.3 281 163-460 97-393 (531)
207 PF07079 DUF1347: Protein of u 97.6 0.056 1.2E-06 48.9 45.0 450 19-521 15-529 (549)
208 PF13424 TPR_12: Tetratricopep 97.5 0.00031 6.6E-09 48.1 6.1 69 430-510 5-74 (78)
209 PF13512 TPR_18: Tetratricopep 97.5 0.005 1.1E-07 46.5 12.5 100 401-518 16-133 (142)
210 PRK15331 chaperone protein Sic 97.5 0.01 2.2E-07 46.0 14.1 91 367-459 44-134 (165)
211 PF01535 PPR: PPR repeat; Int 97.5 0.00021 4.5E-09 38.4 3.6 28 152-179 2-29 (31)
212 COG1729 Uncharacterized protei 97.4 0.0056 1.2E-07 51.6 13.2 106 397-521 144-252 (262)
213 KOG2796 Uncharacterized conser 97.4 0.057 1.2E-06 45.1 24.4 140 292-434 179-323 (366)
214 PF03704 BTAD: Bacterial trans 97.4 0.021 4.6E-07 44.8 15.6 72 432-521 64-140 (146)
215 KOG1258 mRNA processing protei 97.4 0.13 2.9E-06 48.5 34.4 184 255-444 297-489 (577)
216 PF06239 ECSIT: Evolutionarily 97.4 0.0061 1.3E-07 49.4 12.0 115 43-176 45-165 (228)
217 KOG4555 TPR repeat-containing 97.4 0.012 2.6E-07 43.0 12.2 55 405-460 53-107 (175)
218 PF06239 ECSIT: Evolutionarily 97.3 0.0059 1.3E-07 49.4 11.7 87 114-200 46-153 (228)
219 PRK11906 transcriptional regul 97.3 0.015 3.3E-07 53.2 15.7 147 340-509 273-434 (458)
220 PF13371 TPR_9: Tetratricopept 97.3 0.0022 4.7E-08 43.1 7.9 57 403-460 3-59 (73)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0018 4E-08 58.8 8.9 64 394-459 74-141 (453)
222 PF13424 TPR_12: Tetratricopep 97.2 0.0011 2.3E-08 45.4 5.2 64 396-459 6-75 (78)
223 KOG0543 FKBP-type peptidyl-pro 97.1 0.0087 1.9E-07 53.2 11.7 96 395-510 257-354 (397)
224 KOG4555 TPR repeat-containing 97.1 0.0064 1.4E-07 44.4 8.7 83 437-537 50-134 (175)
225 PF13428 TPR_14: Tetratricopep 97.1 0.0013 2.8E-08 38.8 4.4 41 483-525 2-42 (44)
226 KOG1258 mRNA processing protei 97.1 0.28 6.1E-06 46.4 34.5 186 324-530 296-488 (577)
227 PF13281 DUF4071: Domain of un 97.1 0.21 4.6E-06 45.2 19.8 170 43-214 139-334 (374)
228 PF04840 Vps16_C: Vps16, C-ter 97.0 0.25 5.4E-06 44.3 27.3 83 363-455 180-262 (319)
229 COG1729 Uncharacterized protei 96.9 0.02 4.4E-07 48.3 11.6 98 362-460 144-245 (262)
230 COG3118 Thioredoxin domain-con 96.9 0.092 2E-06 45.0 15.3 50 336-386 145-194 (304)
231 KOG1941 Acetylcholine receptor 96.9 0.029 6.4E-07 49.0 12.5 169 328-509 86-273 (518)
232 KOG2280 Vacuolar assembly/sort 96.9 0.48 1E-05 46.1 26.6 112 290-420 684-795 (829)
233 PF10300 DUF3808: Protein of u 96.9 0.12 2.6E-06 49.4 17.8 162 328-510 191-375 (468)
234 PF03704 BTAD: Bacterial trans 96.8 0.014 3E-07 45.8 9.5 71 362-433 64-139 (146)
235 KOG2114 Vacuolar assembly/sort 96.8 0.66 1.4E-05 45.9 23.9 180 10-211 334-516 (933)
236 PRK11906 transcriptional regul 96.7 0.12 2.7E-06 47.5 15.8 163 291-458 252-435 (458)
237 PF04184 ST7: ST7 protein; In 96.7 0.28 6E-06 45.5 17.6 181 267-462 180-378 (539)
238 COG2976 Uncharacterized protei 96.7 0.14 3.1E-06 40.8 13.8 94 400-512 94-189 (207)
239 COG4105 ComL DNA uptake lipopr 96.7 0.31 6.7E-06 41.1 19.7 53 22-74 46-100 (254)
240 COG3118 Thioredoxin domain-con 96.7 0.35 7.6E-06 41.6 17.4 125 297-424 141-265 (304)
241 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.026 5.7E-07 51.6 11.0 66 357-424 72-141 (453)
242 KOG2610 Uncharacterized conser 96.6 0.088 1.9E-06 45.7 13.2 165 337-518 115-283 (491)
243 KOG1538 Uncharacterized conser 96.6 0.23 5.1E-06 47.2 16.9 52 221-281 748-799 (1081)
244 PF10300 DUF3808: Protein of u 96.6 0.094 2E-06 50.1 14.7 167 345-534 177-356 (468)
245 PF13428 TPR_14: Tetratricopep 96.5 0.0078 1.7E-07 35.4 4.7 30 431-460 2-31 (44)
246 PF12921 ATP13: Mitochondrial 96.5 0.11 2.5E-06 38.9 11.9 98 429-528 1-99 (126)
247 PF13512 TPR_18: Tetratricopep 96.5 0.06 1.3E-06 40.8 10.3 80 430-527 10-92 (142)
248 KOG1585 Protein required for f 96.4 0.44 9.6E-06 39.6 15.1 205 223-454 34-251 (308)
249 COG0457 NrfG FOG: TPR repeat [ 96.4 0.56 1.2E-05 40.4 28.9 200 290-510 59-264 (291)
250 PF13431 TPR_17: Tetratricopep 96.4 0.0035 7.7E-08 34.2 2.4 24 480-503 10-34 (34)
251 COG4105 ComL DNA uptake lipopr 96.4 0.52 1.1E-05 39.8 20.3 59 400-459 172-233 (254)
252 PF12921 ATP13: Mitochondrial 96.3 0.089 1.9E-06 39.5 10.4 29 9-37 1-29 (126)
253 PF04840 Vps16_C: Vps16, C-ter 96.3 0.81 1.8E-05 41.1 25.1 104 260-383 182-285 (319)
254 PF13176 TPR_7: Tetratricopept 96.2 0.005 1.1E-07 34.3 2.4 27 484-510 1-27 (36)
255 PF00515 TPR_1: Tetratricopept 96.2 0.012 2.6E-07 32.2 3.9 32 483-516 2-33 (34)
256 PF04053 Coatomer_WDAD: Coatom 96.2 0.15 3.3E-06 47.9 13.3 155 20-210 271-427 (443)
257 KOG1920 IkappaB kinase complex 96.1 2 4.4E-05 44.5 22.5 245 168-458 775-1027(1265)
258 KOG4234 TPR repeat-containing 96.1 0.17 3.6E-06 40.5 11.2 96 405-522 105-206 (271)
259 PF04184 ST7: ST7 protein; In 96.1 0.31 6.7E-06 45.2 14.3 59 399-457 263-322 (539)
260 KOG2280 Vacuolar assembly/sort 96.0 1.7 3.8E-05 42.5 34.6 344 109-506 426-794 (829)
261 PF07079 DUF1347: Protein of u 95.9 1.4 3E-05 40.5 42.5 417 12-456 48-521 (549)
262 KOG1941 Acetylcholine receptor 95.8 0.19 4.1E-06 44.2 11.2 169 361-537 84-265 (518)
263 PF07719 TPR_2: Tetratricopept 95.8 0.02 4.3E-07 31.2 3.8 32 483-516 2-33 (34)
264 KOG4648 Uncharacterized conser 95.8 0.054 1.2E-06 47.0 7.8 95 404-520 106-201 (536)
265 KOG2610 Uncharacterized conser 95.8 0.37 7.9E-06 42.1 12.6 157 53-212 111-274 (491)
266 smart00299 CLH Clathrin heavy 95.7 0.69 1.5E-05 35.9 16.2 86 13-106 10-95 (140)
267 KOG2396 HAT (Half-A-TPR) repea 95.7 1.8 3.8E-05 40.4 39.2 105 392-516 456-563 (568)
268 smart00299 CLH Clathrin heavy 95.7 0.72 1.6E-05 35.7 15.6 85 49-141 11-95 (140)
269 KOG1585 Protein required for f 95.7 1.1 2.3E-05 37.5 16.0 22 189-210 194-215 (308)
270 COG0457 NrfG FOG: TPR repeat [ 95.6 1.3 2.7E-05 38.1 30.6 202 256-460 60-266 (291)
271 COG4649 Uncharacterized protei 95.6 0.83 1.8E-05 35.8 13.9 121 56-178 69-195 (221)
272 PF06552 TOM20_plant: Plant sp 95.5 0.16 3.4E-06 40.1 8.7 93 413-527 9-123 (186)
273 COG3629 DnrI DNA-binding trans 95.3 0.27 5.9E-06 42.5 10.6 79 431-527 154-237 (280)
274 PF08631 SPO22: Meiosis protei 95.3 1.9 4.1E-05 38.2 24.8 102 117-220 86-192 (278)
275 PF04053 Coatomer_WDAD: Coatom 95.3 0.62 1.3E-05 44.0 13.8 27 324-350 346-372 (443)
276 PF10345 Cohesin_load: Cohesin 95.3 3.7 8E-05 41.3 35.4 182 64-246 40-251 (608)
277 KOG1920 IkappaB kinase complex 95.2 4.8 0.0001 42.0 21.5 143 257-421 910-1052(1265)
278 COG4649 Uncharacterized protei 95.1 1.3 2.8E-05 34.8 15.3 134 326-460 60-197 (221)
279 PF13170 DUF4003: Protein of u 95.0 1.9 4.2E-05 38.3 15.2 24 168-191 200-223 (297)
280 KOG2114 Vacuolar assembly/sort 95.0 4.4 9.5E-05 40.5 26.4 178 48-246 337-516 (933)
281 KOG3941 Intermediate in Toll s 95.0 0.29 6.2E-06 41.6 9.3 116 78-212 65-186 (406)
282 COG2976 Uncharacterized protei 94.9 1.4 3.1E-05 35.4 12.5 93 366-460 95-189 (207)
283 COG3629 DnrI DNA-binding trans 94.7 0.4 8.7E-06 41.5 9.9 79 360-439 153-236 (280)
284 PF13181 TPR_8: Tetratricopept 94.7 0.048 1E-06 29.7 3.1 31 484-516 3-33 (34)
285 PF06552 TOM20_plant: Plant sp 94.6 0.56 1.2E-05 37.2 9.5 110 377-514 8-139 (186)
286 PF07035 Mic1: Colon cancer-as 94.6 1.8 4E-05 34.3 14.4 33 171-203 15-47 (167)
287 PF13176 TPR_7: Tetratricopept 94.6 0.096 2.1E-06 29.0 4.1 27 432-458 1-27 (36)
288 COG4785 NlpI Lipoprotein NlpI, 94.4 2.3 5E-05 34.9 14.7 29 221-249 238-266 (297)
289 PF09205 DUF1955: Domain of un 94.4 1.5 3.3E-05 32.7 14.4 138 337-513 14-151 (161)
290 PF09205 DUF1955: Domain of un 94.3 1.6 3.5E-05 32.5 13.9 58 367-425 93-150 (161)
291 COG2909 MalT ATP-dependent tra 94.3 6.7 0.00015 39.7 26.6 230 229-458 424-687 (894)
292 PF08631 SPO22: Meiosis protei 94.3 3.6 7.8E-05 36.4 26.0 166 326-509 85-273 (278)
293 TIGR03504 FimV_Cterm FimV C-te 94.2 0.092 2E-06 30.5 3.4 39 486-524 3-41 (44)
294 PF07719 TPR_2: Tetratricopept 94.1 0.17 3.7E-06 27.4 4.5 30 431-460 2-31 (34)
295 PF10602 RPN7: 26S proteasome 94.1 0.75 1.6E-05 37.2 9.9 99 397-509 38-140 (177)
296 PF00515 TPR_1: Tetratricopept 94.1 0.18 3.9E-06 27.3 4.5 30 431-460 2-31 (34)
297 PF10602 RPN7: 26S proteasome 94.0 1.1 2.3E-05 36.3 10.5 96 47-142 38-140 (177)
298 PF02259 FAT: FAT domain; Int 93.9 5.4 0.00012 36.9 24.6 65 324-388 145-212 (352)
299 COG4785 NlpI Lipoprotein NlpI, 93.8 3.2 6.9E-05 34.1 17.2 182 267-460 77-267 (297)
300 KOG1464 COP9 signalosome, subu 93.7 3.9 8.4E-05 34.8 17.7 58 365-422 150-218 (440)
301 COG1747 Uncharacterized N-term 93.7 6.2 0.00013 37.1 24.7 95 254-353 65-159 (711)
302 PRK15180 Vi polysaccharide bio 93.7 0.46 1E-05 43.6 8.5 123 335-460 299-421 (831)
303 KOG3941 Intermediate in Toll s 93.6 0.74 1.6E-05 39.2 9.0 36 96-131 139-174 (406)
304 KOG4234 TPR repeat-containing 93.4 2.1 4.6E-05 34.6 10.6 88 370-460 105-198 (271)
305 PF13174 TPR_6: Tetratricopept 93.3 0.12 2.6E-06 27.7 2.9 31 484-516 2-32 (33)
306 PF13431 TPR_17: Tetratricopep 93.3 0.094 2E-06 28.6 2.4 33 505-539 2-34 (34)
307 TIGR02561 HrpB1_HrpK type III 93.3 1.4 3E-05 33.8 9.1 73 439-532 19-92 (153)
308 KOG3364 Membrane protein invol 93.2 2.6 5.6E-05 31.6 10.1 79 427-525 29-112 (149)
309 PF13374 TPR_10: Tetratricopep 93.1 0.2 4.3E-06 28.8 3.9 28 483-510 3-30 (42)
310 KOG2396 HAT (Half-A-TPR) repea 92.9 8.4 0.00018 36.2 39.1 224 273-528 300-541 (568)
311 PF02259 FAT: FAT domain; Int 92.8 7.9 0.00017 35.8 23.6 66 289-354 145-213 (352)
312 COG5107 RNA14 Pre-mRNA 3'-end 92.7 8.2 0.00018 35.7 36.6 96 395-510 397-494 (660)
313 PF13929 mRNA_stabil: mRNA sta 92.7 6.3 0.00014 34.3 14.8 137 59-195 142-288 (292)
314 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.56 1.2E-05 28.7 5.3 41 485-527 4-44 (53)
315 PF13174 TPR_6: Tetratricopept 92.6 0.25 5.3E-06 26.5 3.5 29 432-460 2-30 (33)
316 PF09613 HrpB1_HrpK: Bacterial 92.5 4.2 9.2E-05 31.8 13.4 50 57-108 22-72 (160)
317 PF09613 HrpB1_HrpK: Bacterial 92.4 4.3 9.3E-05 31.8 13.0 77 361-441 8-88 (160)
318 PF02284 COX5A: Cytochrome c o 92.1 3.2 6.8E-05 29.4 8.9 77 11-88 9-87 (108)
319 TIGR02561 HrpB1_HrpK type III 92.1 4.5 9.7E-05 31.1 12.5 51 57-109 22-73 (153)
320 KOG1586 Protein required for f 91.9 6.7 0.00015 32.8 14.7 132 373-518 86-229 (288)
321 PF11207 DUF2989: Protein of u 91.9 3.4 7.4E-05 33.7 10.3 75 412-501 123-197 (203)
322 PF07721 TPR_4: Tetratricopept 91.8 0.27 5.9E-06 24.7 2.8 24 484-507 3-26 (26)
323 COG0790 FOG: TPR repeat, SEL1 91.8 9.3 0.0002 34.2 22.6 155 340-521 92-276 (292)
324 KOG1308 Hsp70-interacting prot 91.7 0.14 3.1E-06 44.7 2.6 85 373-460 127-212 (377)
325 PF09986 DUF2225: Uncharacteri 91.6 3 6.6E-05 35.0 10.3 104 406-522 88-205 (214)
326 PF07035 Mic1: Colon cancer-as 91.6 5.8 0.00012 31.5 15.6 133 31-177 15-147 (167)
327 PF13170 DUF4003: Protein of u 91.6 9.6 0.00021 34.0 20.8 21 169-189 81-101 (297)
328 COG3947 Response regulator con 91.4 8.9 0.00019 33.3 15.0 60 433-510 282-341 (361)
329 PF04097 Nic96: Nup93/Nic96; 91.2 18 0.00039 36.4 24.2 16 195-210 268-283 (613)
330 KOG4642 Chaperone-dependent E3 90.9 2.5 5.4E-05 35.3 8.6 122 370-508 20-143 (284)
331 PF11207 DUF2989: Protein of u 90.8 3.9 8.5E-05 33.4 9.6 77 372-450 119-198 (203)
332 KOG0376 Serine-threonine phosp 90.7 0.73 1.6E-05 42.6 6.2 103 403-528 12-116 (476)
333 KOG1586 Protein required for f 90.6 9.3 0.0002 32.0 15.0 95 366-460 119-225 (288)
334 KOG2471 TPR repeat-containing 90.5 15 0.00033 34.5 15.5 123 403-528 248-380 (696)
335 PF10345 Cohesin_load: Cohesin 90.5 21 0.00046 36.0 42.4 184 28-212 39-252 (608)
336 PF13374 TPR_10: Tetratricopep 90.5 0.77 1.7E-05 26.2 4.4 30 431-460 3-32 (42)
337 PF07575 Nucleopor_Nup85: Nup8 90.4 14 0.0003 36.8 15.4 25 45-70 149-173 (566)
338 KOG2066 Vacuolar assembly/sort 90.3 21 0.00046 35.8 27.5 102 17-127 363-467 (846)
339 KOG2471 TPR repeat-containing 90.0 17 0.00037 34.2 15.8 109 369-495 249-382 (696)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 3.1 6.6E-05 29.1 7.1 45 414-458 26-70 (103)
341 KOG4570 Uncharacterized conser 89.7 2.7 5.9E-05 36.6 8.3 105 38-144 57-164 (418)
342 PF02284 COX5A: Cytochrome c o 89.6 3.8 8.2E-05 29.0 7.5 45 345-389 30-74 (108)
343 KOG4648 Uncharacterized conser 89.4 2.7 5.9E-05 37.1 8.2 56 332-388 104-159 (536)
344 KOG1550 Extracellular protein 89.4 24 0.00052 35.0 28.6 79 96-180 228-323 (552)
345 PF13181 TPR_8: Tetratricopept 89.3 0.92 2E-05 24.4 3.8 29 432-460 3-31 (34)
346 KOG1550 Extracellular protein 89.2 25 0.00054 35.0 27.8 178 26-215 228-427 (552)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 4.3 9.3E-05 28.4 7.4 40 348-387 30-69 (103)
348 PF00637 Clathrin: Region in C 89.1 0.41 8.8E-06 37.3 3.0 84 366-456 13-96 (143)
349 COG4455 ImpE Protein of avirul 88.9 4.9 0.00011 33.1 8.8 65 434-518 5-69 (273)
350 PRK10941 hypothetical protein; 88.8 5.9 0.00013 34.6 10.0 70 434-523 185-254 (269)
351 COG4455 ImpE Protein of avirul 88.7 3.9 8.4E-05 33.7 8.1 77 12-89 3-81 (273)
352 PF10579 Rapsyn_N: Rapsyn N-te 88.4 1.1 2.5E-05 29.8 4.1 52 440-507 16-68 (80)
353 PF04097 Nic96: Nup93/Nic96; 88.2 31 0.00068 34.8 16.3 154 297-458 265-442 (613)
354 KOG0545 Aryl-hydrocarbon recep 88.0 12 0.00027 31.5 10.6 66 432-518 232-298 (329)
355 KOG4570 Uncharacterized conser 87.8 9.2 0.0002 33.6 10.2 100 323-424 62-164 (418)
356 smart00028 TPR Tetratricopepti 87.8 1.1 2.3E-05 23.3 3.5 27 484-510 3-29 (34)
357 COG1747 Uncharacterized N-term 87.6 26 0.00057 33.3 24.5 164 219-389 65-234 (711)
358 KOG0128 RNA-binding protein SA 87.3 36 0.00078 34.6 35.3 107 412-536 443-552 (881)
359 KOG4642 Chaperone-dependent E3 87.3 2 4.3E-05 35.9 5.8 80 438-538 18-98 (284)
360 KOG4507 Uncharacterized conser 87.2 3.1 6.7E-05 39.7 7.7 93 406-520 618-712 (886)
361 KOG0128 RNA-binding protein SA 87.0 38 0.00082 34.4 34.5 200 9-214 112-341 (881)
362 PF13929 mRNA_stabil: mRNA sta 86.9 20 0.00044 31.3 15.5 115 201-315 144-263 (292)
363 PF09986 DUF2225: Uncharacteri 86.1 19 0.00042 30.3 11.3 66 397-462 120-197 (214)
364 PF08424 NRDE-2: NRDE-2, neces 85.9 27 0.00059 31.7 17.2 119 342-462 48-186 (321)
365 PF00637 Clathrin: Region in C 85.8 0.42 9.1E-06 37.2 1.4 83 16-105 13-95 (143)
366 KOG0276 Vesicle coat complex C 85.0 36 0.00078 33.2 13.3 75 371-460 648-722 (794)
367 COG3947 Response regulator con 84.4 5 0.00011 34.7 7.0 60 47-107 281-340 (361)
368 TIGR03504 FimV_Cterm FimV C-te 84.2 2.8 6.1E-05 24.4 3.9 24 16-39 5-28 (44)
369 KOG0276 Vesicle coat complex C 84.1 21 0.00046 34.6 11.4 150 57-246 598-747 (794)
370 COG2909 MalT ATP-dependent tra 84.1 55 0.0012 33.7 30.3 223 160-385 425-684 (894)
371 KOG1464 COP9 signalosome, subu 83.5 28 0.0006 29.9 18.1 91 259-350 149-256 (440)
372 PF12862 Apc5: Anaphase-promot 83.0 13 0.00027 26.3 7.8 75 440-528 8-88 (94)
373 PF14561 TPR_20: Tetratricopep 82.9 7.8 0.00017 27.1 6.5 49 480-528 20-68 (90)
374 PF07163 Pex26: Pex26 protein; 82.8 20 0.00044 31.0 9.8 87 297-383 90-181 (309)
375 KOG0686 COP9 signalosome, subu 82.3 35 0.00075 31.5 11.5 92 362-455 152-254 (466)
376 PRK09687 putative lyase; Provi 82.1 36 0.00078 30.2 27.8 201 289-527 67-277 (280)
377 PF13762 MNE1: Mitochondrial s 81.7 20 0.00044 27.7 8.7 97 33-129 25-129 (145)
378 KOG4507 Uncharacterized conser 80.8 9.7 0.00021 36.6 8.0 88 372-460 619-706 (886)
379 smart00028 TPR Tetratricopepti 79.6 4.4 9.5E-05 20.6 3.7 29 432-460 3-31 (34)
380 PF08424 NRDE-2: NRDE-2, neces 79.3 50 0.0011 30.1 17.1 118 307-426 48-185 (321)
381 PRK09687 putative lyase; Provi 79.1 46 0.00099 29.6 28.8 17 149-165 67-83 (280)
382 KOG2063 Vacuolar assembly/sort 78.9 63 0.0014 33.8 13.5 26 258-283 507-532 (877)
383 KOG4077 Cytochrome c oxidase, 78.6 20 0.00043 26.7 7.3 45 416-460 70-114 (149)
384 PF04910 Tcf25: Transcriptiona 78.5 57 0.0012 30.3 20.1 55 298-352 111-166 (360)
385 PF12862 Apc5: Anaphase-promot 78.1 14 0.0003 26.1 6.6 55 406-460 9-71 (94)
386 KOG0530 Protein farnesyltransf 77.9 45 0.00097 28.8 14.7 47 413-460 131-177 (318)
387 PF10579 Rapsyn_N: Rapsyn N-te 77.7 12 0.00026 25.1 5.6 49 407-455 18-68 (80)
388 PRK11619 lytic murein transgly 77.4 87 0.0019 31.9 37.4 207 268-507 254-464 (644)
389 PF14853 Fis1_TPR_C: Fis1 C-te 76.7 13 0.00029 22.8 5.2 28 433-460 4-31 (53)
390 KOG0551 Hsp90 co-chaperone CNS 74.8 18 0.00039 32.2 7.4 66 435-518 86-153 (390)
391 KOG2066 Vacuolar assembly/sort 74.7 1E+02 0.0022 31.3 27.8 102 87-197 363-467 (846)
392 PF11846 DUF3366: Domain of un 74.6 12 0.00025 31.0 6.4 34 480-515 142-175 (193)
393 PF07163 Pex26: Pex26 protein; 74.5 59 0.0013 28.4 12.6 57 52-108 90-146 (309)
394 KOG1308 Hsp70-interacting prot 74.2 6.2 0.00013 35.1 4.6 121 335-460 124-245 (377)
395 PF07575 Nucleopor_Nup85: Nup8 74.0 1E+02 0.0022 30.9 17.5 25 494-518 507-531 (566)
396 PRK10941 hypothetical protein; 74.0 50 0.0011 29.0 10.1 59 400-460 186-245 (269)
397 KOG3364 Membrane protein invol 72.8 39 0.00086 25.7 8.3 67 393-460 30-101 (149)
398 PF09670 Cas_Cas02710: CRISPR- 72.7 71 0.0015 29.9 11.5 57 17-74 138-198 (379)
399 PF09670 Cas_Cas02710: CRISPR- 72.5 46 0.001 31.1 10.2 55 334-389 140-198 (379)
400 KOG4077 Cytochrome c oxidase, 72.5 29 0.00063 25.9 6.8 38 316-353 75-112 (149)
401 KOG0890 Protein kinase of the 72.5 2.1E+02 0.0045 33.8 31.3 62 430-511 1670-1731(2382)
402 KOG0551 Hsp90 co-chaperone CNS 71.9 37 0.0008 30.4 8.6 97 362-460 83-183 (390)
403 KOG4567 GTPase-activating prot 69.3 59 0.0013 28.8 9.1 71 345-420 263-343 (370)
404 PRK12798 chemotaxis protein; R 68.7 1E+02 0.0022 28.8 21.7 203 303-523 125-336 (421)
405 KOG2063 Vacuolar assembly/sort 68.7 1.6E+02 0.0035 31.0 18.6 39 124-162 600-638 (877)
406 TIGR02508 type_III_yscG type I 68.3 41 0.00088 24.0 8.9 13 126-138 50-62 (115)
407 COG4259 Uncharacterized protei 68.2 40 0.00086 23.9 6.7 41 484-526 74-114 (121)
408 PF14561 TPR_20: Tetratricopep 68.2 38 0.00083 23.7 8.5 34 427-460 19-52 (90)
409 COG2912 Uncharacterized conser 68.1 49 0.0011 28.8 8.5 74 436-529 187-260 (269)
410 COG4976 Predicted methyltransf 67.9 17 0.00036 30.5 5.4 65 439-523 4-68 (287)
411 PF08311 Mad3_BUB1_I: Mad3/BUB 67.6 51 0.0011 24.9 9.6 44 413-456 81-125 (126)
412 PF04190 DUF410: Protein of un 67.3 87 0.0019 27.5 16.3 83 357-459 87-170 (260)
413 KOG2908 26S proteasome regulat 67.3 58 0.0013 29.3 8.8 84 438-535 83-174 (380)
414 PF11846 DUF3366: Domain of un 66.6 32 0.0007 28.4 7.3 35 426-460 140-174 (193)
415 PF14689 SPOB_a: Sensor_kinase 65.7 18 0.00038 23.1 4.3 29 44-72 22-50 (62)
416 PF07720 TPR_3: Tetratricopept 65.7 14 0.00031 20.4 3.3 23 484-506 3-25 (36)
417 PF14689 SPOB_a: Sensor_kinase 64.8 20 0.00043 22.9 4.4 30 481-510 22-51 (62)
418 cd02680 MIT_calpain7_2 MIT: do 64.1 17 0.00037 24.3 4.1 17 494-510 18-34 (75)
419 KOG2300 Uncharacterized conser 63.6 1.4E+02 0.0031 28.6 38.1 426 16-461 13-516 (629)
420 PF11663 Toxin_YhaV: Toxin wit 63.0 8.6 0.00019 28.9 2.8 30 22-53 107-136 (140)
421 COG0735 Fur Fe2+/Zn2+ uptake r 62.7 54 0.0012 25.5 7.3 63 31-94 7-69 (145)
422 PF13934 ELYS: Nuclear pore co 62.7 98 0.0021 26.4 10.6 21 121-141 114-134 (226)
423 cd08819 CARD_MDA5_2 Caspase ac 62.7 49 0.0011 22.9 7.5 65 29-99 21-85 (88)
424 PF11848 DUF3368: Domain of un 62.7 31 0.00067 20.6 5.1 32 21-52 13-44 (48)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 65 0.0014 24.3 13.3 82 409-509 40-126 (126)
426 PF10255 Paf67: RNA polymerase 62.0 17 0.00037 33.8 5.1 65 434-509 126-191 (404)
427 PF13934 ELYS: Nuclear pore co 61.9 1E+02 0.0022 26.3 10.3 103 48-161 79-183 (226)
428 cd00280 TRFH Telomeric Repeat 61.8 86 0.0019 25.5 10.8 21 123-143 119-139 (200)
429 PRK12798 chemotaxis protein; R 61.7 1.4E+02 0.0031 28.0 20.0 230 192-431 88-331 (421)
430 KOG3807 Predicted membrane pro 61.7 1.2E+02 0.0026 27.2 13.0 58 400-459 280-340 (556)
431 smart00386 HAT HAT (Half-A-TPR 61.6 21 0.00046 18.4 4.2 17 444-460 1-17 (33)
432 PF00244 14-3-3: 14-3-3 protei 60.5 1.1E+02 0.0024 26.3 10.5 49 412-460 143-199 (236)
433 PF09477 Type_III_YscG: Bacter 59.8 64 0.0014 23.4 8.5 78 25-109 21-98 (116)
434 COG0735 Fur Fe2+/Zn2+ uptake r 59.1 72 0.0016 24.9 7.5 43 140-183 11-53 (145)
435 PF02184 HAT: HAT (Half-A-TPR) 59.1 27 0.00058 18.7 3.7 27 445-490 2-28 (32)
436 PRK11619 lytic murein transgly 58.7 2.2E+02 0.0047 29.1 40.6 338 84-455 103-464 (644)
437 COG4941 Predicted RNA polymera 57.3 1.5E+02 0.0033 26.8 12.9 128 374-523 270-404 (415)
438 PHA02875 ankyrin repeat protei 57.0 1.8E+02 0.0039 27.6 11.8 76 21-104 10-89 (413)
439 PF09477 Type_III_YscG: Bacter 56.5 74 0.0016 23.1 8.4 29 480-510 69-97 (116)
440 PF11663 Toxin_YhaV: Toxin wit 56.1 12 0.00026 28.2 2.6 40 484-525 97-136 (140)
441 KOG0376 Serine-threonine phosp 55.9 45 0.00097 31.5 6.6 106 331-441 10-116 (476)
442 KOG1839 Uncharacterized protei 55.6 2.2E+02 0.0048 31.2 12.0 166 332-507 939-1124(1236)
443 KOG3677 RNA polymerase I-assoc 55.0 1.5E+02 0.0031 27.8 9.3 61 47-107 237-299 (525)
444 cd08819 CARD_MDA5_2 Caspase ac 54.8 69 0.0015 22.2 7.1 15 233-247 49-63 (88)
445 KOG2659 LisH motif-containing 54.6 1.3E+02 0.0029 25.4 8.9 20 368-387 72-91 (228)
446 PRK10564 maltose regulon perip 54.5 26 0.00057 30.9 4.7 43 393-435 254-297 (303)
447 PF11848 DUF3368: Domain of un 54.4 45 0.00097 19.9 4.8 24 164-187 16-39 (48)
448 cd00280 TRFH Telomeric Repeat 53.8 1.2E+02 0.0026 24.7 11.3 41 156-199 117-157 (200)
449 PF15297 CKAP2_C: Cytoskeleton 53.5 1.8E+02 0.0039 26.6 9.8 61 446-525 119-183 (353)
450 smart00777 Mad3_BUB1_I Mad3/BU 53.5 96 0.0021 23.4 8.8 23 484-506 101-123 (125)
451 COG5108 RPO41 Mitochondrial DN 53.2 1.1E+02 0.0024 30.5 8.8 75 15-92 33-115 (1117)
452 PRK10564 maltose regulon perip 53.1 41 0.00089 29.7 5.6 47 477-523 251-298 (303)
453 PF13762 MNE1: Mitochondrial s 51.7 1.1E+02 0.0025 23.7 10.4 82 82-163 41-128 (145)
454 PF04781 DUF627: Protein of un 51.5 95 0.002 22.8 7.3 24 437-460 3-26 (111)
455 TIGR02508 type_III_yscG type I 51.3 89 0.0019 22.4 8.8 50 54-109 48-97 (115)
456 PRK15180 Vi polysaccharide bio 50.1 2.4E+02 0.0052 27.0 30.8 89 89-179 332-420 (831)
457 PF10516 SHNi-TPR: SHNi-TPR; 50.0 45 0.00098 18.7 3.7 27 484-510 3-29 (38)
458 KOG0890 Protein kinase of the 49.8 5.2E+02 0.011 30.9 35.9 321 15-354 1388-1731(2382)
459 PF10366 Vps39_1: Vacuolar sor 49.2 1E+02 0.0022 22.5 7.3 27 484-510 41-67 (108)
460 COG5191 Uncharacterized conser 48.9 59 0.0013 28.8 5.8 66 9-75 106-172 (435)
461 PHA02537 M terminase endonucle 48.9 1.7E+02 0.0037 25.0 12.4 43 484-526 171-222 (230)
462 PF09454 Vps23_core: Vps23 cor 48.5 36 0.00078 22.0 3.5 50 7-57 5-54 (65)
463 KOG1839 Uncharacterized protei 48.5 2.8E+02 0.0061 30.4 11.5 157 300-456 942-1125(1236)
464 PF00244 14-3-3: 14-3-3 protei 47.9 1.8E+02 0.004 25.0 9.9 41 225-265 6-46 (236)
465 cd02681 MIT_calpain7_1 MIT: do 47.5 44 0.00095 22.5 4.0 17 494-510 18-34 (76)
466 KOG0687 26S proteasome regulat 47.3 2.2E+02 0.0047 25.8 11.4 149 374-537 36-200 (393)
467 PF11817 Foie-gras_1: Foie gra 46.4 1.1E+02 0.0023 26.7 7.3 22 190-211 183-204 (247)
468 cd02682 MIT_AAA_Arch MIT: doma 45.7 91 0.002 20.9 5.2 40 491-530 15-62 (75)
469 COG4976 Predicted methyltransf 45.2 76 0.0016 26.9 5.7 56 405-462 5-61 (287)
470 KOG4567 GTPase-activating prot 44.8 1.5E+02 0.0033 26.4 7.6 71 170-245 263-343 (370)
471 cd07153 Fur_like Ferric uptake 44.3 70 0.0015 23.6 5.3 45 16-60 6-50 (116)
472 PF10475 DUF2450: Protein of u 43.3 2.5E+02 0.0053 25.2 9.5 114 86-210 104-222 (291)
473 KOG0530 Protein farnesyltransf 43.1 2.3E+02 0.005 24.8 13.4 118 374-511 57-176 (318)
474 PF04212 MIT: MIT (microtubule 42.9 55 0.0012 21.3 4.0 18 493-510 16-33 (69)
475 PF11817 Foie-gras_1: Foie gra 42.6 1.4E+02 0.003 26.0 7.5 22 365-386 183-204 (247)
476 PF15015 NYD-SP12_N: Spermatog 41.8 53 0.0011 30.5 4.7 48 486-537 232-281 (569)
477 PF02607 B12-binding_2: B12 bi 41.8 50 0.0011 22.2 3.8 43 493-535 12-54 (79)
478 COG0790 FOG: TPR repeat, SEL1 41.7 2.6E+02 0.0055 24.9 24.7 47 342-391 172-222 (292)
479 cd02683 MIT_1 MIT: domain cont 41.5 64 0.0014 21.8 4.1 26 494-519 18-48 (77)
480 cd02684 MIT_2 MIT: domain cont 41.4 62 0.0013 21.7 4.0 17 494-510 18-34 (75)
481 PF03745 DUF309: Domain of unk 41.3 95 0.002 19.9 5.9 19 21-39 10-28 (62)
482 PF01475 FUR: Ferric uptake re 40.9 69 0.0015 23.8 4.8 45 15-59 12-56 (120)
483 KOG2034 Vacuolar sorting prote 40.2 4.7E+02 0.01 27.5 26.8 299 18-352 366-688 (911)
484 TIGR02710 CRISPR-associated pr 40.2 3.2E+02 0.0069 25.6 10.7 16 494-509 258-273 (380)
485 COG5108 RPO41 Mitochondrial DN 40.1 2.2E+02 0.0048 28.6 8.6 91 85-178 33-131 (1117)
486 PF04910 Tcf25: Transcriptiona 39.7 3.2E+02 0.0069 25.5 21.2 51 194-244 112-163 (360)
487 KOG0403 Neoplastic transformat 39.2 3.5E+02 0.0076 25.8 18.1 373 13-405 217-626 (645)
488 PRK09462 fur ferric uptake reg 39.1 1.9E+02 0.004 22.6 7.5 59 36-95 8-67 (148)
489 PRK13800 putative oxidoreducta 39.1 5.3E+02 0.012 27.9 26.7 126 358-510 754-880 (897)
490 PRK11639 zinc uptake transcrip 38.8 2.1E+02 0.0045 23.1 7.9 60 36-96 17-76 (169)
491 KOG4279 Serine/threonine prote 38.6 4.6E+02 0.01 27.0 16.4 232 202-480 145-398 (1226)
492 KOG0686 COP9 signalosome, subu 38.1 3.5E+02 0.0075 25.5 14.6 61 258-318 153-215 (466)
493 PHA02537 M terminase endonucle 37.8 2.6E+02 0.0057 23.9 11.3 30 153-182 86-115 (230)
494 KOG2297 Predicted translation 37.0 3.1E+02 0.0068 24.6 18.3 21 360-380 321-341 (412)
495 PHA02875 ankyrin repeat protei 36.9 3.8E+02 0.0081 25.5 12.2 10 88-97 40-49 (413)
496 PRK09857 putative transposase; 36.7 3.2E+02 0.0069 24.6 9.7 64 435-516 211-274 (292)
497 PF12926 MOZART2: Mitotic-spin 36.2 1.5E+02 0.0032 20.6 8.4 43 31-73 29-71 (88)
498 KOG2062 26S proteasome regulat 35.8 5.1E+02 0.011 26.7 33.6 175 334-532 510-698 (929)
499 PF09454 Vps23_core: Vps23 cor 35.6 1.2E+02 0.0027 19.6 4.7 48 393-441 6-53 (65)
500 KOG0545 Aryl-hydrocarbon recep 35.3 3E+02 0.0064 23.8 12.4 64 396-460 231-294 (329)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=525.38 Aligned_cols=503 Identities=20% Similarity=0.313 Sum_probs=476.8
Q ss_pred CCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH
Q 009255 5 GCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGL-VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTY 83 (539)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 83 (539)
...++...|..++..|.+.|++++|.++|++|...|+ +++..++..++..|.+.|.+++|..+|+.|.. |+..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 4566788899999999999999999999999999985 56777888999999999999999999999874 899999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009255 84 NMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKE 163 (539)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (539)
+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 009255 164 GKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGR--KGLKMNTITLNTILHTLCCEKKLDEAYM 241 (539)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (539)
|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999976 6789999999999999999999999999
Q ss_pred HHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009255 242 LLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGM 321 (539)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (539)
+|+.+.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+.++|.+++++|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 009255 322 IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTL 401 (539)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (539)
.|+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|..||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHH
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----S-------------------GRLEEAQKFTSIMVE 458 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~ 458 (539)
+.+|++.|++++|.+++.+|.+.|+.||..+|..++..|.+ . +..++|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998866432 1 224679999999999
Q ss_pred cCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 459 TGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
.+.. |+..+|..++.+++..+..+.+..+++.+...+..|+..+|..++.++.
T Consensus 841 ~Gi~-----------------Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 841 AGTL-----------------PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred CCCC-----------------CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 8865 9999999999888888999999999998887778888999999998873
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.7e-68 Score=526.48 Aligned_cols=495 Identities=19% Similarity=0.264 Sum_probs=467.0
Q ss_pred CCCCCC-CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC
Q 009255 1 MEGFGC-LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPD 79 (539)
Q Consensus 1 m~~~g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 79 (539)
|.+.|+ +|+..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||
T Consensus 396 M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD 471 (1060)
T PLN03218 396 MEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKAD 471 (1060)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC
Confidence 455664 57888889999999999999999999999974 8999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009255 80 VWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKW 159 (539)
Q Consensus 80 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (539)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHH
Q 009255 160 YCKEGKIDKACKIVRNMEE--NGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLD 237 (539)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 237 (539)
|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|+++
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHH
Confidence 9999999999999999986 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 009255 238 EAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELL 317 (539)
Q Consensus 238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 317 (539)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.++.|+..+|+.++.+|++.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 009255 318 QSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVT 397 (539)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 397 (539)
..++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.+++++|.+.|+.||..+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc----c-------------------CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 398 YNTLISSLCK----E-------------------RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 398 ~~~l~~~~~~----~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
|+.++..|.+ . +..++|+.+|++|.+.|+.||..+|..++.++...+..+.+..+++
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 9999865432 1 2346799999999999999999999999988888888999888888
Q ss_pred HHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 455 IMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
.+...+. .|+..+|+.+++++.+. .++|..++++|.+.|+.|+..
T Consensus 872 ~m~~~~~-----------------~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 872 NLGISAD-----------------SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhccCCC-----------------CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 7766553 37888999999998432 468999999999999999974
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-67 Score=536.09 Aligned_cols=491 Identities=22% Similarity=0.311 Sum_probs=424.7
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----------------------------------HHHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNR-----------------------------------TTYNIL 51 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------------------------~~~~~l 51 (539)
+||..+|+.+|.+|.+.|++++|..+|++|...|+.||. .+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 355566666666666666666666666666555555554 455666
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 009255 52 VSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRS 131 (539)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (539)
+.+|++.|+++.|..+|+.|.. ||..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 6677777777777777777753 577778888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 132 MEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888886 468888999999999999999999999999
Q ss_pred hhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHh
Q 009255 212 GRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTF 291 (539)
Q Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 291 (539)
.+.|+.||..|+..++.+|++.|+++.+.++++.+.+.|..++..+++.|+.+|.+.|++++|.++|++|.+ +|..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCee
Confidence 988999999999999999999999999999999999999999999999999999999999999999998865 4788
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 009255 292 TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLC 371 (539)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 371 (539)
+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5889999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 451 (539)
++|++++|.++|+.+ .||..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||..++.+|.+.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 999999999999886 569999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009255 452 FTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRR 531 (539)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 531 (539)
+|+.|.+.... .|+..+|+.++++|.+.|++++|.+++++|. +.||..+|..++++|...
T Consensus 611 ~f~~M~~~~gi----------------~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~- 670 (857)
T PLN03077 611 YFHSMEEKYSI----------------TPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIH- 670 (857)
T ss_pred HHHHHHHHhCC----------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc-
Confidence 99999955433 5999999999999999999999999999984 789999999999988543
Q ss_pred Cchh
Q 009255 532 KSIS 535 (539)
Q Consensus 532 ~~~~ 535 (539)
++.+
T Consensus 671 ~~~e 674 (857)
T PLN03077 671 RHVE 674 (857)
T ss_pred CChH
Confidence 3344
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-66 Score=526.71 Aligned_cols=519 Identities=18% Similarity=0.269 Sum_probs=468.0
Q ss_pred CCCCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh
Q 009255 2 EGFGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVW 81 (539)
Q Consensus 2 ~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 81 (539)
...|++|+..+|..++.+|.+.+.++.+..++..+.+.+..++...++.++..|.+.|+++.|.++|++|.. ||..
T Consensus 78 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~ 153 (857)
T PLN03077 78 QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLF 153 (857)
T ss_pred HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCee
Confidence 345666777777777777777777777777777777666666777778888888888888889888888863 6888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009255 82 TYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYC 161 (539)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (539)
+|+.+|.+|++.|++++|+.+|++|...|+.||..+|+.++.+|...+++..+.+++..+.+.|+.||..+++.++.+|+
T Consensus 154 ~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred EHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHh
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 009255 162 KEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYM 241 (539)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (539)
+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..||..++.+|++.|+.+.+.+
T Consensus 234 k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 234 KCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred cCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 9999999999999986 478999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009255 242 LLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGM 321 (539)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (539)
++..+.+.|+.||..+|+.|+.+|.+.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|.+.|+
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999864 5889999999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 009255 322 IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTL 401 (539)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (539)
.|+..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999864 588999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCC----------
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNT---------- 471 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---------- 471 (539)
+.+|++.|+.++|+.+|++|.. ++.||..+|..++.+|.+.|+.+.+.+++..+++.+...+..+.+..
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 58999999999999999999999999999999988866555544320
Q ss_pred ---CCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhcc
Q 009255 472 ---SKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 472 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
........|+..+|+.++.+|++.|+.++|+++|++|.+.|+.||..|+..++.+|.+.+. .++|.
T Consensus 541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~-v~ea~ 609 (857)
T PLN03077 541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM-VTQGL 609 (857)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh-HHHHH
Confidence 0111122688889999999999999999999999999999999999999999999888765 77764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-63 Score=492.44 Aligned_cols=476 Identities=21% Similarity=0.289 Sum_probs=454.6
Q ss_pred CCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 009255 6 CLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQG-LVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYN 84 (539)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (539)
..++..+|+.+|..|.+.|++++|.++|+.|...+ +.|+..+|+.++.+|.+.++++.+.+++..|.+.|..|+..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34466699999999999999999999999999864 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009255 85 MLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEG 164 (539)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (539)
.++.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 999999999999999999999974 8999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHH
Q 009255 165 KIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLN 244 (539)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (539)
..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999964 588999999999999999999999999
Q ss_pred HHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009255 245 SASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD 324 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (539)
+|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.++.||..+++.++.+|.+.|++++|.++|++|.+ ||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999864 68
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 009255 325 ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWIL-KGKAVDSVTYNTLIS 403 (539)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~ 403 (539)
..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|..|+..+|+.++.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
+|++.|++++|.+++++| ++.|+..+|..++.+|...|+++.|.++++++.+.. +.+..
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~------------------p~~~~ 529 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG------------------PEKLN 529 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC------------------CCCCc
Confidence 999999999999999876 578999999999999999999999999999998765 33456
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIA 514 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (539)
+|..++..|++.|++++|.+++++|.+.|++
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999999999875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-61 Score=479.45 Aligned_cols=441 Identities=21% Similarity=0.313 Sum_probs=423.4
Q ss_pred CCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHH
Q 009255 5 GCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYN 84 (539)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (539)
++.||..+|+.++.+|.+.++++.+..++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|.+ ||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 578999999999999999999999999999999999999999999999999999999999999999974 7999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009255 85 MLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEG 164 (539)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (539)
.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.++...|..+.+.+++..+.+.|+.||..+++.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHH
Q 009255 165 KIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLN 244 (539)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 244 (539)
++++|.++|+.|. ++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||..++.+|++.|+++.|.+++.
T Consensus 274 ~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999996 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 009255 245 SASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD 324 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 324 (539)
.+.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999965 5899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 325 ETTFNTIIHGFCSEGQVEKALQFHNKMVE-KSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|+.++.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 589999999999999999999999999999865 46799999999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.|++++|.++++.|.+.+..
T Consensus 503 a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999974 4554 678999999999999999999999999998854
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9e-34 Score=296.83 Aligned_cols=495 Identities=13% Similarity=0.076 Sum_probs=256.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
+...+..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..+. .......++.
T Consensus 362 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 439 (899)
T TIGR02917 362 DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLIL 439 (899)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHH
Confidence 34455566666666666666666666665543 334445555555555555555555555555544322 1222233334
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 009255 89 GWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (539)
.+.+.|++++|..+++++.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..++..+...|++++
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 4444444444444444444321 2334445555555555555555555555544432 1133334444444444444444
Q ss_pred HHHHHHHHHHcCCCCChhhHHH----------------------------------HHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 169 ACKIVRNMEENGFSPDCVTYNT----------------------------------LIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~~----------------------------------l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
|.+.++.+.+.+ +.+..++.. ++..+...|++++|..+++.+...
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 596 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 444444444332 223333334 444444444444444444444332
Q ss_pred CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 009255 215 GLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYN 294 (539)
Q Consensus 215 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (539)
. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++....+. +..++.
T Consensus 597 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 673 (899)
T TIGR02917 597 A-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQI 673 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 1 2234444444444555555555555555444432 113334444444555555555555555554443222 344445
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 009255 295 AMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREG 374 (539)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 374 (539)
.++..+...|++++|..+++.+....+ .+...+..+...+...|++++|...|+.+.... |+..++..++.++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCC
Confidence 555555555555555555555544432 234445555555555666666666666555542 23344555555566666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 375 ILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
++++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+.. +++..++..++..+...|+ .+|+.+++
T Consensus 751 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 6666666666655542 2245555666666666666666666666666543 3445555566666666666 55666666
Q ss_pred HHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCc
Q 009255 455 IMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAI-NKSTYMNLMNGLIKRRKS 533 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 533 (539)
++++.. +.+...+..++.++...|++++|.+.++++++.+ | +..++..+...+.+. |+
T Consensus 828 ~~~~~~------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~-g~ 886 (899)
T TIGR02917 828 KALKLA------------------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLAT-GR 886 (899)
T ss_pred HHHhhC------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHc-CC
Confidence 666554 2233377788888888899999999999988743 4 444555555555554 44
Q ss_pred hhhcc
Q 009255 534 ISKAV 538 (539)
Q Consensus 534 ~~~A~ 538 (539)
.++|.
T Consensus 887 ~~~A~ 891 (899)
T TIGR02917 887 KAEAR 891 (899)
T ss_pred HHHHH
Confidence 77774
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.5e-34 Score=297.01 Aligned_cols=467 Identities=13% Similarity=0.105 Sum_probs=399.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
.....++..+.+.|++++|..+++.+.... +.++.++..++..+...|++++|.+.|+++.+..+. +...+..+...+
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 509 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARID 509 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Confidence 344556667777777778887777777653 567778888888899999999999999988876543 566777788888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 009255 91 CNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKAC 170 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 170 (539)
...|++++|.+.|+++.... +.+..++..+...+...|++++|..+++++...+ +.+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 88999999999999988764 4567788888899999999999999999987764 346677888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 009255 171 KIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRG 250 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (539)
.+++.+.+.. +.+...|..+..++...|++++|+..++.+.+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999998753 5677889999999999999999999999998764 3467788889999999999999999999998874
Q ss_pred CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 009255 251 YYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNT 330 (539)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (539)
+.+...+..++..+...|++++|..+++.+....+. +...+..+...+...|++++|...++++.... |+..++..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 741 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIK 741 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHH
Confidence 336788899999999999999999999999887643 77888889999999999999999999999865 44467778
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCC
Q 009255 331 IIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERR 410 (539)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 410 (539)
++.++...|++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+.. ++++.+++.++..+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 8999999999999999999999874 4578899999999999999999999999999874 4478899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHH
Q 009255 411 LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKIN 490 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (539)
.+|+..++++.... +.+..++..++.++...|++++|.++++++++.+ +.+..++..++.
T Consensus 820 -~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------------------~~~~~~~~~l~~ 879 (899)
T TIGR02917 820 -PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA------------------PEAAAIRYHLAL 879 (899)
T ss_pred -HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------CCChHHHHHHHH
Confidence 88999999998753 3345677788899999999999999999999987 346669999999
Q ss_pred HHhhcCCHHHHHHHHHHHH
Q 009255 491 EHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~ 509 (539)
++.+.|++++|.+++++|+
T Consensus 880 ~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 880 ALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHh
Confidence 9999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-26 Score=242.88 Aligned_cols=504 Identities=12% Similarity=0.021 Sum_probs=322.6
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH----------------HHHHHHHHccCCHhHHHHHHHHH
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTY----------------NILVSGYCKLGWLKEAMRVVDLM 71 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~ 71 (539)
-|+..+..++..+.+.|+.++|.+.++++.+.. |.++... ..+...+...|++++|.+.|+.+
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 366777888888889999999999999998875 4344432 33345677889999999999988
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC-----
Q 009255 72 TQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGI----- 146 (539)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----- 146 (539)
.+.+++........+.......|+.++|++.++++.+.. +.+...+..+...+...|+.++|++.++++.....
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~a 217 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAA 217 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHH
Confidence 876433211111111222234588889999999988764 44566777888888888999999888888754310
Q ss_pred -------------C--------------CCHHHH---------------------HHHHHHHHhcCCHhHHHHHHHHHHH
Q 009255 147 -------------K--------------PNAVTH---------------------NIMIKWYCKEGKIDKACKIVRNMEE 178 (539)
Q Consensus 147 -------------~--------------~~~~~~---------------------~~l~~~~~~~g~~~~a~~~~~~~~~ 178 (539)
. |+.... ......+...|++++|+..|++..+
T Consensus 218 a~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~ 297 (1157)
T PRK11447 218 AQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVR 297 (1157)
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0 110000 0113445667888889988888887
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhH------------HHHHHHHhccCCHHHHHHHHHH
Q 009255 179 NGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKM-NTITL------------NTILHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 179 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~ 245 (539)
.. +.+...+..+..++.+.|++++|+..|++..+..... ....+ ......+...|++++|...+++
T Consensus 298 ~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 298 AN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 63 3467778888888888999999999988887653221 11111 1224456678888889888888
Q ss_pred HhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHH----------------------------
Q 009255 246 ASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMI---------------------------- 297 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------------------------- 297 (539)
+..... .+...+..+...+...|++++|++.|+++....+. +...+..+.
T Consensus 377 Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 377 ARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHH
Confidence 887743 35566777888888888999999888888776433 333333222
Q ss_pred --------------HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhH
Q 009255 298 --------------WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTC 363 (539)
Q Consensus 298 --------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (539)
..+...|++++|+..++++.+..+. +...+..+...+...|++++|...++++++.. +.+...+
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 2344567777777777777765432 45556667777777777777777777776643 2233333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------------CCCCChhhHHHHHHH
Q 009255 364 NILLSGLCREGILEKALKFFRSWILK---------------------------------------GKAVDSVTYNTLISS 404 (539)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~ 404 (539)
..+...+...++.++|...++.+... ..+.++..+..+...
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~ 612 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADW 612 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHH
Confidence 33333333344444444333322100 022344455666677
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-h
Q 009255 405 LCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-I 483 (539)
Q Consensus 405 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 483 (539)
+...|++++|+..|+++++.. +.+...+..++.++...|++++|++.++.+++.. |+. .
T Consensus 613 ~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-------------------p~~~~ 672 (1157)
T PRK11447 613 AQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-------------------NDSLN 672 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-------------------CCChH
Confidence 777777777777777777642 3345666677777777777777777777766654 333 3
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHHHhcCCchhhcc
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGI-AIN---KSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~---~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
.+..++.++...|++++|.++++++++..- .|. .......++.++...|+.++|+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 666677777777888888887777775321 111 2233344566777777777775
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=2.8e-26 Score=239.75 Aligned_cols=472 Identities=14% Similarity=0.055 Sum_probs=335.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 14 NTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTT-YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
......+.+.|++++|+..|+.+.+.+ +|+... ...........|+.++|++.++++.+..+. +...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHc
Confidence 344556788899999999999988764 444331 212222233468888999999988887544 66677788888888
Q ss_pred cCChHHHHHHHHHHHhCCC------------------C--------------CChhhH---------------------H
Q 009255 93 AGMLEEAFRLRKEMESLKL------------------L--------------PDVVTY---------------------N 119 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~---------------------~ 119 (539)
.|+.++|+..++++..... . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 8998888888888754310 0 000000 0
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-ChhhH----------
Q 009255 120 TLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSP-DCVTY---------- 188 (539)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~---------- 188 (539)
.....+...|++++|+..|++..+... .+...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 113445667889999999988887632 367788888888999999999999998888753211 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHH-------
Q 009255 189 --NTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYG------- 259 (539)
Q Consensus 189 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 259 (539)
......+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+.... +...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 122345678888999999998888764 335666777888888889999999888888765322 222222
Q ss_pred -----------------------------------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCC
Q 009255 260 -----------------------------------TLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSG 304 (539)
Q Consensus 260 -----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 304 (539)
.+...+...|++++|++.|++.++..+. +...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 2233455679999999999999887654 6778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC------------------------------
Q 009255 305 KTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK------------------------------ 354 (539)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------ 354 (539)
++++|...++++.+..+. +...+..+...+...++.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999998875432 3333322323333444444444443332110
Q ss_pred ---------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 009255 355 ---------SFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK 425 (539)
Q Consensus 355 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 425 (539)
..+.+...+..+...+.+.|++++|+..|+++....+ .++..+..++..+...|++++|+..++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 1234566777889999999999999999999998743 377889999999999999999999999888542
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCC---ChhhHHHHHHHHhhcCCHHHHH
Q 009255 426 LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDP---SSISYSEKINEHCSQGRYKDAL 502 (539)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~ 502 (539)
+.+..+...++.++...|++++|.+++++++..... .+| +...+..++..+...|++++|+
T Consensus 668 -p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~---------------~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 668 -NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS---------------QPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred -CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc---------------CCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 334566777888999999999999999999987522 012 1236677899999999999999
Q ss_pred HHHHHHH
Q 009255 503 QIFEETR 509 (539)
Q Consensus 503 ~~~~~~~ 509 (539)
+.|++++
T Consensus 732 ~~y~~Al 738 (1157)
T PRK11447 732 ETYKDAM 738 (1157)
T ss_pred HHHHHHH
Confidence 9999997
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.97 E-value=4.6e-27 Score=208.62 Aligned_cols=439 Identities=15% Similarity=0.071 Sum_probs=360.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 009255 48 YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE 127 (539)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (539)
...|..-..+.|++.+|++.-..+-+.++. +....-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 456666777899999999988877766433 3344444556667777777665544444433 24457789999999999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCHHHHHH
Q 009255 128 SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTY-NTLIDANCKAGNMEEAFR 206 (539)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 206 (539)
.|+++.|+.+++.+.+...+ ....|..+..++...|+.+.|.+.|...++. .|+.... ..+....-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999999987433 6788999999999999999999999998875 4655433 334455556899999999
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 009255 207 MMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQI 286 (539)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (539)
.|.+.+.... --...|..+...+-.+|+...|++.|+++.+.... -...|-.|...|...+.+++|...|.+.....+
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 9988877532 23456788888888999999999999999987432 356788899999999999999999999887654
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 009255 287 MPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNIL 366 (539)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (539)
. ....+..+...|-.+|..+.|+..+++.++..+. -+..|+.+..++-..|++.+|.+.|.+.+... +......+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 3 5677778888899999999999999999986433 46789999999999999999999999999874 3467788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCC
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGR 445 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 445 (539)
...|...|.+++|..+|....+..+. -...++.|...|-++|++++|+..|++++ .+.|+ ...+..++..|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998886222 34578999999999999999999999999 46888 4789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 446 LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 446 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
.+.|++.+.+++..+ |... +.++|+..|-..|+..+|++.|+++++ ++||....
T Consensus 438 v~~A~q~y~rAI~~n-------------------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA 492 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQIN-------------------PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDA 492 (966)
T ss_pred HHHHHHHHHHHHhcC-------------------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchh
Confidence 999999999999987 7766 999999999999999999999999997 78886644
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-25 Score=199.27 Aligned_cols=450 Identities=15% Similarity=0.115 Sum_probs=371.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
...+.....+.|++.+|++.-..+-..+ +.+......+-..+.+..+++....--....+..+. -..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 4556777888999999999888777665 445555556666777777777766555555554433 67899999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHhHHHH
Q 009255 93 AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTH-NIMIKWYCKEGKIDKACK 171 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~ 171 (539)
.|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.... ..+.......|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999999864 346789999999999999999999999998875 4554433 334455566899999999
Q ss_pred HHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 009255 172 IVRNMEENGFSPD-CVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRG 250 (539)
Q Consensus 172 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 250 (539)
.+.+..+. .|. ...|..|...+..+|+...|++.|++..+... .-...|..+...|...+.++.|...+.++....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 99998876 343 55788999999999999999999999987632 245678899999999999999999999887763
Q ss_pred CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 009255 251 YYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNT 330 (539)
Q Consensus 251 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 330 (539)
+.....+..+...|..+|..+.|+..|++.++..+. -+..|+.+..++-..|++.+|.+.+.+.+...+. .....+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 225667888888999999999999999999987554 4789999999999999999999999999886432 5668889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccC
Q 009255 331 IIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD-SVTYNTLISSLCKER 409 (539)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 409 (539)
+...+...|.++.|..+|....+.. +.-....+.|...|.++|++++|+..+++.+.. .|+ ...|+.++..|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence 9999999999999999999999863 234567889999999999999999999999875 455 458999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHH
Q 009255 410 RLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSE 487 (539)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 487 (539)
+.+.|++.+.+++. +.|. ...+..|+..+...|+..+|++-|+.+++.. ||.. ++.+
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-------------------PDfpdA~cN 495 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-------------------PDFPDAYCN 495 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-------------------CCCchhhhH
Confidence 99999999999995 4676 5788899999999999999999999999987 7666 7877
Q ss_pred HHHHHhhcCC
Q 009255 488 KINEHCSQGR 497 (539)
Q Consensus 488 l~~~~~~~g~ 497 (539)
++.++.-..+
T Consensus 496 llh~lq~vcd 505 (966)
T KOG4626|consen 496 LLHCLQIVCD 505 (966)
T ss_pred HHHHHHHHhc
Confidence 7777654433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=3.1e-22 Score=200.04 Aligned_cols=222 Identities=12% Similarity=0.013 Sum_probs=142.8
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
+...|..+..++.. +++++|+..+.+..... |+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666655 67777777666666543 34333333344445777788887777776554 333444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
++.+.|++++|...+++.....+ .+...+..+.......|++++|...+++.++. .|+...+..++.++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 67777777777777777776531 12223333333344557777777777777754 4566667777777777777777
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
|++.++++++.. |.+...+..++.++...|++++|++.++++++ ..|+.......++.++
T Consensus 628 A~~~l~~AL~l~------------------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al 687 (987)
T PRK09782 628 AVSDLRAALELE------------------PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 777777777776 22333777777777777777777777777776 4677776666666666
Q ss_pred hcCCchhhcc
Q 009255 529 KRRKSISKAV 538 (539)
Q Consensus 529 ~~~~~~~~A~ 538 (539)
...|++++|+
T Consensus 688 ~~lGd~~eA~ 697 (987)
T PRK09782 688 QRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHH
Confidence 6666676664
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=8.7e-22 Score=196.83 Aligned_cols=473 Identities=11% Similarity=0.019 Sum_probs=300.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 009255 22 KKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFR 101 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 101 (539)
..|++++|+..|+...+.. |-+..++..+...|...|++++|+..+++..+..+. |...+..+ .. .++.++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a~---i~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-AA---IPVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-HH---hccChhHHH
Confidence 3489999999999998886 556888889999999999999999999999887442 44444433 22 288888889
Q ss_pred HHHHHHhCCCCCChhhHHHHHHH--------HhccCCHhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHHH
Q 009255 102 LRKEMESLKLLPDVVTYNTLINR--------FFESGRSMEAFKLIDELDEHGIKPNAVTHNIM-IKWYCKEGKIDKACKI 172 (539)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~ 172 (539)
+++++.... +-+..++..+... |.+. ++|.+.++ .......|++.+.... ...|.+.|++++|+++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 999988764 3334455444444 4444 44555554 3333333344444444 7778888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCC
Q 009255 173 VRNMEENGFSPDCVTYNTLIDANCK-AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGY 251 (539)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 251 (539)
+.++.+.+ +.+......|..+|.. .++ +++..+++. ...-+......++..+.+.|+.++|.++++.+.....
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 88877764 3334445555555555 244 555555432 2223566666666666677776666666655432110
Q ss_pred c-c-----------------------------------------------------------------------------
Q 009255 252 Y-L----------------------------------------------------------------------------- 253 (539)
Q Consensus 252 ~-~----------------------------------------------------------------------------- 253 (539)
. |
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 0 0
Q ss_pred ----------------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHhhHHHHHHHHHcCCC---HHHHHHH
Q 009255 254 ----------------DEVSYGTLITGYFRDEKANRALKLWDEMKER--QIMPSTFTYNAMIWGLSQSGK---TEQAIDM 312 (539)
Q Consensus 254 ----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 312 (539)
+......+.....+.|+.++|..+++..... +..++......++..|.+.+. ...+..+
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0011111111122334444444444444331 011122233345555555444 2222222
Q ss_pred ----------------------HHHHHHC-CC-CC--CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHH
Q 009255 313 ----------------------LNELLQS-GM-IP--DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNIL 366 (539)
Q Consensus 313 ----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 366 (539)
....... +. ++ +...+..+..++.. ++.++|...+....... |+......+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 1111110 11 12 34455556555554 67778888777777653 454444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL 446 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (539)
..++...|++++|...|+++... +|+...+..++.++...|++++|...++++++.. +++...+..+...+...|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCH
Confidence 55567889999999999987654 4455556777888889999999999999998753 23333344444555667999
Q ss_pred HHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009255 447 EEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNG 526 (539)
Q Consensus 447 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 526 (539)
++|...++++++.. |+...|..++.++.+.|++++|+..|+++++ +.|+...+...++.
T Consensus 593 ~eAl~~~~~AL~l~-------------------P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~ 651 (987)
T PRK09782 593 ELALNDLTRSLNIA-------------------PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGY 651 (987)
T ss_pred HHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 99999999999887 7777999999999999999999999999997 68999988888887
Q ss_pred HHhcCCchhhcc
Q 009255 527 LIKRRKSISKAV 538 (539)
Q Consensus 527 ~~~~~~~~~~A~ 538 (539)
++...|++++|+
T Consensus 652 aL~~~G~~eeAi 663 (987)
T PRK09782 652 ALWDSGDIAQSR 663 (987)
T ss_pred HHHHCCCHHHHH
Confidence 777778888885
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=1.1e-21 Score=193.06 Aligned_cols=427 Identities=12% Similarity=0.010 Sum_probs=290.2
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 009255 48 YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE 127 (539)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (539)
+...+..+.+.|+++.|+..|++.+.. .|+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445666777888888888888887765 3456677777788888888888888888877754 3345677778888888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 009255 128 SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRM 207 (539)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (539)
.|++++|+..|..+...+...+.. ...++..+.. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 888888887776665442221211 1111111111 12222223332221 222223332222 2211111111111
Q ss_pred HHHHhhCCCCCC-HHhHHHHHHH---HhccCCHHHHHHHHHHHhhcC--CccCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 009255 208 MDVMGRKGLKMN-TITLNTILHT---LCCEKKLDEAYMLLNSASKRG--YYLDEVSYGTLITGYFRDEKANRALKLWDEM 281 (539)
Q Consensus 208 ~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (539)
+...... .+. ...+..+... ....+.+++|...|+.+...+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111111 111 0111111111 123467889999999988764 1224456777888888999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH
Q 009255 282 KERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIV 361 (539)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 361 (539)
+...+. ....|..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...|++.++.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 887543 466788888899999999999999999887643 357788888999999999999999999999874 34677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-hh-------H
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR-YT-------Y 433 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-------~ 433 (539)
.+..+..++.+.|++++|...|++..... +.++..++.++.++...|++++|+..|+++.... |+. .. +
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHH
Confidence 78888899999999999999999988763 3367788999999999999999999999988653 321 11 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
......+...|++++|.++++++++.+ |+.. .+..++.++.+.|++++|++.|+++.+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~-------------------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID-------------------PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 111222334699999999999999886 5444 7889999999999999999999999874
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.1e-22 Score=185.92 Aligned_cols=492 Identities=16% Similarity=0.117 Sum_probs=272.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---Ch
Q 009255 20 LFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAG---ML 96 (539)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 96 (539)
....+++..|+.+|..++.....--+.....+..++++.|+.+.|+..|+...+.++. ++.++..|...-.... .+
T Consensus 174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~ 252 (1018)
T KOG2002|consen 174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSY 252 (1018)
T ss_pred HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHH
Confidence 3346788888888888666542222233445567777888888888888877776432 3333333332222222 23
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 009255 97 EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIK--PNAVTHNIMIKWYCKEGKIDKACKIVR 174 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~ 174 (539)
..+...+...-... .-++...+.|...|.-.|++..+..+...+...... .-...|..+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444444332 334555666666666666666666666655443211 112345556666666666666666665
Q ss_pred HHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccC----CHHHHHHHHHHHhh
Q 009255 175 NMEENGFSPDC--VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEK----KLDEAYMLLNSASK 248 (539)
Q Consensus 175 ~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~ 248 (539)
+..+. .++. ..+.-+...+...|+++.+...|+.+.+. .+.+..+...+...|...+ ..+.|..++.+..+
T Consensus 332 ~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 55443 2222 22334555566666666666666665554 1223444444444444332 23333334333333
Q ss_pred c-------------------------------------CCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCC
Q 009255 249 R-------------------------------------GYYLDEVSYGTLITGYFRDEKANRALKLWDEMKER---QIMP 288 (539)
Q Consensus 249 ~-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 288 (539)
. +..+.+...|.+...+...|++..|...|...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 3 33344455555555555555555555555554433 1111
Q ss_pred CH------hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHh
Q 009255 289 ST------FTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVT 362 (539)
Q Consensus 289 ~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (539)
+. .+-..+...+-..++.+.|.+.|..+.+..+. -...|..++......+....|...+..+.... ..++..
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~a 566 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNA 566 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHH
Confidence 11 11122333334444555555555555543211 22233333322223345555666666555542 335555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHc------------cCChHHHHHHHHHHHhCCCCCC
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKG-KAVDSVTYNTLISSLCK------------ERRLEDAFGLLSEMEEKKLGPD 429 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~ 429 (539)
+..+...+.+...+.-|.+-|..+.+.- ..+|+.+...|+..|.. .+.+++|+++|.+.++.. +.|
T Consensus 567 rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN 645 (1018)
T KOG2002|consen 567 RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKN 645 (1018)
T ss_pred HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cch
Confidence 5556666666666666666666555441 12355555556655542 244677888888887653 455
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..+-+.++-+++..|++.+|+.+|.+..+.. .....+|.+++++|..+|+|-.|+++|+.++
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~------------------~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREAT------------------SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHH------------------hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677788888888888888888888765 2344588999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHH-HHHhcCCchhhcc
Q 009255 510 QKGIAINKSTYMNLMN-GLIKRRKSISKAV 538 (539)
Q Consensus 510 ~~~~~p~~~~~~~~l~-~~~~~~~~~~~A~ 538 (539)
+.-++.+......+|+ ++++.++ +.+|.
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~-~~eak 736 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGK-LQEAK 736 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhh-HHHHH
Confidence 7655566665555555 6666655 77764
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=7.2e-21 Score=187.24 Aligned_cols=432 Identities=13% Similarity=0.019 Sum_probs=311.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWC 91 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (539)
.+......+.+.|++++|+..|++.+.. .|++..|..+..+|.+.|++++|++.++...+.++. +...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4557788999999999999999999986 467888999999999999999999999999987543 6778889999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 009255 92 NAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACK 171 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 171 (539)
..|++++|+..|..+...+.. +......++..+.. ..+........+.. +++...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 999999999988877654311 22222222222211 22233333333321 12222232232222 2222222222
Q ss_pred HHHHHHHcCCCCCh-hhHHHHHHHH---HhcCCHHHHHHHHHHHhhCC-C-CCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 009255 172 IVRNMEENGFSPDC-VTYNTLIDAN---CKAGNMEEAFRMMDVMGRKG-L-KMNTITLNTILHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (539)
-+....+. .+.. ..+..+...+ ...+.+++|.+.|+.....+ . +.....+..+...+...|++++|+..++.
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 1111 1111121111 23478999999999998764 2 22445677778888899999999999999
Q ss_pred HhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 009255 246 ASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE 325 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (539)
+..... .....|..+...+...|++++|+..|+++...++. +..+|..+...+...|++++|...|++..+..+. +.
T Consensus 357 al~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 357 SIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 988743 24667888888999999999999999999887544 6788999999999999999999999999986533 56
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh------HH
Q 009255 326 TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVT------YN 399 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~ 399 (539)
..+..+..++.+.|++++|...++..++.. +.+...+..+..++...|++++|++.|++........+... ++
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 677788889999999999999999998863 44678899999999999999999999999988643211111 12
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+..+...|++++|..+++++.... +.+..++..++.++.+.|++++|+++++++.+..
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22223344699999999999998653 2334567889999999999999999999999876
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.93 E-value=1.4e-20 Score=188.36 Aligned_cols=431 Identities=13% Similarity=0.029 Sum_probs=290.0
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 42 VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTL 121 (539)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (539)
+.++.-..-.+......|+.++|++++....... +.+...+..+...+...|++++|..+|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455556666677778888888888888877532 2345567777788888888888888888877653 3456667777
Q ss_pred HHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 009255 122 INRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNM 201 (539)
Q Consensus 122 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (539)
+..+...|++++|+..++++.+. .+.+.. +..+..++...|+.++|...++++.+.. +.+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 77788888888888888888776 233455 7777777888888888888888887763 33445556667777777788
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCH---HHHHHHH
Q 009255 202 EEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKA---NRALKLW 278 (539)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~ 278 (539)
++|++.++.... .|+.. .. + ....+....... +.......+++ ++|++.+
T Consensus 167 e~Al~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEK--RD-L-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHH
Confidence 888877765543 22200 00 0 000000000000 00001111223 6677777
Q ss_pred HHHHHc-CCCCCHh-hHH----HHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 009255 279 DEMKER-QIMPSTF-TYN----AMIWGLSQSGKTEQAIDMLNELLQSGMI-PDETTFNTIIHGFCSEGQVEKALQFHNKM 351 (539)
Q Consensus 279 ~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (539)
+.+... ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|...|+.+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 777643 1122221 111 1123445668889999999888876532 322 2222466788889999999999888
Q ss_pred HhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---hhhHHHHHHHHHccCChHHH
Q 009255 352 VEKSFKP---DIVTCNILLSGLCREGILEKALKFFRSWILKGK-----------AVD---SVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 352 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~A 414 (539)
.+..... .......+..++...|++++|..+++.+....+ .|+ ...+..++..+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 7653211 134456666677888999999999888876521 122 12445677788899999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHh
Q 009255 415 FGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHC 493 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 493 (539)
+.+++++.... +.+...+..++.++...|++++|++.++++++.. |+. ..+...+..+.
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-------------------Pd~~~l~~~~a~~al 438 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-------------------PRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------------------CCChHHHHHHHHHHH
Confidence 99999998753 4556788888999999999999999999999987 554 48888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
..|++++|.++++++++ ..|++.....+-..+
T Consensus 439 ~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 439 DLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 99999999999999997 578888777665544
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.6e-20 Score=174.64 Aligned_cols=482 Identities=13% Similarity=0.036 Sum_probs=365.4
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLV--PNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNM 85 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (539)
.++...+.|.+.|.-.|++..+..+...+...... .-...|..+.++|..+|+++.|...|....+....-....+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 46778888999999999999999999998876411 2334688899999999999999999999988754433455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009255 86 LINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESG----RSMEAFKLIDELDEHGIKPNAVTHNIMIKWYC 161 (539)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (539)
+...+.+.|+.+.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+.
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH
Confidence 8899999999999999999998863 445667777777777664 4567777777777653 457888888888876
Q ss_pred hcCCHhHHHHHHHHHH----HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC------CCHHhHHHHHH
Q 009255 162 KEGKIDKACKIVRNME----ENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK---GLK------MNTITLNTILH 228 (539)
Q Consensus 162 ~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~ 228 (539)
...-+. ++..+.... ..+-++.+...|.+...+...|++++|...|...... ... ++..+-..+..
T Consensus 426 ~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 554443 366665543 4455677888999999999999999999999987654 112 22334455667
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHH
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQ 308 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 308 (539)
++-..++.+.|.+.|..+.+..+ .-...|..++.+....+...+|...+......+-. ++..++.+...+.....+..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcc
Confidence 77788899999999999988631 12334555554555668889999999998876443 77788888889999999999
Q ss_pred HHHHHHHHHHCC-CCCCHHhHHHHHHHHhc------------CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 009255 309 AIDMLNELLQSG-MIPDETTFNTIIHGFCS------------EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI 375 (539)
Q Consensus 309 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (539)
|.+-|+.+.+.. ..+|..+...|.+.|.. .+..++|+++|.++++.. +-|...-+.+.-+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 988777766542 22466666666665542 245788999999999885 4488888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 376 LEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL-GPDRYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
+..|..+|.+..+... -+..+|..++.+|...|+|..|+++|+...+.-. ..+..++..|++++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999998743 2667899999999999999999999999887633 4467888999999999999999999999
Q ss_pred HHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHh-------------------hcCCHHHHHHHHHHHHHcCCC
Q 009255 455 IMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHC-------------------SQGRYKDALQIFEETRQKGIA 514 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~g~~~~A~~~~~~~~~~~~~ 514 (539)
.+....+. +...-.+++-+.. ..+..+.|.++|..+...+-.
T Consensus 741 ~a~~~~p~------------------~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 741 KARHLAPS------------------NTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhCCc------------------cchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99988732 2222223322222 234578899999999875533
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2e-19 Score=176.38 Aligned_cols=445 Identities=13% Similarity=0.055 Sum_probs=278.1
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCC
Q 009255 51 LVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGR 130 (539)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 130 (539)
-+....+.|+++.|+..|+++.+..+.-....+ .++..+...|+.++|+..+++..... +........+...+...|+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 333445666666666666666655332111222 55555666666666666666665210 1111222222445556666
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 131 SMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
+++|+++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 66666666666665332 3455555566666666666666666666554 34443443333333334444446666666
Q ss_pred HhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHh-----hHHHHHHHH---H--ccC---CHHHHHHH
Q 009255 211 MGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEV-----SYGTLITGY---F--RDE---KANRALKL 277 (539)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~---~--~~~---~~~~a~~~ 277 (539)
+.+.. +.+...+..+..++.+.|-...|.++...-...-...+.. ....++..- . ... -.+.|+.-
T Consensus 195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 66653 2345555566666666666666655554332110000000 000011000 0 111 23445555
Q ss_pred HHHHHHcC-CCCCH-hhH----HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 009255 278 WDEMKERQ-IMPST-FTY----NAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKM 351 (539)
Q Consensus 278 ~~~~~~~~-~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (539)
++.+...- ..|.. ..| .-.+-++...|++.++++.++.+...+.+....+...+..+|...+++++|..+|+.+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 66655421 11221 122 1234567788999999999999998876555567788899999999999999999998
Q ss_pred HhCC-----CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCChh---hHHHHHHHHHccCChH
Q 009255 352 VEKS-----FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGK-----------AVDSV---TYNTLISSLCKERRLE 412 (539)
Q Consensus 352 ~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~---~~~~l~~~~~~~~~~~ 412 (539)
.... .+++......|..+|...+++++|..+++.+.+..+ .||+. .+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 123344457788899999999999999999987411 12222 2345677788899999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINE 491 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 491 (539)
+|.+.++++.... +-|......++..+...|.+.+|++.++.+.... |+.. +....+.+
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-------------------P~~~~~~~~~~~~ 493 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-------------------PRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-------------------CccHHHHHHHHHH
Confidence 9999999998653 6677888899999999999999999998888776 5544 88899999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 492 HCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
+...|++.+|..+.+.+++ ..|++.....+
T Consensus 494 al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 494 AMALQEWHQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred HHhhhhHHHHHHHHHHHHh--hCCCchhHHHH
Confidence 9999999999999999987 57887766554
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=7.2e-22 Score=184.95 Aligned_cols=300 Identities=13% Similarity=0.083 Sum_probs=210.6
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCcc---CHhhHHHHHHHHHccCCH
Q 009255 195 NCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYL---DEVSYGTLITGYFRDEKA 271 (539)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 271 (539)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......+ ....+..++..|...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555442 1233344455555555555555555555554432111 123456667777777778
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhcCCCHHHHHHH
Q 009255 272 NRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE----TTFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 347 (539)
++|..+|+++.+..+ ++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 888887777776532 35667777888888888888888888887765433221 2345566677888999999999
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLG 427 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 427 (539)
++++.+.. +.+...+..++..+.+.|++++|.++++++...++.....+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 99888764 33566777888889999999999999999887643333456788889999999999999999998865 5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhh---cCCHHHHHHH
Q 009255 428 PDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCS---QGRYKDALQI 504 (539)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 504 (539)
|+...+..++..+.+.|++++|.++++++++.. |+...+..+...+.. .|+.++|+.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-------------------P~~~~~~~l~~~~~~~~~~g~~~~a~~~ 340 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRH-------------------PSLRGFHRLLDYHLAEAEEGRAKESLLL 340 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------------cCHHHHHHHHHHhhhccCCccchhHHHH
Confidence 666666788888999999999999999998876 888877777766654 5689999999
Q ss_pred HHHHHHcCCCCCHH
Q 009255 505 FEETRQKGIAINKS 518 (539)
Q Consensus 505 ~~~~~~~~~~p~~~ 518 (539)
+++++++++.|+..
T Consensus 341 ~~~~~~~~~~~~p~ 354 (389)
T PRK11788 341 LRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCCCC
Confidence 99998876666543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.1e-19 Score=182.00 Aligned_cols=409 Identities=11% Similarity=0.050 Sum_probs=259.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
+.....-.+......|+.++|+.++.+..... +.+...+..+..++...|++++|.++|+...+..+. +...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 33444556677788999999999999998743 556667999999999999999999999999887543 5667788889
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 009255 89 GWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (539)
.+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+.... +...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999998863 44566 888899999999999999999999987433 56666778888888999999
Q ss_pred HHHHHHHHHHcCCCCChh------hHHHHHHHHHh-----cCCH---HHHHHHHHHHhhC-CCCCCHH-hHHHHHHHHhc
Q 009255 169 ACKIVRNMEENGFSPDCV------TYNTLIDANCK-----AGNM---EEAFRMMDVMGRK-GLKMNTI-TLNTILHTLCC 232 (539)
Q Consensus 169 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~ 232 (539)
|...++.... .|+.. ....++..... .+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a------ 239 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA------ 239 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH------
Confidence 9998887664 23310 11111111111 1112 3444444444432 1111110 00000
Q ss_pred cCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHcCCCHHHHHH
Q 009255 233 EKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIM-PSTFTYNAMIWGLSQSGKTEQAID 311 (539)
Q Consensus 233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 311 (539)
....+..+...|++++|+..|+.+...+.. |+. ....+..+|...|++++|+.
T Consensus 240 -------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 240 -------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred -------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 000012223445555555555555544321 111 11113445555555666655
Q ss_pred HHHHHHHCCCCC---CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----------CCC---HHhHHHHHHHHHhcC
Q 009255 312 MLNELLQSGMIP---DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF-----------KPD---IVTCNILLSGLCREG 374 (539)
Q Consensus 312 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 374 (539)
.|+++....... .......+..++...|++++|...++.+..... .|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 555554432111 012233344445555666666666555554321 122 224445666677778
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 009255 375 ILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFT 453 (539)
Q Consensus 375 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 453 (539)
++++|+++++++.... +.+...+..++..+...|++++|++.++++... .|+ ...+...+..+...|++++|.+.+
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888777663 335667777777777788888888888877754 344 455556666777778888888888
Q ss_pred HHHHHcC
Q 009255 454 SIMVETG 460 (539)
Q Consensus 454 ~~~~~~~ 460 (539)
+.+++..
T Consensus 451 ~~ll~~~ 457 (765)
T PRK10049 451 DDVVARE 457 (765)
T ss_pred HHHHHhC
Confidence 8887775
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.8e-21 Score=182.22 Aligned_cols=301 Identities=15% Similarity=0.114 Sum_probs=155.8
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHhccCC
Q 009255 54 GYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPD---VVTYNTLINRFFESGR 130 (539)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 130 (539)
.+...|++++|...|+++.+.++. +..++..+...+...|++++|..+++.+......++ ...+..++..|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344555555555555555554322 334455555555555555555555555554321111 1234455555555555
Q ss_pred HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCCHHHHHH
Q 009255 131 SMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPD----CVTYNTLIDANCKAGNMEEAFR 206 (539)
Q Consensus 131 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 206 (539)
+++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55555555555543 122444555555555555555555555555554321111 1123344445555566666666
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 009255 207 MMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQI 286 (539)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (539)
.++++.+.. +.+...+..+...+...|++++|.+.++++...+.......+..++..|...|++++|...++++....
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 665555432 223344445555555566666666666655544322223345555666666666666666666665542
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc---CCCHHHHHHHHHHHHhCCCCCCHH
Q 009255 287 MPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS---EGQVEKALQFHNKMVEKSFKPDIV 361 (539)
Q Consensus 287 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 361 (539)
|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++.+.+.++.|++.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33344455666666666666666666666554 3455555555544442 345666666666666544444433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=5.6e-20 Score=180.09 Aligned_cols=333 Identities=10% Similarity=0.020 Sum_probs=211.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
...++..+.+.|++++|..+++..+... +-+...+..++.+....|+++.|...++.+....+. +...+..+...+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3445666667777777777777777664 345556666666666777777777777777766443 45566666777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 009255 93 AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKI 172 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 172 (539)
.|++++|...+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 777777777777776643 334556666777777777777777777766554322 22233222 235667777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHH----HHHHHHHHhh
Q 009255 173 VRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDE----AYMLLNSASK 248 (539)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~ 248 (539)
++.+.+....++...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...++.+..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 7776654322233334444566667777777777777776653 3355566666677777777664 6677777666
Q ss_pred cCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhH
Q 009255 249 RGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTF 328 (539)
Q Consensus 249 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 328 (539)
... .+...+..+...+...|++++|+..+++.....+. +...+..+..++.+.|++++|...++++....+. +...+
T Consensus 279 l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 532 25566666777777777777777777777665433 4555666667777777777777777776664322 22233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhC
Q 009255 329 NTIIHGFCSEGQVEKALQFHNKMVEK 354 (539)
Q Consensus 329 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (539)
..+..++...|++++|...|+.+.+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33455666777777777777777665
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.5e-19 Score=177.06 Aligned_cols=363 Identities=12% Similarity=0.036 Sum_probs=288.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 009255 20 LFKKGKLNEVRDLLSDMKKQGL--VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLE 97 (539)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (539)
+.++.+++..--+|....+..- ..+..-...++..+.+.|+++.|+.+++......+. +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 4566677766666655443310 112233455677788999999999999999988655 4556666777778899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 009255 98 EAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNME 177 (539)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 177 (539)
+|...|+++.... +.+...+..+...+...|++++|...++++.... +.+...+..++..+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999999874 4567788889999999999999999999998862 3367788889999999999999999999887
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhh
Q 009255 178 ENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVS 257 (539)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (539)
... +.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.+..... .+...
T Consensus 172 ~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~ 248 (656)
T PRK15174 172 QEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAAL 248 (656)
T ss_pred HhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 653 2233333333 34788999999999999987764444455555667788899999999999999998753 36778
Q ss_pred HHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 258 YGTLITGYFRDEKANR----ALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
+..+...+...|++++ |...|+++....+. +...+..+...+...|++++|...++++....+. +......+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 8889999999999986 89999999987654 7788999999999999999999999999987543 5667777889
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGK 391 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 391 (539)
++...|++++|...++.+...+.. +...+..+..++...|++++|...|+++.+..+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999986422 334444567788999999999999999988743
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=3.4e-18 Score=167.85 Aligned_cols=434 Identities=13% Similarity=0.046 Sum_probs=319.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQGLVPNR-TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAG 94 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (539)
-+-...+.|+++.|+..|++.++.. |.++ ..+ .++..+...|+.++|+.++++..... .........+...+...|
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcC
Confidence 3344568999999999999999875 3232 344 88888889999999999999998321 123333444466888899
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 009255 95 MLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVR 174 (539)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 174 (539)
++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999999875 445677778889999999999999999999876 4455555555555545666666999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh------HHHHHHHH---h--ccCC---HHHHH
Q 009255 175 NMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTIT------LNTILHTL---C--CEKK---LDEAY 240 (539)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~a~ 240 (539)
++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+.... ....++.- . .... .+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999874 446777788889999999999998877653211 1111110 11111110 0 1112 33455
Q ss_pred HHHHHHhhcC-CccCH-h----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 009255 241 MLLNSASKRG-YYLDE-V----SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLN 314 (539)
Q Consensus 241 ~~~~~~~~~~-~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 314 (539)
.-++.+...- ..|.. . ...-.+.++...++..++++.|+.+...+.+....+-..+..+|...+++++|..+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 5555555421 11221 1 2223456677889999999999999987755455688889999999999999999999
Q ss_pred HHHHCCC-----CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-----------CCCH---HhHHHHHHHHHhcCC
Q 009255 315 ELLQSGM-----IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF-----------KPDI---VTCNILLSGLCREGI 375 (539)
Q Consensus 315 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~ 375 (539)
.+..... .++......|.-++...+++++|..+++.+.+..+ .|+. .....++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 9876532 22333356788899999999999999999987421 1222 233456777888999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 376 LEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
+.+|++.++.+....+ -|......+...+...|.+.+|.+.++.+... .|+ ..+....+.++...|++.+|.++..
T Consensus 432 l~~Ae~~le~l~~~aP-~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTAP-ANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999988744 48889999999999999999999999777744 555 5666778888999999999999999
Q ss_pred HHHHcC
Q 009255 455 IMVETG 460 (539)
Q Consensus 455 ~~~~~~ 460 (539)
.+++..
T Consensus 509 ~l~~~~ 514 (822)
T PRK14574 509 DVISRS 514 (822)
T ss_pred HHHhhC
Confidence 999987
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=9.3e-17 Score=144.63 Aligned_cols=462 Identities=12% Similarity=0.037 Sum_probs=314.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 009255 21 FKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAF 100 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 100 (539)
....+.++|+.++.+..+. +|.+...| .++++..-|+.|..+++...+. ++.+..+|......--.+|+.+...
T Consensus 387 VelE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 3445666677777777765 34344444 3445566777788888777765 3336666766666666777777777
Q ss_pred HHHHH----HHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHH
Q 009255 101 RLRKE----MESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPN--AVTHNIMIKWYCKEGKIDKACKIVR 174 (539)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 174 (539)
++..+ +...|+..+...|..=...|-..|..-.+..+.......|+... ..+|+.-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 66554 34456677777777777777777777777777777776665422 3466667777777777777777777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccC
Q 009255 175 NMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLD 254 (539)
Q Consensus 175 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (539)
..++. ++.+...|......--..|..+....+|++.... ++-....+......+-..|+...|..++..+.+.... +
T Consensus 541 ~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-s 617 (913)
T KOG0495|consen 541 HALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-S 617 (913)
T ss_pred HHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-c
Confidence 77765 2445556666666555667777777777777765 2334455555566666677777777777777766433 5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHG 334 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (539)
...+.+.+.....+.+++.|..+|.+.... .|+...|..-+......++.++|.+++++.++. ++.-...|..+.+.
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 666777777777777777777777776664 345666666666666667777777777777665 22244566667777
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
+.+.++.+.|...|..-.+. .+..+..|..+...-.+.|.+-.|..++++..-+++. +...|...++.-.+.|+.+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 77777777777777666554 3445556666666666777777777777777666443 666777777777777777777
Q ss_pred HHHHHHHHhCC-----------------------------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 009255 415 FGLLSEMEEKK-----------------------------LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQ 465 (539)
Q Consensus 415 ~~~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 465 (539)
..+..++++.- ...|..++..++..+....+++.|+++|.++++.+
T Consensus 773 ~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d----- 847 (913)
T KOG0495|consen 773 ELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD----- 847 (913)
T ss_pred HHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----
Confidence 77666655431 12345556677777888888999999999999887
Q ss_pred cccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 466 VVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
|+.. +|..+...+.+.|.-+.-.++++++.. -.|..
T Consensus 848 --------------~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 848 --------------PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTH 884 (913)
T ss_pred --------------CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCC
Confidence 6666 888888889999988888888888875 34543
No 28
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=3.4e-16 Score=135.73 Aligned_cols=450 Identities=12% Similarity=0.071 Sum_probs=330.6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHH
Q 009255 46 TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDV-VTYNTLINR 124 (539)
Q Consensus 46 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~ 124 (539)
..|.....--..++++..|..+|+..+.... .+...|...+.+-.++..+..|..++++.... .|.+ ..|-..+..
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 3344444444467788899999999987654 37778888888888999999999999998874 3443 345555555
Q ss_pred HhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 009255 125 FFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEA 204 (539)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 204 (539)
--..|++..|.++|++..+. .|+...|.+.+..-.+-..++.|..++++..-. .|+...|--....-.+.|+...+
T Consensus 151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 55678999999999998874 789999999999999999999999999998764 68888888888888899999999
Q ss_pred HHHHHHHhhC-CC-CCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCcc-CHhhHHHHHHHHHccCCHHHHHHH----
Q 009255 205 FRMMDVMGRK-GL-KMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYL-DEVSYGTLITGYFRDEKANRALKL---- 277 (539)
Q Consensus 205 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~---- 277 (539)
..+|+..... |- ..+...+......-.++..++.|.-+|.-+++.-... ....|..+...--+.|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999887653 11 1122334444444456778888888888887763221 134555555555556665444433
Q ss_pred ----HHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-hHHHHH-----HHH---hcCCCHHHH
Q 009255 278 ----WDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDET-TFNTII-----HGF---CSEGQVEKA 344 (539)
Q Consensus 278 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~-----~~~---~~~~~~~~a 344 (539)
++.++..++. |-.+|--.+......|+.+...++|+++...-++.+.. .+...+ -+| ....|.+.+
T Consensus 307 Rk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555443 77888888888888999999999999998763322221 111111 111 356899999
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 009255 345 LQFHNKMVEKSFKPDIVTCNILLSG----LCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSE 420 (539)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 420 (539)
.++|+..++. ++-...++..+--+ -.++.++..|.+++..++. ..|...+|...+..-.+.++++.+..++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999985 44444555544333 3467899999999988764 578888999999999999999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHH
Q 009255 421 MEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKD 500 (539)
Q Consensus 421 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 500 (539)
.++.+ +.+..++...+..-...|+.+.|..+|+.+++.+.. .-....|...++.-...|.++.
T Consensus 463 fle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l----------------dmpellwkaYIdFEi~~~E~ek 525 (677)
T KOG1915|consen 463 FLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPAL----------------DMPELLWKAYIDFEIEEGEFEK 525 (677)
T ss_pred HHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc----------------ccHHHHHHHhhhhhhhcchHHH
Confidence 99764 556778888888778899999999999999987633 2223389999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 501 ALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 501 A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
|..+|+++++. .+-..+|..+..
T Consensus 526 aR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 526 ARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HHHHHHHHHHh--cccchHHHhHHH
Confidence 99999999984 455556666544
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=2.5e-15 Score=135.55 Aligned_cols=487 Identities=12% Similarity=0.024 Sum_probs=385.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 009255 24 GKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLR 103 (539)
Q Consensus 24 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 103 (539)
.+...=.++++..++. +|.+...|...+ ...+.+.|+-++.+..+-= +.+...| .++.+..-++.|.+++
T Consensus 360 ~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvL 429 (913)
T KOG0495|consen 360 SDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVL 429 (913)
T ss_pred hHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHH
Confidence 3455556788888877 466666776554 3456667999999888752 2244444 4556677789999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 009255 104 KEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDEL----DEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEEN 179 (539)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 179 (539)
++..+. ++.+...|.+....--.+|+.+...+++++- ...|+..+...|..=...|-..|..-.+..+....+..
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 998775 6778889988888778899999999888764 45689999999999999999999999999999999888
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhh
Q 009255 180 GFSPD--CVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVS 257 (539)
Q Consensus 180 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 257 (539)
|+.-. ..+|..-...|.+.+.++-|..+|....+- ++-+...|......--..|..+....+++++...- +-....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~l 586 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEIL 586 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhH
Confidence 76533 458888889999999999999999988875 44466677777777778899999999999998873 335556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS 337 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (539)
|......+...|+...|..++..+.+.++. +...|-.-+........++.|..+|.+.... .|+...|..-+..-.-
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 666677778899999999999999888665 7889999999999999999999999998764 5667777777777777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHH
Q 009255 338 EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGL 417 (539)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 417 (539)
.+..++|.+++++.++. ++.-...|..+.+.+.+.++++.|...|..-... .+.....|..|...--+.|..-+|..+
T Consensus 664 ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 89999999999999986 3444668888899999999999999999887765 444667888888888899999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc------cCC------CCCCCCCCCCChhhH
Q 009255 418 LSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVV------QPN------TSKTPEEIDPSSISY 485 (539)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~------~~~~~~~~~~~~~~~ 485 (539)
+++..-.+ +.+...|...++.-.+.|+.+.|.....++++..+.+...- ... +.....+..-|+...
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 99998765 55667788889999999999999999999998775432111 000 122334445566677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC
Q 009255 486 SEKINEHCSQGRYKDALQIFEETRQKGIAINKS-TYMNLMNGLIKRR 531 (539)
Q Consensus 486 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~l~~~~~~~ 531 (539)
..++..+....+++.|++.|++..+ ..||.. +|.-+..-.+..|
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhC
Confidence 8888999999999999999999997 567764 5555555555544
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2.3e-15 Score=130.71 Aligned_cols=468 Identities=10% Similarity=0.018 Sum_probs=348.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWC 91 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (539)
.|-...+-=..++++..|..+|++.+.-. ..+...|...+.+-.+...+..|..+++.....-+..| ..|...+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHH
Confidence 34444444456778899999999999876 45777899999999999999999999999988643323 35566666666
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 009255 92 NAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACK 171 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 171 (539)
..|++..|.++|++..+ ..|+...|++.+..-.+-+.++.|..+|++.+-. .|++.+|....+.--++|.+..+..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 78999999999999887 4799999999999999999999999999999864 6899999999999999999999999
Q ss_pred HHHHHHHc-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HHhHHHHHHHHhccCCHHHHHHH-----
Q 009255 172 IVRNMEEN-GF-SPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMN--TITLNTILHTLCCEKKLDEAYML----- 242 (539)
Q Consensus 172 ~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~----- 242 (539)
+|+...+. |- ..+...+.+....-..+..++.|.-+|+-.+.. ++.+ ...+..+...--+-|+.......
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988764 10 112234455555555677889999999887765 2222 33444444444455665443332
Q ss_pred ---HHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHH--------HHHcCCCHHHHH
Q 009255 243 ---LNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPST-FTYNAMIW--------GLSQSGKTEQAI 310 (539)
Q Consensus 243 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~--------~~~~~~~~~~a~ 310 (539)
++...+.+ +.|-.+|-..+..-...|+.+...++|++.+..-++.+. ..|...|. .-....+++.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344432 346677778888888889999999999999875332111 22332222 124578999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHH----hcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 311 DMLNELLQSGMIPDETTFNTIIHGF----CSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
++++..++. ++....||..+--.| .++.+...|.+++..++.. -|...++...+..-.+.++++...+++++.
T Consensus 387 ~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999998884 444555666555444 4778999999999988854 688899999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 009255 387 ILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL-GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQ 465 (539)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 465 (539)
++-++. +-.+|...+..-...|+.+.|..+|.-+++... ......+...+.--...|.++.|..+|+++++..
T Consensus 464 le~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt----- 537 (677)
T KOG1915|consen 464 LEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT----- 537 (677)
T ss_pred HhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc-----
Confidence 998544 777899988888899999999999999986421 1112233344444457899999999999999986
Q ss_pred cccCCCCCCCCCCCCChhhHHHHHHHHh-----hcC-----------CHHHHHHHHHHHHH
Q 009255 466 VVQPNTSKTPEEIDPSSISYSEKINEHC-----SQG-----------RYKDALQIFEETRQ 510 (539)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 510 (539)
+...+|.+.+..-. +.| ....|..+|+++..
T Consensus 538 --------------~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 538 --------------QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred --------------ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 55557777666554 334 56788888888764
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=2.6e-15 Score=140.68 Aligned_cols=486 Identities=15% Similarity=0.084 Sum_probs=347.3
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
.|.....-...+.+...|++++|.+++.++++.. |.+...|.+|...|-.+|+.+.+...+-.+...++. |...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHH
Confidence 3344445555666777899999999999999986 678889999999999999999999888777766554 67899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHh
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTH----NIMIKWYCK 162 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~ 162 (539)
.....+.|+++.|.-.|.+.++.. +++...+---...|-+.|+...|.+-|.++.....+.|..-+ ...++.+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 455555556677888999999999999999887443333322 334566777
Q ss_pred cCCHhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-------------------------
Q 009255 163 EGKIDKACKIVRNMEEN-GFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGL------------------------- 216 (539)
Q Consensus 163 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------------- 216 (539)
.++-+.|.+.++..... +-..+...++.++..+.+...++.+............
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 88889999888887762 2234566788899999999999999998887765211
Q ss_pred --CCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcC--CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhh
Q 009255 217 --KMNTITLNTILHTLCCEKKLDEAYMLLNSASKRG--YYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFT 292 (539)
Q Consensus 217 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (539)
.++..+ ..+.-++......+....+...+.... +.-+...|..+..+|...|++.+|+.+|..+......-+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 122222 123334455555566666666666655 333566888999999999999999999999998766667889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh--------CCCCCCHHhHH
Q 009255 293 YNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVE--------KSFKPDIVTCN 364 (539)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~ 364 (539)
|-.+..+|...|..+.|...|+.++...+. +...-..|...+.+.|+.++|.+++..+.. ....|+..+..
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 999999999999999999999999886432 455666777888999999999999998652 23456666677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC----------------------CCCChhhHHHHHHHHHccCChHHHHHHHHHH-
Q 009255 365 ILLSGLCREGILEKALKFFRSWILKG----------------------KAVDSVTYNTLISSLCKERRLEDAFGLLSEM- 421 (539)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 421 (539)
.....+.+.|+.++-+.+-.+++... ..-..........+-.+.++.....+-...-
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 77778888999887665554444321 1112222333344444444432222211111
Q ss_pred -----HhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh--hHHHHHHHH
Q 009255 422 -----EEKKLGPDR--YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKINEH 492 (539)
Q Consensus 422 -----~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~ 492 (539)
...++..+. ..+..++.++.+.+++++|..+...+.+.....+ ++... .-.....+.
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~--------------~~~~~k~l~~~~l~~s 676 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQ--------------DSEIRKELQFLGLKAS 676 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhc--------------cHHHHHHHHHHHHHHH
Confidence 111333332 3455677788999999999999999988764310 12211 223344556
Q ss_pred hhcCCHHHHHHHHHHHHHc
Q 009255 493 CSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~~ 511 (539)
+..+++..|...++.++..
T Consensus 677 ~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 677 LYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 6789999999999998863
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-17 Score=144.01 Aligned_cols=459 Identities=12% Similarity=0.042 Sum_probs=215.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHccCCHhHHHHHHHHHHhCCCCC----ChhhHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTY-NILVSGYCKLGWLKEAMRVVDLMTQNKSLP----DVWTYNML 86 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l 86 (539)
.+..|.+.|..+..+.+|+..|+-+.+...-|+.... ..+...+.+...+..|++.++..+..-+.. .+.+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444556666666777777777777666555555533 345566667777777777777666542211 12334444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHH--------HHHHH
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTH--------NIMIK 158 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~ 158 (539)
...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|...-..||..-| ..|+.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 45566777777777777776664 366655555555566667777777777777654222222111 11111
Q ss_pred HHHhcCC-----------HhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009255 159 WYCKEGK-----------IDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTIL 227 (539)
Q Consensus 159 ~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (539)
-..+... .++++-.--++..--+.|+-.. | .+-.++.++.-....+. ...-..-.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-----------g-~dwcle~lk~s~~~~la--~dlei~ka 426 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-----------G-CDWCLESLKASQHAELA--IDLEINKA 426 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc-----------c-cHHHHHHHHHhhhhhhh--hhhhhhHH
Confidence 1111111 1111111111111111111100 0 01111111110000000 00000111
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHH--ccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCC
Q 009255 228 HTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYF--RDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGK 305 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 305 (539)
..+.+.|+++.|.+++.-+.+.........-+.|-..+. .-.++..|...-+..+..+.- ++.....-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 234455666666666555554432221112222211111 123344444444443332110 11111111122233566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 306 TEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRS 385 (539)
Q Consensus 306 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 385 (539)
+++|.+.+++.+...-. -...+-.+...+...|+.++|++.|-++... +..+..++..+...|....+...|++++.+
T Consensus 506 ~dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred HHHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 66666666665543211 1111222223344556666666666555432 223555555666666666666666666655
Q ss_pred HHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 009255 386 WILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQ 465 (539)
Q Consensus 386 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 465 (539)
.... ++.|+.+...|...|-+.|+-..|.+.+-+--+. ++-+..+...|+.-|....-+++++.+|+++.-..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliq----- 656 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ----- 656 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-----
Confidence 5544 3445556666666666666666666654443322 34455555555555555555666666666655442
Q ss_pred cccCCCCCCCCCCCCChhhHHHHHH-HHhhcCCHHHHHHHHHHHHH
Q 009255 466 VVQPNTSKTPEEIDPSSISYSEKIN-EHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 510 (539)
|+..-|..++. ++.+.|++++|..+|+....
T Consensus 657 --------------p~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 657 --------------PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred --------------ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66665554333 33445666666666666554
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=4.3e-17 Score=140.58 Aligned_cols=428 Identities=13% Similarity=0.062 Sum_probs=289.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHHhccCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 009255 86 LINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYN-TLINRFFESGRSMEAFKLIDELDEHGIKPNA----VTHNIMIKWY 160 (539)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 160 (539)
|..-|.......+|+..++-+.+...-|+.-... .+...+.+..++.+|+++|+..+..-...+- ...+.+...+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4444555667788888888888877777765432 3557788888899999998887765332232 3344455567
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------CCHHhHHHHH-
Q 009255 161 CKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLK------------MNTITLNTIL- 227 (539)
Q Consensus 161 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~- 227 (539)
.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+...++..+
T Consensus 287 iq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred EecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7889999999999988776 578776666777777888889999999888654322 2222222222
Q ss_pred ----HHHhccC--CHHHHHHHHHHHhhcCCccCHh-------------hHH--------HHHHHHHccCCHHHHHHHHHH
Q 009255 228 ----HTLCCEK--KLDEAYMLLNSASKRGYYLDEV-------------SYG--------TLITGYFRDEKANRALKLWDE 280 (539)
Q Consensus 228 ----~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~~~~ 280 (539)
.-..+.+ +.+.++..-.+++..-+.|+-. .+. .-..-|.++|+++.|++++.-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 1111111 1122222222222211111100 011 112346788999999999988
Q ss_pred HHHcCCCCCHhhHHHHHHH-HHc-CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 009255 281 MKERQIMPSTFTYNAMIWG-LSQ-SGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP 358 (539)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (539)
+.+.+-..-...-+.|-.. |.+ -.++..|..+-+..+... .-+......-.......|++++|.+.|++.+.....
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas- 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS- 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-
Confidence 7766333222222222222 222 345667777666655432 223333333334445679999999999999876422
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
-...+..+.-.+...|++++|+..|-++... ...+..+...+...|....+...|++++.+.... ++.|+.++..|+.
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 2233334455678899999999999877654 3347778888999999999999999999988754 5667888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
.|-+.|+..+|.+++-..-+-. |.+..+...|+..|....-+++|+..|+++.= +.|+..
T Consensus 601 lydqegdksqafq~~ydsyryf------------------p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYF------------------PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred Hhhcccchhhhhhhhhhccccc------------------CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 9999999999999876665554 45666888888899999999999999999863 789999
Q ss_pred HHHHHHHHHHhcCCchhhccC
Q 009255 519 TYMNLMNGLIKRRKSISKAVD 539 (539)
Q Consensus 519 ~~~~~l~~~~~~~~~~~~A~~ 539 (539)
-|..++.+|+++.|++++|+|
T Consensus 661 kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999975
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.84 E-value=1.7e-15 Score=129.82 Aligned_cols=409 Identities=18% Similarity=0.154 Sum_probs=283.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CCHhHH-HHHHHHHHhCC-----------
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKL--GWLKEA-MRVVDLMTQNK----------- 75 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a-~~~~~~~~~~~----------- 75 (539)
+++=|.|++. ..+|.+.++.-+|+.|...|++.++..-..|++..+.. .++--| .+.|-.|...|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 57889999999999999999999888877776654422 221111 11121221111
Q ss_pred --------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCC
Q 009255 76 --------SLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIK 147 (539)
Q Consensus 76 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 147 (539)
.+-+..++..+|.++++--..+.|..++++......+.+..+||.+|.+-.-. ...+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 12256789999999999999999999999998887788999999998765433 237899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHhH----HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHhh----CCC--
Q 009255 148 PNAVTHNIMIKWYCKEGKIDK----ACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEE-AFRMMDVMGR----KGL-- 216 (539)
Q Consensus 148 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~-- 216 (539)
||..|||.++++..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+ +..++.++.. ..+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 45788899999999999999999999998888754 4444444432 112
Q ss_pred --CCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcC----CccC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 009255 217 --KMNTITLNTILHTLCCEKKLDEAYMLLNSASKRG----YYLD---EVSYGTLITGYFRDEKANRALKLWDEMKERQIM 287 (539)
Q Consensus 217 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 287 (539)
+.+...+...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....++....+.....|+.+...-..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2244566777888888999999988876665432 1111 123556677778888899999999999988778
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC-CH--------H-----HHHHHH-----
Q 009255 288 PSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG-QV--------E-----KALQFH----- 348 (539)
Q Consensus 288 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~----- 348 (539)
|+..+...++++..-.|.++-.-+++.+++..|..-+......++..+++.+ .. . -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999998889999999899888887664433333333333333332 10 0 011111
Q ss_pred --HHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHH---HHHHHHHccCChHHHHHHHHHHH
Q 009255 349 --NKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKG-KAVDSVTYN---TLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 349 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
.++.+. .......+.++-.+.+.|..++|.+++..+...+ ..|-....+ .++......++...|+..++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 112222 2344556666667778888888888887775543 233344444 44555566677777888777776
Q ss_pred hCC
Q 009255 423 EKK 425 (539)
Q Consensus 423 ~~~ 425 (539)
..+
T Consensus 589 ~~n 591 (625)
T KOG4422|consen 589 AFN 591 (625)
T ss_pred HcC
Confidence 554
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.9e-15 Score=134.16 Aligned_cols=487 Identities=12% Similarity=0.032 Sum_probs=334.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
+..-+..+.+-+..+.++..|.-+-+++...+ .++....-+++++.-.|++++|..++..-.-. ..+..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 45567777777888889999999999988765 56666777889999999999998887765332 347777777888
Q ss_pred HHHhcCChHHHHHHHHHH----HhCC---------CCCChhh----HHHH-------HHHHhccCCHhHHHHHHHHHHhC
Q 009255 89 GWCNAGMLEEAFRLRKEM----ESLK---------LLPDVVT----YNTL-------INRFFESGRSMEAFKLIDELDEH 144 (539)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~----~~~~---------~~~~~~~----~~~l-------~~~~~~~~~~~~a~~~~~~~~~~ 144 (539)
++.+..+++.|..++... .... +.+|..- -+.- ...|....+.++|...|.+....
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~ 170 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA 170 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence 888999999999888732 1100 0111110 0111 12333445566666666666544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 009255 145 GIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFS----PDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNT 220 (539)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 220 (539)
|+..+..+...-. . ..-.+.+.++.+...... -+......+.........-+.....-.+..-.+..-+.
T Consensus 171 ----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~ 244 (611)
T KOG1173|consen 171 ----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL 244 (611)
T ss_pred ----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence 4443333222111 0 111122222222211000 01111111111110000000000001101111234466
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGL 300 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (539)
.....-..-+...+++.+..++.+.+.+.. ++....+-.-|.++...|+..+-..+=.++...-+. .+.+|-++.--|
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY 322 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence 667777778888999999999999998874 335566666677888899988888888888887544 678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 009255 301 SQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKAL 380 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 380 (539)
...|+.++|.++|.+...-... -...|......++..|.-++|+..|..+.+.- +....-+.-+..-|.+.++++-|.
T Consensus 323 l~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 9999999999999987764322 34578888899999999999999999887752 212222333455588899999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 381 KFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK--KLGP----DRYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
++|.++... .+.|+...+.++......+.+.+|..+|+..+.. .+.+ -..++..|+.++.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999999887 3458889999998888999999999999988732 1111 24568899999999999999999999
Q ss_pred HHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009255 455 IMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKR 530 (539)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 530 (539)
+++... +.+..++.+++-+|...|+++.|++.|.+.+. ++||+.....+|+.++..
T Consensus 480 ~aL~l~------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 480 KALLLS------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHcC------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999987 55666999999999999999999999999995 899999999998877654
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2e-14 Score=124.67 Aligned_cols=389 Identities=15% Similarity=0.069 Sum_probs=278.1
Q ss_pred CCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH--H
Q 009255 112 LPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTY--N 189 (539)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~ 189 (539)
..|...+-...-.+.+.|....|++.|...... .+-.-..|.-|... ..+.+. ...+.. +.+.+...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHHHH
Confidence 334444444445556677788888888777654 22233333333322 222222 222221 112222211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCc--cCHhhHHHHHHHHHc
Q 009255 190 TLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYY--LDEVSYGTLITGYFR 267 (539)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 267 (539)
.+..++....+.+++.+-.+.+...|.+.+...-+....+.....++++|+.+|+.+.+..+. -|..+|+.++-. +
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--K 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--H
Confidence 234555566678888888888888888877777777777888889999999999999887421 134456555433 2
Q ss_pred cCCHHHHHHHHHH-HHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHH
Q 009255 268 DEKANRALKLWDE-MKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQ 346 (539)
Q Consensus 268 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (539)
..+.. +..+.+ ....+ +-.+.|...+.+-|.-.+++++|..+|++.++.++. ....|+.+.+-|...++...|.+
T Consensus 310 ~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 22111 112211 11111 124567777888899999999999999999987544 56688889999999999999999
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 009255 347 FHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 426 (539)
.|+.+++.. +.|...|..+.++|.-.+.+.-|+-+|++.... .+.|+..|..|+.+|.+.++.++|++.|+++...|
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 999999986 458999999999999999999999999999987 34488999999999999999999999999999875
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHH
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIF 505 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 505 (539)
..+...+..+++.+.+.++.++|.+.+++.++..... -.+.|... +..-|+.-+.+.+++++|-...
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e------------g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE------------GEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh------------cccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 4567889999999999999999999999988743100 00124333 5556888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009255 506 EETRQKGIAINKSTYMNLMNGLIKRRK 532 (539)
Q Consensus 506 ~~~~~~~~~p~~~~~~~~l~~~~~~~~ 532 (539)
.++.. | .+.-....++++.+.+...
T Consensus 531 ~~~~~-~-~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 531 TLVLK-G-ETECEEAKALLREIRKIQA 555 (559)
T ss_pred HHHhc-C-CchHHHHHHHHHHHHHhcC
Confidence 98886 3 7777888888888876544
No 37
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=4.1e-14 Score=132.85 Aligned_cols=341 Identities=13% Similarity=0.109 Sum_probs=247.3
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+.+...|..|...|-..|+.+++...+-..-..+ |.|...|..+.....++|.+++|.-+|.++++.++. +...+-.-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~er 247 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYER 247 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 4567789999999999999999988877766664 557789999999999999999999999999998654 55555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhH----HHHHHHHhccCCHhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLPDVVTY----NTLINRFFESGRSMEAFKLIDELDEHG-IKPNAVTHNIMIKWYC 161 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 161 (539)
+..|-+.|+...|...|.++.....+.|..-+ ...++.+...++-+.|.+.++.....+ -.-+...++.++..+.
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l 327 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFL 327 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHH
Confidence 78888999999999999999886422222222 234566667777799999988887632 2235567788899999
Q ss_pred hcCCHhHHHHHHHHHHHcC---------------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 162 KEGKIDKACKIVRNMEENG---------------------------FSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 162 ~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
+...++.+........... ..++..+. .++-++......+....+...+...
T Consensus 328 ~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 328 KNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh
Confidence 9999999988877766511 11222221 1222223333333333334444444
Q ss_pred C--CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhh
Q 009255 215 G--LKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFT 292 (539)
Q Consensus 215 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (539)
. +.-+...+..+..++...|++.+|..++..+......-+..+|..+..+|...|..+.|.+.|+.++...+. +...
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~ 485 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDA 485 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhh
Confidence 4 444567788899999999999999999999998866667788999999999999999999999999887543 5666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH--------CCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHH
Q 009255 293 YNAMIWGLSQSGKTEQAIDMLNELLQ--------SGMIPDETTFNTIIHGFCSEGQVEKALQFHNKM 351 (539)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 351 (539)
-..|...+.+.|++++|.+.++.+.. .+..|...........+...|+.++-..+...+
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67788889999999999999988542 223344444444555666777766644444443
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.4e-14 Score=124.40 Aligned_cols=358 Identities=14% Similarity=0.182 Sum_probs=170.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
+..+|..+|.++++--..+.|.+++.+........+..+||.+|.+-....+ .++..+|.+....||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4445555555555555555555555555554445555555555544332222 445555555555555555555555
Q ss_pred HHHhcCChHH----HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhH-HHHHHHHHHh----CCCC----CCHHHHHH
Q 009255 89 GWCNAGMLEE----AFRLRKEMESLKLLPDVVTYNTLINRFFESGRSME-AFKLIDELDE----HGIK----PNAVTHNI 155 (539)
Q Consensus 89 ~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~ 155 (539)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ +..++.++.. ..++ .|...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555554432 23444555555555555555555555555444422 2222222221 1111 12333444
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC----CCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 009255 156 MIKWYCKEGKIDKACKIVRNMEENG----FSPDC---VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILH 228 (539)
Q Consensus 156 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 228 (539)
.+..|.+..+.+-|.++..-+.... +.|+. .-|..+....+.....+.....|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 4444555555555544443332110 11221 1223333444444445555555555554444455555555555
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHh---hHHHHHHHHHcCCC
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTF---TYNAMIWGLSQSGK 305 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 305 (539)
+....+.++-..+++..+...|...... --++++..+....+.|+.. -+.....-++. +
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~----------------l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSD----------------LREEILMLLARDKLHPLTPEREQLQVAFAKCAA--D 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHH----------------HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--H
Confidence 5555555555555544444433211111 1112222222222222211 11111111100 1
Q ss_pred HHH-HHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC----CCCCHHhHHHHHHHHHhcCCHHHHH
Q 009255 306 TEQ-AIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS----FKPDIVTCNILLSGLCREGILEKAL 380 (539)
Q Consensus 306 ~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~ 380 (539)
+.+ ....-.++.+. .......+.++-.+.+.|..++|.+++..+.+.+ ..|.......++..-...++...|.
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 111 11111223333 3345567777778889999999999999986553 2344445556777777788899999
Q ss_pred HHHHHHHHcC
Q 009255 381 KFFRSWILKG 390 (539)
Q Consensus 381 ~~~~~~~~~~ 390 (539)
.+++-+...+
T Consensus 582 ~~lQ~a~~~n 591 (625)
T KOG4422|consen 582 EVLQLASAFN 591 (625)
T ss_pred HHHHHHHHcC
Confidence 9998887653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.3e-14 Score=122.61 Aligned_cols=359 Identities=13% Similarity=0.084 Sum_probs=263.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 009255 145 GIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLN 224 (539)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 224 (539)
+...|...+-.....+.+.|....|++.|...... .|..-..|..|.... .+.+. ...+.. +.+.+...+.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence 34446655556666777888999999999887754 133333444443332 22222 222222 2222222222
Q ss_pred --HHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHHHH
Q 009255 225 --TILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIM--PSTFTYNAMIWGL 300 (539)
Q Consensus 225 --~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 300 (539)
.+..++......+++..-.+.....|++.+...-+....+.....+++.|+.+|+++.+.++- .|..+|+.++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 334555566688888888888888888877777777777788899999999999999987442 2566777665443
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 009255 301 SQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKAL 380 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 380 (539)
.. + ..+.++-+-.-.--+-.+.|...+.+.|.-.++.++|..+|++.++.+. .....|+.+.+-|....+...|+
T Consensus 310 ~~--~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 310 ND--K--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred hh--h--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence 22 1 1222222222111123456788888999999999999999999999863 36778888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 381 KFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.-++++++..+. |...|-.|+++|.-.+.+.=|+-.|+++.... +.|...|..++.+|.+.++.++|+++|..++..+
T Consensus 385 ~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 999999998544 88899999999999999999999999999753 5567889999999999999999999999999987
Q ss_pred CCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCCchh
Q 009255 461 KINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQK----G-IAINKSTYMNLMNGLIKRRKSIS 535 (539)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~~l~~~~~~~~~~~ 535 (539)
+.+..++..|++.|-+.++.++|.+.|++.++. | ..|...-....|..++..-++++
T Consensus 463 ------------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~ 524 (559)
T KOG1155|consen 463 ------------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD 524 (559)
T ss_pred ------------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence 456679999999999999999999999998762 3 33434455667888888888888
Q ss_pred hc
Q 009255 536 KA 537 (539)
Q Consensus 536 ~A 537 (539)
+|
T Consensus 525 ~A 526 (559)
T KOG1155|consen 525 EA 526 (559)
T ss_pred HH
Confidence 87
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2e-14 Score=125.52 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=180.8
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHH
Q 009255 264 GYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEK 343 (539)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 343 (539)
.+.-.|+...+..-|+..+...+.++ ..|-.+..+|...++.++.+..|.+..+.++. ++.+|..-.+...-.++++.
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 34557888999999999988765533 33777788899999999999999999887654 67788888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 009255 344 ALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEE 423 (539)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 423 (539)
|..-|++.+... +.+...|-.+..+..+.+.++++...|++...+ ++..+..|+....++..++++++|.+.|+.+++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999999875 336667777777777889999999999999887 566888999999999999999999999999986
Q ss_pred CCCCCC-------HhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHh
Q 009255 424 KKLGPD-------RYTY--AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHC 493 (539)
Q Consensus 424 ~~~~~~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 493 (539)
. .|+ ...+ ..++-.-. .+++..|.++++++++.+ |... ++..++....
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-------------------pkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-------------------PKCEQAYETLAQFEL 548 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-------------------chHHHHHHHHHHHHH
Confidence 4 343 2111 12222222 389999999999999998 5554 9999999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
++|+.++|+++|++...
T Consensus 549 Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999875
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=1e-14 Score=134.92 Aligned_cols=283 Identities=11% Similarity=0.064 Sum_probs=177.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHh-HHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHH--HHHHHHHccCCHHHH
Q 009255 198 AGNMEEAFRMMDVMGRKGLKMNTIT-LNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYG--TLITGYFRDEKANRA 274 (539)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 274 (539)
.|++++|.+.+....+... ++.. +........+.|+.+.+...+.++.+.. |+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 4555555555554333211 1122 2222333345566666666666555432 2221111 224455666666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-------hHHHHHHHHhcCCCHHHHHHH
Q 009255 275 LKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDET-------TFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 347 (539)
...++++.+..+. ++.....+...|.+.|++++|..++..+.+.+..++.. .|..++.......+.+....+
T Consensus 173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666666665443 55666666667777777777777777766654432211 222223333334455556666
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLG 427 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 427 (539)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|++... ++.+....++.+++++..++..+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6665443 2457778888888888889999999888888774 4444322 2334445688888888888888652 4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 428 PDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
-|......+++.|.+.|++++|.+.|+++++.. |+...+..++.++.+.|+.++|.++|++
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-------------------P~~~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-------------------PDAYDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 445667788888888999999999999988876 8888888888889999999999988888
Q ss_pred HHH
Q 009255 508 TRQ 510 (539)
Q Consensus 508 ~~~ 510 (539)
.+.
T Consensus 387 ~l~ 389 (398)
T PRK10747 387 GLM 389 (398)
T ss_pred HHh
Confidence 765
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=1.4e-14 Score=134.95 Aligned_cols=290 Identities=11% Similarity=0.020 Sum_probs=187.3
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHH
Q 009255 197 KAGNMEEAFRMMDVMGRKGLKMN-TITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRAL 275 (539)
Q Consensus 197 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (539)
..|+++.|.+.+.+..+.. |+ ...+.....+....|+.+.+...+..+.+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4667777777766655542 22 22333445556666777777777766655432211123333466667777788888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHH-HHHHHH---hcCCCHHHHHHHHHHH
Q 009255 276 KLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFN-TIIHGF---CSEGQVEKALQFHNKM 351 (539)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~~ 351 (539)
..++.+.+..+. ++..+..+...+.+.|+++.|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 777777776544 5667777777888888888888888887776543 222221 111111 2222223333344444
Q ss_pred HhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 009255 352 VEKSF---KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVT-YNTLISSLCKERRLEDAFGLLSEMEEKKLG 427 (539)
Q Consensus 352 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 427 (539)
.+... +.+...+..++..+...|+.++|.+++++..+..+.+.... ...........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 44321 23778888888899999999999999999888633221111 1222222344578888899888888652 3
Q ss_pred CCH--hhHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 009255 428 PDR--YTYAAIHTALVESGRLEEAQKFTSI--MVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQ 503 (539)
Q Consensus 428 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 503 (539)
-|. .....+++.+.+.|++++|.+.|++ +.+.. |+...+..++..+.+.|+.++|.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-------------------p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-------------------LDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-------------------CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 334 5667899999999999999999994 55554 888878899999999999999999
Q ss_pred HHHHHHH
Q 009255 504 IFEETRQ 510 (539)
Q Consensus 504 ~~~~~~~ 510 (539)
+|++.+.
T Consensus 392 ~~~~~l~ 398 (409)
T TIGR00540 392 MRQDSLG 398 (409)
T ss_pred HHHHHHH
Confidence 9998764
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.3e-17 Score=147.49 Aligned_cols=262 Identities=16% Similarity=0.153 Sum_probs=105.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcC-CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcC
Q 009255 225 TILHTLCCEKKLDEAYMLLNSASKRG-YYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQS 303 (539)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (539)
.+...+...|++++|.+++....... .+.++..+..+.......++.+.|+..++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 33555556666666666664433332 2234444555555566667777777777777665433 45556666666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 009255 304 GKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS-FKPDIVTCNILLSGLCREGILEKALKF 382 (539)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (539)
+++++|.+++....+.. +++..+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765542 455666777778888888888888888876532 345677788888888889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 383 FRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
+++.++..+. |+.....++..+...|+.+++..+++...+.. +.|...+..++.++...|+.++|..+++++.+..
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence 9988887332 57778888888888888888888888877653 4455666788888888899999999999988876
Q ss_pred CcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 463 NHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.|+.....+++++...|+.++|.++++++.+
T Consensus 245 ----------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 ----------------PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ----------------TT-HHHHHHHHHHHT-----------------
T ss_pred ----------------cccccccccccccccccccccccccccccccc
Confidence 34555778889999999999999988888764
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=1.9e-17 Score=146.54 Aligned_cols=254 Identities=15% Similarity=0.159 Sum_probs=115.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcC
Q 009255 260 TLITGYFRDEKANRALKLWDEMKERQ-IMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSE 338 (539)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (539)
.+...+.+.|++++|++++.+..... .+.+...|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55778889999999999997655443 3346667777777888899999999999999887544 56677777776 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHH
Q 009255 339 GQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKG-KAVDSVTYNTLISSLCKERRLEDAFGL 417 (539)
Q Consensus 339 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 417 (539)
+++++|..++....+.. ++...+...+..+...++++++..+++.+.... .++++..|..++..+.+.|++++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877653 566777888889999999999999999987542 245777889999999999999999999
Q ss_pred HHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcC
Q 009255 418 LSEMEEKKLGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQG 496 (539)
Q Consensus 418 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 496 (539)
++++++. .| |......++..+...|+.+++.++++...+.. +.++..|..++.+|...|
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------------------~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA------------------PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------------------cCHHHHHHHHHHHhcccc
Confidence 9999975 45 46778889999999999999999999998876 355568889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhccC
Q 009255 497 RYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAVD 539 (539)
Q Consensus 497 ~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 539 (539)
++++|+..|++..+ ..|+++.+...++..+...|+.++|++
T Consensus 229 ~~~~Al~~~~~~~~--~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 229 RYEEALEYLEKALK--LNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp -HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHT----------
T ss_pred cccccccccccccc--ccccccccccccccccccccccccccc
Confidence 99999999999997 579999888888888888888998863
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.3e-14 Score=121.71 Aligned_cols=414 Identities=12% Similarity=0.073 Sum_probs=257.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPN-RTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
.+-...+-|.++|++++|++.|.+.++. .|+ +.-|.....+|...|+++.+.+--...++.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 3555677888999999999999999986 456 777888888999999999998888888876433 344555556667
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHH--------HHHHHh-CC--CCCCHHHHHHHHHH
Q 009255 91 CNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKL--------IDELDE-HG--IKPNAVTHNIMIKW 159 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~-~~--~~~~~~~~~~l~~~ 159 (539)
-..|++++|+.=..- .++...+....-..-+.++ ..+-.+ .+ +-|++....+....
T Consensus 194 E~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HhhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 777777777532221 1122222111111112222 222222 11 22444333333332
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH----HHh-cCCHHHHHHHHHHHhhC---CCC---CC------HHh
Q 009255 160 YCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDA----NCK-AGNMEEAFRMMDVMGRK---GLK---MN------TIT 222 (539)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~-~~~~~~a~~~~~~~~~~---~~~---~~------~~~ 222 (539)
+... +. ..+. .+.......+..+ +.. ...+.+|.+.+.+-... ... .| ..+
T Consensus 261 F~~~--~~------~~~~----~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~a 328 (606)
T KOG0547|consen 261 FHAD--PK------PLFD----NKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEA 328 (606)
T ss_pred cccc--cc------cccc----CCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHH
Confidence 2110 00 0000 0000011111111 100 01233333333322110 000 11 122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 009255 223 LNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ 302 (539)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (539)
+......+.-.|+.-.+..-|+.+++.... +...|-.+...|...++.++....|......++. ++.+|.-=.+.+.-
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 222233344568888888888888887544 3334777778888999999999999998887765 67777777777777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 009255 303 SGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKF 382 (539)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 382 (539)
.+++++|..=|++.+...+. +...|..+.-+..+.+.++.++..|++.++. ++.-++.|+.....+..+++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 88899999999988875432 4445555555666888999999999999886 566788999999999999999999999
Q ss_pred HHHHHHcCCC-------CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 009255 383 FRSWILKGKA-------VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTS 454 (539)
Q Consensus 383 ~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 454 (539)
|+..++.... +.+.+...++..- -.+++..|..++.++.+. .|. ...+..++..-.+.|+.++|+++|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9988875222 1111222222222 348899999999999865 444 4678889999999999999999999
Q ss_pred HHHHcC
Q 009255 455 IMVETG 460 (539)
Q Consensus 455 ~~~~~~ 460 (539)
+....-
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 987654
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=5.5e-14 Score=130.13 Aligned_cols=222 Identities=13% Similarity=0.030 Sum_probs=135.4
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHHHHH
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPST-------FTYNAMIWGLS 301 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~ 301 (539)
.+...|+++.|...++.+.+... -++.....+...|.+.|++++|.+++..+.+....++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444331 13344444444444445555555555444443332111 11222222222
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 009255 302 QSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALK 381 (539)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 381 (539)
...+.+...++++.+.+. .+.++.....+...+...|+.++|...+++..+. +++..... +.+....++.+++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHH
Confidence 333445555555554332 2346667777788888888888888888888774 34443222 222334588888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 382 FFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
..+...+..+ -|+..+..++..+...+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+..
T Consensus 316 ~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 316 VLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888887633 36667788888888888888888888888854 688888888888888888888888888887664
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.4e-14 Score=130.52 Aligned_cols=134 Identities=13% Similarity=-0.013 Sum_probs=93.5
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCh--hhHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSG--LCREGILEKALKFFRSWILKGKAVDS--VTYN 399 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 399 (539)
+...+..+...+...|+.++|...+++..+.........+. ++.. ....++.+.+.+.+++..+.. +-|+ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHH
Confidence 56666777777778888888888888777753221111111 1221 233467788888888877763 2245 5667
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.+++.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+..
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888999999999999985443345788888888888999999999999999887654
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3.4e-15 Score=135.51 Aligned_cols=273 Identities=17% Similarity=0.201 Sum_probs=155.9
Q ss_pred CHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHcCCCHHHHHHH
Q 009255 235 KLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQI--MPSTFTYNAMIWGLSQSGKTEQAIDM 312 (539)
Q Consensus 235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (539)
+..+|...|..+...- .-+..+...+..+|...+++++|.++|+.+....+ ..+..+|++.+..+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3455666666644332 22334555566667777777777777766655422 1244555555544322 222222
Q ss_pred HHH-HHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 313 LNE-LLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGK 391 (539)
Q Consensus 313 ~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 391 (539)
+.+ +... -+..+.+|..+..+|.-+++.+.|++.|+++++.+ +....+|+.+..=+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 222 2222 23355666666666666677777777776666653 11455666666656666666666666666654422
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCC
Q 009255 392 AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPN 470 (539)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 470 (539)
+ +...|..++..|.++++++.|.-.|+++.+- .|. ......++..+-+.|+.++|+++++++...+
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld---------- 553 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD---------- 553 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC----------
Confidence 1 3334445566666667777777777666643 343 3344455666666667777777777766665
Q ss_pred CCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhc
Q 009255 471 TSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKA 537 (539)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 537 (539)
+.++..-...+..+...+++++|++.++++.+ +.|++.+...+++..++.-|+...|
T Consensus 554 --------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 554 --------PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred --------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHH
Confidence 33444555556666666777777777776665 5666666666666666655555555
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=6.5e-15 Score=133.71 Aligned_cols=287 Identities=14% Similarity=0.048 Sum_probs=226.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCC--ccCHhhHHHHHHHHHccCCHHHHHHH
Q 009255 200 NMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGY--YLDEVSYGTLITGYFRDEKANRALKL 277 (539)
Q Consensus 200 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (539)
+..+|+..|..+... +.-+..+...+..+|...++++++.++|+.+.+... .-+...|...+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467888888885444 444567788899999999999999999999987631 1244566665543322 222333
Q ss_pred H-HHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 009255 278 W-DEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF 356 (539)
Q Consensus 278 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (539)
+ +.+..... -.+.+|.++..+|.-+++++.|++.|+++.+..+. ...+|+.+..-+....++|+|...|+..+....
T Consensus 409 Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 33344333 37899999999999999999999999999886432 667888888888999999999999999987642
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
+ +..+|..+...|.+.++++.|+-.|+++++.++. +......++..+.+.|+.++|+++++++.... +.|.-.-..-
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 5567778899999999999999999999987544 77788888999999999999999999999664 3344455566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAI 515 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 515 (539)
+..+...+++++|.+.++++.+.- |+.. .+..++..|.+.|+.+.|+.-|--+.+ +.|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-------------------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-------------------PQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-------------------cchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCC
Confidence 777888999999999999999986 6655 899999999999999999999999987 444
Q ss_pred CH
Q 009255 516 NK 517 (539)
Q Consensus 516 ~~ 517 (539)
..
T Consensus 623 kg 624 (638)
T KOG1126|consen 623 KG 624 (638)
T ss_pred cc
Confidence 43
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=4.3e-13 Score=114.66 Aligned_cols=292 Identities=12% Similarity=0.063 Sum_probs=179.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHH
Q 009255 198 AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKL 277 (539)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 277 (539)
.|+|.+|++.+.+-.+.+..| ...|....++.-+.|+.+.+-.++.++.+....++....-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455555555555444433221 2223333444445555555555555555443233334444444555555555555555
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHhcCCCHHHHHHHHHH
Q 009255 278 WDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE-------TTFNTIIHGFCSEGQVEKALQFHNK 350 (539)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (539)
..++.+.++. .+........+|.+.|++.....++..+.+.+.-.+. .++..+++-+...+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555554443 4455555556666666666666666666655544332 2455555555555555555556666
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 009255 351 MVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR 430 (539)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 430 (539)
.-.. .+.++.....++.-+.++|+.++|.++..+..+.+..|+ .. ..-.+.+-++...-++..++.... .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 5543 344667777777788888888888888888887766554 12 222345667777777777766654 24445
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..+..++..|.+.+.|.+|.+.++.+++.. |+...|..++++|.+.|++.+|.+..++.+-
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-------------------~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR-------------------PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-------------------CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 677788888888888888888888888875 8888888888888888888888888888774
Q ss_pred cCCCCC
Q 009255 511 KGIAIN 516 (539)
Q Consensus 511 ~~~~p~ 516 (539)
.-..|+
T Consensus 390 ~~~~~~ 395 (400)
T COG3071 390 LTRQPN 395 (400)
T ss_pred HhcCCC
Confidence 333343
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.9e-13 Score=112.16 Aligned_cols=299 Identities=13% Similarity=0.107 Sum_probs=197.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPD---VWTYNMLING 89 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 89 (539)
|-.=++.+ -+++.++|.++|-+|.+.. +.+..+..+|...|.+.|..++|+.+.+.+..+.--+. ......|..-
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 33333433 3567888888888888864 44556777888888888888888888888877511111 1233445666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNA----VTHNIMIKWYCKEGK 165 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 165 (539)
|...|-++.|.++|..+.+.+ .--......|+..|-...+|++|++.-+++.+.+..+.. ..|.-+...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 778888888888888887643 223456777888888888888888888888777554432 244555556666778
Q ss_pred HhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 009255 166 IDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (539)
++.|..++++..+.+ +..+..--.+.+.....|++++|++.++.+.+.+..--+.+...+..+|...|+.++....+..
T Consensus 196 ~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888887763 2233444456677788888888888888888876555566777777888888888888888877
Q ss_pred HhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHC
Q 009255 246 ASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ---SGKTEQAIDMLNELLQS 319 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 319 (539)
+.+.... ...-..+........-.+.|...+.+-+.+ .|+...+..++..... -|...+.+..++.|...
T Consensus 275 ~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 275 AMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 7765332 223333333333344455555555444433 4677777777776543 34455666666666543
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.2e-12 Score=107.41 Aligned_cols=417 Identities=13% Similarity=0.091 Sum_probs=250.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 17 LDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+.-+..+.++..|+.+++--...+-.....+-.-+..++.+.|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 45566788999999999887766544333455556777889999999999999887753 45666777777777778888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 97 EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
.+|..+-.+..+ ++.....++....+.++-++...+-+.+.+ +..--.+|.......-.+++|++++++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888877665432 344445555556666776666666555543 2233444555555556677778888777
Q ss_pred HHcCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc--C-------------------
Q 009255 177 EENGFSPDCVTYNTLI-DANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE--K------------------- 234 (539)
Q Consensus 177 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~------------------- 234 (539)
... .|+-...|..+ -+|.+..-++-+.++++-..++ ++.++...+..+....+. |
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 765 24444444333 3445666666666666655554 222222222221111111 1
Q ss_pred --------------CHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 009255 235 --------------KLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGL 300 (539)
Q Consensus 235 --------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (539)
+-+.|++++-.+.+. -+..-..|+-.|.++++..+|..+.+++... ++.-|-.-...+
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~ 326 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVF 326 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHH
Confidence 122233332222222 2333344556677888999988887765432 222222222222
Q ss_pred HcCC-------CHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 009255 301 SQSG-------KTEQAIDMLNELLQSGMIPDE-TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR 372 (539)
Q Consensus 301 ~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (539)
...| ...-|...|+-.-.++..-|. .--..+...+.-..++++++.++..+..-- ..|......+..+++.
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~a 405 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLA 405 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHH
Confidence 3322 233455555443333322221 122344455556667888888888777653 3344444458888999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHhcCCHHHHH
Q 009255 373 EGILEKALKFFRSWILKGKAVDSVTY-NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTY-AAIHTALVESGRLEEAQ 450 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~ 450 (539)
.|++.+|+++|-++....++ |..+| ..|.++|.+.+.++.|+.++-++. -+.+..++ ..++..|.+.+.+=-|.
T Consensus 406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887665444 45555 466788999999999988776553 23333333 34567888999988888
Q ss_pred HHHHHHHHcC
Q 009255 451 KFTSIMVETG 460 (539)
Q Consensus 451 ~~~~~~~~~~ 460 (539)
+.|..+...+
T Consensus 482 KAFd~lE~lD 491 (557)
T KOG3785|consen 482 KAFDELEILD 491 (557)
T ss_pred HhhhHHHccC
Confidence 8888887776
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=7.1e-11 Score=107.25 Aligned_cols=437 Identities=12% Similarity=0.081 Sum_probs=274.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQ-GLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING 89 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 89 (539)
.+|-..++.+.++|++......|++.+.. .+.-...+|...+......|-++.+..++++.++. ++..-...+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777778888889999999999888765 22223347788888888888888999999988875 33446777788
Q ss_pred HHhcCChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHhccCCHhH---HHHHHHHHHhCCCCCC--HHHHHHHHH
Q 009255 90 WCNAGMLEEAFRLRKEMESLK------LLPDVVTYNTLINRFFESGRSME---AFKLIDELDEHGIKPN--AVTHNIMIK 158 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~ 158 (539)
+++.+++++|.+.+..+.... .+.+-..|..+.....++-+.-. ...+++.+... -+| ...|++|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 888899999888888776431 23445566666665555443322 22333333322 233 346889999
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHhhCCC
Q 009255 159 WYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKA----------------G------NMEEAFRMMDVMGRKGL 216 (539)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~ 216 (539)
.|.+.|.+++|.+++++..+. .....-|..+..+|+.- + +++-.+.-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 999999999999999988765 23333344444443321 1 12223333343332210
Q ss_pred -----------CCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcC-----CccCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 009255 217 -----------KMNTITLNTILHTLCCEKKLDEAYMLLNSASKRG-----YYLDEVSYGTLITGYFRDEKANRALKLWDE 280 (539)
Q Consensus 217 -----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 280 (539)
+.+...|..-+. ...|+..+-...+.++.+.- .......|..+...|-..|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 112222222222 23455666666676666531 011234677888889999999999999998
Q ss_pred HHHcCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-----------------CHHhHHHHHHHHhcCCC
Q 009255 281 MKERQIMPS---TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP-----------------DETTFNTIIHGFCSEGQ 340 (539)
Q Consensus 281 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~ 340 (539)
......+.- ..+|......-.+..+++.|+++++++....-.| +...|...+..-...|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 877543311 3456666666677888899998888765431111 22334445555556788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHc---cCChHHHHH
Q 009255 341 VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSV-TYNTLISSLCK---ERRLEDAFG 416 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~~~~~A~~ 416 (539)
++....+|+++++..+. ++.+....+..+..+.-++++.+++++-+..-..|++. .|+..+.-+.+ ....+.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888889988887654 55555555555666777888888888877764455543 66666555443 236788888
Q ss_pred HHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 417 LLSEMEEKKLGPDRY--TYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 417 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
+|+++++ +.+|... .|...+..-.+.|-...|..+++++...
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~ 615 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA 615 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 8888887 4555532 2223333333557777778888776554
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.68 E-value=1.2e-13 Score=129.26 Aligned_cols=484 Identities=17% Similarity=0.119 Sum_probs=276.6
Q ss_pred CCCCCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 009255 1 MEGFGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV 80 (539)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (539)
|+..|+.|+..||.++|..|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 456799999999999999999999999998 9999988887878888888888887777777665 4677
Q ss_pred hhHHHHHHHHHhcCChHH---HHHHHHHHHh----CC-----------------CCCChhhHHHHHHHHhccCCHhHHHH
Q 009255 81 WTYNMLINGWCNAGMLEE---AFRLRKEMES----LK-----------------LLPDVVTYNTLINRFFESGRSMEAFK 136 (539)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~---a~~~~~~~~~----~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (539)
.+|..|..+|.+.||... ..+.+..+.. .| .-||..+ ++....-.|-++.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence 788888888888887544 2222222211 11 1122111 1111111112222222
Q ss_pred H------------------------------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChh
Q 009255 137 L------------------------------IDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCV 186 (539)
Q Consensus 137 ~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 186 (539)
+ ........-.|++.+|..++.+-...|+.+.|..++.+|.+.|++.+.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~H 240 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAH 240 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccc
Confidence 1 1111111115889999999999999999999999999999999998888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHH-----------HHHhh-------
Q 009255 187 TYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLL-----------NSASK------- 248 (539)
Q Consensus 187 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~------- 248 (539)
-|..|+-+ .++...+..+++-|...|+.|+..|+...+..+..+|....+.... ..+..
T Consensus 241 yFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~ 317 (1088)
T KOG4318|consen 241 YFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKR 317 (1088)
T ss_pred cchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHH
Confidence 77777755 7788888889999999999999999988877776644422211100 00000
Q ss_pred ------------------cCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC-CCHhhHHHHHHHHHcCC---
Q 009255 249 ------------------RGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQ--IM-PSTFTYNAMIWGLSQSG--- 304 (539)
Q Consensus 249 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~--- 304 (539)
.|.......|..... ...+|.-+....+-..+..-- .. .+...|..++.-|.+.-
T Consensus 318 l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~ 396 (1088)
T KOG4318|consen 318 LRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERH 396 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhh
Confidence 011111111111111 111333333333333332110 01 11222323232222110
Q ss_pred -------------------CHHHHHHHHHHHHHC----------------CCCC-------CHHhHHHHHHHHhcCCCHH
Q 009255 305 -------------------KTEQAIDMLNELLQS----------------GMIP-------DETTFNTIIHGFCSEGQVE 342 (539)
Q Consensus 305 -------------------~~~~a~~~~~~~~~~----------------~~~~-------~~~~~~~l~~~~~~~~~~~ 342 (539)
......+........ ...| -...-+.++..|+..-+..
T Consensus 397 ~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 397 ICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 011111111110000 0000 0011122233333333333
Q ss_pred HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 009255 343 KALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKG--KAVDSVTYNTLISSLCKERRLEDAFGLLSE 420 (539)
Q Consensus 343 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 420 (539)
+++..-++....- -...|..+++.+......+.|..+.+++.... ...+...+..+.....+.+....+..++++
T Consensus 477 K~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 477 KILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 3333222222211 12456777888888888888888888776442 233555677788888888888999999988
Q ss_pred HHhCCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCH
Q 009255 421 MEEKKL-GPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRY 498 (539)
Q Consensus 421 ~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 498 (539)
+.+.-. .|+ ..++..+.......|+.+.-.+..+-+...+.. -+ ..+..+..+.++.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~-----------------et----gPl~~vhLrkdd~ 612 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS-----------------ET----GPLWMVHLRKDDQ 612 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh-----------------hc----ccceEEEeeccch
Confidence 876421 232 345566777777888888888888877776633 11 1223345566666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 499 KDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 499 ~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
..|+++.+..-+. ++|.......++..+.
T Consensus 613 s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 613 SAAQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 7777666655442 5666666666555554
No 55
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.9e-12 Score=108.72 Aligned_cols=428 Identities=12% Similarity=0.082 Sum_probs=264.0
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 009255 52 VSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRS 131 (539)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (539)
+.-+....|+..|+.+++.-...+-+-...+-.-+..++...|++++|+..+.-+.... .++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44456678899999998877654333222333345567789999999999999988754 56777788888888888999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 132 MEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
.+|..+..+..+ ++-....++....+.++-++.....+.+... ..--.+|.......-.+.+|++++...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999988766432 4555566677777888877777666665532 233345556656666799999999998
Q ss_pred hhCCCCCCHHhHHH-HHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHH-----------
Q 009255 212 GRKGLKMNTITLNT-ILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWD----------- 279 (539)
Q Consensus 212 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----------- 279 (539)
...+ |+-..++. +.-+|.+..-++-+.+++.-.... ++.++...+.......+.-+-..|..-..
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 8753 33334443 344566777777777777665544 22234444433333332111111111111
Q ss_pred ---HHHHcC------------CCC-----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC
Q 009255 280 ---EMKERQ------------IMP-----STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG 339 (539)
Q Consensus 280 ---~~~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (539)
.+..++ +-| -+..--.++-.|.+.+++.+|..+.+++.- ..|.......+ .+...|
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgv--v~aalG 330 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGV--VFAALG 330 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHH--HHHHhh
Confidence 111110 001 122233455567889999999988876542 12222222222 233333
Q ss_pred -------CHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 009255 340 -------QVEKALQFHNKMVEKSFKPD-IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL 411 (539)
Q Consensus 340 -------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (539)
...-|.+.|+..-+.+..-| +.--..+..++.-..++++.+..++.+..--.. |-..-..+..+++..|++
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny 409 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNY 409 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcCh
Confidence 34456666665544432211 112233444555566789999888888766333 333334578999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh--hHHHHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKI 489 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 489 (539)
.+|.++|-+.....++.+......++++|.+.+.++.|..++ ++.+ .|... ....++
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~------------------t~~e~fsLLqlIA 468 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTN------------------TPSERFSLLQLIA 468 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcC------------------CchhHHHHHHHHH
Confidence 999999988875444434444456778899999999987655 4444 23332 556777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 490 NEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
..|.+.+.+=-|.+.|+.+.. +.|+..-|.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELEI--LDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence 888899998888888888775 566665554
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=5.4e-13 Score=110.53 Aligned_cols=289 Identities=12% Similarity=0.128 Sum_probs=204.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccC---HhhHHHHHHHHHccCCHHHH
Q 009255 198 AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLD---EVSYGTLITGYFRDEKANRA 274 (539)
Q Consensus 198 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 274 (539)
+.+.++|++.|-+|.+.. +.+..+...+.+.|.+.|..+.|+++.+.+.++.-.+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 445666666666666532 22444455566666666777777776666665421111 12334566778888888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHhcCCCHHHHHHHHHH
Q 009255 275 LKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE----TTFNTIIHGFCSEGQVEKALQFHNK 350 (539)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (539)
+.+|..+.+.+.. -......|+..|-...+|++|++.-+++.+.+..+.. ..|..+...+....+.++|...+.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888888775332 4556777888888899999999998888876554332 3466677777778899999999999
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 009255 351 MVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR 430 (539)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 430 (539)
..+.+. .....--.+.+.+...|+++.|.+.|+.+.+.++..-+.+...|..+|.+.|+.++....+.++.+.. +..
T Consensus 206 Alqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 988753 35556667788888999999999999999987555556677888999999999999999999998764 444
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhh---cCCHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCS---QGRYKDALQIFEE 507 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 507 (539)
.....+...-....-.+.|...+.+-+... |+...+..+++.... -|++.+-+.+++.
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-------------------Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~ 343 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRK-------------------PTMRGFHRLMDYHLADAEEGRAKESLDLLRD 343 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhC-------------------CcHHHHHHHHHhhhccccccchhhhHHHHHH
Confidence 444455555554555677777777777765 888877777776553 3567778888888
Q ss_pred HHH
Q 009255 508 TRQ 510 (539)
Q Consensus 508 ~~~ 510 (539)
|+.
T Consensus 344 mvg 346 (389)
T COG2956 344 MVG 346 (389)
T ss_pred HHH
Confidence 775
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.1e-12 Score=115.30 Aligned_cols=439 Identities=13% Similarity=0.052 Sum_probs=293.0
Q ss_pred CCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH----HhCC-----
Q 009255 5 GCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLM----TQNK----- 75 (539)
Q Consensus 5 g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~----- 75 (539)
|+..|+...-.+++.+.-.|++..|..++..-.-. ..|..+......++.+..++++|..++... ....
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~ 121 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKD 121 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchh
Confidence 34456666677889999999999998888766443 347778888888999999999999998822 1100
Q ss_pred ----CCCChhh----HHHHH-------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH---HHHHHhccCCHhHHHHH
Q 009255 76 ----SLPDVWT----YNMLI-------NGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNT---LINRFFESGRSMEAFKL 137 (539)
Q Consensus 76 ----~~~~~~~----~~~l~-------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~ 137 (539)
..++..- -+.-. ..|....++++|...|.+.... |...+.. ++....- .+.+.
T Consensus 122 ~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~ml-----t~~Ee 192 (611)
T KOG1173|consen 122 AANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHML-----TAQEE 192 (611)
T ss_pred hhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhc-----chhHH
Confidence 0011111 01111 2233345567777777776643 4433333 2222211 11122
Q ss_pred HHHHHhCC----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 009255 138 IDELDEHG----IKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGR 213 (539)
Q Consensus 138 ~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 213 (539)
++.+.... ...+......+.........-+.....-....-.+..-+......-...+...+++.+..++.+.+.+
T Consensus 193 ~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle 272 (611)
T KOG1173|consen 193 FELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE 272 (611)
T ss_pred HHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh
Confidence 22222111 11122222222222100000000100011011112344566666667778888999999999999887
Q ss_pred CCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhH
Q 009255 214 KGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTY 293 (539)
Q Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (539)
. .++....+..-+.++...|+...-..+-.++.+. .+..+.+|-++...|...|+..+|++.|.+....+.. -...|
T Consensus 273 ~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaW 349 (611)
T KOG1173|consen 273 K-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAW 349 (611)
T ss_pred h-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHH
Confidence 6 3556666666677888888887777776777766 3446778889988888899999999999988765433 34678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc
Q 009255 294 NAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE 373 (539)
Q Consensus 294 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 373 (539)
-.+...|.-.|..++|+..+..+.+.- +-....+.-+..-|.+.++...|.++|..+.... +.|+.+.+.+.-+....
T Consensus 350 l~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~ 427 (611)
T KOG1173|consen 350 LAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTY 427 (611)
T ss_pred HHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehH
Confidence 888999999999999999998877652 2223334445556888999999999999998764 55788888888888888
Q ss_pred CCHHHHHHHHHHHHHc--CCC----CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 009255 374 GILEKALKFFRSWILK--GKA----VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLE 447 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (539)
+.+.+|..+|+..+.. ... .-..+++.|+.+|.+.+.+++|+..+++.+... +.+..++..++-.+...|+++
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChH
Confidence 9999999999887732 011 134468899999999999999999999999763 667888999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 009255 448 EAQKFTSIMVETG 460 (539)
Q Consensus 448 ~A~~~~~~~~~~~ 460 (539)
.|++.|.+++-..
T Consensus 507 ~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 507 KAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999886
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.67 E-value=2.4e-12 Score=110.21 Aligned_cols=293 Identities=13% Similarity=0.097 Sum_probs=150.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 009255 93 AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKI 172 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 172 (539)
.|++.+|++...+-.+.+ +.....|..-.++.-..|+.+.+-.++.++.+....++........+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 466666666666655543 2223334444455555666666666666666553344455555555666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCc
Q 009255 173 VRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYY 252 (539)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 252 (539)
+..+.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+...-..-
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le-------------------------- 228 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLE-------------------------- 228 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHH--------------------------
Confidence 66666553 334555566666666666666666666666666544333211100
Q ss_pred cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 009255 253 LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTII 332 (539)
Q Consensus 253 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (539)
..++..++.-....+..+.-...|+..... ...++..-..++.-+.+.|+.++|.++.++..+.+..|+ ...+
T Consensus 229 --~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~- 301 (400)
T COG3071 229 --QQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL- 301 (400)
T ss_pred --HHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-
Confidence 112333333333333333333333333221 112344444555555555666666655555555544333 1111
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 009255 333 HGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLE 412 (539)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (539)
-.+.+.++...-.+..+...+.. +.++..+..|...|.+.+.+.+|...|+...+. .|+...|+.+..++.+.|+..
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChH
Confidence 12344455555555555444432 224455555566666666666666666554443 455556666666666666666
Q ss_pred HHHHHHHHHHh
Q 009255 413 DAFGLLSEMEE 423 (539)
Q Consensus 413 ~A~~~~~~~~~ 423 (539)
+|.++.++...
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 66665555543
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=3.9e-14 Score=117.28 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=204.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 009255 256 VSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGF 335 (539)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 335 (539)
.--..+..+|.+.|-+.+|.+.++..++. .|-+.||-.|-.+|.+..++..|+.++.+-.+. ++-+......+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467889999999999999999998887 456778888999999999999999999998876 233555556677888
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 009255 336 CSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAF 415 (539)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 415 (539)
...++.+.|.++|+...+.. +.+++....+...|.-.++++-|..+++++...|.. ++..|+.+.-+|.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999999874 457888888888888899999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHh
Q 009255 416 GLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHC 493 (539)
Q Consensus 416 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 493 (539)
.-|++++..--.|+ ..+|..++......||+.-|.+.|+.++..+ +.+..++++|+-.-.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d------------------~~h~ealnNLavL~~ 440 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD------------------AQHGEALNNLAVLAA 440 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC------------------cchHHHHHhHHHHHh
Confidence 99999987654455 4688889999999999999999999999887 334449999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 494 SQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
+.|+.++|..+++.+.. +.|+-.
T Consensus 441 r~G~i~~Arsll~~A~s--~~P~m~ 463 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKS--VMPDMA 463 (478)
T ss_pred hcCchHHHHHHHHHhhh--hCcccc
Confidence 99999999999999986 567643
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=1.7e-09 Score=98.48 Aligned_cols=441 Identities=12% Similarity=0.080 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 45 RTTYNILVSGYCKLGWLKEAMRVVDLMTQN-KSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLIN 123 (539)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (539)
+.+|...+.....+|+....+..|+..+.. .+.....+|...+......|-++.+.+++++..+. ++..-+..+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456777778888899999999999988765 22234567888888888889999999999999873 4455777888
Q ss_pred HHhccCCHhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHcCCCCCh--hhHHHHH
Q 009255 124 RFFESGRSMEAFKLIDELDEHG------IKPNAVTHNIMIKWYCKEGKI---DKACKIVRNMEENGFSPDC--VTYNTLI 192 (539)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~ 192 (539)
.++..+++++|-+.+..++... .+.+-..|.-+-....+.-+. -....+++.+... -+|. ..|.+|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHH
Confidence 8999999999999998876431 233445565555555444332 2334455554433 2443 4789999
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCC----------------------HHHHHHHHHHHhhcC
Q 009255 193 DANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKK----------------------LDEAYMLLNSASKRG 250 (539)
Q Consensus 193 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~ 250 (539)
..|.+.|.+++|.++|++....- .+..-+..+..+|+.-.. ++-....|+.+....
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 99999999999999999987752 233334444444432111 122223333333321
Q ss_pred Cc-----------cCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHcCCCHHHHHHHH
Q 009255 251 YY-----------LDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMP------STFTYNAMIWGLSQSGKTEQAIDML 313 (539)
Q Consensus 251 ~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (539)
.. .+...|.. ..-...|+..+-...|.++... +.| -...|..+...|-..|+.+.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 10 01111111 1122345666777777776653 111 2346888889999999999999999
Q ss_pred HHHHHCCCCCC---HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----------------CHHhHHHHHHHHHhc
Q 009255 314 NELLQSGMIPD---ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP-----------------DIVTCNILLSGLCRE 373 (539)
Q Consensus 314 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~ 373 (539)
++..+...+.- ..+|..-...-.+..+++.|..+.+.+....-.| +..+|...++.-...
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 99887643311 2233333344456678888888888876532111 233555566666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHH---HHhcCCHHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR-YTYAAIHTA---LVESGRLEEA 449 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~A 449 (539)
|-++....+++++++..+. ++......+..+-.+.-++++.+.|++-+..-..|+. ..|+..+.- -.....++.|
T Consensus 491 gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred ccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8899999999999887554 5555555555666777889999999987765435554 333332222 2234568999
Q ss_pred HHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 450 QKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
+.+|+++++.. ||... .|...+..--+.|--..|+.+|+++.. +..+.
T Consensus 570 RdLFEqaL~~C------------------pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a 619 (835)
T KOG2047|consen 570 RDLFEQALDGC------------------PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEA 619 (835)
T ss_pred HHHHHHHHhcC------------------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHH
Confidence 99999999955 45444 455555556667999999999999875 34443
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=6.1e-10 Score=101.55 Aligned_cols=468 Identities=16% Similarity=0.106 Sum_probs=308.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGW 90 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (539)
..|..++..| ..+++...+++.+.+++. .+-...+....+-.+...|+-++|........+..+. +.+.|..+.-.+
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHH
Confidence 3455666655 678999999999999885 4556667777777778899999999999888886554 677888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 009255 91 CNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKAC 170 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 170 (539)
....++++|++.|......+ +.|...|.-+...-.+.++++.....-..+.+.. +-....|..++.++.-.|+...|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999998875 4567777777776777888888877777776652 224567888888888899999999
Q ss_pred HHHHHHHHcCC-CCChhhHHHHH------HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHH
Q 009255 171 KIVRNMEENGF-SPDCVTYNTLI------DANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLL 243 (539)
Q Consensus 171 ~~~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 243 (539)
.+++...+... .|+...+.... ....+.|.+++|.+.+..-... +.........-...+.+.++.++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 99999887542 45655554332 2345678888888887665433 2212223344556677899999999999
Q ss_pred HHHhhcCCccCHhh-HHHHHHHHHccCCHHHHH-HHHHHHHHcCCCCCHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHCC
Q 009255 244 NSASKRGYYLDEVS-YGTLITGYFRDEKANRAL-KLWDEMKERQIMPSTFTYNAM-IWGLSQSGKTEQAIDMLNELLQSG 320 (539)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 320 (539)
..++... ||... |..+..++....+..++. .+|....+.- |....-..+ +....-..-.+..-.++....+.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999884 44444 444455554333333333 6666555431 111111111 111111223344555666677777
Q ss_pred CCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHH--------hCC----------CCCCHHhH--HHHHHHHHhcCCHHHHH
Q 009255 321 MIPDETTFNTIIHGFCSEGQVEKALQFHNKMV--------EKS----------FKPDIVTC--NILLSGLCREGILEKAL 380 (539)
Q Consensus 321 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~ 380 (539)
+++-. ..+...|-... ++. ++++.. ..+ -+|....| ..++..+-..|+++.|.
T Consensus 319 ~p~vf---~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~ 391 (700)
T KOG1156|consen 319 VPSVF---KDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVAL 391 (700)
T ss_pred CCchh---hhhHHHHhchh---HhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHH
Confidence 66533 33333332211 111 222221 111 13444444 34566788899999999
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 381 KFFRSWILKGKAVDS-VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 381 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
..++..+.. .|+. ..|..=.+.+.+.|++++|..++++..+.+ .||..+-..-+.-..++++.++|.++..+..+.
T Consensus 392 ~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 392 EYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 999998875 3443 355555688999999999999999999765 556555446677778899999999999999887
Q ss_pred CCCCcccccCCCCCCCCCCCCChh-hHHHH--HHHHhhcCCHHHHHHHHHHHHH
Q 009255 460 GKINHQVVQPNTSKTPEEIDPSSI-SYSEK--INEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.. .+.+ -.+.. .|..+ +.+|.++|++.+|++-|..+-+
T Consensus 469 ~~~---~~~~---------L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 469 GFG---AVNN---------LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred ccc---hhhh---------HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 731 0000 01111 56544 6778899999888877666543
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.59 E-value=4.7e-10 Score=104.35 Aligned_cols=409 Identities=13% Similarity=0.039 Sum_probs=200.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 009255 78 PDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKP-NAVTHNIM 156 (539)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 156 (539)
-+...|..+.-+....|+++.+.+.|++....- ......|..+...+...|.-..|..+++.-......| ++..+...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 345555555555555566666655555554321 2234455555555555555555555555544332222 22222222
Q ss_pred HHHHH-hcCCHhHHHHHHHHHHHc--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCH
Q 009255 157 IKWYC-KEGKIDKACKIVRNMEEN--G--FSPDCVTYNTLIDANCKA-----------GNMEEAFRMMDVMGRKGLKMNT 220 (539)
Q Consensus 157 ~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 220 (539)
...|. +.+..+++.+.-.++... + -...+..|..+.-+|... ....++++.+++..+.+.. |+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cc
Confidence 22222 234444444444444331 0 011223333333333211 1123455555555443321 33
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGL 300 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (539)
.....+.--|+..++.+.|.+..++..+.+...+...|..|...+...+++.+|+.+.+.....-.. |......-+..-
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDGKIHIE 557 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchhhhhhh
Confidence 3333333344555555666655555555544445555555555555556666666555554433110 111111112222
Q ss_pred HcCCCHHHHHHHHHHHHHCC--CCCCHHhHH--HHHHH----HhcCCCHHHHHHHHHHHH--------hCC---------
Q 009255 301 SQSGKTEQAIDMLNELLQSG--MIPDETTFN--TIIHG----FCSEGQVEKALQFHNKMV--------EKS--------- 355 (539)
Q Consensus 301 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~--~l~~~----~~~~~~~~~a~~~~~~~~--------~~~--------- 355 (539)
...++.++++.....+...- ..+-..+.. ...+. ....++..++......+. ..+
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 23455555555555543210 000000000 00000 000011111111111111 000
Q ss_pred C--CCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 009255 356 F--KPD------IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLG 427 (539)
Q Consensus 356 ~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 427 (539)
. .|+ ...|......+.+.++.++|...+.+.... .+..+..|...+..+...|.+.+|.+.|..+... .
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--d 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--D 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--C
Confidence 0 111 123444555666777777777777666654 2334556666667777778888888888877743 4
Q ss_pred CC-HhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 009255 428 PD-RYTYAAIHTALVESGRLEEAQK--FTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQI 504 (539)
Q Consensus 428 ~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 504 (539)
|+ ..+..+++.++.+.|+..-|.. ++..+++.+ +.+..+|..++..+.+.|+.+.|.+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------------------p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------------------PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------------------CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 44 4667778888888887766666 888888877 34445888888888888888888888
Q ss_pred HHHHHH
Q 009255 505 FEETRQ 510 (539)
Q Consensus 505 ~~~~~~ 510 (539)
|..+.+
T Consensus 777 f~aa~q 782 (799)
T KOG4162|consen 777 FQAALQ 782 (799)
T ss_pred HHHHHh
Confidence 888776
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=7.8e-10 Score=100.87 Aligned_cols=433 Identities=13% Similarity=0.084 Sum_probs=294.4
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 009255 47 TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFF 126 (539)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 126 (539)
.|..++.+| ..+++...++..+.+.+..+. ...+.....-.+...|+-++|......-...+ ..+.+.|+.+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 445555554 678899999999988885332 44555555556677899999999988887755 457788999999898
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 009255 127 ESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFR 206 (539)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 206 (539)
..+++++|++.|..+...+. .|...+.-+.-.-++.|+++........+.+.. +.....|..++.++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988743 367778777777778899998888888887752 3344567888888889999999999
Q ss_pred HHHHHhhCC-CCCCHHhHHHHH------HHHhccCCHHHHHHHHHHHhhcCCccCHhh-HHHHHHHHHccCCHHHHHHHH
Q 009255 207 MMDVMGRKG-LKMNTITLNTIL------HTLCCEKKLDEAYMLLNSASKRGYYLDEVS-YGTLITGYFRDEKANRALKLW 278 (539)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~ 278 (539)
++++..+.. ..|+...+.... ......|..+.|.+.+...... ..|... -..-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999988764 345665554332 3344667778887777665543 112222 234456778899999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHH-HHHcCCCHHHHH-HHHHHHHHCCCCCCHHhHHHH-HHHHhcCCCHHHHHHHHHHHHhCC
Q 009255 279 DEMKERQIMPSTFTYNAMIW-GLSQSGKTEQAI-DMLNELLQSGMIPDETTFNTI-IHGFCSEGQVEKALQFHNKMVEKS 355 (539)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~ 355 (539)
..++..+ ||...|..... ++..-.+..++. .+|....+.- |.......+ +.......-.+....++...++.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999874 56655555444 443333344444 5666555432 222221111 111122233445556677777777
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCChhhHH--HHHHHHHccCChHHHHHHHH
Q 009255 356 FKPDIVTCNILLSGLCREGILEKALKFFRSWIL----KG----------KAVDSVTYN--TLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~ 419 (539)
+++ ++..+...|-.....+--.++.-.+.. .| .+|....|. .++..+...|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 333444444322222111111111111 10 255555554 56778889999999999999
Q ss_pred HHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCH
Q 009255 420 EMEEKKLGPDR-YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRY 498 (539)
Q Consensus 420 ~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 498 (539)
.++++ .|+. .-|..-++.+...|++++|..+++.+.+.+ .||...-...+.-..++.+.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD------------------~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD------------------TADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc------------------chhHHHHHHHHHHHHHcccc
Confidence 99954 6764 556666788999999999999999999988 56666665778888899999
Q ss_pred HHHHHHHHHHHHcCC
Q 009255 499 KDALQIFEETRQKGI 513 (539)
Q Consensus 499 ~~A~~~~~~~~~~~~ 513 (539)
++|.++.......|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999999987663
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=2.3e-10 Score=107.00 Aligned_cols=294 Identities=16% Similarity=0.096 Sum_probs=203.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNA-- 93 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 93 (539)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..++..++. +..-|..+..+....
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 345678899999999999886665 3444556778889999999999999999999998754 555566666665332
Q ss_pred ---CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 009255 94 ---GMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRS-MEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKA 169 (539)
Q Consensus 94 ---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 169 (539)
.+.+....+++++... .|.......+...+.....+ ..+..++..+...|++ .+|..+-..|......+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 2467778888888765 34444443343333332233 2455666677777765 3456666666655555555
Q ss_pred HHHHHHHHHc----C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc
Q 009255 170 CKIVRNMEEN----G----------FSPDCV--TYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE 233 (539)
Q Consensus 170 ~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (539)
.+++...... + -+|+.. ++..+...|...|++++|++++++.+... +..+..|..-.+.+-..
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5666555432 1 123442 44556777888999999999999888873 22467788888888999
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHh--------hHHHHHHHHHcCCC
Q 009255 234 KKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTF--------TYNAMIWGLSQSGK 305 (539)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~ 305 (539)
|++.+|...++.+...+.. |...-+-.+..+.+.|+.++|.+++......+..|... -......+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998887543 66666677788889999999999988887655322221 12345577888888
Q ss_pred HHHHHHHHHHHHH
Q 009255 306 TEQAIDMLNELLQ 318 (539)
Q Consensus 306 ~~~a~~~~~~~~~ 318 (539)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=1.8e-09 Score=100.62 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=101.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPE 476 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (539)
.|......+...++.++|...+.++... .+-....|...+..+...|.+++|.+.|..++..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld---------------- 714 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD---------------- 714 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC----------------
Confidence 3556677788889999999999888754 24456677777888889999999999999999987
Q ss_pred CCCCChh-hHHHHHHHHhhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhccC
Q 009255 477 EIDPSSI-SYSEKINEHCSQGRYKDALQ--IFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAVD 539 (539)
Q Consensus 477 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 539 (539)
|+.. ....++.++.+.|+..-|.. ++..+++ +.|+...+...++..++..|+.++|.|
T Consensus 715 ---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 715 ---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred ---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 5554 99999999999999888877 9999997 679999999999999999998888854
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-09 Score=93.89 Aligned_cols=302 Identities=10% Similarity=-0.036 Sum_probs=209.6
Q ss_pred cCCHHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHH
Q 009255 198 AGNMEEAFRMMDVMGR-KGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALK 276 (539)
Q Consensus 198 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 276 (539)
.++...+...+-.+.. .-++-|...+..+..++...|+.++|...|++....+.. +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 3444444444333322 235667777888888888889999988888887765321 22222223334557788888777
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC
Q 009255 277 LWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF 356 (539)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 356 (539)
+...+....- -....|..-+.......+++.|+.+-++.++.... +...+..-...+...|+.+.|.-.|+......
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 7777655421 13334444445555677888898888888776433 45556555667788899999999998888763
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHHc-cCChHHHHHHHHHHHhCCCCCC-HhhH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLI-SSLCK-ERRLEDAFGLLSEMEEKKLGPD-RYTY 433 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~A~~~~~~~~~~~~~~~-~~~~ 433 (539)
+.+..+|..|+..|...|.+.+|..+-+..... .+.+..+...++ .++.. -.--++|.+++++... +.|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 347889999999999999999988877766654 333555555442 33322 2234788888888874 4666 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
..++..|...|+.++++.++++.+... ||....+.|++.+...+.+++|.+.|..++. +
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~-------------------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIF-------------------PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--Q 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhc-------------------cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--c
Confidence 778888899999999999999999886 8888999999999999999999999999986 5
Q ss_pred CCCHHHHHHHHHHH
Q 009255 514 AINKSTYMNLMNGL 527 (539)
Q Consensus 514 ~p~~~~~~~~l~~~ 527 (539)
.|++.-...=+.-+
T Consensus 501 dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 501 DPKSKRTLRGLRLL 514 (564)
T ss_pred CccchHHHHHHHHH
Confidence 78776444434333
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.1e-09 Score=91.75 Aligned_cols=289 Identities=12% Similarity=0.026 Sum_probs=212.3
Q ss_pred cCCHhHHHHHHHHHHH-cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 009255 163 EGKIDKACKIVRNMEE-NGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYM 241 (539)
Q Consensus 163 ~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (539)
.++...+...+-.+.. .-++.|......+...+...|+.++|+..|++....+ +-+...+......+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 4444444444433332 2256678888899999999999999999999887652 1133344445556678888888888
Q ss_pred HHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 009255 242 LLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGM 321 (539)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 321 (539)
+...+....- .+...|..-+......+++..|+.+-++.+..+.. +...+-.-...+...+++++|.-.|+.++...+
T Consensus 288 L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 288 LMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 8777765431 13334444445556678899999998888876443 455666666788899999999999998887532
Q ss_pred CCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcCCCCC-hhhH
Q 009255 322 IPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILL-SGLC-REGILEKALKFFRSWILKGKAVD-SVTY 398 (539)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 398 (539)
-+..+|..++.+|...|.+.+|...-....+. ++.+..+...+. .++. ....-++|.++++..... .|+ ....
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 36789999999999999999998887777665 344666666653 3332 233457899999887765 444 3366
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.+...+...|...+++.++++... ..||......++..+...+.+++|...|..++..+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 7788888899999999999999885 47888888999999999999999999999999987
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.52 E-value=1.2e-11 Score=119.89 Aligned_cols=148 Identities=11% Similarity=-0.064 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 009255 271 ANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNK 350 (539)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (539)
+++|...+++..+.++. +...+..+...+...|++++|...++++.+..+. +...+..+..++...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44455555544444332 3444444444444445555555555554443221 233344444444445555555555555
Q ss_pred HHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 009255 351 MVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEM 421 (539)
Q Consensus 351 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 421 (539)
+++..+. +...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4443211 111122222223334444555555444443311112223344444444455555555554444
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=2.2e-11 Score=105.66 Aligned_cols=200 Identities=15% Similarity=0.097 Sum_probs=136.4
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 009255 290 TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSG 369 (539)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 369 (539)
...+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 44555666666777777777777777665432 244556666677777777777777777777653 2355566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 370 LCREGILEKALKFFRSWILKGK-AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
+...|++++|.+.++++..... +.....+..+..++...|++++|...+.+..... +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 7777788888887777765422 1233456667777778888888888888877643 3345566677777888888888
Q ss_pred HHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 449 AQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 449 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|.++++++++.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888877764 24445666777777788888888887777654
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=6e-09 Score=94.20 Aligned_cols=453 Identities=13% Similarity=0.077 Sum_probs=261.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWC 91 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (539)
.+-+=++.+..+|++++|.+...+++..+ |.+..++..=+.++++.++|++|+.+.+.-.... ..+...| .-.-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHHH
Confidence 34445677788999999999999999886 6678888899999999999999996665433210 0111111 2233445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 009255 92 NAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKP-NAVTHNIMIKWYCKEGKIDKAC 170 (539)
Q Consensus 92 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 170 (539)
+.+..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+... +...-..++.+- ..-.+.
T Consensus 91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 8899999999988332 2344577777888999999999999999998875431 111222222211 111111
Q ss_pred HHHHHHHHcCCCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHH-------hHHHHHHHHhcc
Q 009255 171 KIVRNMEENGFSPDCVTYNT---LIDANCKAGNMEEAFRMMDVMGRK-------GLKMNTI-------TLNTILHTLCCE 233 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~ 233 (539)
+.+.... .| ..+|.. ..-.+...|++.+|+++++...+. +-.-+.. +-..+.-++-..
T Consensus 163 -~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 163 -LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred -HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 2222221 22 223332 344567889999999999887221 1111111 223455566788
Q ss_pred CCHHHHHHHHHHHhhcCCccCHh----hHHHHHHHHHccCCHH-HHHHHHHHHHHcCC----------CCCHhhH-HHHH
Q 009255 234 KKLDEAYMLLNSASKRGYYLDEV----SYGTLITGYFRDEKAN-RALKLWDEMKERQI----------MPSTFTY-NAMI 297 (539)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~l~ 297 (539)
|+..+|..++..+++.... |.. ..|.|+.+-....-.+ .++..++....... .-..... +.++
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887643 322 2222332211111111 12222222211100 0001111 1222
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc--CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS--EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI 375 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 375 (539)
..| .+..+.+.++...... ..|. ..+..++..+.+ .....++.+++....+........+....+......|+
T Consensus 317 ~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 317 ALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 222 2334444444332221 1222 233334433322 22466777777777765433335566667777888999
Q ss_pred HHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC---CC--CCC-HhhHHHHHHHHH
Q 009255 376 LEKALKFFR--------SWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK---KL--GPD-RYTYAAIHTALV 441 (539)
Q Consensus 376 ~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~-~~~~~~l~~~~~ 441 (539)
++.|.+++. .+.+.+. .+.+...+...+.+.++-+.|..++.+++.. .. .+. ...+..++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999988 4444433 3445566666777777777777777776642 10 111 123333444455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
+.|+-++|...++++++.+ +++..+...++.+|+.. +++.|..+-+.
T Consensus 470 r~G~~~ea~s~leel~k~n------------------~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN------------------PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hcCchHHHHHHHHHHHHhC------------------CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 7799999999999999987 56677888888887764 45666655443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=2.5e-11 Score=117.63 Aligned_cols=233 Identities=15% Similarity=0.027 Sum_probs=170.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC
Q 009255 269 EKANRALKLWDEMKERQIMPSTFTYNAMIWGLS---------QSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG 339 (539)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (539)
+..++|...|++..+..+. +...|..+..++. ..+++++|...++++.+..+. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4567888888888877543 4556665555443 234588999999999887543 6677778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 419 (539)
++++|...++++++.+ +.+...+..+..++...|++++|...++++....+. ++..+..++..+...|++++|+..++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999875 346778888899999999999999999999887433 33334445555677899999999999
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCC
Q 009255 420 EMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGR 497 (539)
Q Consensus 420 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 497 (539)
++.... +|+ ...+..++.++...|++++|.+.++++.... |+.. .++.++..|...|
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-------------------ITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-------------------chhHHHHHHHHHHHhccH-
Confidence 987653 343 4556678888889999999999998876654 5444 6777777888888
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 009255 498 YKDALQIFEETRQ-KGIAINKSTYMNLMNGL 527 (539)
Q Consensus 498 ~~~A~~~~~~~~~-~~~~p~~~~~~~~l~~~ 527 (539)
++|...++++.+ ..-.|....+...+-++
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 478777777665 22344444444443333
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=5.2e-12 Score=104.94 Aligned_cols=237 Identities=11% Similarity=-0.002 Sum_probs=196.3
Q ss_pred CCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 009255 218 MNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMI 297 (539)
Q Consensus 218 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (539)
.|-..-..+.++|.+.|...+|.+.++...+. .+.+.+|..|-..|.+..++..|+.++.+-++.-+ .+........
T Consensus 221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~A 297 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQA 297 (478)
T ss_pred HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhH
Confidence 34445567889999999999999999988876 45677888899999999999999999998887632 2444455667
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHH
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILE 377 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 377 (539)
..+...++.++|.++++...+... .+.+....+...|.-.++++-|..+|+++++.|+. +++.|..+.-+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 788888999999999999888643 36677777778888899999999999999999865 8899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 378 KALKFFRSWILKGKAVD--SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 378 ~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
-++.-|++....-..|+ ..+|..+.......||+..|.+.|+-.+..+ ..+...++.|+-.-.+.|+.++|+.++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999999887644444 4478889988899999999999999888653 44567888888888899999999999999
Q ss_pred HHHcC
Q 009255 456 MVETG 460 (539)
Q Consensus 456 ~~~~~ 460 (539)
+....
T Consensus 455 A~s~~ 459 (478)
T KOG1129|consen 455 AKSVM 459 (478)
T ss_pred hhhhC
Confidence 88776
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.50 E-value=3.1e-11 Score=104.69 Aligned_cols=201 Identities=16% Similarity=0.066 Sum_probs=121.6
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 44 NRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLIN 123 (539)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 123 (539)
....+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3445666666666666777776666666654322 44555666666666667777766666666543 334455566666
Q ss_pred HHhccCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 009255 124 RFFESGRSMEAFKLIDELDEHGI-KPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNME 202 (539)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 202 (539)
.+...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 66666777777777666655321 1233445556666667777777777776666542 223445666666666777777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhh
Q 009255 203 EAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASK 248 (539)
Q Consensus 203 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 248 (539)
+|...+++.... .+.+...+......+...|+.+.|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777766654 233455555556666666777777666655543
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.7e-10 Score=98.79 Aligned_cols=439 Identities=14% Similarity=0.114 Sum_probs=267.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 17 LDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
.++.+..|+++.|+.+|-+.+... |+|-..|+.-..+|...|++++|++=-.+..+.++. =+..|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 456678899999999999999886 557778888899999999999998877777766433 346788888888889999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH-----HHHhcCCHhHHHH
Q 009255 97 EEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIK-----WYCKEGKIDKACK 171 (539)
Q Consensus 97 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~ 171 (539)
++|+..|.+-.+.. +.+...+..+..++ ..+.+. +. ...++..|..+.. .+.....+..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~--- 150 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVK--- 150 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHH---
Confidence 99999999987753 33455566666665 111111 10 1112222222211 1111111111
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-----HHhhCC-------CCCCHHhHHHHHHHHhccCCHHHH
Q 009255 172 IVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMD-----VMGRKG-------LKMNTITLNTILHTLCCEKKLDEA 239 (539)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a 239 (539)
+++.+.. .|+. +..|........+.-.+. .....+ ..|. .......-..++..+-
T Consensus 151 ~l~~~~~---~p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee 217 (539)
T KOG0548|consen 151 ILEIIQK---NPTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEE 217 (539)
T ss_pred HHHHhhc---CcHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHH
Confidence 1111111 1111 000111000111111110 000001 1111 0000000000011100
Q ss_pred HHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009255 240 YMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS 319 (539)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (539)
.+. ..-..-...+.....+..+++.+++.+....+.. .+..-++....+|...|....+...-....+.
T Consensus 218 ~~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~ 286 (539)
T KOG0548|consen 218 RRV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEV 286 (539)
T ss_pred HHH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHH
Confidence 000 0012234556777777788888888888877764 25555666677788888888777777776665
Q ss_pred CCCCCHHh-------HHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 320 GMIPDETT-------FNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKA 392 (539)
Q Consensus 320 ~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 392 (539)
|.. ...- +..+..++.+.++++.++..|.+.+...-.|+ ...+....+++.+..+...-.++.
T Consensus 287 gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe 356 (539)
T KOG0548|consen 287 GRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPE 356 (539)
T ss_pred hHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChh
Confidence 433 1222 22344466667889999999998776533322 223334455565555544433222
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 393 VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 393 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
- ..-...-+..+.+.|++..|+..|.+++... +.|...|...+-+|.+.|.+..|++-.+..++.+
T Consensus 357 ~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------------ 422 (539)
T KOG0548|consen 357 K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD------------ 422 (539)
T ss_pred H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------------
Confidence 1 1122233667888999999999999999875 5567888899999999999999999999999987
Q ss_pred CCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009255 473 KTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKR 530 (539)
Q Consensus 473 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 530 (539)
|+.. .|..=+.++....+|++|++.|++.++ +.|+...+..-+.-|...
T Consensus 423 -------p~~~kgy~RKg~al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 423 -------PNFIKAYLRKGAALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHH
Confidence 6555 888888899999999999999999997 579988888888877764
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.8e-09 Score=95.42 Aligned_cols=449 Identities=15% Similarity=0.077 Sum_probs=253.2
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 009255 48 YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE 127 (539)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (539)
..+=+..+...|++++|.+...++...++. +...+..-+-++.+.+++++|+.+.+.-... ..+..-+..=..+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 334456677899999999999999998744 6667777777889999999999655543211 1111111223445568
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 009255 128 SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRM 207 (539)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 207 (539)
.+..++|+..++-... .+..+...-...+.+.|++++|.++|+.+.+.+.+ +. ...+.+-+.. ...+...
T Consensus 92 lnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~---d~~~r~nl~a--~~a~l~~ 161 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQ---DEERRANLLA--VAAALQV 161 (652)
T ss_pred cccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hH---HHHHHHHHHH--HHHhhhH
Confidence 8999999999883322 24446667778899999999999999999876432 22 2222111100 0111111
Q ss_pred HHHHhhCCCCC--CHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCC-------ccCH-------hhHHHHHHHHHccCCH
Q 009255 208 MDVMGRKGLKM--NTITLNTILHTLCCEKKLDEAYMLLNSASKRGY-------YLDE-------VSYGTLITGYFRDEKA 271 (539)
Q Consensus 208 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~ 271 (539)
+.+......| +-..+....-.+...|++.+|+++++...+.+. ..+. ..-..|...+...|+.
T Consensus 162 -~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 -QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0122222222 222333344456688999999999998833210 0011 1223455667789999
Q ss_pred HHHHHHHHHHHHcCCCCCHhh----HHHHHHHHHcCCCH-H-HHHHHHHHHHHCC-------C---CCCHHhHH-HHHHH
Q 009255 272 NRALKLWDEMKERQIMPSTFT----YNAMIWGLSQSGKT-E-QAIDMLNELLQSG-------M---IPDETTFN-TIIHG 334 (539)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~-~-~a~~~~~~~~~~~-------~---~~~~~~~~-~l~~~ 334 (539)
.+|..++..++..++. |... -|.++.. ..-.++ + .++..++...... + .......+ .++..
T Consensus 241 ~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887654 4322 2222221 111111 1 1222222111100 0 00011111 12222
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLC--REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLE 412 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (539)
+ .+..+.+.++....-. ..|.. .+..++..+. +......|..++....+....-...+....+......|+++
T Consensus 319 ~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 319 F--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred H--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence 2 2333344333332221 12332 3333333322 22347778888887776533322445566777788899999
Q ss_pred HHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhh
Q 009255 413 DAFGLLS--------EMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSIS 484 (539)
Q Consensus 413 ~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (539)
.|++++. ...+.+..| .+...+...+.+.++.+.|..++..++..-... ......-...
T Consensus 394 ~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~-----------~t~s~~l~~~ 460 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ-----------QTGSIALLSL 460 (652)
T ss_pred HHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh-----------cccchHHHhH
Confidence 9999999 554443333 455666677777777777777777766543110 0000111225
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009255 485 YSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRR 531 (539)
Q Consensus 485 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 531 (539)
|..++..-.+.|+-++|..+++++.+.. .+|......+..++.+-+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 6666777778899999999999999842 344456666666665543
No 76
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1.1e-10 Score=107.57 Aligned_cols=261 Identities=17% Similarity=0.141 Sum_probs=177.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCC-C
Q 009255 257 SYGTLITGYFRDEKANRALKLWDEMKER-----Q-IMPST-FTYNAMIWGLSQSGKTEQAIDMLNELLQS-----GMI-P 323 (539)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~-~ 323 (539)
+...+...|...|+++.|+.+++..+.. | ..|.. ...+.+...|...+++++|..+|+++... |.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666776666666655432 1 11222 22334667788888888888888887642 211 1
Q ss_pred C-HHhHHHHHHHHhcCCCHHHHHHHHHHHHhC-----CC-CCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC
Q 009255 324 D-ETTFNTIIHGFCSEGQVEKALQFHNKMVEK-----SF-KPD-IVTCNILLSGLCREGILEKALKFFRSWILK---GKA 392 (539)
Q Consensus 324 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 392 (539)
. ..++..|..+|.+.|++++|...++.+.+. +. .|. ...++.+...|...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 236677777888889988888877776542 11 122 224566777888899999999999876643 122
Q ss_pred CC----hhhHHHHHHHHHccCChHHHHHHHHHHHhC-----C-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 393 VD----SVTYNTLISSLCKERRLEDAFGLLSEMEEK-----K-LGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETGK 461 (539)
Q Consensus 393 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 461 (539)
++ ..+++.|...|...|++++|.+++++++.. + ..+ ....++.++..|.+.+++++|.++|.+......
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 347899999999999999999999998754 1 112 245677889999999999999999888765431
Q ss_pred CCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHHHh
Q 009255 462 INHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ------KGIAINKSTYMNLMNGLIK 529 (539)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~p~~~~~~~~l~~~~~ 529 (539)
. .-.-.|+.. +|.+|+.+|.+.|++++|.++.+.+.. ....|+..+.......+..
T Consensus 441 ~------------~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (508)
T KOG1840|consen 441 L------------CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADLSK 503 (508)
T ss_pred H------------hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhhHHHH
Confidence 0 000135665 899999999999999999999998773 1245666666666655544
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=1.8e-10 Score=91.39 Aligned_cols=209 Identities=16% Similarity=0.066 Sum_probs=134.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 009255 293 YNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR 372 (539)
Q Consensus 293 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 372 (539)
...+.-.|.+.|+...|.+-+++.++..+. +..++..+...|.+.|+.+.|.+.|++.++.. +.+..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 444556677777777777777777766433 45566666777777777777777777777664 2356666777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 009255 373 EGILEKALKFFRSWILKGKAV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 451 (539)
.|++++|...|++......-+ -..+|..++.+..+.|+.+.|...|++.++.. +-...+...+.+.....|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777777776542111 23466777777777777777777777777652 2234456667777777777777777
Q ss_pred HHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009255 452 FTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 524 (539)
+++.....+ +++.......++.-...|+-+.|.+.=.++.. ..|..+.+..++
T Consensus 195 ~~~~~~~~~------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f~ 247 (250)
T COG3063 195 YLERYQQRG------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTFL 247 (250)
T ss_pred HHHHHHhcc------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhHh
Confidence 777776665 45555555556666666777666665555543 466666655543
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=2e-10 Score=101.84 Aligned_cols=242 Identities=11% Similarity=-0.017 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHH
Q 009255 269 EKANRALKLWDEMKERQI-MP--STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKAL 345 (539)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (539)
+..+.++..+.+++.... .| ....|......+...|+.++|...|++..+..+. +...|..+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 455667777777765322 11 2455777788889999999999999999887543 6788889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 009255 346 QFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK 425 (539)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 425 (539)
..|+..++... .+..++..+..++...|++++|.+.|++..... |+..........+...+++++|...+.+....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 99999998742 356788888888999999999999999998863 33222222222344567899999999776643
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHH
Q 009255 426 LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQI 504 (539)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 504 (539)
..|+... ...+....|+..++ +.++.+.+.... .....|+ ..+|..++..+.+.|++++|+..
T Consensus 195 ~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~------------~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~ 258 (296)
T PRK11189 195 LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATD------------NTELAERLCETYFYLAKYYLSLGDLDEAAAL 258 (296)
T ss_pred CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCC------------cHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2333222 23334445666554 345555432211 0000122 34899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009255 505 FEETRQKGIAINKSTYMNLMNGLIKRRK 532 (539)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 532 (539)
|+++++.+ .||...++..+..+....+
T Consensus 259 ~~~Al~~~-~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 259 FKLALANN-VYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHhC-CchHHHHHHHHHHHHHHHh
Confidence 99999742 4588888887776665544
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=3.3e-09 Score=99.40 Aligned_cols=305 Identities=15% Similarity=0.078 Sum_probs=139.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 009255 88 NGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKE---- 163 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 163 (539)
..+...|++++|++.+++-... +.............+.+.|+.++|..+|..+.+.+. .+..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 4445666777777666654432 222233444555666666666666666666666532 1333333333333111
Q ss_pred -CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHH
Q 009255 164 -GKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNM-EEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYM 241 (539)
Q Consensus 164 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 241 (539)
.+.+...++++.+.+. -|.......+.-.+.....+ ..+..++..+...|+++ ++..+-..|.......-...
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2345555566655544 23333222222222221122 23334444555555432 23333333333333333333
Q ss_pred HHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 009255 242 LLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPST--FTYNAMIWGLSQSGKTEQAIDMLNELLQS 319 (539)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 319 (539)
++......--. .+...... ....-+|+. +++..+...|...|++++|++++++.+.+
T Consensus 165 l~~~~~~~l~~---------------~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 165 LVEEYVNSLES---------------NGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHhhcc---------------cCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 33322211000 00000000 000012232 23344455555666666666666666655
Q ss_pred CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---
Q 009255 320 GMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSV--- 396 (539)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 396 (539)
.+. .+..|..-...+-+.|++.+|.+.++.+..... -|..+-+..+..+.+.|++++|.+++..+...+..|...
T Consensus 224 tPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~ 301 (517)
T PF12569_consen 224 TPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLND 301 (517)
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHH
Confidence 322 344555555666666666666666666665542 255555555666666666666666666655543322111
Q ss_pred ---hH--HHHHHHHHccCChHHHHHHHHHHH
Q 009255 397 ---TY--NTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 397 ---~~--~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
.| ...+.+|.+.|++..|+..|....
T Consensus 302 mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 302 MQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 233455566666666655554443
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=5.1e-10 Score=92.19 Aligned_cols=430 Identities=15% Similarity=0.116 Sum_probs=263.9
Q ss_pred CCCCCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 009255 1 MEGFGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV 80 (539)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (539)
|-..|......-+++++..+.+..++.+|++++..-.++. +.+....+.+..+|-+..++..|-+.++++...- |..
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~ 77 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PEL 77 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHH
Confidence 5566776666778899999999999999999999988885 4478889999999999999999999999998763 333
Q ss_pred hhHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009255 81 WTYNM-LINGWCNAGMLEEAFRLRKEMESLKLLPDVVT--YNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMI 157 (539)
Q Consensus 81 ~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (539)
.-|.. -...+.+.+.+..|+++...|... ++... ...-..+....+++..+..+.++....| +..+.+...
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~g 151 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLG 151 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccch
Confidence 33332 235566889999999999988753 22222 2222233456788888888888876432 455555566
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH----HHHHHHHhcc
Q 009255 158 KWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITL----NTILHTLCCE 233 (539)
Q Consensus 158 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 233 (539)
-...+.|+++.|.+-|+...+.+--.....|+ +.-+..+.|+++.|++...+++++|++..+..- ...+.+- ..
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-sv 229 (459)
T KOG4340|consen 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SV 229 (459)
T ss_pred heeeccccHHHHHHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cc
Confidence 66778999999999999988754333344555 444566789999999999999988765332210 0000000 00
Q ss_pred CCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 009255 234 KKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQ-IMPSTFTYNAMIWGLSQSGKTEQAIDM 312 (539)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 312 (539)
|+ -..+.... -...++.-...+.+.++.+.|.+.+.+|..+. ...|+.|...+.-.-. .+++-....-
T Consensus 230 gN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~K 298 (459)
T KOG4340|consen 230 GN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEK 298 (459)
T ss_pred cc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHH
Confidence 00 00000000 12234444456678899999999888875432 2235666554433222 3445555555
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 313 LNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK-PDIVTCNILLSGLCREGILEKALKFFRSWILKGK 391 (539)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 391 (539)
+.-+....+. ...||..++-.|++..-++.|-+++.+-...... .+...|+.+-..-...-..++|.+-++.+... .
T Consensus 299 LqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l 376 (459)
T KOG4340|consen 299 LQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-L 376 (459)
T ss_pred HHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-H
Confidence 5555555443 4678888888999998888888887654332111 13333433322223345677777766655432 0
Q ss_pred CCChhhHHHHHHH--HHccCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 392 AVDSVTYNTLISS--LCKERRLE---DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 392 ~~~~~~~~~l~~~--~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
....-...+.. -...++-. .+++-+++..+. -..+...-++.+++..++..+.+.|...++..
T Consensus 377 --~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC 444 (459)
T KOG4340|consen 377 --TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFC 444 (459)
T ss_pred --HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhh
Confidence 00001111111 11122211 122223333221 12344455667888999999999999988765
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.43 E-value=1.8e-10 Score=108.58 Aligned_cols=271 Identities=15% Similarity=0.157 Sum_probs=124.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009255 31 DLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLK 110 (539)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (539)
.++..+...|+.|+..+|..++.-|+..|+.+.|- +|.-|.....+.+...|+.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 34455555566666666666666666666666655 6666655544445555666666555555555443
Q ss_pred CCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCCChhhHH
Q 009255 111 LLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEE-NGFSPDCVTYN 189 (539)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 189 (539)
.|...+|..|..+|...|+... |+...+ ....+...+...|--.....++..+.- .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 3555566666666666665544 211111 111222333344444433344333211 11122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHcc
Q 009255 190 TLIDANCKAGNMEEAFRMMDVMGRKG-LKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRD 268 (539)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (539)
..+....-.|-++.+++++..+.... ..|.. .+++-+.. +..-.+++........-.+++.++.+++..-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p~~----vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQ----VFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccchHH----HHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 23333344455555555554433211 01110 11222111 1112222222222211134555555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc
Q 009255 269 EKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS 337 (539)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 337 (539)
|+.+.|..++.+|.+.|++.+..-|-.++-+ .++...+..++.-|.+.|+.|+..|+...+-.+..
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 5555555555555555555444433333333 44555555555555555555555555544444444
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.1e-09 Score=86.98 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=166.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 009255 257 SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFC 336 (539)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (539)
....|...|.+.|+...|..-+++.++.++. +..+|..+...|.+.|..+.|.+.|++.....+. +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4456777899999999999999999988665 6788899999999999999999999999887543 6677888888889
Q ss_pred cCCCHHHHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 009255 337 SEGQVEKALQFHNKMVEKSF-KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAF 415 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 415 (539)
..|.+++|...|+....... ..-..+|..+.-+..+.|+++.|...|++.++.... .+.....+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999987642 223557888888888999999999999999987443 5667788888899999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 416 GLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+++.....+ .++..++...++.-...||-+.+.++=.++.+..
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999988765 4888888888888888999998888877777776
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=1.1e-09 Score=101.19 Aligned_cols=240 Identities=18% Similarity=0.176 Sum_probs=165.8
Q ss_pred HHhHHHHHHHHhccCCHHHHHHHHHHHhhc-----C--CccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC
Q 009255 220 TITLNTILHTLCCEKKLDEAYMLLNSASKR-----G--YYLDEVSYGTLITGYFRDEKANRALKLWDEMKER-----QIM 287 (539)
Q Consensus 220 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~ 287 (539)
..+...+...|...|+++.|..+++..... | .+.-....+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455666666666666666666655443 1 1111123344667788888888888888887642 111
Q ss_pred -C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCCH-HhHHHHHHHHhcCCCHHHHHHHHHHHHhC---C
Q 009255 288 -P-STFTYNAMIWGLSQSGKTEQAIDMLNELLQS-----GM-IPDE-TTFNTIIHGFCSEGQVEKALQFHNKMVEK---S 355 (539)
Q Consensus 288 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 355 (539)
| -..+++.|..+|.+.|++++|...++++.+- +. .|.. ..++.+...|...++++.|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1 2346777778899999999888888876532 11 1222 24566777888899999999988876642 1
Q ss_pred CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 356 FKP----DIVTCNILLSGLCREGILEKALKFFRSWILK----GK--AV-DSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 356 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
+.+ -..++..+...|...|++++|.+++++++.. +. .+ ....++.+...|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 112 2458889999999999999999999988754 11 11 1346788999999999999999998876532
Q ss_pred ----CC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 425 ----KL-GPD-RYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 425 ----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
|. .|+ ..+|..|+.+|...|+++.|.++.+.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 21 233 467889999999999999999999988743
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.34 E-value=2.9e-09 Score=94.45 Aligned_cols=218 Identities=12% Similarity=-0.011 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHhhcCC---ccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 009255 234 KKLDEAYMLLNSASKRGY---YLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAI 310 (539)
Q Consensus 234 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (539)
+..+.++.-+.+++.... ......|..+...|...|+.+.|...|++..+..+. +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 344555555555554321 112345667777888888899998888888887654 6788888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 311 DMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKG 390 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 390 (539)
..|++..+..+. +...+..+..++...|++++|.+.++...+.. |+..........+...+++++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999988876433 45667777788888899999999999888764 332212222223445678999999997655432
Q ss_pred CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC---C--CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 391 KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK---K--LGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 391 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.|+. |. ........|+...+ +.++.+.+. . +.| ...+|..++.++...|++++|+..|+++++.+
T Consensus 196 -~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222 22 12233345555444 344444422 1 111 23578888999999999999999999999887
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=1.6e-08 Score=96.94 Aligned_cols=438 Identities=12% Similarity=0.020 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSL-PDVWTYNMLING 89 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 89 (539)
..|..|...|....+...|.+.|+...+.+ +.+......+...|+...+++.|..+.-...+..+. .-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 357777777777777788888888887775 446667778888888888888887773333222111 111223334445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHhH
Q 009255 90 WCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNA-VTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 90 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 168 (539)
|.+.++...++.-|+...... +.|...|..++.+|...|++..|+++|.++... .|+. ..--.....-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 667778888888888877754 457778889999999999999999999887664 3322 122222334567788888
Q ss_pred HHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh-------hCCCCCCHHhHHHHHHHHh---c
Q 009255 169 ACKIVRNMEENG------FSPDCVTYNTLIDANCKAGNMEEAFRMMDVMG-------RKGLKMNTITLNTILHTLC---C 232 (539)
Q Consensus 169 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~---~ 232 (539)
+.+.+....... ...-..++..+...+...|-..++.+++++.+ ......+...+..+..+|. .
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 888887765421 01112233333333334444444444444322 1111112222211111111 1
Q ss_pred cC-CH--HHHHHHH-HHHhhcCC--------------------ccCHhhHHHHHHHHHc--------cCCHHHHHHHHHH
Q 009255 233 EK-KL--DEAYMLL-NSASKRGY--------------------YLDEVSYGTLITGYFR--------DEKANRALKLWDE 280 (539)
Q Consensus 233 ~~-~~--~~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~ 280 (539)
.. ++ .....++ .+....+. ..+...|..++..|.+ ..+...|+..+.+
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 00 0000011 11111111 1123334444443332 1223456777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH
Q 009255 281 MKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDI 360 (539)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 360 (539)
.++..-. +..+|+.|.-. ...|++.-+...|-+.....+ ....+|..+.-.+....+++.|...|....... +.+.
T Consensus 809 aV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 6654333 66777777665 555777777777766655433 356677777777888889999999999888764 2355
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC---------CCC
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWIL----KGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK---------KLG 427 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~ 427 (539)
..|..........|+.-++..+|..-.+ .|..++..-|..........|+.++-+...+.+... +.+
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 5555555555567777777777765221 233444444444444455666666655544443321 323
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 428 PDRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 428 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
.+...|...+...-..+.+.+|.+...+.
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33455666665666666666665555443
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.8e-11 Score=75.28 Aligned_cols=50 Identities=50% Similarity=0.914 Sum_probs=42.6
Q ss_pred cChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 009255 8 PDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCK 57 (539)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (539)
||+.+||.+|.+|.+.|++++|.++|++|.+.|++||..+|+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888764
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=2.7e-08 Score=82.28 Aligned_cols=428 Identities=12% Similarity=0.073 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH-HHH
Q 009255 45 RTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNT-LIN 123 (539)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~ 123 (539)
..-+.+.+..+++..+++.|++++..-.++.++ +....+.+..+|....++..|-..++++... .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 334667777778888888888888877776543 6667778888888888888888888888764 355544433 346
Q ss_pred HHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 009255 124 RFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMI--KWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNM 201 (539)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 201 (539)
.+.+.+.+..|+++...|... |+...-..-+ ......+++-.+..++++....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 667778888888888777653 2222211112 22335677778887777765432 334444444455678888
Q ss_pred HHHHHHHHHHhhC-CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHH----HHHHHHccCCHHHHHH
Q 009255 202 EEAFRMMDVMGRK-GLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGT----LITGYFRDEKANRALK 276 (539)
Q Consensus 202 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~ 276 (539)
+.|++-|+...+- |..| ...|+.. -+..+.++.+.|++...+++++|+...+..--. .+..-. .|+ -+.
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHH
Confidence 8888888877664 3432 3334433 345567888888888888888876543332100 000000 000 000
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 009255 277 LWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQS-GMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS 355 (539)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (539)
+- .. .-...+|.-...+.+.++.+.|.+.+..|.-. .-..|+.|...+.-. -..+++....+-+.-++..+
T Consensus 235 lh----~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 LH----QS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred HH----HH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00 00 01123444445567889999999888877532 223466666655422 23455666666667677665
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCCCHhhH
Q 009255 356 FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKA-VDSVTYNTLISSLC-KERRLEDAFGLLSEMEEKKLGPDRYTY 433 (539)
Q Consensus 356 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~ 433 (539)
+ -..++|..++-.|++..-++-|..++-+-...... .++..|+ |+.++. ..-..++|.+-+..+...- .......
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRkl 383 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKL 383 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3 45678888999999999999998887553221110 1222333 334443 3446777777666554210 0000000
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 434 AAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 434 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..-+.--...++ ...+++-|+..++.. -| .....++.|++..++..+.+.|..-.+
T Consensus 384 Ai~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y------------------LP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 384 AIQVQEARHNRDDEAIRKAVNEYDETLEKY------------------LP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHH------------------HH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 011111111121 223344444444443 12 344457778999999999999999886
Q ss_pred cCCCCCHHHHH
Q 009255 511 KGIAINKSTYM 521 (539)
Q Consensus 511 ~~~~p~~~~~~ 521 (539)
+..+..+|.
T Consensus 443 --fC~ehd~Wk 451 (459)
T KOG4340|consen 443 --FCNDHDVWK 451 (459)
T ss_pred --hhcccceee
Confidence 456666664
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5.9e-09 Score=94.18 Aligned_cols=244 Identities=12% Similarity=0.116 Sum_probs=179.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH
Q 009255 262 ITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV 341 (539)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (539)
..-+.+.|++.+|.-.|+..+..++. +...|..|.......++-..|+..+.+.++..+. +......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34456788899999999988887665 7788999998888999989999999988886543 667777788888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHH-----HH--HHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHHHHHHccCChHH
Q 009255 342 EKALQFHNKMVEKSFKPDIVTCNI-----LL--SGLCREGILEKALKFFRSWI-LKGKAVDSVTYNTLISSLCKERRLED 413 (539)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~-----l~--~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 413 (539)
..|...++..+...++ -...-.. .. ..+.....+....++|-++. ..+..+|+.+...|...|.-.|++++
T Consensus 370 ~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8899888888664321 0000000 00 00011112333444444443 34444788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHH
Q 009255 414 AFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINE 491 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 491 (539)
|+..|+.++.. .|+ ...|+.|+..+....+.++|+..|.++++.. |+.+ ++++|+-.
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-------------------P~yVR~RyNlgIS 507 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-------------------PGYVRVRYNLGIS 507 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-------------------CCeeeeehhhhhh
Confidence 99999999965 555 5778899999999999999999999999986 8888 99999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcC---C------CCCHHHHHHHHHHHHh
Q 009255 492 HCSQGRYKDALQIFEETRQKG---I------AINKSTYMNLMNGLIK 529 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~~---~------~p~~~~~~~~l~~~~~ 529 (539)
|...|.+++|...|-+++... . .++..+|..+-.++.-
T Consensus 508 ~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~ 554 (579)
T KOG1125|consen 508 CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSA 554 (579)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHH
Confidence 999999999999998876521 1 1234466666555543
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=2.4e-07 Score=78.41 Aligned_cols=308 Identities=14% Similarity=0.105 Sum_probs=144.8
Q ss_pred HHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHhHHHHHHHHHHHcCCCCChhh-HHHHHHHH
Q 009255 120 TLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIM---IKWYCKEGKIDKACKIVRNMEENGFSPDCVT-YNTLIDAN 195 (539)
Q Consensus 120 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 195 (539)
-+...+...|++..|+.-|...++. |+..|..+ ...|...|+...|+.-+.+.++. .||-.. ...-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 3444455555555565555555543 22223222 33455555555555555555543 344321 11223344
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHH
Q 009255 196 CKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRAL 275 (539)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (539)
.+.|.+++|..=|+.+.+.. |+..+. ..++.+.-..++-+ .....+..+...|+...|+
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHH
Confidence 55666666666666555542 111110 00010000000000 1111222334445555555
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC
Q 009255 276 KLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS 355 (539)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 355 (539)
.....+++..+- |...+..=..+|...|++..|+.=++...+... .+...+..+-..+...|+.+.++...++.++.
T Consensus 176 ~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl- 252 (504)
T KOG0624|consen 176 EMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL- 252 (504)
T ss_pred HHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence 555555554332 444444445555555555555555544443322 13333444444455555555555555555543
Q ss_pred CCCCHHhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHcCCCCChh---hHHHHHHHHHccCChHHHHHHHH
Q 009255 356 FKPDIVTCNIL-------------LSGLCREGILEKALKFFRSWILKGKAVDSV---TYNTLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 356 ~~~~~~~~~~l-------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~ 419 (539)
.|+....... +......++|.++....+...+..+..... .+..+-.++...+++.+|++...
T Consensus 253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 2332211110 111223455555555555555542221111 23344455566667777777777
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 420 EMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 420 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.++ +.|+ ..++.--+.+|.-...++.|+.-|+++.+.+
T Consensus 332 evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7664 3444 5666666667776677777777777777765
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.23 E-value=1.4e-07 Score=87.38 Aligned_cols=210 Identities=13% Similarity=0.140 Sum_probs=115.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CCCH--HhHHHHHH
Q 009255 292 TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSF-KPDI--VTCNILLS 368 (539)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~ 368 (539)
....+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++...... .++. ..+..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344555666777777777777777665432 445566666777777777777777777665422 1222 23445667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-CChhhH-H--HHHHHHHccCChHHHHHH--HHHHHhCCCCCC--HhhHHHHHHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKA-VDSVTY-N--TLISSLCKERRLEDAFGL--LSEMEEKKLGPD--RYTYAAIHTAL 440 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~~~~~~A~~~--~~~~~~~~~~~~--~~~~~~l~~~~ 440 (539)
.+...|++++|..++++....... +..... + .++.-+...|..+.+... +........+.. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 777778888888888776543211 111111 1 222223333432222222 111111110111 11122456677
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 441 VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
...|+.++|.+.++.+........ ...............+-++...|++++|.+.+.+++..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~---------~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSAD---------DNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccC---------chhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888999999999988866431100 00000112224455566778999999999999998863
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=1.1e-06 Score=74.58 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHH
Q 009255 195 NCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRA 274 (539)
Q Consensus 195 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 274 (539)
+...|+...|+.....+.+.. +.|...+..-..+|...|+...|+.=++...+.... +...+..+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHH
Confidence 344566666666666665542 345555555566666666666666555555544322 334444445555556666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 009255 275 LKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK 354 (539)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (539)
+...++.++.+ ||.. .+...|+++.+. . ..+ .-+......++|.++.+..+..++.
T Consensus 243 L~~iRECLKld--pdHK----------------~Cf~~YKklkKv--~---K~l-es~e~~ie~~~~t~cle~ge~vlk~ 298 (504)
T KOG0624|consen 243 LKEIRECLKLD--PDHK----------------LCFPFYKKLKKV--V---KSL-ESAEQAIEEKHWTECLEAGEKVLKN 298 (504)
T ss_pred HHHHHHHHccC--cchh----------------hHHHHHHHHHHH--H---HHH-HHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 66555555542 2221 111111111110 0 000 0011223456666666666666665
Q ss_pred CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 355 SFKPD---IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 355 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
..... ...+..+-.++...|++.+|++...++++.. +.|+.++..-..+|.-...|+.|+.-|+.+.+.
T Consensus 299 ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 299 EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 32211 2233344455566677777777777777652 224667777777777777777787777777754
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.21 E-value=2.1e-07 Score=86.25 Aligned_cols=200 Identities=12% Similarity=0.022 Sum_probs=125.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGL-VPNR-TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
..|..+...+...|+.+.+...+........ .++. .........+...|++++|.++++......+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 3456666666677888887777776665432 1122 22333344566788999999999888876433 3333332 22
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009255 89 GWCN----AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEG 164 (539)
Q Consensus 89 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (539)
.+.. .+....+.+.+.... ...+........+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 2222 344445555544411 1112223344455667788888888988888888764 335667777888888888
Q ss_pred CHhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 165 KIDKACKIVRNMEENGF-SPDC--VTYNTLIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 165 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888776421 1222 23456777888888888888888887543
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=2.5e-07 Score=89.20 Aligned_cols=474 Identities=11% Similarity=-0.001 Sum_probs=280.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 009255 15 TILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAG 94 (539)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (539)
..+..|.+. +...|...|-+..+..+ .=...|..|+..|....+..+|.+.|...-+.+.. +..........|++..
T Consensus 464 w~a~~~~rK-~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~ 540 (1238)
T KOG1127|consen 464 WVALGCMRK-NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEES 540 (1238)
T ss_pred HHHHHHhhh-hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccc
Confidence 344455444 37778888877777653 23458899999999888999999999999887543 6677888899999999
Q ss_pred ChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 009255 95 MLEEAFRLRKEMESLK-LLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIV 173 (539)
Q Consensus 95 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 173 (539)
+++.|..+.-...+.. ...-...|..+.-.|...++...++.-|+......++ |...|..++.+|...|++..|.++|
T Consensus 541 ~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF 619 (1238)
T KOG1127|consen 541 TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVF 619 (1238)
T ss_pred cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhh
Confidence 9999998844433321 0111233445566677889999999999998887544 8889999999999999999999999
Q ss_pred HHHHHcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 009255 174 RNMEENGFSPDCV-TYNTLIDANCKAGNMEEAFRMMDVMGRKG------LKMNTITLNTILHTLCCEKKLDEAYMLLNSA 246 (539)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (539)
.+.... .|+.. .-.......+..|.+.+++..+....... ..--..++..+...+...|-...+...++..
T Consensus 620 ~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 620 TKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 988775 34432 22223334567899999999888775421 1111222333333333333333333333322
Q ss_pred h-------hcCCccCHhhHHHHHHHH-------------------H----ccCCH---H---HHHHHHHHHHHcCCCCCH
Q 009255 247 S-------KRGYYLDEVSYGTLITGY-------------------F----RDEKA---N---RALKLWDEMKERQIMPST 290 (539)
Q Consensus 247 ~-------~~~~~~~~~~~~~l~~~~-------------------~----~~~~~---~---~a~~~~~~~~~~~~~~~~ 290 (539)
+ ......+...|..+..++ . ..+.. + -+.+.+-.-+ ....+.
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~ 775 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHM 775 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhcc
Confidence 1 111111111111111111 1 11111 1 0111111000 111123
Q ss_pred hhHHHHHHHHHc-------C-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHh
Q 009255 291 FTYNAMIWGLSQ-------S-GKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVT 362 (539)
Q Consensus 291 ~~~~~l~~~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 362 (539)
.+|..++..|.+ . .+...|+..+.+.++.. ..+..+++.+. .....|.+.-+...|-+.+... +....+
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~se-p~~~~~ 852 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRFSE-PTCHCQ 852 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcc-ccchhh
Confidence 344444433322 1 22346677777766542 22445555544 3466677777777776666553 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCCHhhHHHHHH
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEE----KKLGPDRYTYAAIHT 438 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~ 438 (539)
|..+.-.+.+..+++.|...|.......+. |...|..........|+.-++..+|..--. .|-.|+...+.....
T Consensus 853 W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te 931 (1238)
T KOG1127|consen 853 WLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATE 931 (1238)
T ss_pred eeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHH
Confidence 777777788888999999999888776433 666777666666677888888887776221 133444444444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
.....|+.++-+...+++........ .-..+ .|+.. +|...+...-..+.+.+|..+..+.+
T Consensus 932 ~h~~Ng~~e~~I~t~~ki~sAs~al~--------~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 932 IHLQNGNIEESINTARKISSASLALS--------YYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHhccchHHHHHHhhhhhhhHHHHH--------HHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55566766665444333321110000 00011 25544 88888888889999999999888865
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.2e-08 Score=88.73 Aligned_cols=414 Identities=16% Similarity=0.124 Sum_probs=234.5
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhccCCH
Q 009255 53 SGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPD-VVTYNTLINRFFESGRS 131 (539)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 131 (539)
.+.+..|+++.|...|...+...+. +-..|+.-..+|...|++++|++=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 4456778888888888888877554 7777888888888888888887766666654 455 34677888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHH-----HHHHHhcCCHHHHHH
Q 009255 132 MEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTL-----IDANCKAGNMEEAFR 206 (539)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~ 206 (539)
++|+..|.+-++... .+...+.-+..++ ..+.+. +.. --++..|..+ .+.+.....+...++
T Consensus 87 ~eA~~ay~~GL~~d~-~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDP-SNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcCC-chHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 888888888776522 2455555555555 111111 111 0112222211 122222222222222
Q ss_pred HHHHHhhCCCCCCHHhH---HHHHHHHhccCCHHHHHHHHHHHhhcCCcc-----CHhhHHHHHHHHHccCCHHHHHHHH
Q 009255 207 MMDVMGRKGLKMNTITL---NTILHTLCCEKKLDEAYMLLNSASKRGYYL-----DEVSYGTLITGYFRDEKANRALKLW 278 (539)
Q Consensus 207 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (539)
.+ .+. +.+...+ ..++.+.......+.- .....+..+ .+. .......-..++..+-.+
T Consensus 154 ~~---~~~--p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~--~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 II---QKN--PTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPC--KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred Hh---hcC--cHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcc--cccCCCCCccchhHHHHH--
Confidence 22 111 0000000 0111111100000000 000001000 000 000000000000000000
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC
Q 009255 279 DEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP 358 (539)
Q Consensus 279 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 358 (539)
. ..-..-...+..+..+..+++.+++-+....+.. .+..-++....++...|.+..+...-....+.|..
T Consensus 220 ---~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre- 289 (539)
T KOG0548|consen 220 ---V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE- 289 (539)
T ss_pred ---H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-
Confidence 0 0012234556777777888999999998888764 35556677777888888888877777776665422
Q ss_pred CHHhH-------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-
Q 009255 359 DIVTC-------NILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR- 430 (539)
Q Consensus 359 ~~~~~-------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~- 430 (539)
...-+ ..+..+|.+.++++.|+..+++.......|+. ..+....+++........- +.|..
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A 358 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKA 358 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHH
Confidence 22222 22444666778899999999887765333221 2233445666665555442 34543
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
.-...-+..+.+.|++..|++.|.+++..+ |+.. .|.+.+.+|.+.|.+..|++-.+..+
T Consensus 359 ~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-------------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 359 EEEREKGNEAFKKGDYPEAVKHYTEAIKRD-------------------PEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-------------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 223344778889999999999999999997 5554 99999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCchhhcc
Q 009255 510 QKGIAINKSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 510 ~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
+ +.|+...-..--+.++..-++|.+|.
T Consensus 420 e--L~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548|consen 420 E--LDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred h--cCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 57776544333345555555566654
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=6.1e-11 Score=72.95 Aligned_cols=47 Identities=43% Similarity=0.759 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 149 NAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDAN 195 (539)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (539)
|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444443
No 96
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.2e-06 Score=84.69 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQG------LVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+..+.+.|.+.|-+..|++.+..+..-. ...++. - +..|.-.-.++.+.+.+..|...+...+..+...+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE---w-Lv~yFg~lsve~s~eclkaml~~NirqNlQi~VQv 684 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE---W-LVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQV 684 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH---H-HHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5677888888898888887776654321 001111 1 12233444677888888888877777676666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-----------CCCCChhhHHHHHHHHhccCCHhHHHHHHHH
Q 009255 87 INGWCNAGMLEEAFRLRKEMESL-----------KLLPDVVTYNTLINRFFESGRSMEAFKLIDE 140 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 140 (539)
..-|..+=-.+..+++|+..... ++..|+.+....|.+.++.|++.+..++.++
T Consensus 685 atky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 685 ATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 66666555555666666655432 2455666777778888888888887776644
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.8e-06 Score=81.72 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=107.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------C-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQG--------L-VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV 80 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (539)
...|..+...|.+.++.+-|.-.+..|.... . .++ .+-..........|-.++|+.++.+..+.
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 3466777777777776666665555544321 0 111 11122223334566777777777766542
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHH----------hCC-----
Q 009255 81 WTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELD----------EHG----- 145 (539)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~----- 145 (539)
..|=..|-..|.+++|+++-+.-....+ ..||......+-..++.+.|++.|++.- ...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 2233445556777777766554333221 2355555555666677777777776531 110
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 009255 146 ----IKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTI 221 (539)
Q Consensus 146 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 221 (539)
-..|...|.......-..|+.+.|+.+|..... |.++++..+-.|+.++|-++-++- -|..
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~A 968 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKA 968 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHH
Confidence 112444555555555667777777777766543 233344444444444444443331 1333
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHH
Q 009255 222 TLNTILHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 222 ~~~~l~~~~~~~~~~~~a~~~~~~ 245 (539)
....+.+.|...|++.+|...|.+
T Consensus 969 AcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 969 ACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344445555555555555554443
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.9e-07 Score=88.07 Aligned_cols=250 Identities=17% Similarity=0.163 Sum_probs=114.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
++..|......+-..|+.+.|+.+|..... |..++...+-+|+.++|-.+-++ . -|......+.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHH
Confidence 334444444445556666666666654432 33444555556666666555443 1 14444455666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCC--CC--CCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc
Q 009255 334 GFCSEGQVEKALQFHNKMVEKS--FK--PDIVTCNILLSGLCR--EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK 407 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 407 (539)
.|...|++.+|..+|.++.... +. .....-..|...+.. ..+.-.|.++|++.- .-+...+..|.+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g--------~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELG--------GYAHKAVMLYHK 1047 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc--------hhhhHHHHHHHh
Confidence 6777777777776666553210 00 000001112222211 122333334443311 112223344555
Q ss_pred cCChHHHHHHHHH--------HHhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCcccc
Q 009255 408 ERRLEDAFGLLSE--------MEEKKLG--PDRYTYAAIHTALVESGRLEEAQKFTSIMVETG----------KINHQVV 467 (539)
Q Consensus 408 ~~~~~~A~~~~~~--------~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~ 467 (539)
+|.+.+|+++--+ ++..++. .|+..+.....-+....++++|..++-.+.+.. ...-..+
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~ 1127 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEF 1127 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 5665555554221 1111222 234444455555555555666555443332211 0000000
Q ss_pred cCCCCCCCCCCCCChh---hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhh
Q 009255 468 QPNTSKTPEEIDPSSI---SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 468 ~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 536 (539)
........-+.+|... ..-.++..+.++|.|..|-+-|.++=+ =...+.+++++|+ .++
T Consensus 1128 aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---------Kl~AMraLLKSGd-t~K 1189 (1416)
T KOG3617|consen 1128 AELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---------KLSAMRALLKSGD-TQK 1189 (1416)
T ss_pred HHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---------HHHHHHHHHhcCC-cce
Confidence 0001111112222222 677889999999999999877766532 1245566777765 443
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.14 E-value=4.9e-07 Score=94.99 Aligned_cols=341 Identities=12% Similarity=0.007 Sum_probs=214.2
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------CCC--HHhHHHHHHHH
Q 009255 159 WYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGL------KMN--TITLNTILHTL 230 (539)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 230 (539)
.....|+++.+...++.+.......+..........+...|+++++...+......-. .+. ..........+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666542211112233334445556778999999999987754211 111 11222233455
Q ss_pred hccCCHHHHHHHHHHHhhcCCccCH----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHH
Q 009255 231 CCEKKLDEAYMLLNSASKRGYYLDE----VSYGTLITGYFRDEKANRALKLWDEMKERQI---MP--STFTYNAMIWGLS 301 (539)
Q Consensus 231 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 301 (539)
...|+++.|...++.........+. .....+...+...|++++|...+++...... .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6889999999999987763211121 2345566677889999999999988764211 11 1234455667788
Q ss_pred cCCCHHHHHHHHHHHHHC----CCC--C-CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC--CCC--CHHhHHHHHHHH
Q 009255 302 QSGKTEQAIDMLNELLQS----GMI--P-DETTFNTIIHGFCSEGQVEKALQFHNKMVEKS--FKP--DIVTCNILLSGL 370 (539)
Q Consensus 302 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 370 (539)
..|+++.|...+++.... +.. + ....+..+...+...|+++.|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 211 1 12234445566777899999999998876531 112 233444566678
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ChhhH-----HHHHHHHHccCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 009255 371 CREGILEKALKFFRSWILKGKAV-DSVTY-----NTLISSLCKERRLEDAFGLLSEMEEKKLGPDR---YTYAAIHTALV 441 (539)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 441 (539)
...|+++.|...++++....... ....+ ...+..+...|+.+.|...+............ .....++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998876531111 11111 11223445578999999988776542111111 11345777888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKG 512 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 512 (539)
..|++++|...+++++..... .+..+.. .+...++.++.+.|+.++|.+.+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~-------------~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARS-------------LRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHH-------------hCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998875311 0001222 267788999999999999999999998854
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.1e-08 Score=90.74 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=193.8
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHH
Q 009255 228 HTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTE 307 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (539)
.-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+..+++.++.++. +......|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 3456788999999999999887533 6778888888899999999999999999988765 7888888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCH-------HhHHHHHHHHhcCCCHHHHHHHHHHH-HhCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 009255 308 QAIDMLNELLQSGMIPDE-------TTFNTIIHGFCSEGQVEKALQFHNKM-VEKSFKPDIVTCNILLSGLCREGILEKA 379 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A 379 (539)
.|++.++.-+...++--. ..+.. -..+..........++|-.+ ...+..+|+.+...|.-.|--.|++++|
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999999987664321000 00000 00111112233444444444 4455457888888998889999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 380 LKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
+..|+.++... +.|...||.|+..+....+..+|+..|+++++ +.|+ ..+...++-+|...|.+.+|.+.|-.++.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999874 33788999999999999999999999999996 4787 46677899999999999999999998887
Q ss_pred cCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 009255 459 TGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIF 505 (539)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 505 (539)
....+.. ......++..+|..|-.++...++.+-+.+..
T Consensus 527 mq~ks~~--------~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRN--------HNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccc--------cccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 6522100 00111123447888777777778877555543
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.12 E-value=7.8e-07 Score=93.48 Aligned_cols=337 Identities=12% Similarity=0.054 Sum_probs=212.1
Q ss_pred HHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCC------CCC--hhhHHHHHHHH
Q 009255 124 RFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGF------SPD--CVTYNTLIDAN 195 (539)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 195 (539)
.....|+++.+..+++.+.......++.........+...|+++++...+......-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666666542211111233334445556678999999999887754310 111 11222334456
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-----cCHhhHHHHHHHHH
Q 009255 196 CKAGNMEEAFRMMDVMGRKGLKMNT----ITLNTILHTLCCEKKLDEAYMLLNSASKRGYY-----LDEVSYGTLITGYF 266 (539)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~ 266 (539)
...|++++|...++.....-...+. .....+...+...|+++.|...+......... ........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6899999999999987663111121 23345556677899999999998887653111 11234455667788
Q ss_pred ccCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCC--CHHhHHHHHHHH
Q 009255 267 RDEKANRALKLWDEMKER----QIM--P-STFTYNAMIWGLSQSGKTEQAIDMLNELLQSG--MIP--DETTFNTIIHGF 335 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 335 (539)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 211 1 12334455666777899999999998875431 111 233444466677
Q ss_pred hcCCCHHHHHHHHHHHHhCC--CCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHH
Q 009255 336 CSEGQVEKALQFHNKMVEKS--FKPDIVT----CNILLSGLCREGILEKALKFFRSWILKGKAVDS---VTYNTLISSLC 406 (539)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 406 (539)
...|+++.|...+....... ....... ....+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 88999999999998875421 1111110 011224455689999999998775542111111 11346777888
Q ss_pred ccCChHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 407 KERRLEDAFGLLSEMEEK----KLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..|++++|...++++... +..++ ..+...++.++...|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999988753 22222 2456677788999999999999999999876
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.12 E-value=5.5e-09 Score=81.29 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=96.4
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 380 LKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
..++++.++. ++..+..++.++...|++++|...|+++.... +.+...+..++.++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666654 33346667888889999999999999988653 446778888999999999999999999999988
Q ss_pred CCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 460 GKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+ +.+...+..++.++...|++++|+..|+++++ +.|+...+....+
T Consensus 88 ~------------------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~ 133 (144)
T PRK15359 88 D------------------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQ 133 (144)
T ss_pred C------------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHH
Confidence 7 44555899999999999999999999999987 6788776665554
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.12 E-value=1.1e-08 Score=89.29 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=89.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----c
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR----E 373 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 373 (539)
..+...|++++|++++... .+.......++.+.+.++++.|.+.++.|.+.. .| .+...++.++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 3455567777776666431 245555666677777777777777777776542 22 333334443332 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL-EEAQKF 452 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~ 452 (539)
+.+.+|..+|+++.+. .++++.+.+.++.++...|++++|.+++.++...+ +-+..++..++-+....|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3577777777776554 44566677777777777777777777777776543 33455666666666666666 556667
Q ss_pred HHHHHHcC
Q 009255 453 TSIMVETG 460 (539)
Q Consensus 453 ~~~~~~~~ 460 (539)
+.++....
T Consensus 259 l~qL~~~~ 266 (290)
T PF04733_consen 259 LSQLKQSN 266 (290)
T ss_dssp HHHCHHHT
T ss_pred HHHHHHhC
Confidence 76666654
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=1.6e-06 Score=81.07 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=108.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGIL 376 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (539)
+.+......+.+|+.+++.++.+.. ...-|..+.+.|...|+++.|.++|-+. ..++..+.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445556677777777777766532 3345666777777778888777777543 1234556777788888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 377 EKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
++|.++-.+.. |+......|..-..-+-.+|++.+|.++|-.. | .|+. .+..|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 87777766543 22333445555555666777777777766543 2 4443 345667777777777665443
Q ss_pred HHcCCCCcccccCCCCCCCCCCCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 457 VETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
.|+.. +...++.-|-..|+..+|...|-++.
T Consensus 877 ----------------------h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 877 ----------------------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred ----------------------ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 23332 67778888888999999988887765
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-05 Score=77.59 Aligned_cols=334 Identities=14% Similarity=0.135 Sum_probs=178.1
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009255 32 LLSDMKKQGLV--PNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSL--PDVWTYNMLINGWCNAGMLEEAFRLRKEME 107 (539)
Q Consensus 32 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (539)
+.++..+.+++ .|+...+..+.++...+-..+.+++++++.-.+.. -+....+.|+-... .-+..+..++.+++.
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhc
Confidence 34444444332 35556666777777777777777777777643211 12222333333332 334455555555554
Q ss_pred hCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhh
Q 009255 108 SLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVT 187 (539)
Q Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 187 (539)
.-+ .|+ +...+..++-+++|..+|++... +....+.|+.- -+.++.|.+.-++.. .+..
T Consensus 1048 nyD-a~~------ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~v 1106 (1666)
T KOG0985|consen 1048 NYD-APD------IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAV 1106 (1666)
T ss_pred cCC-chh------HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHH
Confidence 432 122 23445556667777777766432 44444444432 345555555544432 3446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHc
Q 009255 188 YNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFR 267 (539)
Q Consensus 188 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 267 (539)
|..+..+-.+.|...+|++-|-+. .|+..|..++....+.|.+++-.+.+..+.+....| ..-..|+.+|.+
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHH
Confidence 777777777777777777666432 255667777777777777777777776666654332 233466777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHH
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQF 347 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 347 (539)
.++..+..+.+. .|+......+..-|...+.++.|.-+|... ..|..+...+...|+++.|.+.
T Consensus 1179 t~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred hchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 776665444331 245555555566666666666665555422 2344455555555555555543
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
-+++ .+..+|..+-.+|...+.+.-| ++....+.....-...++.-|-..|-+++-+.+++...
T Consensus 1243 aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1243 ARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3332 2445555555555544443322 12222222233334455556666666666666665544
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.08 E-value=9.1e-06 Score=73.51 Aligned_cols=410 Identities=10% Similarity=0.086 Sum_probs=238.4
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+-|+.+|+.||+-+..+ .++++++.++++... +|.++..|..-+..-.+.++++....+|.+++.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45889999999987666 999999999999987 5778889999999999999999999999999876 3467777777
Q ss_pred HHHHHh-cCChHH----HHHHHHHH-HhCCCCCC-hhhHHHHHHHH---------hccCCHhHHHHHHHHHHhCCCCCCH
Q 009255 87 INGWCN-AGMLEE----AFRLRKEM-ESLKLLPD-VVTYNTLINRF---------FESGRSMEAFKLIDELDEHGIKPNA 150 (539)
Q Consensus 87 ~~~~~~-~g~~~~----a~~~~~~~-~~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (539)
++--.+ .|+... ..+.|+-. .+.|+.+- -..|+..+..+ ..+.+.+...++|+++...-+.-=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 664332 233322 22333332 23343332 23355444332 3344566677788887654211111
Q ss_pred HHHHH------HH-----HHH--HhcCCHhHHHHHHHHHHH--cCCCCChhh---------------HHHHHHHHHhc--
Q 009255 151 VTHNI------MI-----KWY--CKEGKIDKACKIVRNMEE--NGFSPDCVT---------------YNTLIDANCKA-- 198 (539)
Q Consensus 151 ~~~~~------l~-----~~~--~~~g~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~-- 198 (539)
..|+- -+ +-+ -+...+..|.++++++.. .|......+ |..+|.---..
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11211 11 111 123346677777777654 232211111 32233211111
Q ss_pred ----CCH--HHHHHHHHHHh-hCCCCCCHHhHHHHH-------HHHhccCC-------HHHHHHHHHHHhhcCCccCHhh
Q 009255 199 ----GNM--EEAFRMMDVMG-RKGLKMNTITLNTIL-------HTLCCEKK-------LDEAYMLLNSASKRGYYLDEVS 257 (539)
Q Consensus 199 ----~~~--~~a~~~~~~~~-~~~~~~~~~~~~~l~-------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~ 257 (539)
|.. ....-.+++.. -.+..|+ .|.... ..+...|+ .+++..+++..+..-..-+..+
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~pe--iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPE--IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11111122211 1122222 222211 12222333 3445555555544322223333
Q ss_pred HHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHH
Q 009255 258 YGTLITGYFR---DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP-DETTFNTIIH 333 (539)
Q Consensus 258 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 333 (539)
|..+...--. .+..+.....+++++......-..+|..++....+..-...|..+|.++.+.+..+ +..+...++.
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 3333322111 11355556666666554322234567778888888888889999999988876665 4555666666
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCCh
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD--SVTYNTLISSLCKERRL 411 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 411 (539)
.++ .+|...|.++|+.-++. +..++.-....+.-+...++-..|..+|++....+..|+ ..+|..++.--..-|+.
T Consensus 411 y~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 554 57888899999877665 233445555667777788888889999999888755544 35888888888888998
Q ss_pred HHHHHHHHHHHhC
Q 009255 412 EDAFGLLSEMEEK 424 (539)
Q Consensus 412 ~~A~~~~~~~~~~ 424 (539)
..++++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777643
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=8.6e-09 Score=89.93 Aligned_cols=227 Identities=19% Similarity=0.172 Sum_probs=147.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHh
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP-DETTFNTIIHGFC 336 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 336 (539)
...+.+++...|+++.++. ++.... .|.......+...+...++-+.++.-+++.......+ +..........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3445566666666554332 222222 4555555555554444345555655555444333222 2233333345567
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----ccCChH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLC----KERRLE 412 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 412 (539)
..|+++.|++++... .+.+.....+.+|.+.++++.|.+.++.|.+. ..|. +...++.++. -.+.+.
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhHH
Confidence 789999998877643 36777788899999999999999999999875 3343 3334444433 234699
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEH 492 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 492 (539)
+|..+|+++.+. ..++..+++.++.++...|++++|.+.++++++.+ +-++.+..+++.+.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------------------~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------------------PNDPDTLANLIVCS 245 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------------cCCHHHHHHHHHHH
Confidence 999999998764 57888888889999999999999999999998776 33444888899888
Q ss_pred hhcCCH-HHHHHHHHHHHHcCCCCCHH
Q 009255 493 CSQGRY-KDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 493 ~~~g~~-~~A~~~~~~~~~~~~~p~~~ 518 (539)
...|+. +.+.+.+.++.. ..|+.+
T Consensus 246 ~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred HHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 889998 667788888876 356644
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=1.2e-07 Score=94.46 Aligned_cols=206 Identities=13% Similarity=0.060 Sum_probs=170.2
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPD-----ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTC 363 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 363 (539)
+...|-..+....+.++.++|.++.++++.. +.+. ...|..+++.-..-|.-+...++|+++.+. .....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 5678889999999999999999999998865 2221 235666666666677888899999999875 2245678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 009255 364 NILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTYAAIHTAL 440 (539)
Q Consensus 364 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 440 (539)
..|...|.+.+.+++|.++++.|.++ +......|..++..+.++++-+.|..+++++++. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 88999999999999999999999987 3357789999999999999999999999999875 333 34555666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 441 VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
.+.|+.+.++.+|+..+..+ |.....|+.+++.-.++|+.+.++.+|+|+++.++.|-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay------------------PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY------------------PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC------------------ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 88999999999999999988 4455699999999999999999999999999987777654
No 109
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.04 E-value=2.6e-06 Score=79.81 Aligned_cols=267 Identities=15% Similarity=0.117 Sum_probs=123.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCH
Q 009255 157 IKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKL 236 (539)
Q Consensus 157 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (539)
+.+......+.+|+.+++.+.... .....|..+..-|...|+++.|.++|-+. ..+...+.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445555666666666555432 22333445555566666666666666432 1234445556666666
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNEL 316 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 316 (539)
+.|.++-.+.... ......|-+-..-.-..|++.+|.++|-.+.. |+ ..|.+|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 6666555444321 22333344444444455555555555533221 22 1244555555555555555432
Q ss_pred HHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---------
Q 009255 317 LQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI--------- 387 (539)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------- 387 (539)
... .-..|-..+..-+...|+...|..-|-+.- -|.+.+++|...+-+++|.++-+.--
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~ 944 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVA 944 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHH
Confidence 211 112333444555556666666655443322 13334444555555555544432200
Q ss_pred -----HcCCCCCh------hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 388 -----LKGKAVDS------VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 388 -----~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
..|-..-+ .....-+...+..+-++-|..+-+-..+.. .| .+...+...+...|++++|-+.|-.+
T Consensus 945 flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~--~vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 945 FLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MG--EVHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cc--cchhHHhhhhhhccchhhhhHhhHHH
Confidence 00000000 011111222334444555555444333221 12 23334555566677777777777777
Q ss_pred HHcC
Q 009255 457 VETG 460 (539)
Q Consensus 457 ~~~~ 460 (539)
++.+
T Consensus 1022 ikln 1025 (1636)
T KOG3616|consen 1022 IKLN 1025 (1636)
T ss_pred hhcc
Confidence 7765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=6.7e-08 Score=79.58 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=108.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChH
Q 009255 333 HGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLE 412 (539)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 412 (539)
-.|...|+++.+....+.+... . ..+...++.+++...+++..... +.+...|..++..|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 4567777777765444332211 0 01223566777777788777764 347888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTAL-VESGR--LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKI 489 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (539)
+|...|+++.+.. +.+...+..++.++ ...|+ .++|.++++++++.+ +.+..++..++
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d------------------P~~~~al~~LA 151 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD------------------ANEVTALMLLA 151 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC------------------CCChhHHHHHH
Confidence 9999999888653 34567777777764 56676 589999999999887 33445888889
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 490 NEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
..+.+.|++++|+..|+++++. ..|+.
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l-~~~~~ 178 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL-NSPRV 178 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence 9999999999999999999874 24444
No 111
>PLN02789 farnesyltranstransferase
Probab=99.03 E-value=1.2e-06 Score=77.71 Aligned_cols=233 Identities=12% Similarity=0.084 Sum_probs=161.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH-
Q 009255 264 GYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSG-KTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV- 341 (539)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 341 (539)
.+...+..++|+.+..+++..++. +..+|+.-..++...| ++++++..++++.+..+. +..+|......+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchh
Confidence 344456778888888888876544 4556666666666666 578899999888876544 445565554445555553
Q ss_pred -HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CCh----HH
Q 009255 342 -EKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE---RRL----ED 413 (539)
Q Consensus 342 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~----~~ 413 (539)
+.+..+++.+++... -+..+|.....++...|+++++++.++++++.++. |...|+....++.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 677888888887753 47888888888888889999999999999988655 677888777666554 222 46
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHH
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVES----GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKI 489 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 489 (539)
.+....+++... +-|...|..+..++... ++..+|.+.+..+.... +.+..+...|+
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~------------------~~s~~al~~l~ 262 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD------------------SNHVFALSDLL 262 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc------------------CCcHHHHHHHH
Confidence 777777777653 44566777777777663 44567888888877654 24445888888
Q ss_pred HHHhhcC------------------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 490 NEHCSQG------------------RYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 490 ~~~~~~g------------------~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
+.|+... ..++|.++++.+. ...|=..-|-
T Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 263 DLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 9888642 3467888888874 2455444333
No 112
>PLN02789 farnesyltranstransferase
Probab=98.98 E-value=6.1e-07 Score=79.52 Aligned_cols=209 Identities=11% Similarity=0.049 Sum_probs=155.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC-CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG-QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGIL 376 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (539)
..+...++.++|+....++++..+. +..++..-..++...| ++++++..++++++.+. .+..+|.....++.+.|..
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 3444567889999999999886432 4445555555566666 67999999999998754 3666777666666667763
Q ss_pred --HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCH----H
Q 009255 377 --EKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES---GRL----E 447 (539)
Q Consensus 377 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~ 447 (539)
+++..+++++++.+.. |..+|+....++...|+++++++.+.++++.+ +-|..+|...+.++.+. |+. +
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHH
Confidence 6788999899887554 88899999999999999999999999999875 44566777766666554 323 5
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 448 EAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQ----GRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 448 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
++.++..+++... |-+..+|+.+..++... ++..+|.+.+.++++ ..|+..-...+
T Consensus 201 ~el~y~~~aI~~~------------------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~ 260 (320)
T PLN02789 201 SELKYTIDAILAN------------------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSD 260 (320)
T ss_pred HHHHHHHHHHHhC------------------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHH
Confidence 7888888999887 34445999999999883 456789999999876 46777666666
Q ss_pred HHHHHhc
Q 009255 524 MNGLIKR 530 (539)
Q Consensus 524 l~~~~~~ 530 (539)
+.-++..
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 6655544
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=1.7e-07 Score=80.89 Aligned_cols=186 Identities=11% Similarity=0.009 Sum_probs=117.9
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC-HHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCH---HhH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMI-PD-ETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDI---VTC 363 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 363 (539)
....+..++..+...|+++.|...++++....+. |. ...+..+..++...|+++.|...++.+++.... +. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 4556666677777778888888888777665322 11 134556667777778888888888877765321 11 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 009255 364 NILLSGLCRE--------GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAA 435 (539)
Q Consensus 364 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 435 (539)
..+..++... |+++.|.+.++++....+. +...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~-------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RL-------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HH-------HHHHHH
Confidence 4445555543 5677777777777665221 2222221111100 000 00 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 436 IHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 436 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
++..+...|++++|+..++.+++.... .|. ..++..++.++...|++++|...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPD----------------TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667788999999999999999998732 232 34899999999999999999999998875
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.92 E-value=3e-07 Score=75.18 Aligned_cols=184 Identities=14% Similarity=0.086 Sum_probs=143.6
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+... ..+-..+...|+-+....+........ +.+.......+....+.|++..|...+++.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3344 666777888888888888887765542 446777777889999999999999999999877 4568999999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
+|.+.|+++.|..-|.++.+.. .-+...++.++-.+.-.|+++.|..++....... +-+..
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------------------~ad~~ 203 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------------------AADSR 203 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC------------------CCchH
Confidence 9999999999999999999752 3345677888888999999999999999998875 23556
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRK 532 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 532 (539)
.-.+++.+....|+.++|..+...-.. .+.......++.+-....+
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~~---~~~~~~~~~~l~~~~~~~~ 249 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQELL---SEQAANNVAALRAAASQSG 249 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhcccccc---chhHhhHHHHHHHhhcccc
Confidence 888999999999999999998877652 3333444445554444433
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=8.8e-07 Score=86.75 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=106.4
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
..+...+..|..+..+.|.+++|..+++.+.+..+. +...+..++.++.+.+++++|+..+++..... +-+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 446777777888888888888888888888776222 44566777778888888888888888887653 3345566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAI 515 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 515 (539)
+.++.+.|++++|..+|++++..+ |+.. ++.+++..+...|+.++|...|+++++. ..|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-------------------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-------------------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCc
Confidence 777888888888888888888754 5544 7888888888888888888888888763 345
Q ss_pred CHHHHHHHHHH
Q 009255 516 NKSTYMNLMNG 526 (539)
Q Consensus 516 ~~~~~~~~l~~ 526 (539)
....+..++..
T Consensus 221 ~~~~~~~~~~~ 231 (694)
T PRK15179 221 GARKLTRRLVD 231 (694)
T ss_pred chHHHHHHHHH
Confidence 55555555443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=9.8e-07 Score=72.28 Aligned_cols=164 Identities=17% Similarity=0.127 Sum_probs=134.6
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
|... ..+-..+...|+-+....+........ ..+.......+....+.|++..|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4444 566677888888888888887765442 3355666668888899999999999999998875 679999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 369 GLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
+|.+.|+++.|..-|.+..+.. +.++...+.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999999999873 3377788999999999999999999999988653 4467777888889999999999
Q ss_pred HHHHHHHHH
Q 009255 449 AQKFTSIMV 457 (539)
Q Consensus 449 A~~~~~~~~ 457 (539)
|..+...-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 998775544
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1.9e-06 Score=80.62 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=126.7
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 116 VTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDAN 195 (539)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (539)
..-..+...+...|-..+|..+++++.. |.-.+.+|+..|+..+|..+..+..+. +|++..|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3344555666666667777776665532 444566666677777777666666553 56666666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHH
Q 009255 196 CKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRAL 275 (539)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 275 (539)
....-+++|.++.+..... .-..+.....+.++++++.+.++...+.+ +....+|..+..+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 5555566666666543221 11222222334566666666666655543 224455666666666666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009255 276 KLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVE 353 (539)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (539)
+.|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ ..+...+...+......|.+++|.+.+.++..
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 666666554332 45566666666666666666666666666655 22444455555555666666666666666553
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.88 E-value=1.7e-07 Score=72.96 Aligned_cols=109 Identities=10% Similarity=0.026 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 009255 346 QFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK 425 (539)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 425 (539)
.++++.++. .|+ .+..+..++...|++++|...|+......+ .+...|..++.++...|++++|+..|+++...+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555554 233 355567778888999999999988887743 377788888888999999999999999988753
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 426 LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.+...+..++.++...|++++|++.++.+++..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4456778888888889999999999999998886
No 119
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=2.5e-06 Score=85.51 Aligned_cols=205 Identities=13% Similarity=0.038 Sum_probs=125.6
Q ss_pred ChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH
Q 009255 114 DVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKP-----NAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTY 188 (539)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 188 (539)
+...|...|......++.+.|.++.++++.. +.+ -...|.+++..-..-|.-+...++|+++.+.. ..-..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3456666777777777777777777776543 211 12345555555555666666777777776641 223356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCc-cCHhhHHHHHHHHHc
Q 009255 189 NTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYY-LDEVSYGTLITGYFR 267 (539)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 267 (539)
..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.++.+-+.|..++.++.+.-.. -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 66777777777777777777777664 2235566677777777777777777777766654211 012233344445556
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 009255 268 DEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP 323 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 323 (539)
.|+.+++..+|+..+...+. -...|+.+++.-.+.|+.+.+..+|+++...++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 67777777777666655433 45667777777677777777777777666655543
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=4.4e-07 Score=84.72 Aligned_cols=217 Identities=12% Similarity=0.092 Sum_probs=169.0
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHG 334 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (539)
...-..+...+...|-...|..+|++. ..|..++.+|...|+..+|..+..+..+ -+|++..|..++..
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 344456777888888888999888754 4567788899999999999999888777 35788888888877
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +.-..+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 77766778888777665432 22233333345789999999999887763 23566888888888999999999
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHh
Q 009255 415 FGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHC 493 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 493 (539)
.+.|...... .|+ ...|+.+..+|.+.|+..+|...+.++++-+. .+...|-+......
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~------------------~~w~iWENymlvsv 598 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY------------------QHWQIWENYMLVSV 598 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC------------------CCCeeeechhhhhh
Confidence 9999998853 565 57899999999999999999999999998772 34447777788888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|.+++|++.+.++..
T Consensus 599 dvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 599 DVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999999999876
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.85 E-value=1.4e-07 Score=73.37 Aligned_cols=122 Identities=12% Similarity=0.116 Sum_probs=87.3
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 382 FFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGK 461 (539)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 461 (539)
.++++....+. +......++..+...|++++|...++++...+ +.+...+..++.++...|++++|..+++++++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 34455544222 34455667777788888888888888887653 4456677778888888888888888888888776
Q ss_pred CCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 462 INHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+.+...+..++.+|...|++++|...|+++++ +.|+...+..+..
T Consensus 82 -----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 -----------------PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred -----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHH
Confidence 34455788888888888888888888888887 4577666544433
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=6.8e-06 Score=67.43 Aligned_cols=265 Identities=15% Similarity=0.137 Sum_probs=161.4
Q ss_pred CCCCCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh
Q 009255 1 MEGFGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV 80 (539)
Q Consensus 1 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 80 (539)
|...+.-|+-+.|+. +-+.-.|++..++..-....... .+...-..+.++|...|.+.... ..+.... .|..
T Consensus 1 m~~~~~g~~d~LF~i--Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~l 72 (299)
T KOG3081|consen 1 MSSMEAGPEDELFNI--RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPL 72 (299)
T ss_pred CCccccCcchhHHHH--HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChH
Confidence 445555566566654 55666888888887776665442 35555566778888888765443 3333322 2334
Q ss_pred hhHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009255 81 WTYNMLINGWCNAGMLEEAF-RLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKW 159 (539)
Q Consensus 81 ~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (539)
..+..+......-++.+.-+ .+.+.+.......+......-...|++.+++++|++...... +......=...
T Consensus 73 qAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI 146 (299)
T KOG3081|consen 73 QAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQI 146 (299)
T ss_pred HHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHH
Confidence 44444444443344444433 344444444333333333344567788888999888876621 33344444556
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCC
Q 009255 160 YCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCK----AGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKK 235 (539)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (539)
+.+..+++-|...+++|.+. .+..+.+.|..++.+ .+.+..|.-+|++|..+ ..|++.+.+..+.++...++
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 66778888888888888874 355666767666653 34678888888888664 57788888888888888888
Q ss_pred HHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCH-HHHHHHHHHHHHc
Q 009255 236 LDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKA-NRALKLWDEMKER 284 (539)
Q Consensus 236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 284 (539)
+++|..+++.+...... ++.+...++..-...|.. +...+.+.++...
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 88888888888777544 455554444444444443 3334444444443
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=9.4e-07 Score=76.27 Aligned_cols=185 Identities=17% Similarity=0.110 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh--hhH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNR---TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDV--WTY 83 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 83 (539)
....+..++..+...|++++|...|+++.... |.++ .++..+..++...|++++|...++.+.+..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34456667777777888888888888777654 2222 35666777777888888888888877765432111 134
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHH
Q 009255 84 NMLINGWCNA--------GMLEEAFRLRKEMESLKLLPDV-VTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHN 154 (539)
Q Consensus 84 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 154 (539)
..+..++... |+.++|.+.|+.+.... |+. ..+..+..... . .... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~------~~~~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----L------RNRL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----H------HHHH--------HHHHH
Confidence 4444444443 56777777777776642 332 22222111100 0 0000 01112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 155 IMIKWYCKEGKIDKACKIVRNMEENGF--SPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 155 ~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
.+...+.+.|++++|...++...+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778899999999999999887521 123467888999999999999999999888764
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=1.5e-06 Score=71.74 Aligned_cols=120 Identities=9% Similarity=0.069 Sum_probs=88.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HccCC--hHHH
Q 009255 338 EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSL-CKERR--LEDA 414 (539)
Q Consensus 338 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A 414 (539)
.++.+++...++..++.+ +.+...|..+...|...|++++|...+++.....+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 556677777777777664 447778888888888888888888888888776433 666777777764 56666 4788
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 415 FGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++++++.+.+ +.+..++..++..+...|++++|+..|+++++..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888653 3356677777788888888888888888888876
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.0001 Score=67.01 Aligned_cols=410 Identities=12% Similarity=0.086 Sum_probs=244.0
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 42 VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTL 121 (539)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (539)
|.|..+|+.|++-+..+ ..+++++.++++...- +.....|..-|..-....+++....+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 77999999999987666 9999999999998752 336678999999999999999999999998765 3456667666
Q ss_pred HHHHhcc-CCHh----HHHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCCHhHHHHHHHHHHHcCCCCCh
Q 009255 122 INRFFES-GRSM----EAFKLIDELD-EHGIKP-NAVTHNIMIKW---------YCKEGKIDKACKIVRNMEENGFSPDC 185 (539)
Q Consensus 122 ~~~~~~~-~~~~----~a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~~~~~~~ 185 (539)
+.--.+. +... ...+.|+-.. +.|+.+ +...|+..+.. |....+++...++++++....+..=.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6533322 2222 2233344333 334322 22234433332 23344667777888887754211111
Q ss_pred hhHH------HHHHHH-------HhcCCHHHHHHHHHHHhh--CCCCCCHH------h---------HHHHHHHHhccCC
Q 009255 186 VTYN------TLIDAN-------CKAGNMEEAFRMMDVMGR--KGLKMNTI------T---------LNTILHTLCCEKK 235 (539)
Q Consensus 186 ~~~~------~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~------~---------~~~l~~~~~~~~~ 235 (539)
..|+ .-+... -+...+..|.++++++.. .|...... | |..++.- -+.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCC
Confidence 1222 111111 123456778888877643 22211111 1 1112211 11110
Q ss_pred HH---------HHHHHHHHHhh-cCCccCHhhHHHHH-------HHHHccCC-------HHHHHHHHHHHHHcCCCCCHh
Q 009255 236 LD---------EAYMLLNSASK-RGYYLDEVSYGTLI-------TGYFRDEK-------ANRALKLWDEMKERQIMPSTF 291 (539)
Q Consensus 236 ~~---------~a~~~~~~~~~-~~~~~~~~~~~~l~-------~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 291 (539)
.. ...-.+++... .+. .+..|..-. ..+...|+ .+++..+++.....-..-+..
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~--~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~ 329 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGY--HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKL 329 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11111222111 111 222221111 12223333 345556666554432222333
Q ss_pred hHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-CHHhHHHHH
Q 009255 292 TYNAMIWGLSQ---SGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP-DIVTCNILL 367 (539)
Q Consensus 292 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 367 (539)
+|..+...--. -+..+....+++++.......-.-+|...++...+..-...|+.+|.++.+.+..+ ++.+..+++
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 34333322111 12355666666666554222233467778888888888999999999999876555 667778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCC
Q 009255 368 SGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGR 445 (539)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 445 (539)
..|+ .++.+-|.++|+--... ...++.--...+.-+.+.|+-..+..+|++.+..+++|+ ..+|..++.--..-|+
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 8666 57889999999887766 333444556777888888999999999999998866766 4788888888888999
Q ss_pred HHHHHHHHHHHHHcC
Q 009255 446 LEEAQKFTSIMVETG 460 (539)
Q Consensus 446 ~~~A~~~~~~~~~~~ 460 (539)
...+.++-++.....
T Consensus 488 L~si~~lekR~~~af 502 (656)
T KOG1914|consen 488 LNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999888877665
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.73 E-value=1.1e-05 Score=80.07 Aligned_cols=238 Identities=10% Similarity=0.065 Sum_probs=119.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 009255 149 NAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDC-VTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTIL 227 (539)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 227 (539)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3456666777777777777777777765554 3333 2333333445555554443333 122
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHH
Q 009255 228 HTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTE 307 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (539)
.......++..+..+...+...+ -+...+..+..+|-+.|+.+++..+|+++++.++. ++.+.|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 22222233333333333333321 13345556666666666666666666666666533 566666666666666 666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 308 QAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 387 (539)
+|..++.++... +...+++..+.++|.++....+ .+...+..+.+.....-
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~------------- 217 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHR------------- 217 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhh-------------
Confidence 666666655442 4444566666666666665531 12222222222211110
Q ss_pred HcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 388 LKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 388 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
+..--..++..+-..|...++|++++.+++.+++.. +.|......++.+|.
T Consensus 218 --~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 --EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred --ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 111122233444445556666677777777666542 223444444554443
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.3e-05 Score=63.94 Aligned_cols=190 Identities=16% Similarity=0.164 Sum_probs=142.8
Q ss_pred ccCCHHHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH
Q 009255 267 RDEKANRALKLWDEMKER---Q-IMPSTF-TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV 341 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (539)
...+.++..+++.++... + ..++.. .|..++-+....|+.+.|...++++...- +-+...-..-...+...|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356788899999887643 2 334443 45556667778899999999999988763 33444433334445678999
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHH
Q 009255 342 EKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEM 421 (539)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 421 (539)
++|.++|+.+++.+ +.|..++..-+-+....|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 446666766666667788888999988888887 5569999999999999999999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 009255 422 EEKKLGPDRYTYAAIHTALVESG---RLEEAQKFTSIMVETG 460 (539)
Q Consensus 422 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 460 (539)
+-.. |.+...+..++..+.-.| +.+-|.++|.++++..
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8542 334566667887766544 5677899999999987
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=9.2e-06 Score=72.80 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=120.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCC
Q 009255 332 IHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD-SVTYNTLISSLCKERR 410 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 410 (539)
...+...|+++.|+..++.++... +.|+..+......+.+.++..+|.+.++++... .|+ ...+..+..++.+.|+
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 334567788999999999988763 446667777788899999999999999999887 344 5667788899999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHH
Q 009255 411 LEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKIN 490 (539)
Q Consensus 411 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (539)
+.+|+.+++..... .+.|...|..|.++|...|+..++...+. .
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------------------------E 433 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA-----------------------------------E 433 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------------------------H
Confidence 99999999988865 36677888899999999998888876553 3
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 491 EHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
.|.-.|+++.|+..+.++.++ .+++..+|..+
T Consensus 434 ~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~aR~ 465 (484)
T COG4783 434 GYALAGRLEQAIIFLMRASQQ-VKLGFPDWARA 465 (484)
T ss_pred HHHhCCCHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 455689999999999999875 46777776554
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.72 E-value=1.1e-05 Score=79.97 Aligned_cols=151 Identities=10% Similarity=0.003 Sum_probs=82.2
Q ss_pred hhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 116 VTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDAN 195 (539)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (539)
..+..+..+|-+.|+.+++..+|+++.+.. +-|+.+.|.++..|... ++++|..++.+.... +
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------F 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------H
Confidence 355556666666666666666666666654 23566666666666666 666666666555442 3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhc-CCccCHhhHHHHHHHHHccCCHHHH
Q 009255 196 CKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKR-GYYLDEVSYGTLITGYFRDEKANRA 274 (539)
Q Consensus 196 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 274 (539)
...+++.++.+++.++....+ .+. +.-.++.+.+... +..--..++..+-..|...++++++
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~-~d~----------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~ 242 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNS-DDF----------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV 242 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCc-ccc----------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence 344455555555555554321 122 2222222222222 1111233444455666677777778
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHH
Q 009255 275 LKLWDEMKERQIMPSTFTYNAMIWGLS 301 (539)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (539)
..+++.+++.... |..+..-++..|.
T Consensus 243 i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 243 IYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 8887777776544 5555666666554
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=2.2e-05 Score=64.51 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=92.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR---- 372 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 372 (539)
...|...|++++|++..+... +......=+..+.+..+++-|...+++|.+.. +..+.+.|+.++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345667777777776665411 22233333344556666777777777776642 45556656665554
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH-HHH
Q 009255 373 EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEE-AQK 451 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~ 451 (539)
.+.+.+|.-+|+++.++ .+|++.+.+..+.++...|++++|..+++.++... ..++.++..++-+-...|...+ ..+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 34577777777777765 45677777777777777777777777777777653 4455666655554444554433 344
Q ss_pred HHHHHHHcC
Q 009255 452 FTSIMVETG 460 (539)
Q Consensus 452 ~~~~~~~~~ 460 (539)
.+.++....
T Consensus 264 ~l~QLk~~~ 272 (299)
T KOG3081|consen 264 NLSQLKLSH 272 (299)
T ss_pred HHHHHHhcC
Confidence 555555443
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=2e-08 Score=55.14 Aligned_cols=34 Identities=47% Similarity=0.864 Sum_probs=29.2
Q ss_pred CCCCcChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009255 4 FGCLPDNVTYNTILDALFKKGKLNEVRDLLSDMK 37 (539)
Q Consensus 4 ~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (539)
.|++||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999888873
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=2.3e-05 Score=63.97 Aligned_cols=189 Identities=17% Similarity=0.150 Sum_probs=143.3
Q ss_pred ccCCHHHHHHHHHHHhhc---C-CccCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCH
Q 009255 232 CEKKLDEAYMLLNSASKR---G-YYLDEV-SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKT 306 (539)
Q Consensus 232 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (539)
...+.++..+++..+... | ..++.. .+..++-+....++.+.|...++++..+- +.+...-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 456788888888887653 3 333332 45556666778899999999999988764 22444444344456678999
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 307 EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
++|+++++.+.+..+ .|..++..-+...-..|..-.|++-+....+. +..|.+.|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999998763 36667766666677778888888888888876 5679999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHhC
Q 009255 387 ILKGKAVDSVTYNTLISSLCKER---RLEDAFGLLSEMEEK 424 (539)
Q Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~ 424 (539)
+-.. |.++..+..+...+...| +...+.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8763 336667777777766554 567799999999865
No 133
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=4.7e-07 Score=75.65 Aligned_cols=103 Identities=17% Similarity=0.258 Sum_probs=84.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS 482 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (539)
-..+.++|.+|+..|.++++. .|+ ...|..-+.+|.+.|.++.|++-.+.++..+ |..
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-------------------p~y 148 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-------------------PHY 148 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------------------hHH
Confidence 356778999999999999865 454 4555677888999999999999999999887 766
Q ss_pred h-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009255 483 I-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIK 529 (539)
Q Consensus 483 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 529 (539)
. +|..|+.+|...|++++|++.|+++++ +.|++.+|..-|...-.
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHHHHH
Confidence 6 999999999999999999999999997 78999988887775433
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=2e-05 Score=77.44 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=78.2
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+...+..|.....+.|.+++|..+++.+.+.. +-+......++.++.+.+++++|...+++.....+. +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 45555566666666666666666666666542 223445555566666666666666666666655322 4445555566
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++.+.|++++|..+|+++...+ +-+..++..++.++...|+.++|...|+++++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 6666666666666666666521 2234556666666666666666666666666554
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.62 E-value=2.3e-06 Score=67.07 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--hhHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVD---SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR--YTYAAI 436 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l 436 (539)
.|..++..+ ..++...+...++.+...... + ......+...+...|++++|...|+........|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 367777777778877776322 2 223445567777888888888888888876422221 234456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
+.++...|++++|...++..... +.....+...+++|.+.|++++|++.|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~-------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE-------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc-------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888653221 233446777888888888888888888765
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=2.7e-06 Score=66.09 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 009255 347 FHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 426 (539)
.++.++... +.+......+...+...|++++|...|+.+...++ .+...|..++..+...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 445555543 22445566677777888888888888888877643 366777888888888888888888888877653
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.+...+..++.++...|++++|.++++.+++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4456677777888888888888888888888876
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.61 E-value=2e-06 Score=77.72 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=101.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTAL 440 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (539)
.....++..+...++++.|+.+++++.+. ++.....++..+...++..+|++++++.++.. +.+...+..-+..|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER----DPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34455667777788899999999998876 33455667888888888899999999988652 44566666667778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 441 VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.+.++++.|.++.+++++.. |+.. +|..|+.+|...|++++|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~ls-------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-------------------PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999999999999986 6555 999999999999999999999998763
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.00073 Score=65.58 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 009255 364 NILLSGLCREGILE---KALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTAL 440 (539)
Q Consensus 364 ~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (539)
+.++.+|.+.++.. +|+-+++...... +-|..+-..+++.|+-.|-+..|.++|+.+--+++..|...+. +.+.+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 44556666666544 3333333333331 1233344566677777777777777777765554444432221 22344
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 009255 441 VESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~ 460 (539)
...|++..+...+....+..
T Consensus 518 ~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HhcccchhHHHHHHHHHHHH
Confidence 45566666666666555544
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.61 E-value=0.00073 Score=65.56 Aligned_cols=455 Identities=16% Similarity=0.125 Sum_probs=248.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 009255 21 FKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVS--GYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEE 98 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 98 (539)
...+++..|......+.+.. |+.. +..++. .+.+.|+.++|..+++.....+.. |..+...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 46789999999999999874 4443 233333 346999999999999988776554 77888999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HhH
Q 009255 99 AFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEG-K---------IDK 168 (539)
Q Consensus 99 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~ 168 (539)
|..+|++..+. .|+..-...+..+|++.+++.+-.+.--++-+. .+-++..|=++++.....- . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999875 577777777888888888776644443333332 2334444444444443321 1 234
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHH-HHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 009255 169 ACKIVRNMEENGFSP-DCVTYNTLIDANCKAGNMEEAFRMMD-VMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSA 246 (539)
Q Consensus 169 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (539)
|.+.++.+.+.+.+. +..-...........|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 556666666543111 11112222334456788999999984 3333323334445556677777888888888888888
Q ss_pred hhcCCccCHhhHHHHHHHH----------------HccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 009255 247 SKRGYYLDEVSYGTLITGY----------------FRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAI 310 (539)
Q Consensus 247 ~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 310 (539)
...+.. | |...+..+ ...+..+...+...+...........++-.+..-+-.-|+.+++.
T Consensus 253 l~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 253 LEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred HHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHH
Confidence 887643 2 22222211 112233334443333333211111111222222233557787776
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCC--CCHHh---HHHHHHHHHhcCC-----HHHHH
Q 009255 311 DMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFK--PDIVT---CNILLSGLCREGI-----LEKAL 380 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~---~~~l~~~~~~~g~-----~~~A~ 380 (539)
..|-+-. |-.| .+..=+..|...=..++-..++......... .+... +...+..-...|. -+.-.
T Consensus 329 ~~y~~kf--g~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKF--GDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHh--CCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 6554322 2222 2222222232222333333444433322100 00000 1111111111221 11222
Q ss_pred HHHHHHH---HcC------CCCChh---------hHHHHHHHHHccCChH---HHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 009255 381 KFFRSWI---LKG------KAVDSV---------TYNTLISSLCKERRLE---DAFGLLSEMEEKKLGPDRYTYAAIHTA 439 (539)
Q Consensus 381 ~~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~ 439 (539)
.++++.. +.| .-|+.. +.+.|+..+.+.++.. +|+-+++.-.... +.|..+-..+++.
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiri 482 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHH
Confidence 2222221 111 122211 3456778888888765 4666666655442 3445566678899
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|.-.|-+..|.+.|..+--.+.. -|...| .+...+...|++..|...++..++
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ-----------------~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQ-----------------TDTLGH-LIFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhh-----------------hccchH-HHHHHHHhcccchhHHHHHHHHHH
Confidence 99999999999999877544421 222222 223344556777777777776664
No 140
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=1.1e-07 Score=52.20 Aligned_cols=32 Identities=41% Similarity=0.814 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 009255 145 GIKPNAVTHNIMIKWYCKEGKIDKACKIVRNM 176 (539)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 176 (539)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=6.6e-05 Score=67.50 Aligned_cols=127 Identities=14% Similarity=0.103 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALV 441 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 441 (539)
.......+...|.+++|+..++.++.. .+-|+..+......+...|+..+|.+.+++++.. .|+ ......++.++.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333444566789999999999998887 3336666677888999999999999999999965 566 455668899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.|++.+|++++....... +.++..|..|+.+|..+|+..+|...+-+...
T Consensus 386 ~~g~~~eai~~L~~~~~~~------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 386 KGGKPQEAIRILNRYLFND------------------PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hcCChHHHHHHHHHHhhcC------------------CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999887 44556999999999999999999999998876
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.48 E-value=4.2e-06 Score=76.23 Aligned_cols=105 Identities=16% Similarity=0.154 Sum_probs=65.9
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS 481 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (539)
+..+...|++++|+.+|+++++.. +.+...+..++.++...|++++|+..++++++.+ +.+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------------------P~~ 69 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD------------------PSL 69 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------cCC
Confidence 344555667777777777766542 3344556666666677777777777777777665 223
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 482 SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 482 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
...|..++.+|...|++++|+..|+++++ +.|+...+...+..|
T Consensus 70 ~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 70 AKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 33666667777777777777777777765 456666555555544
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.47 E-value=1.1e-05 Score=63.11 Aligned_cols=127 Identities=10% Similarity=0.149 Sum_probs=84.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHH
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP--DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVD--SVTYNTLI 402 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 402 (539)
.|..++..+ ..++...+...++.+.+..... .......+...+...|++++|...|+.+......|. ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 4677788887788877753221 123344456677788888888888888887643222 22445677
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 403 SSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
..+...|++++|+..++..... ..........+.++.+.|++++|++.|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7888888888888888664322 233455667788888888888888888765
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.46 E-value=4e-05 Score=58.61 Aligned_cols=107 Identities=7% Similarity=-0.108 Sum_probs=71.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPE 476 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (539)
..-.+...+...|++++|..+|+-+.... +-+...|..|+.++...|++++|+..|..+...+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~---------------- 99 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK---------------- 99 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----------------
Confidence 34445555667788888888888777542 2334556677777777888888888888888776
Q ss_pred CCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCCHHHHHH
Q 009255 477 EIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKG-IAINKSTYMN 522 (539)
Q Consensus 477 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~ 522 (539)
+-++..+.+++.++...|+.+.|++.|+.++... -.|.......
T Consensus 100 --~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~ 144 (157)
T PRK15363 100 --IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQ 144 (157)
T ss_pred --CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 2333477777888888888888888888777622 3344444433
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.36 E-value=1.6e-05 Score=60.12 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=74.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
++..++..+...|++++|...+.++.+.. |+ ......++.++...|++++|.+.++.++...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------- 71 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------- 71 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----------
Confidence 45566677778888888888888887542 22 345666788888888888888888888876521
Q ss_pred CCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009255 473 KTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKST 519 (539)
Q Consensus 473 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 519 (539)
.|. ..++..++.++.+.|++++|.+.++++++. .|+...
T Consensus 72 ------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 111 (119)
T TIGR02795 72 ------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR--YPGSSA 111 (119)
T ss_pred ------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH--CcCChh
Confidence 121 336778888888888888888888888874 465543
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=4e-05 Score=58.62 Aligned_cols=100 Identities=11% Similarity=-0.050 Sum_probs=81.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
+......+...+...|++++|.++|+.+...++. +..-|..|..++-..|++.+|+..|..+...+ +.|+..+..++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 3445555666677889999999999988876433 66678888888999999999999999998765 345677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 009255 439 ALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++...|+.+.|++.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988875
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=3e-06 Score=55.73 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 435 AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
.++..+...|++++|++.++.+++.. |+.. .|..++.++...|++++|+..|+++++ .
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALE--L 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--H
Confidence 35678899999999999999999987 6555 999999999999999999999999997 4
Q ss_pred CCCHH
Q 009255 514 AINKS 518 (539)
Q Consensus 514 ~p~~~ 518 (539)
.|+++
T Consensus 61 ~P~~p 65 (65)
T PF13432_consen 61 DPDNP 65 (65)
T ss_dssp STT-H
T ss_pred CcCCC
Confidence 67753
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=1.3e-05 Score=57.99 Aligned_cols=94 Identities=18% Similarity=0.191 Sum_probs=65.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEE 477 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (539)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++......
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 4455666677777777777777776542 2333556667777777788888888887777765
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 478 IDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.+...+..++..+...|++++|...++++.+
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 65 -PDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred -CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 23334777777777788888888888777765
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=1.3e-06 Score=60.96 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=43.2
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHH
Q 009255 408 ERRLEDAFGLLSEMEEKKL-GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYS 486 (539)
Q Consensus 408 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (539)
.|+++.|+.+++++.+... .++...+..++.++.+.|++++|.+++++ .+.+ +.+.....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~------------------~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD------------------PSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH------------------HCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC------------------CCCHHHHH
Confidence 3566666666666665421 11333444456666666666666666666 3332 12223444
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 009255 487 EKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 487 ~l~~~~~~~g~~~~A~~~~~~ 507 (539)
.++.++.+.|++++|+++|++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 456666666666666666654
No 150
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.28 E-value=5.9e-05 Score=55.68 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=78.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCC
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTP 475 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (539)
.-.+..++...|+.++|+.+|++....|+... ...+..++.++...|++++|..++++.....
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--------------- 68 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--------------- 68 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 34566778888999999999999998876554 3566778888999999999999999998875
Q ss_pred CCCCCC---hh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 476 EEIDPS---SI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 476 ~~~~~~---~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
|+ .. ....++-++...|++++|++.+-..+. ++...|..-+.
T Consensus 69 ----p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~ 114 (120)
T PF12688_consen 69 ----PDDELNAALRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIR 114 (120)
T ss_pred ----CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 43 22 444566678889999999999887764 33334444444
No 151
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.28 E-value=0.00046 Score=53.66 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=106.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTY 433 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~ 433 (539)
.|+...-..|..+....|+..+|...|++...--..-|+.....+..+....+++..|...++++-+.+ |. +.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 567777777888899999999999999988775556678888888999999999999999999988763 32 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
..+++++...|++++|+..|+.++... |+...-...+..+.++|+..+|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y-------------------pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY-------------------PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 678889999999999999999999887 7777666667788899988888766665544
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=9.3e-05 Score=70.57 Aligned_cols=143 Identities=10% Similarity=0.030 Sum_probs=81.0
Q ss_pred CCCHHhHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc--------CChHHHHHHHHHHHh
Q 009255 357 KPDIVTCNILLSGLCR--E---GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE--------RRLEDAFGLLSEMEE 423 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~ 423 (539)
+.+...|..++++... . ++.+.|..+|+++++..+. ....|..+..++... .+...+.+..++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3455555555554322 1 2255666666666665221 223333333333221 112233333443332
Q ss_pred CC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHH
Q 009255 424 KK-LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDAL 502 (539)
Q Consensus 424 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 502 (539)
.. ...+..++..++-.....|++++|...++++++.+ |+...|..++.++...|++++|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-------------------ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-------------------MSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------CCHHHHHHHHHHHHHcCCHHHHH
Confidence 21 23344556666555566788888888888888876 66667888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHH
Q 009255 503 QIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 503 ~~~~~~~~~~~~p~~~~~~ 521 (539)
+.|+++.. +.|..++|.
T Consensus 474 ~~~~~A~~--L~P~~pt~~ 490 (517)
T PRK10153 474 DAYSTAFN--LRPGENTLY 490 (517)
T ss_pred HHHHHHHh--cCCCCchHH
Confidence 88888776 566665554
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.23 E-value=0.00034 Score=54.37 Aligned_cols=127 Identities=17% Similarity=0.082 Sum_probs=99.6
Q ss_pred CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCC
Q 009255 392 AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNT 471 (539)
Q Consensus 392 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 471 (539)
.|+...-..|..+..+.|++.+|...|++...--+..|...+..+.++....+++..|...++.+.+.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa--------- 156 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA--------- 156 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc---------
Confidence 56777778899999999999999999999986444667788889999999999999999999999998733
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhc
Q 009255 472 SKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSISKA 537 (539)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A 537 (539)
..++.....++++|...|++..|...|+.++. ..|+...-..+.--+.+.+ +..+|
T Consensus 157 -------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qg-r~~ea 212 (251)
T COG4700 157 -------FRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQG-RLREA 212 (251)
T ss_pred -------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhc-chhHH
Confidence 22334566778999999999999999999997 6777665544444344443 34443
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.23 E-value=5.3e-06 Score=55.16 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=56.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 441 VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 441 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
...|++++|++.++++++.. |-+...+..++.+|.+.|++++|.+++++++. ..|+...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHH
Confidence 56899999999999999997 33555899999999999999999999999997 47998888
Q ss_pred HHHHHH
Q 009255 521 MNLMNG 526 (539)
Q Consensus 521 ~~~l~~ 526 (539)
..++..
T Consensus 62 ~~l~a~ 67 (68)
T PF14559_consen 62 QQLLAQ 67 (68)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.23 E-value=0.003 Score=55.43 Aligned_cols=222 Identities=13% Similarity=0.117 Sum_probs=120.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHh--HHHHHHHH---hcCCC
Q 009255 267 RDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSG-MIPDETT--FNTIIHGF---CSEGQ 340 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~ 340 (539)
+.|..+.|..+-+..-..-+. -...+...+...+..|+++.|+++++.-.... +.++..- -..++.+- .-..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 455555555555555443222 34556666666666666666666666544322 1222111 11111111 11234
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 009255 341 VEKALQFHNKMVEKSFKPDIV-TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 341 ~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 419 (539)
...|...-.+..+. .|+.. .-..-..++.+.|+..++-++++.+-+. .|.+.++..++ +.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cHHHHHH
Confidence 55555555555443 33322 2223345677778888888888777765 34444443322 234443 3444444
Q ss_pred HHHhC-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhc-C
Q 009255 420 EMEEK-KLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQ-G 496 (539)
Q Consensus 420 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 496 (539)
++... .++|| ......+..+....|++..|..--+.+.... |....|..+++.-... |
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~-------------------pres~~lLlAdIeeAetG 377 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA-------------------PRESAYLLLADIEEAETG 377 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC-------------------chhhHHHHHHHHHhhccC
Confidence 43321 23444 4555666777777788888777777776664 7777777777775544 8
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 009255 497 RYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 497 ~~~~A~~~~~~~~~~~~~p~ 516 (539)
+-.++.+.+-+.++..-.|+
T Consensus 378 Dqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 378 DQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred chHHHHHHHHHHhcCCCCCc
Confidence 88888888877776443343
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.23 E-value=5.5e-05 Score=68.69 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 009255 45 RTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINR 124 (539)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (539)
-.....|+..+...++++.|.++|+++.+.. |+ ....++..+...++-.+|.+++.+..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344566777777888999999999988763 33 44557777777888888888888887653 4456666666777
Q ss_pred HhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 009255 125 FFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEE 178 (539)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 178 (539)
+.+.++++.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+-.++.+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888889999999999888762 22556888899999999999999988887653
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.9e-05 Score=63.15 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=93.6
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 009255 383 FRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES---GRLEEAQKFTSIMVET 459 (539)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 459 (539)
++.-...+ +-|...|..|..+|...|+++.|..-|.++.+.. +++...+..++.++..+ ....++.+++++++..
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 34434443 3488899999999999999999999999998763 55677777888776643 3467899999999999
Q ss_pred CCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 460 GKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+ +-++.+...|+..+...|++.+|...|+.|++. -|.+..+..++.
T Consensus 223 D------------------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D------------------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C------------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 8 344458888999999999999999999999974 455555555544
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.23 E-value=7e-05 Score=60.71 Aligned_cols=101 Identities=13% Similarity=0.161 Sum_probs=65.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
.+..++..+...|++++|+..|+++.+....+. ...+..++.++...|++++|++.++++++..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------- 102 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------------- 102 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 455666666667777777777777664422221 2456666777777777777777777777765
Q ss_pred CCCCCCChhhHHHHHHHHhhcCC--------------HHHHHHHHHHHHHcCCCCCH
Q 009255 475 PEEIDPSSISYSEKINEHCSQGR--------------YKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 475 ~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~p~~ 517 (539)
+.+...+..++.+|...|+ +++|.+.++++.. ..|+.
T Consensus 103 ----p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~--~~p~~ 153 (172)
T PRK02603 103 ----PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR--LAPNN 153 (172)
T ss_pred ----cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh--hCchh
Confidence 2233366666777766665 5777788888775 45665
No 159
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00036 Score=61.39 Aligned_cols=158 Identities=15% Similarity=0.111 Sum_probs=109.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------------hHH
Q 009255 333 HGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSV-------------TYN 399 (539)
Q Consensus 333 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~ 399 (539)
.++.-.|+.+.|...--.+++... .+......-..++.-.++.+.|...|++.+..+ |+.. .+.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 345567888888887777776532 233332222334445677888888888877653 2322 122
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEK---KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPE 476 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (539)
.-..-..+.|++.+|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+.+++.+
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---------------- 317 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---------------- 317 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC----------------
Confidence 2233456789999999999998843 223344556677777888999999999999998876
Q ss_pred CCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 009255 477 EIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKG 512 (539)
Q Consensus 477 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 512 (539)
|... .+..-+.++...++|++|.+-|+++.+..
T Consensus 318 ---~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 ---SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5554 77788888888999999999999998743
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=2.6e-05 Score=65.49 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=59.0
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
..+.+++.+|+..|.++++.. +.|..-|..-..+|.+.|.++.|++-.+..+..+.. ...+|..|..+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 445666777777777776653 235555556666677777777777666666654211 233666666677777777777
Q ss_pred HHHHHHHHhCCCCCCHhhHH
Q 009255 415 FGLLSEMEEKKLGPDRYTYA 434 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~ 434 (539)
++.|++.++ +.|+..+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777766663 456655443
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.18 E-value=1.1e-05 Score=53.86 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=57.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcC-CHHHHHHHHH
Q 009255 429 DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQG-RYKDALQIFE 506 (539)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g-~~~~A~~~~~ 506 (539)
+..++..++..+...|++++|+..|+++++.+ |+.. .|..++.+|...| ++++|++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------------------CCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 45678889999999999999999999999997 5554 9999999999999 7999999999
Q ss_pred HHHH
Q 009255 507 ETRQ 510 (539)
Q Consensus 507 ~~~~ 510 (539)
++++
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
No 162
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=8.2e-05 Score=65.25 Aligned_cols=162 Identities=12% Similarity=0.066 Sum_probs=110.7
Q ss_pred CCHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHH-
Q 009255 358 PDIVTCNIL-LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAA- 435 (539)
Q Consensus 358 ~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~- 435 (539)
|....+..+ ..++.-.|+.++|.+.--.+.+.+.. +......-..++.-.++.+.|+..|++.+.. .|+......
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 333444433 44566789999999988887776322 3333333334455678899999999999854 566432221
Q ss_pred ------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 009255 436 ------------IHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQ 503 (539)
Q Consensus 436 ------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 503 (539)
-+.-..+.|++..|.+.|..++..++. ...|+...|.+.+.+..+.|+..+|+.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--------------n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--------------NKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--------------ccchhHHHHHHhHhhhcccCCchhhhh
Confidence 223456789999999999999998733 123455578899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhcc
Q 009255 504 IFEETRQKGIAINKSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 504 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
--+++++ +.|.-.-.....+.|.-.-++|++||
T Consensus 309 dc~~Al~--iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 309 DCNEALK--IDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred hhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986 44444333444446666666688886
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.15 E-value=0.0001 Score=55.68 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHhhHHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKGKA--VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLG--PDRYTYAAI 436 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l 436 (539)
.++..++..+.+.|++++|.+.|+.+...... .....+..++.++...|+++.|...++++...... ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556666777778888888888877765321 11335566777788888888888888887754211 113456677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.++...|++++|.+.++++++..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777778888888888888888776
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=5.7e-06 Score=57.69 Aligned_cols=81 Identities=22% Similarity=0.306 Sum_probs=55.1
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 009255 373 EGILEKALKFFRSWILKGKA-VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 450 (539)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++ .. ..|+ ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 47788888888888876432 2444556678888888888888888877 32 2332 344455678888888888888
Q ss_pred HHHHHH
Q 009255 451 KFTSIM 456 (539)
Q Consensus 451 ~~~~~~ 456 (539)
++++++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887753
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=6.7e-05 Score=54.04 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE 442 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (539)
+..++..+...|++++|...++++..... .+...+..++..+...+++++|.+.+++..... +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 44556666677777778777777766522 234566667777777778888888887777543 3334566677777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 009255 443 SGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 443 ~g~~~~A~~~~~~~~~~~ 460 (539)
.|++++|...+..+.+..
T Consensus 81 ~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 LGKYEEALEAYEKALELD 98 (100)
T ss_pred HHhHHHHHHHHHHHHccC
Confidence 788888888777776654
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=0.00013 Score=66.72 Aligned_cols=91 Identities=11% Similarity=-0.003 Sum_probs=52.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 009255 368 SGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLE 447 (539)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (539)
..+...|++++|+..|++++..... +...|..++.+|...|++++|+..++++++.. +.+...+..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3344556666666666666655322 44555566666666666666666666666442 223445555666666666666
Q ss_pred HHHHHHHHHHHcC
Q 009255 448 EAQKFTSIMVETG 460 (539)
Q Consensus 448 ~A~~~~~~~~~~~ 460 (539)
+|+..++++++.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666655
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.06 E-value=8.5e-06 Score=45.18 Aligned_cols=33 Identities=39% Similarity=0.620 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009255 11 VTYNTILDALFKKGKLNEVRDLLSDMKKQGLVP 43 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 43 (539)
.+|+.++.+|.+.|+++.|..+|+.|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567778888888888888888888887777665
No 168
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=1e-05 Score=45.26 Aligned_cols=33 Identities=39% Similarity=0.814 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPN 44 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 44 (539)
+||.+|.+|.+.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777765
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00034 Score=56.76 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVD--SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTAL 440 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 440 (539)
+..+...+...|++++|...|++.......+. ...+..++..+...|++++|+..++++.+.. +.+...+..++.++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33344444444444444444444443321111 1234444444444455555555544444321 11223333334444
Q ss_pred HhcCC--------------HHHHHHHHHHHHHcC
Q 009255 441 VESGR--------------LEEAQKFTSIMVETG 460 (539)
Q Consensus 441 ~~~g~--------------~~~A~~~~~~~~~~~ 460 (539)
...|+ +++|.++++++...+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 43333 566777777777765
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.04 E-value=0.013 Score=55.69 Aligned_cols=236 Identities=14% Similarity=0.060 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 009255 42 VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN-KSLP--------DVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLL 112 (539)
Q Consensus 42 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 112 (539)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.++|-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 467778888877776766777777777655432 2110 001111112222 477777777777765532
Q ss_pred CChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhH
Q 009255 113 PDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPN----AVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTY 188 (539)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 188 (539)
..+..+.+.|++-...++++.- |...| ...|+.+...+.....+++|.+.+..-.. .
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~--- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T--- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---
Confidence 2345556666666666655431 11111 23566666666666666666666554321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHcc
Q 009255 189 NTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRD 268 (539)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 268 (539)
...+.++.+..++++-..+.+. .+.+...+-.+..++.+.|.-++|.+.+-+.... .+.+..+...
T Consensus 826 e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p---------kaAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP---------KAAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCc---------HHHHHHHHHH
Confidence 1244455555555544433333 2335556666777777777777776655332211 1234455555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhH--------------HHHHHHHHcCCCHHHHHHHHHHHHH
Q 009255 269 EKANRALKLWDEMKERQIMPSTFTY--------------NAMIWGLSQSGKTEQAIDMLNELLQ 318 (539)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (539)
++|.+|.++-+...- |...+. ..-|..+.+.|++-.|.+++.+|.+
T Consensus 892 nQW~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 892 NQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 666666665543321 111111 1123445566666666666666654
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.03 E-value=0.00016 Score=62.19 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=78.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
.|..........|++++|+..|+.+++. .|+ ..++..++.++...|++++|...|+.+++..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------- 212 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---------- 212 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----------
Confidence 3444444445678999999999998875 343 256778889999999999999999999987732
Q ss_pred CCCCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 473 KTPEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 473 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
.|.. .++..++.++...|++++|.++|+++++ ..|+....
T Consensus 213 ------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~a 253 (263)
T PRK10803 213 ------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDGA 253 (263)
T ss_pred ------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 2223 3778888889999999999999999987 46776543
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.02 E-value=0.0024 Score=54.65 Aligned_cols=183 Identities=12% Similarity=0.041 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 009255 44 NRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTY---NMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNT 120 (539)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 120 (539)
++..+......+...|++++|.+.|+.+....+.. .... -.++.++.+.+++++|...+++..+....-....+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 34444445555667788888888888887764332 2222 3455667778888888888888776531111122222
Q ss_pred HHHHHh--cc---------------CC---HhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 009255 121 LINRFF--ES---------------GR---SMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENG 180 (539)
Q Consensus 121 l~~~~~--~~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 180 (539)
.+.+.+ .. .+ ...|++.|+++++. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 222221 11 11 22444555555543 1222 1123333322222211
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 009255 181 FSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK--GLKMNTITLNTILHTLCCEKKLDEAYMLLNSA 246 (539)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (539)
.-. .-..+...|.+.|.+..|+.-++.+.+. +.+.....+..+..+|...|..++|......+
T Consensus 174 --la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 --LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred --HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 000 0113445566666666666666666653 23334445556666666666666666655444
No 173
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.02 E-value=0.00016 Score=63.64 Aligned_cols=131 Identities=13% Similarity=0.046 Sum_probs=75.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR-EGILEKALKFFRSWILKGKAVDSVTYNTLISSL 405 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (539)
+|..++....+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45556666666666777777777776432 2344555555544333 45555577777766665 344566666666666
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPDR---YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
...|+.+.|..+|++.+.. +.++. ..|..++.--.+.|+.+...++.+++.+..
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6677777777777776644 22222 355556665566666666666666666654
No 174
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.01 E-value=4.5e-05 Score=51.53 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
...+.+.+++++|.++++.++..+ |.+...|...+.++...|++++|.+.++++++ ..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------------------PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCC
Confidence 457889999999999999999997 34445999999999999999999999999997 5688
Q ss_pred HHHHHHHHH
Q 009255 517 KSTYMNLMN 525 (539)
Q Consensus 517 ~~~~~~~l~ 525 (539)
..+...+..
T Consensus 62 ~~~~~~~~a 70 (73)
T PF13371_consen 62 DPDARALRA 70 (73)
T ss_pred cHHHHHHHH
Confidence 777665543
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.99 E-value=7.4e-05 Score=55.19 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
...+++++-..|+.++|+.+|++++..+.. .+... .+..++..|...|++++|..++++....
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~----------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLS----------------GADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 446778888999999999999999998733 23223 8889999999999999999999999873
Q ss_pred CCCCC---HHHHHHHHHHHHhcCCchhhcc
Q 009255 512 GIAIN---KSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 512 ~~~p~---~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
.|+ ......++.-.+...|+.++|+
T Consensus 68 --~p~~~~~~~l~~f~Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 68 --FPDDELNAALRVFLALALYNLGRPKEAL 95 (120)
T ss_pred --CCCccccHHHHHHHHHHHHHCCCHHHHH
Confidence 466 6666666666666667788886
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.97 E-value=0.012 Score=52.87 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=108.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHH-HHHH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILKG-KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYA-AIHT 438 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~ 438 (539)
.+|...+.+..+...++.|.++|-++.+.+ ..+++.++++++..++ .|++..|..+|+--... -||...|. ..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 355666777777788999999999999887 5677778888887654 57889999999876654 45655443 4555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS--SISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
-+..-++-+.|+.+|+..++.- ..+ ...|..++..-..-|+...|..+=+++.+ +.|.
T Consensus 475 fLi~inde~naraLFetsv~r~------------------~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERL------------------EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH------------------HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCc
Confidence 6677899999999999887654 122 33888888888889999999999888887 5777
Q ss_pred HHHHHHHHHHH
Q 009255 517 KSTYMNLMNGL 527 (539)
Q Consensus 517 ~~~~~~~l~~~ 527 (539)
..+...+++-+
T Consensus 535 en~~evF~Sry 545 (660)
T COG5107 535 ENLIEVFTSRY 545 (660)
T ss_pred HhHHHHHHHHH
Confidence 76666555544
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00023 Score=62.55 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 009255 291 FTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHG-FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSG 369 (539)
Q Consensus 291 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 369 (539)
.+|..++....+.+..+.|..+|.++.+.+ ..+..+|...... +...++.+.|..+|+..++. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888999999999999999999998543 2345556555555 33467888899999999986 56688899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 370 LCREGILEKALKFFRSWILKGKAVDS---VTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
+...++.+.|..+|++.+.. ..++. ..|..++..-.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 33333 48999999999999999999999999875
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.95 E-value=0.0036 Score=53.62 Aligned_cols=178 Identities=11% Similarity=0.101 Sum_probs=102.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 009255 260 TLITGYFRDEKANRALKLWDEMKERQIMPSTFTY---NAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFC 336 (539)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (539)
.....+...|++++|.+.|+++....+.+ .... -.++.++.+.++++.|...+++..+..+.....-+...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34444556777777777777777654332 2222 3455667777788888888877776543322222222222222
Q ss_pred c--C---------------CC---HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 009255 337 S--E---------------GQ---VEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSV 396 (539)
Q Consensus 337 ~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 396 (539)
. . .| ..+|...|+.+++. -|+. .-..+|...+..+... -..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHH
Confidence 1 1 11 12344555555544 1222 2233444433333221 111
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEK--KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMV 457 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 457 (539)
.-..++.-|.+.|.+..|+.-++.+++. +.+.....+..+..++...|..++|.++...+.
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1224567788899999999999999875 223335667788899999999999988876654
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.95 E-value=4.6e-05 Score=66.70 Aligned_cols=138 Identities=11% Similarity=-0.020 Sum_probs=92.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCChhhHHHHHHHHHccCChHHHHHHHHHHHhC----C-CCCCH
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWIL----KGK-AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK----K-LGPDR 430 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~ 430 (539)
..|..|...|.-.|+++.|+..-+.-+. .|- ......+..+..++.-.|+++.|.+.|+..... | -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3556666666677889999877654332 121 112346778889999999999999999876533 2 12233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
....+|+.+|.-..+++.|+.++.+=+..-....+. --..-++.+|+.+|...|..+.|+...+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr------------iGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR------------IGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455678888888888999999887754332110000 01223788999999999999999988777654
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.94 E-value=0.00087 Score=64.11 Aligned_cols=138 Identities=9% Similarity=0.007 Sum_probs=93.2
Q ss_pred CCCCCHHhHHHHHHHHhc--C---CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 009255 320 GMIPDETTFNTIIHGFCS--E---GQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCRE--------GILEKALKFFRSW 386 (539)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 386 (539)
..+.+...|...+++... . ++...|..+|+++++..+ .....+..+..++... .+...+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 344566677766665432 2 236678888888887632 2344454444433321 1233444444444
Q ss_pred HHc-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 387 ILK-GKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 387 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
... ..+.++..|..+...+...|++++|...++++.+. .|+...|..++.++...|+.++|.+.++++...+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 12335567887877777889999999999999976 4788889999999999999999999999999987
No 181
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.93 E-value=2.2e-05 Score=43.85 Aligned_cols=31 Identities=52% Similarity=0.797 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 009255 83 YNMLINGWCNAGMLEEAFRLRKEMESLKLLP 113 (539)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 113 (539)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444443
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.92 E-value=0.00025 Score=64.78 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCChhhHHHHHHHHhccCCHhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHH
Q 009255 112 LPDVVTYNTLINRFFESGRSMEAFKLIDELDEH--GIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYN 189 (539)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 189 (539)
+.+......+++.+....+.+.+..++.+.... ....-+.|..++++.|.+.|..+++..+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555566666666666666666666543 122223444567777777777777777777766777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhcc
Q 009255 190 TLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCE 233 (539)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 233 (539)
.|+..+.+.|++..|.++...|..++...++.|....+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777776666665555555555555444433
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.91 E-value=0.00036 Score=63.76 Aligned_cols=121 Identities=17% Similarity=0.169 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHH
Q 009255 78 PDVWTYNMLINGWCNAGMLEEAFRLRKEMESL--KLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNI 155 (539)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (539)
.+......+++.+....+++.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35555666666666666677777777666554 1222234556777777777777778777777777777778888888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 009255 156 MIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKA 198 (539)
Q Consensus 156 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (539)
|+..+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888887777777776655555555655555555544
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.91 E-value=0.00033 Score=56.61 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGP--DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
...|..++..+...|++++|+..|+++......| ...++..++.++...|++++|++.++++++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~------------ 102 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN------------ 102 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------
Confidence 3456677777778888888888888887543222 13467788888889999999999999988875
Q ss_pred CCCCCCCCChhhHHHHHHHHh-------hcCCHHHHHHHHHH
Q 009255 473 KTPEEIDPSSISYSEKINEHC-------SQGRYKDALQIFEE 507 (539)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 507 (539)
+.....+..++.++. ..|++++|+..+++
T Consensus 103 ------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 103 ------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred ------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 223336677777777 77787755444443
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.00056 Score=60.49 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHh----CCC-CCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC---CCC--hhhHHHHHHHHHcc
Q 009255 340 QVEKALQFHNKMVE----KSF-KPDIVTCNILLSGLCRE-GILEKALKFFRSWILKGK---AVD--SVTYNTLISSLCKE 408 (539)
Q Consensus 340 ~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~ 408 (539)
+++.|...+++... .|- ..-...+..+...|... |+++.|.+.|++..+.-. .+. ..++..++..+...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555555443 121 11133555667777777 899999999988775411 111 23567788889999
Q ss_pred CChHHHHHHHHHHHhCCCCC-----CH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh
Q 009255 409 RRLEDAFGLLSEMEEKKLGP-----DR-YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS 482 (539)
Q Consensus 409 ~~~~~A~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (539)
|++++|+++|++........ +. ..+...+-++...||...|.+.+++.....+.. ..+.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F---------------~~s~ 233 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF---------------ASSR 233 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS---------------TTSH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------CCcH
Confidence 99999999999988653222 12 233444556777899999999999998776210 1122
Q ss_pred h--hHHHHHHHHhh--cCCHHHHHHHHHHHH
Q 009255 483 I--SYSEKINEHCS--QGRYKDALQIFEETR 509 (539)
Q Consensus 483 ~--~~~~l~~~~~~--~g~~~~A~~~~~~~~ 509 (539)
. ....|+.++-. ...++.|+.-|+++.
T Consensus 234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2 55667777654 355777777787775
No 186
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=3.3e-05 Score=42.74 Aligned_cols=29 Identities=31% Similarity=0.470 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 009255 83 YNMLINGWCNAGMLEEAFRLRKEMESLKL 111 (539)
Q Consensus 83 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 111 (539)
|+.++.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444443333
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=9.9e-05 Score=48.38 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=42.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 401 LISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 401 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..+...|++++|+..|+++++.. +-+...+..++.++...|++++|..+++++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556777788888888888887653 3345677777777888888888888888887765
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.84 E-value=0.0019 Score=49.94 Aligned_cols=105 Identities=8% Similarity=-0.069 Sum_probs=70.2
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS 481 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (539)
..-+...|++++|..+|+-+...+ .-+...+..|+.++-..+++++|+..|..+.... .-|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~------------------~~d 104 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL------------------KND 104 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------------------cCC
Confidence 334456788888888888777554 3344556677777777888888888888777665 223
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 482 SISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 482 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
+......+.+|...|+.+.|+..|+.+++ .|.......-...++
T Consensus 105 p~p~f~agqC~l~l~~~~~A~~~f~~a~~---~~~~~~l~~~A~~~L 148 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAKARQCFELVNE---RTEDESLRAKALVYL 148 (165)
T ss_pred CCccchHHHHHHHhCCHHHHHHHHHHHHh---CcchHHHHHHHHHHH
Confidence 33455667788888888888888888876 455555544444333
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.0038 Score=55.24 Aligned_cols=92 Identities=13% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHC----CCC-CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC-----CHH-hHHH
Q 009255 298 WGLSQS-GKTEQAIDMLNELLQS----GMI-PDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP-----DIV-TCNI 365 (539)
Q Consensus 298 ~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~~~ 365 (539)
..|... |+++.|++.|++..+. +.. .-..++..+...+.+.|++++|.++|+++....... +.. .+..
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 344444 5666666666554432 100 012234455556666666666666666665432111 111 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 366 LLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
.+-++...|++-.|.+.+++....
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233444556666666666666544
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.0017 Score=55.25 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=72.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCCHhhH
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER---RLEDAFGLLSEMEEKKLGPDRYTY 433 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~ 433 (539)
+.|..-|..|..+|...|+++.|..-|.+..... ++++..+..+..++.... .-.++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4477788888888888888888888888777762 346666666666655432 3456777888887653 3455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..++..+...|++.+|...|+.+++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 677777888888888888888888776
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.82 E-value=8.1e-05 Score=49.54 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=48.9
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG-RLEEAQKFTSIMVETG 460 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 460 (539)
++..|..++..+...|++++|+..|+++++.+ +.+...+..++.++...| ++++|++.++++++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45567777778888888888888888887653 334567777777888887 6888888888887765
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.82 E-value=0.00052 Score=55.44 Aligned_cols=100 Identities=12% Similarity=-0.081 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHH
Q 009255 26 LNEVRDLLSDMKKQ-GLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLP--DVWTYNMLINGWCNAGMLEEAFRL 102 (539)
Q Consensus 26 ~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 102 (539)
+..+...+..+.+. +.......+..++..+...|++++|...|+........+ ...++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444322 212223355666666667777777777777776543222 123566666667777777777777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHh
Q 009255 103 RKEMESLKLLPDVVTYNTLINRFF 126 (539)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~~ 126 (539)
+++..... +....++..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 77766542 222334444444444
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.73 E-value=0.00088 Score=59.02 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh----CCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CChhh
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVE----KSF-KPDIVTCNILLSGLCREGILEKALKFFRSWILK----GKA-VDSVT 397 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~ 397 (539)
|..+...|.-.|+++.|+...+.-+. -|- ......+..+..++.-.|+++.|.+.++..... |-+ ....+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34444444455555555554443221 111 012234445555555566666666555543321 111 11223
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 398 YNTLISSLCKERRLEDAFGLLSEMEEK-----KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 398 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
-..|...|.-..++++|+.++.+-+.- ...-....+.+|+.++...|..++|..+.+..++
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334555555555566666555543211 1112334555666666666666666655555443
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.70 E-value=0.0007 Score=48.02 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=32.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC--------CHhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009255 89 GWCNAGMLEEAFRLRKEMESLKL-LPDVVTYNTLINRFFESG--------RSMEAFKLIDELDEHGIKPNAVTHNIMIKW 159 (539)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (539)
-+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ..-+.+.+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555554 445555555544443321 112233444444444444444444444443
Q ss_pred H
Q 009255 160 Y 160 (539)
Q Consensus 160 ~ 160 (539)
+
T Consensus 114 L 114 (120)
T PF08579_consen 114 L 114 (120)
T ss_pred H
Confidence 3
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=7e-05 Score=40.33 Aligned_cols=29 Identities=28% Similarity=0.709 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQG 40 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 40 (539)
+|+.++++|.+.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.011 Score=49.26 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 009255 14 NTILDALFKKGKLNEVRDLLSDMKKQGL--VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWC 91 (539)
Q Consensus 14 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (539)
-.....+...|++.+|...|+.+..... +-...+...++.++.+.|+++.|...++...+..+......+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 3455666788899999999999887631 22333566777888889999999999988877644322222222222222
Q ss_pred hcCC-------------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009255 92 NAGM-------------LEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIK 158 (539)
Q Consensus 92 ~~g~-------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (539)
.... ..+|... +..++.-|=.+.-..+|.+.+..+... =...-..+..
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~ 149 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 1111 1122222 223333333334444444444443321 1111123456
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHhcCCHHH
Q 009255 159 WYCKEGKIDKACKIVRNMEENGFSPDCV----TYNTLIDANCKAGNMEE 203 (539)
Q Consensus 159 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ 203 (539)
.|.+.|.+..|..-++.+.+. -|++. ....++.+|.+.|..+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 666777777777777766665 23322 33445556666665553
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.66 E-value=0.06 Score=51.44 Aligned_cols=372 Identities=15% Similarity=0.087 Sum_probs=185.4
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQ-GLVP--------NRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSL 77 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 77 (539)
.|-+..|..+...-...-.++.|+..|-+.... |+.. +...-. ...-..-|++++|.+++-.+.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 578889999998888888888888888776543 2211 111111 122234588999998887776542
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009255 78 PDVWTYNMLINGWCNAGMLEEAFRLRKEMESLK-LLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIM 156 (539)
Q Consensus 78 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (539)
..|..+.+.|++-...++++.--... -..-...|+.+...+.....+++|.++|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 24566677788777666655421100 0111346777788888778888888777653221 123
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCH
Q 009255 157 IKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKL 236 (539)
Q Consensus 157 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (539)
+.++.+..++++-+.+.+.+ +.+....-.+..++...|.-++|.+.+-+- +. | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHH
Confidence 45555555555544444443 234445555666666777777666655332 11 1 1233445555555
Q ss_pred HHHHHHHHHHhhcCCcc----------CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHhhHHHHHHHHHcC
Q 009255 237 DEAYMLLNSASKRGYYL----------DEVSYGTLITGYFRDEKANRALKLWDEMKERQ---IMPSTFTYNAMIWGLSQS 303 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 303 (539)
.+|.++-+...-..+.. ...-....|..+.+.|.+-+|-+++.+|.++. ..|-...-...+-+..-.
T Consensus 895 ~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLv 974 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLV 974 (1189)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55554443221110000 00001123445566667666777776665431 112111111111111112
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 009255 304 GKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFF 383 (539)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (539)
.++.++++-.+....+|...+... + ...+-...+-++.+..-+ -.....|..+..--...|.++.|.+.-
T Consensus 975 E~h~~~ik~~~~~~~~g~~~dat~---l----les~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 975 ENHRQTIKELRKIDKHGFLEDATD---L----LESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHHhhhhhhcCcchhhhh---h----hhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 234444444444444444322221 1 111222222222222111 012334444444455567777777654
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 009255 384 RSWILK-GKAVDSVTYNTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 384 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
-.+.+. .+-|....|..+.-+.+..+.+...-+.|-++.
T Consensus 1045 l~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1045 LILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred hhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 433322 345566677777666665555555444444443
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.65 E-value=0.0057 Score=57.40 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=54.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHh-------
Q 009255 359 DIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRY------- 431 (539)
Q Consensus 359 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------- 431 (539)
+.++...+...+.+...+.-|.++|..+-+. ..++......++|++|..+-++..+. .||..
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 4555566666666677778888888776432 34566777888888888887776532 34321
Q ss_pred ----hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 432 ----TYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 432 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
-|...-+++-++|+..+|.++++++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122233455556666666666665543
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=0.00017 Score=47.84 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=32.5
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 407 KERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..|++++|+.+|+++.... +.+..+...++.++.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566666666666666542 3345555566666666666666666666666665
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.65 E-value=0.0014 Score=56.49 Aligned_cols=99 Identities=9% Similarity=0.038 Sum_probs=69.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHhhHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVD--SVTYNTLISSLCKERRLEDAFGLLSEMEEKK--LGPDRYTYAAIH 437 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~ 437 (539)
.|......+.+.|++++|...|+.++...+... +..+..++.+|...|++++|...|+.+.+.- -+.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556888888888888887632211 2467778888888888888888888887541 111245566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++...|++++|.++++.+++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77878888888888888888877
No 201
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00081 Score=59.49 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.++..++.++.+.+++.+|++...+.++.+ +++.-+...-+.+|...|+++.|+..|+++++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD------------------PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456778889999999999999999999998 45555999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCC
Q 009255 511 KGIAINKSTYMNLMNGLIKRRK 532 (539)
Q Consensus 511 ~~~~p~~~~~~~~l~~~~~~~~ 532 (539)
+.|++.....-+..|...-+
T Consensus 320 --~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 320 --LEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred --hCCCcHHHHHHHHHHHHHHH
Confidence 78999988887777765444
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.61 E-value=0.0014 Score=46.54 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=43.2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCChhhHHHH
Q 009255 51 LVSGYCKLGWLKEAMRVVDLMTQNKS-LPDVWTYNMLINGWCNAG--------MLEEAFRLRKEMESLKLLPDVVTYNTL 121 (539)
Q Consensus 51 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 121 (539)
.+..+...+++...-.+|+.+.+.|. .|+..+|+.++...++.. +.-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33344444555555555555555555 455555555555444321 233456667777777777777777777
Q ss_pred HHHHhc
Q 009255 122 INRFFE 127 (539)
Q Consensus 122 ~~~~~~ 127 (539)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 766554
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.60 E-value=0.032 Score=50.31 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=29.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.+..++.+..-.|++++|.+.+++|.+ +.|...-....+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~--l~~~~W~l~St~~ 346 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFK--LKPPAWELESTLE 346 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCcchhHHHHHH
Confidence 445778888889999999999999997 3565544444433
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.03 Score=46.66 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=96.7
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH-----HHH
Q 009255 327 TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTY-----NTL 401 (539)
Q Consensus 327 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----~~l 401 (539)
....++....-.|.+.-....+.+.++...+.++.....++++-.+.|+.+.|...|++..+.....+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666777888888899999988776778888889999999999999999999977654333333333 334
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
...|.-++++..|...+.+....+ +.|+...+.-+-++.-.|+..+|++.++.+++..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455667788888888888887653 3344444444444555788999999999998876
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.59 E-value=0.014 Score=48.80 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=82.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhc-
Q 009255 261 LITGYFRDEKANRALKLWDEMKERQIMP--STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCS- 337 (539)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 337 (539)
....+...|++.+|...|+.+...-+.. .....-.++.++.+.|+++.|...+++..+..+......+...+.+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444555666666666666665542211 1223444555666666666666666666654322111111111111111
Q ss_pred ------------CCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 338 ------------EGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSL 405 (539)
Q Consensus 338 ------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (539)
.+...+|...|+.+++ -|=...-..+|...+..+... =...-..++..|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 1112233333333333 333333444444444443322 111122356778
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHH
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPD---RYTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~ 451 (539)
.+.|.+..|..-++.+++. .+-+ ...+..++.++.+.|..+.+..
T Consensus 152 ~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 8888888888888888875 2222 3455667788888888775443
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.049 Score=48.24 Aligned_cols=281 Identities=12% Similarity=0.056 Sum_probs=161.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH----HHHHHhccCCH
Q 009255 163 EGKIDKACKIVRNMEENGFSPDCVTYNTLIDA--NCKAGNMEEAFRMMDVMGRKGLKMNTITLNT----ILHTLCCEKKL 236 (539)
Q Consensus 163 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~ 236 (539)
.|+-..|.++-.+..+. +..|....-.++.+ -.-.|+++.|.+-|+.|.. |+.+-.. +.-..-+.|+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 45555555555443321 12233333333332 3345777777777777754 2222222 22222356667
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHh--hHHHHHHHH---HcCCCHHHHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQI-MPSTF--TYNAMIWGL---SQSGKTEQAI 310 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~--~~~~l~~~~---~~~~~~~~a~ 310 (539)
+.|.++-+........ -+......+...+..|+++.|+++.+.-+...+ .++.. .-..|+.+- .-..+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7776666665544322 344556677777777777777777766544321 12221 111122111 1123456666
Q ss_pred HHHHHHHHCCCCCCHH-hHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 311 DMLNELLQSGMIPDET-TFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 311 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
..-.+..+. .|+.. .-.....++.+.|+..++-.+++.+-+... .+.++.. ..+.+.|+ .+..-+++....
T Consensus 250 ~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~l--Y~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALL--YVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHH--HHHhcCCC--cHHHHHHHHHHH
Confidence 665555543 34432 223345678899999999999999988754 4443332 22344554 333333332221
Q ss_pred -CCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcC
Q 009255 390 -GKA-VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE-SGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 390 -~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 460 (539)
..+ .+..+...+..+....|++..|..--+.... ..|....|..+.+.-.. .||-.++.+++.+.++..
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 122 3566777888888899999999887777764 47888888888876654 499999999999998764
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.57 E-value=0.056 Score=48.92 Aligned_cols=450 Identities=14% Similarity=0.106 Sum_probs=232.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHH------HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHH--H
Q 009255 19 ALFKKGKLNEVRDLLSDMKKQGLVPNRTTY------NILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLING--W 90 (539)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 90 (539)
.+.+.+++.+|.++|.+..+.. ..++..+ +.++.+|. .++.+.....+....+..+ ...|..+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~---~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG---KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 3557889999999999987763 2232322 34556664 4566666666666665422 2234444433 3
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCC------------hhhHHHHHHHHhccCCHhHHHHHHHHHHhCC----CCCCHHH
Q 009255 91 CNAGMLEEAFRLRKEMESL--KLLPD------------VVTYNTLINRFFESGRSMEAFKLIDELDEHG----IKPNAVT 152 (539)
Q Consensus 91 ~~~g~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 152 (539)
.+.+.+.+|++.+...... +..|. -.-=+..+.++...|++.++..+++++...= ...+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788899998888776554 21111 1112445677778888888888888775542 2357777
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 009255 153 HNIMIKWYCKEGKIDKACKIVRNMEEN---GFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHT 229 (539)
Q Consensus 153 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (539)
|+.++-.+.+. .|-++.+. .+-|+ |.-++..|.+.=.. ++.-.=..+.|.......++..
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHH
Confidence 77766555432 22222221 11121 22333333322110 1100000122333333333332
Q ss_pred Hhcc--CCHHHHHHHHHHHhhcCCccCHh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHc
Q 009255 230 LCCE--KKLDEAYMLLNSASKRGYYLDEV-SYGTLITGYFRDEKANRALKLWDEMKERQIM----PSTFTYNAMIWGLSQ 302 (539)
Q Consensus 230 ~~~~--~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 302 (539)
..-. ....--.+++......-+.|+.. +...+...+.. +.+++..+.+.+...... .-..+|..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 11122223333333333333322 22333333333 444444444433322110 024567777788888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHH-------HHHHHHh-cCCCHH---HHHHHHHHHHhCCCCCCHH-hHHHH---H
Q 009255 303 SGKTEQAIDMLNELLQSGMIPDETTFN-------TIIHGFC-SEGQVE---KALQFHNKMVEKSFKPDIV-TCNIL---L 367 (539)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~~-~~~~l---~ 367 (539)
.++...|...+.-+....+ +...-. .+-...+ ...++. .=..+|+.+...++ |.. ....+ +
T Consensus 311 ~~~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~A 386 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGA 386 (549)
T ss_pred HHhHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHH
Confidence 8888888888876665432 221111 1111112 111222 22344444444322 222 22222 3
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHcCCCCChhhHHHHH----HHHHc---cCChHHHHHHHHHHHhCCCCCC----HhhHHH
Q 009255 368 SGLCREGI-LEKALKFFRSWILKGKAVDSVTYNTLI----SSLCK---ERRLEDAFGLLSEMEEKKLGPD----RYTYAA 435 (539)
Q Consensus 368 ~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 435 (539)
.-+.+.|. -++|..+++.+.... +-|...-|... .+|.. ...+.+-+.+-.-..+.|++|- ...-+.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 34555665 788999998887652 22433333222 22222 1223333333333345577664 233344
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 436 IHTA--LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 436 l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
+..| +...|++.++.-.-..+.+.. |++.+|..+|-++....++++|...+..+
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~ia-------------------PS~~~~RLlGl~l~e~k~Y~eA~~~l~~L----- 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIA-------------------PSPQAYRLLGLCLMENKRYQEAWEYLQKL----- 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhC-------------------CcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----
Confidence 4443 567899999988888787775 88889999999999999999999999885
Q ss_pred CCCHHHHH
Q 009255 514 AINKSTYM 521 (539)
Q Consensus 514 ~p~~~~~~ 521 (539)
.|+...+.
T Consensus 522 P~n~~~~d 529 (549)
T PF07079_consen 522 PPNERMRD 529 (549)
T ss_pred CCchhhHH
Confidence 45555544
No 208
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.54 E-value=0.00031 Score=48.11 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=53.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
..++..++.++...|++++|+++++++++.... .+ ...|... ++..++.+|...|++++|++.++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~-----------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQ-LG-----------DDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TT-----------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-HC-----------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356788999999999999999999999865211 00 0023322 8899999999999999999999998
Q ss_pred HH
Q 009255 509 RQ 510 (539)
Q Consensus 509 ~~ 510 (539)
++
T Consensus 73 l~ 74 (78)
T PF13424_consen 73 LD 74 (78)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.005 Score=46.50 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=67.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCC
Q 009255 401 LISSLCKERRLEDAFGLLSEMEEKKL--GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEI 478 (539)
Q Consensus 401 l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (539)
-+....+.|++++|++.|+.+...-. +-...+...++.++.+.|++++|...+++.++.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---------------- 79 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---------------- 79 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------
Confidence 34445677888888888888776511 112355667788888888888888888888888744
Q ss_pred CCChh-hHHHHHHHHhhcCC---------------HHHHHHHHHHHHHcCCCCCHH
Q 009255 479 DPSSI-SYSEKINEHCSQGR---------------YKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 479 ~~~~~-~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~p~~~ 518 (539)
.|++. ++...+-++..+.. ...|...|+++++ ..|++.
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~--~yP~S~ 133 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR--RYPNSE 133 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH--HCcCCh
Confidence 45544 55554544555444 7788888888886 467654
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.50 E-value=0.01 Score=46.05 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRL 446 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 446 (539)
..-+...|++++|..+|+-+...++- ++.-|..|+.++-..+++++|+..|..+...+ ..|+..+...+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 33455688888998888877766443 56667788888888888888888888776554 23444456677888888888
Q ss_pred HHHHHHHHHHHHc
Q 009255 447 EEAQKFTSIMVET 459 (539)
Q Consensus 447 ~~A~~~~~~~~~~ 459 (539)
+.|+..|+.+++.
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9998888888874
No 211
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.47 E-value=0.00021 Score=38.44 Aligned_cols=28 Identities=36% Similarity=0.634 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 009255 152 THNIMIKWYCKEGKIDKACKIVRNMEEN 179 (539)
Q Consensus 152 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 179 (539)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0056 Score=51.56 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=73.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKL--GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
.|+.-+. +...|++..|...|...++... .-....+..|+.++...|++++|..+|..+.+..+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~------------ 210 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK------------ 210 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC------------
Confidence 3554444 4466778888888888886521 111345566888888888888888888888887644
Q ss_pred CCCCCCCh-hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 475 PEEIDPSS-ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 475 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
.|.. ..+.-|+.+..+.|+.++|..+|++++++ .|+.....
T Consensus 211 ----s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~aA~ 252 (262)
T COG1729 211 ----SPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR--YPGTDAAK 252 (262)
T ss_pred ----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 3444 37788888888888888888888888873 56655443
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.057 Score=45.08 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=96.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-----CCCCHHhHHHH
Q 009255 292 TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS-----FKPDIVTCNIL 366 (539)
Q Consensus 292 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 366 (539)
..+.++..+.-.+.+.-....+++..+...+.++.....+++.-.+.||.+.|..+|++..+.. +..+..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666667777888888888888887666677788888888888888888888888776532 22233333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHH
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYA 434 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 434 (539)
...|.-++++..|...+.++...+.. ++...|.-+-+..-.|+..+|++.++.|.+. .|...+-.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 44556677888888888888776433 5555565555566678888888888888864 45444333
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.38 E-value=0.021 Score=44.77 Aligned_cols=72 Identities=25% Similarity=0.354 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH--
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR-- 509 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 509 (539)
+...++..+...|++++|.++++.++..+ |-+...|..++.+|...|+..+|++.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD------------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 45567778889999999999999999998 3455599999999999999999999999864
Q ss_pred ---HcCCCCCHHHHH
Q 009255 510 ---QKGIAINKSTYM 521 (539)
Q Consensus 510 ---~~~~~p~~~~~~ 521 (539)
+.|+.|+..+-.
T Consensus 126 l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 126 LREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHS----HHHHH
T ss_pred HHHHhCcCcCHHHHH
Confidence 358888877654
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.37 E-value=0.13 Score=48.49 Aligned_cols=184 Identities=13% Similarity=0.016 Sum_probs=113.5
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 009255 255 EVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHG 334 (539)
Q Consensus 255 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (539)
...|..-+......|+.+.+.-+|+...-..-. -...|-..+.-....|+.+-|..++....+-..+..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 346666777777889999998888887642111 2345555666666669999888888776654333222222222223
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCChhhHHHHHHH-----H
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDI-VTCNILLSGLCREGILEKAL---KFFRSWILKGKAVDSVTYNTLISS-----L 405 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~~-----~ 405 (539)
+-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.+. .++...... .. +......+..- +
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~-~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KE-NNGILEKLYVKFARLRY 451 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-cc-CcchhHHHHHHHHHHHH
Confidence 456689999999999998763 443 33333455566788888887 333333222 11 22333322222 2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESG 444 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 444 (539)
.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3367889999999999875 4666677777777665544
No 216
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0061 Score=49.38 Aligned_cols=115 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHH-----ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 009255 43 PNRTTYNILVSGYC-----KLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVT 117 (539)
Q Consensus 43 ~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 117 (539)
.+-.+|..++..|. +.|.++-....+..|.+-|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------- 112 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------- 112 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence 35556666666665 345566666666666666766677777777666543 2221 011111110
Q ss_pred HHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHH
Q 009255 118 YNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKI-DKACKIVRNM 176 (539)
Q Consensus 118 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 176 (539)
. -.-.+-+-|++++++|...|+-||..++..++..+.+.+.. .+..++.=.|
T Consensus 113 -----~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 -----M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred -----c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 0 01123456888899999999999999999888888776652 3344433333
No 217
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.36 E-value=0.012 Score=42.98 Aligned_cols=55 Identities=22% Similarity=0.137 Sum_probs=28.1
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 405 LCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 405 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
....|+.+.|++.|.+.+.. .+.....|+.-..++.-+|+.++|..-++++++..
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 34455555555555555532 12334455555555555555555555555555543
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.35 E-value=0.0059 Score=49.44 Aligned_cols=87 Identities=20% Similarity=0.334 Sum_probs=48.7
Q ss_pred ChhhHHHHHHHHhc-----cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------cCCHhHHHHH
Q 009255 114 DVVTYNTLINRFFE-----SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCK----------------EGKIDKACKI 172 (539)
Q Consensus 114 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~ 172 (539)
+..+|..++..+.+ .|..+-....+..|.+-|+.-|..+|+.|+.++=+ -.+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44444444444432 24445555555555555555555555555554432 1233456677
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 009255 173 VRNMEENGFSPDCVTYNTLIDANCKAGN 200 (539)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 200 (539)
+++|...|+-||..++..++..+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777666554
No 219
>PRK11906 transcriptional regulator; Provisional
Probab=97.34 E-value=0.015 Score=53.16 Aligned_cols=147 Identities=11% Similarity=0.071 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 009255 340 QVEKALQFHNKMVEK-SFKPD-IVTCNILLSGLCRE---------GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE 408 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 408 (539)
+.+.|..+|.+.... ...|+ ...|..+..++... .+..+|.++.++.++.+.. |+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 456777888888722 22333 44555555554331 2345677777777777544 777777777777778
Q ss_pred CChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh---h
Q 009255 409 RRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI---S 484 (539)
Q Consensus 409 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 484 (539)
++++.|...|+++... .|| ..++...+..+.-.|+.++|.+.++++++.. |... .
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-------------------P~~~~~~~ 410 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-------------------PRRRKAVV 410 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------------chhhHHHH
Confidence 8888888888888854 555 4566667777777888899988888888876 4332 4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 485 YSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 485 ~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
....++.|+..+ .++|+++|-+-.
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 455555666554 567777766544
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.29 E-value=0.0022 Score=43.15 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..|.+.+++++|+.+++.++..+ +.+...+...+.++...|++++|.+.++.+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34555666666666666666442 2234445555556666666666666666666554
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.25 E-value=0.0018 Score=58.77 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 394 DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRY----TYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 394 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
+...|+.+..+|...|++++|+..|++.++. .|+.. ++..++.+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556777777777777777777777777753 56632 3677777777777777777777777775
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.15 E-value=0.0011 Score=45.40 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhC--CCC---CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEK--KLG---PD-RYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.+++.+..+|...|++++|+..|+++.+. ... |+ ..++..++.++...|++++|+++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35667777777777777777777776643 111 11 345667777788888888888888777653
No 223
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0087 Score=53.24 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
..+++.+..++.+.+++..|++.-.+.+..+ ++|...+..-+.++...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-------------- 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-------------- 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------------
Confidence 3467788889999999999999999999875 6778888888999999999999999999999987
Q ss_pred CCCCCCChh-hHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 009255 475 PEEIDPSSI-SYSEKINEHCSQGRY-KDALQIFEETRQ 510 (539)
Q Consensus 475 ~~~~~~~~~-~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 510 (539)
|+.. +-..++.+-.+..++ +...++|.+|..
T Consensus 322 -----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 322 -----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5554 566666665555444 444788888875
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.11 E-value=0.0064 Score=44.36 Aligned_cols=83 Identities=16% Similarity=0.152 Sum_probs=63.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
+-++...|+.+.|++.|.+++..- |....+|++-+.++.-+|+.++|+.-++++++..-...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~------------------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t 111 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLA------------------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT 111 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhc------------------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc
Confidence 346778999999999999999987 45566999999999999999999999999998432223
Q ss_pred HHHHHHHH--HHHHhcCCchhhc
Q 009255 517 KSTYMNLM--NGLIKRRKSISKA 537 (539)
Q Consensus 517 ~~~~~~~l--~~~~~~~~~~~~A 537 (539)
.+....+. +.+++..|+.+.|
T Consensus 112 rtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 112 RTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred hHHHHHHHHHHHHHHHhCchHHH
Confidence 34444433 3566666766665
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.09 E-value=0.0013 Score=38.78 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=34.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
.+|..++..|.+.|++++|+++|+++++ ..|++......++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 3688899999999999999999999998 5788876665554
No 226
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.07 E-value=0.28 Score=46.42 Aligned_cols=186 Identities=11% Similarity=-0.008 Sum_probs=114.7
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+..+|...+..-...|+.+.+.-.++...-. +..=...|-..+......|+.+-|..++....+...+-.+.+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3456777777778888998888888887642 122234555566666667888888888877666544433433333344
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCcccccCCCCCCCCCCC
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDR-YTYAAIHTALVESGRLEEAQ---KFTSIMVETGKINHQVVQPNTSKTPEEID 479 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (539)
..-..|+++.|..+++...+. . |+. ..-..-+....+.|+.+.+. +++........ .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~-----------------~ 435 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE-----------------N 435 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc-----------------C
Confidence 445678999999999998875 3 553 33334455667788888887 33333332211 1
Q ss_pred CChh--hHHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009255 480 PSSI--SYSEKINE-HCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKR 530 (539)
Q Consensus 480 ~~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 530 (539)
+... .+...++. +.-.++.+.|..++.++.+. +.++..-|..++.-+...
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 2222 23333333 33458899999999999873 344455666666644443
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.07 E-value=0.21 Score=45.18 Aligned_cols=170 Identities=15% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChh
Q 009255 43 PNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSL---PDVWTYNMLINGWCN---AGMLEEAFRLRKEMESLKLLPDVV 116 (539)
Q Consensus 43 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 116 (539)
.++.+...++-+|....+++...++.+.+...... .....--...-++.+ .|+.++|++++..+......+++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34555556666688888888888888888765211 122222233344555 778888888888855555567777
Q ss_pred hHHHHHHHHhc---------cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-Hh---HHHHHH---HH-HHHc
Q 009255 117 TYNTLINRFFE---------SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGK-ID---KACKIV---RN-MEEN 179 (539)
Q Consensus 117 ~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~a~~~~---~~-~~~~ 179 (539)
+|..+...|-. ....++|+..|.+.-+. .|+..+-..++..+.-.|. .+ +..++- .. +.+.
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~k 296 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRK 296 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhh
Confidence 77777766532 22367788888776554 2443332223333333332 11 222222 11 1123
Q ss_pred CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 180 GF---SPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 180 ~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
|. ..+-..+.+++.++.-.|++++|.+.+++|.+.
T Consensus 297 g~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 297 GSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 31 245556678888889999999999999999876
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.25 Score=44.25 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=50.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 009255 363 CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE 442 (539)
Q Consensus 363 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 442 (539)
.+..+.-+...|+...|.++-.++. .|+...|..-+.+++..++|++-..+... .-++..|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3444455556677666666655442 35666777777777777777666554321 1123556667777777
Q ss_pred cCCHHHHHHHHHH
Q 009255 443 SGRLEEAQKFTSI 455 (539)
Q Consensus 443 ~g~~~~A~~~~~~ 455 (539)
.|+..+|..++.+
T Consensus 250 ~~~~~eA~~yI~k 262 (319)
T PF04840_consen 250 YGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHh
Confidence 7777777776655
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.94 E-value=0.02 Score=48.31 Aligned_cols=98 Identities=20% Similarity=0.187 Sum_probs=74.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCC-HhhHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKA--VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK-LGPD-RYTYAAIH 437 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~ 437 (539)
.|+.-+. +.+.|++..|...|...++..+. -.+..+-.|+.++...|++++|...|..+.+.- -.|. +..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555554 44667899999999998887432 123466778889999999999999999888752 1222 46778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+..+.|+.++|...|+++++..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999988
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.092 Score=44.97 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=24.4
Q ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 336 CSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 336 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
...|++..|...|+....... -+......++.+|...|+.+.|..++..+
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 444555555555555554421 13344444555555555555555555443
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.91 E-value=0.029 Score=49.01 Aligned_cols=169 Identities=13% Similarity=0.081 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhH
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVEK-SFKP---DIVTCNILLSGLCREGILEKALKFFRSWILKGK-----AVDSVTY 398 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~ 398 (539)
|..+.+++.+..++.+++.+-..-... |..| .......+..++...+.++++.+.|+....... -....++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444444444455554444433322 1111 112333455555556666777776666554311 1112356
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC--CCCC-C------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccC
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEK--KLGP-D------RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQP 469 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 469 (539)
..|...|....|+++|..+..++.+. .+.. | ..+...+.-++...|+.-+|.+..+++.+......
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G----- 240 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG----- 240 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC-----
Confidence 66666777777777776666655432 1111 1 12233344556667777777766666554332100
Q ss_pred CCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 470 NTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 470 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..+... ....+++.|...|+.+.|..-|+.+.
T Consensus 241 --------dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 241 --------DRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred --------ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 011111 44566777777777777777776654
No 232
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.48 Score=46.13 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=77.8
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 009255 290 TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSG 369 (539)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 369 (539)
..+.+--+.-+...|+..+|.++-.+.+ .|+...|..-+.+++..++|++-+++-+... .+.-|..++.+
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~ 753 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA 753 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence 3445555666777788888877766543 4677788888888888888887555443332 23446667888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHH
Q 009255 370 LCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSE 420 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 420 (539)
|.+.|+.++|.+++-+.... + ..+.+|.+.|++.+|.++--+
T Consensus 754 c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 88999999999988775332 1 566778888888888876544
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.87 E-value=0.12 Score=49.42 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=102.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHH------hHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCChh
Q 009255 328 FNTIIHGFCSEGQVEKALQFHNKMVEKS-FKPDIV------TCNILLSGLC----REGILEKALKFFRSWILKGKAVDSV 396 (539)
Q Consensus 328 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~ 396 (539)
+..++....-.||-+.+++.+....+.+ +. .+. .|..++..+. ...+.+.|.++++.+... -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4445555555666666666666655432 11 111 1222222221 245678888888888876 45666
Q ss_pred hHH-HHHHHHHccCChHHHHHHHHHHHhCC-C--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCC
Q 009255 397 TYN-TLISSLCKERRLEDAFGLLSEMEEKK-L--GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 397 ~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 472 (539)
.|. .-.+.+...|+.++|++.|+++.... - ......+..+++.+.-..+|++|.+.+..+.+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------------ 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------------ 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc------------
Confidence 554 34566777889999999999766321 0 1123455667788888999999999999999876
Q ss_pred CCCCCCCCChhhHH-HHHHHHhhcCCH-------HHHHHHHHHHHH
Q 009255 473 KTPEEIDPSSISYS-EKINEHCSQGRY-------KDALQIFEETRQ 510 (539)
Q Consensus 473 ~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~ 510 (539)
..+...|. ..+.++...|+. ++|.+++.++..
T Consensus 336 ------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 336 ------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred ------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 34444443 445556677888 888888888765
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.81 E-value=0.014 Score=45.83 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHhhH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEE-----KKLGPDRYTY 433 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~ 433 (539)
+...++..+...|++++|..+.+.+.... +.+...|..++.+|...|+..+|++.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666777788888888888877763 33666778888888888888888888777653 2777776543
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.66 Score=45.87 Aligned_cols=180 Identities=17% Similarity=0.124 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHH
Q 009255 10 NVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNR--TTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLI 87 (539)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 87 (539)
......-+..+.+...++.|+.+...-. .+++. ..+...+.-+.+.|++++|...+-+.... .+| ..++
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi 404 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVI 404 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHH
Confidence 3455677888888999999988765432 22222 23344445556889999998877666542 122 2355
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCH
Q 009255 88 NGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGI-KPNAVTHNIMIKWYCKEGKI 166 (539)
Q Consensus 88 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 166 (539)
.-|....++..-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+... .|. .-| ....+..+.+.+-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYL 479 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChH
Confidence 6666667777777888888888754 55556678889999998888777766654 221 112 23445666666667
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 167 DKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
++|..+-.+... +......+ +-..+++++|++++..+
T Consensus 480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 777665554432 22222222 33456777777777654
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.75 E-value=0.12 Score=47.51 Aligned_cols=163 Identities=15% Similarity=0.102 Sum_probs=111.0
Q ss_pred hhH--HHHHHHHHc-----CCCHHHHHHHHHHHHH-CCCCCC-HHhHHHHHHHHhc---------CCCHHHHHHHHHHHH
Q 009255 291 FTY--NAMIWGLSQ-----SGKTEQAIDMLNELLQ-SGMIPD-ETTFNTIIHGFCS---------EGQVEKALQFHNKMV 352 (539)
Q Consensus 291 ~~~--~~l~~~~~~-----~~~~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 352 (539)
..| ..++.+... ....+.|..+|.+... +...|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 555554433 1245678889999882 223444 3445444443321 234566778888888
Q ss_pred hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--
Q 009255 353 EKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR-- 430 (539)
Q Consensus 353 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-- 430 (539)
+.+ +.|+.....+..+....++++.|...|++....++. ....|......+...|+.++|.+.+++..+. .|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~ 407 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRK 407 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhH
Confidence 876 458888888888888889999999999999987432 5567778888888999999999999998854 5653
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 431 -YTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 431 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
.+...++..|+. ...++|+++|-+-.+
T Consensus 408 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 408 AVVIKECVDMYVP-NPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHHHcC-CchhhhHHHHhhccc
Confidence 233334445654 457888888865443
No 237
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.71 E-value=0.28 Score=45.47 Aligned_cols=181 Identities=17% Similarity=0.164 Sum_probs=98.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHH
Q 009255 267 RDEKANRALKLWDEMKERQIMPST-FTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKAL 345 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 345 (539)
+..+...-++.-++.++.. |+- ..|..| +--......++.+++++..+.+-. .+. +....+..-
T Consensus 180 RERnp~aRIkaA~eALei~--pdCAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~----~lg-------~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEIN--PDCADAYILL--AEEEASTIVEAEELLRQAVKAGEA----SLG-------KSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHHhh--hhhhHHHhhc--ccccccCHHHHHHHHHHHHHHHHH----hhc-------hhhhhhccc
Confidence 3445555555555555542 221 222222 222345578888888887764311 111 000000111
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 346 QFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKA-VDSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
..++........+-..+-..+..++.+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11222223223344555566788888899999999999999875332 23446778899999999999999999987543
Q ss_pred CCCCCH-hhHHHHHHHHHhcCC---------------HHHHHHHHHHHHHcCCC
Q 009255 425 KLGPDR-YTYAAIHTALVESGR---------------LEEAQKFTSIMVETGKI 462 (539)
Q Consensus 425 ~~~~~~-~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~ 462 (539)
..+.+. .+|...+-.....++ -..|.+.+.++++.++.
T Consensus 325 ~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 333332 233322211111222 12356778888887743
No 238
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.14 Score=40.84 Aligned_cols=94 Identities=12% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPDR--YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEE 477 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (539)
.+...+...|++++|...++.........+. .+-..|.+.....|.+++|...+......+
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~----------------- 156 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES----------------- 156 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-----------------
Confidence 3456778899999999999988743211111 122356778889999999999887665543
Q ss_pred CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 009255 478 IDPSSISYSEKINEHCSQGRYKDALQIFEETRQKG 512 (539)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 512 (539)
-.......-++++...|+.++|+..|++.++.+
T Consensus 157 --w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 157 --WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred --HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 233345567899999999999999999999864
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.69 E-value=0.31 Score=41.08 Aligned_cols=53 Identities=17% Similarity=0.160 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 009255 22 KKGKLNEVRDLLSDMKKQGL--VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQN 74 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 74 (539)
+.|++++|.+.|+.+..+.+ +-...+...++-++-+.++++.|+..+++..+.
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 45555555555555554421 112223333444444555555555555555444
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.35 Score=41.58 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=76.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGIL 376 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 376 (539)
.......|+..+|...|......... +......++.+|...|+.+.|..++..+-..--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34556789999999999998876444 45566778889999999999999998875432111111212223334444443
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 377 EKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
.+...+-.++... +-|...-..+...+...|+.++|.+.+-.+...
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333333333321 125555566666777777777777766666544
No 241
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.66 E-value=0.026 Score=51.58 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=57.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDS----VTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
+.+...+..+..+|.+.|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467789999999999999999999999999874 443 35899999999999999999999999975
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.088 Score=45.69 Aligned_cols=165 Identities=16% Similarity=0.138 Sum_probs=92.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHccCChH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTY----NTLISSLCKERRLE 412 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~ 412 (539)
..|...+|-..++++++. .+.|...+.-.-.+|.-.|+.+.-...++++... ..++...| ..+..++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 445566666666666664 3445555665566666677766666666666654 22333322 23445556677777
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEH 492 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 492 (539)
+|.+.-++..+.+ +.|......+..++.-.|++.++.++..+-...=.. +--.-...|-..+-.+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~--------------s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ--------------SWMLASHNYWHTALFH 257 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh--------------hhHHHhhhhHHHHHhh
Confidence 7777777776543 444555556666677777777777765543221100 0000111344455556
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 493 CSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
...+.++.|+++|++-+-..+..++.
T Consensus 258 iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hcccchhHHHHHHHHHHHHHhhccch
Confidence 66677888888877654333444443
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.23 Score=47.23 Aligned_cols=52 Identities=12% Similarity=-0.038 Sum_probs=25.6
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEM 281 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 281 (539)
.++..+...+.+...+..|.++|..+-.. ..++......++|.+|..+-+..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 33444444444445555555555544322 23445555566666666555543
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.57 E-value=0.094 Score=50.08 Aligned_cols=167 Identities=20% Similarity=0.148 Sum_probs=113.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh------hHHHHHHHHHc----cCChHHH
Q 009255 345 LQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSV------TYNTLISSLCK----ERRLEDA 414 (539)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~A 414 (539)
.-+|.-++.. +||. +..++...+-.|+-+.+.+.+.+..+.+---.+. .|...+..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555554 3333 4456666677889999999888876542111121 23333333332 4577889
Q ss_pred HHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh--hhHHHHHHH
Q 009255 415 FGLLSEMEEKKLGPDRYTYA-AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS--ISYSEKINE 491 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~ 491 (539)
.++++.+.+. -|+...|. .-++.+...|+.++|++.++.+...... -|.. ..+.-++..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~----------------~~Ql~~l~~~El~w~ 314 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE----------------WKQLHHLCYFELAWC 314 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh----------------HHhHHHHHHHHHHHH
Confidence 9999999965 57765554 4567788899999999999987753321 1222 367788999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCch
Q 009255 492 HCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSI 534 (539)
Q Consensus 492 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 534 (539)
+.-.++|++|...+.++.+.. +.....|.-+.++|+...++.
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999853 556677777777777666655
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.0078 Score=35.39 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++..++.++...|++++|+++++++++..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 356788999999999999999999999997
No 246
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.51 E-value=0.11 Score=38.93 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=71.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 429 DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 429 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
|..++..++-++++.|+.+....+++..-..+....... .......+..|+.....+++.+|+..|+...|+++.+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~--~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKE--GDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcccc--CccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345667777788888888888777766654432211100 003445566788889999999999999999999999999
Q ss_pred HH-cCCCCCHHHHHHHHHHHH
Q 009255 509 RQ-KGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 509 ~~-~~~~p~~~~~~~~l~~~~ 528 (539)
.+ -++.-+...|..++.-++
T Consensus 79 s~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 79 SRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHcCCCCCHHHHHHHHHHHH
Confidence 86 556777889999988544
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.06 Score=40.81 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=60.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
...+..-+....+.|++++|++.|+.+....+. +|-.. +...++.+|.+.|++++|+..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~----------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF----------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334445566777899999999999999998843 23222 7788999999999999999999999
Q ss_pred HHcCCCCCH--HHHHHHHHHH
Q 009255 509 RQKGIAINK--STYMNLMNGL 527 (539)
Q Consensus 509 ~~~~~~p~~--~~~~~~l~~~ 527 (539)
++ +.|+. ..+..++.++
T Consensus 74 ir--LhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 74 IR--LHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HH--hCCCCCCccHHHHHHHH
Confidence 98 45554 3555555544
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.44 Score=39.61 Aligned_cols=205 Identities=16% Similarity=0.071 Sum_probs=104.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 009255 223 LNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQ 302 (539)
Q Consensus 223 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (539)
|.....+|...++++.|...+.+..+. ...+...|. ..+.++.|.-+.+++... .--...|+.-...|.+
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444555666666666655554431 011111111 112233344444444332 0112334455566777
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC---C--CCCCHHhHHHHHHHHHhcCCHH
Q 009255 303 SGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK---S--FKPDIVTCNILLSGLCREGILE 377 (539)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~ 377 (539)
.|.++.|-..+++.-+. ....+++.|+++|++.... + ..--...+....+.+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 77777776666654331 1223444455555443321 0 0111223444555666777777
Q ss_pred HHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHhcCCHHHH
Q 009255 378 KALKFFRSWILK----GKAVDS-VTYNTLISSLCKERRLEDAFGLLSEMEEKK---LGPDRYTYAAIHTALVESGRLEEA 449 (539)
Q Consensus 378 ~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 449 (539)
+|-..+.+-... ..-++. ..|...+-.+....++..|...++.-.+.+ -+.+..+...|+.+|- .|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHH
Confidence 776665443211 111122 235666667778889999999998855431 1234567777777664 6888888
Q ss_pred HHHHH
Q 009255 450 QKFTS 454 (539)
Q Consensus 450 ~~~~~ 454 (539)
.+++.
T Consensus 247 ~kvl~ 251 (308)
T KOG1585|consen 247 KKVLS 251 (308)
T ss_pred HHHHc
Confidence 77654
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.38 E-value=0.56 Score=40.39 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=124.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 009255 290 TFTYNAMIWGLSQSGKTEQAIDMLNELLQS-GMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLS 368 (539)
Q Consensus 290 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 368 (539)
...+......+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345555666666677777777766666542 122344455555566666667777777777776643222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC
Q 009255 369 -GLCREGILEKALKFFRSWILKGK--AVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGP-DRYTYAAIHTALVESG 444 (539)
Q Consensus 369 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 444 (539)
++...|+++.|...+.+...... ......+......+...++++.+...+.++.... .. ....+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence 56777888888888877754311 0122233334444566778888888888887542 22 3566677777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 445 RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-SISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 445 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+++.|...+....... |+ ...+..+...+...|..+++...+.+..+
T Consensus 217 ~~~~a~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 217 KYEEALEYYEKALELD-------------------PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cHHHHHHHHHHHHhhC-------------------cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888775 44 33555566666666778888888888876
No 250
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.37 E-value=0.0035 Score=34.24 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.8
Q ss_pred CCh-hhHHHHHHHHhhcCCHHHHHH
Q 009255 480 PSS-ISYSEKINEHCSQGRYKDALQ 503 (539)
Q Consensus 480 ~~~-~~~~~l~~~~~~~g~~~~A~~ 503 (539)
|+. .+|+.++.+|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 555 499999999999999999963
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.36 E-value=0.52 Score=39.77 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=43.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.+.+.|.+.|.+-.|..-+++|++. .+-+ ...+..+..+|...|-.++|.+.-.-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4567788889999999999999876 2222 345566778888999999988866555444
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.34 E-value=0.089 Score=39.51 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMK 37 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 37 (539)
|..++.+++.++++.|+.+....+++..-
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W 29 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW 29 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 45677778888888888887777776553
No 253
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.27 E-value=0.81 Score=41.08 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=57.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCC
Q 009255 260 TLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEG 339 (539)
Q Consensus 260 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (539)
.-+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-..+... .-++.-|..++.+|...|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33444455566655555544432 24666666666777777776665554321 113345666666666667
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFF 383 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 383 (539)
+..+|..+..++ + + ..-+..|.++|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 666666665551 1 1 33455566666666666543
No 254
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.18 E-value=0.005 Score=34.28 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=23.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+|..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 478999999999999999999999664
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.17 E-value=0.012 Score=32.20 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.9
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
.+|..++.+|...|++++|+..|+++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3789999999999999999999999998 5676
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.15 Score=47.90 Aligned_cols=155 Identities=18% Similarity=0.229 Sum_probs=77.5
Q ss_pred HHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 009255 20 LFKKGKLNEVRDLLS--DMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLE 97 (539)
Q Consensus 20 ~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 97 (539)
..-+++++++.++.+ ++... +| ..-.+.++..+.+.|-.+.|+++-..-. .-.....+.|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344666666655554 12211 12 3345566666666676666666533211 1233444566666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 009255 98 EAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNME 177 (539)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 177 (539)
.|.++.++. .+...|..|.......|+++-|.+.|.+... +..|+-.|...|+.+...++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 666543332 3555677777777777777777776666432 4455556666666666666665555
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 178 ENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 178 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 443 134444445555666666665544
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.14 E-value=2 Score=44.51 Aligned_cols=245 Identities=20% Similarity=0.203 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHH
Q 009255 168 KACKIVRNMEENGFSPDCVTYNTLIDANCKAG--NMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNS 245 (539)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 245 (539)
...+.++...... .|+ .-...++.+|++.+ .++.++....+...... .......+..++-.- .+..+|+.
T Consensus 775 ~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~---~~~ad~al~hll~Lv---dvn~lfn~ 846 (1265)
T KOG1920|consen 775 SVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV---AVSADEALKHLLFLV---DVNELFNS 846 (1265)
T ss_pred HHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc---chhHHHHHHHHHhhc---cHHHHHHh
Confidence 3334444433332 445 34456777888877 66777777666654211 111112222211111 11222222
Q ss_pred HhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 009255 246 ASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDE 325 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 325 (539)
+... -..--+++-+-..+.++.+-+-+++++... .++..-| .|+.| .++++.|+.-+..+- .
T Consensus 847 ALgt-----YDl~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~-------~ 908 (1265)
T KOG1920|consen 847 ALGT-----YDLDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG-------E 908 (1265)
T ss_pred hhcc-----cchHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC-------c
Confidence 2211 000112333344455566655555555532 1111111 12222 245555555444332 1
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 009255 326 TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTC----NILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTL 401 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 401 (539)
..|.-.+..-.+.|.+..|..++ .|+.+.+ ...+.-+...+.+++|.-+|+..-+ ....
T Consensus 909 ~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekA 971 (1265)
T KOG1920|consen 909 TYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKA 971 (1265)
T ss_pred cccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHH
Confidence 12333344445566666665544 3344433 3334444455667777766655422 2334
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYT--YAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
+.+|...|+|.+|+.+..++.. ..+... -..+..-+..++++-+|-++......
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 5667777888888877776641 122211 14566667777777777777766654
No 258
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.14 E-value=0.17 Score=40.53 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=58.0
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCC
Q 009255 405 LCKERRLEDAFGLLSEMEEKKLGPDR-----YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEID 479 (539)
Q Consensus 405 ~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (539)
+...|++++|..-|..++..- ++.. ..|..-+.++.+.+.++.|+.-..++++.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~------------------- 164 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN------------------- 164 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-------------------
Confidence 456677777777777766542 2221 223334455666777777777777777766
Q ss_pred CChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009255 480 PSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMN 522 (539)
Q Consensus 480 ~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 522 (539)
|+.. +.-..+.+|-+..++++|++-|+++++ ..|.....+.
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear~ 206 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREARE 206 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHHH
Confidence 5444 555556667777777777777777776 3455544433
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.09 E-value=0.31 Score=45.16 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEKKLG-PDRYTYAAIHTALVESGRLEEAQKFTSIMV 457 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 457 (539)
..+..++.+.|+.++|++.++++.+.... .+..+...|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34555556667777777777776643211 123345566667777777777777666653
No 260
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=1.7 Score=42.53 Aligned_cols=344 Identities=12% Similarity=0.119 Sum_probs=176.2
Q ss_pred CCCCCChhhHHH-----HHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--hHHHHHH-HHHHHcC
Q 009255 109 LKLLPDVVTYNT-----LINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKI--DKACKIV-RNMEENG 180 (539)
Q Consensus 109 ~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~-~~~~~~~ 180 (539)
.|++.+..-|.. ++.-+...+.+..|+++-.-+...-.. ....|.....-+.+..+. +.+.+.+ +++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 456666555543 566677788888888887776433222 145566666666665322 2222222 232221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHh
Q 009255 181 FSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLK----MNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEV 256 (539)
Q Consensus 181 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 256 (539)
. ....+|....+.....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+...- +..
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s 579 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS 579 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence 1 33446777777777889988888877642211100 011112222333334444444444333333220 000
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH-HH-CCCCCCHHhHHHHHHH
Q 009255 257 SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNEL-LQ-SGMIPDETTFNTIIHG 334 (539)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~~~~l~~~ 334 (539)
..+....+...|..+|.+..++. +..+ +-..|....+...+-.+.-+- .. ..+.+...........
T Consensus 580 ------~l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 ------SLFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred ------HHHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 01111223445555665544421 1111 112222222222222111111 00 0011222233344445
Q ss_pred HhcCCCHHHHH----------HHHHHHHh-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 335 FCSEGQVEKAL----------QFHNKMVE-KSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLIS 403 (539)
Q Consensus 335 ~~~~~~~~~a~----------~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 403 (539)
+.+.....-.. .+.+.+.. .+..-..-+.+.-+.-+..-|+..+|.++-.++. -||...|-.=+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 55444322111 11122211 1222233344555566677899999988877654 468888888888
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
++...++|++-.++-+... ++..|.-...+|.+.|+.++|.+++-+.-
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------------------------- 771 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------------------------- 771 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC--------------------------
Confidence 9999999987776655432 24567778899999999999999875432
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFE 506 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~ 506 (539)
-+.-...+|.+.|++.+|.+..-
T Consensus 772 ~l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 772 GLQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ChHHHHHHHHHhccHHHHHHHHH
Confidence 11256778888888888877643
No 261
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.91 E-value=1.4 Score=40.52 Aligned_cols=417 Identities=14% Similarity=0.132 Sum_probs=199.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCCHhHHHHHHHHHHhC--CCCC---------
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSG--YCKLGWLKEAMRVVDLMTQN--KSLP--------- 78 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~--~~~~--------- 78 (539)
..+.++++|.. ++.+.....+..+.+.. + ...|..+..+ +-+.+.++.|.+.+...... +..+
T Consensus 48 l~grilnAffl-~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFL-NNLDLMEKQLMELRQQF-G--KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHH-hhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 45677888864 46777777777776652 2 2234444433 34889999999888766554 2221
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CChhhHHHHHHHHhccCCHhHHHHHHHHHHhCC-CCCCH
Q 009255 79 ---DVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLL----PDVVTYNTLINRFFESGRSMEAFKLIDELDEHG-IKPNA 150 (539)
Q Consensus 79 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 150 (539)
+...=+..+..+...|++.++..+++++...=++ .+..+|+.++-.+.+ .+|-++.+.. ...-+
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~p 195 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYP 195 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccCh
Confidence 1112234567788999999999999888764333 677888876655433 2333442221 11111
Q ss_pred HHHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCHHhH-HHH
Q 009255 151 VTHNIMIKWYCKE-GKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKA--GNMEEAFRMMDVMGRKGLKMNTITL-NTI 226 (539)
Q Consensus 151 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~l 226 (539)
. |.-++..|.+. ...+. ..-..+.|.......++....-. ....--.++++.....-+.|+.... ..+
T Consensus 196 d-yYemilfY~kki~~~d~-------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L 267 (549)
T PF07079_consen 196 D-YYEMILFYLKKIHAFDQ-------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPL 267 (549)
T ss_pred H-HHHHHHHHHHHHHHHhh-------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHH
Confidence 2 22233333221 11111 00000112222222222211110 0111112222222222233332221 122
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcCCcc----CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHH-------H
Q 009255 227 LHTLCCEKKLDEAYMLLNSASKRGYYL----DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYN-------A 295 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 295 (539)
...+.+ +.+++..+.+.+......+ -...+..++....+.++...|...+.-+...++. ...-. .
T Consensus 268 ~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~--~svs~Kllls~~~ 343 (549)
T PF07079_consen 268 KQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR--ISVSEKLLLSPKV 343 (549)
T ss_pred HHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc--chhhhhhhcCHHH
Confidence 222222 3333333333332221000 1224555555666666666666666555443222 11111 1
Q ss_pred HHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHhHH---HHHHHHhcCCC-HHHHHHHHHHHHhCCCCCCHHhHHHHH
Q 009255 296 MIWGLSQ----SGKTEQAIDMLNELLQSGMIPDETTFN---TIIHGFCSEGQ-VEKALQFHNKMVEKSFKPDIVTCNILL 367 (539)
Q Consensus 296 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 367 (539)
+.+..+. .-+...=+.+|+......+. ...... ....-+.+.|. -++|..+++.+++-. +-|...-+.+.
T Consensus 344 lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~ 421 (549)
T PF07079_consen 344 LQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVF 421 (549)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHH
Confidence 1111110 11223334445554443322 111112 22233455555 788888888887752 22444333322
Q ss_pred H----HHHh---cCCHHHHHHHHHHHHHcCCCCChh----hHHHHHHH--HHccCChHHHHHHHHHHHhCCCCCCHhhHH
Q 009255 368 S----GLCR---EGILEKALKFFRSWILKGKAVDSV----TYNTLISS--LCKERRLEDAFGLLSEMEEKKLGPDRYTYA 434 (539)
Q Consensus 368 ~----~~~~---~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 434 (539)
. +|.. ...+..-.++-+-+.+.|.+|-.. .-|.|..+ +..+|++.++.-.-.-.. .+.|+..++.
T Consensus 422 ~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~R 499 (549)
T PF07079_consen 422 LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYR 499 (549)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHH
Confidence 2 2222 123344444444445556665433 33444433 346789888876544444 4789999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009255 435 AIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
.++-++....++++|..++..+
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHhC
Confidence 9999999999999999888654
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.81 E-value=0.19 Score=44.23 Aligned_cols=169 Identities=11% Similarity=0.053 Sum_probs=106.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHccCChHHHHHHHHHHHhCCC---CC--CHh
Q 009255 361 VTCNILLSGLCREGILEKALKFFRSWILK-GKAV---DSVTYNTLISSLCKERRLEDAFGLLSEMEEKKL---GP--DRY 431 (539)
Q Consensus 361 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~ 431 (539)
..|..+.+.+.+..++.+++.+-+.-... |..| .......+..++.-.+.++++++.|+.+..... .| ...
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34555666666666677777666554433 2222 112344567777778899999999998875411 11 235
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH-
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ- 510 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 510 (539)
++..+...+.+..|+++|.-+..++.+...... ...+...-...+...++-++...|+.-.|.+.-++..+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~--------l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG--------LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC--------cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 778899999999999999998888776542100 00000001112456777888899999999999888765
Q ss_pred ---cCCCCCHHHHHHHHHHHHhcCCchhhc
Q 009255 511 ---KGIAINKSTYMNLMNGLIKRRKSISKA 537 (539)
Q Consensus 511 ---~~~~p~~~~~~~~l~~~~~~~~~~~~A 537 (539)
.|-+|-..-....++-.+++.++.+.|
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 343343343444556678888877765
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.79 E-value=0.02 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
..|..++.++...|++++|++.|+++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3688899999999999999999999997 5665
No 264
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.78 E-value=0.054 Score=47.05 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh
Q 009255 404 SLCKERRLEDAFGLLSEMEEKKLGP-DRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS 482 (539)
Q Consensus 404 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (539)
-|.++|.+++|+..|...+.. .| |..++..-+.+|.+..++..|..-...++..+ ..-.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------------------~~Y~ 165 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------------------KLYV 165 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------------------HHHH
Confidence 355566666666666655532 33 44445555555666666666655555555543 1112
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
-+|..-+.+-...|+..+|.+-++.+++ +.|+.-.+
T Consensus 166 KAYSRR~~AR~~Lg~~~EAKkD~E~vL~--LEP~~~EL 201 (536)
T KOG4648|consen 166 KAYSRRMQARESLGNNMEAKKDCETVLA--LEPKNIEL 201 (536)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHh--hCcccHHH
Confidence 2555555555555666666666666664 45554433
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.76 E-value=0.37 Score=42.07 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=107.7
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH----HHHHHHHhcc
Q 009255 53 SGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTY----NTLINRFFES 128 (539)
Q Consensus 53 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 128 (539)
....-+|+..+|-..++++.+.-| .|...+...=.++...|+.......++++.-. ..++...| ..+.-++...
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 344577888888888988887643 36667776677888899988888888888654 12343332 3334455678
Q ss_pred CCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 009255 129 GRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEEN---GFSPDCVTYNTLIDANCKAGNMEEAF 205 (539)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (539)
|-+++|.+.-++..+.+. .|..........+-..|++.++.+.+.+-... +--.-..-|-...-.+...+.++.|+
T Consensus 189 g~y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred ccchhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999999988877643 36667777788888889999888877654321 10011223444455566778999999
Q ss_pred HHHHHHh
Q 009255 206 RMMDVMG 212 (539)
Q Consensus 206 ~~~~~~~ 212 (539)
++|+.-.
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9997543
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.74 E-value=0.69 Score=35.85 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
...++..+.+.+.+.....+++.+...+ +.++..++.++..|++.+. ....+.++. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--K----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c----cccCCHHHHHHHHHH
Confidence 3456666666667777777777776665 3566667777777765432 233333331 1 122333445566666
Q ss_pred cCChHHHHHHHHHH
Q 009255 93 AGMLEEAFRLRKEM 106 (539)
Q Consensus 93 ~g~~~~a~~~~~~~ 106 (539)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 66666666665554
No 267
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.72 E-value=1.8 Score=40.38 Aligned_cols=105 Identities=14% Similarity=0.107 Sum_probs=77.3
Q ss_pred CCChhhH-HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCccccc
Q 009255 392 AVDSVTY-NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTAL--VESGRLEEAQKFTSIMVETGKINHQVVQ 468 (539)
Q Consensus 392 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 468 (539)
.|+..++ +.++..+.+.|-+.+|...+..+... .+|+...+..++..- ...-+...++++|+.++...
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-------- 526 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-------- 526 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh--------
Confidence 4455554 56777888889999999999998865 356666666655432 22233888999999999877
Q ss_pred CCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 469 PNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
..++..|......-...|+.+.+-.++.++.+. +.|.
T Consensus 527 ----------g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~kt-l~~~ 563 (568)
T KOG2396|consen 527 ----------GADSDLWMDYMKEELPLGRPENCGQIYWRAMKT-LQGE 563 (568)
T ss_pred ----------CCChHHHHHHHHhhccCCCcccccHHHHHHHHh-hChh
Confidence 467778888888888899999999998888762 4443
No 268
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.70 E-value=0.72 Score=35.74 Aligned_cols=85 Identities=12% Similarity=0.016 Sum_probs=46.3
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc
Q 009255 49 NILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFES 128 (539)
Q Consensus 49 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 128 (539)
..++..+...+........++.+...+. .+...++.++..|++.+ ..+....++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3455556666667777777777766653 45566677777776543 2333333332 12233344455555555
Q ss_pred CCHhHHHHHHHHH
Q 009255 129 GRSMEAFKLIDEL 141 (539)
Q Consensus 129 ~~~~~a~~~~~~~ 141 (539)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=1.1 Score=37.49 Aligned_cols=22 Identities=14% Similarity=-0.118 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 009255 189 NTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 189 ~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
...|-.+.-..++..|...++.
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcc
Confidence 3334444445555566655555
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.63 E-value=1.3 Score=38.09 Aligned_cols=202 Identities=21% Similarity=0.134 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH-
Q 009255 256 VSYGTLITGYFRDEKANRALKLWDEMKER-QIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH- 333 (539)
Q Consensus 256 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 333 (539)
.........+...+....+...+...... ........+......+...++...+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44455555666666666666666665541 1222445555556666666677777777777665433321 11222222
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSF--KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL 411 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (539)
.+...|+++.+...+........ ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56777888888888887755321 1233334444444667788888888888887762211356677778888888888
Q ss_pred HHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 412 EDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.|...+...... .|+ ...+......+...+..+++...+.+.....
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999988888854 343 4445555555556777899999998888876
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.83 Score=35.81 Aligned_cols=121 Identities=10% Similarity=-0.005 Sum_probs=57.8
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH-----HHHHHhccC
Q 009255 56 CKLGWLKEAMRVVDLMTQNKSLPDVW-TYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNT-----LINRFFESG 129 (539)
Q Consensus 56 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~ 129 (539)
.+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-.....| ....- -...+...|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P--~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP--QIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc--chhhHHHHHHHHHHHhccc
Confidence 34455556666666665554331111 11122233445566666666666655432122 11111 112234556
Q ss_pred CHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 009255 130 RSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEE 178 (539)
Q Consensus 130 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 178 (539)
.++....-.+-+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666555555554443333344444555555566666666666666554
No 272
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.47 E-value=0.16 Score=40.12 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCCh
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVES----------GRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSS 482 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (539)
.|.+.++.....+ +.|...+..++.++... .-+++|+.-++.++..+ |+.
T Consensus 9 ~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------------------P~~ 68 (186)
T PF06552_consen 9 HARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------------------PNK 68 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------------------TT-
T ss_pred HHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------------------Cch
Confidence 3444444433322 34455555555444322 22456677777778876 776
Q ss_pred h-hHHHHHHHHhhcCC-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 483 I-SYSEKINEHCSQGR-----------YKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 483 ~-~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
. ++..++.+|...+. +++|...|+++.+ ..|++..|+.-|...
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 5 88899999886643 6777777888776 589999998877654
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.33 E-value=0.27 Score=42.47 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.++..++.++...|+++.+...++.++... |-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC------------------ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 356678888999999999999999999998 45566999999999999999999999998754
Q ss_pred -----cCCCCCHHHHHHHHHHH
Q 009255 511 -----KGIAINKSTYMNLMNGL 527 (539)
Q Consensus 511 -----~~~~p~~~~~~~~l~~~ 527 (539)
.|+.|...+...+...+
T Consensus 216 ~~~edlgi~P~~~~~~~y~~~~ 237 (280)
T COG3629 216 TLAEELGIDPAPELRALYEEIL 237 (280)
T ss_pred HhhhhcCCCccHHHHHHHHHHh
Confidence 67888888777666553
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.32 E-value=1.9 Score=38.16 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=50.0
Q ss_pred hHHHHHHHHhccCCHh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009255 117 TYNTLINRFFESGRSM---EAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLID 193 (539)
Q Consensus 117 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 193 (539)
++..++.+|...+..+ +|..+++.+... .+-.+..+..-++.+.+.++.+.+.+++.+|...- .-....+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 3455666666655543 344455555333 22234445455666666777777777777777642 112233333333
Q ss_pred HHH--hcCCHHHHHHHHHHHhhCCCCCCH
Q 009255 194 ANC--KAGNMEEAFRMMDVMGRKGLKMNT 220 (539)
Q Consensus 194 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 220 (539)
.+- .......+...+..+....+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 331 112234455555555444333333
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.31 E-value=0.62 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=12.4
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNK 350 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~ 350 (539)
+...|..|.......|+++-|.+.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 333444444444444444444444444
No 276
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.28 E-value=3.7 Score=41.25 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=89.8
Q ss_pred HHHHHHHHHh-CCCCC--ChhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCChh-----hHHHHHHHHhccCCHhHH
Q 009255 64 AMRVVDLMTQ-NKSLP--DVWTYNMLINGWC-NAGMLEEAFRLRKEMESLKLLPDVV-----TYNTLINRFFESGRSMEA 134 (539)
Q Consensus 64 a~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 134 (539)
|++.++.+.+ ..+.| ...++..+...+. ...+++.|...+++.....-.++.. ....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 5566666663 22222 2334455555555 5677888888877764432222211 1223455555555544 7
Q ss_pred HHHHHHHHhCC----CCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHHcC---CCCChhhHHHHHHHH--HhcCCHHHH
Q 009255 135 FKLIDELDEHG----IKPNAVTHNIM-IKWYCKEGKIDKACKIVRNMEENG---FSPDCVTYNTLIDAN--CKAGNMEEA 204 (539)
Q Consensus 135 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a 204 (539)
...+++..+.- ..+-...|..+ +..+...++...|.+.++.+...- ..|...++..++.+. ...+..+.+
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 77777654431 11222233333 222333367777887777765431 123333444444433 244555666
Q ss_pred HHHHHHHhhCC---------CCCCHHhHHHHHHHHh--ccCCHHHHHHHHHHH
Q 009255 205 FRMMDVMGRKG---------LKMNTITLNTILHTLC--CEKKLDEAYMLLNSA 246 (539)
Q Consensus 205 ~~~~~~~~~~~---------~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 246 (539)
.+.++.+.... ..|-..++..++..++ ..|+.+.+...++.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666553211 1233445555555444 556655665555444
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.18 E-value=4.8 Score=42.01 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=82.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh
Q 009255 257 SYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFC 336 (539)
Q Consensus 257 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 336 (539)
.|...++.-.+.+.+.+|+.++..-.+. -...|.+....+.+...+++|.-.|+..-+ ....+.+|.
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~ 976 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYK 976 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHH
Confidence 3444555555666677776666421111 123344445555666777777776654321 223456777
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFG 416 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 416 (539)
.+|+|.+|..+..++.... .--..+-..|+.-+...+++-+|-++..+.... ....+..+++...|++|+.
T Consensus 977 ~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlr 1047 (1265)
T KOG1920|consen 977 ECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALR 1047 (1265)
T ss_pred HhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHH
Confidence 8888888888877764321 001112255666777788888888887776543 1233445566667777776
Q ss_pred HHHHH
Q 009255 417 LLSEM 421 (539)
Q Consensus 417 ~~~~~ 421 (539)
+....
T Consensus 1048 va~~~ 1052 (1265)
T KOG1920|consen 1048 VASKA 1052 (1265)
T ss_pred HHHhc
Confidence 65544
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.08 E-value=1.3 Score=34.84 Aligned_cols=134 Identities=11% Similarity=0.086 Sum_probs=82.3
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---hHHHH
Q 009255 326 TTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIV-TCNILLSGLCREGILEKALKFFRSWILKGKAVDSV---TYNTL 401 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l 401 (539)
..|...++ ..+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-.....|-.. .-..-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34444443 345566778888888887765432111 12223344566788888888888877653333222 11122
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 402 ISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 402 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
...+...|.|+......+.+...+-+-....-..|+-+-.+.|++..|.++|..+....
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 34456788888888877776644322233445567777888899999999998888754
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.01 E-value=1.9 Score=38.26 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH
Q 009255 168 KACKIVRNMEENGFSPDCVTYNTL 191 (539)
Q Consensus 168 ~a~~~~~~~~~~~~~~~~~~~~~l 191 (539)
.+.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 445555555555555554444433
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=4.4 Score=40.54 Aligned_cols=178 Identities=16% Similarity=0.195 Sum_probs=111.6
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 48 YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPD--VWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRF 125 (539)
Q Consensus 48 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (539)
...-+..+.+..-++-|..+.+.-. ..++ ..........+.+.|++++|...|-+.... +.|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 3445566667777777777655432 2222 123344445566789999998887776543 1222 345666
Q ss_pred hccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 009255 126 FESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAF 205 (539)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 205 (539)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 7777777888888888888876 55556778899999999888777766644 3211 112445667777777777777
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 009255 206 RMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSA 246 (539)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (539)
.+-.+... +...+..++ -..+++++|.+.+..+
T Consensus 484 ~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66555432 333333333 3457777777776654
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.97 E-value=0.29 Score=41.57 Aligned_cols=116 Identities=20% Similarity=0.201 Sum_probs=66.7
Q ss_pred CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHH
Q 009255 78 PDVWTYNMLINGWCNA-----GMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVT 152 (539)
Q Consensus 78 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (539)
.+-..|...+..+... +.++=....++.|.+.|+..|..+|+.|++.+=+.. +.|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HH
Confidence 3555666666555432 445555566777777777778888877776653322 1111 11
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 009255 153 HNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNM-EEAFRMMDVMG 212 (539)
Q Consensus 153 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~ 212 (539)
+....-.|- .+-+-+++++++|...|+.||..+-..|+.++.+.+.. .+..+++-.|.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 221111121 12234677788888888888888877888887777653 33444444443
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.92 E-value=1.4 Score=35.41 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=65.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 009255 366 LLSGLCREGILEKALKFFRSWILKGKAVD--SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVES 443 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 443 (539)
+...+..++++++|+.-++........-+ ...-..|.+.....|.+|+|+..+......+. .......-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 45567788999999988887765411111 12234566777888999999998887653321 223344567888899
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009255 444 GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 444 g~~~~A~~~~~~~~~~~ 460 (539)
|+.++|+.-|+++++..
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 99999999999999876
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.72 E-value=0.4 Score=41.47 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHhhHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEE-----KKLGPDRYTYA 434 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~ 434 (539)
..++..++..+...|+.+.+...++++....+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 34566777788888888888888888887743 3777888888888888888888888888765 36677665554
Q ss_pred HHHHH
Q 009255 435 AIHTA 439 (539)
Q Consensus 435 ~l~~~ 439 (539)
....+
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 44443
No 284
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.71 E-value=0.048 Score=29.69 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
+|..++..|...|++++|...|+++++ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 688899999999999999999999987 4454
No 285
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.61 E-value=0.56 Score=37.17 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CC-------hHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcC-
Q 009255 377 EKALKFFRSWILKGKAVDSVTYNTLISSLCKE---RR-------LEDAFGLLSEMEEKKLGPDR-YTYAAIHTALVESG- 444 (539)
Q Consensus 377 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-------~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g- 444 (539)
+.|.+..+.....+ +.|...++....++... .. +++|+.-|++++ .+.|+. .++..++.++...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL--~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL--KINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHHHHHHh
Confidence 44455554433332 23555544444444332 22 334444555555 356764 67777777775433
Q ss_pred ----------CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 009255 445 ----------RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIA 514 (539)
Q Consensus 445 ----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (539)
.+++|.++|+++.... |+...|..-..... +|-++..++.+.+..
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~-------------------P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDED-------------------PNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH--------------------TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcC-------------------CCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 3667777888888876 99998876655543 466666666665433
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.59 E-value=1.8 Score=34.27 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 009255 171 KIVRNMEENGFSPDCVTYNTLIDANCKAGNMEE 203 (539)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 203 (539)
+.++.+.+.+++|+...+..++..+.+.|++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344445555666666666666666666666544
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.57 E-value=0.096 Score=29.02 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
++..++.+|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788888888888888888888554
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.45 E-value=2.3 Score=34.87 Aligned_cols=29 Identities=24% Similarity=0.062 Sum_probs=18.2
Q ss_pred HhHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 009255 221 ITLNTILHTLCCEKKLDEAYMLLNSASKR 249 (539)
Q Consensus 221 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 249 (539)
.||.-+.+.+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45566666666666666666666666554
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.44 E-value=1.5 Score=32.67 Aligned_cols=138 Identities=16% Similarity=0.205 Sum_probs=65.4
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 009255 337 SEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFG 416 (539)
Q Consensus 337 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 416 (539)
-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+ |.-.|. ...|+....+.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHHH
Confidence 356666666666666553 24444444443333332333333333332 222222 12334444444
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcC
Q 009255 417 LLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQG 496 (539)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 496 (539)
.+-.+ ..+...+...+..+..+|+.+.-.+++..+.+.+ .+++.....++.+|.+.|
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~------------------~~~p~~L~kia~Ay~klg 134 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE------------------EINPEFLVKIANAYKKLG 134 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----------------------S-HHHHHHHHHHHHHTT
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc------------------CCCHHHHHHHHHHHHHhc
Confidence 33322 1233344455566667777777777777766543 466667777777777777
Q ss_pred CHHHHHHHHHHHHHcCC
Q 009255 497 RYKDALQIFEETRQKGI 513 (539)
Q Consensus 497 ~~~~A~~~~~~~~~~~~ 513 (539)
+..+|.++++++-+.|+
T Consensus 135 ~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 135 NTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHHTT-
T ss_pred chhhHHHHHHHHHHhch
Confidence 77777777777776663
No 290
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.34 E-value=1.6 Score=32.55 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=24.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 009255 367 LSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKK 425 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 425 (539)
+......|.-+.-.++...+.+. ..+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444444444444444444331 23344444455555555555555555555554444
No 291
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.32 E-value=6.7 Score=39.68 Aligned_cols=230 Identities=15% Similarity=0.024 Sum_probs=125.6
Q ss_pred HHhccCCHHHHHHHHHHHhhcCCccCHh-------hHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHhhHHHH
Q 009255 229 TLCCEKKLDEAYMLLNSASKRGYYLDEV-------SYGTLI-TGYFRDEKANRALKLWDEMKER----QIMPSTFTYNAM 296 (539)
Q Consensus 229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 296 (539)
......++++|..++.++...-..|+.. .+..|- ......|+++.|.++.+..... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788889988888876643222211 223222 2234578899999988877654 222345567777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh---HHHH--HHHHhcCCCHHHH--HHHHHHHHhC-----C-CCCCHHhH
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETT---FNTI--IHGFCSEGQVEKA--LQFHNKMVEK-----S-FKPDIVTC 363 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~~~a--~~~~~~~~~~-----~-~~~~~~~~ 363 (539)
..+..-.|++++|..+..+..+..-..+... +..+ ...+...|+...+ ...+...... + ..+-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7888889999999999887665422222222 2222 2334556643322 2223322221 1 01223344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HhhHHHH
Q 009255 364 NILLSGLCRE-GILEKALKFFRSWILKGKAVDSVT--YNTLISSLCKERRLEDAFGLLSEMEEKKLGPD----RYTYAAI 436 (539)
Q Consensus 364 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l 436 (539)
..+..++.+. +...++..-+.-.......|-... +..|+..+...|+.++|...+.++......+. ..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 5555555542 222233333322222222222222 23677888889999999999999876533332 2222222
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHH
Q 009255 437 HT--ALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 437 ~~--~~~~~g~~~~A~~~~~~~~~ 458 (539)
++ .....|+.+.+..+..+...
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhccC
Confidence 22 23468999999888777443
No 292
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.28 E-value=3.6 Score=36.43 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=88.4
Q ss_pred HhHHHHHHHHhcCCCHH---HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 009255 326 TTFNTIIHGFCSEGQVE---KALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLI 402 (539)
Q Consensus 326 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 402 (539)
.++..++.++...+..+ +|..+++.+... .+..+.++..-++.+.+.++.+.+.+.+.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35666777777766544 455555555443 22235555556666767888888888888888762 21223444444
Q ss_pred HHHH--ccCChHHHHHHHHHHHhCCCCCCHh-hHHHH-H-H--HHHhcCC------HHHHHHHHHHHHHcCCCCcccccC
Q 009255 403 SSLC--KERRLEDAFGLLSEMEEKKLGPDRY-TYAAI-H-T--ALVESGR------LEEAQKFTSIMVETGKINHQVVQP 469 (539)
Q Consensus 403 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l-~-~--~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~ 469 (539)
..+. .......|...+..+....+.|... ....+ + . .....++ .+...++++.+.+....
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~------- 235 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK------- 235 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC-------
Confidence 4432 1233456777777766555555543 21111 1 1 1222222 33344444433322211
Q ss_pred CCCCCCCCCCCChhh---HH----HHHHHHhhcCCHHHHHHHHHHHH
Q 009255 470 NTSKTPEEIDPSSIS---YS----EKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 470 ~~~~~~~~~~~~~~~---~~----~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
+.+..+ .. .-+....++++|+.|.+.|+-.+
T Consensus 236 ---------~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 236 ---------QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 122222 11 22556678899999999999665
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.18 E-value=0.092 Score=30.52 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009255 486 SEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLM 524 (539)
Q Consensus 486 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l 524 (539)
..++.+|...|+.+.|.+++++++..|-.|-......++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468899999999999999999999755333333444443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.13 E-value=0.17 Score=27.37 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+..++.++...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356678888889999999999999998876
No 295
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.11 E-value=0.75 Score=37.22 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=62.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCC
Q 009255 397 TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKT 474 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (539)
.+..++..|.+.|+.+.|++.|.++.+....+. ...+..+++.....+++..+...+.++........
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~---------- 107 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG---------- 107 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc----------
Confidence 566777888888888888888888877654444 34556777777788888888888777765532100
Q ss_pred CCCCCCChhhHH--HHHHHHhhcCCHHHHHHHHHHHH
Q 009255 475 PEEIDPSSISYS--EKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 475 ~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
+++...-. .-+-.+...+++.+|.+.|-...
T Consensus 108 ----d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 108 ----DWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ----hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 01111111 11223445788888888877665
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.09 E-value=0.18 Score=27.35 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+|..++.++...|++++|++.++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 457778888888999999999999988876
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.98 E-value=1.1 Score=36.33 Aligned_cols=96 Identities=18% Similarity=0.054 Sum_probs=58.0
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH---HH
Q 009255 47 TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLP--DVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYN---TL 121 (539)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~l 121 (539)
.+..++..|.+.|+.+.|.+.|.++......+ -...+-.+|......|++..+.....+....--.+...... ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 66677788888888888888888877653322 23455667777777788877777776655431111111111 11
Q ss_pred --HHHHhccCCHhHHHHHHHHHH
Q 009255 122 --INRFFESGRSMEAFKLIDELD 142 (539)
Q Consensus 122 --~~~~~~~~~~~~a~~~~~~~~ 142 (539)
.-.+...+++..|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 122344677877777776654
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.86 E-value=5.4 Score=36.88 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=47.9
Q ss_pred CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 324 DETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKP---DIVTCNILLSGLCREGILEKALKFFRSWIL 388 (539)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 388 (539)
...++..++..+.+.|.++.|...+..+...+... .+.+...-++.....|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577778888888899998888888887643211 345555566777788888888888888776
No 299
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.82 E-value=3.2 Score=34.13 Aligned_cols=182 Identities=13% Similarity=0.047 Sum_probs=105.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHH
Q 009255 267 RDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQ 346 (539)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 346 (539)
..|-+.-|.--|.+.....+. -+..||.+.-.+...|+++.|.+.|+...+..+.-+-...+.-+. +.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 334455555556665554433 467788888888888999999999988887655544444444443 334578888887
Q ss_pred HHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC
Q 009255 347 FHNKMVEKSFK-PDIVTCNILLSGLCREGILEKALKFFR-SWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 347 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
-+...-+.... |-...|..+. ...-++.+|..-+. +.... +..-|...+..+.- |... ...+++++...
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh
Confidence 77766665322 2122222222 23446666665443 33322 44555444333322 2211 12233343322
Q ss_pred CCCCC-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 425 KLGPD-------RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 425 ~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
-..+ ..+|..+++-+...|+.++|..+|+.++..+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 1211 2467778888899999999999999988765
No 300
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.73 E-value=3.9 Score=34.81 Aligned_cols=58 Identities=14% Similarity=0.046 Sum_probs=28.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCC------CChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 009255 365 ILLSGLCREGILEKALKFFRSWILK-----GKA------VDSVTYNTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
.+...|...|++..-.++++++... |.. .-...|..-+..|..+.+-.+-..+|++.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 4455555555555555555554432 000 012234444555655555555555666554
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.73 E-value=6.2 Score=37.14 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=42.3
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 009255 254 DEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIH 333 (539)
Q Consensus 254 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (539)
|.....+++..+..+..+.-...+..+|+..+ .+...+..++..|... ..+.-..+|+++.+..+. +...-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444445555555544555555555554432 1344455555555544 344445555555544322 2222222333
Q ss_pred HHhcCCCHHHHHHHHHHHHh
Q 009255 334 GFCSEGQVEKALQFHNKMVE 353 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~ 353 (539)
.|.+ ++.+++..+|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 2222 444555555554443
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.70 E-value=0.46 Score=43.63 Aligned_cols=123 Identities=12% Similarity=0.046 Sum_probs=66.6
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDA 414 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 414 (539)
-...||.-.|-+-+...++.. +.++.............|+++.+...+...... ......+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 345566666554444444331 222233333333455667777777766554332 222444566666777777777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 415 FGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+-.-|....+. +.++....+......|-++++.-.|++....+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 7777766654432 33333333333444566777777777776665
No 303
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.64 E-value=0.74 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 009255 96 LEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRS 131 (539)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 131 (539)
-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 139 Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 139 QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 456889999999999999999999999988776653
No 304
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.40 E-value=2.1 Score=34.58 Aligned_cols=88 Identities=22% Similarity=0.195 Sum_probs=60.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhc
Q 009255 370 LCREGILEKALKFFRSWILKGKAVD-----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVES 443 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 443 (539)
+...|++++|..-|..+++. .++. ...|..-+.+..+.+.++.|+.-..++++. .|+ ...+..-+.+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHhh
Confidence 45567777777777777765 2222 224555556777788888888877777754 343 34445556678888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009255 444 GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 444 g~~~~A~~~~~~~~~~~ 460 (539)
..+++|++-|.++++.+
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888876
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.30 E-value=0.12 Score=27.74 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=26.5
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
++..++.++.+.|++++|.+.|+++++. .|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 4567889999999999999999999974 565
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.29 E-value=0.094 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCchhhccC
Q 009255 505 FEETRQKGIAINKSTYMNLMNGLIKRRKSISKAVD 539 (539)
Q Consensus 505 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 539 (539)
|+++++ +.|++......++.++...|++++|+.
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 677887 679998888888878888888999974
No 307
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.27 E-value=1.4 Score=33.77 Aligned_cols=73 Identities=14% Similarity=0.021 Sum_probs=48.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINK 517 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 517 (539)
.-...++.+++..++..+.-.. |+.. .-..-+..+...|+|.+|+++++++.+.+ +..
T Consensus 19 ~aL~~~d~~D~e~lLdALrvLr-------------------P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~--~~~ 77 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRVLR-------------------PNLKELDMFDGWLLIARGNYDEAARILRELLSSA--GAP 77 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-------------------CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC--CCc
Confidence 3345788999999988888776 4443 33334556788999999999999988743 343
Q ss_pred HHHHHHHHHHHhcCC
Q 009255 518 STYMNLMNGLIKRRK 532 (539)
Q Consensus 518 ~~~~~~l~~~~~~~~ 532 (539)
.-...++..|+...+
T Consensus 78 p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 78 PYGKALLALCLNAKG 92 (153)
T ss_pred hHHHHHHHHHHHhcC
Confidence 444455555554433
No 308
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.15 E-value=2.6 Score=31.62 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh--hHHHHHHHHhhcCCHHHH
Q 009255 427 GPDRYTYAAIHTALVESGR---LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKINEHCSQGRYKDA 501 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A 501 (539)
.++..+...+++++.+..+ ..+.+.+++.+.+.. +|+.. -.+.|+-++.+.|+|+.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~------------------~~~~rRe~lyYLAvg~yRlkeY~~s 90 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA------------------HPERRRECLYYLAVGHYRLKEYSKS 90 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc------------------CcccchhhhhhhHHHHHHHhhHHHH
Confidence 5666777778888876654 445667777777622 23332 445566678888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 502 LQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 502 ~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+++.+.+++ ..||+.....+-.
T Consensus 91 ~~yvd~ll~--~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 91 LRYVDALLE--TEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHh--hCCCcHHHHHHHH
Confidence 888888887 4677766555433
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.13 E-value=0.2 Score=28.76 Aligned_cols=28 Identities=32% Similarity=0.532 Sum_probs=24.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 483 ISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 483 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.++++++..|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999999876
No 310
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.87 E-value=8.4 Score=36.21 Aligned_cols=224 Identities=12% Similarity=0.153 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHcC------CCHHHHHHHHHHHHHCC-CCC-CHHhHHHHHHHHhcCCCHHH-
Q 009255 273 RALKLWDEMKERQIMPSTFTYNAMIWGLSQS------GKTEQAIDMLNELLQSG-MIP-DETTFNTIIHGFCSEGQVEK- 343 (539)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~- 343 (539)
....+|++.... .|+...|+..|..|... ......+.+++.....+ ..+ ....|..+...+........
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 334666665553 34566666666655432 13444555555554432 222 23455555555555444333
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhc-CCHHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHccCC-hHHH-HH-HH
Q 009255 344 ALQFHNKMVEKSFKPDIVTCNILLSGLCRE-GILEK-ALKFFRSWILKGKAVDSVTYNTLISSLCKERR-LEDA-FG-LL 418 (539)
Q Consensus 344 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A-~~-~~ 418 (539)
|..+.... +..+...|..-+....+. .+++- -..+|..+...-..+....|+... .|+ .+.. .. ++
T Consensus 378 a~~l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii 448 (568)
T KOG2396|consen 378 AVKLTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII 448 (568)
T ss_pred HHHhhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence 33333233 334556665555444422 12211 111222222221122223333333 222 1111 11 22
Q ss_pred HHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhh--c
Q 009255 419 SEMEEKKLGPDRYTYA-AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCS--Q 495 (539)
Q Consensus 419 ~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ 495 (539)
..... -..|+..++. .+.+-+.+.|-..+|.+.+..+.... ||+...+..++..--. .
T Consensus 449 ~a~~s-~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp------------------p~sl~l~r~miq~e~~~~s 509 (568)
T KOG2396|consen 449 SALLS-VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP------------------PFSLDLFRKMIQFEKEQES 509 (568)
T ss_pred HHHHH-hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC------------------CccHHHHHHHHHHHhhHhh
Confidence 22222 2356655554 56677788899999999999999987 6777788877766443 3
Q ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 009255 496 GRYKDALQIFEETRQ-KGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 496 g~~~~A~~~~~~~~~-~~~~p~~~~~~~~l~~~~ 528 (539)
.+...++..|+.|.. -| .|...|..++..-.
T Consensus 510 c~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 510 CNLANIREYYDRALREFG--ADSDLWMDYMKEEL 541 (568)
T ss_pred cCchHHHHHHHHHHHHhC--CChHHHHHHHHhhc
Confidence 458899999999986 44 67778887776444
No 311
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.84 E-value=7.9 Score=35.78 Aligned_cols=66 Identities=18% Similarity=0.154 Sum_probs=52.6
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 009255 289 STFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIP---DETTFNTIIHGFCSEGQVEKALQFHNKMVEK 354 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (539)
...+|..++..+.+.|.++.|...+.++....... .+.....-+......|+..+|...++..+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55678889999999999999999999988754222 3445555667788899999999999988873
No 312
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.73 E-value=8.2 Score=35.73 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCC
Q 009255 395 SVTYNTLISSLCKERRLEDAFGLLSEMEEKK-LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSK 473 (539)
Q Consensus 395 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 473 (539)
...|..++..-.+..-.+.|..+|-++.+.+ +.++..++.+.+.-++ .|+...|-.+|+..+...
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f------------- 462 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF------------- 462 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-------------
Confidence 4467777777777788899999999999887 5677777777776554 789999999999998887
Q ss_pred CCCCCCCChhhH-HHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 474 TPEEIDPSSISY-SEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 474 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
||...| +-....+...++-+.|..+|++.++
T Consensus 463 ------~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 463 ------PDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred ------CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 777754 4566778889999999999996665
No 313
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.69 E-value=6.3 Score=34.29 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=75.6
Q ss_pred CCHhHHHHHHHHHHh-CCCCCChhhHHHHHHHHHh-cCC-hHHHHHHHHHHHh-CCCCCChhhHHHHHHHHhccCCHhHH
Q 009255 59 GWLKEAMRVVDLMTQ-NKSLPDVWTYNMLINGWCN-AGM-LEEAFRLRKEMES-LKLLPDVVTYNTLINRFFESGRSMEA 134 (539)
Q Consensus 59 g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 134 (539)
..+.+|+.+|+.... ..+-.|..+...+++.... .+. ...-.++.+-+.. .+..++..+...++..++..+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344556666653221 1122355555555555544 111 1222222222222 22456667777777888888888887
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH-----HHHcCCCCChhhHHHHHHHH
Q 009255 135 FKLIDELDEH-GIKPNAVTHNIMIKWYCKEGKIDKACKIVRN-----MEENGFSPDCVTYNTLIDAN 195 (539)
Q Consensus 135 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 195 (539)
.++++..... +..-|...|..+++.....|+..-...+..+ +.+.++..+...-..+-+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 7777776554 4555777788888888888887666665543 23345555555544444443
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.64 E-value=0.56 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009255 485 YSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGL 527 (539)
Q Consensus 485 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~ 527 (539)
...++-++.+.|++++|.+..+.+++ ..|++.....+...+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 45677789999999999999999998 689998887776544
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.57 E-value=0.25 Score=26.47 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=24.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..++.++.+.|++++|.+.++++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34567788888999999999999999887
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.50 E-value=4.2 Score=31.83 Aligned_cols=50 Identities=22% Similarity=0.282 Sum_probs=21.6
Q ss_pred ccCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009255 57 KLGWLKEAMRVVDLMTQNKSL-PDVWTYNMLINGWCNAGMLEEAFRLRKEMES 108 (539)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (539)
+.++.+.+..++..+.-..+. +...++. ...+...|++.+|.++|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhc
Confidence 444555555555555443221 1111222 1223445555555555555544
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.45 E-value=4.3 Score=31.80 Aligned_cols=77 Identities=17% Similarity=0.029 Sum_probs=43.8
Q ss_pred HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 361 VTCNILLSG---LCREGILEKALKFFRSWILKGKAVDSVTY-NTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 361 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
.+...|+.. -.+.++.+++..+++.+.-. .|..... ..-+..+...|+|.+|+.+|+++.+. .|....-..+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 344444443 34567788888888777665 3443322 23345567778888888888887654 3433333344
Q ss_pred HHHHH
Q 009255 437 HTALV 441 (539)
Q Consensus 437 ~~~~~ 441 (539)
...|.
T Consensus 84 lA~CL 88 (160)
T PF09613_consen 84 LALCL 88 (160)
T ss_pred HHHHH
Confidence 43333
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.05 E-value=3.2 Score=29.37 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 009255 11 VTYNTILDALFKKGKLN--EVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLIN 88 (539)
Q Consensus 11 ~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 88 (539)
..|..--..+....+.+ +..+-++.+...++.|++.+..+.+++|.+.+++..|..+|+.+...- .+....|..++.
T Consensus 9 eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 9 EEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 33444444444444433 567777777777778888888888888888888888888888776541 112225555543
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.05 E-value=4.5 Score=31.13 Aligned_cols=51 Identities=16% Similarity=0.111 Sum_probs=24.2
Q ss_pred ccCCHhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009255 57 KLGWLKEAMRVVDLMTQNKSL-PDVWTYNMLINGWCNAGMLEEAFRLRKEMESL 109 (539)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (539)
..++.+++..+++.+.-..+. +...++... .+...|++.+|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence 355555555555555543222 122222222 234556666666666665543
No 320
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.88 E-value=6.7 Score=32.79 Aligned_cols=132 Identities=10% Similarity=0.041 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHc----C-CCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHhC--C---CCCCHhhHHHHHHHHH
Q 009255 373 EGILEKALKFFRSWILK----G-KAVDSVTYNTLISSLCKE-RRLEDAFGLLSEMEEK--K---LGPDRYTYAAIHTALV 441 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~---~~~~~~~~~~l~~~~~ 441 (539)
.+++++|...++..++. | +..-...+..+...|-.. .++++|+..|++.-+. | .......+..++.--.
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 34666666665554432 0 000111222344445433 6778888888877653 1 1112234445555556
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 442 ESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 442 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
..+++.+|+++|++.......+ .. ..-..- .+..-+-++...++.-.+...+++-.+ +.|+..
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n-~L-----------LKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~F~ 229 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDN-NL-----------LKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-hH-----------HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCccc
Confidence 7899999999999988765210 00 000111 111222233334677777777777776 456543
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.85 E-value=3.4 Score=33.69 Aligned_cols=75 Identities=11% Similarity=0.004 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINE 491 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 491 (539)
+.|.+.|-++...+.-.++.....++. +....+.+++++++-++++.....+ .+++..+.+|+..
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~--------------~~n~eil~sLas~ 187 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDD--------------NFNPEILKSLASI 187 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCC--------------CCCHHHHHHHHHH
Confidence 455555555554433333333333333 3334555666666666655542210 2444556666666
Q ss_pred HhhcCCHHHH
Q 009255 492 HCSQGRYKDA 501 (539)
Q Consensus 492 ~~~~g~~~~A 501 (539)
|.+.|+++.|
T Consensus 188 ~~~~~~~e~A 197 (203)
T PF11207_consen 188 YQKLKNYEQA 197 (203)
T ss_pred HHHhcchhhh
Confidence 6666666555
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.77 E-value=0.27 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=20.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
....++.++...|++++|.+++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 456789999999999999998863
No 323
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.75 E-value=9.3 Score=34.17 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-----C-
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR----EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE-----R- 409 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~- 409 (539)
+...|..+|....+.| .......+..+|.. ..+..+|.+.++++...|..+-......+...|... -
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 4566666666555544 23333334444444 236677777777777765443222233444444332 1
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhh
Q 009255 410 -RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVE----SGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSIS 484 (539)
Q Consensus 410 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (539)
+...|...+.++...+ +......++..|.. ..++++|..+|.++.+.+ . ...
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g-------------------~-~~a 225 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG-------------------D-GAA 225 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-------------------C-HHH
Confidence 2236888888887765 44445555555543 347889999999998887 3 445
Q ss_pred HHHHHHHHhhcC---------------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 485 YSEKINEHCSQG---------------RYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 485 ~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
...+. .+...| +...|...+......+.........
T Consensus 226 ~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 226 CYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 55555 555444 8888999999988876444444444
No 324
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.68 E-value=0.14 Score=44.70 Aligned_cols=85 Identities=21% Similarity=0.174 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHH
Q 009255 373 EGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR-YTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 451 (539)
.|.++.|+..|...+... ++....|..-..++.+.+.+..|+.=+..+.. +.||. ..|-.-..+....|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHHHH
Confidence 445555555555555441 22333444444555555555555555544443 23332 222223333444455555555
Q ss_pred HHHHHHHcC
Q 009255 452 FTSIMVETG 460 (539)
Q Consensus 452 ~~~~~~~~~ 460 (539)
.+..+.+.+
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555555554
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.64 E-value=3 Score=34.96 Aligned_cols=104 Identities=15% Similarity=0.062 Sum_probs=61.3
Q ss_pred HccCChHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHhcCCHHHHHHHH-------HHHHHcCCCCcccccCCCC
Q 009255 406 CKERRLEDAFGLLSEMEEK----KLGPD--RYTYAAIHTALVESGRLEEAQKFT-------SIMVETGKINHQVVQPNTS 472 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~~~~~~~~~~~~~~ 472 (539)
.....+++|++.+.-+.-. +.+|. ...+..+++.|...|+.+....++ +++.+....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~---------- 157 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF---------- 157 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC----------
Confidence 3344556666655544321 22344 345667788888888865544444 444443311
Q ss_pred CCCCCCC-CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009255 473 KTPEEID-PSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMN 522 (539)
Q Consensus 473 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 522 (539)
...+ ........++....+.|++++|.+.|.+++..+-.+....+..
T Consensus 158 ---~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~ 205 (214)
T PF09986_consen 158 ---PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKD 205 (214)
T ss_pred ---CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 0001 1123666788889999999999999999997554444333333
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.64 E-value=5.8 Score=31.54 Aligned_cols=133 Identities=13% Similarity=0.241 Sum_probs=59.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 009255 31 DLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLK 110 (539)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 110 (539)
+.++.+.+.+++|+...+..++..+.+.|++.....++ +.++-+|.......+-.+ .+....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence 44455555666666666667777777666654443333 233333433333222111 12222333333333221
Q ss_pred CCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 009255 111 LLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNME 177 (539)
Q Consensus 111 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 177 (539)
=...+..+++.+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0013444555566666666666666554221 11112334444444555444444444433
No 327
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.60 E-value=9.6 Score=33.99 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=10.4
Q ss_pred HHHHHHHHHHcCCCCChhhHH
Q 009255 169 ACKIVRNMEENGFSPDCVTYN 189 (539)
Q Consensus 169 a~~~~~~~~~~~~~~~~~~~~ 189 (539)
..++++.+.+.|+..+..+|-
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 344555555555554444433
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.43 E-value=8.9 Score=33.29 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+......|..+|.+.+|.++.++++..+ +.+...|..++..|...|+--+|...|+++-+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld------------------pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD------------------PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC------------------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4456678899999999999999999998 45666999999999999998889888887653
No 329
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.20 E-value=18 Score=36.40 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=8.3
Q ss_pred HHhcCCHHHHHHHHHH
Q 009255 195 NCKAGNMEEAFRMMDV 210 (539)
Q Consensus 195 ~~~~~~~~~a~~~~~~ 210 (539)
+.-.|+++.|++.+..
T Consensus 268 LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 268 LLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHTT-HHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHh
Confidence 3445666666665544
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=2.5 Score=35.31 Aligned_cols=122 Identities=11% Similarity=-0.028 Sum_probs=76.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHH
Q 009255 370 LCREGILEKALKFFRSWILKGKAVDSV-TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDR-YTYAAIHTALVESGRLE 447 (539)
Q Consensus 370 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~ 447 (539)
|.....+..|+..+.+.+.. .|++. -|..-+.++.+.++++.+..--.++++ +.||. .....++.+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 45556788888877777764 45554 345666777778888888777666664 35553 34445666777778888
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 009255 448 EAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEET 508 (539)
Q Consensus 448 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 508 (539)
+|+..+.++...... ..+++....+..|..+--..=...++.++.++.
T Consensus 96 eaI~~Lqra~sl~r~-------------~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLRE-------------QPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhc-------------CCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 888888888554421 111334447777666554444455555555544
No 331
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.78 E-value=3.9 Score=33.36 Aligned_cols=77 Identities=17% Similarity=0.061 Sum_probs=47.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHhcCCHHH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK---KLGPDRYTYAAIHTALVESGRLEE 448 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 448 (539)
+.|+ +.|.+.|-.+...+.--++.....|+..|. ..+.++++.++-++.+. +-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 556666666655544445555555555444 45677777777776654 224566777777777777777777
Q ss_pred HH
Q 009255 449 AQ 450 (539)
Q Consensus 449 A~ 450 (539)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 332
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.70 E-value=0.73 Score=42.56 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEKKLGPDRYTYA-AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS 481 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (539)
......+.++.|+.++.++++. .||...|. .-..++.+.+++..|..=..++++.. |+
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-------------------P~ 70 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-------------------PT 70 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-------------------ch
Confidence 3445667888888888888854 67655444 33467778888888888888888876 55
Q ss_pred hh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 482 SI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 482 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
.. .|..-+.++.+.+++.+|+..|+.... +.|+...+...+..|-
T Consensus 71 ~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 71 YIKAYVRRGTAVMALGEFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred hhheeeeccHHHHhHHHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 55 777777778888888888888888875 6788888877777664
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=9.3 Score=32.01 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHc--CCCCChh---hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhH------
Q 009255 366 LLSGLCRE-GILEKALKFFRSWILK--GKAVDSV---TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTY------ 433 (539)
Q Consensus 366 l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------ 433 (539)
+...|... .+++.|+..+++.-+- |-..+.. .+.....--...+++.+|+.+|++.....+..+.--|
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 4556666666555432 1111222 2222333334567888999999888765443332222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
...+-++.-..+.-.+...+++..+.+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 112222333467777778888888876
No 334
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.54 E-value=15 Score=34.48 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=78.0
Q ss_pred HHHHccCChHHHHHHHHHHHhC---CCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCC--CC
Q 009255 403 SSLCKERRLEDAFGLLSEMEEK---KLGPDR-----YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPN--TS 472 (539)
Q Consensus 403 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~ 472 (539)
..+.-.|++.+|.+++...--. |...+. ..++.++-.+.+.|.+.-+..+|.++++.... +.-.+. ..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~--qL~~g~~~~~ 325 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS--QLRNGLKPAK 325 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH--HHhccCCCCc
Confidence 4455678999998887654211 212221 12345666667888888888888888862110 000000 11
Q ss_pred CCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 473 KTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 473 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
.............++.+-.|...|++-.|.+.|.+..+. +..+.-.|..+.-+|.
T Consensus 326 ~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 326 TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 112222234446677888999999999999999999874 6777788888887775
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.51 E-value=21 Score=36.02 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=105.1
Q ss_pred HHHHHHHHHH-hCCCCCCHH--HHHHHHHHHH-ccCCHhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCChHH
Q 009255 28 EVRDLLSDMK-KQGLVPNRT--TYNILVSGYC-KLGWLKEAMRVVDLMTQNKSLPDVW-----TYNMLINGWCNAGMLEE 98 (539)
Q Consensus 28 ~a~~~~~~~~-~~~~~~~~~--~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 98 (539)
.|+..++.+. +..++|... ++..++..+. ...+++.|...+++.......++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3567777777 334444333 5566676666 7889999999999875442222221 2234556666666555
Q ss_pred HHHHHHHHHhCCCC----CChhhHHHH-HHHHhccCCHhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCHhH
Q 009255 99 AFRLRKEMESLKLL----PDVVTYNTL-INRFFESGRSMEAFKLIDELDEHG---IKPNAVTHNIMIKWYC--KEGKIDK 168 (539)
Q Consensus 99 a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 168 (539)
|.+.+++..+.--. +-...+..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 88888886653111 112223333 233333479999999998886542 2333444444544443 4555666
Q ss_pred HHHHHHHHHHcC---------CCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHh
Q 009255 169 ACKIVRNMEENG---------FSPDCVTYNTLIDAN--CKAGNMEEAFRMMDVMG 212 (539)
Q Consensus 169 a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 212 (539)
+.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777776663321 123445666666554 46777777777666553
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.50 E-value=0.77 Score=26.19 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++..++.+|...|++++|.++++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467788888888899999999888887654
No 337
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=90.43 E-value=14 Score=36.81 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHH
Q 009255 45 RTTYNILVSGYCKLGWLKEAMRVVDL 70 (539)
Q Consensus 45 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 70 (539)
+.-|. .+..+.-+|.++.|.+++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 44554 45566667777777777643
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=21 Score=35.76 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=62.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 009255 17 LDALFKKGKLNEVRDLLSDMKKQGLVP---NRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNA 93 (539)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (539)
++.+.+.+.+++|+...+..... .+ -......++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45566778888888777765543 22 2335667777777888888888887777753 555666666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 009255 94 GMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE 127 (539)
Q Consensus 94 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (539)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655433222 2222112345567777766655
No 339
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.01 E-value=17 Score=34.19 Aligned_cols=109 Identities=14% Similarity=-0.003 Sum_probs=76.3
Q ss_pred HHHhcCCHHHHHHHHHHHHH---cCCCCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHh-------CCCCCCH---
Q 009255 369 GLCREGILEKALKFFRSWIL---KGKAVD-----SVTYNTLISSLCKERRLEDAFGLLSEMEE-------KKLGPDR--- 430 (539)
Q Consensus 369 ~~~~~g~~~~A~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~--- 430 (539)
.+...|++..|.+++...-- .|...+ -..||.|...+.+.|.+.-+..+|.++.+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 44557888888888754321 121112 22457787777888888888888887764 3555432
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhc
Q 009255 431 -------YTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQ 495 (539)
Q Consensus 431 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 495 (539)
.+....+-.+...|++-.|.++|.+.+... ..++..|..++.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf------------------h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF------------------HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH------------------hcCcHHHHHHHHHHHHH
Confidence 334456667888999999999999999987 57778999999888753
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.97 E-value=3.1 Score=29.08 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
+.+-++.+....+-|++.+..+.+++|.+.+|+..|.++++....
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444444445566666666666666666666666666665553
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=2.7 Score=36.63 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=65.2
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 009255 38 KQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNK---SLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPD 114 (539)
Q Consensus 38 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 114 (539)
..|.+.+..+...++..-....+++.+...+-++.... ..|+. +-..+++.+. .-+.++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 34555555555556655556677777777766665431 11221 1122333332 3356677777777777788888
Q ss_pred hhhHHHHHHHHhccCCHhHHHHHHHHHHhC
Q 009255 115 VVTYNTLINRFFESGRSMEAFKLIDELDEH 144 (539)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 144 (539)
..+++.++..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877777666554
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.62 E-value=3.8 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 345 LQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILK 389 (539)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 389 (539)
.+-+..+.....-|++.+..+.+++|.+.+++.-|.++|+.+..+
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555555555555554443
No 343
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.42 E-value=2.7 Score=37.07 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=29.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 332 IHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWIL 388 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 388 (539)
..-|.+.|.+++|+..|...+... +-++.++..-..+|.+...+..|+.-...++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344555566666666665555442 11445555555555555555555554444443
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.41 E-value=24 Score=35.04 Aligned_cols=79 Identities=20% Similarity=0.164 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HhccCCHhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 009255 96 LEEAFRLRKEMESLKLLPDVVTYNTLINR-----FFESGRSMEAFKLIDELDE-------HGIKPNAVTHNIMIKWYCKE 163 (539)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 163 (539)
...+.+.++...+.| +......+..+ +....+.+.|+.+|+.+.+ .| .+....-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666554 22222222222 2234566667766666655 22 222333444444442
Q ss_pred C-----CHhHHHHHHHHHHHcC
Q 009255 164 G-----KIDKACKIVRNMEENG 180 (539)
Q Consensus 164 g-----~~~~a~~~~~~~~~~~ 180 (539)
. +.+.|..++....+.|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC
Confidence 2 3444555555555544
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.32 E-value=0.92 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..++..+...|++++|.+.++++++..
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56677788888888888888888888765
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.24 E-value=25 Score=34.96 Aligned_cols=178 Identities=16% Similarity=0.099 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HccCCHhHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 009255 26 LNEVRDLLSDMKKQGLVPNRTTYNILVSGY-----CKLGWLKEAMRVVDLMTQ-------NKSLPDVWTYNMLINGWCNA 93 (539)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 93 (539)
...|..+++.....| +......++.+| ....|.+.|..+|+.+.. .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456888888887776 333333333333 355688888888888766 43 233455566666653
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 009255 94 G-----MLEEAFRLRKEMESLKLLPDVVTYNTLINRFFE-SGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYC----KE 163 (539)
Q Consensus 94 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 163 (539)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|......|.. ..+..+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 5566888888877766 3333332222221111 23567788888887776543 22222222222 12
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 009255 164 GKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKG 215 (539)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 215 (539)
.+...|..++++..+.| .|...--...+..+.. +.++.+.-.+..+...|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35677777777777765 2222222222233333 55565555555555444
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.16 E-value=4.3 Score=28.39 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=17.3
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009255 348 HNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 387 (539)
+..+.....-|++.+..+.+++|.+.+++.-|.++|+.+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444333
No 348
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.05 E-value=0.41 Score=37.31 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 009255 366 LLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGR 445 (539)
Q Consensus 366 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 445 (539)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... + .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence 344455556666666666666655444455666666677766666566666555211 1 112345555666666
Q ss_pred HHHHHHHHHHH
Q 009255 446 LEEAQKFTSIM 456 (539)
Q Consensus 446 ~~~A~~~~~~~ 456 (539)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.92 E-value=4.9 Score=33.14 Aligned_cols=65 Identities=12% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
...+..+.+.+...+|+...+.-++.. |.+...-..+...|+-.|+|++|.--++-+-+ +
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak------------------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l 64 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK------------------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--L 64 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC------------------CccccchhHHHHHHhhcchHHHHHHHHHHHhh--c
Confidence 344566777888899998888888776 33444777888889999999999888877665 4
Q ss_pred CCCHH
Q 009255 514 AINKS 518 (539)
Q Consensus 514 ~p~~~ 518 (539)
.|+..
T Consensus 65 ~p~~t 69 (273)
T COG4455 65 SPQDT 69 (273)
T ss_pred Ccccc
Confidence 55544
No 350
>PRK10941 hypothetical protein; Provisional
Probab=88.78 E-value=5.9 Score=34.59 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGI 513 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 513 (539)
..+-.++.+.++++.|.++.+.++... |.++.-+.-.+-.|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~------------------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-- 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD------------------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-- 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--
Confidence 456677889999999999999999997 334447888899999999999999999999873
Q ss_pred CCCHHHHHHH
Q 009255 514 AINKSTYMNL 523 (539)
Q Consensus 514 ~p~~~~~~~~ 523 (539)
.|+.+....+
T Consensus 245 ~P~dp~a~~i 254 (269)
T PRK10941 245 CPEDPISEMI 254 (269)
T ss_pred CCCchhHHHH
Confidence 5555544433
No 351
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.74 E-value=3.9 Score=33.71 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChhhHHHHHHH
Q 009255 12 TYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSL--PDVWTYNMLING 89 (539)
Q Consensus 12 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~ 89 (539)
|.+..+..+.+.++.++++...+.=.+.. |.+......++..++-.|++++|..-++.+.+..+. +...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677777888888888877766654 556667777888888888888888777776654322 234455555543
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.41 E-value=1.1 Score=29.77 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
+....+.++|+..|+++++.... +|+-. ++..++.+|+..|++.++++.--+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~----------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITD----------------REDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCC----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778899999999999998743 33333 777889999999999999887544
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.16 E-value=31 Score=34.77 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=60.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCCCHHhHHHHHHHHHh---
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS-FKPDIVTCNILLSGLCR--- 372 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 372 (539)
..++.-.|+++.|++++-+ ......+..++...+..|.-.+-..... ..+.... -.|..--+..++..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 4455667888888888765 1122334444444433332211111111 2222211 01111345566666665
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChh-hH-HHHHHHHHccCChHHHH-----------HHHHH---HHhCCCC-CCH---hh
Q 009255 373 EGILEKALKFFRSWILKGKAVDSV-TY-NTLISSLCKERRLEDAF-----------GLLSE---MEEKKLG-PDR---YT 432 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~A~-----------~~~~~---~~~~~~~-~~~---~~ 432 (539)
..++.+|..++--+....- |+.. .+ ..+-......++++.-+ .++++ ++ ++. ++. .+
T Consensus 340 ~td~~~Al~Y~~li~~~~~-~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i 416 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKD-PEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREI 416 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-S-CCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHH
Confidence 4567777777755544311 1211 11 12222222233222211 12222 11 122 121 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMVE 458 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 458 (539)
....+.-+...|++++|+.+|..+-+
T Consensus 417 ~~~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 417 IEQAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 44556667788999999998876654
No 354
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.02 E-value=12 Score=31.54 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.+.....++...|++-++++....++... |++. +|..-+.+.+..=+..+|.+-|.++++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-------------------~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-------------------PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-------------------CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 34455567778899999999999999887 5555 898889999888899999999999987
Q ss_pred cCCCCCHH
Q 009255 511 KGIAINKS 518 (539)
Q Consensus 511 ~~~~p~~~ 518 (539)
+.|...
T Consensus 293 --ldpsla 298 (329)
T KOG0545|consen 293 --LDPSLA 298 (329)
T ss_pred --cChhhH
Confidence 456643
No 355
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.81 E-value=9.2 Score=33.57 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=60.0
Q ss_pred CCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 009255 323 PDETTFNTIIHGFCSEGQVEKALQFHNKMVEKS---FKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYN 399 (539)
Q Consensus 323 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 399 (539)
....+...++..-....+++.+...+-++.... ..|+...+ ..++.+. .-++++++.++..=+..|+-||..+++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 344455555555555667777777776665431 11121111 1222222 235667777777767777777888888
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEK 424 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~ 424 (539)
.++..+.+.+++.+|.++.-.|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888887777777666644
No 356
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.79 E-value=1.1 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
.|..++..+...|++++|...+++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 577889999999999999999999986
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.64 E-value=26 Score=33.30 Aligned_cols=164 Identities=12% Similarity=0.117 Sum_probs=75.9
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 009255 219 NTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIW 298 (539)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (539)
|...+..++..+.......-+..+..++...|- +...+..++.+|... ..+.-..+|+++.+..+. |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 444445555555555555555555555555432 344555555555555 444555555555555443 3333334444
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCC-C----HHhHHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHh
Q 009255 299 GLSQSGKTEQAIDMLNELLQSGMIP-D----ETTFNTIIHGFCSEGQVEKALQFHNKMVEK-SFKPDIVTCNILLSGLCR 372 (539)
Q Consensus 299 ~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 372 (539)
.|-+ ++.+.+..+|.++...-++. . ...|..+... -..+.+....+..++.+. |..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555555555554431110 0 0122222211 123445555554444432 222223333444445555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 009255 373 EGILEKALKFFRSWILK 389 (539)
Q Consensus 373 ~g~~~~A~~~~~~~~~~ 389 (539)
..++.+|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 56666666666655544
No 358
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.34 E-value=36 Score=34.55 Aligned_cols=107 Identities=11% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHH
Q 009255 412 EDAFGLLSEMEEKKLGPDRYTYAAIHTAL-VESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKI 489 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ 489 (539)
+.|...|.+.......+...+...++... ...++.+.++.++...+..+ .-+.. .|...+
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~------------------~~~iag~Wle~~ 504 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG------------------GGSIAGKWLEAI 504 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC------------------cchHHHHHHHHH
Confidence 44555555444332233333333444333 24567777777777776655 23444 566666
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCchhh
Q 009255 490 NEHCSQGRYKDALQIFEETRQKGIAINK-STYMNLMNGLIKRRKSISK 536 (539)
Q Consensus 490 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~ 536 (539)
+.-...|+...++.+++++...-..|+. .........+-+..+.++.
T Consensus 505 ~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~ 552 (881)
T KOG0128|consen 505 NLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLES 552 (881)
T ss_pred hHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHH
Confidence 6666677777777777777765455542 2333334445555555543
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.33 E-value=2 Score=35.85 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=62.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 009255 438 TALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAIN 516 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 516 (539)
+-|....+++.|+..|.+++..+ |+.. -|.+-+-++.+..+++.+..--.++++ +.||
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~n-------------------P~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N 76 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICIN-------------------PTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPN 76 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcC-------------------CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChH
Confidence 34556678899999999999887 7775 667788888888999999888888887 7888
Q ss_pred HHHHHHHHHHHHhcCCchhhcc
Q 009255 517 KSTYMNLMNGLIKRRKSISKAV 538 (539)
Q Consensus 517 ~~~~~~~l~~~~~~~~~~~~A~ 538 (539)
.+--...++.++-..+.+.+|+
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHH
Confidence 8877777776655555577664
No 360
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.24 E-value=3.1 Score=39.69 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=74.3
Q ss_pred HccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 406 CKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
...|+...|...+..+... .|- ......++....+.|-..+|-.++.+.+.... ..+.
T Consensus 618 r~~gn~~~a~~cl~~a~~~--~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~------------------sepl 677 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL--APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS------------------SEPL 677 (886)
T ss_pred eecCCcHHHHHHHHHHhcc--ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc------------------cCch
Confidence 4578999999999988743 443 34456788888899999999999999988772 4455
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTY 520 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 520 (539)
++..++++|....+.+.|++.|+.+++ ..|+....
T Consensus 678 ~~~~~g~~~l~l~~i~~a~~~~~~a~~--~~~~~~~~ 712 (886)
T KOG4507|consen 678 TFLSLGNAYLALKNISGALEAFRQALK--LTTKCPEC 712 (886)
T ss_pred HHHhcchhHHHHhhhHHHHHHHHHHHh--cCCCChhh
Confidence 888899999999999999999999997 46665544
No 361
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=86.95 E-value=38 Score=34.41 Aligned_cols=200 Identities=11% Similarity=0.017 Sum_probs=111.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---ccCCHhHHHHHHHHHHhCCCCCChhhHHH
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYC---KLGWLKEAMRVVDLMTQNKSLPDVWTYNM 85 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 85 (539)
+...+..||..+.+.|++++...--..|.+. .|.++..|..-+.... ..++..++..+|++...... ++..|.-
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e 188 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEE 188 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHH
Confidence 4556788999999999999888877777776 3667777766554443 45777888888888876532 4445555
Q ss_pred HHHHHHh-------cCChHHHHHHHHHHHhC-CCCCC--hhhHHH---HHHHHhccCCHhHHHHHHHHHHhCCCCCCHHH
Q 009255 86 LINGWCN-------AGMLEEAFRLRKEMESL-KLLPD--VVTYNT---LINRFFESGRSMEAFKLIDELDEHGIKPNAVT 152 (539)
Q Consensus 86 l~~~~~~-------~g~~~~a~~~~~~~~~~-~~~~~--~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 152 (539)
.+..+.. .++++....+|.+.... |...+ ...|.. +-..|..+-..++...++..-...+ .|..+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~ 266 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDT 266 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhh
Confidence 5544433 35677777788776643 21111 112222 2233444444456666666655543 23322
Q ss_pred HHHHHHHHHh-------cCCHhHHHHH-------HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 009255 153 HNIMIKWYCK-------EGKIDKACKI-------VRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRK 214 (539)
Q Consensus 153 ~~~l~~~~~~-------~g~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 214 (539)
-..-+.-..+ ..+++.+..- +++..+. .++-...|..++..+.+.|++-.....++++...
T Consensus 267 ~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 267 RGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred hHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 2211111111 1222333222 2222222 1233445667777777888877766666666543
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.95 E-value=20 Score=31.32 Aligned_cols=115 Identities=12% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhh-CCCCCCHHhHHHHHHHHhc-cCC-HHHHHHHHHHHhh-cCCccCHhhHHHHHHHHHccCCHHHHHH
Q 009255 201 MEEAFRMMDVMGR-KGLKMNTITLNTILHTLCC-EKK-LDEAYMLLNSASK-RGYYLDEVSYGTLITGYFRDEKANRALK 276 (539)
Q Consensus 201 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 276 (539)
+.+|+++|+.... ..+-.|..+...+++.... .+. ...-.++.+.+.. .+..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666653222 2244466666666666654 221 2222222333222 2344566667777777777777777777
Q ss_pred HHHHHHHc-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 009255 277 LWDEMKER-QIMPSTFTYNAMIWGLSQSGKTEQAIDMLNE 315 (539)
Q Consensus 277 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 315 (539)
++...... ++..|...|..++......|+..-..++..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77766554 4455777777778777777777666665554
No 363
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.07 E-value=19 Score=30.26 Aligned_cols=66 Identities=20% Similarity=0.094 Sum_probs=43.4
Q ss_pred hHHHHHHHHHccCChH-------HHHHHHHHHHhCCCCC----C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 397 TYNTLISSLCKERRLE-------DAFGLLSEMEEKKLGP----D-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 397 ~~~~l~~~~~~~~~~~-------~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
.+..+++.|...|+.+ .|.+.|.+..+..-.| + ......++....+.|++++|.++|.+++.....
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4555666676666633 4555566555442222 2 234445677888999999999999999987643
No 364
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.87 E-value=27 Score=31.74 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc---cCChHHHHHHH
Q 009255 342 EKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK---ERRLEDAFGLL 418 (539)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~ 418 (539)
+.-+.+++++++.+ +.+......++..+.+..+.+...+-|+++....+. +...|..++..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34445555555553 234555555566666666666666666666655222 44555555544332 12344444444
Q ss_pred HHHHhC------CC------CCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 419 SEMEEK------KL------GPD-----RYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 419 ~~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
.+.++. +. .++ ..++..+...+.++|-.+.|..+++.+++.+..
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 444321 11 111 123334445566889999999999999988754
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.76 E-value=0.42 Score=37.23 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
++..+.+.+.+.....+++.+...+...++..++.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556666677777777777776554555666777777777776666666655511 11222334555555555
Q ss_pred hHHHHHHHHH
Q 009255 96 LEEAFRLRKE 105 (539)
Q Consensus 96 ~~~a~~~~~~ 105 (539)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 366
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.03 E-value=36 Score=33.16 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=43.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 009255 371 CREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQ 450 (539)
Q Consensus 371 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 450 (539)
.+.|+++.|.++..+.. +..-|..|..+....+++..|.+.|.+..+. ..|+-.+...|+.+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHH
Confidence 45677777766655432 4556777777777777777777777766532 23444444555554444
Q ss_pred HHHHHHHHcC
Q 009255 451 KFTSIMVETG 460 (539)
Q Consensus 451 ~~~~~~~~~~ 460 (539)
.+-....+.+
T Consensus 713 ~la~~~~~~g 722 (794)
T KOG0276|consen 713 VLASLAKKQG 722 (794)
T ss_pred HHHHHHHhhc
Confidence 4444444443
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.44 E-value=5 Score=34.71 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009255 47 TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEME 107 (539)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (539)
++....+.|...|.+.+|.++.+...+.++ .+...+-.++..+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445556667777777777777777776643 356666677777777777666666555554
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.20 E-value=2.8 Score=24.44 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=13.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQ 39 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~ 39 (539)
+..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555556666666666555543
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.14 E-value=21 Score=34.58 Aligned_cols=150 Identities=19% Similarity=0.135 Sum_probs=78.4
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHH
Q 009255 57 KLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFK 136 (539)
Q Consensus 57 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 136 (539)
-.|+++.|..++..+.+ ...+.++..+.++|..++|+++ .+|..-- .....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence 45666666665544432 1234455555666666666543 1222111 222345666777666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 009255 137 LIDELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGL 216 (539)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 216 (539)
+..+.. +..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 655432 445567777777777777777777665443 33455555556665544444444444432
Q ss_pred CCCHHhHHHHHHHHhccCCHHHHHHHHHHH
Q 009255 217 KMNTITLNTILHTLCCEKKLDEAYMLLNSA 246 (539)
Q Consensus 217 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 246 (539)
. | ....++...|+++++.+++..-
T Consensus 724 ~-N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-N-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-c-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 1 2 2223444566666666655443
No 370
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.05 E-value=55 Score=33.70 Aligned_cols=223 Identities=12% Similarity=0.070 Sum_probs=118.0
Q ss_pred HHhcCCHhHHHHHHHHHHHcCCCCChh-------hHHHHH-HHHHhcCCHHHHHHHHHHHhhC----CCCCCHHhHHHHH
Q 009255 160 YCKEGKIDKACKIVRNMEENGFSPDCV-------TYNTLI-DANCKAGNMEEAFRMMDVMGRK----GLKMNTITLNTIL 227 (539)
Q Consensus 160 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 227 (539)
.....++++|..++.++...-..|+.. .++.+- ......|++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999988876542222221 222222 2234578899999888877654 1223444556667
Q ss_pred HHHhccCCHHHHHHHHHHHhhcCCccCHhhH---HHH--HHHHHccCCH--HHHHHHHHHHHHc----CCC--CCHhhHH
Q 009255 228 HTLCCEKKLDEAYMLLNSASKRGYYLDEVSY---GTL--ITGYFRDEKA--NRALKLWDEMKER----QIM--PSTFTYN 294 (539)
Q Consensus 228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~~--~~a~~~~~~~~~~----~~~--~~~~~~~ 294 (539)
.+..-.|+++.|..+.....+.....+...+ ..+ ...+..+|+. .+....|...... .+. +-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777889999999888877665322233322 222 1234456632 2333333333221 111 1123344
Q ss_pred HHHHHHHcCCCHHHHHHHHHH----HHHCCCCCCHHhH--HHHHHHHhcCCCHHHHHHHHHHHHhCCCCC----CHHhHH
Q 009255 295 AMIWGLSQSGKTEQAIDMLNE----LLQSGMIPDETTF--NTIIHGFCSEGQVEKALQFHNKMVEKSFKP----DIVTCN 364 (539)
Q Consensus 295 ~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 364 (539)
.+..++.+ .+.+..-... .......|-.... ..++......|+.++|...+.++......+ +.....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 3333222222 1222222222222 366777888999999999998887643222 222222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHH
Q 009255 365 ILLS--GLCREGILEKALKFFRS 385 (539)
Q Consensus 365 ~l~~--~~~~~g~~~~A~~~~~~ 385 (539)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 23356888887776655
No 371
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.54 E-value=28 Score=29.95 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----------CHhhHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHH
Q 009255 259 GTLITGYFRDEKANRALKLWDEMKERQIMP-----------STFTYNAMIWGLSQSGKTEQAIDMLNELLQSG-MIPDET 326 (539)
Q Consensus 259 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 326 (539)
..|...|...+.+.+..++++++....... -...|..-|..|..+.+-.+...++++...-. -.|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 345566666666666666666654321110 12345556667777766666666777654321 123332
Q ss_pred hHHHHHHHH-----hcCCCHHHHHHHHHH
Q 009255 327 TFNTIIHGF-----CSEGQVEKALQFHNK 350 (539)
Q Consensus 327 ~~~~l~~~~-----~~~~~~~~a~~~~~~ 350 (539)
. ..+++-| .+.|++++|..-|-+
T Consensus 229 I-mGvIRECGGKMHlreg~fe~AhTDFFE 256 (440)
T KOG1464|consen 229 I-MGVIRECGGKMHLREGEFEKAHTDFFE 256 (440)
T ss_pred H-HhHHHHcCCccccccchHHHHHhHHHH
Confidence 2 2334433 355777776543333
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=83.04 E-value=13 Score=26.31 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCC-----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPS-----SISYSEKINEHCSQGRYKDALQIFEETRQKGI- 513 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 513 (539)
..+.|++.+|.+.+.+..+...... .+. ..+...++......|++++|...++++++...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~--------------~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSN--------------NSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcc--------------cchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4567899999777777665432100 112 22556678888899999999999999886332
Q ss_pred CCCHHHHHHHHHHHH
Q 009255 514 AINKSTYMNLMNGLI 528 (539)
Q Consensus 514 ~p~~~~~~~~l~~~~ 528 (539)
.-|..+....+..+.
T Consensus 74 ~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 74 NGDRRCLAYALSWLA 88 (94)
T ss_pred HCCHHHHHHHHHHHH
Confidence 345555555555443
No 373
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=82.91 E-value=7.8 Score=27.10 Aligned_cols=49 Identities=10% Similarity=0.089 Sum_probs=34.0
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009255 480 PSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLI 528 (539)
Q Consensus 480 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~ 528 (539)
.+......++..+...|++++|++.+-++++.....+.......+-.++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 4445899999999999999999999999998654444444444444343
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.82 E-value=20 Score=31.04 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=46.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----
Q 009255 297 IWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR---- 372 (539)
Q Consensus 297 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 372 (539)
|++++..|++.+++...-+--+..-+..+.+...-|-.|.+.+++..+.++-...++..-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4566666666666655444333222223344444555566777777666666666654322233335555554443
Q ss_pred -cCCHHHHHHHH
Q 009255 373 -EGILEKALKFF 383 (539)
Q Consensus 373 -~g~~~~A~~~~ 383 (539)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47777776665
No 375
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.35 E-value=35 Score=31.46 Aligned_cols=92 Identities=14% Similarity=0.043 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC---------CCCCCH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILK--GKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK---------KLGPDR 430 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~ 430 (539)
.+..+..-|..+|+++.|.+.+-+..+- ...-....|..++.+-.-.|+|........++.+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4455555666666666666666654332 00111223444455555556666555555554432 122333
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 431 YTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 431 ~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
.++..++..+ .+++..|.+.+-.
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHh
Confidence 3444443333 3466666655543
No 376
>PRK09687 putative lyase; Provisional
Probab=82.11 E-value=36 Score=30.19 Aligned_cols=201 Identities=11% Similarity=0.013 Sum_probs=111.5
Q ss_pred CHhhHHHHHHHHHcCCCH----HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCH-----HHHHHHHHHHHhCCCCCC
Q 009255 289 STFTYNAMIWGLSQSGKT----EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQV-----EKALQFHNKMVEKSFKPD 359 (539)
Q Consensus 289 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~ 359 (539)
+...-...+.++.+.|+. .++...+..+... .++..+-...+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444455555555542 3455555555332 23444443444444333211 122333333322 235
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER-RLEDAFGLLSEMEEKKLGPDRYTYAAIHT 438 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 438 (539)
..+-...+.++.+.++ ++|...+-.+... ++...-...+.++...+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5666667777777776 4455555555542 34445555555555443 23466666666663 456666677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
++.+.|+ ..|...+-..++.+ + .....+.++...|.. +|+..+.++.+. .||..
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~--------------------~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~ 268 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG--------------------T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNE 268 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC--------------------c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChh
Confidence 7877777 56777666666543 1 234566777788885 688888888862 46766
Q ss_pred HHHHHHHHH
Q 009255 519 TYMNLMNGL 527 (539)
Q Consensus 519 ~~~~~l~~~ 527 (539)
+......+|
T Consensus 269 v~~~a~~a~ 277 (280)
T PRK09687 269 IITKAIDKL 277 (280)
T ss_pred HHHHHHHHH
Confidence 666555554
No 377
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.71 E-value=20 Score=27.70 Aligned_cols=97 Identities=9% Similarity=0.122 Sum_probs=65.2
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-hHHHHHHHH
Q 009255 33 LSDMKKQGLVPNRT--TYNILVSGYCKLGWLKEAMRVVDLMTQNKS-----LPDVWTYNMLINGWCNAGM-LEEAFRLRK 104 (539)
Q Consensus 33 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~ 104 (539)
...|.+.+..++.. ..++++.-....+++.....+++.+..... ..+...|..++....+... --.+..+|.
T Consensus 25 ~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~ 104 (145)
T PF13762_consen 25 LPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFN 104 (145)
T ss_pred HHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHH
Confidence 34445444444443 446777777777777777777776643211 2366788888888866655 445678888
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccC
Q 009255 105 EMESLKLLPDVVTYNTLINRFFESG 129 (539)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~ 129 (539)
-+.+.+.+.++.-|..++.++.+-.
T Consensus 105 ~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 105 FLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 8888777888888888888876653
No 378
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.85 E-value=9.7 Score=36.60 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=57.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 009255 372 REGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQK 451 (539)
Q Consensus 372 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 451 (539)
..|+...|.+.+..+....+.-.......|.....+.|-..+|-.++.+.+... ...+-++..+++++....+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777777777766554222233345556666667677777777777766543 3344566677777777777888888
Q ss_pred HHHHHHHcC
Q 009255 452 FTSIMVETG 460 (539)
Q Consensus 452 ~~~~~~~~~ 460 (539)
.++.+++..
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 888877765
No 379
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.58 E-value=4.4 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 432 TYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 432 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..++..+...|++++|...++..++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45566777777888888888888777654
No 380
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.27 E-value=50 Score=30.07 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHHHHHHHH
Q 009255 307 EQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCR---EGILEKALKFF 383 (539)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 383 (539)
+.-+.+++++++.++ .+.......+..+.+..+.+...+-++.++... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 455666777666633 355566667777777777777777777777653 2356666666665433 22455555555
Q ss_pred HHHHHc------CC------CCC-----hhhHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 009255 384 RSWILK------GK------AVD-----SVTYNTLISSLCKERRLEDAFGLLSEMEEKKL 426 (539)
Q Consensus 384 ~~~~~~------~~------~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 426 (539)
.+.+.. +. .++ ...+..+...+...|..+.|+.+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554432 11 001 01233344445678888889888888887754
No 381
>PRK09687 putative lyase; Provisional
Probab=79.15 E-value=46 Score=29.55 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHhcCC
Q 009255 149 NAVTHNIMIKWYCKEGK 165 (539)
Q Consensus 149 ~~~~~~~l~~~~~~~g~ 165 (539)
|+..-...+.++...|+
T Consensus 67 d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 67 NPIERDIGADILSQLGM 83 (280)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 33334444444444443
No 382
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.88 E-value=63 Score=33.75 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=15.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKE 283 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 283 (539)
|..|+..|...|++++|+++|.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55555556666666666666655544
No 383
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.63 E-value=20 Score=26.71 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 416 GLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+-+..+...++-|++.+....+++|.+-+|+..|.++++-+...-
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 334455555677888888888888888888888888887776554
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.48 E-value=57 Score=30.26 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 009255 298 WGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFC-SEGQVEKALQFHNKMV 352 (539)
Q Consensus 298 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 352 (539)
..+.+.|.+..|+++.+-+....+.-|+......|..|+ +.++++--+++.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 345556666666666666665544444444444454443 4555555555555443
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.09 E-value=14 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=32.5
Q ss_pred HccCChHHHHHHHHHHHhC---CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 406 CKERRLEDAFGLLSEMEEK---KLGPD-----RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 406 ~~~~~~~~A~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+.|++.+|.+.+.+..+. ...+. ......++......|++++|.+.++++++.-
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4556777766555554432 11111 2233445566777888888888888887654
No 386
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=45 Score=28.78 Aligned_cols=47 Identities=9% Similarity=0.091 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 413 DAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.-+++.+.|.... ..+-.++..--+++..-+.++.-.++...+++.+
T Consensus 131 rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 131 RELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred chHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344444444321 2233333333444444444555555555554444
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.74 E-value=12 Score=25.12 Aligned_cols=49 Identities=16% Similarity=0.126 Sum_probs=31.8
Q ss_pred ccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 407 KERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 407 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
..++.++|+..|+..++.-..|. -.++..++.+++..|++.+.+++--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888887776532222 23555677778888888777665443
No 388
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.44 E-value=87 Score=31.85 Aligned_cols=207 Identities=10% Similarity=0.036 Sum_probs=111.3
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHH
Q 009255 268 DEKANRALKLWDEMKERQIM-PS--TFTYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKA 344 (539)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 344 (539)
..+.+.|...+........- +. ..++..+.......+..+++...+....... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 45668888888876544321 11 1233444433333333556666666544322 2444455555566688899988
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH-HHHh
Q 009255 345 LQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLS-EMEE 423 (539)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~-~~~~ 423 (539)
...+..|.... .....-...+.+++...|+.++|...|+.+... ...|..|... +.|..-. ...-. ....
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~--~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ--RLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--HcCCCCC-CCCCCCCchh
Confidence 88888875532 234555666788877889999999999987431 1233333221 2222100 00000 0000
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 009255 424 KKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQ 503 (539)
Q Consensus 424 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 503 (539)
..+. .. -...-+..+...|+...|...+..+... .+......++..-.+.|.++.++.
T Consensus 403 ~~~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~--------------------~~~~~~~~la~~A~~~g~~~~ai~ 460 (644)
T PRK11619 403 SALT-QG-PEMARVRELMYWNMDNTARSEWANLVAS--------------------RSKTEQAQLARYAFNQQWWDLSVQ 460 (644)
T ss_pred hhhc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 0000 00 1122344566778888888888777764 233344555555566777777766
Q ss_pred HHHH
Q 009255 504 IFEE 507 (539)
Q Consensus 504 ~~~~ 507 (539)
...+
T Consensus 461 ~~~~ 464 (644)
T PRK11619 461 ATIA 464 (644)
T ss_pred HHhh
Confidence 5544
No 389
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.74 E-value=13 Score=22.79 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+..++-++.+.|++++|.+..+.+++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3456678899999999999999999987
No 390
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=18 Score=32.19 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh--hHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 009255 435 AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI--SYSEKINEHCSQGRYKDALQIFEETRQKG 512 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 512 (539)
.=++-|.+..++..|...|.+.++.... .|+.. .|++-+.+-.-.|++..|+.-..+++.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~----------------D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~-- 147 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCA----------------DPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK-- 147 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCC----------------CccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3444555555666666666665555433 33332 555555555555666555555555554
Q ss_pred CCCCHH
Q 009255 513 IAINKS 518 (539)
Q Consensus 513 ~~p~~~ 518 (539)
+.|+..
T Consensus 148 ~~P~h~ 153 (390)
T KOG0551|consen 148 LKPTHL 153 (390)
T ss_pred cCcchh
Confidence 445543
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.74 E-value=1e+02 Score=31.34 Aligned_cols=102 Identities=14% Similarity=0.069 Sum_probs=58.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009255 87 INGWCNAGMLEEAFRLRKEMESLKLLP---DVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKE 163 (539)
Q Consensus 87 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (539)
+..+.+.+.+++|+..-+..... .| -...+...+..+.-.|++++|-...-.|... +..-|......+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45566777788887776665442 23 2345666777777788888887777777654 555555555555555
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 009255 164 GKIDKACKIVRNMEENGFSPDCVTYNTLIDANCK 197 (539)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (539)
++...... -+.......+...|..++..+..
T Consensus 437 ~~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 55433222 12211111345566666666655
No 392
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.60 E-value=12 Score=31.02 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=32.0
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 009255 480 PSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAI 515 (539)
Q Consensus 480 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 515 (539)
|++..+..++.++...|+.++|.++.+++.. +.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 9999999999999999999999999999986 677
No 393
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.48 E-value=59 Score=28.42 Aligned_cols=57 Identities=7% Similarity=-0.023 Sum_probs=26.7
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 009255 52 VSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMES 108 (539)
Q Consensus 52 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 108 (539)
|.+++..+++.+++.+.-+--+..-+..+.+...-|-.|.+.|++..+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555554443333221122233444444455555655555555555444
No 394
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.22 E-value=6.2 Score=35.06 Aligned_cols=121 Identities=14% Similarity=0.052 Sum_probs=86.4
Q ss_pred HhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCChHH
Q 009255 335 FCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDS-VTYNTLISSLCKERRLED 413 (539)
Q Consensus 335 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ 413 (539)
....|.++.|++.+...+..+ ++....|..-..++.+.+.+..|++=+...... .||. ..|-.-..+....|+|.+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 456788999999999998875 456777777788888999999999988887775 3333 345555556677899999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 414 AFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 414 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
|...+....+.++.+....+ +-.+.-..+..++-...+++..+..
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHh
Confidence 99999999987765554433 3334445555666666666665554
No 395
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=74.03 E-value=1e+02 Score=30.94 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=0.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 494 SQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
+.|++.+|.+.+-.+++.++.|..-
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp -------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 4577888877777777655556543
No 396
>PRK10941 hypothetical protein; Provisional
Probab=73.97 E-value=50 Score=29.04 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=32.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.+-.+|.+.++++.|+.+.+.+... .|+ ..-+.--+-.|.+.|.+..|..-++..++..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 3444555666666666666666543 233 3333344445566666666666666666554
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=72.83 E-value=39 Score=25.69 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=43.1
Q ss_pred CChhhHHHHHHHHHccC---ChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 393 VDSVTYNTLISSLCKER---RLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 393 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
++..+-..+.+++.+.. +..+.+.++++..+.. .|+ ......|+-++.+.++++.++++...+++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 44455556666666654 3455667777777522 332 3445556667888888888888888888775
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.73 E-value=71 Score=29.94 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=39.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--ccCCHhHHHHHHHHHHhC
Q 009255 17 LDALFKKGKLNEVRDLLSDMKKQGLVPNRT--TYNILVSGYC--KLGWLKEAMRVVDLMTQN 74 (539)
Q Consensus 17 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 74 (539)
+..+...++|..|.++|+.+..+ ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788888888888888887 555554 4445555554 566777888888877654
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.52 E-value=46 Score=31.12 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIV--TCNILLSGLC--REGILEKALKFFRSWILK 389 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 389 (539)
.....+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445778888888888888775 444443 3444444443 456777888888776654
No 400
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.49 E-value=29 Score=25.89 Aligned_cols=38 Identities=8% Similarity=0.260 Sum_probs=20.2
Q ss_pred HHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 009255 316 LLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVE 353 (539)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 353 (539)
+....+.|++......+++|.+.+|+..|.++|+-+..
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33344455555555555555555555555555555543
No 401
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.45 E-value=2.1e+02 Score=33.78 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=45.2
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 430 RYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 430 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..+|...++.....|.++.|...+-.+.+.. -+..+.-.+..++..|+...|+.++++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--------------------LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------------------cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4677777788888888888887777766653 22355556777888888888888888877
Q ss_pred Hc
Q 009255 510 QK 511 (539)
Q Consensus 510 ~~ 511 (539)
+.
T Consensus 1730 ~~ 1731 (2382)
T KOG0890|consen 1730 SK 1731 (2382)
T ss_pred Hh
Confidence 54
No 402
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.86 E-value=37 Score=30.39 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=53.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHH
Q 009255 362 TCNILLSGLCREGILEKALKFFRSWILKG---KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIH 437 (539)
Q Consensus 362 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 437 (539)
.|..=.+-|.+..++..|...|.+-++.. ...+...|+.-..+....|++..|+.=....+.. .|+ ...+..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 44444555666666666666666655441 1223345555555555666666666655555532 344 23444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 009255 438 TALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
.++....++++|..+.+..+..+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Confidence 55666666666666666655443
No 403
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=69.32 E-value=59 Score=28.80 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.3
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc----------cCChHHH
Q 009255 345 LQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCK----------ERRLEDA 414 (539)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~A 414 (539)
.++|+.+.+.++.|.-.++..+.-.+.+.=.+.+.+.+|+.+.. |+.-|..|+..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 46777777888888888888888888888888888888888876 33335556655543 4777766
Q ss_pred HHHHHH
Q 009255 415 FGLLSE 420 (539)
Q Consensus 415 ~~~~~~ 420 (539)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 666653
No 404
>PRK12798 chemotaxis protein; Reviewed
Probab=68.73 E-value=1e+02 Score=28.83 Aligned_cols=203 Identities=12% Similarity=0.104 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-hcCCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHH
Q 009255 303 SGKTEQAIDMLNELLQSGMIPDETTFNTIIHGF-CSEGQVEKALQFHNKMVEKSFKPD----IVTCNILLSGLCREGILE 377 (539)
Q Consensus 303 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 377 (539)
.|+..++.+.+..+.....++....+..|+.+- ....+..+|+.+|+...-. .|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 456666666666555444444444444444432 2344566666666665432 111 112222333445566666
Q ss_pred HHHHHHHHHHHcCC-CCChh-hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHH
Q 009255 378 KALKFFRSWILKGK-AVDSV-TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPD--RYTYAAIHTALVESGRLEEAQKFT 453 (539)
Q Consensus 378 ~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 453 (539)
++..+-.+....-. .|-.. .+..+..+..+.++-..- ..+..+... +.|+ ...|..+.+.-...|+.+-|...-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 65555444443310 11111 112222233333221111 223333332 2333 356777777777788888888888
Q ss_pred HHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 454 SIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
+++....... ..+.......-+-+-.-..+.++|++.+..+....+.|.+-.....
T Consensus 281 ~~A~~L~~~~--------------~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~A 336 (421)
T PRK12798 281 ERALKLADPD--------------SADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDRALLEA 336 (421)
T ss_pred HHHHHhccCC--------------CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhHHHHHH
Confidence 7777664210 0011111111122233446688888888877766666666544433
No 405
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=1.6e+02 Score=31.01 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=25.3
Q ss_pred HHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009255 124 RFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCK 162 (539)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (539)
.|......+-++.+++.+....-.++...++.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 355666677777777777665555566666666666654
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.27 E-value=41 Score=23.99 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.5
Q ss_pred hccCCHhHHHHHH
Q 009255 126 FESGRSMEAFKLI 138 (539)
Q Consensus 126 ~~~~~~~~a~~~~ 138 (539)
...|++++|..+.
T Consensus 50 mNrG~Yq~Al~l~ 62 (115)
T TIGR02508 50 MNRGDYQSALQLG 62 (115)
T ss_pred HccchHHHHHHhc
Confidence 3344444444443
No 407
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.24 E-value=40 Score=23.86 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMNG 526 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 526 (539)
....|+-.|.+.|+.+.|.+-|+.-.. +-|.+.+++.+|..
T Consensus 74 ~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFLmk 114 (121)
T COG4259 74 YHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFLMK 114 (121)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHHHH
Confidence 455677789999999999999998664 78999999887754
No 408
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=68.21 E-value=38 Score=23.68 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=22.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 427 GPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 427 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.|......++..+...|++++|.+.+-.+++.+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3445666677777777788888877777777765
No 409
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=68.07 E-value=49 Score=28.79 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=59.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 009255 436 IHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAI 515 (539)
Q Consensus 436 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 515 (539)
+-.++.+.++++.|....+..+..+ |-++..+.--+.+|.+.|-+..|++.++...+ ..|
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~------------------P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~--~~P 246 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLN------------------PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE--HCP 246 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhC------------------CCChhhccCcHHHHHhcCCchhhHHHHHHHHH--hCC
Confidence 4456788999999999999999997 34444777888899999999999999999776 468
Q ss_pred CHHHHHHHHHHHHh
Q 009255 516 NKSTYMNLMNGLIK 529 (539)
Q Consensus 516 ~~~~~~~~l~~~~~ 529 (539)
+..+...+-..+.+
T Consensus 247 ~~~~a~~ir~~l~~ 260 (269)
T COG2912 247 DDPIAEMIRAQLLE 260 (269)
T ss_pred CchHHHHHHHHHHH
Confidence 87766655554443
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.89 E-value=17 Score=30.49 Aligned_cols=65 Identities=18% Similarity=0.175 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 439 ALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 439 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
...+.|+.+.+.+++.++++.- +.....|..++..-.++|+.+.|.+.|++.++ +.|+..
T Consensus 4 ~~~~~~D~~aaaely~qal~la------------------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA------------------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC------------------chhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCcccc
Confidence 3557889999999999999876 33445999999999999999999999999997 566655
Q ss_pred HHHHH
Q 009255 519 TYMNL 523 (539)
Q Consensus 519 ~~~~~ 523 (539)
.-..+
T Consensus 64 ~gaa~ 68 (287)
T COG4976 64 GGAAL 68 (287)
T ss_pred cchhh
Confidence 44333
No 411
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.58 E-value=51 Score=24.90 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 413 DAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 413 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
.+.++|+.|...|+... ...|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77778888877766444 455666777777888888888887764
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.33 E-value=87 Score=27.45 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=44.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHH-H
Q 009255 357 KPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYA-A 435 (539)
Q Consensus 357 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ 435 (539)
..++.....+...|.+.|++.+|+..|-... .|+...+..++......|. +.+...|. .
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~----------------~~e~dlfi~R 146 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGY----------------PSEADLFIAR 146 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTS----------------S--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcC----------------CcchhHHHHH
Confidence 3477788889999999999998887764321 1122222222322222222 22222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 436 IHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 436 l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.+--|...++...|...+....+.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 223355578899999888877765
No 413
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=58 Score=29.25 Aligned_cols=84 Identities=15% Similarity=0.269 Sum_probs=50.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhH--HHHHHHHhhcCCHHHHHHHHHHHHH-----
Q 009255 438 TALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISY--SEKINEHCSQGRYKDALQIFEETRQ----- 510 (539)
Q Consensus 438 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~----- 510 (539)
.+..+.++.++|.++++++.+.-... ..|+...| ...++++...|+.+++.+.+++..+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~--------------~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~ 148 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEY--------------KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSL 148 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhh--------------ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcc
Confidence 34455567888888888776543220 02555533 3556667777888888887777655
Q ss_pred cCCCCCHH-HHHHHHHHHHhcCCchh
Q 009255 511 KGIAINKS-TYMNLMNGLIKRRKSIS 535 (539)
Q Consensus 511 ~~~~p~~~-~~~~~l~~~~~~~~~~~ 535 (539)
.++.|+.. .|..+-+.|++.-++++
T Consensus 149 ~~v~~~Vh~~fY~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 149 DGVTSNVHSSFYSLSSQYYKKIGDFA 174 (380)
T ss_pred cCCChhhhhhHHHHHHHHHHHHHhHH
Confidence 45556443 44445556666655554
No 414
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.60 E-value=32 Score=28.40 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 426 LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 426 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..|+..++..++.++...|+.++|.++.+++....
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 36788888888888888888888888888887776
No 415
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.71 E-value=18 Score=23.12 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 009255 44 NRTTYNILVSGYCKLGWLKEAMRVVDLMT 72 (539)
Q Consensus 44 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 72 (539)
|-.-...++.++...|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344455555556666666655555554
No 416
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=65.66 E-value=14 Score=20.38 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=18.9
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFE 506 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~ 506 (539)
.|..++..+...|++++|+.+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46778889999999999999955
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.78 E-value=20 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=23.8
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 481 SSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 481 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
|......++.+|...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334556778899999999999999999875
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.06 E-value=17 Score=24.27 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=13.5
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|++++|+++|...++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 46888888888887765
No 419
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.64 E-value=1.4e+02 Score=28.56 Aligned_cols=426 Identities=13% Similarity=0.028 Sum_probs=211.1
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHHhCCCCCC--HHHHHHHHHH-HHccCCHhHHHHHHHHHHhC-CCCCC-----hhhHH
Q 009255 16 ILDALFKKG--KLNEVRDLLSDMKKQGLVPN--RTTYNILVSG-YCKLGWLKEAMRVVDLMTQN-KSLPD-----VWTYN 84 (539)
Q Consensus 16 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~-~~~~~-----~~~~~ 84 (539)
+...+...| +...+++.++......++-- ..+...++.. +....+++.|...++..-.. ..-|+ -.+++
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 445666667 77788888888877643322 2233344433 34678889998888765422 11122 34566
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCChhhH-----HHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009255 85 MLINGWCNAG-MLEEAFRLRKEMESLKLLPDVVTY-----NTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIK 158 (539)
Q Consensus 85 ~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (539)
.|...+.... .+..+..++++..+.. .+...| ..|++.+.-..++..|.+++.---+. -.+-...|..++.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~f 169 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHH
Confidence 6777777665 7788888888876642 222233 34566777778888888874322111 1111222222211
Q ss_pred ------HHHhcCC---HhHHHHHHHHHHHcCCCCChhh------H--HHHHHHHHhcCCHHHHHHHHHHHhhC---CCCC
Q 009255 159 ------WYCKEGK---IDKACKIVRNMEENGFSPDCVT------Y--NTLIDANCKAGNMEEAFRMMDVMGRK---GLKM 218 (539)
Q Consensus 159 ------~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 218 (539)
...-..+ ++.+......+.+. ..+|..- | +.-+..|...|+...+...++++... +.++
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Confidence 1122223 33444444444443 3344322 1 11123344556666666655555432 2222
Q ss_pred CHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHH-------HHcCCCCCHh
Q 009255 219 NTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEM-------KERQIMPSTF 291 (539)
Q Consensus 219 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~ 291 (539)
+...-..+ + -... ..++..+.+..+ ...+|..-...-...|-+++|.++-+++ ..... ...
T Consensus 249 ~~~h~e~i---l-gsps----~~l~~wlpkeqi--caLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~--~sr 316 (629)
T KOG2300|consen 249 SRGHDEKI---L-GSPS----PILFEWLPKEQI--CALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADL--MSR 316 (629)
T ss_pred CCCccccc---c-CCCC----hHHHhhccHhhh--HhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccc--hhH
Confidence 10000000 0 0000 001111111000 0011110001011123334444433333 32210 222
Q ss_pred hHHH--------HHHHHHcCCCHHHHHHHHHHHHHCC-CCCCH--------HhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 009255 292 TYNA--------MIWGLSQSGKTEQAIDMLNELLQSG-MIPDE--------TTFNTIIHGFCSEGQVEKALQFHNKMVEK 354 (539)
Q Consensus 292 ~~~~--------l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (539)
.++. ++-+-.-.|++.+|++-+.+|.+.- ..|.+ ..-..+...|...+.++.|..-|....+.
T Consensus 317 ilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~ 396 (629)
T KOG2300|consen 317 ILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL 396 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh
Confidence 2221 1222245799999999988887541 12221 11222334456778999999988887765
Q ss_pred CCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH----------HHHHHHHHccCChHHHHHHHHHHH
Q 009255 355 SFKPDIVTC--NILLSGLCREGILEKALKFFRSWILKGKAVDSVTY----------NTLISSLCKERRLEDAFGLLSEME 422 (539)
Q Consensus 355 ~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~A~~~~~~~~ 422 (539)
--..|...+ ..++-.|.+.|+-+.-.++++.+-.. +..++ ...+......+++.+|..++.+-.
T Consensus 397 t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~----nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 397 TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPL----NTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCC----CCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333333332 34566788888877776666655322 22221 112222346899999999999877
Q ss_pred hCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 009255 423 EKKLGPD-----RYTYAAIHTALVESGRLEEAQKFTSIMVETGK 461 (539)
Q Consensus 423 ~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 461 (539)
+..-..| .-.+..+.......|+..++.+...-.++...
T Consensus 473 kmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 473 KMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 5421111 22233455566778999999888877766543
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.96 E-value=8.6 Score=28.94 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=17.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009255 22 KKGKLNEVRDLLSDMKKQGLVPNRTTYNILVS 53 (539)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 53 (539)
..|.-.+|..+|+.|+..|.|||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345555666666666666665554 444443
No 421
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.74 E-value=54 Score=25.54 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 009255 31 DLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAG 94 (539)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 94 (539)
.+.+.+.+.|+.+++. ...++..+...++.-.|.++++.+.+.++..+..|....+..+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445555666655443 34566666666666777777777777766655555444455555444
No 422
>PF13934 ELYS: Nuclear pore complex assembly
Probab=62.69 E-value=98 Score=26.42 Aligned_cols=21 Identities=10% Similarity=0.379 Sum_probs=11.6
Q ss_pred HHHHHhccCCHhHHHHHHHHH
Q 009255 121 LINRFFESGRSMEAFKLIDEL 141 (539)
Q Consensus 121 l~~~~~~~~~~~~a~~~~~~~ 141 (539)
++.++...|+.+.|+.+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 445555556666666655553
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.68 E-value=49 Score=22.91 Aligned_cols=65 Identities=17% Similarity=0.160 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 009255 29 VRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEA 99 (539)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 99 (539)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. +|+ ..|..++.++...|.-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~----~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE----GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC----cHHHHHHHHHHHcCchhhh
Confidence 45666777776643 33344444333335577777777777777 432 3566677776666654443
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.66 E-value=31 Score=20.61 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=17.8
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009255 21 FKKGKLNEVRDLLSDMKKQGLVPNRTTYNILV 52 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 52 (539)
-+.|-..++..++++|.+.|+..++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666555555555555444
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.50 E-value=65 Score=24.34 Aligned_cols=82 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh
Q 009255 409 RRLEDAFGLLSEMEEK-----KLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI 483 (539)
Q Consensus 409 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (539)
+....-..++++.... ....|.. |..+--.|.+.- +++.++|..+...+.. .....
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~~~--~~~~~if~~l~~~~IG----------------~~~A~ 100 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYADLS--SDPREIFKFLYSKGIG----------------TKLAL 100 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHTTB--SHHHHHHHHHHHHTTS----------------TTBHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHHHc--cCHHHHHHHHHHcCcc----------------HHHHH
Confidence 3444555566655543 1223333 333333444333 3999999999998855 34444
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
.|...+..+...|++++|.++|+..+
T Consensus 101 fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 101 FYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 88999999999999999999998753
No 426
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.99 E-value=17 Score=33.84 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHH
Q 009255 434 AAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETR 509 (539)
Q Consensus 434 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 509 (539)
..+++.++-.||+..|+++++.+--.. .....++++-.. ++..+|-+|...+++.+|.++|..++
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~-----------~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNK-----------KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCccc-----------chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888777765442111 012233344443 88999999999999999999999865
No 427
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.91 E-value=1e+02 Score=26.33 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHHHHHH--ccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 009255 48 YNILVSGYC--KLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRF 125 (539)
Q Consensus 48 ~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (539)
+...+.+++ ..+++++|.+.+-.- ......-..++..+...|+.+.|+.+++.+.-. ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 445555555 566777777766322 111222345778888889999999888886432 1122223333333
Q ss_pred hccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009255 126 FESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYC 161 (539)
Q Consensus 126 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (539)
..++.+.+|..+-+...+.. ....+..++..+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 66788888888877765531 1345555555555
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.80 E-value=86 Score=25.47 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=10.6
Q ss_pred HHHhccCCHhHHHHHHHHHHh
Q 009255 123 NRFFESGRSMEAFKLIDELDE 143 (539)
Q Consensus 123 ~~~~~~~~~~~a~~~~~~~~~ 143 (539)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 344555555555555555444
No 429
>PRK12798 chemotaxis protein; Reviewed
Probab=61.71 E-value=1.4e+02 Score=27.97 Aligned_cols=230 Identities=14% Similarity=0.054 Sum_probs=120.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHH-HHccC
Q 009255 192 IDANCKAGNMEEAFRMMDVMGRKGLKMNTI-TLNTILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITG-YFRDE 269 (539)
Q Consensus 192 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 269 (539)
+-....-|+++-...++. .+..++.. .+...+..| -.|+..++.+.+..+.....++....+-.|+.+ .....
T Consensus 88 ~iy~lSGGnP~vlr~L~~----~d~~~~~d~~L~~g~laY-~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 88 LIYLLSGGNPATLRKLLA----RDKLGNFDQRLADGALAY-LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred HhhHhcCCCHHHHHHHHH----cCCCChhhHHHHHHHHHH-HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhccc
Confidence 333345566654444443 33332222 222223333 468888888888887777666666666666654 34566
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHH-hHHHHHHHHhcCCCHHH
Q 009255 270 KANRALKLWDEMKERQIMPST----FTYNAMIWGLSQSGKTEQAIDMLNELLQS-GMIPDET-TFNTIIHGFCSEGQVEK 343 (539)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~ 343 (539)
+...|+++|+...-. .|-. .....-+....+.|+.++...+-.+-.+. ...|-.. .+..+..+..+.++-..
T Consensus 163 dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~ 240 (421)
T PRK12798 163 DPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR 240 (421)
T ss_pred CHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc
Confidence 788888888887643 2322 23334445567788888776665554432 1122222 22223333344333222
Q ss_pred HHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH-----HHccCChHHHHHH
Q 009255 344 ALQFHNKMVEK-SFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISS-----LCKERRLEDAFGL 417 (539)
Q Consensus 344 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~ 417 (539)
-.. +..++.. ....-..+|..+.+.-.-.|+.+-|.-.-++........+.. ...+.. -.-..+++++...
T Consensus 241 ~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~--~~ra~LY~aaa~v~s~~~~~al~~ 317 (421)
T PRK12798 241 DAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSAD--AARARLYRGAALVASDDAESALEE 317 (421)
T ss_pred HHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcc--hHHHHHHHHHHccCcccHHHHHHH
Confidence 222 3333322 112234577777777777888888887777776653211111 111111 1234567777777
Q ss_pred HHHHHhCCCCCCHh
Q 009255 418 LSEMEEKKLGPDRY 431 (539)
Q Consensus 418 ~~~~~~~~~~~~~~ 431 (539)
+.++....+.|...
T Consensus 318 L~~I~~~~L~~~Dr 331 (421)
T PRK12798 318 LSQIDRDKLSERDR 331 (421)
T ss_pred HhcCChhhCChhhH
Confidence 77766655555443
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.70 E-value=1.2e+02 Score=27.18 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=33.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 009255 400 TLISSLCKERRLEDAFGLLSEMEEKKLGPD---RYTYAAIHTALVESGRLEEAQKFTSIMVET 459 (539)
Q Consensus 400 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 459 (539)
.|..+..+.|+..+|.+.++.+.+. .|- ..+...++.+|....-+.+...++.+.-+.
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4445555677777777777776643 221 123345666666666666666655554433
No 431
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.59 E-value=21 Score=18.37 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009255 444 GRLEEAQKFTSIMVETG 460 (539)
Q Consensus 444 g~~~~A~~~~~~~~~~~ 460 (539)
|+.+.+..+|++++...
T Consensus 1 ~~~~~~r~i~e~~l~~~ 17 (33)
T smart00386 1 GDIERARKIYERALEKF 17 (33)
T ss_pred CcHHHHHHHHHHHHHHC
Confidence 57889999999999886
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.54 E-value=1.1e+02 Score=26.33 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhC---CCCCCHhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHcC
Q 009255 412 EDAFGLLSEMEEK---KLGPDRYTYAAIHT-----ALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 412 ~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+.|.+.|+++.+. .++|..++...++- .|-..|+.++|.++.+.+....
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a 199 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEA 199 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 4455555554422 25677666554442 2346899999999888876643
No 433
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.82 E-value=64 Score=23.38 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 009255 25 KLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRK 104 (539)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 104 (539)
..++|..+.+.+...+. ....+-..-+..+.++|+|++| +..-. ....||...|-+|-. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45556666665555542 1222222333344556666665 11111 112344444433322 34555555555555
Q ss_pred HHHhC
Q 009255 105 EMESL 109 (539)
Q Consensus 105 ~~~~~ 109 (539)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55443
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.10 E-value=72 Score=24.85 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 009255 140 ELDEHGIKPNAVTHNIMIKWYCKEGKIDKACKIVRNMEENGFSP 183 (539)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 183 (539)
.+.+.|+++++. ...++..+...++.-.|.++++.+.+.+...
T Consensus 11 ~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i 53 (145)
T COG0735 11 RLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI 53 (145)
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC
Confidence 334444443332 2234444444444455555555555544333
No 435
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=59.10 E-value=27 Score=18.74 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHH
Q 009255 445 RLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKIN 490 (539)
Q Consensus 445 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 490 (539)
.++.|..+|++.+... |++.+|...+.
T Consensus 2 E~dRAR~IyeR~v~~h-------------------p~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVH-------------------PEVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhC-------------------CCchHHHHHHH
Confidence 4789999999999875 88888876654
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.74 E-value=2.2e+02 Score=29.14 Aligned_cols=338 Identities=10% Similarity=0.022 Sum_probs=172.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009255 84 NMLINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKE 163 (539)
Q Consensus 84 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (539)
...+..+.+.+++...+.++.. .+.+...-.....+....|+.++|......+-..|.. .+..+..++..+.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHc
Confidence 3344455667777766653211 1345555566777788889888887777776554433 566677788777766
Q ss_pred CCHhHH--HHHHHHHHHcCCCCChhhHHHHHHHHH------------hcCCHHHHHHHHHHHhhCCCCCCH---HhHHHH
Q 009255 164 GKIDKA--CKIVRNMEENGFSPDCVTYNTLIDANC------------KAGNMEEAFRMMDVMGRKGLKMNT---ITLNTI 226 (539)
Q Consensus 164 g~~~~a--~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 226 (539)
|.+... .+=+..+...| +...-..+..... -..+...+...+.. ++++. ......
T Consensus 177 g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~ 248 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVA 248 (644)
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHH
Confidence 654432 22222223222 2222222222110 01112222221111 11222 111222
Q ss_pred HHHHhccCCHHHHHHHHHHHhhcC-CccCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcC
Q 009255 227 LHTLCCEKKLDEAYMLLNSASKRG-YYLDE--VSYGTLITGYFRDEKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQS 303 (539)
Q Consensus 227 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (539)
+.-+ ...+.+.|..++....... ..+.. .....+.......+...++...+....... .+......-+......
T Consensus 249 l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~ 325 (644)
T PRK11619 249 FASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGT 325 (644)
T ss_pred HHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHc
Confidence 2222 3456688888888765443 22111 223334333333333556666666544332 2444455555566688
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHH-HH-
Q 009255 304 GKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKA-LK- 381 (539)
Q Consensus 304 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~- 381 (539)
++++.+...+..|..... ....-..-+..+....|+.++|...|+.+... . +|..++.+ .+.|..-.- ..
T Consensus 326 ~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~---~fYG~LAa-~~Lg~~~~~~~~~ 397 (644)
T PRK11619 326 GDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---R---GFYPMVAA-QRLGEEYPLKIDK 397 (644)
T ss_pred cCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---CcHHHHHH-HHcCCCCCCCCCC
Confidence 999999888888755322 24445556778877799999999999998532 1 23222211 222321000 00
Q ss_pred --HHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 382 --FFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSI 455 (539)
Q Consensus 382 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 455 (539)
.-.. . +. .. .-..-+..+...|....|...+..+... .+......+.....+.|.++.++.....
T Consensus 398 ~~~~~~--~--~~-~~-~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 398 APKPDS--A--LT-QG-PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCchhh--h--hc-cC-hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0000 0 00 00 1122334556678888888888777753 2334445555556667777777665543
No 437
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=57.26 E-value=1.5e+02 Score=26.83 Aligned_cols=128 Identities=11% Similarity=0.147 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc------cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISSLCK------ERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLE 447 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 447 (539)
+-++++..++++....+. |.+......+.++.. .-+|.....+|+-+... .|++.+-.+-.-+.....-.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHH
Confidence 345677777877777654 566666666655432 34677777777777754 455433222222344444467
Q ss_pred HHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 448 EAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 448 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
.+....+-+...+.. .... .+..-++.+.+.|+.++|...|++.+. +.++...-..+
T Consensus 347 agLa~ve~L~~~~~L-----------------~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~aer~~l 404 (415)
T COG4941 347 AGLAMVEALLARPRL-----------------DGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAAERAFL 404 (415)
T ss_pred hHHHHHHHhhccccc-----------------ccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChHHHHHH
Confidence 778888777766422 2222 455668888899999999999999997 55665544333
No 438
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.95 E-value=1.8e+02 Score=27.64 Aligned_cols=76 Identities=20% Similarity=0.204 Sum_probs=33.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCh
Q 009255 21 FKKGKLNEVRDLLSDMKKQGLVPNRTT--YNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVW--TYNMLINGWCNAGML 96 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 96 (539)
.+.|+.+-+..++ +.|..++... -.+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4556665444443 4454444322 2233444455666543 33344444433321 112233444566776
Q ss_pred HHHHHHHH
Q 009255 97 EEAFRLRK 104 (539)
Q Consensus 97 ~~a~~~~~ 104 (539)
+.+..+++
T Consensus 82 ~~v~~Ll~ 89 (413)
T PHA02875 82 KAVEELLD 89 (413)
T ss_pred HHHHHHHH
Confidence 65544443
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.54 E-value=74 Score=23.08 Aligned_cols=29 Identities=7% Similarity=-0.033 Sum_probs=16.0
Q ss_pred CChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 480 PSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 480 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
||...|..| +-.+.|-.+++...+.++-.
T Consensus 69 pdL~p~~AL--~a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 69 PDLEPWAAL--CAWKLGLASALESRLTRLAS 97 (116)
T ss_dssp GGGHHHHHH--HHHHCT-HHHHHHHHHHHCT
T ss_pred ccHHHHHHH--HHHhhccHHHHHHHHHHHHh
Confidence 555555544 34466666666666666543
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.15 E-value=12 Score=28.19 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLMN 525 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~ 525 (539)
+|.+=-..+...|.-..|-++|++|++.|-.||+ |..++.
T Consensus 97 aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 97 AWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred EEeCCCcchhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 5544444666778889999999999999999985 444444
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=55.88 E-value=45 Score=31.52 Aligned_cols=106 Identities=11% Similarity=-0.003 Sum_probs=69.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccC
Q 009255 331 IIHGFCSEGQVEKALQFHNKMVEKSFKPDIVT-CNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKER 409 (539)
Q Consensus 331 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 409 (539)
-+......++++.|..++.++++. .|+... +..-..++.+.+++..|+.=+..+++..+. ....|..=+.++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence 345566778899999999999886 444443 333346778888888888887777776311 2224444455666667
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 410 RLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 410 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
.+.+|+..|+.... +.|+..-+...+.-|-
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 77777777777663 5777766666655553
No 442
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=55.63 E-value=2.2e+02 Score=31.16 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=100.8
Q ss_pred HHHHhcCCCHHHHHH------HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-------HcCCCCChhhH
Q 009255 332 IHGFCSEGQVEKALQ------FHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWI-------LKGKAVDSVTY 398 (539)
Q Consensus 332 ~~~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~ 398 (539)
.+.+...|.+..+.+ ++......-.++....|..+...+-+.|+.++|...-.... ..+..-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344555666666666 55543333234567788888889999999999988755432 12222234456
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCC
Q 009255 399 NTLISSLCKERRLEDAFGLLSEMEEK-----K--LGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNT 471 (539)
Q Consensus 399 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 471 (539)
..+...+...+....|...+.+.... | .+|...++..+...+...++++.|.++.+.+...... +.+
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~---v~g--- 1092 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKK---VLG--- 1092 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhh---hcC---
Confidence 66666666667778888887776643 1 2333444455555555668899999999998874311 000
Q ss_pred CCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 009255 472 SKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEE 507 (539)
Q Consensus 472 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 507 (539)
.+.-+....+..+++.+...|+...|+...+.
T Consensus 1093 ----~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1093 ----PKELETALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred ----ccchhhhhHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00012223667777777777777776655543
No 443
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=55.04 E-value=1.5e+02 Score=27.78 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=38.2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 009255 47 TYNILVSGYCKLGWLKEAMRVVDLMTQN--KSLPDVWTYNMLINGWCNAGMLEEAFRLRKEME 107 (539)
Q Consensus 47 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 107 (539)
+...|++...-.||.+...+.++.+.+. |..|....---+.-+|...|++.+|.+.|-.+.
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788877777777776654 333333222335556667778888888776654
No 444
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.82 E-value=69 Score=22.19 Aligned_cols=15 Identities=20% Similarity=0.056 Sum_probs=6.7
Q ss_pred cCCHHHHHHHHHHHh
Q 009255 233 EKKLDEAYMLLNSAS 247 (539)
Q Consensus 233 ~~~~~~a~~~~~~~~ 247 (539)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 445
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=54.62 E-value=1.3e+02 Score=25.42 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=10.4
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 009255 368 SGLCREGILEKALKFFRSWI 387 (539)
Q Consensus 368 ~~~~~~g~~~~A~~~~~~~~ 387 (539)
......|+.++|.....++.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33445556666555555443
No 446
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.48 E-value=26 Score=30.87 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=30.1
Q ss_pred CChh-hHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 009255 393 VDSV-TYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAA 435 (539)
Q Consensus 393 ~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 435 (539)
|+.. -|+..|....+.||+++|+.+++++.+.|+.--..+|..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444 356778888888888888888888888776555555543
No 447
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.42 E-value=45 Score=19.91 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=9.5
Q ss_pred CCHhHHHHHHHHHHHcCCCCChhh
Q 009255 164 GKIDKACKIVRNMEENGFSPDCVT 187 (539)
Q Consensus 164 g~~~~a~~~~~~~~~~~~~~~~~~ 187 (539)
|-+.++..++++|.+.|+..+...
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l 39 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKL 39 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHH
Confidence 333344444444444443333333
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.85 E-value=1.2e+02 Score=24.69 Aligned_cols=41 Identities=10% Similarity=0.203 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 009255 156 MIKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAG 199 (539)
Q Consensus 156 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (539)
.+..|.+.|.+++|.+++++..+. |+......-+....+.+
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 345688889999999998888763 44444444444444443
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=53.53 E-value=1.8e+02 Score=26.57 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh----hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009255 446 LEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI----SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYM 521 (539)
Q Consensus 446 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 521 (539)
.++...++..+++.- |+.. .|..+++.+...|..++.+.+|++++..|..|-...-.
T Consensus 119 ~eei~~~L~~li~~I-------------------P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~ 179 (353)
T PF15297_consen 119 KEEILATLSDLIKNI-------------------PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRH 179 (353)
T ss_pred HHHHHHHHHHHHhcC-------------------chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHH
Confidence 457777788777764 6554 78899999999999999999999999989887665444
Q ss_pred HHHH
Q 009255 522 NLMN 525 (539)
Q Consensus 522 ~~l~ 525 (539)
.++.
T Consensus 180 ~l~d 183 (353)
T PF15297_consen 180 VLVD 183 (353)
T ss_pred HHHH
Confidence 3433
No 450
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.50 E-value=96 Score=23.43 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=13.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFE 506 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~ 506 (539)
.|...+..+-..|++.+|.++|+
T Consensus 101 fYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 101 FYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555666666666666554
No 451
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.20 E-value=1.1e+02 Score=30.46 Aligned_cols=75 Identities=16% Similarity=0.174 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHhH------HHHHHHHHHhCCCCCChhhHHHH
Q 009255 15 TILDALFKKGKLNEVRDLLSDMKKQG--LVPNRTTYNILVSGYCKLGWLKE------AMRVVDLMTQNKSLPDVWTYNML 86 (539)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~~~~~~~~l 86 (539)
+++.+|..+|++-.+.++++.+...+ -..-...+|..++.+.+.|.++- |.+.++... ..-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 67788888888888888888777642 22223466777777777776642 233333332 23355666666
Q ss_pred HHHHHh
Q 009255 87 INGWCN 92 (539)
Q Consensus 87 ~~~~~~ 92 (539)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 655443
No 452
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.12 E-value=41 Score=29.73 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=37.6
Q ss_pred CCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009255 477 EIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNL 523 (539)
Q Consensus 477 ~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 523 (539)
.+.|+.. .|+..+..-.+.|+.++|+++++++.+.|..--..++...
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3456666 5668999999999999999999999998877666666543
No 453
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.70 E-value=1.1e+02 Score=23.75 Aligned_cols=82 Identities=12% Similarity=0.165 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHhccCC-HhHHHHHHHHHHhCCCCCCHHHHHH
Q 009255 82 TYNMLINGWCNAGMLEEAFRLRKEMESLK-----LLPDVVTYNTLINRFFESGR-SMEAFKLIDELDEHGIKPNAVTHNI 155 (539)
Q Consensus 82 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (539)
..+.++.-....+++...+.+++.+.... -..+..+|+.++.+...... --.+..+|.-+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666777777777777664321 02244556777776654444 3345666666666666677777777
Q ss_pred HHHHHHhc
Q 009255 156 MIKWYCKE 163 (539)
Q Consensus 156 l~~~~~~~ 163 (539)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77665443
No 454
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=51.46 E-value=95 Score=22.77 Aligned_cols=24 Identities=8% Similarity=0.082 Sum_probs=17.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 437 HTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
+..+.+.|+.-+|.++.+.++...
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h 26 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRH 26 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHc
Confidence 345667788888888888877765
No 455
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.30 E-value=89 Score=22.40 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=21.5
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 009255 54 GYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGMLEEAFRLRKEMESL 109 (539)
Q Consensus 54 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 109 (539)
.+..+|+|++|..+.+... .||...|.+|-. .+.|..++...-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3445555555555444331 344444443332 2344444444444444443
No 456
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=50.11 E-value=2.4e+02 Score=27.02 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=46.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 009255 89 GWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGKIDK 168 (539)
Q Consensus 89 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (539)
.+...|+++.+.+.+....+. +.....+...+++.....|++++|..+-.-|....+. +++.........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666665554432 1233445556666666666666666666666555443 33333333333334455666
Q ss_pred HHHHHHHHHHc
Q 009255 169 ACKIVRNMEEN 179 (539)
Q Consensus 169 a~~~~~~~~~~ 179 (539)
+.-.|+++...
T Consensus 410 ~~~~wk~~~~~ 420 (831)
T PRK15180 410 SYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHhcc
Confidence 66666665543
No 457
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=50.04 E-value=45 Score=18.73 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=24.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+|..|+..-...++++.|.+-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 577889999999999999999999875
No 458
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.84 E-value=5.2e+02 Score=30.88 Aligned_cols=321 Identities=9% Similarity=0.005 Sum_probs=165.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 15 TILDALFKKGKLNEVRDLLSDMKKQGL--VPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
.+..+-.+.+.+.+|...++.-..... ......+..+...|...++++....+...-.. .|+ .+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 455677788999999999998421111 11233445555689999999998887775221 222 233 3444567
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHhHHHH
Q 009255 93 AGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIM-IKWYCKEGKIDKACK 171 (539)
Q Consensus 93 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~ 171 (539)
.|++..|...|+.+.+.+ ++....++.++......+.++..+-..+-.... ..+....++.+ ..+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999875 344677888888888888888877765555443 23333333332 233456677776665
Q ss_pred HHHHHHHcCCCCChhhHHHH--HHHHHh--cCCHHHHHHHHHHHhhCCCCC---------CHHhHHHHHHHHhccCCHHH
Q 009255 172 IVRNMEENGFSPDCVTYNTL--IDANCK--AGNMEEAFRMMDVMGRKGLKM---------NTITLNTILHTLCCEKKLDE 238 (539)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 238 (539)
... . .+..+|... .....+ ..+.-.-.+.++.+.+.-+.| -...|..++....-. +.+.
T Consensus 1540 ~l~--~-----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS--D-----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred hhh--c-----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence 544 1 122233322 222222 222211112222222210000 011122222211100 0111
Q ss_pred HHHHHHHHhhc-CCccCHhhHHHHHHHHHccCCHHHHHHHHHH-HHHcCCC-----CCHhhHHHHHHHHHcCCCHHHHHH
Q 009255 239 AYMLLNSASKR-GYYLDEVSYGTLITGYFRDEKANRALKLWDE-MKERQIM-----PSTFTYNAMIWGLSQSGKTEQAID 311 (539)
Q Consensus 239 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 311 (539)
-.+.+...... ....+..-|..-+..-....+..+-+-.+++ +...... --..+|-...+.....|+++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11111110000 0000111111111111111111111111221 1111111 124578888888888999999998
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhC
Q 009255 312 MLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEK 354 (539)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 354 (539)
.+-++.+.+ -+..+...+......|+...|+.+++..++.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 888777765 2345666777888999999999999998864
No 459
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.18 E-value=1e+02 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 484 SYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 484 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
-|..|+..|...|.+++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578889999999999999999998876
No 460
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=48.87 E-value=59 Score=28.83 Aligned_cols=66 Identities=8% Similarity=0.058 Sum_probs=30.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCCHhHHHHHHHHHHhCC
Q 009255 9 DNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNI-LVSGYCKLGWLKEAMRVVDLMTQNK 75 (539)
Q Consensus 9 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~ 75 (539)
|+..|...+..-.+.|.+.+.-.+|.+.+..+ |.|...|.. -..-+.-.++++.++.+|....+.+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 44445544444444555555555555555543 334444432 1222334455555555555555443
No 461
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=48.86 E-value=1.7e+02 Score=24.99 Aligned_cols=43 Identities=9% Similarity=-0.026 Sum_probs=27.9
Q ss_pred hHHHHHHHHh---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009255 484 SYSEKINEHC---------SQGRYKDALQIFEETRQKGIAINKSTYMNLMNG 526 (539)
Q Consensus 484 ~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~ 526 (539)
.|..++..+. ..+++..|+.+++++++.+-+-...+...-+..
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~ 222 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLER 222 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence 5666666663 456889999999999985433334454444433
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.54 E-value=36 Score=22.03 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=30.2
Q ss_pred CcChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 009255 7 LPDNVTYNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCK 57 (539)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 57 (539)
.|....++-++...++..-.++++..+.+..+.|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555666677777766667777777777777663 455555555555543
No 463
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.46 E-value=2.8e+02 Score=30.45 Aligned_cols=157 Identities=13% Similarity=0.069 Sum_probs=97.7
Q ss_pred HHcCCCHHHHHH------HHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHH-------hCCCCCCHHhHHHH
Q 009255 300 LSQSGKTEQAID------MLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMV-------EKSFKPDIVTCNIL 366 (539)
Q Consensus 300 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 366 (539)
....|.+.++.+ ++......-.++....|..+...+-+.++.+.|...-.... ......+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344555665555 55533332223455678888888889999999887665543 12222344566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhC-----CC--CCCHhh
Q 009255 367 LSGLCREGILEKALKFFRSWILK-----G--KAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEK-----KL--GPDRYT 432 (539)
Q Consensus 367 ~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~--~~~~~~ 432 (539)
...+...++...|...+.+.... | .+|...+++.+-..+...++++.|+++++.+... +. -++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666677888888877766543 2 2333445566655556668999999999988764 11 123455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 009255 433 YAAIHTALVESGRLEEAQKFTSIM 456 (539)
Q Consensus 433 ~~~l~~~~~~~g~~~~A~~~~~~~ 456 (539)
+..+.+.....+++..|....+..
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhH
Confidence 666777777778777776655444
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.88 E-value=1.8e+02 Score=25.03 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=23.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhhcCCccCHhhHHHHHHHH
Q 009255 225 TILHTLCCEKKLDEAYMLLNSASKRGYYLDEVSYGTLITGY 265 (539)
Q Consensus 225 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 265 (539)
.+++.+.+.++++++...+..+...+..++..-.+.|..+|
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 44555566677777777777776665555555555555544
No 465
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.53 E-value=44 Score=22.49 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=12.3
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
+.|++++|+..|.+.++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 57888888777776554
No 466
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=47.35 E-value=2.2e+02 Score=25.77 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-------------ChhhHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 009255 374 GILEKALKFFRSWILKGKAV-------------DSVTYNTLISSLCKERRLEDAFGLLSEMEEK-KLGPDRYTYAAIHTA 439 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 439 (539)
++.+....++..+.+.+..| |...++.|..+ ...+.++--+..+++.+. |-.--...+...+.-
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh-hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHH
Q 009255 440 LVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI-SYSEKINEHCSQGRYKDALQIFEETRQKGIAINKS 518 (539)
Q Consensus 440 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 518 (539)
|++-||.+.|.+++.+..+...+ .+..-|+. .-..++-.|....-..+-++..+.+.++|-..+..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs-------------~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVS-------------LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhh-------------cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Q ss_pred HHHHHHHHHHh-cCCchhhc
Q 009255 519 TYMNLMNGLIK-RRKSISKA 537 (539)
Q Consensus 519 ~~~~~l~~~~~-~~~~~~~A 537 (539)
--.....+++. +-+++.+|
T Consensus 181 NRlKvY~Gly~msvR~Fk~A 200 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEA 200 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHH
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.44 E-value=1.1e+02 Score=26.68 Aligned_cols=22 Identities=9% Similarity=0.445 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009255 190 TLIDANCKAGNMEEAFRMMDVM 211 (539)
Q Consensus 190 ~l~~~~~~~~~~~~a~~~~~~~ 211 (539)
.+...|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4455566666666666666655
No 468
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=45.68 E-value=91 Score=20.93 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=23.2
Q ss_pred HHhhcCCHHHHHHHHHHHHHc-----CCCCCHHHH---HHHHHHHHhc
Q 009255 491 EHCSQGRYKDALQIFEETRQK-----GIAINKSTY---MNLMNGLIKR 530 (539)
Q Consensus 491 ~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~---~~~l~~~~~~ 530 (539)
-+-+.|++++|+..|++.++. ...||..+- ..-+..|..+
T Consensus 15 e~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~R 62 (75)
T cd02682 15 KAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRR 62 (75)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 345678877777777765441 256777654 3344455444
No 469
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=45.18 E-value=76 Score=26.87 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=36.2
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 009255 405 LCKERRLEDAFGLLSEMEEKKLGPD-RYTYAAIHTALVESGRLEEAQKFTSIMVETGKI 462 (539)
Q Consensus 405 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 462 (539)
..+.++.+.+.+++.++... .|. ...|..++..-.+.|+++.|.+.|++.++.+..
T Consensus 5 ~~~~~D~~aaaely~qal~l--ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL--APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhc--CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 34556677777777777643 333 456666666667777777777777777776643
No 470
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.81 E-value=1.5e+02 Score=26.44 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHh----------ccCCHHHH
Q 009255 170 CKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLC----------CEKKLDEA 239 (539)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a 239 (539)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+...+.+++.+... +.-+..++..|| -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 356666666666666666655555555555666777777766542 222444444444 24666666
Q ss_pred HHHHHH
Q 009255 240 YMLLNS 245 (539)
Q Consensus 240 ~~~~~~ 245 (539)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 665544
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.29 E-value=70 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 009255 16 ILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGW 60 (539)
Q Consensus 16 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 60 (539)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 444444455555566666666655544455554444555554443
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.34 E-value=2.5e+02 Score=25.22 Aligned_cols=114 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009255 86 LINGWCNAGMLEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEGK 165 (539)
Q Consensus 86 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (539)
++....+.++.....+.++.+. ....-...+..+...|++..|++++.+..+ -...+..+--.---..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHH
Q ss_pred HhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 009255 166 IDKACKIVRNMEENG-----FSPDCVTYNTLIDANCKAGNMEEAFRMMDV 210 (539)
Q Consensus 166 ~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 210 (539)
+++.....+.+.+.. ...|+..|..+..+|.-.|+...+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 473
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=2.3e+02 Score=24.80 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH-HHHH
Q 009255 374 GILEKALKFFRSWILKGKAVDSVTYNTLISSLCKE-RRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLE-EAQK 451 (539)
Q Consensus 374 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~ 451 (539)
.....|.++-..++..++. +..+|.---..+... .+..+-++.+.+..+.+ +.|-.++..--......|++. .-.+
T Consensus 57 E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccchHH
Confidence 3445666666666665222 333333222222222 24566667777777653 455555554433444456666 6778
Q ss_pred HHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 009255 452 FTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQK 511 (539)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 511 (539)
+.+.++..+ ..+-.+|..--.++..-+.++.-++...++++.
T Consensus 135 f~~~~l~~D------------------aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~ 176 (318)
T KOG0530|consen 135 FTKLMLDDD------------------AKNYHAWSHRQWVLRFFKDYEDELAYADELLEE 176 (318)
T ss_pred HHHHHHhcc------------------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 888888766 355556766666666666666666655555543
No 474
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=42.86 E-value=55 Score=21.34 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=13.5
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 009255 493 CSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~ 510 (539)
-+.|++++|+..|.+.++
T Consensus 16 D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHTTSHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 357888888888887654
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.55 E-value=1.4e+02 Score=25.96 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=11.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 009255 365 ILLSGLCREGILEKALKFFRSW 386 (539)
Q Consensus 365 ~l~~~~~~~g~~~~A~~~~~~~ 386 (539)
.++.-|.+.|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4444555555555555555554
No 476
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=41.81 E-value=53 Score=30.50 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=33.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCchhhc
Q 009255 486 SEKINEHCSQGRYKDALQIFEETRQKGIAINKSTYMNLM--NGLIKRRKSISKA 537 (539)
Q Consensus 486 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l--~~~~~~~~~~~~A 537 (539)
..+..+|.+.++++.|+....+.+. +.|. .+...| ++|++.-.+|.+|
T Consensus 232 tklv~CYL~~rkpdlALnh~hrsI~--lnP~--~frnHLrqAavfR~LeRy~eA 281 (569)
T PF15015_consen 232 TKLVTCYLRMRKPDLALNHSHRSIN--LNPS--YFRNHLRQAAVFRRLERYSEA 281 (569)
T ss_pred HHHHHhhhhcCCCchHHHHHhhhhh--cCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999998888774 4454 333333 3566666667666
No 477
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=41.80 E-value=50 Score=22.19 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=30.7
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCchh
Q 009255 493 CSQGRYKDALQIFEETRQKGIAINKSTYMNLMNGLIKRRKSIS 535 (539)
Q Consensus 493 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 535 (539)
...|+.+.+.+++++..+.|..|.......+..++.+-|..|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~ 54 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWE 54 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999988877777666656666655555444
No 478
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=41.71 E-value=2.6e+02 Score=24.95 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 009255 342 EKALQFHNKMVEKSFKPDIVTCNILLSGLCR----EGILEKALKFFRSWILKGK 391 (539)
Q Consensus 342 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 391 (539)
..|...|.++...+ +......+..+|.. ..++++|...|....+.|.
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 35666666666654 44444445554433 2367777777777776643
No 479
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.53 E-value=64 Score=21.76 Aligned_cols=26 Identities=19% Similarity=0.380 Sum_probs=15.6
Q ss_pred hcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 009255 494 SQGRYKDALQIFEETRQ-----KGIAINKST 519 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 519 (539)
+.|++++|+.+|.+.++ ....||...
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 56777777777666543 114676653
No 480
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.35 E-value=62 Score=21.68 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=11.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETRQ 510 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~~ 510 (539)
..|++++|+.+|...++
T Consensus 18 ~~g~y~eA~~lY~~ale 34 (75)
T cd02684 18 QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 46777777777766544
No 481
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=41.34 E-value=95 Score=19.87 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=9.7
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 009255 21 FKKGKLNEVRDLLSDMKKQ 39 (539)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~ 39 (539)
...|++-+|-++++.+-..
T Consensus 10 ~n~g~f~EaHEvlE~~W~~ 28 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKA 28 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCC
T ss_pred HcCCCHHHhHHHHHHHHHH
Confidence 3455555555555555543
No 482
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.85 E-value=69 Score=23.82 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=20.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 009255 15 TILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLG 59 (539)
Q Consensus 15 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 59 (539)
.++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344444444445555555555555554444444444444444433
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.24 E-value=4.7e+02 Score=27.54 Aligned_cols=299 Identities=8% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 18 DALFKKGKLNEVRDLLSDMKKQGLVPNRT--TYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
+.|...|+++.|.++-+.- |+.. ++..-...|.+.+++..|-+++.++ ...|..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t--------~~~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET--------LSSFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh--------hhhHHHHHHHHHhcCC
Q ss_pred hHHHHHHHHHHHhCCCCCChhh---------HHHHHHHHhccC-CHhHHHHHHHHHHhC---------CCCCCHHHHHHH
Q 009255 96 LEEAFRLRKEMESLKLLPDVVT---------YNTLINRFFESG-RSMEAFKLIDELDEH---------GIKPNAVTHNIM 156 (539)
Q Consensus 96 ~~~a~~~~~~~~~~~~~~~~~~---------~~~l~~~~~~~~-~~~~a~~~~~~~~~~---------~~~~~~~~~~~l 156 (539)
.+ +++.|-.=+-..++|...+ .+..+.-+.... ..+++..-++.-.+. ...-+.......
T Consensus 432 ~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv 510 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETV 510 (911)
T ss_pred HH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHH
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCH
Q 009255 157 IKWYCKEGKIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKL 236 (539)
Q Consensus 157 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 236 (539)
-..+...|+.+....+-.-+.. |..++..+...+.+++|++++.. ..++..+......+...--.
T Consensus 511 ~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~------~~~~el~yk~ap~Li~~~p~ 575 (911)
T KOG2034|consen 511 YQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN------QRNPELFYKYAPELITHSPK 575 (911)
T ss_pred HHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHhhhHHHhcCcH
Q ss_pred HHHHHHHHHHhhcCCccCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 009255 237 DEAYMLLNSASKRGYYLDEVSYGTLITGYFRD---EKANRALKLWDEMKERQIMPSTFTYNAMIWGLSQSGKTEQAIDML 313 (539)
Q Consensus 237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 313 (539)
.....+...-... ++.....++..+.+. .....+...++-....-...++..+|.++..|+...+-+....+-
T Consensus 576 ~tV~~wm~~~d~~----~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le 651 (911)
T KOG2034|consen 576 ETVSAWMAQKDLD----PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLE 651 (911)
T ss_pred HHHHHHHHccccC----chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHH
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 009255 314 NELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMV 352 (539)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 352 (539)
......+. ...-....++.|.+.+....+..++..+.
T Consensus 652 ~~~~~~~~--~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 652 IIKFMKSR--VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHhhcccc--ceecHHHHHHHHHHhCccceeeeHHHHHH
No 484
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=40.24 E-value=3.2e+02 Score=25.62 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=8.2
Q ss_pred hcCCHHHHHHHHHHHH
Q 009255 494 SQGRYKDALQIFEETR 509 (539)
Q Consensus 494 ~~g~~~~A~~~~~~~~ 509 (539)
..|+++.|...+-+++
T Consensus 258 ~~~ry~da~~r~yR~~ 273 (380)
T TIGR02710 258 TQGRYDDAAARLYRAL 273 (380)
T ss_pred HccCHHHHHHHHHHHH
Confidence 3466666555444433
No 485
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.08 E-value=2.2e+02 Score=28.60 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHhccCCHh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 009255 85 MLINGWCNAGMLEEAFRLRKEMESLK--LLPDVVTYNTLINRFFESGRSM------EAFKLIDELDEHGIKPNAVTHNIM 156 (539)
Q Consensus 85 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 156 (539)
+|+.+|...|++..+.++++...... -+.-...+|..++...+.|.++ .+.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887642 1222456788888888888764 3344444433 44577788777
Q ss_pred HHHHHhcCCHhHHHHHHHHHHH
Q 009255 157 IKWYCKEGKIDKACKIVRNMEE 178 (539)
Q Consensus 157 ~~~~~~~g~~~~a~~~~~~~~~ 178 (539)
+.+....-+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333344444443
No 486
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.70 E-value=3.2e+02 Score=25.49 Aligned_cols=51 Identities=4% Similarity=-0.005 Sum_probs=21.8
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHh-ccCCHHHHHHHHH
Q 009255 194 ANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLC-CEKKLDEAYMLLN 244 (539)
Q Consensus 194 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~ 244 (539)
.+.+.|.+..|+++.+-+......-|+.....++..|+ +.++++--+++.+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 33445555555555555544433334444444444433 3333333333333
No 487
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.16 E-value=3.5e+02 Score=25.78 Aligned_cols=373 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 009255 13 YNTILDALFKKGKLNEVRDLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCN 92 (539)
Q Consensus 13 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (539)
.|-.+.-|...|+..+|-+..+++.. +.......-+++...+.-..|..+.-.+...+...+...-+.+..++.+
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v-----sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr 291 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV-----SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSR 291 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC-----CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchh
Q ss_pred cCC--------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009255 93 AGM--------LEEAFRLRKEMESLKLLPDVVTYNTLINRFFESGRSMEAFKLIDELDEHGIKPNAVTHNIMIKWYCKEG 164 (539)
Q Consensus 93 ~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (539)
.+. ...|...|+.+.-....-+...-+++-..-...|+.+. .+.|++=... +|+-|...|
T Consensus 292 ~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~-----------IIqEYFlsg 359 (645)
T KOG0403|consen 292 KGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP-----------IIQEYFLSG 359 (645)
T ss_pred hccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH-----------HHHHHHhcC
Q ss_pred CHhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCC----HHHHH
Q 009255 165 KIDKACKIVRNMEENGFSPDCVTYNTLIDANCKAGNMEEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKK----LDEAY 240 (539)
Q Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~ 240 (539)
+..+..+.++.+-.-...|-...+..-+..-.+...-+-|-.++..+.-. +-++...-..+...+-...+ ...|-
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e-~fsteDv~~~F~mLLesaedtALD~p~a~ 438 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGE-VFSTEDVEKGFDMLLESAEDTALDIPRAS 438 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcc-cCCHHHHHHHHHHHHhcchhhhccccccH
Q ss_pred HHHHHHhhcCCccCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------------CCCCCHhhHHHHHHH
Q 009255 241 MLLNSASKRGYYLDEVSYGTLITGYFRDEKANRALKLWDEMKER---------------------QIMPSTFTYNAMIWG 299 (539)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~~~~~~~~~~l~~~ 299 (539)
+.+.....+.+.-+...-..+=.......-...+.+.++..... .+..-..-...|+.-
T Consensus 439 ~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeE 518 (645)
T KOG0403|consen 439 QELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEE 518 (645)
T ss_pred HHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHH
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----
Q 009255 300 LSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFCSEGQVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGI---- 375 (539)
Q Consensus 300 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 375 (539)
|...|+..+|...++++---.+. ....+..++.+..+.|+-.....+++...+.|.-....+-..+-+.+-...+
T Consensus 519 Y~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~dsl~DlsLD 597 (645)
T KOG0403|consen 519 YELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQMTKGFERVYDSLPDLSLD 597 (645)
T ss_pred HHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhccCcccccC
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009255 376 LEKALKFFRSWILKGKAVDSVTYNTLISSL 405 (539)
Q Consensus 376 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 405 (539)
+..|.+.|+...+.+.. +...|..|-..|
T Consensus 598 vPna~ekf~~~Ve~~~~-~G~i~~~l~~~~ 626 (645)
T KOG0403|consen 598 VPNAYEKFERYVEECFQ-NGIISKQLRDLC 626 (645)
T ss_pred CCcHHHHHHHHHHHHHH-cCchhHHhhhcc
No 488
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.14 E-value=1.9e+02 Score=22.63 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=31.8
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 009255 36 MKKQGLVPNRTTYNILVSGYCKL-GWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGM 95 (539)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 95 (539)
+.+.|+..++. ...++..+... +..-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455554443 33444444443 3566677777777766655555555555555555554
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=39.13 E-value=5.3e+02 Score=27.89 Aligned_cols=126 Identities=11% Similarity=-0.025 Sum_probs=68.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 009255 358 PDIVTCNILLSGLCREGILEK-ALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAI 436 (539)
Q Consensus 358 ~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 436 (539)
++..+-...+.++...+..+. +...+..+.. .+++..-...+.++...|....+...+..+.+ .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 455555555666655554332 2333334332 24566666666777777765544444555542 3454555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 009255 437 HTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQ 510 (539)
Q Consensus 437 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 510 (539)
+.++...+. +++...+..+++ .|+...-...+.++.+.+....+...+.++++
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~--------------------D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT--------------------DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc--------------------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666666654 455555555554 25555555556666655434566677777664
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.76 E-value=2.1e+02 Score=23.08 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 009255 36 MKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQNKSLPDVWTYNMLINGWCNAGML 96 (539)
Q Consensus 36 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 96 (539)
+...|+..++. -..++..+...++.-.|.++++.+.+.++..+..|....+..+.+.|-+
T Consensus 17 L~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34456554443 3345555555566667788888887776666665555556666666544
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.64 E-value=4.6e+02 Score=27.03 Aligned_cols=232 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHhccCCHHHHHHHHHHHhhcCCcc---CHhhHHHHHHHHHccCCHHHHHHHH
Q 009255 202 EEAFRMMDVMGRKGLKMNTITLNTILHTLCCEKKLDEAYMLLNSASKRGYYL---DEVSYGTLITGYFRDEKANRALKLW 278 (539)
Q Consensus 202 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 278 (539)
....++++...-.........+..=++-....-+-++-...+.+|..+--.| .+.+...++..|....+++..+++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHHcCCCCCHh----------hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHh---------cCC
Q 009255 279 DEMKERQIMPSTF----------TYNAMIWGLSQSGKTEQAIDMLNELLQSGMIPDETTFNTIIHGFC---------SEG 339 (539)
Q Consensus 279 ~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~ 339 (539)
+.+... ||.. .|...+.--.+-|+-++|+...-.+.+..-...+..|....+.|- ..+
T Consensus 225 e~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~ 301 (1226)
T KOG4279|consen 225 EDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE 301 (1226)
T ss_pred HHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 009255 340 QVEKALQFHNKMVEKSFKPDIVTCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRLEDAFGLLS 419 (539)
Q Consensus 340 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 419 (539)
..+.|.++|++..+. .|+...--.+...+...|..-+--.-++.+--. |-..+.+.|..++-..+|+
T Consensus 302 s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHFENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred hHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhccchHHHHHHHHH-----------HHHHhhccchHHHHHHHHh
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCC
Q 009255 420 EMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDP 480 (539)
Q Consensus 420 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (539)
-.- .+.+-.-++++.+|++.-+.|.+.. +|
T Consensus 369 V~~-------------y~~asVLAnd~~kaiqAae~mfKLk------------------~P 398 (1226)
T KOG4279|consen 369 VAT-------------YFEASVLANDYQKAIQAAEMMFKLK------------------PP 398 (1226)
T ss_pred HHH-------------hhhhhhhccCHHHHHHHHHHHhccC------------------Cc
No 492
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.12 E-value=3.5e+02 Score=25.46 Aligned_cols=61 Identities=10% Similarity=0.062 Sum_probs=28.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 009255 258 YGTLITGYFRDEKANRALKLWDEMKERQI--MPSTFTYNAMIWGLSQSGKTEQAIDMLNELLQ 318 (539)
Q Consensus 258 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 318 (539)
+..+...|...|+++.|++.|.+.+...- ......|..++..-.-.|+|.....+..+...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34455555556666666666655433210 01223344444444445555555555444443
No 493
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.83 E-value=2.6e+02 Score=23.94 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 009255 153 HNIMIKWYCKEGKIDKACKIVRNMEENGFS 182 (539)
Q Consensus 153 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 182 (539)
+..++-.....|+++.|+++.+..++.|.+
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 444555667889999999998888888743
No 494
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=36.96 E-value=3.1e+02 Score=24.58 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=14.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHH
Q 009255 360 IVTCNILLSGLCREGILEKAL 380 (539)
Q Consensus 360 ~~~~~~l~~~~~~~g~~~~A~ 380 (539)
...|..|+.+++..|+.+-..
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 345677888888888766543
No 495
>PHA02875 ankyrin repeat protein; Provisional
Probab=36.91 E-value=3.8e+02 Score=25.49 Aligned_cols=10 Identities=10% Similarity=-0.400 Sum_probs=4.3
Q ss_pred HHHHhcCChH
Q 009255 88 NGWCNAGMLE 97 (539)
Q Consensus 88 ~~~~~~g~~~ 97 (539)
...+..|+.+
T Consensus 40 ~~A~~~~~~~ 49 (413)
T PHA02875 40 KLAMKFRDSE 49 (413)
T ss_pred HHHHHcCCHH
Confidence 3334455543
No 496
>PRK09857 putative transposase; Provisional
Probab=36.68 E-value=3.2e+02 Score=24.57 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=39.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 009255 435 AIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSISYSEKINEHCSQGRYKDALQIFEETRQKGIA 514 (539)
Q Consensus 435 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 514 (539)
.++.-....++.++-.++++.+.+.. ++.......++.-+.+.|..++++++.++|+..|..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~------------------~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERS------------------PKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhC------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34443345566666666666665543 222234456677777777777788888888887755
Q ss_pred CC
Q 009255 515 IN 516 (539)
Q Consensus 515 p~ 516 (539)
++
T Consensus 273 ~~ 274 (292)
T PRK09857 273 LA 274 (292)
T ss_pred HH
Confidence 54
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.16 E-value=1.5e+02 Score=20.58 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 009255 31 DLLSDMKKQGLVPNRTTYNILVSGYCKLGWLKEAMRVVDLMTQ 73 (539)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 73 (539)
++|+-....|+..|+..|..++..+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666666666666666666655555555555555555543
No 498
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=35.80 E-value=5.1e+02 Score=26.71 Aligned_cols=175 Identities=12% Similarity=0.096 Sum_probs=103.3
Q ss_pred HHhcCCCHHHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 009255 334 GFCSEGQVEKALQFHNKMVEKSFKPDIV--TCNILLSGLCREGILEKALKFFRSWILKGKAVDSVTYNTLISSLCKERRL 411 (539)
Q Consensus 334 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 411 (539)
++..-|+-+.|..+.+++.... .|-.+ -...++.+|+-.|+.....+++.-.+.. ...|+.-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 4455567778888888887653 22222 1234566788888877777777655543 333555555555566667788
Q ss_pred HHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccccCCCCCCCCCCCCChh----hH
Q 009255 412 EDAFGLLSEMEEKKLGPDRY--TYAAIHTALVESGRLEEAQKFTSIMVETGKINHQVVQPNTSKTPEEIDPSSI----SY 485 (539)
Q Consensus 412 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 485 (539)
+....+.+-+.+. ..|... +-..|+-+|+-.|+ .+|+.+++-+... |... +.
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D--------------------~~~fVRQgAl 645 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSD--------------------PVDFVRQGAL 645 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcC--------------------hHHHHHHHHH
Confidence 8888888776654 455543 33456677777775 7899999988873 3222 44
Q ss_pred HHHHHHHhhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCC
Q 009255 486 SEKINEHCSQG-----RYKDALQIFEETRQKGIAINKSTYMNLMN-GLIKRRK 532 (539)
Q Consensus 486 ~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~ 532 (539)
..++-..+++. ++..-++.|.+.+.......-.-+-+.++ +++..||
T Consensus 646 Ia~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAqGildaGG 698 (929)
T KOG2062|consen 646 IALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQGILDAGG 698 (929)
T ss_pred HHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhhcCC
Confidence 44444444443 46666777777774322222233333333 4455554
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.59 E-value=1.2e+02 Score=19.59 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=27.3
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 009255 393 VDSVTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALV 441 (539)
Q Consensus 393 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 441 (539)
|....++.++...++..-.++++..+.++.+.| ..+..+|..-.+.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344556666666666666666777777776665 344555554444444
No 500
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.30 E-value=3e+02 Score=23.85 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 009255 396 VTYNTLISSLCKERRLEDAFGLLSEMEEKKLGPDRYTYAAIHTALVESGRLEEAQKFTSIMVETG 460 (539)
Q Consensus 396 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 460 (539)
..+..+..++...|++-++++.-.+.+... +.+...|..-+.+....=+.++|..-+.++++.+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 345566677888899999999999988653 5566778778888888888999999999999987
Done!